BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (875 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYR... 1513 0.0 UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYR... 1192 0.0 UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria Rep... 1150 0.0 UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria Rep... 1109 0.0 UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organism... 929 0.0 UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacter... 899 0.0 UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepI... 894 0.0 UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms... 872 0.0 UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multac... 868 0.0 UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GY... 862 0.0 UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A... 850 0.0 UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepI... 843 0.0 UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0L... 837 0.0 UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms... 836 0.0 UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GY... 836 0.0 UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organism... 831 0.0 UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8C... 826 0.0 UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6... 821 0.0 UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GY... 818 0.0 UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8... 815 0.0 UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6... 812 0.0 UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber... 803 0.0 UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2R... 790 0.0 UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X... 790 0.0 UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V... 780 0.0 UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH... 768 0.0 UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales ... 762 0.0 UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphapr... 759 0.0 UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacteriu... 759 0.0 UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus mo... 756 0.0 UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagiba... 756 0.0 UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ... 754 0.0 UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepI... 753 0.0 UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostri... 753 0.0 UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYR... 751 0.0 UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepI... 749 0.0 UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachl... 748 0.0 UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincenti... 748 0.0 UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYR... 742 0.0 UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9R... 740 0.0 UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0... 739 0.0 UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6B... 736 0.0 UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum fer... 734 0.0 UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepI... 734 0.0 UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYR... 731 0.0 UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms... 725 0.0 UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA... 723 0.0 UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneo... 721 0.0 UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon... 719 0.0 UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succino... 714 0.0 UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio ... 712 0.0 UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytopla... 707 0.0 UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadens... 696 0.0 UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GY... 692 0.0 UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepI... 691 0.0 UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C... 686 0.0 UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia Re... 679 0.0 UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondria... 672 0.0 UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obsc... 672 0.0 UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia Re... 671 0.0 UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter pis... 670 0.0 UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneum... 668 0.0 UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio p... 666 0.0 UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae R... 665 0.0 UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthro... 662 0.0 UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae ... 660 0.0 UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae Rep... 659 0.0 UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=... 658 0.0 UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix ore... 645 0.0 UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5... 642 0.0 UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5R... 634 e-180 UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q... 633 e-179 UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium... 629 e-178 UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 T... 627 e-178 UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorfe... 627 e-178 UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C... 614 e-174 UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio s... 613 e-173 UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=G... 611 e-173 UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium fer... 608 e-172 UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 595 e-168 UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A ... 593 e-168 UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium ex... 588 e-166 UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicut... 578 e-163 UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms Rep... 573 e-162 UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus... 570 e-161 UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae R... 565 e-159 UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 557 e-157 UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chr... 555 e-156 UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter ... 554 e-156 UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q... 550 e-155 UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cy... 550 e-154 UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. ... 547 e-154 UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobact... 545 e-153 UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyan... 542 e-152 UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria ... 538 e-151 UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibaci... 530 e-148 UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=... 528 e-148 UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis... 525 e-147 UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family pr... 521 e-146 UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarin... 520 e-146 UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicut... 514 e-144 UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 513 e-144 UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales R... 507 e-142 UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firm... 504 e-141 UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholepl... 501 e-140 UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms Rep... 495 e-138 UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipel... 491 e-137 UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetoco... 490 e-136 UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales... 486 e-135 UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID... 478 e-133 UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinoba... 469 e-130 UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcu... 466 e-129 UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z... 466 e-129 UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicut... 465 e-129 UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipel... 462 e-128 UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain pr... 459 e-127 UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphapr... 458 e-127 UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial,... 456 e-126 UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=... 455 e-126 UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria R... 449 e-124 UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myx... 448 e-124 UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcac... 447 e-124 UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula balt... 446 e-123 UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsi... 446 e-123 UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=P... 445 e-123 UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=unculture... 442 e-122 UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma Re... 439 e-121 UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rho... 438 e-121 UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_... 436 e-120 UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma sy... 436 e-120 UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Acti... 435 e-120 UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pu... 434 e-120 UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma co... 431 e-119 UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundi... 429 e-118 UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaprot... 428 e-118 UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphapr... 427 e-118 UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae R... 425 e-117 UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n... 417 e-114 UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=... 417 e-114 UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphapro... 416 e-114 UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma ar... 414 e-114 UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaprot... 412 e-113 UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mo... 410 e-112 UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteoba... 410 e-112 UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacteri... 408 e-112 UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Trophe... 407 e-112 UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Pla... 403 e-110 UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobia... 402 e-110 UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Vari... 397 e-109 UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID... 396 e-108 UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria... 395 e-108 UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaprot... 394 e-108 UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacteri... 389 e-106 UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma homi... 382 e-104 UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria... 380 e-103 UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma... 380 e-103 UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteoba... 373 e-101 UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammapro... 370 e-100 UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria... 369 e-100 UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hy... 364 9e-99 UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 363 2e-98 UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostri... 362 3e-98 UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaprote... 349 3e-94 UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms ... 339 2e-91 UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular ... 323 1e-86 UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clos... 317 1e-84 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 307 1e-81 UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H... 301 8e-80 UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacter... 290 2e-76 UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate di... 284 9e-75 UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria... 284 1e-74 UniRef50_C3X0L8 DNA gyrase subunit A (Fragment) n=1 Tax=Fusobact... 270 2e-70 UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodiu... 266 2e-69 UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from dire... 265 6e-69 UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodiu... 265 8e-69 UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=... 256 2e-66 UniRef50_A4ECR3 Putative uncharacterized protein n=1 Tax=Collins... 254 1e-65 UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=M... 235 6e-60 UniRef50_Q5CB96 ATP-dependent Clp protease, ATPase subunit n=1 T... 225 7e-57 UniRef50_A2I985 DNA gyrase subunit A (Fragment) n=5 Tax=Campylob... 211 1e-52 UniRef50_Q00TB8 DNA gyrase A subunit (ISS) (Fragment) n=1 Tax=Os... 197 1e-48 UniRef50_UPI0001B4252C DNA gyrase subunit A n=1 Tax=Listeria mon... 192 6e-47 UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentispha... 189 3e-46 UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia ... 188 7e-46 UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 186 5e-45 UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella... 182 5e-44 UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bac... 182 6e-44 UniRef50_A8V037 DNA gyrase, A subunit n=1 Tax=Hydrogenivirga sp.... 179 6e-43 UniRef50_C0X5K0 Possible DNA topoisomerase IV subunit A (Fragmen... 177 1e-42 UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibr... 175 6e-42 UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 174 1e-41 UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=D... 174 1e-41 UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringien... 173 2e-41 UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria... 173 2e-41 UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JA... 172 6e-41 UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bact... 172 7e-41 UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Tr... 171 1e-40 UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomat... 164 2e-38 UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opit... 159 4e-37 UniRef50_B1QFR9 DNA gyrase, A subunit n=2 Tax=Clostridium RepID=... 152 4e-35 UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase... 150 2e-34 UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chth... 150 2e-34 UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=... 148 7e-34 UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 136 3e-30 UniRef50_C9MZF3 DNA gyrase, A subunit n=1 Tax=Leptotrichia hofst... 132 4e-29 UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n... 123 3e-26 UniRef50_Q4EDX9 DNA topoisomerase IV, A subunit n=2 Tax=Listeria... 116 3e-24 UniRef50_B1PL26 Topoisomerase IV (Fragment) n=184 Tax=cellular o... 110 3e-22 UniRef50_Q56C44 Gp52 DNA topoisomerase subunit n=1 Tax=Enterobac... 107 2e-21 UniRef50_UPI0001854D31 DNA gyrase subunit A n=1 Tax=Helicobacter... 107 2e-21 UniRef50_P07065 DNA topoisomerase medium subunit n=8 Tax=T4-like... 106 4e-21 UniRef50_C4MZZ9 Gp52 topoisomerase II, medium subunit n=2 Tax=un... 105 7e-21 UniRef50_Q76Y98 Gp52 topoisomerase II medium subunit n=1 Tax=Aer... 98 2e-18 UniRef50_P72065 Mxe gyrA intein (Fragment) n=1 Tax=Mycobacterium... 97 2e-18 UniRef50_B5IGD1 DNA gyrase C-terminal domain, beta-propeller n=1... 96 9e-18 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 95 1e-17 UniRef50_Q6WHM1 Topoisomerase II small subunit n=1 Tax=Vibrio ph... 94 2e-17 UniRef50_Q6U961 Topoisomerase II medium subunit n=3 Tax=unclassi... 93 4e-17 UniRef50_UPI000038387A COG0188: Type IIA topoisomerase (DNA gyra... 92 1e-16 UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchi... 91 2e-16 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 89 7e-16 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 88 2e-15 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 88 2e-15 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 87 4e-15 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 86 5e-15 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 84 2e-14 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 84 2e-14 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 84 2e-14 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 83 4e-14 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 83 4e-14 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 83 6e-14 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 82 9e-14 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 82 1e-13 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 82 1e-13 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 81 2e-13 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 81 2e-13 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 80 3e-13 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 80 3e-13 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 80 3e-13 UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q... 79 7e-13 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 79 8e-13 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 78 1e-12 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 78 2e-12 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 77 2e-12 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 77 2e-12 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 77 2e-12 UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV 77 4e-12 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 76 5e-12 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 76 7e-12 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 75 8e-12 >UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYRA_ERWCA Length = 878 Score = 1513 bits (3916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 739/851 (86%), Positives = 794/851 (93%), Gaps = 1/851 (0%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM+VLGNDWN Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVGDVIGKYHPHGDSAVY+TIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIR++KIAHEL+ADLEKETVDFV NYDGTE+IPDVMPT+IPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNLTEV+NGCLAYIDDE+IS+EGLMEHI GPDFPTAAIINGRRGIEEAYRTGRGK+ Sbjct: 181 NIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRARAEVE DAKTGRETIIVHEIPYQVNKARLIEKIAELVK+KR+EGISALRDESDKDG Sbjct: 241 YIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+KRDAVGEVVLNNLYSQTQLQ SFGINMVALH GQPKIM LKDI+ AFVRHRRE Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRRE 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVTRRTIFELRKARDRAHILE LA+ALANIDPIIELIR A +PAEAK +L+A W+LG+V Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSV 420 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 A MLERAGDDAARPEWLEPEFG+RDG YYLTEQQAQAILDLRLQKLTG+EHEKLLDEYKE Sbjct: 421 ATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKE 480 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 LL +IAELL IL S +RLMEVIREELE + Q+ D+RRTEITAN+ADIN+EDLI QEDVV Sbjct: 481 LLAEIAELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLINQEDVV 540 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLSHQGYVKYQPLS+YEAQRRGGKGKSAARIKEEDFIDRLLVANTHD ILCFSSRGR+Y Sbjct: 541 VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 600 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 MKVYQLPEA+RGARGRPIVNLLPLE DERITAILPV E+EEG +FMATA+GTVKKT L Sbjct: 601 WMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGTVKKTAL 660 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 TEF+R +G +A+ L +GDELIGVDLT G DE MLFSAEGKVVRF E +VR+MG TG Sbjct: 661 TEFSR-HVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATG 719 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 VRGI L D+VVSLI+PRG+G ILT TQNG+GKRTAV+EYPTKSRATKGVISIKV+ERN Sbjct: 720 VRGINLQGEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN 779 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G VVGAVQVD DQIMMITDAGTLVRTRVSE+SIVGRNTQGV LIRTAEDE+VVGLQRVA Sbjct: 780 GKVVGAVQVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVA 839 Query: 841 EPVDEEDLDTI 851 EPV++E+LD + Sbjct: 840 EPVEDEELDGV 850 >UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYRA_PSEAE Length = 923 Score = 1192 bits (3084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 588/923 (63%), Positives = 730/923 (79%), Gaps = 52/923 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +LA+EI PVNIE+ELK SYLDYAMSVIVGRALPD RDGLKPVHRRVLYAM+ LGNDWN Sbjct: 1 MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVGDVIGKYHPHGD+AVYDTIVRMAQPFSLRYMLVDGQGNFGS+DGD+AAAM Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R+AK+AHEL+ADLEKETVD+V NYDGTE+IP VMPTKIPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVI+GCLA +D+ D++++ LM++IPGPDFPTA IINGR GI EAYRTGRG++ Sbjct: 181 NIPPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRI 240 Query: 241 YIRARAEVE-VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 YIRARA VE ++ GRE II+ E+PYQ+NKARLIEKIAELVKEK++EGIS LRDESDKD Sbjct: 241 YIRARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKD 300 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMR+VIE++R VGEVVLNNLY+QTQLQ FGIN+VAL GQP+ +NLKD++ FVRHRR Sbjct: 301 GMRVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRR 360 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVVTRRT++ELRKAR+R HILE AVAL+NIDP+IELI+ +PTPAEAK L+A W+ Sbjct: 361 EVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSA 420 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 V AM+ERAG DA RPE L+P++G+RDG YYL+ +QAQAIL+LRL +LTGLEHEKLL EY+ Sbjct: 421 VEAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQ 480 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 E+L+ I EL+RIL + RLMEVIREELE V+ +FGD RRTEI A+ D+ + DLIT+ED Sbjct: 481 EILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDR 540 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 VVT+SH GY K QPL+ Y+AQRRGGKGKSA +K+ED+I+ LLVAN+H +L FSS+G+V Sbjct: 541 VVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV------------TEFEE----- 642 Y ++ +++PEA+R ARGRP+VNLLPL++ ERITA+L + + +E Sbjct: 601 YWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAV 660 Query: 643 --------------------------GVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL 676 G +FMATA GTVKKT L +F+R R++G +A+KL Sbjct: 661 LEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKL 720 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI 736 +GD LI +T G EVMLFS+ GKV+RF ES VR MG N GVRG+RLG+G +++S++ Sbjct: 721 EEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQLISML 780 Query: 737 VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIM 796 +P ILTA++ G+GKRT ++++P + R +GVI++ ERNG ++ AVQV + ++IM Sbjct: 781 IPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIM 840 Query: 797 MITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV--DEEDLDTID-- 852 +I+D GTLVRTRV E+S+ GRNTQGV LI+ A DE +VGL+RV EP D+EDL + Sbjct: 841 LISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEA 900 Query: 853 ----GSAAEGDDEIAPEVDVDDE 871 G +AE + E A E + ++E Sbjct: 901 AESLGESAESESEPAAEAEGNEE 923 >UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria RepID=GYRA_BUCAI Length = 830 Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/846 (65%), Positives = 695/846 (82%), Gaps = 19/846 (2%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M D +REI VNIEEELKSSYLDY+MSVIVGRALPDVRDGLKPVHRR+L+AM +L NDWN Sbjct: 1 MKDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSAR+VGDVIGKYHPHGDSAVYD IVRMAQ FSLRYML+DGQGNFGS+DGDSAAAM Sbjct: 61 KAYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R++KIAHEL+ DLEK TV+F+ NYDGTE IP+++P KIPNLL+NGSSGIAVGMAT Sbjct: 121 RYTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVINGCLAYID+ DI++E L++HIPGPDFPTAAIING+ GIEEAYRTG+GK+ Sbjct: 181 NIPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRA+ ++E + K +E+I+ +EIPYQVNK+RLIEKIAELVKEKR++GI+ALRDESDKDG Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+KR+A+ EV+LN LYS TQLQ+SFGINMVAL GQPK ++LK+I+ F+ HR+E Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQE 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ RR++FEL K R+R HILE L +AL NI+ IIE+I+++ +AK ++ W+ Sbjct: 361 IIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWK---- 416 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 E+ A + E YY +E+QAQAILDLRL K+T LE EK++ E+ + Sbjct: 417 ---SEKINYLAKKHE------------YYFSEKQAQAILDLRLHKITNLEQEKIIMEHND 461 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L+ + EL IL + ++ EVI+ EL ++ F DKRRT+IT N +DIN+EDLI QEDVV Sbjct: 462 LIKKTKELKEILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVV 521 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLSH GYVKYQPLS+Y AQRRGGKGKSAA+IKEEDFI+ L++ANTHD ILCFSSRG +Y Sbjct: 522 VTLSHSGYVKYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILY 581 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 MKVYQLPE++R ARGRPIVNLLPL ERITAILPV ++++ + +FM TA+G VKK+ L Sbjct: 582 WMKVYQLPESSRHARGRPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSL 641 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 ++F + R AG +AI L DELIGV LT G + +MLF+ GKVV+F E+SVR MG +G Sbjct: 642 SQFKKPRFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASG 701 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+GI++ + DKVVSLIVP+ G+IL AT+NGYGKRT ++++P KSRAT+GVISIK+T++N Sbjct: 702 VKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN 761 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G ++GA+QV + DQIMMITDAGTLVR RVSE+ ++ RNTQGVILIRT+++E VV LQ++ Sbjct: 762 GKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIV 821 Query: 841 EPVDEE 846 +P+ E+ Sbjct: 822 DPMIEK 827 >UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria RepID=GYRA_BUCBP Length = 847 Score = 1109 bits (2869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/846 (62%), Positives = 678/846 (80%), Gaps = 16/846 (1%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M ++A+EI ++IE+ELK+SYLDYAMSVI+GRALPDVRDGLKPVHRR+L+AM VL NDWN Sbjct: 1 MKEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSAR+VGDVIGKYHPHGD+AVYD IVRMAQPFSLRY+L+DGQGNFGSIDGDSAAAM Sbjct: 61 KTYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIR++KIA+EL+ DL+K TV F NYDGTEKIP+V+P KIPNLL+NGSSGIAVGMAT Sbjct: 121 RYTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHN+ EVINGCLA+IDD++I+++ LMEHIPGPDFPTA +ING+RGIE+AY+TG+GK+ Sbjct: 181 NIPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRA++ +E+ KT +++II++E+PYQVNKAR+I+ IA LVKEK++EGI+ LRDESDK+G Sbjct: 241 YIRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+K++ E++LN LYS TQL++SFGINMVAL HGQPK+M LK+I+ AF+ HRR+ Sbjct: 301 MRIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRK 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW--QLG 418 ++ RR++FEL K R + HILE L ++L NID II LI+ + T EAK L W + Sbjct: 361 IIMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHA 420 Query: 419 NVAAMLERAG------DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 +L++ D RP + ++LT +Q QAIL+LRLQKLT LEH+ Sbjct: 421 QYTQILKKNAHSLTPYDKKLRP--------IDTQKFFLTPEQIQAILELRLQKLTHLEHK 472 Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED 532 KL+ EYK+L L IL + + L +++++EL +R+ FGDKRRT+I N +DIN D Sbjct: 473 KLISEYKQLFKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSD 532 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 LI +E+VV+TLS+ GYVKYQ LS YEAQ+RGGKGK A + KEEDFI+ LLVANTHD ILC Sbjct: 533 LINKENVVITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILC 592 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 FSS+G +Y MKVYQLPEA+R ARGRPIVNLLPL +ERITAILP++E+++ + +FMAT+ Sbjct: 593 FSSKGILYWMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSK 652 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 712 G VKKT L EF + RT G +AI L DELIGV LT+G + +MLF+A+GK V F E VR Sbjct: 653 GMVKKTSLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVR 712 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 G GV+GI++ + DKVVSL+VP+ G IL T++GYGKRT + E+P KSRAT+G I Sbjct: 713 KTGRTAIGVQGIKIKKSDKVVSLVVPKKHGNILLITEHGYGKRTEIHEFPIKSRATQGTI 772 Query: 773 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN 832 ++K+T++NG+V+G +QV + DQI++IT+AGTLVRTRV EI I+GRNTQGVI+IRT++ E Sbjct: 773 AMKITKKNGIVIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKKEK 832 Query: 833 VVGLQR 838 VV LQ+ Sbjct: 833 VVALQK 838 >UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organisms RepID=GYRA_NEIGO Length = 916 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/891 (53%), Positives = 622/891 (69%), Gaps = 48/891 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 A E PV++E+E++ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM+ L N+WN AY Sbjct: 12 FALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAY 71 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VGDVIGKYHPHGDSAVYDTIVRMAQ F++RY+L+DGQGNFGS+DG +AAAMRYT Sbjct: 72 KKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYT 131 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 EIR+AKI+HE++AD+E+ETV+F NYDG+E P V+PT+ P LLVNGSSGIAVGMATNIP Sbjct: 132 EIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIP 191 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNLT+ IN CL +D+ I+ L++ I PDFPT A I G G+ E Y+TGRG+V +R Sbjct: 192 PHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREGYKTGRGRVVMR 251 Query: 244 ARAEVEVDAKTG-RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 + +E K G RE I++ EIPYQVNKA+L+EKI +LV+EK +EGIS LRDESDK GMR Sbjct: 252 GKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMR 311 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +VIE+KR+ EVVLN LY T LQ SFGINMV L GQP+++NLK I++ F+RHRREVV Sbjct: 312 VVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVV 371 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 TRRT+F L+KAR HI E AVAL+NID II+LI+ +P AEAK L+A PW V Sbjct: 372 TRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEE 431 Query: 423 MLERAGDD--AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ML R+G D RPE L G++ YYL+E QA AIL + L+ LTGL+ +++++ YK Sbjct: 432 MLTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKN 491 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L+ +I + + IL +R+ ++IR+ELE ++ +GD+RR+EI DI EDLI Q ++V Sbjct: 492 LMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMV 551 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTL+H GY+K QP ++Y+AQRRGG+GK AA K+EDFI+ L VANTHD+++CF++ G+ + Sbjct: 552 VTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCH 611 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +KVY+LPE R +RGRPI N++ LE+ E+++AIL V EF E VF ATA G VKK L Sbjct: 612 WIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQL 671 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA------- 713 + F +R G AI L +GD L+G T G D++MLFS GK +RF E ++ Sbjct: 672 SAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAED 731 Query: 714 ---------------------MGCNTTGVR----------GIRLGEGDKVVSLIV--PRG 740 + GVR G+RL K+VSLI P Sbjct: 732 ADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPET 791 Query: 741 DGA---ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMM 797 + + +LTAT NGYGKRT +A+Y K++ +G I+I ERNG +V A V + D +M+ Sbjct: 792 EESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLML 851 Query: 798 ITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848 IT G L+RT+V +I GR GV LI E E +V L+RVAE DE +L Sbjct: 852 ITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAE--DESEL 900 >UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacteria RepID=D0SBV6_ACIJO Length = 993 Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/888 (53%), Positives = 611/888 (68%), Gaps = 67/888 (7%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 EI P+ IE+ELK+SYLDYAMSVIV RALPDVRDGLKPVHRRVLYAM+ LGND+NKAYKKS Sbjct: 5 EIRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKS 64 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDVIGKYHPHGDSAVY+TIVRMAQ FSLRY LVDGQGNFGS+DGDSAAAMRYTE+R Sbjct: 65 ARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVR 124 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + K+ HE++ADLEK+TVD+ DNYDG+E+IP VMPT+IPNLL+NG++GIAVGMATN+ PHN Sbjct: 125 MRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHN 184 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 +TEV+N CLAY ++ +ISIEGLME+I GPDFPT II G+ GI +AYRTG+G+++IR + Sbjct: 185 MTEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIYGKAGIVDAYRTGKGRLHIRGKY 244 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 E D KTGR TI+ EIPYQVNKA+ IE+IAELVKEK++EGIS LRDESDKDGMRI I+ Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAID 304 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KR EVV+NNL+ TQL+ SF INMV L +GQPK+MNLKDI+AAF+RHR+EVVTRRT Sbjct: 305 LKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIVAAFIRHRQEVVTRRT 364 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 +FELRKAR+R HILE L VALANID IIE I+ + PAEA+ L A W GNV A+LE+ Sbjct: 365 MFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLEK 424 Query: 427 AGDDAARPEWLEPE-----FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 AG + RP+ +E E FG+ +Y L+ Q AIL+LRL +LTGLE +KL EY E+ Sbjct: 425 AGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTEI 484 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 L QIAEL IL + LM VI+EEL L+ +Q+GD RRT I + D + EDLI +E VV+ Sbjct: 485 LGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESRIDFSREDLIPEEQVVL 544 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 T+S GY K QPLS+Y AQRRGG+GKSA +KE+D+I L+V + H +LCF++ G+VY Sbjct: 545 TVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGKVYR 604 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 ++V+++P+A+RG++GRP+VNLLPL+ DE ITAILPV + + K +A V+ V T Sbjct: 605 LRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKKFKERLAEFKNFVRSNVAT 664 Query: 662 -EFNRLRTAGKVAIKLV------DGDEL----------IGVDLTSGEDE----------- 693 N + A A+K D DEL +GV+L++ + + Sbjct: 665 LRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNETVVEFADLA 724 Query: 694 --------VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAIL 745 V + +A G V R + + N G+R I L E D ++ + + G+ I+ Sbjct: 725 EKMRKNFFVFMATASGTVKRVELEQFSNVRSN--GLRAIELKEEDTLIGVAITDGEQQIM 782 Query: 746 TATQNGYGKRTAVAEYPTKSRATKGVISIKVT-------------------ERNGL---- 782 + G R + + R KGV ++VT E + L Sbjct: 783 LFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVAS 842 Query: 783 -VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 +V V V + +++ + G RT V + R +GVI I+T+E Sbjct: 843 RIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSE 890 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 111/249 (44%), Positives = 153/249 (61%), Gaps = 27/249 (10%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 VFMATA+GTVK+ L +F+ +R+ G AI+L + D LIGV +T GE ++MLFS EGK +R Sbjct: 733 VFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVAITDGEQQIMLFSNEGKAIR 792 Query: 706 FKESSVRAMGCNTTGVRGIR-------------------------LGEGDKVVSLIVPRG 740 F E+ R MG GVRG+R L ++VSL+V Sbjct: 793 FSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVASRIVSLVVVPE 852 Query: 741 DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITD 800 G +L A+ NGYGKRT V ++PTK R KGVI+IK +ERNG +VGAV +D+ ++M+I+D Sbjct: 853 TGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDESKELMLISD 912 Query: 801 AGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDD 860 GTLVRTR SE++ GRN QGV LIR +E +VG+ V E+D+ +D S ++ Sbjct: 913 GGTLVRTRASEVARTGRNAQGVRLIRLGNEEILVGVVAVEAVEVEDDI--LDASIETTEE 970 Query: 861 EIAPEVDVD 869 + EV+VD Sbjct: 971 TVVDEVNVD 979 >UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepID=C6RQR3_ACIRA Length = 985 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/889 (53%), Positives = 607/889 (68%), Gaps = 70/889 (7%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 EI P+ IE+ELK SYLDYAMSVIV RALPDVRDGLKPVHRRVLYAM+ LGND+NKAYKKS Sbjct: 5 EIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKS 64 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDVIGKYHPHGDSAVY+TIVRMAQ FSLRY LVDGQGNFGS+DGDSAAAMRYTE+R Sbjct: 65 ARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVR 124 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + K+ HE++ADLEK+TVD+ DNYDG+E+IP VMPT+IPNLL+NG++GIAVGMATN+ PHN Sbjct: 125 MRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHN 184 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 +TEV+N CLAY D+ +IS+EGLME+I GPDFPT II G+ GI +AYRTG+G+++IR + Sbjct: 185 MTEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKY 244 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 E D KTGR TI+ EIPYQVNKAR+IE+IAELVKEK++EGIS LRDESDKDGMRI I+ Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KR EVV+NNL+ TQL+ SF INMV L +GQPK+MNLKDIIAAF+RHR+EVVTRRT Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRT 364 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 ++ELRKAR+R HILE L VALANID II+ I+ + PAEA+ L+A W G V AMLER Sbjct: 365 MYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLER 424 Query: 427 AGDDAARPEWLEPE-----FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 AG + RP+ +E E FG+ +Y L+ Q AIL+LRL +LTGLE +KL EY E+ Sbjct: 425 AGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSEI 484 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 L QI EL IL + LM VI+EEL LV +Q+GD RRTEI + D + EDLI +E VV+ Sbjct: 485 LGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESRIDFSREDLIPEEQVVL 544 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 T+S GY K QPLS+Y AQRRGG+GKSA +KE+DFI L+V + H +LCF++ G+VY Sbjct: 545 TVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVGKVYR 604 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV-------TEFEEGVKVFMATANGT 654 ++V+++P+A+RG+RGRP++NLLPL+ +E ITAILPV TE K F+ T T Sbjct: 605 LRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTERLAAFKNFVKT--NT 662 Query: 655 VK--------------KTVLTEFN--------RLRTAGK---VAIKLVDGDELIGVDLTS 689 VK +T L + LRT K V + + D D+ I ++ Sbjct: 663 VKLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEIIIEFAQ 722 Query: 690 GEDE------VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA 743 + V + +A G V R + + N G+R I L E D ++ + + G+ Sbjct: 723 QAESVRKNYYVFMATASGTVKRVELEQFSNVRSN--GLRAIELNEEDTLIGVTITDGEQQ 780 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT-----------------------ERN 780 I+ + G R A + R+ KGV ++V Sbjct: 781 IMLFSNEGKAIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVV 840 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 +V V V + +++ + G RT V + R +GVI I+T+E Sbjct: 841 SRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSE 889 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 103/215 (47%), Positives = 140/215 (65%), Gaps = 24/215 (11%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 VFMATA+GTVK+ L +F+ +R+ G AI+L + D LIGV +T GE ++MLFS EGK +R Sbjct: 733 VFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQIMLFSNEGKAIR 792 Query: 706 FKESSVRAMGCNTTGVRGIRLGEG------------------------DKVVSLIVPRGD 741 F E+ VRAMG + GVRG+R+ ++VSL+V Sbjct: 793 FAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLVVVPET 852 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 G +L A+ NGYGKRT V ++PTK R KGVI+IK +ERNG +VGAV +D+ ++M+I+D Sbjct: 853 GEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDETKELMLISDG 912 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 836 GTLVRTR +E++ GRN QGV LIR E E +VG+ Sbjct: 913 GTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVGV 947 >UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms RepID=GYRA_BACSU Length = 821 Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/828 (53%), Positives = 593/828 (71%), Gaps = 36/828 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 ++ +NI +E+++S+LDYAMSVIV RALPDVRDGLKPVHRR+LYAMN LG +K YKKS Sbjct: 8 QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKS 67 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 AR+VG+VIGKYHPHGDSAVY+++VRMAQ F+ RYMLVDG GNFGS+DGDSAAAMRYTE R Sbjct: 68 ARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAR 127 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 ++KI+ E++ D+ K+T+D+ DNYDG+E+ P VMP++ PNLLVNG++GIAVGMATNIPPH Sbjct: 128 MSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQ 187 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L E+I+G LA ++ DI+I LME IPGPDFPTA I GR GI +AY +GRG + IRA+A Sbjct: 188 LGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKA 247 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 E+E +G+E IIV E+PYQVNKA+LIEKIA+LV++K++EGI+ LRDESD+ GMRIVIE Sbjct: 248 EIE-QTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIE 306 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 ++RDA V+LNNLY QT LQ SFGIN++AL GQPK++ LK + ++ H++ V+ RRT Sbjct: 307 IRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRT 366 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 +ELRKA RAHILE L VAL ++D +I LIR++ T A+T L+ Sbjct: 367 AYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ------------- 413 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + LTE+QAQAILD+RLQ+LTGLE EK+ +EY+ L+ IA Sbjct: 414 ---------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIA 452 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEI-TANSADINLEDLITQEDVVVTLSH 545 EL IL + +++E+IREEL ++E+F D+RRTEI T+ I EDLI +E++VVTL+H Sbjct: 453 ELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTH 512 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GYVK P S Y +Q+RGGKG E+DF++ L+ +THD IL FS++G+VY K Y Sbjct: 513 NGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGY 572 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 ++PE R A+G PI+NLL +E+ E I AI+PVTEF + +F T +G K+T L++F Sbjct: 573 EIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFAN 632 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +R G +A+ L + DEL+GV LT G ++++ + G ++RF E+ VR MG GV+GI Sbjct: 633 IRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGIT 692 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L + D VV + + + +L T+ GYGKRT EY T+SR KG+ + K+TE NG +V Sbjct: 693 LTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVA 752 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 + +M+IT +G L+R +++ISI GR TQGV LIR AE+E+V Sbjct: 753 VKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHV 800 >UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLW4_9FIRM Length = 808 Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/830 (52%), Positives = 583/830 (70%), Gaps = 35/830 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I PVN+E E+K+SY+DYAMSVIV RALPDVRDGLKPVHRR+LYAM G NK YKKS Sbjct: 7 KIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKS 66 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 AR+VG+V+GKYHPHGDS+VYD IVRMAQ FS+RYML DG GNFGS+DGD AAAMRYTE+R Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVR 126 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 ++KIA ++ D++KETVDF NYD + K P+V+P K P LLVNG+SGIAVGMATNIPPHN Sbjct: 127 MSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPHN 186 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 + EVI+G L ID D +I+ LM+ I GPDFPTA +I G+ GI +AY TGRG + +RA A Sbjct: 187 MCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVIKMRANA 246 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 +E G+ IIV E+PYQVNKARL+EKIA+LV++K++EGI+AL DESD+ GMRIVI+ Sbjct: 247 RIET-LSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVID 305 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 ++RDA V+LN LY TQLQ SFG+ M+AL G+PKI+NLK+++ ++ H+ +V+TRRT Sbjct: 306 LRRDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQEDVITRRT 365 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 ++L+KA RAHILE L +AL ++D +I IR + T A+ AL++ Sbjct: 366 RYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISG------------- 412 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + L+E+QAQAILDLRLQ+LTGLE EK+ +EY+E+L I Sbjct: 413 ---------------------FKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKAIE 451 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 E IL R++ +I++EL+ V+ +FGD RRT +T ++++I++EDLI +EDVV+TL+H Sbjct: 452 EYKAILADEGRILAIIKDELKAVKAKFGDARRTRLTVDTSEIDVEDLIAEEDVVITLTHN 511 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Y+K L Y Q RGGKG KE+DF++ LL+ TH IL F++RGRVY +K Y+ Sbjct: 512 NYIKRMALDTYRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVYHLKAYE 571 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 + EA+R A+G I+NLL LE+DE+ITA++ V F +FMAT G VKKT L EF L Sbjct: 572 IAEASRAAKGTAIINLLQLEKDEKITAVIQVKGFNPDAYLFMATKKGIVKKTSLVEFKNL 631 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 G AI L D DELIGV T GE +++L + G + F E VRAMG GV+GI L Sbjct: 632 HKGGLNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAMGRAARGVKGISL 691 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 +GD+V+ + + +LT T GYGKRT +EY ++R KG+I++KVTE+ G V+G Sbjct: 692 NDGDEVIGMDTLSPNAEVLTVTAEGYGKRTETSEYRAQNRGGKGLINLKVTEKTGDVIGL 751 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 836 V ++M+IT G ++RT +S+IS++ RNTQGV L+ T E++ V + Sbjct: 752 RVVHPDQELMLITTEGIVIRTNISDISVISRNTQGVKLMSTGENDIVASM 801 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 13/198 (6%) Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + +G VK L E++ +GG +A + ++D + + + ++ + G Sbjct: 615 TKKGIVKKTSLVEFKNLHKGGL--NAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFG 672 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 + R ARG ++L + DE ++ + +V TA G K+T +E+ Sbjct: 673 EDDVRAMGRAARGVKGISLN--DGDE----VIGMDTLSPNAEVLTVTAEGYGKRTETSEY 726 Query: 664 NRLRTAGKVAIKLV----DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 GK I L GD +IG+ + + E+ML + EG V+R S + + NT Sbjct: 727 RAQNRGGKGLINLKVTEKTGD-VIGLRVVHPDQELMLITTEGIVIRTNISDISVISRNTQ 785 Query: 720 GVRGIRLGEGDKVVSLIV 737 GV+ + GE D V S+ V Sbjct: 786 GVKLMSTGENDIVASMAV 803 >UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GYRA_RICBR Length = 905 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/889 (49%), Positives = 604/889 (67%), Gaps = 62/889 (6%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + + PVNIE+E+K SYLDYAMSVIV RA+PDVRDGLKPVHRR++Y+M+ GN N+AY+ Sbjct: 6 SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYR 65 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDV+GKYHPHGDSA+YD++VRMAQ FSLR LVDGQGNFGS+DGD+AAAMRYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTE 125 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+AK+AH+L+ D++KETV F NYDG+E+ P V+P+ PNLLVNGS GIAVGMATNIPP Sbjct: 126 SRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPP 185 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EVI+ C Y+D+ DI I L+E + GPDFPT+ II G GI+ AY TGRG + IR Sbjct: 186 HNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIAIRG 245 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 RAE+E + GR+ II+ EIPY VNKARL+EKIAE+VKEKR+EGIS LRDES+K+G+RI Sbjct: 246 RAEIE-NLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIY 304 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+K+D V EVVLN +YS TQLQ SFG+ M+AL G PK+MNLK++IAAFV R V+T Sbjct: 305 IELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITN 364 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RTI+ L KARD+AHIL L +A++NID II +I+ A P AK L+A W N+ ++ Sbjct: 365 RTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLV 424 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + D A E +G TE QA+AIL++RLQ+LT +E KL ++ K L + Sbjct: 425 KLVDDKAMLNE---------EGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATE 475 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I E L ILGS +RL+E+++EEL V+E+F R T I D ++EDLI +E++VVT++ Sbjct: 476 ITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVT 535 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GY+K PLS Y AQ+RGGKG+S +++ED ++ V +TH +L FS+ G+VYS+K+ Sbjct: 536 LGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKL 595 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLT 661 Y+LP + +GRP+VN+LPL+ DE IT I+P+ E + + + + ATA G ++++ L Sbjct: 596 YKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLL 655 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-G 720 +F ++++ GK+AI+L + D+LI V ++ ++L + GK +RF S+R + T+ G Sbjct: 656 DFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDG 715 Query: 721 VRGIRLGEGDKVVSLIVPRGDGA------------------------------------- 743 VRG+RL E D V+S+ V +G A Sbjct: 716 VRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDLTAE 775 Query: 744 -----------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 ILT T+NG+GKR++ Y R G+I++ + ++ GLVVG + V Sbjct: 776 SILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMD 835 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 D++M+IT++G L+R ++ + I GRNT GV L R + E VV +AE Sbjct: 836 DELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAE 884 >UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A n=17 Tax=cellular organisms RepID=Q0W7S4_UNCMA Length = 826 Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/842 (51%), Positives = 592/842 (70%), Gaps = 37/842 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + PV IEEE+K SY+DYAMSVIVGRALPDVRDGLKPVHRR LY M LGN +K YKKSA Sbjct: 21 LLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKKSA 80 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDV+GKYHPHGD+A+YDTIVRMAQ FSLRY LVDGQGNFGSIDGD AAAMRYTE+RL Sbjct: 81 RVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEVRL 140 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +IA E++ADL+KETVDF N+D T K P V+P ++PNLL+NGSSGIAVGMATNIPPHNL Sbjct: 141 ERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPHNL 200 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+++G +A ID+ +I L+ ++ GPDFPTA I G+ GI+EAY TGRG + +RA+AE Sbjct: 201 GEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAKAE 260 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 + VD + G+ +IIV EIPY VNKARLIE IA+LVK+K++EGIS LRDESD+DGMRIVIE+ Sbjct: 261 I-VD-ENGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVIEL 318 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K+ A V+LN L+ TQ++ +FG+N +AL P ++LK+ I F++HR+EVVTRR+ Sbjct: 319 KKAANANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRRSQ 378 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 FEL+KA+ R HIL L +AL NID + +IR + EAK A ++E+ Sbjct: 379 FELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAK-------------ATLMEK- 424 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Y L+++Q++AILD+RL +LT LE +K+ DE +L+ +IA Sbjct: 425 --------------------YGLSDEQSRAILDMRLARLTALERQKIDDERADLIKEIAH 464 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L +L S ++++I+ EL ++ ++GD+RRT+I ++ +I EDLI E+VVVT+S+ G Sbjct: 465 LNEVLASPQMVLDIIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVENVVVTISNTG 524 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Y+K P+ Y QRRGG G KEEDF+ L VA+THD+IL FS++G+VYS+KVY++ Sbjct: 525 YIKRMPVDTYRTQRRGGVGIVGMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEI 584 Query: 608 -PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 P A+R ARG+ I+NL+ +E E I A++P+ F++ + M T GT+KKT L+ F + Sbjct: 585 PPAASRQARGKAIINLINIEPGEAINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQNI 644 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 R+ G +AI L GDELI V +T+G EV++ + GK RF ES VR MG GV GIRL Sbjct: 645 RSTGIIAIGLESGDELISVKMTNGSQEVLIATRNGKCNRFSESEVRTMGRPAMGVIGIRL 704 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 E DKV+++ + ++LT +NG+GKRT + EY R +G+I+IK T RNG VV Sbjct: 705 TENDKVIAMEIVSPGQSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVVAV 764 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 + V DQI++ + G + R V++I +GRNTQGV +++ +++VV + R+ E+ Sbjct: 765 ISVMPDDQIVIASKEGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKKED 824 Query: 847 DL 848 ++ Sbjct: 825 EI 826 >UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepID=A9GW54_SORC5 Length = 873 Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/826 (52%), Positives = 574/826 (69%), Gaps = 14/826 (1%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 PV+I++EL++SYLDYAMSVI+GRA+PDVRDGLKPVHRR+LY+MN A+KK ARV Sbjct: 12 PVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCARV 71 Query: 70 VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 129 VGDV+GKYHPHGD AVYD +VRM Q FSLRY L+DGQGN+GS+DGDS AAMRYTE RL++ Sbjct: 72 VGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAAMRYTESRLSR 131 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 +A EL+ADL+K+TVDFV NYD +E P V+P K P LLVNGS GIAVGMATNIPPHNL E Sbjct: 132 MAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLGE 191 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 +I+ +A I + D+++E L+ +PGPDFPT +I G+ GI +AY TGRG + +R R++VE Sbjct: 192 IIDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIYGKSGIVQAYTTGRGSITMRGRSQVE 251 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 K RE ++ EIPYQVNKARL+ KIAE +KEKR+EGIS +RDESD++GMRIV+E+K+ Sbjct: 252 KTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVELKK 311 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 D +VVLN LY T LQ +FG+ +++ +G+P +++LKD ++ F+ HRREVVTRR FE Sbjct: 312 DIFPQVVLNQLYRLTDLQATFGVINLSIANGRPAVLSLKDTLSHFIEHRREVVTRRCRFE 371 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 LR+A + ++E L +A ++ID I+ IR + P +A+ L P L + L RAG Sbjct: 372 LRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLP--LRGLGEFLRRAG- 428 Query: 430 DAARPEWLEPEFGVRD--GLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 RP EPE D G Y+L+E+QA+AIL++RL +LTGLE EKL EY EL I Sbjct: 429 ---RP---EPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIER 482 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L IL LM VI ELE ++ +FGDKRRTEI A+I +EDLI +ED+VVT+SH G Sbjct: 483 LRAILADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVVTISHAG 542 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Y+K P S Y AQRRGGKG +EED++ +L VA+TH ++ FS +G+V+ KVY++ Sbjct: 543 YLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYEI 602 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 P+A R A+GR IVN + +E E++ AI PV F+ V T G +KKT L E+ R Sbjct: 603 PQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGETFVVTLTRRGQIKKTALNEYENYR 662 Query: 668 TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG 727 G + +++ +GD+L LT G+ E+++ + G +RF E VR G T GV+GI L Sbjct: 663 DKGIIGVRIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRPTGRATMGVKGIELD 722 Query: 728 EGDKVVSLIVPRGDG--AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 EGD VV L V GDG +L + GYGK+T + E+ +SR KGVI I +ERNG VVG Sbjct: 723 EGDVVVGLGVS-GDGRDRVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERNGPVVG 781 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE 831 V D+++++TD G ++RT+ SEI GRN QGV ++ +DE Sbjct: 782 VAMVSPSDEVLIVTDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDE 827 >UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0LNR4_HALO1 Length = 891 Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/869 (51%), Positives = 597/869 (68%), Gaps = 13/869 (1%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSD+A +TPV IE+E++SS++DYAMSVI+ RALPD RDGLKPVHRR+L+A L N WN Sbjct: 1 MSDIA-NVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWN 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + Y K AR+VGDVIGKYHPHGDS+VYD +VRMAQ FS+RY LVDGQGNFGSIDGD AAM Sbjct: 60 RPYLKCARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+A++A +L+ADL+KETVD+ NYD E P V+PTK+PNLL+NG+SGIAVGMAT Sbjct: 120 RYTECRMARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL E+++ +A ++D D+ E L E +PGPDFPT II+GR GI A+ GRG V Sbjct: 180 NIPPHNLGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRAAHTLGRGAV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IR R + E + R+ I+V E+P+ VNK+R IE A LV++KR++GIS +RDESD+ G Sbjct: 240 VIRGRTQFET-VRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V E+KRDA +VVLNNL+ T LQ SF +NM+A+ G+P++++L+ + F+ HRR Sbjct: 299 IRVVFELKRDANEQVVLNNLFKMTALQTSFNVNMLAIVDGRPQVLSLRSALQVFIEHRRT 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV RR +FELR+AR+R I+E L +A+ ID +IE+IR + EAK L++ ++ + Sbjct: 359 VVRRRCLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSE--RMMGL 416 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 LERAG A E + G +L+ +QAQAILD+RL +LTGLE EK+ EY+E Sbjct: 417 DGFLERAGRPADEVEAVRTA-----GFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRE 471 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L + L ILG +L VI +EL +R+Q+ D RRTEI +I E LI ED+V Sbjct: 472 LWEITDYLEGILGDDVKLRGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMV 531 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT + +GYVK L EY AQ RGGKG A ++DF+ + VA+THDH+L F++ GRVY Sbjct: 532 VTRTRRGYVKRTALDEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVY 591 Query: 601 SMKVYQLPEATRGARGRPIVNLL-PLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 KVY+LP +R ++GRP VN++ L+ DE + +LPV EF + + FMAT GTVKKTV Sbjct: 592 QKKVYELPSGSRISKGRPFVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTV 651 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 F+R+R G AI + DGDEL+ V LT + +V+L + G+ +RF+E VR MG Sbjct: 652 AAAFSRIRVTGIKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPMGREAR 711 Query: 720 GVRGIRLGEGDKVVSLIVPRGDG--AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GVRGI L GD VV + V D AILT +NGYGKRT ++ Y T+ R KG+I+IK T Sbjct: 712 GVRGIGLAGGDAVVGMSVFERDCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTT 771 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 ERNG V G V + D ++MI+ G L+R RV +I + R TQGV L+R E V L+ Sbjct: 772 ERNGPVSGVRLVGEDDHVIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLE 831 Query: 838 RVAEPVDEEDLDTIDGSAAEGDDEIAPEV 866 R+AEP D+ D + + + DDEI EV Sbjct: 832 RLAEPDDDADSEAVTPELGD-DDEIGNEV 859 >UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms RepID=Q2IHQ4_ANADE Length = 907 Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/869 (51%), Positives = 592/869 (68%), Gaps = 68/869 (7%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 VNIE+E++ SYLDY+MSVI+GRALPDVRDGLKPVHRRVLYAM+ G +NK Y K A VV Sbjct: 28 VNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGVV 87 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 G+V+ KYHPHGD++VYD +VR+AQ ++LRY L+DGQGNFGS+DGD AAA RYTE RL ++ Sbjct: 88 GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLERL 147 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 + L+AD++K+TVD+ N+D + P V+PT+ PNLLVNGS+GIAVGMATNIPPHN+ EV Sbjct: 148 SDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 207 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 I+ + I++ ++ LM IPGPDFPTA II GR GI AY GRG + +RAR VE+ Sbjct: 208 IDAAVHLIENPKATVLDLMRFIPGPDFPTAGIIRGRDGIRAAYEKGRGTIQVRARTVVEI 267 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 KT RETI+V EIPYQVNKA+L+E IAELV+EKR+EGIS LRDES ++GMRIVIE+KRD Sbjct: 268 HPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKRD 327 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 A+ +VVLNNLY+ TQ+Q+ FG+ M+A+ GQP+++ LK+++ FV HRR+VVTRRT +EL Sbjct: 328 ALAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYEL 387 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 RKAR+R HIL +AL +ID IIELI+ A D Sbjct: 388 RKAREREHILLGYQIALDHIDEIIELIKKA--------------------------KDRD 421 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 AAR E + + L+E QA+AIL+++LQ+LTGLE +K+LDE E+ I L Sbjct: 422 AARDEMM--------ARFALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKE 473 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 IL S LME+I EL V++ F D+RRTEI + D++ EDLI +E++VVT+SH GYVK Sbjct: 474 ILASEKVLMELIVGELREVKQLFADERRTEIQGEATDLSTEDLIAEEEMVVTVSHLGYVK 533 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 P+S Y AQ+RGG+GK+ A ++EDF++ L VA+TH ++L FS +G+VY +KV+++P A Sbjct: 534 RNPVSLYRAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPA 593 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK------------------------- 645 R A+G+PIVNL+ L E++ AILPV E Sbjct: 594 GRTAKGKPIVNLVQLAPGEKVAAILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPP 653 Query: 646 --VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 VFM T G +KKT L +F R R AG + + + +GDELI LT G ++L +A G Sbjct: 654 AFVFMVTRKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMA 713 Query: 704 VRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG------AILTATQNGYGKRTA 757 +RF+ES VR MG GV+GI L EGD+VV+ +LT T NGYGKRT Sbjct: 714 IRFEESDVRPMGRTAYGVKGITLEEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTE 773 Query: 758 VAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGR 817 +AEY ++R KG+I+IK TERNG VV A V D +++M+IT+AG L+R IS++GR Sbjct: 774 LAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVIGR 833 Query: 818 NTQGVILIRT-AEDENVVGLQRVAEPVDE 845 NTQGV LI +++E VVG+ RVAE E Sbjct: 834 NTQGVRLITLESKEEQVVGVARVAETTPE 862 >UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GYRA_STAAC Length = 887 Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/844 (50%), Positives = 588/844 (69%), Gaps = 40/844 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I NI E++ S+LDYAMSVIV RALPDVRDGLKPVHRR+LY +N G +K+YKKSA Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDGQGNFGS+DGD AAAMRYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 KI EL+ D+ K+T+DF+DNYDG E+ P V+P + PNLL NG+SGIAVGMATNIPPHNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 TE+ING L+ + DISI LME I GPDFPTA +I G+ GI AY TGRG + +R+RA Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIE 306 +E + GR+ I+V EIP+QVNKAR+IEKIAELV++K+++GI+ LRDE+ + G+R+VI+ Sbjct: 249 IE-ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVID 307 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 V++DA V+LNNLY QT LQ SFG+NM+AL +G+PK++NLK+ + ++ H++ VV RRT Sbjct: 308 VRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRT 367 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 + LRKA+DRAHILE L +AL +ID II IR + T Sbjct: 368 QYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDT------------------------ 403 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 D E L+ F L+E+QAQAILD+RL++LTGLE +K+ EY ELL+ I+ Sbjct: 404 ---DKVAMESLQQRF-------KLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYIS 453 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDVVVTLSH 545 EL IL + L++++R+EL +R++FGD RRTEI ++ EDLI +E +V+TLSH Sbjct: 454 ELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSH 513 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 Y+K P+S Y AQ RGG+G EEDF+ +L+ +THDH+L F+++GRVY +K Y Sbjct: 514 NNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGY 573 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTVLTEFN 664 ++PE +R ++G P+VN + LE DE I+ ++ V + E E + AT G VK++ L+ F+ Sbjct: 574 EVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFS 633 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 R+ GK+AI + DELI V LTSG++++++ ++ ++RF ES++R +G TGV+GI Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693 Query: 725 RLGEGDKVVSLIVPRGDGA--ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 L EGD+VV L V + +L T+NGYGKRT V +Y +R KG+ + +TERNG Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 VV V + +M++T+AG ++R V++IS GR QGV LIR +D+ V + +V E Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813 Query: 843 VDEE 846 ++E Sbjct: 814 AEDE 817 >UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organisms RepID=GYRA_STAES Length = 893 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/846 (50%), Positives = 589/846 (69%), Gaps = 42/846 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I NI E++ S+LDYAMSVIV RALPDVRDGLKPVHRR+LY +N G +K YKKSA Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDGQGNFGS+DGD AAAMRYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 KI EL+ D+ K+T+DF+DNYDG E+ P V+P + PNLLVNG++GIAVGMATNIPPHNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 TEVI+G L+ + DI+I LME I GPDFPTA ++ G+ GI AY TGRG + +R+RAE Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIE 306 +E + GR+ I+V EIP+QVNKAR+IEKIAELV++K+++GI+ LRDE+ + G+R+VI+ Sbjct: 249 IE-ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVID 307 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 V++DA V+LNNLY QT LQ SFG+NM+AL +G+PK++NLK+ + ++ H++ VV RRT Sbjct: 308 VRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRT 367 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 + L+KARDRAHILE L +AL +ID II IR + T A +A++ ER Sbjct: 368 EYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIA-------------MASLQER 414 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + LTE+QAQAILD+RL++LTGLE +K+ EY ELL+ I Sbjct: 415 ---------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIK 453 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS-ADINLEDLITQEDVVVTLSH 545 EL IL + L++++R+EL ++E+FGD+RRTEI D+ EDLI +E +V+TLSH Sbjct: 454 ELEEILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSH 513 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 Y+K P+S Y +Q RGG+G +EDF+ +L+ +THDH+L F+++GRVY +K Y Sbjct: 514 NNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGY 573 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVT--EFEEGVKVFMATANGTVKKTVLTEF 663 ++PE +R ++G PI+N + LE DE I+ ++ V E EE VF AT G VK++ L+ F Sbjct: 574 EVPELSRQSKGIPIINAIELENDETISTMIAVKDLESEEDYLVF-ATKQGIVKRSSLSNF 632 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 +R+ GK+AI + DELI V LT+G +++++ +A ++RF ES++R +G GV+G Sbjct: 633 SRINKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKG 692 Query: 724 IRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 I L EGD VV L V + +L T+NGYGKRT V+EY +R KG+ + +TERNG Sbjct: 693 ISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNG 752 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 +V V + +M++T+AG ++R V +IS GR QGV L++ + + V + +V E Sbjct: 753 NIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNE 812 Query: 842 PVDEED 847 D E+ Sbjct: 813 EDDNEE 818 >UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8CZP0_HALOH Length = 816 Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/846 (50%), Positives = 595/846 (70%), Gaps = 38/846 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 ++ V+IE E+K +YLDYAMSVIV RALPDVRDGLKPV RR+LYA++ LG NK +KKS Sbjct: 9 KVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHKKS 68 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVG+V+GKYHPHGD+AVYDT+VRMAQ FS RY LVDG GNFGSIDGDSAAAMRYTE+R Sbjct: 69 ARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMRYTEVR 128 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 +A++ EL+ D++K TVDF N+D + + P+V+P ++PNLL+NG SGIAVGM+TNIPPHN Sbjct: 129 MARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIPPHN 188 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+G +A ID+ D+ ++ LM+ I GPDFPT II G+ I +AY+TGRG++ +R +A Sbjct: 189 LGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRLKVRGKA 248 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 +E D K G+ II+ EIPYQVNKARL+EKIA LV+++++ GIS LRDESD+ G+RIVIE Sbjct: 249 RIEED-KNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRIVIE 307 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K+ V +V+LN LY TQLQV++G+ M+AL G P+++ LK+++ ++ H++EVVTRRT Sbjct: 308 LKKGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKEVVTRRT 367 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 ++L KA RAHILE L +ALANID I++LIR AP A+ L+ N Sbjct: 368 KYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIEN------------- 414 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + LTE+QA+AIL +RLQ+LTGLE +K+ EYKEL ++IA Sbjct: 415 ---------------------FNLTEKQAEAILRMRLQRLTGLERDKIEAEYKELKEKIA 453 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 IL +L+ +I++EL ++E+F D+RRTEI+ + D+++EDLI +E VV+TL+H Sbjct: 454 YYRSILADEGKLLGIIKDELLELKEKFQDERRTEISIQAVDLDVEDLIPEEQVVITLTHH 513 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K P+ Y +QRRGGKG KEEDF++ + +TH + L F+++G+VY ++V++ Sbjct: 514 GYIKRMPIDIYRSQRRGGKGIIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFE 573 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P+A+R ARG IVNLL LE++ERIT ++P+ EF+E + M T NG +KKT L E+ Sbjct: 574 IPQASRQARGTAIVNLLELEEEERITTVIPIREFDEERYLVMVTRNGMIKKTPLAEYES- 632 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 R G + + L D DELI V T G V++ + GK + FKE+ VR+MG GV+ I L Sbjct: 633 RYTGLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSMGRTAMGVKAITL 692 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 +GD VV + V +L T+ GYGKRT + EY +SR KG+I+ +TE+NG + G Sbjct: 693 EDGDYVVGMGVDSEGDDLLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKNGNLAGV 752 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 V + +++IT G ++RTRV IS +GRNT GV +IR E + VV L R++ +E+ Sbjct: 753 KVVREDHDLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISP--EEK 810 Query: 847 DLDTID 852 D++ +D Sbjct: 811 DIEEMD 816 >UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6XJ15_HIRBI Length = 981 Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/941 (48%), Positives = 621/941 (65%), Gaps = 89/941 (9%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 ++P+NI +E+K SYLDYAMSVIV RALPDVRDGLKPVHRR+L++M+ G ++KAYKKSA Sbjct: 43 VSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYKKSA 102 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDVIGKYHPHGD +VYD +VRMAQ FS+ L+DGQGNFGS+DGD AAAMRYTE++L Sbjct: 103 RVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTEVKL 162 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 K+A+ L+AD++K+TV+F +NYDG+EK P V+P + PNLLVNG GIAVGMATNIPPHNL Sbjct: 163 KKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPPHNL 222 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EVI+ +A I+D +I E L+E +PGPDFPT A+I GR G TGRG V +R+++ Sbjct: 223 GEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALIIGRAGSRSGLMTGRGSVIMRSKSS 282 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E + K GRE ++ EIPYQVNKA +IEKIAELV++KR+EGI+ +RDESD+DG+R+V+EV Sbjct: 283 IE-ELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVVVEV 341 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KRDA EVVLN L+ TQLQ SFG+NM+AL+ G+P++++LK I+ AF+ R EVV RRT Sbjct: 342 KRDASPEVVLNQLFRYTQLQTSFGMNMLALNSGRPELLSLKAILQAFIIFREEVVARRTK 401 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 FEL KAR RAH+L LA+A+ANID +I++IRH+P P+ A+ L+ W ++ +++ Sbjct: 402 FELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSLINLI 461 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 D + G L+E+QA+AILDLRLQ+LTGL +++ DE + L D+IA+ Sbjct: 462 ADRRTVANEV--------GEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIAD 513 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L IL S R+ME+I EEL +VRE+F RR++ D++ E I +ED+VV +H G Sbjct: 514 YLDILSSRPRVMEIITEELRVVREEFAIPRRSQFIEAELDMDDEAFIEKEDMVVMFTHGG 573 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Y K LS Y Q RGG+G+S KEED + R VANTH +L FSS G VY KV+++ Sbjct: 574 YAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRM 633 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEE---GVKVFMATANGTVKKTVLTEFN 664 P T +RG+ +VNLLPL++ E IT+++P+ E EE + + AT +G V++ L++F Sbjct: 634 PLGTPQSRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFT 693 Query: 665 RLRTAGKVAIKLVDG------DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCN 717 ++ GK+A+KL + D ++GV + S +D+VML +A G+ +RFK VR G Sbjct: 694 QVNRNGKIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRT 753 Query: 718 TTGVRGIRLGEGDKVVSLIVPR-------------------------------------- 739 +TGVRGIRL GD+V+S++V R Sbjct: 754 STGVRGIRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEP 813 Query: 740 -----GDGAILTA----------------TQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GD A L+ T++G GKR + +Y R KG+I+ K+ Sbjct: 814 DADDEGDEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKLNA 873 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 L A ++D D+IM++TDAG L+RT +I I GR TQGV ++RT+ +E VV ++R Sbjct: 874 GRRL-AAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEERVVSVER 932 Query: 839 VAEP---VDE-EDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 +AE VDE E + +DGSA EI +V +D PE E Sbjct: 933 LAEQESDVDENETEENVDGSA-----EIV-DVAIDGAPEGE 967 >UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GYRA_STRR6 Length = 822 Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/843 (48%), Positives = 578/843 (68%), Gaps = 37/843 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + VN+ +E+K+S++DYAMSVIV RALPDVRDGLKPVHRR+LY MN LG +K +KK Sbjct: 4 KNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+ GDV+GKYHPHGDS++Y+ +VRMAQ +S RYMLVDG GNFGS+DGDSAAA RYTE Sbjct: 64 SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEA 123 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R++KIA E++ D+ K TVDFVDNYD E+ P V+P + PNLLVNG++GIAVGMATNIPPH Sbjct: 124 RMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPH 183 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E I+ +D+ +++ + LME +PGPDFPT A++ G+ GI +AY TG+G + +R+R Sbjct: 184 NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSR 243 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E+E KTGRE I+V E PY VNK ++ E I LV+EKR+EGI+A+RDES+++G+R VI Sbjct: 244 TEIET-TKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVI 302 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 EVKRDA V+LNNL+ TQ+Q +FG NM+A+ +G PKI++L+ I+ A++ H++EVV RR Sbjct: 303 EVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRR 362 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T F+ KA RAHILE L +AL +ID +I +IR + T AEA+ L++ Sbjct: 363 TRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK------------ 410 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E+Q+QAILD+RL++LTGLE +K+ EY +LL I Sbjct: 411 ----------------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALI 448 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA-DINLEDLITQEDVVVTLS 544 A+L IL +R+ ++I++EL+ V+ +F DKRRTE+ + EDLI + DV++TLS Sbjct: 449 ADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLS 508 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 ++GY+K E+ AQ+RGG+G +K++DF+ L+ +THDH+L F+++GRVY +K Sbjct: 509 NRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKG 568 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPV-TEFEEGVKVFMATANGTVKKTVLTEF 663 Y++PE R A+G P+VNLL L++DE I ++ V ++ + +F T +G VK+T + EF Sbjct: 569 YEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEF 628 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 +R G A+ L D DELI V L G+ ++++ + G VRF +S+VR M TGV+G Sbjct: 629 ANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG 688 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 + L EGD VV + +L T+ GYGKRT EYPTK R KG+ + K+TE+NGL+ Sbjct: 689 VNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLL 748 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 G + V + +M+ITD G ++RT ++ IS GR T GV ++R +D +V VA Sbjct: 749 AGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Query: 844 DEE 846 EE Sbjct: 809 KEE 811 >UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8WIN1_EGGLE Length = 932 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/862 (48%), Positives = 587/862 (68%), Gaps = 50/862 (5%) Query: 15 EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 74 +E+++S+L+YAMSVIV RALPDVRDGLKPVHRR+LYAMN G N+ + KSAR VGDVI Sbjct: 93 KEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGDVI 152 Query: 75 GKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 134 GKYHPHGDSAVYDT+VR+AQPFS+R LVDG GNFGSIDGD AAAMRYTE RL K+A EL Sbjct: 153 GKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAMEL 212 Query: 135 MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 194 + DL+KETVDF NYD + + P V+P + PNLLVNGS GIAVGMATNIPPHNL E I+ Sbjct: 213 LRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETIDAT 272 Query: 195 LAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKT 254 +D+ D++ E LM+ +PGPDFPT II G++GI +AY TGRG + +RA+ +VE + K Sbjct: 273 CLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVE-EGKN 331 Query: 255 GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGE 314 GR +I+V EIPYQVN+ RL+EK+ ELV+EK++ IS + D +D+ G+ I+I++K+DA+ + Sbjct: 332 GRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAIPQ 391 Query: 315 VVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKAR 374 VVLN LY TQLQV FG+ M++L G P++++LK+++ ++ H+ EV+ RRT +EL KA Sbjct: 392 VVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAKAE 451 Query: 375 DRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARP 434 +RAHILE L +AL NID +I +IR + T EA M ER G Sbjct: 452 ERAHILEGLIIALDNIDEVIHIIRSSQTDKEA-------------AERMTERFG------ 492 Query: 435 EWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGS 494 LT++Q AIL++RL++LTGLEH+K+ DE KELL++IA R+L Sbjct: 493 ---------------LTDKQTAAILEMRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSD 537 Query: 495 ADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 554 + ++I+EEL V+++FG RRT ++ + D+++EDLI +E +VVT++ GYVK P+ Sbjct: 538 DQLVHDIIKEELSEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPV 597 Query: 555 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 614 + Y Q+RGGKG S +K+ D+++ L VA+TH ++L FS++G+VY +KVY+LPEA+R A Sbjct: 598 ATYRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHA 657 Query: 615 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI 674 RG IVNLLPLE+ E I+A++ +F + AT +G VKKT + ++R R G +AI Sbjct: 658 RGTAIVNLLPLEKGETISAVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAI 717 Query: 675 KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVS 734 L D D LI V + ++V++ S+ GK + + E VRAMG +T GVRG+ + KV+ Sbjct: 718 SLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVPPIAKVLG 777 Query: 735 LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ 794 + + + D + T+ GYGKRT +AEYP R +GV +I +TE+ GL+ V + D+ Sbjct: 778 MEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVAEDDE 837 Query: 795 IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV--------------GLQRVA 840 IM++++ G VRT VS IS +GR+TQGV +++TA+ + V G Q Sbjct: 838 IMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVAISSRGKKKKASGAQVEG 897 Query: 841 EPVDEEDLDTIDGSAAEGDDEI 862 E +DE +D ++ AEG EI Sbjct: 898 EELDENAIDELE-DGAEGTAEI 918 >UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6XXU9_PEDHD Length = 869 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/840 (49%), Positives = 588/840 (70%), Gaps = 43/840 (5%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I ++I+E+++S+Y+DY+MSVIV RALPDVRDGLKPVHRRVLY M LG NK YKKS Sbjct: 12 KIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANNKPYKKS 71 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 AR+VG+V+GKYHPHGD++VY+T+VRMAQ +SLRY++V+GQGN+GSIDGDS AAMRYTE R Sbjct: 72 ARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSPAAMRYTEAR 131 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 KIA +++AD+ K+TVDF N+D + + P V+P+K+PNLL+NGSSGIAVGMATN+PPHN Sbjct: 132 FQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMATNMPPHN 191 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 +TE IN +AYID+ +I+I LM+ I PDFPT AII G G++EA+ TGRG++ +RA+A Sbjct: 192 ITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEAFETGRGRIVMRAKA 251 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 E+E A RE IIV EIPYQVNKA++IE+ AELV EK++EGIS ++DES+KDG+RIV E Sbjct: 252 EIE--AAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGIRIVYE 309 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KRDA +VLNNL+ QT LQ SF +N +AL G+P+++NL+D+I FV HR EVV RRT Sbjct: 310 IKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHYFVEHRHEVVVRRT 369 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL +A+ RAHILE L +AL ++D +I+LIR + TP +A+T L+ Sbjct: 370 KFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLM--------------- 414 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 +FG L++ QA+AILD+ L++LTGLE +K+ DEY EL+ I Sbjct: 415 ------------EKFG-------LSDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIE 455 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 L IL + M++I++EL ++E++GD+RRT I ++ D+++ED I E+VV+T+SH+ Sbjct: 456 YLQSILDDESKRMQIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVITISHE 515 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K P +EY Q RGGKG + + EDFI+ LL+A+ H+++L F+ GR + ++VY+ Sbjct: 516 GYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYE 575 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVT-----EFEEGVKVFMATANGTVKKTVLT 661 +PE TR ++GR I N++ + ++E+I A + V E+ E + M T GT+KKT L Sbjct: 576 IPEGTRLSKGRAIQNIINIPKEEKIKAFIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLE 635 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 ++R R G AI + +GD+L+ LT+G E+++ G+ +RF E VR MG TGV Sbjct: 636 AYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGV 695 Query: 722 RGIRLG-EGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 RG+ L E D+VV +I GA IL ++ GYGKRT + +Y +R KGV +I VT++ Sbjct: 696 RGVTLAHEKDEVVGMIAVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDK 755 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 G +V V D D +M+I +G ++R VSE+ ++GR TQGV LI ++ + + R+ Sbjct: 756 TGNLVAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVARI 815 >UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0H7_SALRD Length = 910 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/869 (48%), Positives = 592/869 (68%), Gaps = 29/869 (3%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P+NIEEE+KSSY+DY+MSVIV RALPDVRDGLKPVHRRVLY M+ LG YKKSA Sbjct: 8 VIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYKKSA 67 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VG+V+GKYHPHGDS+VYDT+VRMAQ FS+RY L DGQGNFGS+DGDSAAAMRYTE R+ Sbjct: 68 RIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMRYTEARM 127 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +IA +++ D+ KETVD +N+DGT + P V+P PN+LVNG+ GIAVGMAT IPPHNL Sbjct: 128 TRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPPHNL 187 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E I+ +AYIDD DI I+ LM+H+P PDFPT II G G+ EAY TGRG+V +RA+ Sbjct: 188 GETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVVMRAKMH 247 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 E + ++GR+ ++V E+PYQVNK+R +E+IA+ V+++R+EGI+ LRDESD+DG+RIVIE+ Sbjct: 248 -EEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRIVIEL 306 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K+ A E+V N +Y ++LQ +FG+NMVAL G+P+++ LKD I +V HR E+V RRT Sbjct: 307 KQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIVVRRTE 366 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW-------QLGNV 420 ++L +A+DRAHILE L +AL ++D +I +IRH+P A+ L A + L + Sbjct: 367 YDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDDDLRTI 426 Query: 421 AAMLERAGDDAARPEWLEPEFGVR--------DGLYYLTEQQAQAILDLRLQKLTGLEHE 472 L G+ + ++ G D +LTE QA AIL LRL +LTGLE E Sbjct: 427 NVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLTGLERE 486 Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA-DINLE 531 K++ EY+++++QI E RIL S DR M +I+EEL V+E+F D+RRTEI DI +E Sbjct: 487 KIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGDDIIIE 546 Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 591 DLI ++ VVVT+++QG K P+ Y Q RGG G +E+DFI+ L V ++HD +L Sbjct: 547 DLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHSHDVLL 606 Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE-------FEEGV 644 F+ +G+ + ++ +++PE R A+GR I L+ ++ D+R+ A++ V++ F Sbjct: 607 LFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEAFLNSH 666 Query: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVV 704 V AT G VKKT L ++R R+ G + IK+ +GD+LI LT G++ V++ S+ G+ V Sbjct: 667 YVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASSGGRAV 726 Query: 705 RFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-VP---RGDGAILTATQNGYGKRTAVAE 760 F E R MG NT GVRG+ L ++V +I VP D +L ++GYGKRTA+++ Sbjct: 727 HFDEGDARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAEHGYGKRTALSD 786 Query: 761 YPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQ 820 Y + R KG+I++ T+R G +V V + +M+IT+ G ++RTRV EIS +GRNTQ Sbjct: 787 YRVQGRGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNTQ 846 Query: 821 GVILIRTAEDENVVGLQRVAEPVDEEDLD 849 GV +I + + + + RVA+ DE + D Sbjct: 847 GVQVIDLKDGDAIADVTRVAD-TDEPEAD 874 >UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2RJ49_PORG3 Length = 859 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/836 (47%), Positives = 566/836 (67%), Gaps = 47/836 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D I ++IEEE+K++Y+DY+MSVIV RALPDVRDG KPVHRRVLYAMN GN + Sbjct: 1 MTDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYT 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +K A VG+V+G YHPHGDS+VY +VRMAQP+SLRY LVDGQGNFGS+DGDS AAM Sbjct: 61 NPTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL++IA E++ D++KETVDF +N+D T + P V+PT+IPNLL+NG+SGIAVGMAT Sbjct: 121 RYTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYID-DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 N+PPHNL+E I+GC+AYI+ D DI +EGLM+++ PDFPT I G G++EA+ TGRG+ Sbjct: 181 NMPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGR 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 V IR+RAE+E E II+ EIPY VNKA L+ IA+L+ EKR++GIS + DES++ Sbjct: 241 VVIRSRAEIE--QHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRK 298 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMRIV+E+KRDA VVLN LY T LQ SF +N +AL G+P+++NLKD+I FV HR+ Sbjct: 299 GMRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQ 358 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVVTRR FELRKAR+RAHILE L +A+ NID +I +IR + AEA + L+ Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLI-------- 410 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 ER + L++ QA++I+D+RL+ LTGLE +KL E++ Sbjct: 411 -----ER---------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFE 444 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 E++ I L +L LME+++ EL ++E++GD R++EI S + N ED +D+ Sbjct: 445 EIMASINHLEALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDM 504 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 ++TLSH GY+K PLSE+ Q RGG G + +EEDF++ + A+ H I+ F+++GR Sbjct: 505 IITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRC 564 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV------TEFEEGVKVFMATANG 653 Y +KVY++PE + A+GR I NLL ++ D+++ A + + EF + T G Sbjct: 565 YWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRG 624 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA 713 +KKT+L F+R R G +AI L D D L+ V LT+G+ ++++ + G+ +RF ES VR Sbjct: 625 IIKKTLLEAFSRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP 684 Query: 714 MGCNTTGVRGIRLGEG--DKVVSLIVPRG--DGAILTATQNGYGKRTAVAEYPTKSRATK 769 G GV+G+ L + D+VV +I + + IL ++ GYGKR+ + +Y +R K Sbjct: 685 SGRTAMGVKGMTLDDDGEDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYRITNRGGK 744 Query: 770 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILI 825 GV ++ +TE+ G +V V D + +M+I +G +R +V+++SI+GR TQGV LI Sbjct: 745 GVKTLNITEKTGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLI 800 >UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X523_FLAB3 Length = 884 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/842 (47%), Positives = 574/842 (68%), Gaps = 46/842 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P+NI +E+KSSY+DY+MSVIV RALPDVRDGLKPVHRRVLY M L N+ + KSA Sbjct: 8 LIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNRKHLKSA 67 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+GKYHPHGDS+VYD +VRMAQP+SLRY VDGQGNFGS+DGD AAMRYTE +L Sbjct: 68 RIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEAKL 127 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 KI+ E++ADL+K+TVDF +N+D + P VMPTKIP LLVNG+SGIAVGMATN+ PHNL Sbjct: 128 KKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATNMAPHNL 187 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 +E I+ +AYID+++I+I+ LM+HI PDFPT II G G+ +A+ TGRG++ +RA+ Sbjct: 188 SESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVLRAK-- 245 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 + + R IIV EIPYQVNKA +I + AELVK++++ GI +RDESD+ G+RIV E+ Sbjct: 246 INFEEVGNRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLRIVYEL 305 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K DA+ VVLN LY T LQ SF +N +AL G+P+ +NLK+II FV HR EVV RRT Sbjct: 306 KHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKGRPEQLNLKNIIHHFVDHRHEVVIRRTE 365 Query: 368 FELRKARDRAHILEALAVALA---NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 FEL+KA++RAHILE + ++D I +IRH+ PAEAK L+ Sbjct: 366 FELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMK------------ 413 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 EF L++ QAQAILDLRL +LTG+E +K+ EY E+++ Sbjct: 414 ---------------EFD-------LSDLQAQAILDLRLARLTGMELDKIRAEYDEIMNL 451 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I + IL + R E+I+ EL ++E++GD+RR+EI + ++++EDLI E VV+T+S Sbjct: 452 IRDFEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDEKVVLTIS 511 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H GY+K LSEY+ Q RGG G AA ++EDF++ ++ A H ++L F+ +G+ + ++V Sbjct: 512 HAGYIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIVAATNHQYMLFFTEKGKCFWLRV 571 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG-----VKVFMATANGTVKKTV 659 +++PE ++ ++GR + NL+ +E D++I A + + ++ + V M T NGT+KKT Sbjct: 572 FEIPEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVMVTKNGTIKKTS 631 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L ++R RT G AI++ D D+L+G LTSG+ E+M+ + GK +RF E RA+G + Sbjct: 632 LEAYSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPEEKARAVGRGSI 691 Query: 720 GVRGIRLGEGDKVVSLIVPRG--DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GVRGI L + D+V+ +IV + +L ++ GYGKRTAV +Y +R KGVI++ +T Sbjct: 692 GVRGISLEDDDEVIGMIVVNDVENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNIT 751 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 E+ G ++ V D D +M+I +G +R ++E+ ++GRNTQGV +I ++++ + Sbjct: 752 EKTGNLIAIQNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVINLKGNDSIAAIA 811 Query: 838 RV 839 +V Sbjct: 812 KV 813 >UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V9C1_DESVV Length = 856 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/859 (47%), Positives = 577/859 (67%), Gaps = 43/859 (5%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++IE+EL+ SYL+Y++SVI+GRA+PDVRDGLKPVHRR+++A + LGN +N+ +KKSAR+V Sbjct: 26 ISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSARIV 85 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 GDVIGKYHPHGDSAVYD IVRMAQ FS+R LVDGQGNFGSIDGD+AAAMRYTE+R++++ Sbjct: 86 GDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 145 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E +AD+EKETVDF NYD T P V+PT++PNLL+NGS+GIAVGMATNIPPHNL E+ Sbjct: 146 AGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLGEL 205 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 N L +DD+ +I+ LM+H+ GPDFPT + +G+ +AY TGRG V +R + E+E Sbjct: 206 CNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEIE- 264 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 + K G + I++ EIPY +NK+ L+EKIA LV E+R++G++ LRDESD+ G+R+VI++KR Sbjct: 265 ERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKRG 324 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 + ++V+N LY T L+ S+GINM+A+ +P++++LK ++ F+ HRRE++ RRT ++L Sbjct: 325 TIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYDL 384 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 RKA RAHILE L +AL NID ++ LIR + TP EAK L ++R G Sbjct: 385 RKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRL-------------MQRFG-- 429 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 L+E Q+QAILD+RLQ+LT LEHEKLLDEY+ELL +I Sbjct: 430 -------------------LSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRS 470 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTLSHQGYV 549 IL + + L +V+REE +R+ + KRRTE+ + + I +EDLI +DVV+TLS +GY+ Sbjct: 471 ILENIEVLRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYI 530 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 K L Y+ QRRGGKG + ++DF+ L H ++L F++ G+++ +KV+Q+ E Sbjct: 531 KRTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAE 590 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA 669 +R A+G I NLLPLE+DE +T +L V EF E T G VK++ + + R R Sbjct: 591 GSRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKG 650 Query: 670 GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 G +A+ L D DELI V +D V+L + G +RF VR MG + TGV+G+ L Sbjct: 651 GLIAVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALSGD 710 Query: 730 DKVVSLIVPRGDGA---ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 D+VV+ V GD I++ + NGYGKRT + Y +SR KGV + +VT + G V+GA Sbjct: 711 DRVVACAVLPGDDTSTEIMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 770 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 + V D + ++++T ++R V E+ VGR T GV+L+R E VVG R VDE Sbjct: 771 MPVRDDEALVLLTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDR----VDER 826 Query: 847 DLDTIDGSAAEGDDEIAPE 865 ++ A + + APE Sbjct: 827 EVVEESAPAQSSEQKTAPE 845 >UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH79_ACIBL Length = 865 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/835 (48%), Positives = 563/835 (67%), Gaps = 33/835 (3%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + I P+NIEEE+K SYLDY+MSVI+GRALPDVRDGLKPVHRR+LYAM+ +G N+ + K Sbjct: 21 QNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHVK 80 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 A+VVG+V+GKYHPHGDSAVYD +VRMAQ FSLRY LVDGQGNFGS+DGD AA RYTE Sbjct: 81 CAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEA 140 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R+ IA EL+AD++K+TVDFV N+D T P ++PTK+PNLL+NGS+GIAVGMATNIPPH Sbjct: 141 RMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPPH 200 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NLTE+++ C+ +++ +++ +++ + GPDFPT I+G+ GI+ AY+ GRG+ +RA+ Sbjct: 201 NLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFIHGKGGIKNAYQNGRGRFMMRAK 260 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 V V+ ++ I+V EIPYQVNK+ LI+KIA+LV +K ++ IS +RDESD+DGMRIVI Sbjct: 261 --VAVEHLPNKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRIVI 318 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+KR A E+VLN LY TQ+Q SF + +A+ + QPK M L + F+ HR +VV RR Sbjct: 319 ELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQPKEMGLVQALNHFIDHRIDVVRRR 378 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T + L+KA+DR HILE +AL ++D +I +IR + A+A+ LVA + G + Sbjct: 379 TFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVA--YFTGKKITI-- 434 Query: 426 RAGDDAARPEWLEPE--FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + + ++PE F R QA AIL+L+L +LT L +++ E K++ + Sbjct: 435 ---NTTGKAPKVDPEKPFSTR---------QADAILELQLHRLTRLSIDEITSELKDVRE 482 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 +IAE IL S +L VI +ELE +R+ +GD+RRT I +A+++LEDLI E V VT+ Sbjct: 483 RIAEYESILASEKKLRSVIVKELEQIRKDYGDERRTIIQDEAAELSLEDLIADEQVAVTV 542 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 SH GY+K P+S Y QRRGG G+ ++EDF++ + VA+TH ++L F++ GRVY +K Sbjct: 543 SHSGYLKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLK 602 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK-VFMATANGTVKKTVLTE 662 VY++PE +G+ I NL+ L+ E + AILPV EE + VF T GTVKKT L + Sbjct: 603 VYEVPEIAAAGKGKHIGNLVALQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVD 662 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 F+ + G +AI + DEL+ LT V L S EG +RF E+ VR MG GVR Sbjct: 663 FSNVMARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADVRIMGRPAYGVR 722 Query: 723 GIRLGEGDKVVSL-IVPR---------GDGA--ILTATQNGYGKRTAVAEYPTKSRATKG 770 G+ +G D +V + I P+ D A IL+ T+NGYGKRT V EY ++R KG Sbjct: 723 GMDIGAKDYIVGMAITPKERKKGKNGGADTANLILSVTENGYGKRTDVDEYRLQTRGGKG 782 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILI 825 VI++K TERNG VV + V + + M+I+ G ++RT I GR+TQGV L+ Sbjct: 783 VINVKTTERNGKVVAIMLVTEDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLL 837 >UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales RepID=GYRA_HELPJ Length = 828 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/850 (47%), Positives = 576/850 (67%), Gaps = 42/850 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + I V I+ ++ SYL Y+MSVI+GRALPD RDGLKPVHRR+LYAM+ LG AYK Sbjct: 9 TKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYK 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDVIGKYHPHGD+AVYD +VRMAQ FS+R LVDGQGNFGSIDGD+AAAMRYTE Sbjct: 69 KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTE 128 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+ K + E++ D++K+T+DFV NYD T K PD++P+++PNLLVNG++GIAVGMAT+IPP Sbjct: 129 ARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPP 188 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 H + E+I+ + + + ++ ++E + GPDFPT II G+ GI EAY+TGRG+V +RA Sbjct: 189 HRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVRA 248 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + V V+ +E I++ E+P+Q NKA+L+E+I++L +EK++EGIS +RDESD++G+R+V Sbjct: 249 K--VHVEKTKNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KRDA+ E+VLN+LY T ++ +F I ++A+++ +PKI L +++ F+ HR+ ++ R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RTIFEL KA+ RAHILE +AL NID I+ LI+ +P+P AK AL+ Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALI------------- 413 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 ER + L+E Q++AIL++RLQ+LTGLE +K+ +EY+ LL+ Sbjct: 414 ER---------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLEL 452 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I +L IL S DRL EV++ EL V+EQF RRTEI + I+ EDLI E +VV++S Sbjct: 453 IDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVVSMS 512 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 ++GYVK L YE Q RGGKGK + E+DFI+ VANTHD +L +++G++Y +KV Sbjct: 513 YKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKV 572 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++PEA+R A G+ IVNL+ L +E+I A L +F + + T NG VK+T L+EF Sbjct: 573 YKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFG 632 Query: 665 RLRT-AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE-GKVVRFKESSVRAMGCNTTGVR 722 R+ +G AI L +GDEL+G + + +L ++ G ++F VR +G T GV Sbjct: 633 GNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRTTRGVM 692 Query: 723 GIRLGEGDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 GIRL E D VV +V D +L+ ++NG GK+T Y +SR KGVI +K+T++ G Sbjct: 693 GIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTG 752 Query: 782 LVVGAVQVDDCD-QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 +V + VDD + +M++T + ++R + +I GRN GV LI TA + VV + Sbjct: 753 NLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSCP 810 Query: 841 EPVDEEDLDT 850 + + E+L+T Sbjct: 811 KEEEPENLET 820 >UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphaproteobacteria RepID=Q2NAD1_ERYLH Length = 931 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/885 (45%), Positives = 564/885 (63%), Gaps = 68/885 (7%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++I +E+K+SYLDYAMSVIV RALPDVRDGLKPVHRR+L+A G + Y+KSA++V Sbjct: 7 IDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAKIV 66 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 GDV+G YHPHGDSA+YD + RM Q +SLR L+DGQGNFGS+D D A+MRYTE RLAK+ Sbjct: 67 GDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLAKV 126 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A+ L+ DL+K+TVDF DNYDG+ K P V+P + PNLLVNG+ GIAVGMATN+PPHNL EV Sbjct: 127 ANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNLGEV 186 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 I+GCLA+I + I+ E LM++IPGPDFPTA +I G+ G AY TGRG V +RAR E+E Sbjct: 187 IDGCLAFIANPAITSEELMQYIPGPDFPTAPLILGQAGARAAYTTGRGSVLMRARHEIE- 245 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 + + R++I+ IPYQV K+ L+EKIA+ KEKR+EGIS +RDES ++G+R+V+++KRD Sbjct: 246 EKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDLKRD 305 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 A EVVLN ++ T Q SF NM+A+ G+P+++ L+DI+ AFV R EV+TRRT FEL Sbjct: 306 ASPEVVLNQIWRYTPAQASFPANMLAIKGGRPEVLTLRDIVQAFVSFREEVITRRTKFEL 365 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 KAR+RAH+L L VA++N+D ++ +IR + P A+ L A W +G++A ++ Sbjct: 366 NKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQLI--- 422 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 E +EP G Y L+E+Q +AILDLRL +LT L +++ DE KEL +I E L Sbjct: 423 ----EAIEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLS 478 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 IL +L V+++EL +++++ R +EI + EDLI +ED+VVT++H GY+K Sbjct: 479 ILADRGKLFGVLQDELVEIKDEYATPRVSEIAPAWDGLEDEDLIAREDMVVTVTHGGYIK 538 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 PL+ + AQ RGGKG+S K+ED + L V +TH+ +L F++ GRVY MKV++LPE Sbjct: 539 RTPLATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPEG 598 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEE---GVKVFMATANGTVKKTVLTEFNRLR 667 + +GRP+VNLLPL DER+T +L + E EE + + AT G V++ + F + Sbjct: 599 SPTTKGRPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNVP 658 Query: 668 TAGKVAIKLVD--GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT-TGVRGI 724 T GK A+ V+ GD LIGV+L S + E+ L S GK +RF + R T GVRG+ Sbjct: 659 TGGKYAMGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGM 718 Query: 725 RLGEGDKVVSLIV-------------------------------------PRGDGAILTA 747 L + KVVS+ V G+ ILT Sbjct: 719 TLKDDAKVVSMAVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEEGEEFILTL 778 Query: 748 TQNGYGKRTAVAEYPTKSRATKGVISIKV----TERNGLVVGAVQVDDCDQIMMITDAGT 803 T NGYGK ++ EY T R +G+ +I ERNG VV + V Q+M++TD Sbjct: 779 TANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGSQLMLVTDQAK 838 Query: 804 LVRTRV-------------SEISIVGRNTQGVILIRTAEDENVVG 835 L+R + S+ GR + GV + A+ E++VG Sbjct: 839 LIRMPIEFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVG 883 >UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacterium RepID=C5JAM2_9BACT Length = 890 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/887 (45%), Positives = 572/887 (64%), Gaps = 60/887 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L +I + +EEE+K SYLDYAMSVIV RALPDVRDG K VHRR+LY + LG D K + Sbjct: 6 LFDDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPH 65 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA +VG+V+GKYHPHGDSA+Y+T+VRMAQ FS+ L+DGQGNFGSIDGDSAAAMRYT Sbjct: 66 RKSALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYT 125 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E R+AKI+ E++ADL+ TV F NYDG+ + P V+PT++P++L+NG+SGIAVGMATNIP Sbjct: 126 ESRMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIP 185 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL E+++ C A +++ + + +ME + GPDFPT I G GI A+RTGRG + +R Sbjct: 186 PHNLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSGILNAFRTGRGSIVMR 245 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 +A VE + K +E I+V EIPYQVNKA+L+EKI EL ++K V+GI +RDES++ G+RI Sbjct: 246 GKASVE-ELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRI 304 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 VIE+KRD +V+LN LY TQLQ++F N++AL G P+ + LK + F+ R +V+ Sbjct: 305 VIEIKRDGNSQVILNQLYKHTQLQMNFSANVLALVKGVPQTLGLKASLTCFLEFRYDVIV 364 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT + L KARD+AHIL A+AL++ID +I LI+ A A L+ W ++ + Sbjct: 365 RRTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSY 424 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 L A + + E G Y L+E QA AILDLRL KLTG+E E++ + + +D Sbjct: 425 L-------ALLQGPQAESG---PYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMD 474 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 I E + ILG +R+ +++ +E + ++ + RR+EI DI EDLI E++VVT+ Sbjct: 475 AIQEYIDILGKPERVRKIMTDEFKTIKADYPTPRRSEILPAEDDIEDEDLIPSEEMVVTI 534 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S GY+K PLS Y AQ RGGKG+S +KEED++ ++VANTHD +L F++ G+VY + Sbjct: 535 SFGGYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIP 594 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVT-EFEEGVKVFMATANGTVKKTVLTE 662 V+QLP T A+GR I+N+LP+E+DE+IT+IL V+ E ++ + T+ G V++ +++ Sbjct: 595 VHQLPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSD 654 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGV 721 F R+++ GK A+ L DG+ LI V ++ V+L + +G +RF + VR G +TGV Sbjct: 655 FERIQSNGKRAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGV 714 Query: 722 RGIRLGEGDKVVSLIVPRG--------------------------------DGA------ 743 RGI+L D ++S V G +GA Sbjct: 715 RGIKLAHDDTIISASVLEGFNVDPAERALYLRARAAERGIQGETEDQDTTVEGALSDERL 774 Query: 744 ---------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ 794 ILT T G+GKRT+ EY T R G I ++ +NG VV A V DQ Sbjct: 775 LELQEHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKNGHVVNAFPVIPQDQ 834 Query: 795 IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 IM+IT+ G L+R V++I I GR TQGVIL+R +DE VV + R+ E Sbjct: 835 IMLITNKGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEE 881 >UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVF2_STRM9 Length = 870 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/851 (47%), Positives = 565/851 (66%), Gaps = 56/851 (6%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + IE+E+K+SYLDY+MSVIV RALPDVRDGLKPVHRR+LYAM+ L + N YKKSAR+V Sbjct: 43 IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKSARLV 102 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 G+V+GKYHPHGDSAVY+++VRMAQ F+ RYMLVDG GNFGSIDGDSAAAMRYTE R++KI Sbjct: 103 GEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDGDSAAAMRYTEARMSKI 162 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ D+ K+T+D+ N+D + P V+P ++PNLL+NG++GIAVGMATNIPPHNL E+ Sbjct: 163 AEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHNLGEL 222 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 +G +A ID+ DISI+ L+ HI GPDFPT II G+ GI AY+TGRGKV + A+ E+ Sbjct: 223 SDGIIALIDNRDISIDELITHIKGPDFPTGGIIYGKSGIYSAYKTGRGKVRVSAKTEIIT 282 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 D K GR++I++ E+PYQVNKA LI++I ELVK+K + GIS L D S+ +G+RIVI++K+ Sbjct: 283 DKK-GRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVIDIKKG 341 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 E+VLN L T LQ +FGI M+AL + PKI+NLK+I+ ++ HR +V+TR+TIF+L Sbjct: 342 EEAEIVLNKLLKFTDLQTTFGIIMLALVNNAPKILNLKEILEKYLEHRYDVITRKTIFDL 401 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 KA+DRAHILE L AL +ID II +IR + T A AK +L+A Sbjct: 402 NKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAK----------------- 444 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 + TE Q AILD+RL +LTGL E++ EY +L+ I +L Sbjct: 445 -----------------FEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLMLFITDLED 487 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 IL +R +I+EE+ +++++GD RRT I + +IN+EDLI EDV+VT++ +GY K Sbjct: 488 ILAKDERKYAIIKEEVLELKQKYGDARRTSIENDRYEINIEDLIKNEDVIVTITKRGYAK 547 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 L Y+AQ+RGGKG S E+D + L A T D ++ FS +G+VYS+KVY++PE Sbjct: 548 RMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEV 607 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK-VFMATANGTVKKTVLTEFNRLRTA 669 ++ ARG+ I N++ L+++E+I+ I+PV E E + + T NG KKT ++EF + Sbjct: 608 SKQARGKLIGNIIELDENEKISVIIPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRN 667 Query: 670 GKVAIKLVDG-DELIGVDLTSG--EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 GK+AI D DE+ V +TSG +DE+ + + G VRFKE +R+MG GVR I+L Sbjct: 668 GKIAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSMGRTAAGVRAIKL 727 Query: 727 GEGDKVVSLIVPRGDG-----AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 D+VVS V D ++L+ T G GK+T ++EY R KGV + + R+ Sbjct: 728 NSNDEVVSADVIYTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSK 787 Query: 782 ------LVVGAVQVDDCD------QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 VV + +D D +++ I+ GT++R ++ ++ +VGRN++GV + Sbjct: 788 EESEHHYVVYSTIIDPSDENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKY 847 Query: 830 DENVVGLQRVA 840 E +V RVA Sbjct: 848 KEYLVSADRVA 858 >UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1UZ45_PELUB Length = 849 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/843 (45%), Positives = 558/843 (66%), Gaps = 27/843 (3%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + I +++ +E+ SSYL YAMSVIV RALPDVRDGLKPVHRR+L+AM G DW+K ++K Sbjct: 10 KNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFRK 69 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VGDVIGKYHPHGD +VYD +VRM Q FS+ LV GQGNFGSIDGD AAAMRYTE Sbjct: 70 SARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTET 129 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RLAK++ L+ D+EK+T+++ NYD TEK P V+P + PNLLVNG+ GIAVGMAT+IPPH Sbjct: 130 RLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPPH 189 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+I+G LA I+++DI I+ LM+HIPGPDFPT +I G+ I+ Y GRG IR Sbjct: 190 NLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAGYNVGRGSFKIRGE 249 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 VE K GRE +++ +PYQVNK+ L E+IA+LV+EK++EGI +RDES+++G+R+ I Sbjct: 250 ISVEAQ-KNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVAI 308 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 +++ E + LY T ++ SFG N +A+ G+PKI +LK+ + F+ R +VV ++ Sbjct: 309 DLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICDLKEFLTNFLTFREDVVIKK 368 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T F+L+KA DRAHIL L+V++ N+D II++IR + TP +AK +L+ W++ ++ Sbjct: 369 TKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKLIS 428 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 D + LY L++ Q AIL+LRLQKLT L ++ E K+L D I Sbjct: 429 LVEDKKEK------------NLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLI 476 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 +I+ S L+ VI EEL+ ++E+F RRT+I + ++E+ I +E V++T++ Sbjct: 477 KGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVIITVTL 536 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 QGY+K LS + Q+RGGKGKS ++ED + + L NTH +L FS+ G VY +K + Sbjct: 537 QGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAW 596 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662 ++PE + ++G+ + N+LPL+ + I++I+P + E K + ATA G V+K L + Sbjct: 597 KIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLED 656 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGV 721 F+ + +AGK+AIKL D+++GV++ + +VML + GK +RF+ +R G ++ G+ Sbjct: 657 FSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGI 716 Query: 722 RGIRLGEGDKVVSLIV---------PRGDG-AILTATQNGYGKRTAVAEYPTKSRATKGV 771 +GI L D++VSL + + DG +L+ T+NGYGK+T EY +R KG+ Sbjct: 717 KGIELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVTNRGGKGI 776 Query: 772 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE 831 I I + RNG + + V + D +M+ T+ G ++R V EI GRNTQGV +I+ + DE Sbjct: 777 IGIVNSPRNGSICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDE 836 Query: 832 NVV 834 VV Sbjct: 837 KVV 839 >UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZEE7_NATMA Length = 861 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/824 (49%), Positives = 559/824 (67%), Gaps = 40/824 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 AR + V IE+E++ SY+DYAMSVI GRALPDVRDGLKPVHRR+LYAM+ +G +++ Sbjct: 28 ARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSHR 87 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KS+ +VG+ +G YHPHGDSA+YDT+VRMAQ FS+RY LVDGQGNFGS+DGD AAA RYTE Sbjct: 88 KSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAPRYTE 147 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+A ++ EL+ D++K+TVDF NYD + PDV+P+ PNLLVNGSSGIAVGM+TNIPP Sbjct: 148 ARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIPP 207 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EVI+ + IDD D ++E LMEH+ GPDFPT A I GR I AY+TGRG++ +RA Sbjct: 208 HNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIVGRDAIYSAYKTGRGRIRVRA 267 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 EVE + K GRE I++ E+PYQ NKARL+E+IAE V E +EGIS LRDESD+DG+RIV Sbjct: 268 EFEVE-EWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIV 326 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +E KR A EVV N L + L+ +FG+ +AL GQP++++LK+ + ++ HRREVV R Sbjct: 327 VECKRGANVEVVKNKLL-ENHLEKTFGVINLALVDGQPQVLSLKETLEEYIAHRREVVRR 385 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R+ ++L +A DRAHILE A+ N + +++LIR++ T +AK AL Sbjct: 386 RSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQE------------ 433 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Y + +QA I+ ++L LT +E ++ DEY+++ + Sbjct: 434 ----------------------AYDFSAEQATHIVRMQLGSLTSMEAAEIEDEYEDVQAE 471 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I L IL S L+ VI++EL +++++ D RRT I + + EDLI +E+V V ++ Sbjct: 472 IERLTSILESEQELLAVIKDELSEIKDEYDDDRRTSIIEDQGTVTHEDLIPEEEVFVVMT 531 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 YVK P+S+++ Q RGGKG A +KE+D + + ANTHD++LCF+++G+VY +K Sbjct: 532 EDDYVKRMPISQFDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKT 591 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++PE R ARG+ VN+L L+ E ITAI+ F + V MAT +G VK+T +EF+ Sbjct: 592 YEIPEMGRTARGKSAVNILDLDPGEDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFD 651 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +R+ G +A L +GDEL+ V++T G ++++ S G +RF E VRAMG N GV GI Sbjct: 652 NIRSTGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAMGRNARGVNGI 711 Query: 725 RLGEGDKVVSLIVPRGDG---AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 L +GD V+ +V +G +LT TQNGYGKRT ++EY T+SR KG+I IK ERNG Sbjct: 712 DL-QGDDAVAGLVATDEGDEQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNG 770 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILI 825 V A V DQ++M+++ G +VRTRV EIS VGRNT GVI++ Sbjct: 771 PVTTAKAVSADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVM 814 >UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepID=Q2GCH4_NEOSM Length = 869 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/876 (45%), Positives = 568/876 (64%), Gaps = 43/876 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I PVN+E+ELKSSYL YAMSVI+ RA+PDVRDGLKPVHRR+LY+MN L WNK Y+KSA Sbjct: 4 IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RV+G+VIGKYHPHGDSA+YD +VRMAQ FSL L+DGQGNFGSIDGD AAAMRYTE+RL Sbjct: 64 RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 I+ L+ DL + +VDF NYD +E P V+P K PN+LVNG++G+AVGMATN+P HNL Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 +EVI C Y+++ +++ + L++ I GPDFPT +I G GI+ ++ +GRG + IR++ Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSKTH 243 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 E + + G+ IIV E+PYQVNKA+LIE IA LVKEKR++ IS LRDES+K+G+R+VIE+ Sbjct: 244 FE-ETEAGK-AIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIEL 301 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KR A EVVLN L+ TQLQ S+ NMV L + +P +M+L+DI+AAF+ HR+EV++RRT Sbjct: 302 KRGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRTE 361 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F L KAR++A++L AL VA+ NID ++ +++ + A AL A W + LE Sbjct: 362 FRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDE---ELELL 418 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + + + L E Y L+ Q++AIL++++Q++T E +L+ E +D + E Sbjct: 419 VETISNIKLLNRE-------YKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKE 471 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITAN-SADINLEDLITQEDVVVTLSHQ 546 ILGS L VI EL ++ ++ R++ I N +A EDLI +E VVVT ++ Sbjct: 472 CASILGSEAVLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYS 531 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K +S Y QRRGGKG+ A IK ED + ++ V +THD IL FSSRG+VY +K Y+ Sbjct: 532 GYIKRVHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYK 591 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 LP +RGR +VN+ L DE IT+ILP+ + +F+ TA G VK+ +++F + Sbjct: 592 LPIGEPQSRGRALVNIFDLADDESITSILPLKSSDAENLIFL-TAQGKVKRNSMSDFAYV 650 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-GVRGIR 725 GKVAI+L D D LI V ED V + + +GK +RF +R + ++ GV+ I Sbjct: 651 PANGKVAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAIT 710 Query: 726 LGEGDKVVSL------IVPRGDGA---------------------ILTATQNGYGKRTAV 758 LG+ D +SL ++ D A +LT T+NGYGK T+ Sbjct: 711 LGKDDNAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKITSS 770 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRN 818 EY +R G+I+I +ERNG VV + +V + IM++T+ G ++R + I ++GRN Sbjct: 771 YEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVTNRGQVIRIEANNIPVLGRN 830 Query: 819 TQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854 TQGV L +E V + V E V+++D +T + Sbjct: 831 TQGVRLFSIRAEERVASVTEV-EEVEDDDSETTENC 865 >UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MRF5_9FIRM Length = 878 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/839 (44%), Positives = 569/839 (67%), Gaps = 11/839 (1%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 S ++ V+IE+E++ S+L Y+M+V+V RALPDVRDG+KPVHRR++Y MN N + Sbjct: 8 FSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSS 67 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K Y+K A VG+V+GKYHPHGD++VYD +VR+AQ FS+RY L+DG GNFGS+DGD AA Sbjct: 68 KPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAY 127 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+AKIA EL+ D++K+T+D+ NYD P V+P K PNLLVNGS GIAVGMAT Sbjct: 128 RYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMAT 187 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EV + +A +D+ + SIE ++++I GPDFPT II G GI AY TGRGK+ Sbjct: 188 NIPPHNLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKI 247 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R +AE+ + R IIV EIPY VNK++L+E +L+++KR+EGIS LRDESDKDG Sbjct: 248 TLRGKAEIVEEGNHSR--IIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDG 305 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIV E+KRD +VVLN LYS TQLQ + G+ M+AL +G+PK + L +I+ ++ +++ Sbjct: 306 MRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQ 365 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++TRRT F+L+KAR+RAHIL+ +A+ NID +I ++R + + E K L+ ++ ++ Sbjct: 366 IITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMER-FKEDDL 424 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 A +L+RA + + E E G L+E+QA AI+ +RL +LTGLE +K++ E E Sbjct: 425 AKLLQRAMGENYKDVHFEHEIG-------LSEEQADAIVQMRLGQLTGLERDKVISELAE 477 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 ++++I + L IL S +R+ E+I+EE+ ++E++GD+RRT I S ++++EDLI +E+ V Sbjct: 478 IMEKINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECV 537 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T ++ GY+K QP+ Y Q+RGGKG S + +EEDF++ + +++THD+IL ++ G +Y Sbjct: 538 LTYTNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMY 597 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +K Y++PE ++ +RG IVNLL L++ ERI A++ ++F E T G +K+T L Sbjct: 598 KLKCYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPL 657 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +F +R G AI L +GDE+ LT G+ +++ + G + F E +R+MG G Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAG 717 Query: 721 VRGIRLGEGDKVV-SLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 VR I+L E D +V + V D ILT T GYG+ +A+++Y ++R G+ + K+ + Sbjct: 718 VRAIKLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDD 777 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 G V G + D +++I+ G ++R R +++ ++ R GV +++ ++++ VV R Sbjct: 778 RGYVCGIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTR 836 >UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYRA_MYCS2 Length = 842 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/862 (45%), Positives = 567/862 (65%), Gaps = 48/862 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I PV+I++E++ SY+DYAMSVIVGRALP+VRDGLKPVHRRVLYAM G ++++ KSA Sbjct: 16 IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSA 75 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R V + +G YHPHGD+++YDT+VRMAQP+SLRY LVDGQGNFGS D AAMRYTE RL Sbjct: 76 RSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARL 135 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +A E++ ++++ETVDF+ NYDG + P V+P++ PNLL NGS GIAVGMATNIPPHNL Sbjct: 136 TPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNL 195 Query: 188 ---TEVINGCLA-YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 E + CL Y DE+ + E +ME + GPDFPT+ +I G +GIE+ Y+TGRG + +R Sbjct: 196 GELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQGIEDTYKTGRGSIKMR 255 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-DKDGMR 302 E+E D++ GR +I++ E+PYQVN I IAE V++ ++ GIS + D+S D+ G+R Sbjct: 256 GVVEIEEDSR-GRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLR 314 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IV+E+KRDAV +VVLNNLY TQLQ SFG NM+++ G P+ + L +I +V H+ +V+ Sbjct: 315 IVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVDHQLDVI 374 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT + LRKA +RAHIL L AL +D +I LIR + T A+ L+ Sbjct: 375 VRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLI----------- 423 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 E L+ + + QAQAILD++L++L LE +K++D+ ++ Sbjct: 424 ------------ELLD-----------IDDIQAQAILDMQLRRLAALERQKIVDDLAKIE 460 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 +IA+L IL +R ++R+EL+ + ++ GD RRT I +++ EDLI +EDVVVT Sbjct: 461 AEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAREDVVVT 520 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 ++ GY K Y +Q+RGGKG A +K++D ++ V +THD IL F+++GRVY Sbjct: 521 ITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRA 580 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 K Y+LPEA+R ARG+ + NLL + +ERI ++ + +E+ + +AT NG VKK+ L++ Sbjct: 581 KAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSD 640 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK--ESSVRAMGCNTTG 720 F+ R+ G VAI L +GDEL+G L S ED+++L SA G+ +RF + ++R MG T+G Sbjct: 641 FDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSG 700 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+G+R E D+++SL V R D +L AT GY KRT++ EY + R KG+++I+ + Sbjct: 701 VQGMRFNEDDRLLSLNVVRPDTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKR 760 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR-- 838 G +VGA+ VDD ++ IT G ++RT ++ GR T+GV L+ AE + ++ + R Sbjct: 761 GSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIAIARNA 820 Query: 839 ----VAEPVDEEDLDTIDGSAA 856 AE + E D DT + A Sbjct: 821 DEDEAAESISESDADTAESPEA 842 >UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepID=C8PKZ3_9PROT Length = 914 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/891 (46%), Positives = 575/891 (64%), Gaps = 99/891 (11%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +EI +++EE +K+SYLDY+MSVI+GRALPD RDGLKPVHRR+LYAMN LG + YKK Sbjct: 9 QEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRQPYKK 68 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VGDVIGKYHPHGD+AVYD +VRMAQ FS+R VDGQGNFGSIDGD AAAMRYTE Sbjct: 69 SARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAAMRYTEA 128 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R+ +A EL+ DL+KETVDFV NYD + PDV+P ++PNLL+NGSSGIAVGMATNIPPH Sbjct: 129 RMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIPPH 188 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 +L E++ G L +++++ S+E +M I GPDFPT II G++GI EAY+TGRG+V IRA+ Sbjct: 189 SLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIYGKKGIIEAYKTGRGRVKIRAK 248 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 +E K ++ I++ E+PYQ NKARLIE+IA+LVKEK++EGIS +RDESD+DG+R+VI Sbjct: 249 THIE--KKASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRDGIRVVI 306 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+KRDA+ E+VLNNL+ QT ++ +FG+ M+A+ +PKI L +++ F+ HR+ V+ RR Sbjct: 307 ELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDGKEPKIFTLIELLKLFLNHRKTVIIRR 366 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 TIFEL+KAR RAHILE L +AL NID +I++IR++ A+ L++ Sbjct: 367 TIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSR------------ 414 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E Q+ AILD+RL +LTGLE EK+ +E KE+L +I Sbjct: 415 ----------------------FDLSEAQSGAILDMRLSRLTGLEREKIEEELKEILAEI 452 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 L IL S + + +I++EL ++++F R TEI + DI++EDLI E++VVT++H Sbjct: 453 KRLDAILKSEELIEGIIKDELLEIKDKFKCPRITEIVDDYEDIDIEDLIANENMVVTITH 512 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 +GY+K P YE Q+RGGKG+ A ++DFI+ +NTHD ++ + RG++Y +KVY Sbjct: 513 RGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVY 572 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 ++PE +R A+G+ +VNL+ L DE+I AI+P T+F+ + T NG VK+T L+EF Sbjct: 573 KIPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKSLVFFTRNGIVKRTNLSEFKN 632 Query: 666 LRTAGKVAIKLVDGDELI---------------------GVDLTSGE------------- 691 +R+ G AI L + D L+ G DL GE Sbjct: 633 IRSLGIRAISLDEDDTLVTALIAPNSAEEMQNYKGGALSGDDLDGGEAEEILEQTEQDIL 692 Query: 692 -------------------------DEVMLFSA--EGKVVRFKESSVRAMGCNTTGVRGI 724 +E MLF A +G ++F + +R MG GV+GI Sbjct: 693 EGSEDEISDEISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGI 752 Query: 725 RLGE-GDKVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 + E GD+V+ D IL+ +Q G GKRT +EY +R KGVI +K+T R G Sbjct: 753 KFKEKGDEVIGAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGE 812 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 ++G V VD+ +M +T +G ++R + I GRNT GVI++ D+ V Sbjct: 813 LIGVVMVDEEMDLMALTTSGKMIRVDMQSIRKAGRNTSGVIVVNVEGDDVV 863 >UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R591_9CHLA Length = 865 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/849 (46%), Positives = 550/849 (64%), Gaps = 40/849 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I P N+E+E+K SYL Y+MSVI+ RALPD RDGLKP RR+LYAM L ++K A Sbjct: 9 IVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCA 68 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++ GD G YHPHG+ +Y T+VRMAQ + +RY LVDGQGNFGS+DGD AAMRYTE RL Sbjct: 69 KISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARL 128 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 + +LM DL+K TV+ V NYD T+K P V P K PNLL NGSSGIAVGMATNIPPHNL Sbjct: 129 THASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIPPHNL 188 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+I L + + +SI+ +M +P PDFPT II G RGI+EA+ TGRG++ +RA Sbjct: 189 NELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYRGIKEAFHTGRGRLLLRAVIR 248 Query: 248 VEVDAKT-GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 VE + + ++ +IV EIPY VNK+RLIE+IA+L+ K + GI+ LRDESDKDGMRI+IE Sbjct: 249 VEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMRILIE 308 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KR + EV+LN L+ + LQ++FG NM+AL G PK+MN+K +IAA+V HR EVV RRT Sbjct: 309 LKRGEIVEVILNQLFKYSDLQITFGCNMLALDKGLPKVMNVKQLIAAWVDHRIEVVRRRT 368 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL KA RAHILE A+ ++D ++ +IR + EA+ L+ Sbjct: 369 RFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQR------------- 415 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + LTE+QA A+LDL+L +LTGLE+EK+ +EY+ELL +I Sbjct: 416 ---------------------FDLTERQANAVLDLKLYQLTGLEYEKINEEYRELLQKID 454 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 L +L S + ++IREEL +++ R+T+I A +++N+EDLI E V++T+S Sbjct: 455 YLRAVLASEAMVRDIIREELLEIQKNHRSGRKTQIIAAESEVNMEDLIANESVIITISED 514 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 Y+K P+ + QRRGG+G + +K EED I L VA+THD++L F++ GR Y +KV+ Sbjct: 515 DYIKRMPVDTFREQRRGGQGIAGMHLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVW 574 Query: 606 QLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Q+PE R ++G+P++NLL + DE+I +L V+ FE+ + MAT G VKKT L+EF+ Sbjct: 575 QIPETGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQAYILMATKKGIVKKTELSEFS 634 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 R G A+ +V+GDE++ L S ++MLF+ G VRF + VR MG GV+G+ Sbjct: 635 HPRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRPMGRTARGVKGV 694 Query: 725 RLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 L + D VV G IL +NG+GKR+ V ++ +R GV SI +ERNG V Sbjct: 695 TLKDDTDYVVGCEAVNGTETILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERNGNV 754 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR--VAE 841 VGA+ V D D ++M++ G VR + ++ ++GRNTQGV L E + +V +Q+ V++ Sbjct: 755 VGALCVTDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQKLEVSD 814 Query: 842 PVDEEDLDT 850 VD +DT Sbjct: 815 DVDNAKVDT 823 >UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PS29_9SPIO Length = 838 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/852 (45%), Positives = 568/852 (66%), Gaps = 42/852 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P++IE E+K +Y+DY+MSVIV RALPDVRDGLKPVHRR+LY+M ++ +K A Sbjct: 12 LIPISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCA 71 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VGDV+G YHPHGD++VYD +VR+ Q FSLRY ++ QGNFG+I GD AA RYTE ++ Sbjct: 72 KIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A++A ++ D++K+TVDF+ N+D + + P V+P K P LL NGSSGIAVGMATN+PPHNL Sbjct: 132 ARLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNL 191 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+ AYID+ DI+I+ L ++I GPDFPT II G++GI +A++TGRGK+ +R R Sbjct: 192 REIAQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIFGKKGIRQAFKTGRGKILVRGRFN 251 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 +EVD K G+ETII E+PYQVN L+ KI EL +EK +EGI+A+ DE SD+ G+R+VIE Sbjct: 252 IEVD-KKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIE 310 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KR A+ +VVLN L+S+T LQ SFG+ +AL G+P+ + LK ++ FV HR+EVVTRR Sbjct: 311 LKRGAIAKVVLNQLFSKTALQSSFGVINLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRV 370 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F+L+KA +RAHIL AL VA+ NID +I++IR + A AK AL +ER Sbjct: 371 RFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNAL-------------MER 417 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + + QAQAI+D++L++LT LE E L E +EL I Sbjct: 418 ---------------------FSFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELEVLIE 456 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA-DINLEDLITQEDVVVTLSH 545 L +L ++++ +I++E + E+FGD RRT+I ++ +IN+EDLI +E +VV +S+ Sbjct: 457 HLKDLLAHPEKILALIKQETNELAEKFGDDRRTDIVSDEVEEINIEDLIKKEQMVVLVSN 516 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K P++ Y+ Q RGGKG ++A + E+DFID++ A+THD+I+ ++ G+ Y +KV+ Sbjct: 517 LGYIKRVPVTAYKRQNRGGKGSNSAALVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVH 576 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 ++PEA+R +RG I +LL + DE IT I+ + EF + MATA G VKK F Sbjct: 577 EIPEASRTSRGSHIKSLLAVSSDEEITTIVSLKEFSSDTYLLMATAGGIVKKVQTDSFQN 636 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +T G +AIKL +GD+L+ LT+G+DE+ML + +G+ +R E+ +R G + GV GIR Sbjct: 637 AKTRGIIAIKLDEGDKLVSAILTTGKDELMLVTRQGQALRVSEAEIRDQGRASHGVIGIR 696 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L GD++ + +G +L ++NGYGKR +E+ R T G VTE+ G VVG Sbjct: 697 LSGGDELTGAL-RINNGKLLVMSENGYGKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVG 755 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 + V D D+I+ IT G +R +VS I+++GR QGV ++ + ++GL VA Sbjct: 756 LLAVADDDEIVCITGQGKTIRVQVSSINVMGRAAQGVRILDIESPDQLIGLDVVA----R 811 Query: 846 EDLDTIDGSAAE 857 ED ++I +A+E Sbjct: 812 EDEESITPAASE 823 >UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYRA_MYCGA Length = 846 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/866 (45%), Positives = 569/866 (65%), Gaps = 46/866 (5%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 +I +EL++S+++YAMSVIV RALP+ RDGLKPVHRRVLY G +K Y+KSA++VG Sbjct: 22 SITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVG 81 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 131 V+GKYHPH DSA+Y+T+VRMAQPFSLRYML+DG GNFGSIDGDSAAAMRYTE RL+KI+ Sbjct: 82 HVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKIS 141 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 E++ +++K+TVDFVDNYD +E+ P V+P+ PNLL NGSSGIAVGMATNIPPHNL+E+I Sbjct: 142 AEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNLSELI 201 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 G + +E+ +IE L E I GPDFPTAA I G GI E + TGRG V +RA++E+E + Sbjct: 202 GGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSEIE-E 260 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 + I++ +IPY VNKA LI KIAELVK ++++GI+ LRDES+++G+RIVIE KRD Sbjct: 261 LANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETKRDV 320 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 + EV+LN LY TQLQ +F + M+AL + QPK++NLK+ + ++ H+ +++ R+T FEL+ Sbjct: 321 IPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNFELK 380 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 KA+ AHI+E L +A NID +IE I++A +AK L+ Sbjct: 381 KAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTK------------------ 422 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 Y L++ QA+AILD+RL+ L+GLE E L E +L + I +L I Sbjct: 423 ----------------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEI 466 Query: 492 LGSADRLMEVIREELELVREQFGDKRRTEITAN-SADINLEDLITQEDVVVTLSHQGYVK 550 L + +R +++I ++L+ + +FGD+RRT+I ++ I+ E LI E VV+T S +GY+K Sbjct: 467 LQNKERRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLK 526 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 P+S Y+ Q RGG G E+D ++ L+V +TH +L F++ G+VY ++ +Q+P Sbjct: 527 RIPISAYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLG 586 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG 670 +R ++G P +NL+ +E+DE++ ++L + +++ G F +T G VK+ +EF+R++ G Sbjct: 587 SRISKGIPAINLISIEKDEKLMSLLSINDYDSGY-FFFSTKKGLVKRVKASEFSRIQNNG 645 Query: 671 KVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL-GEG 729 K+AIKL + D L V T+G++E+ + + G +VRFKE VR+MG GV G++ Sbjct: 646 KIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPN 705 Query: 730 DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV 789 D+V+ L +L + G GK T EY +R +KGVI+IKVT + G ++ V Sbjct: 706 DEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNIINTQLV 765 Query: 790 DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLD 849 + ++++MI+ G +VR ++E+S GRNT GV LI E E LQ VA D E Sbjct: 766 NGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKET---LQSVA-IFDVEQ-- 819 Query: 850 TIDGSAAEGDDEIAPEVDVDDEPEEE 875 D S G D E+ DD +++ Sbjct: 820 --DDSQQVGSDNPDTELSSDDSNQDQ 843 >UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9RT53_DEIRA Length = 812 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/847 (47%), Positives = 569/847 (67%), Gaps = 47/847 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I PV+I E+K+++++YAM+VIV RALPDVRDG+KPV RR++YAM G N + KSA Sbjct: 4 IQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 VVG+V+ +YHPHGDS++YD +VR+ Q +++RY LVD QGNFGS+DGD AAAMRYTE R+ Sbjct: 64 SVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEARM 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 K+A E++ADLEKETVD NYD T P V+P+ +PNLL+NG+SGIAVGMATNIPPHNL Sbjct: 124 TKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 TE+ NG LA ID+ I+++ +M H+ GPDFPT I + GI EAY TG + +R +A Sbjct: 184 TEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI-AKVGIREAYATGHAGLKVRGKAR 242 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIE 306 +E + K GR II+ EIPYQ+NK L++ I+ + K ++ I ALRDESD K+ +RIVIE Sbjct: 243 IE-EGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301 Query: 307 VKRDA--VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +KR A +G +VLN LY TQLQ S+ + +++ +G+P+++ L D + F+ HRR+VVTR Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNGEPRVLPLIDTMRYFLDHRRDVVTR 361 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT+++LRKA++RAH+LE L AL +ID +I LIR + T AEA+ L+A Sbjct: 362 RTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMA------------ 409 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 FG L+E QAQAILD+RLQ+L GLE EKL EY EL Sbjct: 410 ---------------RFG-------LSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKT 447 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I L ILG L I++E+ +R+++GD RR+ IT DIN EDLI ED+V+T++ Sbjct: 448 ITRLESILGDEKLLWREIKKEIRDIRDRYGDARRSVITELEEDINKEDLIAVEDMVITMT 507 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GYVK L+ Y Q+RGG+G S +++EED + V +THD++L F+ +GRV+ K+ Sbjct: 508 RAGYVKRTNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKI 567 Query: 605 YQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 Y LPEA R A+G I NLLP L DE I ++L V+ F++ AT +G +KK+++T++ Sbjct: 568 YDLPEAGRDAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGSFIFATKSGVIKKSLITDY 627 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + +AG +AI L GDELIGVD+ D+V+L + G+ +RF+ + VR G T GV G Sbjct: 628 ANITSAGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDTGRATQGVIG 687 Query: 724 IRLGEGDKVVSL-IVPRGD--GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 IRL EGD+VVS+ +VP D G +L ++ G GKRT V++YP+K R GVI++ VT++ Sbjct: 688 IRLREGDEVVSMALVPGNDEEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKT 747 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G +V V +++M++T+ GT++RTRV E+ + GRN QGV +I + + V+ A Sbjct: 748 GKLVTLAHVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVID----A 803 Query: 841 EPVDEED 847 P+ +ED Sbjct: 804 FPIRKED 810 >UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0S912_LEPBA Length = 843 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/830 (46%), Positives = 543/830 (65%), Gaps = 40/830 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + PV IE+++K +YLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMN ++ Y KSA Sbjct: 35 VIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSA 94 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VG+VIG YHPHGDSAVY+T+VRMAQ FS+R L+DGQGNFGS+DGD+AAA RYTE RL Sbjct: 95 KIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEARL 154 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 K+A EL+ D+EK TV F N+D T + PDV+P PN+LVNGS+GIAVGMATNIPPHNL Sbjct: 155 TKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHNL 214 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E +N +A I + DI++ LM+ +PGPDFPT I G G+ +AY TG+G + IR++ + Sbjct: 215 KEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIGGEGLYQAYATGKGSIRIRSKVD 274 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 + ++ GRE I++HEIPYQVNK ++EKI +LV EK +EGIS + D SD+ G+R+ I V Sbjct: 275 I-IENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHV 333 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K+DA +V+LN L+ TQLQVS+GI M+A+ +PKI +LK+I+ ++ HRREVV +RT Sbjct: 334 KKDANAQVILNQLFKLTQLQVSYGITMLAILDNRPKIFSLKEILKSYAEHRREVVVKRTE 393 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F+L KA+ RAHILE L +AL NID +I +IR + EA+++L+A Sbjct: 394 FDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMAT-------------- 439 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + L+E QA AIL++RLQ+LT LE +K++DE +++ IA+ Sbjct: 440 --------------------FSLSELQADAILEMRLQRLTSLEVQKIIDELEQVRILIAD 479 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEI---TANSADINLEDLITQEDVVVTLS 544 L IL DR+ +I +EL V + FG+ R TEI + S+ N EDLI E+VVV LS Sbjct: 480 LEDILSKPDRVKSIICDELGKVSQSFGNTRTTEISLESLESSTFNAEDLIADEEVVVQLS 539 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 ++K P+ + Q+RGGKG K EDF+ +L A THD+++ FS++GR + +KV Sbjct: 540 EDMFIKRLPMDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHDNLMLFSNKGRAFLLKV 599 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y+LP AT+ ARG+ + ++ L DE IT++ F+E + M T G VKK L EF Sbjct: 600 YELPIATKEARGKSLKAVINLNDDEIITSLFTFRNFDESY-LLMVTREGFVKKIQLDEFT 658 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 + +G +AI L DGDELI V +V + S G +R + +R+ G +GV + Sbjct: 659 NTKKSGIIAIGLRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRSQGRTASGVTAM 718 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 +L + D + + + + ++NG+GKRT E+ TK R KG+ +K+ E+NG V Sbjct: 719 KLEDDDSIAGITKVEPNTNLFCISENGFGKRTDFEEFSTKGRGGKGMTYLKIGEKNGRAV 778 Query: 785 GAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 G V + D++++IT +G +R V IS+VGR+ GV ++ T +DE+ V Sbjct: 779 GISSVKEEDELLVITQSGMAIRVEVKTISMVGRSAMGVKVVNT-KDEDFV 827 >UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6BPL3_9RICK Length = 859 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/851 (43%), Positives = 559/851 (65%), Gaps = 37/851 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I +++ +E+ SSYL YAMSVIV RALPD+RDGLKPVHRR+LYAM G DW+K ++KSA Sbjct: 12 IKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQFRKSA 71 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDVIGKYHPHGD +VYD +VRM Q FS+ LV GQGNFGSIDGD AAAMRYTE RL Sbjct: 72 RIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTETRL 131 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +K++ L+ D+EK T+ F NYD TEK P V+P + PNLLVNG+ GIAVGMAT+IPPHNL Sbjct: 132 SKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIPPHNL 191 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+ING LA ID++DI I LM+++PGPDFPT +I G+ I+ Y GRG IR Sbjct: 192 GEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVIIGKDIIKHGYNNGRGSFKIRGEVS 251 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 VE K GRE +++ IPYQVNK+ L E+IA+LV+EK++EGI +RDES+++G+R+ I++ Sbjct: 252 VE-SLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVAIDL 310 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 + E + LY TQ++ SFG N +A+ G+PK LKD ++ F+ R ++V ++T Sbjct: 311 RNGVEPETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDFLSNFLSFREDIVIKKTK 370 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F+L+KA +RAHIL L+V++ N+D II++IR + TP +AK A++ W++ ++ Sbjct: 371 FDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQKLI--- 427 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 +E + G GLY L+E Q AIL+LRLQKLT L ++ E K+L + IA Sbjct: 428 -------SLVEGKKG--KGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIAR 478 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 +I+ S L++VI EEL+ ++E+F RRT+I + ++E+ I ++ V++T++ QG Sbjct: 479 YKKIISSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVIITVTLQG 538 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Y+K L + Q+RGGKGKS +++D + + L NTH +L FS+ G VY +K +++ Sbjct: 539 YIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKI 598 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTEFN 664 PE + ++G+ + N+LPL+ + I++I+P+ E E +K + ATA G V+K L +F+ Sbjct: 599 PEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFS 658 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 + +GK+A+KL + D+++GV + + +++L + GK +RF+ +R G ++ G++G Sbjct: 659 SINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKGRSSKGIKG 718 Query: 724 IRLGEGDKVVSLIVPRGDGA--------------------ILTATQNGYGKRTAVAEYPT 763 I L D++VSL V D +L+ ++NGYGK+T+ +Y Sbjct: 719 IELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFVLSISENGYGKKTSHIDYRV 778 Query: 764 KSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVI 823 +R KG+I I + RNG + + V + D+I++ T+ G ++R V EI GRNTQGV Sbjct: 779 TNRGGKGIIGIVNSPRNGNITSSFPVFEGDEILISTNKGRVIRVAVKEIRTAGRNTQGVR 838 Query: 824 LIRTAEDENVV 834 +I+ + +E VV Sbjct: 839 IIKLSGEEKVV 849 >UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH3_9BACT Length = 854 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/823 (48%), Positives = 542/823 (65%), Gaps = 35/823 (4%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D RE T V+I+EE++++YL+Y+MSVIVGRALPD RDGLKPV RRVL+AM+ +G A Sbjct: 8 DAPRETT-VSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTA 66 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Y+KSAR+VGDVIGKYHPHGD+AVYDT VR+ QPF+LRY L+DGQGNFGS+DGD+ AAMRY Sbjct: 67 YRKSARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRY 126 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TEIRL ++A E+MA+L++ETVD+ NYD + + P V+P +P LL+NGSSGIAVGMATNI Sbjct: 127 TEIRLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNI 186 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHN+TEV+N L +D+ + + LM + GPDFPT +I GR GIE AYRTGRG + + Sbjct: 187 PPHNITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVILGRSGIESAYRTGRGSIVM 246 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 R EVE ++ R+ +++ EIPY VNKARLIEKIAELV+EK++E I+ +RDESD+DGMR Sbjct: 247 RGVVEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMR 306 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IV+E+KR+A+ +++N L+ T LQ SFG N V++ +G+P+ ++L + F+ R++VV Sbjct: 307 IVVELKREAIPRIIMNQLFLLTPLQSSFGYNAVSIVNGRPETLSLSQTLRVFLGFRKDVV 366 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 TRRT+F LRKAR+R HILE L A+ ID II LIR + +P EA+ LV+ Sbjct: 367 TRRTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVST--------- 417 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + +E QAQAILDLRLQ+LTGLE EK+ EY+E+ Sbjct: 418 -------------------------FAFSELQAQAILDLRLQRLTGLEREKIEAEYREVA 452 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 IA L IL S + L+EVIR+E ++ E+FGD RRT I + ++ E LI E +VT Sbjct: 453 ALIASLEAILASREALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVT 512 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 LS++GY+K P + QRRGGKG+ +KE+D + L A HD +L F+ G+VY + Sbjct: 513 LSYEGYIKRMPDAVLPTQRRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRL 572 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 K Y+LPEA R ARG+ +++LL L DER+ AILPV FE + T G KKT L+E Sbjct: 573 KTYELPEAQRTARGKHLLSLLSLSPDERVAAILPVRSFEGDNLLLFGTVKGYFKKTRLSE 632 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 + +R G +A L +GD L V + + +++ + G +RF+ ++R G T GVR Sbjct: 633 YANIRQGGLIATVLEEGDRLARVLVLHPDRRLLVATRGGMSIRFEADNIRPTGRATRGVR 692 Query: 723 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 IRL D VVS +L T+ G+GKR + + R KGV KVT G Sbjct: 693 AIRLSPDDSVVSFEEVSDSDLLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTPETGA 752 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILI 825 VV ++V + D I ++TD G ++R EI VGR +GV L+ Sbjct: 753 VVAILKVTERDDIDVVTDTGRVIRIPSEEIRKVGRGAKGVKLV 795 >UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepID=C7H1V9_9FIRM Length = 854 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/859 (46%), Positives = 565/859 (65%), Gaps = 45/859 (5%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++++E+++++LDY+MSVIV RALPDVRDGLKPVHRR+LY M+ GND + AY+KSA VG Sbjct: 19 DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVG 78 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 131 V+G YHPHGD++VYD +VR+AQ FSLRY LVDGQGNFGS+DGD AA RYTE R++++A Sbjct: 79 AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 E++ D++K+T+D+ N+D T+K P V+P + PNLLVNGS GIAVGMATNIPPHNL+EVI Sbjct: 139 VEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 +GC+AYI+D DI + GLMEHI GPDFPTA II GR GI AY TGRGK+ +R RA +E + Sbjct: 199 DGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIE-E 257 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 K GR IIV EIPY VNKARLIE IA+LVKEKR+EGIS L DE+++ GMRIVI+V++DA Sbjct: 258 KKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRKDA 317 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 +VVLN LY TQLQ + G+ M+A+ H PK+M LK +I +V + EVV RRT ++L+ Sbjct: 318 NPQVVLNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLK 377 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTP-AEAKTALVANPWQLGNVAAMLERAGDD 430 KAR+RAHILE L A +D +I IR +EAK AA++E+ G D Sbjct: 378 KARERAHILEGLKKATDIVDELIATIRACKGGMSEAK-------------AAIMEQFGFD 424 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 + QA AI+ L+L +L GLE K+ +E L +I + Sbjct: 425 ---------------------DPQADAIVKLQLGRLAGLEILKIEEELGSLNAKIRDWEE 463 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 IL R++E+++ EL ++ +FGD RRTEI + ++++EDLI +E V TL+ GY+K Sbjct: 464 ILADDARVLEIVKSELLEMKRRFGDDRRTEIETVTGEVDIEDLIAEEQCVYTLTEAGYIK 523 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 Q + Y+AQ+RGG+G S KEED + + V +THD++L + +GR++ +K Y + E Sbjct: 524 RQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEG 583 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTE--FEEGVKVFMATANGTVKKTVLTEFNRLRT 668 +R ++G IVNLL L + E++T +L ++ EG V M T G +K+T L ++ +R Sbjct: 584 SRTSKGTNIVNLLQLAEGEKVTNMLCQSKDTANEGGFVTMVTKQGLIKRTPLEQYANIRK 643 Query: 669 AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE 728 +G + I L +GD L LTSG D +++ + G+ +RF E R MG + GVR I+L E Sbjct: 644 SGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMGRSGHGVRAIKLAE 703 Query: 729 GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQ 788 GD+VV + + R + ILT T+NG G+R+ + Y +R KG+ + ++ V AV+ Sbjct: 704 GDEVVGVCICRENATILTVTENGKGRRSDIDTYRITARGGKGIRNYDASKDK---VAAVK 760 Query: 789 VDDCDQIMMITDA-GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 + D ++++ G ++R +EI + R GV ++R E++ V+ L R DE Sbjct: 761 IVDDVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLARTDHD-DEAQ 819 Query: 848 LDTIDGSAAEGDDEIAPEV 866 +T++ A EGD+ A ++ Sbjct: 820 TETVE--AEEGDEPTAEQL 836 >UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYRA_CHLTR Length = 836 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/863 (45%), Positives = 549/863 (63%), Gaps = 44/863 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I P N+EEE+K SYL Y+MSVI+ RALPD RDGLKP RR+LYAM L ++K A Sbjct: 8 IVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHRKCA 67 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++ GD G YHPHG+S +Y T+VRMAQ +++RY LVDGQGNFGSIDGD AAAMRYTE RL Sbjct: 68 KICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTEARL 127 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A L+ DL+K+TVD V NYD T+ P V P+K PNLL NGSSGIAVGMATNIPPHNL Sbjct: 128 THSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 187 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+I L + + SIE ++E +PGPDFPT II G GI Y TGRGK+ +RAR Sbjct: 188 GELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLRARMH 247 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 VE ++ RE II+ E+PY VNK+RLIE+IAEL+ EK + GIS +RDESDKDG+R+V+E+ Sbjct: 248 VEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRVVLEL 307 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K+ EVV+N LY T +QV+FG NM+AL P+ MN+ +I+A++RHR +V+ RRT Sbjct: 308 KKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQRRTR 367 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 +EL KA RAHILE AL+ +D +++ IR + AK LV Sbjct: 368 YELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE--------------- 412 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 L+ +E QA AIL+LRL +LTGLE +K+ EY ELL++I Sbjct: 413 -------------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITY 453 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI-NLEDLITQEDVVVTLSHQ 546 ++L + + ++IREEL+ + + RRT I ++ D+ ++ED+I+ E V++T+S Sbjct: 454 YRKVLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGD 513 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 YVK P+ + Q+RGG+G + +K+ DF+ + A+T D++L F++ G+ Y +KV+ Sbjct: 514 DYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVW 573 Query: 606 QLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 +LPE R A+G+PI+N L + E++ A+L V FE+G +F+AT G VKK L F Sbjct: 574 RLPEGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFG 633 Query: 665 RLRTAGKVAIKLVDGDELIGV-DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 R G A+++ DGDELI + + E++VMLF+ G VRF VR MG GVRG Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRG 693 Query: 724 IRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 + L E D VVS V D ++L NG+GKR+ V ++ +R + GV SI + +RNG Sbjct: 694 VSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD 753 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 V+GA+ V DCD I++++ G +R + ++ ++GR TQGV L+ E + +V +++++ Sbjct: 754 VLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLS-- 811 Query: 843 VDEEDLDT---IDGSAAEGDDEI 862 ++ E ++T + S G D I Sbjct: 812 INTESVETEENLAASVQSGQDTI 834 >UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms RepID=GYRA_SYNY3 Length = 860 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/860 (44%), Positives = 543/860 (63%), Gaps = 72/860 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D + ++ E+ SYL+YAMSVIVGRALPD RDGLKPVHRR+LYAM LG + Sbjct: 1 MTDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPD 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + ++K ARVVG+V+GKYHPHGD+AVYD +VRMAQ FS+R L+DG GNFGS+D D AAM Sbjct: 61 RPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAM 120 Query: 121 RYTEIRLAKIA-HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 RYTE RL ++ + L+ D+E ETVDF+DN+DG+++ P V+P +IP LL+NGSSGIAVGMA Sbjct: 121 RYTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMA 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNL EVI+G +A I + +I+ + LM+ IPGPDFPT A I GR GI EAY TGRG Sbjct: 181 TNIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGS 240 Query: 240 VYIRARAEVEVDAKTGR---ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 + +R A +E GR + IIV E+PYQ NKA LIE+IA+LV +K+++GI+ +RDES Sbjct: 241 ITMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDES 300 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 D+DGMRIVIE+KRDA VVLNNLY QT +Q +FG N++AL +G P+++ +K + F Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWE 360 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R E +TRRT +ELRKA +R H+L+ L +AL N+D +I LIR A A AKT LV Sbjct: 361 FRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEG--- 417 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 + L+E QA AIL ++L++LT LE +K+ Sbjct: 418 -------------------------------FSLSEVQADAILQMQLRRLTALEADKITA 446 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 E+ EL +IA+ IL +R+ +I EELE ++ RRT I ++ DLI Sbjct: 447 EHDELQTKIADFQDILARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIAN 506 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + ++ L+ QGY+K P S + Q R +GK+AA+IK++D ++ L HD +L FS R Sbjct: 507 DQALILLTEQGYIKRMPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDR 566 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G VYS+ YQ+P A+R ARG PIV +LP+ +DE+IT+++ V+EF++ M T G +K Sbjct: 567 GVVYSLNAYQIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIK 626 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK--ESSVRAM 714 KT L+ F+ +R G +AI LV+GD+L V L ED V++ S +G + FK + +RA+ Sbjct: 627 KTALSAFSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRAL 686 Query: 715 GCNTTGVRGIRLGEGDKVVSL-IVPR-------------------GDG------------ 742 G T GV+ +RL GD ++S+ I+P GD Sbjct: 687 GRATRGVKSMRLRSGDALISMDILPSQVVANIAVGSEDEPDEDLGGDTDAILEESDNPGP 746 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802 +L T G+GKR + ++ + RA GV +I+ ++ +V V+ D++M++T+ G Sbjct: 747 WLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDDQLVALHVVNADDELMIVTNRG 806 Query: 803 TLVRTRVSEISIVGRNTQGV 822 ++R V++IS R+ GV Sbjct: 807 IIIRQSVNDISPQSRSATGV 826 >UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA_TREPA Length = 813 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/836 (45%), Positives = 536/836 (64%), Gaps = 37/836 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P++IE E+K +Y+DY+MSVIV RALPDVRDGLKPVHRR+LYAM G ++ +K A Sbjct: 12 LVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCA 71 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VGDV+G +HPHGD++VYD +VR+ Q FSLRY ++ QGNFG+I GD AA RYTE ++ Sbjct: 72 KIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A+IA ++ D++KETV FV N+D ++ P V+P + P LL NGSSGIAVGM TN+PPHNL Sbjct: 132 ARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNL 191 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+ AYI++ ++SI+ L + I GPDFPT II G+ GI ++Y TGRGK+ +RAR Sbjct: 192 REIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQSYETGRGKIVVRARFT 251 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 +E D+K GR+TII E+PYQVN L+ +I EL + K +EGI+ + DE SD+ G+RIV+E Sbjct: 252 IETDSK-GRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVE 310 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K+ +VVLN+L+++T LQ SF + +AL G+P+++ LKD++ FV HR +VVTRR Sbjct: 311 LKKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVRYFVEHRVDVVTRRA 370 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FELRKA++R H++ AL AL ID II LIRH+ AK L + NV Sbjct: 371 HFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRL-REQFDFDNV------ 423 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 QAQAI+D+++++LTGLE E L E K+L + I+ Sbjct: 424 ---------------------------QAQAIVDMQMKRLTGLEVESLRTELKDLTELIS 456 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTLSH 545 L +L S +++ V+++E + + FGD RRT+I +N + +++ED I +E++V+ +SH Sbjct: 457 SLEELLTSPQKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISH 516 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K P+S Y Q RGGKG S+A + DFI ++ A+THD+++ +SRGR Y +KVY Sbjct: 517 LGYIKRVPVSAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVY 576 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 +PE+ R RG I +LL + DE ITAI+ + EF VFMATA G VKK F Sbjct: 577 GIPESGRANRGSHIKSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVN 636 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +T G +A+KL GD L+ L EDEVML + +GK +R VR MG N++GV GI+ Sbjct: 637 AKTRGIIALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIK 696 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L D V ++ +L T+NGYGKR + +E+ R T G T+R G ++G Sbjct: 697 LTSEDLVAGVLRVSEQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIG 756 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 A+ V D D+ M IT G +R V IS++GR QGV ++ + VVGL V + Sbjct: 757 ALAVLDTDECMCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGLSCVMQ 812 >UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH72_9BACT Length = 859 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/837 (46%), Positives = 534/837 (63%), Gaps = 40/837 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 +TP IE+ L +YL Y+MSV VGRA+PDVRDGLKP RRVL+AM+ L +Y K A Sbjct: 11 VTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNLRKGSSYMKCA 70 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDVIGKYHPHGD +VYDT+VRMAQ FS+R ML+DGQGNFGSIDGDSAAA RYTE R+ Sbjct: 71 RVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDGDSAAAYRYTECRM 130 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++A EL+ DL+K TVD +DG++ P V+P + PNLLVNG++GI VGMAT+IPPHNL Sbjct: 131 ERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVGMATSIPPHNL 190 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EVIN +A +D I+IE +M+H+PGPDFPTA I G GI Y TGRG V++R RA Sbjct: 191 GEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISIGFDGIRRLYETGRGGVHLRGRA- 249 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 E+ K GRE I++ EIPY VNK +++KIAELV K + GIS+L DE S + G+R+V+ Sbjct: 250 -EIIEKNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESSSRVGIRVVVG 308 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K +A+ VV+N LY TQL VS G + + + QPK +NLK ++ A++ HR EV+TRR Sbjct: 309 IKTNAMATVVINQLYKHTQLAVSIGCQFLVVDNKQPKTLNLKQLLQAYLDHRLEVITRRI 368 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL KA RAHILE L A+ +ID +I++IR + +A L ER Sbjct: 369 KFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLK-------------ER 415 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + L+ +QA+AILD+RL +LTGL ++L EY+EL+ +IA Sbjct: 416 ---------------------FELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRIA 454 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 +L + ++V++EEL VR++F D+RRTE+ DIN EDLI + +T+S++ Sbjct: 455 HYRELLANRQMRLDVVKEELIEVRDKFADERRTEMRPGERDINYEDLIARASATITISNE 514 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K P Y Q RGGKG K++DF+ +L A THD+I+ F++ GR++ +KVY Sbjct: 515 GYIKRVPTEIYRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVYD 574 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEF-EEGVKVFMATANGTVKKTVLTEFNR 665 +PEATR ++G+ +VNLL E+ E + A++ V + +E + M+T NG VKKT L F Sbjct: 575 IPEATRVSKGKAMVNLLEFEKGEYVRAMISVDKVDDEDRFIMMSTRNGVVKKTALAAFKN 634 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +R AI L + D+LI LT G +++L + EG FKES R G T G RGIR Sbjct: 635 MRKKPIKAIVLDEDDDLIEAKLTDGNKKIILSTREGIACHFKESDCRTQGRVTRGCRGIR 694 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L E D+VV++ + IL T G GKR+ V +Y R KGV +IK+ E + VV Sbjct: 695 LSESDQVVAMSIVEESEDILVVTAKGMGKRSCVDDYRLTKRGAKGVRNIKLKEGD-YVVE 753 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN-VVGLQRVAE 841 + ++D D+I+M T G +VR I +GR +QGV +++ + + ++ RV E Sbjct: 754 VMMIEDTDEIIMTTMEGLMVRISAEPIRSLGRASQGVTIMKFKKASDLIISASRVVE 810 >UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon RepID=D1JED8_9ARCH Length = 843 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/856 (45%), Positives = 556/856 (64%), Gaps = 64/856 (7%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + V++E+E+ SY+DYAMSVIVGRALPD RDGLKPVHRR+LY M+ LG N+ +KKSA Sbjct: 14 VIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPHKKSA 73 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+GKYHPHGD AVYDT+VRMAQ FS RY LVDGQGNFGS+DGD+AAAMRYTE RL Sbjct: 74 RIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDGDAAAAMRYTEARL 133 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +KIA EL+ DLEK+TV++ N+D + K P ++P K+PNLL+NGSSGIAVGMATN+PPHNL Sbjct: 134 SKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMPPHNL 193 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 TEV++G + I++ ++SIE LM+ I PDFPT II G GI+ AY TGRG + IRA+AE Sbjct: 194 TEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIGYEGIKRAYETGRGSIRIRAKAE 253 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +EV K +E I+++EIPYQVNK+RL+E+IAE K+ +VE IS LRDESD+ GMRIVIE+ Sbjct: 254 IEVKGK--KERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKGMRIVIEL 311 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K A ++LN LY TQL+ +FG+ +AL G+P+++ LK++I +++HR+EV RR Sbjct: 312 KAGANSAIILNRLYKHTQLENTFGVINLALIDGEPRVLTLKELIECYIKHRKEVTIRRLQ 371 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 +EL +A R HIL+ L +A++NID +I LI+ A AK+AL+A Sbjct: 372 YELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR-------------- 417 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + L+E+QA+ ILD+RL +L+ LE +K+ E EL +I Sbjct: 418 --------------------FELSEEQAKEILDMRLSRLSALERDKIETERAELETKINW 457 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L +LGS R+ E+++E+L ++++GD RRT I ++ D + +++V++ L+ + Sbjct: 458 LKEVLGSEARIYELLKEDLIEQKDKYGDARRTNI-EEMVTLSERDFVEEKEVILYLTQRD 516 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 YVK P ++ Q RGGKG + KE+D I + A+T + ++ F+ G+ Y +K Y++ Sbjct: 517 YVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQVKTYEI 576 Query: 608 PEATRGARGRPIVNL--LPLEQDER---ITAILPVTEFEEGVK-------VFMATANGTV 655 P ++R ++G+P+VN+ L + +ER +TA+ E ++G++ + AT G V Sbjct: 577 PPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATKRGVV 636 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGV----------DLTSGEDEVMLFSAEGKVVR 705 K++ L + +R+ G VA++ GD L V D +G++ ++L S GK + Sbjct: 637 KRSSLAKLKAIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSKNGKAIF 696 Query: 706 FKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-----VPRGDGAILTATQNGYGKRTAVAE 760 F E +R MG GVRG+RL + D++ S+ V + +T T+ GYGKRT + Sbjct: 697 FHEEELREMGRYAAGVRGMRLEKDDEIASVEALDVGVSKEKSRAVTITEKGYGKRTKLDA 756 Query: 761 YPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQ 820 Y R KGVISIK ERNG VV QV + D++M+ T G + + V IS+ GRNTQ Sbjct: 757 YRETHRGGKGVISIKTGERNGKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRNTQ 816 Query: 821 GVILIRTAEDENVVGL 836 GV ++ + E VV + Sbjct: 817 GVRIMNVKKGERVVAV 832 >UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=GYRA_FIBSS Length = 903 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/873 (45%), Positives = 546/873 (62%), Gaps = 88/873 (10%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E++++ YL Y+MSVIV RALPD RDG KPVHRRV+Y+M+ LG NK KSAR+VGD Sbjct: 15 VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 VIGKYHPHGD AVYDT+ RMAQ FSLRY LV GQGNFGSIDGDS AAMRYTE ++ + Sbjct: 75 VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 134 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 ++ DLEKETVD NYD + + P V+P+ +PN++VNG+SGIAVGMATN+ PHNL EV Sbjct: 135 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 194 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 A ++ D++ E LME++ GPDFPT AI+ GR GI EAY TG G+V +RAR E+E DA Sbjct: 195 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 254 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 K G+ IIV EIPY VNKA L +KIA+LV++KR++GI+ +RDES +D +RIVIE++RDAV Sbjct: 255 K-GKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD-IRIVIELRRDAV 312 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 GEVVLNNL+ TQLQ +F I +AL + PK++ LKD++ ++ HR +V+TR T F+L+K Sbjct: 313 GEVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKK 372 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 A R HI+E L +A NID ++++IR + T AK +L Sbjct: 373 AAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSL---------------------- 410 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 + L E Q+QAI+D+RL +L GL EKL EY EL+ +A+L IL Sbjct: 411 ------------QDRFSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDIL 458 Query: 493 GSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQ 552 +R + ++ ++L+ V +++GD+RRT I D + EDLI +E+ V+TLS +GY++ Sbjct: 459 EKRERRVAIMLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRL 518 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 P+ ++AQ RGGKG A +K+ED ++++ A+TH ++L F+++GRVY KVY+LPE R Sbjct: 519 PIDTFKAQNRGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGAR 578 Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 +GRPIVN + L + E++ AI+PV +F + AT G + K LT F+R R AG Sbjct: 579 NGKGRPIVNFVALTEGEKVQAIVPVRKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVN 638 Query: 673 AIKLVDGDELIGVDLT----------------------------------------SGE- 691 AI L + DEL+ V L SG+ Sbjct: 639 AISLDEDDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDA 698 Query: 692 ----------DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 D +M+ + G+ V F S RAMG T GV+GI L EGD+V+SL+ + Sbjct: 699 EDFANRPIPKDLLMIATKNGQAVTFPISCFRAMGRGTHGVKGITLAEGDEVISLLWLKAG 758 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 ILT T+ GYGKR+ Y R +KGV ++ VT++ G V V D +++ + Sbjct: 759 NKILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKD 818 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 G ++R + ++I + GRN QGV I T D +VV Sbjct: 819 GQVIRIKAADIRLTGRNAQGVKAI-TLRDGDVV 850 >UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8A6_THEAS Length = 816 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/832 (45%), Positives = 534/832 (64%), Gaps = 37/832 (4%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 SDL +++ P+ +EEE+K SY+DYAMSVIVGRALPD RDGLKPV RR+LYAM LG ++ Sbjct: 8 SDLFQKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQ 67 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSARVVG+ +GKYHPHGD+A+Y+T+VRM+Q FS+RY LVDGQGNFGSIDGD AAMR Sbjct: 68 PFKKSARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPAAMR 127 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL + E++AD++++TVD++ N+D + + P V+P++IPNLLVNGS+GIAVGMATN Sbjct: 128 YTEARLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATN 187 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 +PPHNL EV++ C +D+ D+ + LM H+PGPDFPT +I GR GI +AY TGRGK+ Sbjct: 188 MPPHNLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIMGRDGIIDAYTTGRGKIV 247 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 +R AE+E DAK G++ I++ +IPY VNK+ LIE I + V+ +++GI+ +RDES+++G+ Sbjct: 248 VRGCAEIE-DAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGI 306 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 R+V+E+ RD+ +VL LYS+TQLQ +FG+ +AL G+P +NLK ++ F+ HRR V Sbjct: 307 RLVLELHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVELNLKGLLQIFIDHRRMV 366 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 V RRT + LRKA +RAHILE L AL ID +I LIR + P AK LV +LG Sbjct: 367 VRRRTQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVE---ELG--- 420 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 TE QAQAILD+RLQ+LT LE KL +E EL Sbjct: 421 ----------------------------FTEAQAQAILDMRLQRLTSLEKHKLQEELAEL 452 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 + QIA ILG L V+REEL V+ +GD+RRT I + D++ EDLI + +VVV Sbjct: 453 MAQIARYRLILGDPAELDSVVREELLEVKRAYGDERRTVIEDSVDDVSYEDLIPETEVVV 512 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 ++ G+++ PL +Y Q RGGKG A +K ED + + V TH + F+ RGRV+S Sbjct: 513 AMTRDGFIRRMPLQDYRCQARGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFS 572 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 +K +PE G RG+ + + L++ E + + E VF+ T G K+ + Sbjct: 573 LKCLAIPEPKSG-RGKHVSTFISLDEGESVVTFRD-SALEGARFVFLVTKMGLAKRLPVG 630 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 E + AG+ + L + D + V T GED+++L +A+G+ +R E+ R G GV Sbjct: 631 ELEGITRAGRRILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRPQGRAAKGV 690 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 RGI+L D VV V +L +Q G GKRT E+ R GV ++++ ER G Sbjct: 691 RGIKLDPDDLVVGCDVIMPGRQVLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGERTG 750 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 +VGA V D D+IM+IT G +VR ++S + R+ G+ L+R E + V Sbjct: 751 HLVGAWGVADDDEIMVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQV 802 >UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytoplasma RepID=Q2NJM2_AYWBP Length = 835 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/854 (43%), Positives = 556/854 (65%), Gaps = 46/854 (5%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I VN+ EE+K S+L YAMSVIV RALPD++DGLKPV RR+LY+M LG + +YKK+ Sbjct: 21 KIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKA 80 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDG GNFGSIDGD AAAMRYTE++ Sbjct: 81 ARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVK 140 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 +AK+A EL+ +++KET+DFVDNYDGTEK P V+PT +PNLL+NG++GIAVGMAT IP HN Sbjct: 141 MAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHN 200 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+G + YI+++DISI+ LM+HI GPDFPT + G + ++ AY TG+G V ++A++ Sbjct: 201 LGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGLQSLKSAYHTGQGAVILKAKS 260 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 V + G+ +IIV EIPYQV K LIEKIA LVK K VEGI+ LRDES + GM+IVIE Sbjct: 261 HVL--EERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKGMKIVIE 318 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KRDA +++LN LY +QL++SFGINMVAL P++++LK I+ AF R EV+ R+ Sbjct: 319 LKRDANAKIILNKLYKHSQLRISFGINMVALVGKTPQLVSLKQILEAFFNFRIEVINRQK 378 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL+KA R H++ AL L +I+ I+LI+ + EA+ L+ Sbjct: 379 SFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQK------------- 425 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Y E Q++AIL++ LQ+L+ E +KL+ E K L +I Sbjct: 426 ---------------------YNFDEIQSKAILEMSLQRLSNQETQKLITEEKNLTQEIL 464 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDVVVTLS 544 E I+ S + ++ +EL +++++ D R+T + + A +N EDLI ++ +++T++ Sbjct: 465 ECKSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFD-APLNFEDEDLIEKKPIIITIT 523 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 ++GY+K + Y+ Q+RGG+G S +I EEDFI+ L + +THD+ L F+++G+VY +K Sbjct: 524 NKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKG 583 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK-VFMATANGTVKKTVLTEF 663 Y++P R ++G +VN LP E+DE +T+ + F++ +F AT G VKKT L E+ Sbjct: 584 YEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQDYLFFATKKGIVKKTPLKEY 643 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + + G +AI+L + DE++ V T+G ++L S G + F E+ ++++ N+ GV G Sbjct: 644 SHISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKIKSISRNSMGVIG 703 Query: 724 IRLGEGDKVVS---LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 +RLG + +V V + IL T+NG+GK T V +Y ++R+ KG +IKV ++ Sbjct: 704 MRLGSDEFLVGAALFDVDSKEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVNDQK 763 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV-GRNTQGVILIRTAEDENVVGLQRV 839 G ++ V D +++ +D G +VR + +I+ + TQG +I+ V + V Sbjct: 764 GRLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAVSVAVV 823 Query: 840 AEPVDEEDLDTIDG 853 + V D+D ++ Sbjct: 824 KKEV--LDIDVVEN 835 >UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7T7_9BACT Length = 885 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/912 (42%), Positives = 557/912 (61%), Gaps = 76/912 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDL VNIE+ + ++YL Y++SV VGRA+PDVRDGLKPV+RR+LYAM LG + Sbjct: 1 MSDLGTRDFQVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKS 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 A K ARVVG+V+GKYHPHGD+A+YD +VR+AQ FS+R L++GQGNFG+IDGD AAA Sbjct: 61 HATVKCARVVGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAAS 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+ ++A EL+AD+EK+TV+ + N+D +E P+V+P + P LLVNG++GI VGMAT Sbjct: 121 RYTECRMERLAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +IPPHNL EVI+ + +D+ +++ LME++PGPDFPT AII GR + + Y+TG G + Sbjct: 181 SIPPHNLGEVIDATICLLDNPKATVDELMEYLPGPDFPTGAIIRGRYSMRQFYQTGHGSI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-D 299 IRA+A ++ K GRE IIV EIPY + K +L++KIAELV +KR+ GIS LRDES K Sbjct: 241 KIRAKA--DIIEKDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRT 298 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMRIVIE+KR A+G VVLN L++ T L+ + G M+ + H +P+ MNL ++ A++ HR Sbjct: 299 GMRIVIEIKRGAMGSVVLNQLFAHTMLETTIGCTMLVVDHNRPRTMNLVQVLQAYIDHRL 358 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EV+ RRT+FEL+KA+ RAHILE L ALANI+ ++++IR + + +A L+A Sbjct: 359 EVIVRRTLFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIAR------ 412 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + T+ Q AILD+RL +LTGL E L EY+ Sbjct: 413 ----------------------------FEFTQIQVDAILDMRLHQLTGLAIETLTAEYE 444 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 EL +I L + S + + VI++EL+ +RE++ D RRTEIT + D+N+ DLI + Sbjct: 445 ELKKRIEYLTALAASREMQLGVIKDELKEIREKYADPRRTEITIDDTDLNIADLIPRHSC 504 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V+T+S+ GY+K P Y Q RGGKG KEED ++ L A++HD I F+ RG + Sbjct: 505 VITVSNTGYIKRVPADTYRTQHRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFM 564 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV--TEFEEGVK-VFMATANGTVK 656 Y + VY++PE +R +GR I N++ +E E+I A+L V EF++ K + MA+ G +K Sbjct: 565 YWLNVYEIPEGSRTGKGRAITNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIK 624 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE--SSVRAM 714 K+ L F LR G A+ + + D+LIG ++ +E++L + G F + +R M Sbjct: 625 KSELALFKNLRRVGLRALVIEEDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPM 684 Query: 715 GCNTTGVRGIRLG-EGDKVVSLIVPR-----------------------------GDGA- 743 G GV G+R EGD VVSL + R G G Sbjct: 685 GRTARGVTGMRFKIEGDSVVSLEIIREHLYEEPAEDEEGEEVEVEVDVDEEMPVVGSGPE 744 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 803 +L T G GKR+ V+ Y R KGV++IK+ E V+ VQ+ + D+I++ T+ G Sbjct: 745 VLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLRE-GETVLSVVQITEEDEILLTTERGQ 803 Query: 804 LVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIA 863 LVR EI VGR + GV ++ + + G+ ++ E VD + AE E Sbjct: 804 LVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVE-VDVPKSPATEEGGAE-SSETP 861 Query: 864 PEVDVDDEPEEE 875 EV V + P E Sbjct: 862 AEVPVAEIPATE 873 >UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GYRA_MYCPN Length = 839 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/854 (44%), Positives = 535/854 (62%), Gaps = 43/854 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I +++ EL+ S+++YAMSVIV RALPD RDGLKPVHRRVLY G ++ +KKSA Sbjct: 20 IKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRPFKKSA 79 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+ K+HPHGD A+YDT+ RMAQ FSLRY+L+DG GNFGSIDGD AA RYTE RL Sbjct: 80 RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARL 139 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +K+A EL+ D++K+TVDFV NYDG E+ P V+P PNLL NGSSGIAVGM+T+IP HNL Sbjct: 140 SKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNL 199 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 +E+I G + ID+ D +I L+ I GPDFPT A I +GIE + TG+G V IR++ Sbjct: 200 SELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSK-- 257 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 V ++ R ++V EIPY VNK LIEKI ELVK + + GI+ +RDES ++G+R+VIEV Sbjct: 258 VSIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIRLVIEV 317 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KRD V EV+LN L+ T+LQV F +NM+AL G PK++N+K + ++ H+ +V+ R+T Sbjct: 318 KRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVLIRKTQ 377 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F L+K ++R HIL L +A NID +I +I+ + AN N AM Sbjct: 378 FNLKKYQERFHILSGLLIAALNIDEVIAIIKKS-----------AN-----NQVAM---- 417 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 E L FG L E QA+A+LD+RL+ L+ LE KL E +EL I Sbjct: 418 -------EALHERFG-------LDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEF 463 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITAN-SADINLEDLITQEDVVVTLSHQ 546 ++L +++I+E+L + EQFGD RR+EI S DI+ EDLITQE+VV+T+S Sbjct: 464 CQQVLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTN 523 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K + Y Q RGG G +D I +LLV +TH +L F+ +G+VY ++ +Q Sbjct: 524 GYLKRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQ 583 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P R +G P VNL+ +++DE+I A++ V +++ G F T NGT+K+T L+EF + Sbjct: 584 IPPGFRTNKGIPAVNLIKIDKDEKICALISVNDYQNGY-FFFCTKNGTIKRTSLSEFANI 642 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 + GK AI + D L V TSG+D++ + S G VVRF E +VR + GV GI L Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINL 702 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 + + V L +L+ QNG GK T++ +Y R KGV +++VT + G VV Sbjct: 703 NQCEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTGPVVTT 762 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 V + ++MI+ AG +VR + ++S +NT GV LI+ E E L+ V EE Sbjct: 763 TTVFGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKER---LETVTIFKKEE 819 Query: 847 DLDTIDGSAAEGDD 860 + T +A E DD Sbjct: 820 AIKTT--TATETDD 831 >UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepID=GYRA_THEMA Length = 804 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/823 (44%), Positives = 536/823 (65%), Gaps = 43/823 (5%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E+EL SYL Y+MSVIVGRA+PDVRDGLKPV RR+LY M LG N KKSAR+VG+ Sbjct: 10 VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 V+GKYHPHGD+ VYD +VRMAQPF++RY L++GQGNFGSID D AAMRYTE RL ++A Sbjct: 70 VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAE 129 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 E++ D+EK TV+ +DN+DGT K P+V+P+K+PNL++NG+SGIAVGMATNIPPHNL+E ++ Sbjct: 130 EMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 + ID + ++E LM+ I GPDFPT A++ +++ Y GRG++ +R + VE Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVEDGK 249 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 + R I++ EIPY V+KA LIE+IA++ K+ I +RDESDK GMRIVIE+ +DA Sbjct: 250 RVKR--IVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDAN 307 Query: 313 GEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 EV++NNLY +T LQ F + M+ + H +P++MNLK ++ AF+ HR EV+ RR +E Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 + RAH++E L A I +++++R++ A+ +L+ Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLM-------------------- 407 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 E LE +TE+QA+AILD+RL +LT LE E L +EY +L+ +I+E+ I Sbjct: 408 ---ETLE-----------ITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEI 453 Query: 492 LGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKY 551 L +++ E++++E +++Q+GD RRTE+T S + N E+LI +EDVV+TLSH+GY+K Sbjct: 454 LEKDEKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKS 513 Query: 552 QPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEAT 611 PL+ Y +Q+RGGKG + +++ E+D ++ ++VA L ++ GR Y +K YQL Sbjct: 514 TPLNSYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTG 573 Query: 612 RGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF-NRLRTAG 670 R RGR I L LE E+I A+ + EG + +AT +G +K+T L EF N G Sbjct: 574 RNTRGRHITAFLNLEDTEKIVALASLN--GEGRDLVIATKSGKIKRTALKEFENATSNRG 631 Query: 671 KVAIKLVDGDELIGVDLTSGEDEVMLFSAE-GKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 AIK+ GDE++ + + E E ++ + + G +RF S VR MG N GV+ I+L G Sbjct: 632 VRAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPG 691 Query: 730 DKVVSL-IVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787 D+VVS+ ++P G +G ILT T+ G+GKRT V Y + R G+ +I + G VV Sbjct: 692 DEVVSVDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVR 751 Query: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 V ++I+++T G ++R VSEI ++GR T+GV LI +D Sbjct: 752 YVRGDEEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 8/212 (3%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 V + G +K T L + + GK KL + DE+ V + + + G+ Sbjct: 502 VITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRA 561 Query: 704 VRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVA 759 K + G NT G + L + +K+V+L G+G ++ AT++G KRTA+ Sbjct: 562 YVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNGEGRDLVIATKSGKIKRTALK 621 Query: 760 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 819 E+ + + +GV +IK+ + +V V + + +++ T G +R VS++ +GRN Sbjct: 622 EFENAT-SNRGVRAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNA 680 Query: 820 QGVILIRTAEDENVVGLQRVAEPVDEEDLDTI 851 GV I+ + VV + V P +E ++ T+ Sbjct: 681 AGVQAIKLQPGDEVVSVD-VIPPGEEGEILTV 711 >UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C0R046_BRAHW Length = 834 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/848 (43%), Positives = 537/848 (63%), Gaps = 40/848 (4%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D+ + + ++IE EL+ SYL YAMSVIV RALPDVRDGLKPVHRR+LYAM +K Sbjct: 22 DILKRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKP 81 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 YKKSA VG+V+ +YHPHGD+AVY T+VRMAQ FS+RY+LVDGQGNFGSID D AAMRY Sbjct: 82 YKKSAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRY 141 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R+ + A E++ D+EKETV FV N+D + P V+P +P LLVNGS GIA+GMATN+ Sbjct: 142 TEARMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNM 201 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL EV+N + YID +D I+ LM ++ GPDFPTA II G+ GI+EAY TG+G++ + Sbjct: 202 PPHNLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIYGKEGIKEAYTTGKGRIKL 261 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-DKDGM 301 RAR EVE + K RE I+V E+PY V K L EKIA+LVK+ ++EG++ +RDES ++ G+ Sbjct: 262 RARLEVE-ETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGI 320 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 R++IE+K+ ++VLN L+ T L+ +FGI +AL +G+PK++NLK++I FV HR EV Sbjct: 321 RLIIELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEV 380 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 +T+RT ++L +A+ +AHILE L +A ANI+ +I +IR + A+T L+ Sbjct: 381 ITKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR-------- 432 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + L+E+QAQAILD+ L++LT LE K+ E ++L Sbjct: 433 --------------------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQL 466 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLITQEDV 539 + IA +L ++++ VI++EL+ + E++GD RR+EI N +I+ EDLI EDV Sbjct: 467 REFIAYCEDLLAHPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDV 526 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V+++ QG++K P S Y Q RGG G + + E +I+ L VA+T D++ F+ RG+ Sbjct: 527 AVSITTQGFIKRVPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKA 586 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 + MKV+++P ++ ++G+ I +L L +E+IT+ V+EF+ + M T GT+KK Sbjct: 587 FWMKVHEIPALSKISQGKSIKFILNLAPEEKITSYFTVSEFDPKQSIIMVTKMGTIKKME 646 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L + G +A+ L + DEL+ V D+ ++ +A G +R E +R MG Sbjct: 647 LKHLENAKKRGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKMGRAAA 706 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 GV+GI L + D VS +++ T+NG GKR + ++ K R KG I IK + Sbjct: 707 GVKGISLDDDDICVSGNAIHKGESLIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNK 766 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 G VV V D D+IM++T ++ + I +GRN +GV ++ ++ V L V Sbjct: 767 TGNVVSVKTVGDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVV 826 Query: 840 AEPVDEED 847 P D E+ Sbjct: 827 --PADNEE 832 >UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia RepID=B2URM6_AKKM8 Length = 873 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/888 (43%), Positives = 553/888 (62%), Gaps = 40/888 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I PV++ EL +S+LDY+MSVI+ RALPDVRDGLKP RR+LYAM L +K + Sbjct: 6 IKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKTRKCS 65 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VGD +G YHPHGD+A+Y T+V MAQ +S+R +LV GQGNFG+ DGD AA RYTE +L Sbjct: 66 KIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYTEAKL 125 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 + + LMADL+K+TVDFV YD P V P+ PNLLVNG +GIAVGMATN+PPHNL Sbjct: 126 SGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMPPHNL 185 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EV++G A ID+ +++E L ++I GPDFPT + G GI+ +RTGRG V IR + + Sbjct: 186 GEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGFSGIDNYFRTGRGSVRIRGKID 245 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +EV +G++ +I+ E+PY VN+A L E+IAEL K+K + IS +RD SD+ I IE+ Sbjct: 246 MEV-TDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTC-IEIEL 303 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KRDA +VV+N LY T ++ SF +NM+A+H +PK + + D I ++ HRREVV RRT Sbjct: 304 KRDARPQVVMNQLYKLTSMETSFAVNMLAIHDNRPKTLAMMDAINFYIEHRREVVVRRTR 363 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW--QLGNVAAMLE 425 + L A A LEA +AL ++D I +IR + EA+ L + Q +L Sbjct: 364 YLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLGILI 423 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 R+ + ++ Y TE+Q +ILDLRL +LT LE++K+ EY ELL +I Sbjct: 424 RS------------QASIQGDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRI 471 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 + L IL + R++ ++++EL+ +++++ R T I S D+ +EDLI + ++VT++H Sbjct: 472 KDYLDILANESRVLGIVKDELKAIKDKYATPRVTRIIPFSGDMAIEDLIPNDTMIVTITH 531 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIK------EEDFIDRLLVANTHDHILCFSSRGRV 599 GY+K +EY Q RGGKG AA + E DFI+ L A HD+++ F++ GRV Sbjct: 532 SGYIKRTNSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRV 591 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE----------FEEGV-KVFM 648 Y +VY++ EA R A+GR I NLL L+ +E I AIL + F EG V Sbjct: 592 YVDRVYEIDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVF 651 Query: 649 ATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE 708 AT +GTVKKT L +F R AG +AI L +G+ L+ +LTSG DE++L + +G +RF E Sbjct: 652 ATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFPE 711 Query: 709 SSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 768 +R G NT GVRGIR GD VV+L + +L A++NG GKRT+ EY T+ R Sbjct: 712 EDLRTQGRNTIGVRGIRPRAGDYVVALAIVDPQKTLLVASENGLGKRTSFDEYRTQGRGG 771 Query: 769 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTA 828 G+ ++ T++ G VV A V D D++M++T AG VR +V+ + GR TQGV L+ Sbjct: 772 TGIKTMNCTDKTGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTLN 831 Query: 829 EDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDE-PEEE 875 E E++ + V P DE+ + + AE +D A EV + E P EE Sbjct: 832 EGESIQDISIVI-PDDED-----EEAPAETEDAGAGEVSGEMEAPAEE 873 >UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondrial n=14 Tax=cellular organisms RepID=GYRA_NICBE Length = 935 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/845 (44%), Positives = 530/845 (62%), Gaps = 65/845 (7%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + +E +Y+ YAMSV++GRALPDVRDGLKPVHRR+LYAM+ LG K YKK ARVVG+ Sbjct: 95 LHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYKKCARVVGE 154 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 V+GK+HPHGD+AVYD++VRMAQ FSLR L+ G GNFGSID D AAMRYTE RL + Sbjct: 155 VLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPPAAMRYTECRLEALTE 214 Query: 133 E-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 L+ADLE+ TVDFV N+D ++K P ++P ++PNLL+NG+SGIAVGMATNIPPHNL E++ Sbjct: 215 SMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATNIPPHNLGELV 274 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV- 250 + A I + + +++ L+E++PGPDFPT II G GI EA+RTGRG+V IR + ++E+ Sbjct: 275 DALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAFRTGRGRVVIRGKTDIELL 334 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 D+KT R II+ EIPYQ NKA L+EKIA+LV+ K +EG+S +RDESD+ GMRIVIE+KR Sbjct: 335 DSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSGMRIVIELKRG 394 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 + +VLNNLY T LQ SF NMV + +GQPK+M LK+++ AF+ R VV RR F+L Sbjct: 395 SDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQAFLDFRCSVVERRARFKL 454 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 +A++R HI+E + V L N+D +I IR A + A A + Sbjct: 455 SQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAAS--------------------- 493 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 R E + L+E+QA+AILD+ L++LT LE K ++E K L QI++L Sbjct: 494 -LRKE------------FELSEKQAEAILDISLRRLTALERNKFVEEGKSLRTQISKLEE 540 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDVVVTLSHQGYV 549 +L S +++++I EE ++ +F + RR+ + +S D+ D+I E++++ +S +GYV Sbjct: 541 LLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEMLLAISEKGYV 600 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 K + Q RG GKS +++ D + LV HD +L FS +G VYS Y++PE Sbjct: 601 KRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKIPE 660 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA 669 +R A G P+V +L L ERIT+I+PV+EF + M T NG +KK L F +R Sbjct: 661 CSRTAAGTPLVQILSLSDGERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIRCT 720 Query: 670 GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 G +AI+LV DEL V S D V + S G V+ +++RA+G NT G +RL EG Sbjct: 721 GIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRALGRNTRGSVAMRLKEG 780 Query: 730 DKVVSL-IVPRG--------------------DGAILTATQNGYGKRTAVAEYPTKSRAT 768 DKV S+ I+P +L +++GYGKR V+ + T Sbjct: 781 DKVASMDIIPDALQKELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNR 840 Query: 769 KGVISIKVTERNGL----VVGAVQVDDC---DQIMMITDAGTLVRTRVSEISIVGRNTQG 821 G+ K + + L VVG +D +Q+++++ +GT+ R +V +ISI R +G Sbjct: 841 VGLFGYKFSSEDCLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARG 900 Query: 822 VILIR 826 VIL+R Sbjct: 901 VILMR 905 >UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C558B Length = 883 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/752 (46%), Positives = 507/752 (67%), Gaps = 10/752 (1%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I P++I +EL+ SYL YA SVI+ RALPDVRDGLKP RR+L AMN LG + K A Sbjct: 23 INPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCA 82 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++G+ + +YHPHGD+++YD++VRMAQ ++LRY LV GQGNFGSI G AA RYTE RL Sbjct: 83 GIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPPAAHRYTEARL 142 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A EL+ DLE++TVDF+DNYDG + P V+P K PNLLVNGS GIAVGMAT+IPPHNL Sbjct: 143 TPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNL 202 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EV + +D+ ++ L++ IPGPDFPT II GR+G+ EAY G GK+ +RARA+ Sbjct: 203 REVCKALVLLLDNPGATLADLIQIIPGPDFPTGGIIMGRQGLLEAYARGAGKITLRARAQ 262 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES---DKDGMRIV 304 V + K +I++ E+P+QV + ++E+IA LVKE+R+ +S +RDES + + +R++ Sbjct: 263 VMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRLI 322 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +E+KR +VLN LY T+LQ + I M+AL G+P+ + LK+++ F+ HR V+ R Sbjct: 323 VEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVDGRPRELTLKEMLQKFLDHRVHVIRR 382 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT F LR+A+ R H+LE +A+A+I+ +I++ R +P AEAK L L AA++ Sbjct: 383 RTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQG----LAVPAALM 438 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 +RA + A L+ E G Y +TEQQA+A+++LRL +L LE E++L EY +L + Sbjct: 439 QRAIGEGAF-AALQRELGAV-AEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLREL 496 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I +L + VIRE+LE + ++GD R+TE++ + D+++EDLI E VVT+S Sbjct: 497 IRGYETLLSDDANIHAVIREDLERMAAKYGDDRKTEVSDDGGDVDMEDLIVDEPNVVTIS 556 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H+G+VK L+EY Q R G +++ DF++ VA+T ++LCF++ GR+Y +KV Sbjct: 557 HEGFVKRMALTEYRVQGR-GGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLKV 615 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++P A R + GR I N+L L + E+I++I+PV EF EG + MAT GTVKKT L ++ Sbjct: 616 YRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTVKKTDLMAYS 675 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +R G + I L +GDELI V LT DEV+L + +G +RF+ES++R MG GVRGI Sbjct: 676 NVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIRFRESAIRPMGRTARGVRGI 735 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRT 756 +LG+ D +V ++V DG +LT +NGYGKRT Sbjct: 736 KLGKDDALVGMVVADPDGLLLTVCENGYGKRT 767 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 11/204 (5%) Query: 646 VFMATANGTVKKTVLTEFN-RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVV 704 V + G VK+ LTE+ + R V L D D + + S + ++ F+ G++ Sbjct: 552 VVTISHEGFVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMY 611 Query: 705 RFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRG--DGA-ILTATQNGYGKRTAV 758 K + G + G + L EG+K+ S++ R +GA +L AT+ G K+T + Sbjct: 612 WLKVYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTVKKTDL 671 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRN 818 Y + G+I I + E + L+ A+ + D++++ T G +R R S I +GR Sbjct: 672 MAYSNVRQG--GIIGITLDEGDELINVALTRAN-DEVVLSTQKGMAIRFRESAIRPMGRT 728 Query: 819 TQGVILIRTAEDENVVGLQRVAEP 842 +GV I+ +D+ +VG+ VA+P Sbjct: 729 ARGVRGIKLGKDDALVGMV-VADP 751 >UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia RepID=B1ZTK3_OPITP Length = 830 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/855 (43%), Positives = 537/855 (62%), Gaps = 46/855 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + +++ NI + ++++Y+DY+MSVI+ RALPD RDGLKPV RRVLYAM G N Sbjct: 1 MYTASEKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +A+ K A VVG+V+ YHPHGDS+VYDT+VRMAQP+ +RY L+D QGNFGS+DGD AAA Sbjct: 61 RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAY 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL IA +L+ D+E++TVDF NY + P V+P +PNLL+NGS+GIAVGM T Sbjct: 121 RYTECRLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL E+I+ A ID+ IS++ L + GPDFPT +I GR GI +TG+G V Sbjct: 181 NIPPHNLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIAGREGILSYLKTGKGIV 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 R +A E + K G E I+V EIPY VN+A L+ +IAELV +K+++GI LRDESD++ Sbjct: 241 RTRGKAHTE-EMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDEN- 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 RIVIE+KR +VV+N L+ +T L+ SFG+ ++AL +PK MN+K++I ++ HRRE Sbjct: 299 TRIVIELKRGEQSKVVINQLFQKTALESSFGVTLLALDKKRPKQMNIKELIECYIEHRRE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVTRRT F L++A DRAHILE +AL N+D +++IR + EAK L+A Sbjct: 359 VVTRRTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAK------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y L+E+Q AIL+LRL +LTGLE K+ EY E Sbjct: 412 ---------------------------YPLSERQTDAILELRLYQLTGLERGKIEAEYLE 444 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L+ I EL IL S +L+ +I++EL ++E++ RRTEI A + + +ED+I E V Sbjct: 445 LMKLIEELRGILESEPKLLALIKKELAEMKEKYTSPRRTEIIAAAGEFRMEDVIPNEGCV 504 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T+SH G++K P++EY +QRRGGKG A EEDF+ L A+THD+IL F+S G+ + Sbjct: 505 ITVSHLGFIKRTPVAEYRSQRRGGKGVIGAETYEEDFVANLFTASTHDYILFFTSIGQCH 564 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + KVY +PE TR ++G+ + + L L + E+I A+L V +F E + AT G +KK+ L Sbjct: 565 AKKVYDIPEGTRASKGKSVSSFLRLAEGEKIAAMLCVKDFAEDRYLVTATKRGIIKKSAL 624 Query: 661 TEF-NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS-------VR 712 +++ N R G + I L + D +IG LT+GE+E++L S +G VRF+E R Sbjct: 625 SDYANATREGGLIGINLQEADSVIGTVLTTGENELILVSHQGLAVRFRERDPESGEELFR 684 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 A G T GV G+R + +I V + L A++ G G RT +Y +R GV Sbjct: 685 ATGRATGGVTGMRFKLKSDYLDVIEVVDHEAKFLVASEAGLGVRTRFEDYRLINRGGSGV 744 Query: 772 ISIKVTERNGL-VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 +I + E + + GA+ V + D++M++T G +R V +I R +GV L+ Sbjct: 745 WAIDLPEDGSIKLAGALSVREDDEVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPG 804 Query: 831 ENVVGLQRVAEPVDE 845 + ++ + R+ E +E Sbjct: 805 DKLLSIARIVETEEE 819 >UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y742_9BACT Length = 871 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/829 (44%), Positives = 525/829 (63%), Gaps = 42/829 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P + E+K SYLDYAMSVIVGRALPD RDGLKPV RRVLY M LG N+AYKKSA Sbjct: 9 VIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKSA 68 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVG+V+GKYHPHGD+++YDT+VR+AQP++LRY LVDGQGNFGS+DGD AAAMRYTE R Sbjct: 69 RVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAMRYTEARF 128 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A++ ++ D++++TVD+ N+D + K P +P+ +PNLLVNGS+GIAVGMATN+PPHNL Sbjct: 129 AELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHNL 188 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EVI+ ID + + LM ++PGPDFPT II GR GI +AYRTGRGK+ +R R Sbjct: 189 GEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIMGREGIVDAYRTGRGKIIVRGRCV 248 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 VE + R ++++ EIPY VNK LIE IA+ V+E ++G+S LRDESD+ G+RIV+++ Sbjct: 249 VEEGKR--RTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGLRIVLDL 306 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 RD E+V LY++T +Q +FG+ + L +P + LK ++ F+ +RR+VV RRT Sbjct: 307 NRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVELGLKSMLEVFLDYRRDVVRRRTA 366 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F L KA++R HI+E L AL ID +I +IR A T EA L Sbjct: 367 FRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLT---------------- 410 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 E L+ +E+QAQAILD+RLQ+LTGLE +KL E +LL IA Sbjct: 411 -------EQLQ-----------FSEKQAQAILDMRLQRLTGLERDKLTAEMAQLLADIAR 452 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDVVVTLSH 545 IL A L VIR+EL +R +FGDKRRTEI + S + EDL+ +E++V+TLS Sbjct: 453 YQEILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTSDSYEDLMPEENIVITLSK 512 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY++ L +Y Q RGGKG+ A + EED + ++V TH+ +L F+SRGRV+++K + Sbjct: 513 DGYLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKGH 572 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK-VFMATANGTVKKTVLTEFN 664 +PE T+ +GR + + L + E + IL F + V + T G K+ +E Sbjct: 573 MVPE-TKSGKGRKVEQFISLSEGETVVEIL--GRFPDNCSTVVLITRRGIAKRMDKSELQ 629 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 L AG+ + L DGD++ + T+G D++ L SA G+ +R E +R MG + GV+ + Sbjct: 630 NLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTMGRSARGVKAM 689 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 +LG+ D+++S V GD IL +Q G GK T+ E+ RAT G ++++ +R G + Sbjct: 690 KLGKDDEIISCEVIAGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDRTGRLA 749 Query: 785 GAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 A V D++ ++T G ++R V I +GR+ G ILIR + V Sbjct: 750 VANTVFPDDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEV 798 >UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7J5_MYCH7 Length = 853 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/843 (40%), Positives = 527/843 (62%), Gaps = 38/843 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + + I+P+ IE+E+K+S+LDY+MSVIV RALPDVRDGLKPVHRR+LY M LG Sbjct: 39 LESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSG 98 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +YKKSAR+VGDV+GKYHPHGD++VY+++VRMAQPFSLRY LVDG GNFGSIDGD AAAM Sbjct: 99 TSYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAM 158 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+KI+++++ L+K TVDF NYD +E P+V+P K PNLLV+G SGIAVGM T Sbjct: 159 RYTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMT 218 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL E+I+ + + + I I L+ +PGPDFPT A I G++GI +AY TG+G Sbjct: 219 KIPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSF 278 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IRA+A++E + +GR II +EIPY+V K +IEK+A LV+ K++ GI +RDES + G Sbjct: 279 IIRAKAKIE-NLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHG 337 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V E+K+ E++LN LY T LQ+++ INM+AL +G PK+MNL I ++ H++E Sbjct: 338 IRVVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKE 397 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + R F+L KA ++ ++LE + VA+ NID +I++I+ + + A+ L Sbjct: 398 INLRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHT------- 450 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y L Q +AI+++RL +LT L EKL +E +E Sbjct: 451 ---------------------------YNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEE 483 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L +I+E+ I+ S +L+++I E+ + V QFGD RR+EI ++ EDLI E V+ Sbjct: 484 LKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVI 543 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 ++L+ YVK L EY Q RGG G A+ ++D + L + NT +L SS +++ Sbjct: 544 ISLTQNNYVKKMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIF 603 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++ +Q+P+ ++ +G PI+NL+ LE++E I+ ++P + + + +A G +KKT L Sbjct: 604 KLRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTAL 663 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE--VMLFSAEGKVVRFKESSVRAMGCNT 718 + F + GK+A+KL + D L+ + + +++ S++G V R+ +R G Sbjct: 664 SAFRNITKNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRDSGRTA 723 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GV+GI+L EG K++ + I + ++ G+GK+T V EY R TKG++S+ + Sbjct: 724 IGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK 783 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 LV + + + + ++ T G +R + + I+ R T+GV +I + + + + Sbjct: 784 AGNLVFISA-IKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 842 Query: 839 VAE 841 +++ Sbjct: 843 ISK 845 >UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNA3_9BACT Length = 814 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/836 (45%), Positives = 534/836 (63%), Gaps = 41/836 (4%) Query: 15 EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 74 EE+K SYLDYAMSVIVGRALPD RDGLKPV RR+L+AM LG N++YKKSARVVG+ + Sbjct: 17 EEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKSARVVGETM 76 Query: 75 GKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 134 GKYHPHGDSA+YDT+VR+AQ FS+RY LVDGQGNFGSIDGDSAAAMRYTE RL ++ + Sbjct: 77 GKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRYTEARLQELGELM 136 Query: 135 MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 194 + D++++TV++ N+D + K P V+P+++PNLLVNGS+GIAVGMATN+PPHNL EV++ Sbjct: 137 LQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHNLGEVVDAI 196 Query: 195 LAYIDDEDISIEG-LMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAK 253 I+ D + G LM +PGPDFPT +I G+ GI +AYRTGRG++ ++ VE + K Sbjct: 197 CYLIEAGDQADFGELMARMPGPDFPTGGVILGKDGIIDAYRTGRGRLVVQGLVHVE-EGK 255 Query: 254 TGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG 313 G+ +++ EIPY VNK +IE IA V+ K ++G++ +RDESD+ G+R+V+EV RD Sbjct: 256 RGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLRVVLEVSRDVDP 315 Query: 314 EVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKA 373 ++V+ LY ++QLQ +FG+ +AL G+P ++L D++ F+ HRR VV RRT F L+KA Sbjct: 316 DLVIRQLYRRSQLQNTFGVINLALVDGRPVELSLTDMLNVFLGHRRTVVRRRTEFRLKKA 375 Query: 374 RDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAAR 433 RAHILE L AL ID +I LIR + A AK LVA Sbjct: 376 EARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVA--------------------- 414 Query: 434 PEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILG 493 E +F +E QAQAILD++LQ+LTGLE +KL DE+ LL I IL Sbjct: 415 ----ELDF---------SEIQAQAILDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILD 461 Query: 494 SADRLMEVIREELELVREQFGDKRRTEITAN-SADINLEDLITQEDVVVTLSHQGYVKYQ 552 S L VI EEL ++ ++GD RRT+I D + EDLI +ED+VV LS GY++ Sbjct: 462 SEKVLDGVIVEELVALKGKYGDDRRTKIVDRVGQDCSDEDLIPREDIVVMLSRDGYLRRV 521 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 PL +Y Q +GGKG+ AR++EED + + V+ THD I F+++GRV+++K Y + E +R Sbjct: 522 PLEDYSLQAKGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISE-SR 580 Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 +G+ I + LE DER+ ++ E G +F T G K+ +E + L AG+ Sbjct: 581 TGKGKLIGKYISLENDERVVSMKTRRGQESGF-LFFLTRRGIAKRLPSSELDNLTRAGRR 639 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKV 732 + L +GDE+ + TSG D+++L SA G+ +R E R MG + GV+ +RL +GD++ Sbjct: 640 VVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPMGRSARGVKAMRLKDGDRI 699 Query: 733 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 +S V D + ++ G GKRT ++ R G+ + + R GL+ A V + Sbjct: 700 ISGEVVTEDRRPILVSETGIGKRTNFEDFTVHHRGGGGMKVMSINSRTGLLAAATSVSED 759 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848 D+I+++T G ++R EI ++GR G I++R ++VV L V +D EDL Sbjct: 760 DEIIVMTAKGRMIRVAAKEIRVLGRTAAGSIVVRLDGGDSVVDLSVVN--MDGEDL 813 >UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae RepID=C7MEZ8_BRAFD Length = 943 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/834 (42%), Positives = 520/834 (62%), Gaps = 51/834 (6%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 IT +++ E++ SYLDYAMSVIV RALPDVRDGLKPVHRR++YAM G ++++ K A Sbjct: 70 ITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPDRSFSKCA 129 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 +VVG+V+G YHPHGDSA+YD +VR+ QP+S+RY L+ GQGNFGS D AAA RYTE ++ Sbjct: 130 KVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAAAPRYTECKM 189 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A +A EL+ D+E++TVD NYD T P V+P + PNLLVNGS+GIAVGMATNIPPHNL Sbjct: 190 APLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 249 Query: 188 TEVINGCLAYIDDEDIS----IEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 EV + + + + + +E ++ I GPDFP+ A I G GIE+AYRTGRG I Sbjct: 250 REVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIVGTSGIEDAYRTGRGS--IT 307 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMR 302 RA V + GR +++V E+PYQVN L KIAE+VK +++GI+ + DE S + G R Sbjct: 308 QRAVVSTEEINGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDETSGRTGQR 367 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +VI +KRDAV +VVLNNLY TQLQ +F NM+AL +G P+ +++ + + +H+ +V+ Sbjct: 368 LVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANGVPRTLSIDSFVREWTKHQIDVI 427 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT F LRKA ++ HI AL +D +I LIR +P EA+T L+ Sbjct: 428 VRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLM----------- 476 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 L + E QA AIL ++L++L LE +K+++E+ L Sbjct: 477 -----------------------DLLEIDEIQANAILAMQLRRLAALERQKIIEEHDRLQ 513 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 I E IL R +++ EEL + ++FGD RRTEI + D+ +EDLI +ED+VVT Sbjct: 514 ALIEEYTAILADPQRQRDIVSEELAEIVDRFGDDRRTEILPFAGDMEMEDLIPEEDMVVT 573 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 ++ GYVK +Y AQ+RGGKG A ++E+D ++ TH +L F+++GRVY Sbjct: 574 ITRGGYVKRTREDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRA 633 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 K Y+LPEA R A+G+ + NL+ + DE I ++L + +E+ + +AT +G VKKT + Sbjct: 634 KGYELPEAPRDAKGQHVANLMAFQPDENIASVLAIDSYEDAQHLVLATESGLVKKTPMPA 693 Query: 663 FNRLRTAGKVAIKL--VDG------DELIGVDLTSGEDEVMLFSAEGKVVRFK--ESSVR 712 F+ RT G +AI L +DG D +I + +DE++L S G+ VRF + ++R Sbjct: 694 FDSSRTGGIIAINLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDGTLR 753 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 G T+GV G++ D ++++ V R D ++T T G+ KRT V EY + R G+ Sbjct: 754 PTGRATSGVTGMKFRHQDTLLAMDVIRPDSFVITVTDGGFAKRTTVDEYRLQGRGGLGIR 813 Query: 773 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 K+ + G +VGA V++ D+++++ + G +VR++V+E+ GR T GV+ + Sbjct: 814 VAKLPDDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAK 867 >UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5P0_9BACT Length = 836 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/840 (42%), Positives = 519/840 (61%), Gaps = 38/840 (4%) Query: 15 EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 74 EE+K SYLDYAMSVIVGRALPD RDGLKPV RR+LYAM LG N+ YKKSARVVG+ + Sbjct: 18 EEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQPYKKSARVVGETM 77 Query: 75 GKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 134 GKYHPHGDSA+Y+T+VR+AQ +S+RY LVDGQGNFGSIDGDSAAAMRYTE R A+ + Sbjct: 78 GKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRYTEARFAETGELM 137 Query: 135 MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 194 +AD++++TVD+ N+D + K P +P+ +PNLL+NGS+GIAVGMATN+ PHNL EV++ Sbjct: 138 LADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNMAPHNLGEVVDAL 197 Query: 195 LAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKT 254 I D ++ LM +PGPDFPT II GR GI +AYRTGRGK+ +R + VE +++ Sbjct: 198 RLLIRRPDAELDDLMSCLPGPDFPTGGIIMGREGILDAYRTGRGKIILRGKCHVEQKSRS 257 Query: 255 GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGE 314 + +++ EIPY +NK LIE I + V+ K+++G+S +RDESD+ G+R+V+E+ R+A E Sbjct: 258 -KTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLRLVVELTREADAE 316 Query: 315 VVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKAR 374 +V LYS+T LQ +FGI +AL +P +NLK ++ F+ +RR VV RRT F L KA Sbjct: 317 LVQRQLYSRTSLQSTFGIINLALVDNKPVELNLKQLLETFLNYRRSVVRRRTQFRLDKAE 376 Query: 375 DRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARP 434 R HI+E L AL ID +I +IR A T +AK L+ Sbjct: 377 ARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLI----------------------- 413 Query: 435 EWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGS 494 G T+ QAQAILD+RLQ+LTGLE EKLL E +LL I IL + Sbjct: 414 -----------GELAFTDLQAQAILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDN 462 Query: 495 ADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDVVVTLSHQGYVKYQ 552 L VI +EL +R +F D+RRTE++A + +LEDL+ +ED++VTLS G+++ Sbjct: 463 PSVLDGVINDELGELRRKFADERRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRS 522 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 PL Y Q RGGKG+ A +K++D + ++ V +TH I F+SRGRV++++ + +PE T+ Sbjct: 523 PLENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPE-TK 581 Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 +GR + + L DER+ A+ E + T G K+ E L AG+ Sbjct: 582 TGKGRAVSKFVSLTDDERVVAMRGTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRR 641 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKV 732 + L DGDE+ + T G +V+L +++ K ES R MG GV+ ++L D++ Sbjct: 642 VLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPMGRAARGVKAMKLAPDDRI 701 Query: 733 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 ++ D +L ++ G GKRT E+P R + GV ++ + R G + AV V Sbjct: 702 IAAWTVAPDENLLLVSETGIGKRTKPEEFPIHHRGSGGVQAMHLGARTGRLAAAVGVASS 761 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTID 852 D++ ++T+ G ++R S+I ++ R G I++R + + + + + P+ E L D Sbjct: 762 DEVGLMTEKGRMIRLSASDIPLLSRTATGSIVLRLNDGDLLASVSVIPAPMAPESLTDAD 821 >UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae RepID=D2QWS9_9PLAN Length = 938 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/748 (49%), Positives = 501/748 (66%), Gaps = 12/748 (1%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 IE+ELK SYL YAMSVIV RALPDVRDGLKP RR+L AMN L K A++ GD Sbjct: 30 IEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRVKCAKISGD 89 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 G YHPHG+S +Y T+VRMAQ +++R++L+D QGNFGSI G AAMRYTE RL+ +A Sbjct: 90 TSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAAMRYTEARLSPVAS 149 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 ++ DL +TVDFV YD + P V+P + PNLLVNG+ GIAVGMAT+IPPHNL EV Sbjct: 150 MMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIPPHNLGEVCE 209 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 + IDD ++++ L E I GPDFPT I GR GI YR GR + +RA+ +E + Sbjct: 210 ALVKVIDDPEVTLGELCEIIKGPDFPTGGTICGRAGIRRGYRDGRSTIVLRAKTRIE-EH 268 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIEVKRDA 311 K R II+ EIPYQ + R++EKIAELV E+R++GIS + D SD K+ + +VI++KRDA Sbjct: 269 KKDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVHLVIDIKRDA 328 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 VVLN LY + LQ S I ++AL G+P+ ++LK+++ F+RHR V+ RRT F L Sbjct: 329 DPYVVLNQLYQFSPLQDSISIILLALVDGKPRELSLKELLEEFLRHRVTVIRRRTQFLLS 388 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA-GDD 430 KAR R H +E L +ALANID II +IR + T AEAK L+ + AAM++RA G++ Sbjct: 389 KARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMG----VECPAAMMQRALGEE 444 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 + E G D Y LT Q++AIL + L +L LE E+L E+ ELL +IAE LR Sbjct: 445 GF--AMFQSERGASD-TYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIAEYLR 501 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANS-ADINLEDLITQEDVVVTLSHQGYV 549 IL + + +I+EEL + ++GD+RRTEI+ D+NLEDLIT+E +VV++SH+GY+ Sbjct: 502 ILADENIIRAMIKEELIAIAAKYGDERRTEISGEEIGDVNLEDLITEETMVVSISHRGYI 561 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 K P S Y AQRRGGKG A+ ++ED I L VA+TH ++L F++ GRVY KVY LPE Sbjct: 562 KRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKVYDLPE 621 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEF-EEGVKVFMATANGTVKKTVLTEFNRLRT 668 +R +RGR IVNLL L + E+I + + +F ++G + MAT G VKK+ L +++R + Sbjct: 622 LSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSPLEDYSRPKK 681 Query: 669 AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE 728 G +AIKL + DE++ V +T DEV+L ++ G +RF ES R MG NT+GV+GI L Sbjct: 682 GGIIAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIRFSESDARPMGRNTSGVKGISLAS 741 Query: 729 GDKVVSLIVPRGDGAILTATQNGYGKRT 756 GD +V ++V D +LT +NGYGKRT Sbjct: 742 GDSLVGMVVADPDATLLTVCENGYGKRT 769 >UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae RepID=A7HL65_FERNB Length = 823 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/823 (44%), Positives = 536/823 (65%), Gaps = 45/823 (5%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E+EL SYL Y+MSVI+GRA+PDVRDGLKPV RR++Y+M LG NK +KK+AR+VG+ Sbjct: 26 LEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPFKKTARIVGE 85 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 V+GKYHPHGDS++Y+ +VRMAQP+ +RY LV+GQGNFGSID D AAMRYTE RL KIA Sbjct: 86 VMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMRYTEARLHKIAE 145 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 E++ D++K+TV +DN+DG+ + PDV+P K+PNLL+NG+SGIAVGMATNIP HNL +V++ Sbjct: 146 EMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIPTHNLNDVVD 205 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 +AYI + DIS+E L++ I GPDFPT II G+ GI E Y TG+G IR +AE++ + Sbjct: 206 ATIAYIKNRDISVEELIDIIKGPDFPTGGIIIGKSGIREMYITGKGGFTIRGKAEIKHEK 265 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 K +++II+ EIPY ++KA LI++IA+ ++E+ + + LRDESDKDG+R+VIE D Sbjct: 266 K--KKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGLRVVIEFPEDVK 322 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 EV+LNNLY +T LQ F N + + QP++MNLK +I A+V+HR EVV +RT + + Sbjct: 323 EEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEVVRKRTQYAYQ 382 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 + RAHI+E L A ID ++ +IR + +EA + LV Sbjct: 383 QDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLV-------------------- 422 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 + ++E+QA+A+LD+RL +LT LE + L EY++LL ++ + + Sbjct: 423 --------------DILQMSEEQAKAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKEL 468 Query: 492 LGSADRLMEVIREELELVREQFGDKRRTEIT---ANSADINLEDLITQEDVVVTLSHQGY 548 L + D++ EVI EELE +++++GD R+TEIT + + +DLI +D+V+TL+ +G+ Sbjct: 469 LMNDDKVYEVIIEELEEIKKKYGDPRKTEITDLEETATKFDKKDLIPNKDIVITLTKKGF 528 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 +K + + QRR GKG A + E+D I +++ + H L F+S G+VY ++ + Sbjct: 529 LKLMDIDAFRTQRRNGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIE 588 Query: 609 EATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT 668 E+ RG +G+PI + LE ER+ A++ +T++ ++F T G VK+T L +F + + Sbjct: 589 ESNRGTKGKPINKYIKLENGERVLAMVDITDYVG--ELFFVTKKGVVKRTSLEDFKNITS 646 Query: 669 AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE-GKVVRFKESSVRAMGCNTTGVRGIRLG 727 G AI DGDEL+ V + E +L S + G +RF VR MG N GVRGIRL Sbjct: 647 KGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTMGRNAAGVRGIRLR 706 Query: 728 EGDKVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 EGD+V+S V D G ILT T+NGYGK T V++Y +SR G+ +I E+ G +VG Sbjct: 707 EGDEVISSTVLENDNGYILTITENGYGKLTEVSDYRKQSRDGLGIKNIGEIEKTGPIVGV 766 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 V+ ++I++ T G ++ +VS+I R QGV ++ A+ Sbjct: 767 AYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLAD 809 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 13/204 (6%) Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR-GRVYS 601 ++ +G VK L ++ + KG A K+ D + +L N+ + + S++ G Sbjct: 627 VTKKGVVKRTSLEDF--KNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIR 684 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + ++ R A G + L E DE I++ V E + G + T NG K T ++ Sbjct: 685 FGIEEVRTMGRNAAGVRGIRLR--EGDEVISS--TVLENDNGY-ILTITENGYGKLTEVS 739 Query: 662 EFNRLRTAGKVAIKLVDGDE----LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 ++ + G + IK + E ++GV +G++E++LF+ +G ++FK S + Sbjct: 740 DYRKQSRDG-LGIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRT 798 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGD 741 GV+ + L +GD V V G+ Sbjct: 799 AQGVKVMNLADGDIVADFAVIGGE 822 >UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=Cyanobacteria RepID=A8G5D2_PROM2 Length = 865 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/851 (42%), Positives = 521/851 (61%), Gaps = 66/851 (7%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I ++ E+ SYL+YAMSVIVGRALPD RDGLKPVHRR+LYAM LG + Y+K A Sbjct: 19 IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKCA 78 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVG+V+GKYHPHGD+AVYD +VRMAQ FS+R L+DG GNFGS+D D AAMRYTE RL Sbjct: 79 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRL 138 Query: 128 AKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + E L+ D+E ETVDF DN+DG+++ P V+P +IP LL+NGSSGIAVGMATNIPPHN Sbjct: 139 QSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHN 198 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L E+ING + I + I L E I GPDFPT I GR GI E ++TG+G + +R A Sbjct: 199 LGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGREGIRETFKTGKGSITMRGVA 258 Query: 247 EVEVDAKTGR---ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 +E GR + +I+ E+P+Q NKA LIE+IA+LV EK++EGIS +RDESD+DGMRI Sbjct: 259 NIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDRDGMRI 318 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 VIE+KRD+ +VVLNNL+ T LQ +F N++AL G+P ++L+ ++ F+ R E + Sbjct: 319 VIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFRVETIR 378 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT F L+KA +R HI++ L +AL +D II LIR A A+ Sbjct: 379 RRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAR---------------- 422 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 E L+ E + L+ Q+ AIL ++L++LT LE +K+ +E+ EL Sbjct: 423 -----------EKLQNE-------HKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTR 464 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 +I +IL S +R+ E+I EEL + +F R+TEI ++ DLI + VV L Sbjct: 465 KINLYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIANDRSVVLL 524 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + GY+K P++++E+ RG +GK+ + KE+D + + N HD +L FS RG Y++ Sbjct: 525 TEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALP 584 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 Y++P ++R A+G P V LLP+ ++E+IT+++ V F + + M T G +K+T L+ F Sbjct: 585 AYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAF 644 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE--SSVRAMGCNTTGV 721 +++R+ G +AI L DGD L V L+ D V++ S G + F+ + +R +G GV Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGV 704 Query: 722 RGIRLGEGDKVVSLIV-------------------------PRGDGA-ILTATQNGYGKR 755 + + L EGD +VS+ V DG +L A+ G GKR Sbjct: 705 KSMNLREGDNLVSMDVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKR 764 Query: 756 TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV 815 VA++ + RA G+ +IK ++ +V + + ++++++T+ G +VRT +IS Sbjct: 765 VPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQ 824 Query: 816 GRNTQGVILIR 826 R GV L R Sbjct: 825 SRAATGVKLQR 835 Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 28/234 (11%) Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 591 D + ++ L+ G++K LS + R G A +++ D + + ++ D +L Sbjct: 619 DSFVDDRYLLMLTKAGFIKRTALSAFSKIR--SNGLIAINLEDGDALTWVRLSKEGDSVL 676 Query: 592 CFSSRGRV--YSMKVYQLPEATRGARGRPIVNL-----------LPLEQDERITAILPVT 638 S G + + + +L R ARG +NL L +++ I +T Sbjct: 677 IGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT 736 Query: 639 E---------FEEGVKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKL-VDGDELIGVD 686 E +G V +A+A G K+ + +F + AG AIK + D+L+ + Sbjct: 737 EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLK 796 Query: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-VPR 739 + +E++L + +G +VR + TGV+ RL +GD + ++ VPR Sbjct: 797 VLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVPR 850 >UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXA6_HALOH Length = 796 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/847 (40%), Positives = 538/847 (63%), Gaps = 55/847 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A +I + IE+++K SYL Y++SVI RALPDVRDGLKPVHRR+LYA LG +K + Sbjct: 1 MAEKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPH 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VG+V+GKYHPHGD++VYD +VRMAQ F+ RY L+DG GNFGSIDGDS AAMRYT Sbjct: 61 KKSARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL ++A ++MAD+ ++TVDFVDN+DG+ + P+++PTK+PNLL+NG+SGIAVGM+T+IP Sbjct: 121 EARLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EV++ + + + +E +M++IPGPDFPT A I G GI++AY+TG GK+ +R Sbjct: 181 PHNLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIVGLSGIKKAYKTGNGKITLR 240 Query: 244 ARAEVEVDAKTGRET-IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 AR ++E K GR+ II+ EIPY +NK +L+E IAEL+ + +++ +S LRDESD++G+R Sbjct: 241 ARTQIE---KKGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLR 297 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IV+E+K A +++LN LY T LQ ++ INM+AL QP++M+L I+ F+ RR+V+ Sbjct: 298 IVVELKSGADPDIILNQLYKFTSLQTNYRINMLALDGKQPRVMDLITILKNFINFRRQVI 357 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 TRRT ++L KA++R H+L+ L A+ +D +I +IRH+ + EA+ L Sbjct: 358 TRRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKL------------ 405 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 E L +TE+QA+AIL +RLQKL G+E EKL E L Sbjct: 406 -----------QEKL-----------VITEKQAEAILRMRLQKLVGMEEEKLHQESAGLE 443 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDVV 540 +QI +IL + + L +V+++EL ++ ++ DKR+TEI + A I DLI +E V Sbjct: 444 EQIKYYKKILNNKNELDKVLKKELLDIKNKYADKRKTEIIEDEEKAIIEKTDLIKKEKVF 503 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T S++ +K SEY AR + D+I + T D +L F++ G VY Sbjct: 504 LTFSYRQNIKRTTSSEY------------ARAGKNDYIIDTMTGTTLDTLLFFTNTGDVY 551 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++ V+++PE + G I + L + ++I ++ + E + + +AT G VKKT+ Sbjct: 552 TLPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVICLNEETKEKYITIATKQGMVKKTIG 611 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E+ + K AIKL GDE++GV++T G E++L + + K +RF+E SV G NT G Sbjct: 612 GEYQTTYSRIK-AIKLNKGDEVVGVEITDGNQEILLGTKKAKTIRFEEDSVSDTGRNTIG 670 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 GI+L +GD+VVS + + ++++ ++ G GKR+ + EY ++R KG+ + + Sbjct: 671 SIGIKLAKGDEVVSFNLVNNNTSVVSISKTGRGKRSPIEEYNPQNRNGKGLKTCGSSIYK 730 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 + G + + D I++ T L +V++++ R ++ D+ + G++++ Sbjct: 731 --MAGVICANPDDYILITTGNEKLYTVKVNDLTETSRTGNMYEVVSLKNDDKITGVEKLP 788 Query: 841 EPVDEED 847 +E++ Sbjct: 789 FAPEEDN 795 >UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5 Tax=Thermoplasmatales RepID=Q9HJB6_THEAC Length = 796 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/824 (41%), Positives = 514/824 (62%), Gaps = 42/824 (5%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E E++ SYL+YAMSVIV RA+PDVRDGLKPV RRVLY+M LG +K YKK AR+VG+ Sbjct: 9 VEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVGE 68 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 +GKYHPHGD A+YD +VRMAQ FSLRY LVDGQGNFGSIDGDS AAMRYTE RL +IA Sbjct: 69 TMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIAE 128 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 ++M D+++ TV F N+DGT P+ +P+KIPNLL+NGSSGIAVGMATN+ PHNLTE+ + Sbjct: 129 DMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEICD 188 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 L +D D ++ L++++ GPDFP I+ + + EAYRTGRGKV ++ EVDA Sbjct: 189 AILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG----EVDA 244 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 R +I+ IPY VNKA L++ IA+L K + ++ I+ ++DESD++G+RIVI+V+ D + Sbjct: 245 TEDRR-LIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVRDDDI 303 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 +VLN LY T L+ S GI + L QPK+MNLKD+I +F+ HR +V+ RR+ F L + Sbjct: 304 KPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFRLDR 363 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 ++R +L + A+ +ID ++E+++ + EA + L Sbjct: 364 KKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKL---------------------- 401 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 R E + L ++Q +AIL++RLQ+L E E + E ++ +I +L I+ Sbjct: 402 RNE------------FDLNDRQIKAILEMRLQRLVNTEQESVRSEIAQIQAEIKDLEEII 449 Query: 493 GSADRLMEVIREELELVREQFGDKRRTEITANS-ADINLEDLITQEDVVVTLSHQGYVKY 551 S DR ++ ++E+ +++++GDKRR+ I + +EDLI E+ ++ LS+ G VK Sbjct: 450 LSEDRRIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKR 509 Query: 552 QPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEAT 611 EY +QRRGGKG + + +K D I ++ +HD + F++ GRV+ K Y++P+ + Sbjct: 510 VQADEYRSQRRGGKGVNTS-MKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKS 568 Query: 612 RGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK 671 R + G L L Q ER+T I+ E+G + + T +G+VKKT +++G Sbjct: 569 RTSLGVSAAAFLKLAQGERVTEIMKAPP-EKGYYLILVTRDGSVKKTAADPVFDSKSSGL 627 Query: 672 VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDK 731 I L D DEL+ V T+G+ + + S++GK F S +R G + GVR +RL EGD Sbjct: 628 KIITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGDT 687 Query: 732 VVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD 791 +++ V D IL+ ++ GYGKRT ++E+P R + GV+ + TER G V A+ V D Sbjct: 688 ILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSHAIPVRD 747 Query: 792 CDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 D++++++ +R + SEI R T GV L+ D+ V+ Sbjct: 748 EDEVILVSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIA 791 >UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5RLZ1_BORDL Length = 815 Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust. Identities = 340/830 (40%), Positives = 530/830 (63%), Gaps = 38/830 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 ++ + IE+E+++SYL+YAMSVIV RALPDVRDGLKPVHRR+LY+M+ +G +K++KK+ Sbjct: 14 QVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDKSFKKA 73 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 R+VGDV+GKYHPHGD ++Y+ +VR+AQ FSLRY +V GQGNFGSIDGD AAMRYTE R Sbjct: 74 GRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMRYTEAR 133 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 +AKIA EL+ D++K+TV+F NYD + P+V+P P LLVNGSSGIAVGMATN+ PHN Sbjct: 134 MAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAPHN 193 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV + + ++ +D+SI L+ I GPDFPT A I + +AY TG+G V IRAR Sbjct: 194 LREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVVIRARY 253 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 +E + +II+ +IPY VNK+ L+ KIA L+KE+++EG+S +RDESD++G+RIV+E Sbjct: 254 HIE-EKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIRIVLE 312 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K+ VV+N LY T+L+ +F IN +AL +G PK +NL+++I+ F+ HR+ ++ RR Sbjct: 313 IKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNILRRRV 372 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F+L++A+++AHILE L +AL NID +IE+IR + +A+ Sbjct: 373 EFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDAR------------------- 413 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 E + EF L+E QA +ILD++LQKLT LE K+ ++++ +L I Sbjct: 414 --------ECIMREFQ-------LSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIK 458 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS--ADINLEDLITQEDVVVTLS 544 + IL S R++ +IREE+ + +FGD RRT+I + ++ DL+ +E+V+V L+ Sbjct: 459 DYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILT 518 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 QG++K EY+ Q GGKG + +++ D ++ L NTHD +L S+ G++Y + Sbjct: 519 KQGFIKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINA 578 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y + +++R +RG+ I L+ L + E I AI +E + + TANG + + F Sbjct: 579 YGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDNYLLITTANGKIARIETEGFK 638 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +++ G + +KL D D + ++ S +D+++ S +G F + +R T GV G+ Sbjct: 639 TVKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGVSGM 698 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT-ERNGLV 783 ++ EGD ++ + + +L ++NGYGKR V++ R + G K + E+ G V Sbjct: 699 KVREGDMLIKALAIKQGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEV 758 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 V A+ V D+I++I+ + ++RT V +IS G++ +G+ ++ ED+ V Sbjct: 759 VDAITVSQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDEDKLV 808 >UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q2ST76_MYCCT Length = 795 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 357/831 (42%), Positives = 514/831 (61%), Gaps = 45/831 (5%) Query: 26 MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 85 MSVIV RALPD++DGLKPVHRR++YAMN LG +K +KKSAR+VG+VIGKYHPHGDSAV Sbjct: 1 MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60 Query: 86 YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 Y+T+VRMAQ FS RY L+DG GNFGSIDGD AAAMRYTE RLAKI++ L+ D++ +TV F Sbjct: 61 YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120 Query: 146 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISI 205 +DNYD +E P + +PNLLVNG+ GIAVGMAT+IPPHNL EV++ AYID+ DI+I Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180 Query: 206 EGLME-HIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEI 264 + +++ HI GPDFPT A++ + E Y+TGRG V IRA+ + E + K R +V EI Sbjct: 181 DEILDNHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENKKHDR--FVVTEI 238 Query: 265 PYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQT 324 PYQ NKA++IEKIAELVK+K +EGI +RDES+ +G+RI+IE+K+DA +VVL+ LY T Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYT 298 Query: 325 QLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALA 384 LQ SF IN++ L++ P +++LK II +V + V+ +R+IFE K R HILEAL Sbjct: 299 ALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEALH 358 Query: 385 VALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVR 444 +AL N+D +I +I+++ T EAK L Sbjct: 359 IALDNVDDVINIIKNSKTSEEAKIQLTNK------------------------------- 387 Query: 445 DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 504 Y E+Q +AILD+RLQ+L GLE +K+ E + +++ L ++ + + V++ Sbjct: 388 ---YNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKN 444 Query: 505 ELELVREQFGDKRRTEITANSADINLED--LITQEDVVVTLSHQGYVKYQPLSEYEAQRR 562 +L + ++FGD RRTE+ IN+ED LI ++ LS +GY++ E+ Q+R Sbjct: 445 QLNEIADKFGDNRRTELIDEEL-INIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKR 503 Query: 563 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNL 622 GG+G S + D ID + D +L F++ G+VY K+Y + +R ARG PIVN Sbjct: 504 GGRGVS-VNAEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNF 562 Query: 623 LP-LEQDERITAILPVTEFEEGVKVF-MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGD 680 L L +++ITAILP+ +E T G +K+T ++EF + GK AI L + D Sbjct: 563 LNDLTSEDKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLREND 622 Query: 681 ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG 740 +L+ V T+G+D + + + GKV+R KES V +GVR ++L D VV I Sbjct: 623 QLVSVFATTGQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLETNDVVVGAISSFK 682 Query: 741 DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITD 800 I T + G K+T + +Y R KG+ + + +R G + + D I++I+ Sbjct: 683 LTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISS 742 Query: 801 AGTLVRTRVSEISIVGRNTQGVILIRTAEDE--NVVGLQRVAEPVDEEDLD 849 G L++T+VS I + RN GV IR A+++ N + L+ ++ ED + Sbjct: 743 DGNLIKTKVSNIPSLSRNASGVKAIRLADNQEINAITLEYRKHGLENEDFE 793 >UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FW91_DESHD Length = 808 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 348/816 (42%), Positives = 503/816 (61%), Gaps = 52/816 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MS IT ++EE L SYL Y+ VI+ RA+PDVRDGLKPVHRR++YAM+ LG + Sbjct: 1 MSIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPD 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K Y KSAR+VGD +GKYHPHGDS++YD VRMAQP++ RY L+DGQGNFGSIDGD AAAM Sbjct: 61 KPYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R+ ++ + D+EK+ + F NYD EK P V+P+ PNLLVNG SGIAVGMA+ Sbjct: 121 RYTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMAS 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EV+ + ID+ +++E LME + GPDFPT +I G +G EAYR+GRGKV Sbjct: 181 NIPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKV 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R +A +E K G+ I++ EIP+QV+K+ L KI + ++EGIS +RDESD++G Sbjct: 241 TMRGKAIIE-SGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFG-INMVALHHGQPKIMNLKDIIAAFVRHRR 359 +R+V+E K+DA + +L LY TQLQ +FG IN+V G P+++ LK+I ++++HRR Sbjct: 300 IRLVVECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRR 359 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVV RRT +EL KA+ RAHILE L +A+ N+D ++++IR + TPA AK L+ Sbjct: 360 EVVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR------ 413 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + +E QAQAILD++LQ LT LE + + EY Sbjct: 414 ----------------------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYA 445 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE-- 537 E+L IAEL IL +++ +I+ EL+ + +Q+GD+RRT I ++ +E Sbjct: 446 EILKLIAELESILADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPE 505 Query: 538 -DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + V L+ +G++K P RR A K+ D + + + D + F+ Sbjct: 506 KPMEVLLTRKGFIKQIPTP----TRRSQINAIAFAFKDGDVLLEHVSCTSKDTLYFFTHS 561 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G+ Y K + EA +GR + NL PL ++ERI A++ + E +EG T +G V Sbjct: 562 GKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQYFVFVTKDGQVM 621 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 ++ + +F RTA + +K + DE++ V L++GE E+ L S +G+ +RF E+ V MG Sbjct: 622 RSPVKDFLNARTAEAMGLK--EQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMGR 679 Query: 717 NTTGVRGIRLGEGDKVVS--LIVPRGDGA---ILTATQNGYGKRTAVAEYPTKSRATKGV 771 + GV+G+ L EGD VV LI P DG ++T T+ GY KRT++ EY + RA +G+ Sbjct: 680 KSRGVKGMTLNEGDYVVDALLIQPGADGETGDLITVTEQGYVKRTSLEEYKPQGRAGRGI 739 Query: 772 ISIKV-TERNGLVVGAVQVDDC-DQIMMITDAGTLV 805 K+ E+ G +V +QV D+++ I AG V Sbjct: 740 AIAKIDAEKTGYLVSLIQVGPKEDKLLHIIQAGGAV 775 >UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 Tax=Thalassiosira pseudonana RepID=B8BXG7_THAPS Length = 820 Score = 627 bits (1618), Expect = e-178, Method: Compositional matrix adjust. Identities = 343/824 (41%), Positives = 500/824 (60%), Gaps = 53/824 (6%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 + YA+S+I+GRALPD RDG+KPVHRR+LYAMN LG + +Y+K ARVVG+V+GKYHPHG Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE-LMADLEK 140 D+AVYD +VR+AQPFS L+DG GNFGSID D AAAMRYTE RL +IA E L+ D+ Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID- 199 +TV+F+ N+DG+E P V+P K+P LL+NG +GIAVGMATN+PPHNL E+++ C+A Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180 Query: 200 ----DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV----- 250 E+++ L++ IP PDFPT A I G+ G Y TG G V +RA +E Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240 Query: 251 -DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 K+ R IIV E+PYQVNKA L+E+IA LV EK++EGI+ LRDESD+DG+R+VIE+KR Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHG--QPKIMNLKDIIAAFVRHRREVVTRRTI 367 DAV VV NNL +T LQ +F N +AL G P+ L++ + F+ R + + + Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F+L K +RAHI+ L +AL + D +I ++R+AP A A+ AL++ Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTD------------- 407 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 P+ G L+ QA A+L L+L +LT L +KL DE K L + Sbjct: 408 ----------NPKLG-------LSSAQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTN 450 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L +L + + + + EE ++++FG R+T+I + D DL+ E V+ ++ G Sbjct: 451 LRNLLTNDAAVRDTMLEEFMAMKKRFGTPRKTKILPDEEDKADIDLVQNERSVIVVTRGG 510 Query: 548 YVKYQPLSEYEAQRRGGKGK--SAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 Y+K PL +E+Q RG +GK ++ I +++ + N HD +L + G Y ++ Y Sbjct: 511 YIKRMPLKTFESQNRGTRGKRGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAY 570 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 Q+PE R ARG PI ++LP++ D+ IT++LPV+EF + + +AT G +KKT L F + Sbjct: 571 QVPEGGRTARGAPIPSVLPVKSDDVITSVLPVSEFSKNEFIVLATEYGWIKKTPLAAFEK 630 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 L G + L DGD L + + D++++ S G+ RFK + +R + GV+ + Sbjct: 631 LTQRGLIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRPTARTSRGVKSMT 690 Query: 726 LGEGDKVVSLIVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 L +GD + + V R D +L T GYGKR E+ T +R GVI+IK + G V Sbjct: 691 LKKGDTIADMNVLRKEDKFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKF--KAGRVD 748 Query: 785 GAVQ----VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL 824 + V++ D+I++IT G +VR +VS+IS GR GV++ Sbjct: 749 DRISTMRVVNEDDEILLITSQGVIVRQKVSDISCQGRAATGVLV 792 >UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorferi group RepID=GYRA_BORBU Length = 810 Score = 627 bits (1617), Expect = e-178, Method: Compositional matrix adjust. Identities = 335/819 (40%), Positives = 516/819 (63%), Gaps = 38/819 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I V IE+E+K+SYL+YAMSVIV RALPDVRDGLKPVHRR+LY+M +G +KA+KK+ Sbjct: 9 QILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFKKA 68 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 R+VGDV+GKYHPHGD ++YD +VR+AQ FSLRY ++ GQGNFGSIDGD AAMRYTE + Sbjct: 69 GRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTEAK 128 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + KI ++ D++KETV+F NYD + P++MP+ P LLVNGSSGIAVGMATN+ PHN Sbjct: 129 MEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAPHN 188 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L E+ + + +D+E+ SI L++ + GPDFPT I + +AY+TG+G V IRAR Sbjct: 189 LREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVIRARY 248 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 +E A+ R IIV EIPY VNK+ L+ K+A L KE+++EG+ +RDESD++G+RIV+E Sbjct: 249 HIEERAED-RNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIVLE 307 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 VKR V++N LY T+ + F IN +AL +G PK +NL++++ F+ HR+ ++ RR Sbjct: 308 VKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIERRI 367 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F+LRKA+++AH+LE L +AL NID +I++I+ + +A+ LV+N Sbjct: 368 EFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSN------------- 414 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 FG L+E QA ++LD+RLQKLT LE KL +E LL I Sbjct: 415 --------------FG-------LSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIK 453 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS--ADINLEDLITQEDVVVTLS 544 + IL + R++ +IREE + +FGD+RRT+I + ++ DL+ +E++VV L+ Sbjct: 454 DYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLT 513 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 +G++K +EY+ Q GGKG S+ + + D I L NTHD++ S+ G++Y + Sbjct: 514 KKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINA 573 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++ +++R ++G+ I L+ L E I I + + + + TA+G + + T+F Sbjct: 574 YEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFK 633 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +++ G + IKL D D + ++ +++V+ S +G F VR T GV G+ Sbjct: 634 AVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM 693 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN-GLV 783 +L EGD V ++ + + +L ++NGYGKR +++ R G S K +++ G V Sbjct: 694 KLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSV 753 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGV 822 V A+ V + D+I++++ +RT ++S G++ +G+ Sbjct: 754 VDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGI 792 >UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C6CYI7_PAESJ Length = 817 Score = 614 bits (1583), Expect = e-174, Method: Compositional matrix adjust. Identities = 340/832 (40%), Positives = 507/832 (60%), Gaps = 48/832 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + P +EE + + Y+ +I RA+PDVRDGLKPV RR+LYAM N +K Y Sbjct: 3 MLEQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPY 62 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VGDV+G YHPHGDS++Y+ +VRMAQP+ + ++L+DG GN+GS+D D AAAMRYT Sbjct: 63 RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYT 122 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ IA E++ D++K TV F DN+D T K P V+P++ PNLLVNG+SGI+ G AT IP Sbjct: 123 EARLSPIAMEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIP 182 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PH+L E I+ C+A + ++++E LM + GPDFPT II G GI EAY TG+G++YIR Sbjct: 183 PHSLRETIDACIAVMARPEMTVEELMGIVKGPDFPTGGIIMGEEGIREAYTTGKGRIYIR 242 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 ++ E+E D + GR+ I + EIPYQV K+RL+ + + EK+VEGIS +RDES ++G+RI Sbjct: 243 SKVEIE-DVRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRI 301 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+E+K++A +L L +T LQV++ NMVA+ + P+ + +K I+ A++ H++EVVT Sbjct: 302 VVELKKEADANGILAYLLKKTDLQVTYNFNMVAIVNKAPQQLGIKQILNAYINHQKEVVT 361 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RT +EL KA +RAH++E L AL +D +I I+ + A+A+ LVA Sbjct: 362 HRTQYELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAK---------- 411 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 Y +E+QA AIL L+L +LT LE L E+KE Sbjct: 412 ------------------------YGFSERQADAILTLQLYRLTNLEITSLEKEWKETQK 447 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 +IA L IL S +L+ VI++EL +RE++G RR+ I + +NLE ++ EDV+V Sbjct: 448 KIAYLRSILESEKKLLGVIKDELTEIREKYGIDRRSSIRGEVEELKVNLEVMVQSEDVIV 507 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 TLS +GY+K + + R GG ++A +KE D I + NT D++L F+ +G+ Y Sbjct: 508 TLSEEGYMKRTSMLSF--TRSGGDLQTAG-VKEGDAISSVYEVNTIDNLLLFTRKGQYYM 564 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTVL 660 + V+Q+PE G +VN++P+ +D+ I AI+PV +F G + T VK+T L Sbjct: 565 LPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAIIPVKDFNLPGASLVFVTKRAQVKRTEL 624 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E+ R+ A K+ +GDE+I V L+ G +++L S G +RF E V AMG G Sbjct: 625 KEYMTTRSTAIAAAKVAEGDEVIRVTLSEGTKQLLLVSKLGMSIRFSEQEVNAMGRVAAG 684 Query: 721 VRGIRLGEGDKVVSL-IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE- 778 VRG++L E D++++ V +G +L T GY KRT + +YP + R KGV + + E Sbjct: 685 VRGMQLREDDELIAAEWVADDEGEVLVVTDLGYAKRTLLLDYPLQGRGGKGVQTFEFKEG 744 Query: 779 ----RNG-LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILI 825 NG +V A+ + I+ +T G + + I R + G IL+ Sbjct: 745 KRVKPNGSALVAALYCKEELGIIALTSQGAQLAASSEKAPIEDRKSIGRILL 796 >UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ27_9GAMM Length = 823 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 343/838 (40%), Positives = 508/838 (60%), Gaps = 47/838 (5%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 ++SS+ DYAMSVI RALPD RDGLKPVHRR+LY+M+ LG A+KKSARVVGDV+GK Sbjct: 24 MRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHKKSARVVGDVLGK 83 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 136 YHPHGDSA YD+ VRMAQ +++R+ L+DGQGNFGSIDGD+AAAMRYTE+RL+K+ L A Sbjct: 84 YHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDGDNAAAMRYTEMRLSKLGTRLFA 143 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 D++K TVDF DN+DGTE+ P+V+P PNLLVNGS GIAVGMAT++PPHNL E + LA Sbjct: 144 DIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVPPHNLRETADAFLA 203 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 ++D+ +I+ + +H+PGPDFPT I++ G +A TGRG V +R++ VE D G Sbjct: 204 WLDNPEITTREIAQHMPGPDFPTGGILHDLDGYIQALDTGRGAVKLRSQWTVE-DRPRGG 262 Query: 257 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVV 316 +++ +IPY VNKA+L+E+IAELV+EK++EG++ LRDES+K G+RIV+E+KR+ E + Sbjct: 263 SRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKGIRIVLEIKREFEAEAI 322 Query: 317 LNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDR 376 L + TQL+ S N++AL P + ++D+ F HR EV+ RRT F+L +A DR Sbjct: 323 AFQLVTMTQLETSVRYNIMALVGQTPMQLGVRDLFEHFRAHRIEVIQRRTQFDLDRALDR 382 Query: 377 AHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEW 436 HILE L +AL +D I IR + EA+ L+ Sbjct: 383 LHILEGLLMALDRLDETIATIRASADADEARGGLI------------------------- 417 Query: 437 LEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSAD 496 L + QAQAILD++LQKLTGL+ + + DE+ L ++A+L IL ++ Sbjct: 418 ---------DLLGIDVTQAQAILDMKLQKLTGLQIQDIRDEHDRLTAEVADLRDILARSE 468 Query: 497 RLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSE 556 R +E++R EL + +Q ++R TEI + + ++ DLI +EDV++ + QGY+K + Sbjct: 469 RQVEIMRTELLDLCDQHANERCTEIDTSLSKVSAADLIPEEDVMLIGTQQGYLKRIAAKD 528 Query: 557 YEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 616 Q RG KG+S + E+D + ++HD ++ + G+V+++K Y +P+ G +G Sbjct: 529 MNRQNRGTKGRSIMSVGEDDLVTTFHAGHSHDTLIALTDSGQVHAIKAYDIPDTGLGNKG 588 Query: 617 RPIVNLLPLEQDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEF-NRLRTAGKVAI 674 R N+ + + A+L V E + + TA G VK+T L+ + N R G I Sbjct: 589 RHYRNVFE-GVEGNVVAMLTVDGLESVTHSLVIFTAQGLVKRTPLSAYSNATRRGGIQGI 647 Query: 675 KLVDGDELIGVDLTSGE--DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKV 732 LV+GD ++ ++ E + V++ + K +RF RA+G + GVR + L E +V Sbjct: 648 SLVEGDSIVCARVSKDEPNESVIVAADNAKAIRFGMEEARAIGRTSRGVRAMNLSEDARV 707 Query: 733 VSLIVPRGD----GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQ 788 V+ + D ++ ++ G GK T +E+ +SR KGV S +R+G VV A Sbjct: 708 VAGDIIHADDLEKAHLMVVSEKGLGKATPASEFRLQSRGGKGVTSYTPNKRSGPVVAATV 767 Query: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 + + +++ D G R S++ GR T G +IR NV+ V PV+E+ Sbjct: 768 LFEGADVVLFNDQGGANRIAGSDVPHNGRATTGSAIIRNGSVRNVLA---VPPPVEED 822 >UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC7F Length = 819 Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust. Identities = 353/843 (41%), Positives = 524/843 (62%), Gaps = 48/843 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L+ + P +EE + + Y+ +I RA+PDVRDGLKPV RR+LYAM GN +K Y Sbjct: 3 LSEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPY 62 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VGDV+G YHPHGDS++Y+ +VRMAQP+ + ++LVDG GN+GS D D AAAMRYT Sbjct: 63 RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYT 122 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ IA EL+ D+EK TV F DN+D T K P V+P++ PNLLVNG+SGI+ G AT IP Sbjct: 123 EARLSPIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIP 182 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EVI+ C+A + +I ++ +M I GPDFPT II G GI +AYRTG+G+VY+R Sbjct: 183 PHNLREVIDACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLR 242 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 ++ +E + G++ I++ EIPYQV K+RL+ + + EK+VEGI+ +RDES ++G+RI Sbjct: 243 SKTVIE-SLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRI 301 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+E+K+DA +L L+ +T LQ+++ NMVA+ + P+ + LK +++A++ H+REVVT Sbjct: 302 VVELKKDADANGILAYLFKKTDLQITYNFNMVAIVNKTPQQLGLKAMLSAYIDHQREVVT 361 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RT FEL KA DRAH+LE L AL +D +I I+ + +A+ L Sbjct: 362 HRTQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL------------- 408 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 +W+ FG TE+QA +IL L+L +LT LE L E EL Sbjct: 409 -----------QWM---FG-------FTERQADSILTLQLYRLTNLEIHSLQKELDELTK 447 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI--NLEDLITQEDVVV 541 +I L IL S +L+ VIR+EL +RE++G RR+ I +I NLE L+ EDV+V Sbjct: 448 KIEGLRAILDSDKKLIGVIRKELIEIREKYGIDRRSVIQEEVEEIKVNLEVLVNAEDVLV 507 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 TLS++GY+K + + R GG+ +S+ +KE D+I RL NT +++L F+SRG+ + Sbjct: 508 TLSNEGYIKRTSMLSF--TRSGGELESSG-VKEGDYITRLFEVNTLENLLIFTSRGQYFL 564 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE-GVKVFMATANGTVKKTVL 660 + V+Q+PE G IVN++ + +++ I +++PV+ F+E G + + G VK+T L Sbjct: 565 LPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEAGKSLVFVSRKGQVKRTDL 624 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E+ R+ A K+ D +I V ++ +++L S EG +RF E V AMG + G Sbjct: 625 KEYVTKRSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMSIRFNEQEVNAMGRVSGG 684 Query: 721 VRGIRLGEGDKVV-SLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE- 778 VRGI+L +GD+VV +L V +G ILT T GYGKR+ + +YP +SR KG+ + + E Sbjct: 685 VRGIQLRDGDEVVAALWVENDEGEILTITDLGYGKRSLLLDYPAQSRGGKGMATFEFKEG 744 Query: 779 ----RNG-LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 NG +VGA + QI ++ G ++ I+ R + G +L ++ + Sbjct: 745 KRVKPNGSAIVGAFYCREPLQINAYSEDGQAFPIHTEKVPIMERKSIGKLLADVGKNGQI 804 Query: 834 VGL 836 V L Sbjct: 805 VDL 807 >UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M119_ACIFD Length = 816 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 363/838 (43%), Positives = 511/838 (60%), Gaps = 36/838 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 A + + ++EE++ S+L+Y++SVI+ RALPD RDGLKPVHRR+LY+M G ++ + Sbjct: 9 ASNVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHV 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA-AAMRYT 123 K A+VVGDV+ ++HPHGD+A+YD +VRMAQ FSL + L+DG GNFGS D + AA RYT Sbjct: 69 KCAKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYT 128 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RLA IA EL+A ++++TVDFV NYD P V+P + PNLLVNGS GIAVGMAT IP Sbjct: 129 ECRLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIP 188 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 HNL EV++ ID + +++ LM +PGPDFPT II GR GI +AYRTGRG V +R Sbjct: 189 SHNLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIILGRDGIRDAYRTGRGSVKLR 248 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 A A +E +A++G + I+V EIP+Q + + +KI LV+EK +EGI +++ S R Sbjct: 249 AVATIE-EARSGYQ-IVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFSAGSETRF 306 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 VIE+KRDA VVLNNLY T LQ SF I M+AL G P+ +NL + +V H+REV+ Sbjct: 307 VIELKRDANPNVVLNNLYRLTPLQTSFPIQMLALVDGAPRTLNLLGLCQIYVDHQREVIR 366 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ F L KAR+R HI+E L + +D +I IR + A A+ AL+A P Sbjct: 367 RRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEP--------- 417 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 FG +E QA ILD+ L +LT L E+L +E L Sbjct: 418 -----------------FG-------FSELQANHILDMTLGRLTRLGREELEEEAATLRA 453 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 IAEL IL A RL V+++E+ ++ RRT + D EDLI E +VV + Sbjct: 454 TIAELEAILADAQRLSAVVKDEMLAATAEYRQARRTRFEVDPGDFAAEDLIEDEPIVVLI 513 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S GY+K P S ++AQ RGG+G AR+K+ED I ++ ++ +L FSSRGRVY ++ Sbjct: 514 SRSGYIKAVPESSFKAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLR 573 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 Y+LP+ R ARG +VNL+PL DERIT+++ +F E + T NG VK+T + E+ Sbjct: 574 GYELPKLERSARGTALVNLVPLADDERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEY 633 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 R R G +AI + DEL+ V + + E + ++F+ G+V+RF + VR G T GVR Sbjct: 634 ARSRRDGIIAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVRRTGRATAGVRS 693 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 IR +GD +V+ + +L T GYGKRT + +P R G+ I +TER G + Sbjct: 694 IRRADGDWIVAGGLIEDGVEVLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERKGEL 753 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 V A V D++++++ G ++R R+ +IS GR GV LI +E+V + V E Sbjct: 754 VAAAFVRPEDEVLIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVPE 811 >UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y5U7_PHATR Length = 818 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 343/839 (40%), Positives = 488/839 (58%), Gaps = 62/839 (7%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 + YA+S+I+GRA+PD RDGLKPVHRR+LYAM+ L N ++K ARVVG+V+GK+HPHG Sbjct: 1 MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH-ELMADLEK 140 D AVYD +VR+AQ FS Y L+DG GNFGSID D AAAMRYTE RL K++ L+ DL+ Sbjct: 61 DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD 200 +TVDF+ N+DG E P V+P K+P LL+NGSSGIAVGMATNIPPHNL E++ C A + Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180 Query: 201 ED----ISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 ++ + L++ +PGPDFPT A I G E+ Y TG G + +RA ++E TGR Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASILSTGGTEKLYTTGNGGIVMRAVTKIE-KITTGR 239 Query: 257 ET------IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 ++ IIV E+PYQVNKA L+EKIA LV EK+++GI+ LRDESD+DG+R+VIE+KRD Sbjct: 240 KSSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRD 299 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQ--------PKIMNLKDIIAAFVRHRREVV 362 AV VVLNNLY +T LQ +F N +AL P+ L+ + F+ R E + Sbjct: 300 AVAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETI 359 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 R++ F+L K R+HI+ L +AL +D +I+++R Sbjct: 360 RRKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRA----------------------- 396 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + D A E L E G + +Q AIL L+L +LT L KL E +L Sbjct: 397 ----SADQQAAREALYIELGT-------SSEQTDAILKLQLGQLTRLNKGKLESEKADLE 445 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA-NSADINLEDLITQEDVVV 541 + L +L D + +V+REE + ++FG +R++ I + D DLI V+ Sbjct: 446 ESRESLTHLLEVDDAVYDVMREEFIDMMKRFGGERKSSIIVEDDGDFCDMDLIENSRSVI 505 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDF---IDRLLVANTHDHILCFSSRGR 598 ++ GY+K PL +E+Q RG +GK E + N HD +L + G Sbjct: 506 VVTRGGYIKRMPLKTFESQGRGTRGKRGTSDGGESADSEVAHCFTCNDHDTLLMVTQNGI 565 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 Y ++ YQ+P A R A+G+PI ++LP+ DE ITAILPV+EF + V + T G +K+T Sbjct: 566 AYGLRAYQVPIAGRTAKGQPIPSVLPVRGDEVITAILPVSEFSDEEYVVLTTEQGWIKRT 625 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 L F +L + G L DGD L ED++++ + G RF + +R G + Sbjct: 626 PLDAFEKLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTVGGMATRFGAAKLRPTGRTS 685 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGA--ILTATQNGYGKRTAVAEYPTKSRATKGVISIKV 776 GVR ++L EGD + + V G ILT T GYGKR A +E+ ++R GVI+IK Sbjct: 686 RGVRAMKLREGDTIADMNVLSGKNKEYILTVTAQGYGKRIATSEFRAQARGGVGVIAIKF 745 Query: 777 T--ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 + V V D ++I++IT G +VR + S+I GR+ GV++ R + +++ Sbjct: 746 KRGQEEDKVSCLRIVKDDEEILVITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHI 804 >UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI1_9ZZZZ Length = 898 Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust. Identities = 353/929 (37%), Positives = 532/929 (57%), Gaps = 111/929 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A + +I +E++ SY++YAMSVI+GRALPDVRDGLKPVHRR+L+ M+ G+ +K Y Sbjct: 1 MAENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGY 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSAR VG+V+GKYHPHGD A+YDT+VRMAQ FSLRY L+DGQGNFGSIDGD AAMRYT Sbjct: 61 SKSARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL +++ ++ D+ K+T+D N+D TE P V+P ++PNLL+NGS GIAVGMAT IP Sbjct: 121 ESRLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIP 180 Query: 184 PHNLTEVI-------------NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIE 230 PHNL EV N + + I ME++ GPDFPT A I+G GI Sbjct: 181 PHNLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATIHGVDGIL 240 Query: 231 EAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGIS 290 + YRTG G+ IR+ EV+ D++ R ++VH IPYQV KA +++ IAELV++ ++GI Sbjct: 241 DMYRTGNGRFQIRSDVEVQEDSRGKR--LVVHSIPYQVKKAGMLQGIAELVRKDIIKGIR 298 Query: 291 ALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI 350 +RDES K+G+R+VIE+K++A VLN LY ++LQ S+ NM+ + +G+P ++L+ I Sbjct: 299 DIRDESSKEGIRVVIEIKQNADPHAVLNQLYQSSRLQESYSANMMGILNGEPVQLDLRTI 358 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTAL 410 + +VRHR VV RRT FE KA RAHIL L A + IIE+ R + + + + L Sbjct: 359 LHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFEQYL 418 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 D P+ +F +++QA+AI + RL +LT L Sbjct: 419 RG-----------------DEKYPKIRRFDF---------SDKQAKAIAERRLYQLTKLN 452 Query: 471 HEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL 530 +++ DE K+L I + ILGS R + +I EL+ V ++ GD+RR+ I ++ Sbjct: 453 VQEVADELKKLKGAIKDYQNILGSRIRRLNIIISELDEVVDRHGDERRSRIDPMPLSMDR 512 Query: 531 EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHI 590 EDL+ ++ +V++L+ Y+++ P+ + Q RGGKG KEED +++ + D + Sbjct: 513 EDLVAEQAIVISLTRDNYIRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRL 572 Query: 591 LCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVT----EFEEGVK 645 L F+ GRVY ++ ++ P A+R RG I NLL + DE++ +ILP++ E EG Sbjct: 573 LIFTDMGRVYGLRAWETPSASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHY 632 Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDE--LIGVDLTSGEDEVMLFSAEGKV 703 + ATANG +KK+ L+E+ ++ GK A++ G+E L+ V + D V+L S+ G Sbjct: 633 LMFATANGRIKKSRLSEYVKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNA 692 Query: 704 VRFKESS-----------------VRAMGCNTTGVRGIRLGEGDKVVSLIVPRG-DGAIL 745 RF + VR G + GV G++L +GD+V+ +IV D ++L Sbjct: 693 CRFMPAQKKSRVDSNSGETITTHVVRVQGRVSQGVSGMKLRKGDQVIGMIVTDDFDTSVL 752 Query: 746 TATQNGYGKRTAVAE---------------------------YPTKSRATKGVISIKVTE 778 T ++ G KR+ + Y +R T+GV ++ + Sbjct: 753 TISRYGMAKRSRLGSGEMKPVLDDDSMPVLDEDGGLVQQRDGYRRTNRGTRGVRTMSL-- 810 Query: 779 RNG-LVVGAVQVDDC-DQIMMITDAGTLVRTRVSEIS-IVGRNTQGVILI------RTAE 829 R+G +V QV D DQ+ M+T G ++R + +G+ T+G ++ RT Sbjct: 811 RDGDHIVSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTKGTRIMELRNADRTGY 870 Query: 830 DENVVGLQRVAEPVDEEDLDTIDGSAAEG 858 + ++ + R+ D +D S AEG Sbjct: 871 VDEIIFVARLPA-------DLVDSSDAEG 892 >UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4N9_METEA Length = 894 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 354/887 (39%), Positives = 519/887 (58%), Gaps = 73/887 (8%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 + EE++ SYL Y MS + RALPDVRDG+KPVHRR++++M ++ + KSA+VVG Sbjct: 22 SFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSAKVVG 81 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 131 DV+G+YHPHGD+A+YD +VRM Q +SLRY L+D QGNFGSID D AAMRYTE RL ++A Sbjct: 82 DVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMRYTESRLERLA 141 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 L+ADL + VDF NYD + K P V+P + PNLLVNG GIAVGMATNIPPH+L E I Sbjct: 142 GHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHHLGETI 201 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 CL + + ++++ +M +PGPD PT +I+GR GI +A+ TGRG + + A VE + Sbjct: 202 EACLLRLANPAVTLDEIMRVMPGPDLPTGGVIHGRSGIRQAFATGRGAIRVSGVASVE-E 260 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIEVKRD 310 K GR I++ ++PY V KA +EK+AELV+EK++EGIS +RDE SDK G+RIVI+V++D Sbjct: 261 GKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVIDVRKD 320 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 A VVLN L +T + +NM L G+P+ M + ++ FV RREVV RRT+ Sbjct: 321 ADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVRRRTMHR 380 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 L K R+ H L A ID I+ LIR + EA+ AL+A + + +G+ Sbjct: 381 LEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDF---------DTSGE 431 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 A ++P+ V D + L++ Q +AIL++RL +LTGLE +K+ + +EL +I L Sbjct: 432 FAQLLFEVDPDVPVGD-TFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGHL 490 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTLSHQGY 548 IL L V+R ELE ++ F D RRT I ++ D ++ EDL+ +D+VVT++ GY Sbjct: 491 EILNVKAVLDGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVVTVTAGGY 550 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 VK L Y +++ AA ED + +V T +L F++RG ++ ++LP Sbjct: 551 VKRTDLPAYMGRQK------AADEAVEDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLP 604 Query: 609 EATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEFNR 665 EA RGR +VN L L+ +E + AI+ + + E + + T GT+++ ++F R Sbjct: 605 EAAPNVRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFAR 664 Query: 666 LRTAGKVAIKLVDGD-----ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC-NTT 719 + GKVAIKL D + +L+ V L S ED+V L S +G RF + +R M ++ Sbjct: 665 VNKGGKVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDSV 724 Query: 720 GVRGIRLGEGDKVVSLIVPR-------------------------GDGA----------- 743 GV GI LG DKV+S+ V R G+ A Sbjct: 725 GVAGISLGRKDKVISVSVLRHFEATGTEREAYLAGGSARTKDETTGEPATFELPSDRMLA 784 Query: 744 -------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIM 796 IL+ T+NG+ KRT+ Y +R +GV + K+ +R G +V + V++ D ++ Sbjct: 785 MQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADRTGDLVALMPVEEQDVLV 844 Query: 797 MITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV-AEP 842 + TDAG RT +E+ I+ R TQG + +V + ++ AEP Sbjct: 845 ITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSVVKIAAEP 891 >UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicutes RepID=PARC_BACSU Length = 806 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 328/831 (39%), Positives = 494/831 (59%), Gaps = 44/831 (5%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +EE + + Y+ +I RALPD RDGLKPV RR+LYAM+ GN ++K ++K+A+ VG+ Sbjct: 12 LEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGN 71 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 VIG YHPHGDS+VY+ +VRM+Q + +R +L++ GN GSIDGD AAMRYTE RL+ IA Sbjct: 72 VIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIAS 131 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 EL+ D++K TV+FV N+D T K P V+P PNLLVNGS+GI+ G AT+IPPH+L EVI+ Sbjct: 132 ELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVID 191 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 + I S++ LME I GPDFPT II G GI +AY TG+GK+ IR +AE+E Sbjct: 192 AVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIET-I 250 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 + GRE I++ EIP++VNKA L++K+ E +K+VEGIS +RDE+D+ G+R+VIE+K++A Sbjct: 251 RGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEAD 310 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 + +LN LY T LQ+++ NMVA+H+ +P +M+L I+ A++ H++EVVT R+++EL+K Sbjct: 311 AKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQK 370 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 A+DR HI+E L AL+ +D +I IR + +AK L+A Sbjct: 371 AKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK------------------- 411 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 Y TE QA+AI+ L+L +LT + L +E +EL +I EL IL Sbjct: 412 ---------------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESIL 456 Query: 493 GSADRLMEVIREELELVREQFGDKRRT--EITANSADINLEDLITQEDVVVTLSHQGYVK 550 + +L++VI L+ +++++ D RR+ E INLE ++ EDV VT++ GY+K Sbjct: 457 SNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLK 516 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 + A G +K+ D + NT D +L F+++G V+QLP+ Sbjct: 517 RTSQRSFAASNGQDFG-----MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDI 571 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR-TA 669 G+ NL+ +++DE I +P+ EF+ + T NG VKKT LT + R + Sbjct: 572 RWKDMGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQRYSK 631 Query: 670 GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 VA+ L DELI V +T+GE ++ + + G + F E V +G GV+GI L E Sbjct: 632 ALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKED 691 Query: 730 DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV 789 D VVS + + +I+ TQ G KR +++E+ SRA +GV+ ++ ++N V A+ Sbjct: 692 DFVVSGEILQQSDSIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVALFA 751 Query: 790 DDCDQIMMI-TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 +Q +M T+ G + E+ R + G E V + R+ Sbjct: 752 CGLEQRLMAETEKGDRKELQTKELRTNDRYSNGSFFFDEEESGKVTAVWRL 802 >UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms RepID=GYRA_MYCLE Length = 1273 Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust. Identities = 310/726 (42%), Positives = 457/726 (62%), Gaps = 42/726 (5%) Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL +A E++ ++++ETVDF+ NYDG + P V+P++ PNLL NGS GIAVGMATNI Sbjct: 551 TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610 Query: 183 PPHNLTEVING---CLAYID-DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG 238 PPHNL E+ + CL D DE+ + +ME + GPDFPTA +I G +GI +AY+TGRG Sbjct: 611 PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SD 297 + IR EVE D++ GR ++++ E+PYQVN I IAE V+ R+ GIS + D+ SD Sbjct: 671 SIRIRGVVEVEEDSR-GRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 + G+RIVIE+KRDAV +VVLNNLY TQLQ SFG NM+++ G P+ + L +I +V H Sbjct: 730 RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEH 789 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 + +V+ RRT + LRKA +RAHIL L AL +D +I LIR + T A+ +V Sbjct: 790 QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVV------ 843 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 E L+ + + QAQAILD++L++L LE ++++D+ Sbjct: 844 -----------------ELLD-----------IDDIQAQAILDMQLRRLAALERQRIIDD 875 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 ++ +IA+L IL +R +IR EL + E++GD RRT I A D+N EDLI +E Sbjct: 876 LAKIEVEIADLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIARE 935 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 +VVVT++ GY K Y +Q+RGGKG A +K++D + V +THD IL F+++G Sbjct: 936 EVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQG 995 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 RVY K Y+LPEA+R ARG+ + NLL + +ERI ++ + +E+ + +AT G VKK Sbjct: 996 RVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRAGLVKK 1055 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK--ESSVRAMG 715 + LT+F+ R+ G VAI L D DEL+G L + + +++L SA G+ +RF + ++R MG Sbjct: 1056 SKLTDFDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMG 1115 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 T+GV+G+R D+++SL V R D +L AT GY KRT++ EYP + R KGV+++ Sbjct: 1116 RATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVM 1175 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 R G +VGA+ VD+ ++ IT G ++RT ++ GR T+GV L+ E + ++ Sbjct: 1176 YDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLA 1235 Query: 836 LQRVAE 841 + R AE Sbjct: 1236 IARNAE 1241 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 77/118 (65%), Positives = 97/118 (82%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + PV+I++E++ SY+DYAMSVIVGRALP+VRDGLKPVHRRVLYAM G ++++ K Sbjct: 14 QRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAK 73 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 SAR V + +G YHPHGD+++YDT+VRMAQP+SLRY LVDGQGNFGS D AAMRY Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYC 131 >UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZG6_BACS4 Length = 834 Score = 570 bits (1469), Expect = e-161, Method: Compositional matrix adjust. Identities = 331/854 (38%), Positives = 496/854 (58%), Gaps = 66/854 (7%) Query: 24 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 83 Y+ +I RALPD RDGLKPV RR+LYAM N +K ++K+A+ VG+VIG YHPHGDS Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFRKAAKTVGNVIGNYHPHGDS 82 Query: 84 AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 143 +VYD ++R +Q + +R++LV GN GSIDGD AAMRYTE RL+ I+ EL+ D+EK+TV Sbjct: 83 SVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRYTEARLSAISAELLKDIEKDTV 142 Query: 144 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 203 DF+ N+D + + P V+P++ PNLLVNGS+GI+ G AT+IPPH+L EVI+ + +++ D Sbjct: 143 DFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIPPHHLGEVIDAAIHHMEHPDS 202 Query: 204 SIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHE 263 +++ LM+HI GPDFPT I G G+++AY TG+GK+ +R +AE+E D + G++ I++ E Sbjct: 203 TVDDLMKHIKGPDFPTGGTIQGVDGLKKAYETGKGKIVLRGKAEIE-DVRGGKQQIVITE 261 Query: 264 IPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQ 323 IPY+VNKA L++++ EL +K+V+GI+ +RD++D+ G+RIV+E+K++A + +L+ LY Sbjct: 262 IPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRIVVELKKEADSKGILHYLYKN 321 Query: 324 TQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEAL 383 T LQVS+ NMVA+ + PK++ LK ++ A++ H++EVVTRRT F+L KA++RAHI+E L Sbjct: 322 TDLQVSYNFNMVAIFNKTPKLLGLKHMLEAYINHQKEVVTRRTKFDLNKAKERAHIVEGL 381 Query: 384 AVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGV 443 A++ +D +I+ IR + +AK L Sbjct: 382 IKAISILDEVIQTIRASKDKKDAKDRL--------------------------------- 408 Query: 444 RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 503 +Y TE QA+AI+ L+L +LT + L +E EL I +L IL S L+ I+ Sbjct: 409 -QDMYQFTEPQAEAIVTLQLYRLTNTDVTTLEEEASELKKLIEKLEAILSSEKNLINEIK 467 Query: 504 EELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQR 561 EL+ +++++ + RRT I D INLE +I EDV VT++ +GYVK L Y A Sbjct: 468 RELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYVKRSSLRSYAASN 527 Query: 562 RGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVN 621 G +KE D + L NT D +L F+ +G + V+QLPE G+ + N Sbjct: 528 GEPPG-----MKETDRLLYSLEINTTDTLLLFTRKGSFLFLPVHQLPEIRWKDSGQHVAN 582 Query: 622 LLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV-AIKLVDGD 680 L+ ++ D+ I +PV EF + V AT G VKKTVL+E+ R + + A+KL D Sbjct: 583 LVAMDNDDDILTAIPVKEFNDSEYVLFATKLGMVKKTVLSEYKAQRNSKALMAVKLKKDD 642 Query: 681 ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG 740 E+I V L+ G ++ + G + F E V A G T GV+ I L + D VVS + + Sbjct: 643 EVISVTLSDGTHDIFFATHTGYGLWFTEEEVSATGQRTAGVKAINLKKDDFVVSCMSFKE 702 Query: 741 DGA--ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN-GLVVGAVQVDDCDQIMM 797 + + TQ K+ + + SRA +G++ +K +R V + + I + Sbjct: 703 ESPPDLFLVTQRAAYKKMKLNVFEKTSRAKRGLVMLKELKRYPHRVASLLPITKYGSIFV 762 Query: 798 ITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE 857 T G V+ I R T G L T + V ID E Sbjct: 763 QTKNGNTDTIEVASIRSNDRYTNGSFLFDTGDTGEV-----------------IDVWFEE 805 Query: 858 GDDEIAPEVDVDDE 871 GD AP D+DDE Sbjct: 806 GD---APNTDLDDE 816 >UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae RepID=D2REE0_ARCPR Length = 738 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 339/819 (41%), Positives = 479/819 (58%), Gaps = 99/819 (12%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 E+ +I EELK +YLDYAMSVIVGRALPDVRDGLKPV RR+LYAM +G +K + K Sbjct: 3 EVLIRDIAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKC 62 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVG V+G YHPHGD+ VY+ +VRMAQ FS+RY L+DGQGNFGSIDGD AAMRYTE R Sbjct: 63 ARVVGHVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECR 122 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L +IA +++ D++K TVDF N+D +++ P V+P KIPNLL+NG +GIAVGM TNIPPHN Sbjct: 123 LTEIAEKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHN 182 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 + EV +G +AYI + +ISIE LM I GPDFPT +I GR GI EAYRTG+GK+ +R + Sbjct: 183 IREVCDGIIAYIKNPNISIEELMNFIKGPDFPTGGVIVGRDGIIEAYRTGKGKIILRGKV 242 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 +VE D II+ EIPY VNKA+L+EKIA+L+K+ ++ +RDESD++G+R+VIE Sbjct: 243 DVEED------KIIIREIPYMVNKAKLVEKIADLIKKDKLLA-KTVRDESDREGIRVVIE 295 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K D L LY T L+V+F + M+AL + +PK++NLK++IA +V HRREVV R+ Sbjct: 296 LKEDPYS--ALKKLYDHTPLKVTFNVVMLALVNNEPKLLNLKELIAHYVNHRREVVRRKA 353 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 +EL+KA +R HI+E L A+ +D +I LI+ + + AK L+ Sbjct: 354 EYELKKAEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMK-------------- 399 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 L +TE+QA+AIL LRLQ LT LE+E L+ E+ EL +I Sbjct: 400 --------------------LLRITEKQAEAILQLRLQMLTRLEYESLMKEFNELKGRID 439 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 EL IL R+ E+I EEL V+ +FGD RRTEI L++++ + V VTL Q Sbjct: 440 ELKSILADPKRVDEIIVEELREVKRKFGDNRRTEIIDKEI---LKEVVEEFGVAVTLDGQ 496 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 + +E G +S +I LL A ++ IL FSS + YS+ Sbjct: 497 -------IKRFEI---GKALRSNPKI--------LLRAMSNLDILLFSS-DKAYSIHARD 537 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGV----KVFMATANGTVKKTVLTE 662 +P ++ PL + + + E GV V + + +G +KK L E Sbjct: 538 IP-----------LDFTPL------SKFISAEKVETGVVAKGDVVILSKDGNIKKVRLEE 580 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 F + AG +A E IG + +V++ + G +VRF+ S + G + GV+ Sbjct: 581 FANAKRAGIIA------GENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEYGRSAKGVK 634 Query: 723 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 I L EGD++ + + +GD +L T++GY K+ + E+ +R GV ++ Sbjct: 635 AITLREGDEIAWMSIGKGD-YVLILTRDGYAKKVPIDEFRLTNRGAMGVRGVRGE----- 688 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQG 821 + ++ ++ T G VR V I R +G Sbjct: 689 -IAVAEIVSEEEYYAYTSEGNAVRINVKRIPKGDRYKKG 726 >UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EGN9_9CHLO Length = 963 Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust. Identities = 330/876 (37%), Positives = 499/876 (56%), Gaps = 85/876 (9%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I + + E SYL YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG D K +KK A Sbjct: 109 IVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFKKCA 168 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVG+V+GK+HPHGD +VYD +VRMAQ FS+ LVDG GNFGS+D D AAMRYTE RL Sbjct: 169 RVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYTECRL 228 Query: 128 AKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A L+AD+ + VDF + +DG++ P V+P ++PNLL+NGS+GIAVGMAT+IPPHN Sbjct: 229 KPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSIPPHN 288 Query: 187 LTEVINGCLAYIDD-EDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRA 244 L EV N + + D E ++E L+E +P PDFPT II R G +E YRTG+G V +R Sbjct: 289 LREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGVNLRG 348 Query: 245 RAEVEVDAKTG-----RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 A VE + G R+ +++ IPYQ NKA L E+IA+LV + +EG+S +RDESD+D Sbjct: 349 AATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDESDRD 408 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMR+V+E++R A VL+ LY++T+LQ +N+V L +PK+++L +I+ F+ R Sbjct: 409 GMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLVGREPKVLSLMEIMREFLAFRC 468 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 + V RR EL+KA R H++E A D ++ IR A A+ AL P Sbjct: 469 DAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKP----- 523 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 ++L+E+QA+A+L + L++LTGLEH+KL E Sbjct: 524 ----------------------------FWLSEKQAEAVLAMPLRRLTGLEHDKLKTEEA 555 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRT------EITANSADINLEDL 533 EL ++ +L +LG R++ + E + +R+ FG RRT +I A ++ L D+ Sbjct: 556 ELTARVEDLTGLLGDRSRVIATVAREAKELRDTFGVDRRTDIDTDAQIHAKKMNVTL-DM 614 Query: 534 ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF 593 + +V+ ++++GY+K + + Q R +G++ +++ D + ++ N D +L F Sbjct: 615 LNSPSLVI-MTNRGYIKRIDPAVFSKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLFF 673 Query: 594 SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV-----TEFEEGVKVFM 648 + RGRV++++ + +P+A+ A G P +L L + E ITA+LPV E + Sbjct: 674 TDRGRVHAVRAFNIPQASTSALGTPFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLCF 733 Query: 649 ATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE 708 TA G +K+T +EF +R GK A+ L GD L VD+ D +++ +G V+ F Sbjct: 734 VTARGLIKRTCASEFVGIRNNGKKALVLRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFDA 793 Query: 709 SSVRAMGCNTTGVR-------GIRLGEGDKVVSLIVPRGDGA------------------ 743 SVRA G GV+ G+ D S +P A Sbjct: 794 DSVRAQGRAAAGVKAMAFKPDGLDDTSEDDDTSEALPANASAGDVEDDSEEDGEDEDAKG 853 Query: 744 --ILTATQNGYGKRTAVAEYPTKSRA---TKGVISIKVTERNGLVVGAVQVDDCDQIMMI 798 + + +G GKR +VA++ +SRA KG+ +K ++ L + + D+ + +++ Sbjct: 854 PMLFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGSKLAALCLTGLDSDEHEHVIIG 913 Query: 799 TDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDENV 833 + G + R V+ I GR +GV +++ ++ + V Sbjct: 914 SQGGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTV 949 >UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chroococcales RepID=Q2JQA2_SYNJB Length = 819 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 322/835 (38%), Positives = 482/835 (57%), Gaps = 61/835 (7%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 +++ E++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG ++ Y+K ARVVG Sbjct: 5 DLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVG 64 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 131 DV+GKYHPHGD AVYD +VRM Q FS RY LV G GNFGS+D D AAMRYTE RLA+++ Sbjct: 65 DVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAELS 124 Query: 132 HE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 H L+ + +E VDF+ N+DG++ P V+P ++P LL+NGSSGIAVGMATNIPPHNL EV Sbjct: 125 HTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGEV 184 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV-E 249 ++G LA ID D+S E L+ IPGPDFPT I +GI AY TGRG + +R A E Sbjct: 185 VDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQGIRAAYLTGRGSITLRGVARFEE 244 Query: 250 VDAKTGRE---TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 + GR +++ E PYQVNKA IEK+AEL + R+ GI+ LRDESD+ G+R+V+E Sbjct: 245 IQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVVVE 304 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KR+A + VL LY T LQ +FG ++AL +G+P+ ++LK+I+ F++ R + R Sbjct: 305 LKREANPQAVLQQLYKLTPLQSNFGAILLALVNGEPRQLSLKEILQHFLQFREATLNRMF 364 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 EL++ + +A + + +ALA+++ +IEL+R AP AK A + R Sbjct: 365 RAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAK-------------AQLQTR 411 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 G T QQA+ IL + L++LTGLE E+L E+ +L +I Sbjct: 412 LG---------------------CTPQQAETILAMPLRRLTGLERERLHQEHAQLQTRIE 450 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS------ADINLEDLITQEDVV 540 EL +L +L+ +++EL +++ FGD RRT+I + S A I + + + Sbjct: 451 ELQGLLSDRRKLLNYLKKELRHLKKTFGDPRRTQILSASELEAEVAQIPSGEETEETHFL 510 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 + + +GYV+ PL R + A R ED + L IL ++ G+ + Sbjct: 511 LQFTRKGYVRRLPLPS-----RRSRSNPAQRELGEDVLVGLECVTLEQEILVLTAGGKAF 565 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++ + +P +T +RG P+V LLP E I A + + + + G +K+ L Sbjct: 566 TLPIAGIPLSTGSSRGVPLVTLLP--NPEPIVATFTLDPDPGKASLVVLSRQGRIKRLAL 623 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVRFKESSVRAMGCN 717 E L G +KL +GDEL L + + V+L ++ G+V+R + MG Sbjct: 624 AELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPLMGRA 683 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 G +RLG +++V + + G ++ A++ GY KR ++ E P R G + + Sbjct: 684 AMGSPALRLGRTERIVGMALVPSQGILVLASRLGYLKRLSLEEIPILERGQVGAPAFHFS 743 Query: 778 ERNGLVVGAVQV------DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 +R ++VG V + Q+ +IT++ + +EI + R+ G +L++ Sbjct: 744 DRGDVLVGLVGLPPELERPSHLQLDVITESEQVYSFSPAEIPLQSRSGGGSLLVK 798 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 24/231 (10%) Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR-----------LRTAGKVAIKL 676 D R T IL +E E V + + T + L +F R R+ A + Sbjct: 479 DPRRTQILSASELEAEVAQ-IPSGEETEETHFLLQFTRKGYVRRLPLPSRRSRSNPAQRE 537 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVV--- 733 + D L+G++ + E E+++ +A GK + + ++ GV + L + + Sbjct: 538 LGEDVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPNPEPIVAT 597 Query: 734 -SLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 +L G +++ ++ G KR A+AE ++ V+ +K G +G + D Sbjct: 598 FTLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLK----EGDELGWAALWDP 653 Query: 793 DQ----IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 D +++ T G ++R V +I ++GR G +R E +VG+ V Sbjct: 654 DHQGYSVVLATSGGRVLRLDVQQIPLMGRAAMGSPALRLGRTERIVGMALV 704 >UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y886_COPPD Length = 758 Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust. Identities = 323/822 (39%), Positives = 489/822 (59%), Gaps = 76/822 (9%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 REIT EELK SY+DYAMSVIVGRALPDVRDGLKPV RR++Y+M+ G+ +N YKK Sbjct: 7 REIT-----EELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKK 61 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VGDV+GKYHPHGD++VYD +VRMAQ F +RY LVDG GNFGS+DGD AAMRYTE+ Sbjct: 62 SARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEV 121 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL +++ L+ DL+K+TV++V N+DG+ K P+V+P P LLVNGSSGIAVG++T IPPH Sbjct: 122 RLTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPH 181 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+I+ L ++ + + + LM + GPDFPT I + + + Y G+G + +R R Sbjct: 182 NLGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQDLVKVYEEGKGVIRVRGR 241 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 A++E + + ++++EIPY VNKA L+ +IA+L++++++ G+ +RDES++ G+R+V+ Sbjct: 242 AKLE-EGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVL 300 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K+ A +LN LY QT L+ SF INMVAL G P + L+D IA+FV R+E + RR Sbjct: 301 ELKKGASFHHILNQLYEQTALENSFAINMVALKDGAPVQLTLRDYIASFVDFRKETILRR 360 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T + L KA R ++E + AL NID +IE+IR+A T +AK L++ Q+G Sbjct: 361 TRYLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMS---QIG------- 410 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 LTE QA+A+L+++L+ L +E EK+ E + LL I Sbjct: 411 ------------------------LTEVQAEAVLEIKLRSLVHMEKEKVEQELESLLKAI 446 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 AE IL S +L+EVI EEL+ V++ F D+RRT I +D E + E+ Sbjct: 447 AEYTEILNSETKLLEVIAEELKHVKKLFADQRRTLI--GFSDQQTETVQAAEETF----- 499 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 + L EY RR S + DFI+ D ++ ++ G+++ + Y Sbjct: 500 -----FIELLEYGIIRR-----SKTQTNLVDFIE----VQGSDPVMFLTNFGKIFCISAY 545 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 ++PE+ RG + L P+ DE++ +L T+ +E + + + G K+ L + + Sbjct: 546 EIPESQRGV---ALNALFPMGNDEKV--LLLGTQNQELIAI---SEKGKGKRFRL-DVEK 596 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 + + G L+D +++ V + E+++ SA+GK +R S+ G T GV+ +R Sbjct: 597 IPSRGGYYF-LLDPGDMVSVIVPVTSKELVVISAQGKALRLDVESIPERGLRTGGVKVMR 655 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 EGD+VV + I+T T+N Y KRT + E P ++R GV K E G V+G Sbjct: 656 TYEGDRVVGATCLK-QKYIVTMTENAYAKRTDIDEIPKRNRGAAGVFIHKANETTGPVIG 714 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 C++ M+ + +S+I + + + G ++RT Sbjct: 715 V----SCNENMLYRSGREWLPLSMSDIPVCSKASMGKKVLRT 752 >UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q98RX7_GUITH Length = 877 Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust. Identities = 302/833 (36%), Positives = 505/833 (60%), Gaps = 48/833 (5%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 ++ E+ SY++YA+SVI GRALPD+RDGLKPVHRR+L+AM L Y+K ARVVG+ Sbjct: 70 LQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEAPYRKCARVVGE 129 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 V+GKYHPHGD+AVYD++VRM+Q FS+R +L+ G GNFGSID D AAMRYTE +L+ ++ Sbjct: 130 VLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMRYTECKLSNLSV 189 Query: 133 E-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 + L+ +L+ +TV++V N+DG+ P +MP+ IP++L+NGSSGIAVGMAT+IPPHNL E++ Sbjct: 190 DTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMATSIPPHNLGEIV 249 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 CLA ID+ +I+ + L++++P PDFPT +I G ++ Y G + +R + VE Sbjct: 250 RSCLALIDNYNITNQELIKYLPCPDFPTGGLIIGNNSCKDLYEKGISSIILRGKINVEFS 309 Query: 252 ---AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK 308 K + +I+ EIP+Q+NK+ LI K+A+LV K ++GIS +RDESD+ G+RIVIE+K Sbjct: 310 KSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESDRKGIRIVIEIK 369 Query: 309 RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 RD ++ + ++ LQ++F M+ + QP ++NLK+I++ F+ RR+++ + F Sbjct: 370 RDYDPIKIVKIILKKSSLQITFSSYMLCIVDKQPILVNLKEILSLFLHFRRKIIRKNIKF 429 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 EL+ + +IL+ ++++L ID IE I+ + EAK L+ Sbjct: 430 ELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILM----------------- 472 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 EFG L+++Q++AIL+L+L++LT LE +K+ ++++ + EL Sbjct: 473 -----------EFG-------LSQEQSEAILNLQLRRLTKLESKKIDNDFEITKSSLNEL 514 Query: 489 LRILGSADRLMEVIREELELVREQFGDKRRTEITANSADIN-LEDLITQEDV-VVTLSHQ 546 IL S + +I+ +++ + E +G R+T + NS + N +E+L T E+ V + Q Sbjct: 515 KCILSSNILIDGIIKNQIKNISEIYGFPRKT-LLINSINENIIEELETIENYESVIMITQ 573 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Y+K L +E+Q RG KGK I + D I N D ++ SS G Y +KV + Sbjct: 574 YYIKKMFLESFESQTRGTKGKRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSR 633 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P + R ++G PI+++L ++ +I++I+ + E + + T G +K+T ++ FN + Sbjct: 634 IPISKRNSKGTPILSILKGLENNQISSIIATSNCETEKFLVLLTQKGLIKRTSISNFNNI 693 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAMGCNTTGVRGI 724 + G + + L + D L V +D V++ + +GK++RF S +++ G + G++ I Sbjct: 694 SSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKSTGRTSKGIKSI 753 Query: 725 RLGEGDKVVSL-IVPRG--DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER-N 780 L D + I+P I+ T+ GYGKR V E + R KG+ I + E N Sbjct: 754 DLDSNDIISDFDIIPSQAITNFIILLTEMGYGKRIKVTELKIQKRGKKGIKVISLRENVN 813 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 ++ + + ++I++ T G +V+ ++S+I++ +N++G+I+ R E + V Sbjct: 814 DYLISSRFCIENEEILISTSYGNVVKQKISDIAVQKKNSKGIIIQRLTEGDKV 866 >UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cyanobacteria RepID=Q2JY71_SYNJA Length = 849 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 327/843 (38%), Positives = 482/843 (57%), Gaps = 69/843 (8%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 +++ E++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG ++ Y+K ARVVG Sbjct: 27 DLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVG 86 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 131 DV+GKYHPHGD AVYD +VRMAQ FS RY LV G GNFGS+D D AAMRYTE RLA+++ Sbjct: 87 DVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAELS 146 Query: 132 H-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 H L+ + + VDF+ N+DG++ P V+P ++P LL+NGS+GIAVGMATNIPPHNL EV Sbjct: 147 HTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHNLGEV 206 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV-E 249 ++G LA ID+ D+S E L+ IPGPDFPT I +GI EAY TGRG + +R A E Sbjct: 207 VDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQGIREAYLTGRGSITLRGVARFEE 266 Query: 250 VDAKTGRE---TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 + GR +I+ E PYQVNKA +EK+AELV + R+ GI+ LRDESD+ GMR+V+E Sbjct: 267 IQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMRVVVE 326 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KR+A + VL LY T LQ +FG+ ++AL G+P+ ++LK I+ F++ R + R Sbjct: 327 LKREANPQAVLQQLYKLTPLQSTFGVILLALVEGKPQQLSLKQILQHFLQFREATLKRMF 386 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 EL++ + +A + + +ALA+++ +I+L+R AP A AK A + R Sbjct: 387 RAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAK-------------AQLQTR 433 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 G T QQA+ IL + L++LT LE E+L E EL +IA Sbjct: 434 LG---------------------CTSQQAETILAMPLRRLTTLERERLYQEQAELQARIA 472 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRT------EITANSADINLEDLITQEDVV 540 EL +L +L+ +++EL +++ F D RRT E+ A +A I + + Sbjct: 473 ELQGLLQDRRKLLNYLKKELRHLKKTFADPRRTQILSASELEAEAAQIPGGEAGEDSRFL 532 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 + L+ +GYV+ PL + + A R ED + L IL ++ GR + Sbjct: 533 LQLTRKGYVRRLPLPGPRS-----RSNPAQRELGEDTLVSLECVTPEQAILVLTASGRAF 587 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV-------TEFEEG-VKVFMATAN 652 ++ + +P +T +RG P+V LLP E I A P+ E G + + + Sbjct: 588 TVPIEGIPLSTGSSRGVPLVTLLP--NPEPIVAAFPLDPVRVSGAEHSPGEASLVVLSRQ 645 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVRFKES 709 G +K+ L E L G +KL +GDEL L + V+L ++ G+V+R Sbjct: 646 GRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLRLDAE 705 Query: 710 SVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK 769 + MG G +RLG +++V + + G ++ A+++GY KR + E P + Sbjct: 706 QIPLMGRAAMGSPALRLGRTEQIVGMALLPPQGILVLASRSGYLKRLPLGEIPILEQGKV 765 Query: 770 GVISIKVTERNGLVVGAV------QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVI 823 GV + + + +VG V Q+ +I ++ + EI + GR+ G + Sbjct: 766 GVSAFHFSNKGDGLVGLVGFPPDLAAHPHLQVDVIAESERVHSFSPEEIPLQGRSGGGSL 825 Query: 824 LIR 826 L++ Sbjct: 826 LVK 828 >UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVW0_9AQUI Length = 781 Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust. Identities = 323/756 (42%), Positives = 458/756 (60%), Gaps = 70/756 (9%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 +K SY+DYAMSVIVGRA+PDVRDGLKPV RR+LYAM +G K +KKSARVVG+V+GK Sbjct: 12 VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 136 +HPHGD AVYD +VRMAQ FS+RY L+ GQGN+GS+DGD A MRYTE +L+K+A EL+ Sbjct: 72 FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 D++K+TVDF+ N+D + P V+P+K PNLL NG++GIAVG+AT+IPPHNL EV + Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 + ++S E ++E + GPDFPT +I + I+E Y TGRG V ++A+A VE + GR Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVIENYKDIKEIYETGRGIVQVKAKAHVE-KVQGGR 250 Query: 257 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVV 316 E IIV EIPYQVNKA LI+KIA+ V+ R++ IS +RDESDKDG+RIVIE+KR+A GE V Sbjct: 251 EQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKV 310 Query: 317 LNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDR 376 L L+ TQL+ F +N+V L +G+PK++ +K+++ F++HR ++ RRT F L+KA DR Sbjct: 311 LKKLFKYTQLRKGFPVNLVVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKKAEDR 370 Query: 377 AHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEW 436 H+++ L +AL N+D +IE IR + EA+ E Sbjct: 371 LHVVQGLLIALNNLDEVIEGIRRSKDVQEAR---------------------------EM 403 Query: 437 LEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSAD 496 L+ FG LTE+QAQA+LDLRL +LT LE +KL E +LL +I +++GS + Sbjct: 404 LQARFG-------LTERQAQAVLDLRLHRLTSLERDKLRQEEADLLQKIEYYRKVVGSEE 456 Query: 497 RLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSE 556 +++ EE E + ++FGD RRT I I L VV L + + + + E Sbjct: 457 ERIKIFVEETENLVKKFGDPRRTFIEGIEEKIEEGSL-----VVAVLENGKVMPVENMPE 511 Query: 557 YEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 616 E+ +D L V T + + S+RGRVY + Q A +G++ Sbjct: 512 GESP----------------VVDILDVPFT-EGLFLVSNRGRVYWLAGSQ---ALQGSK- 550 Query: 617 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL 676 VN E +E I F + ++ +AT NG +KK L EF + G IKL Sbjct: 551 ---VNF--KESEEYIVGAFIRERFAD--RLLLATRNGMIKKIPLVEFE-YKAQGMRIIKL 602 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI 736 + DE++G+ + ++++F+ GKV RF + A T G +GI++ + D+V Sbjct: 603 AEDDEVVGIAQSIDMSDILMFTRRGKVARFSIREIPAATPGTKGAQGIKVEDNDEVAGAR 662 Query: 737 VPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGV 771 V R D I+ T +G KR E ++R KGV Sbjct: 663 VIREDQPYIIVVTVDGKVKRIYQQEIGVRNRGVKGV 698 >UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobacteria RepID=Q114B8_TRIEI Length = 873 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 327/896 (36%), Positives = 497/896 (55%), Gaps = 100/896 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L+ ++ ++ E++ SYL+YAMSVIVGRALPDVRDG KPVHRR++YAM+ LG ++ + Sbjct: 8 LSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPF 67 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +K ARVVGDV+GKYHPHGD AVYD +VRM Q FS RY L+DG GNFGSID D AAAMRYT Sbjct: 68 RKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAMRYT 127 Query: 124 EIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 E RLA I +E L+ + + VDF +N+DG+++ P V+P ++P LL+NGSSGIAVGMATN+ Sbjct: 128 ESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATNV 187 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL EV++G +A ID+ +IS + L E IPGPDFPT I GI + Y GRG + + Sbjct: 188 PPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVSTDGIIDTYTKGRGSIPM 247 Query: 243 RARAEVE-VDAKTGRET---IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 R A +E V GR T I+V E+P+QVNKA IEK A+LV ++EGI+ LRDESD+ Sbjct: 248 RGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDESDR 307 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 G+R+VIE+KR+A VVL++LY T L FG M+AL +GQP+ ++L+ ++ F+ R Sbjct: 308 SGIRVVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALVNGQPQQLSLRTLLQEFLNFR 367 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 E +TR EL+ A+ R+HI+ L AL +D +I+++R+AP + TA V+ LG Sbjct: 368 EETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAP---DGNTAKVSFQESLG 424 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 L+E QA AIL + +++LTGLE +KL +E+ Sbjct: 425 -------------------------------LSENQADAILAMPMRRLTGLEKQKLEEEH 453 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDL--ITQ 536 ++L+ +I EL +LG +L++ +++EL ++ ++ D RRT I N +D I+Q Sbjct: 454 EQLMGKIQELENLLGDRHQLLKALKKELRTLKRKYNDPRRTRIIDQIKLKNADDFASISQ 513 Query: 537 ------------------------------------------EDVVVTLSHQGYVKYQPL 554 E VV+ SH+GYV+ P Sbjct: 514 QKKYLEAGNKEIDIKTKGRVIKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPA 573 Query: 555 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 614 +E + K EDF ++ A T ++ + G+ Y +KV +P A+ + Sbjct: 574 KGFEKYKIDKKSHITME-NSEDFTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRS 632 Query: 615 ------RGRPIVNLLPLEQDERIT--------AILPVTEFEEGVKVFMATANGTVKKTVL 660 +G P+V LLP + IT + E +E + M T NG +K+ L Sbjct: 633 TIRNENKGVPLVTLLPPSATKEITDARKEIIIGQFILNEAKENKDLIMLTQNGKIKRLCL 692 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK--ESSVRAMGCNT 718 ++ + +R G IKL + DEL V L ++V+L ++ G+++R + + + MG Sbjct: 693 SDLSDMRNRGVTVIKLKEDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAA 752 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 G + RL + +++V + +L +Q+ YGK+ V +R G + T Sbjct: 753 QGSQATRLRKQEELVGCVTLDIGSNLLLVSQHSYGKQIPVTALRVANRGGIGQNVFQFTR 812 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 ++ ++ G V + ++T G + + + ++ G L++ E ++ Sbjct: 813 QDDILAGIVASSSNVLVQVLTTDGRVFGMIADRVKVDQQDDHGHRLLKLGAKEKII 868 >UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyanobacteria RepID=B7KIH9_CYAP7 Length = 848 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 309/876 (35%), Positives = 497/876 (56%), Gaps = 92/876 (10%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I P + +E++ SYL+YAMSVIVGRALPDVRDG+KPVHRR++YAM+ LG ++ Y+K Sbjct: 12 QIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKC 71 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGD AVYD +VRM Q FS RY L+ G GNFGS+D D AAMRYTE R Sbjct: 72 ARVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131 Query: 127 LAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 LA I E ++ ++ + VDF +N+D +++ P V+P ++P LL+NG SGIAVGMATNIPPH Sbjct: 132 LAPIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPH 191 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+++G +A ID + E L E IPGPDFPT I GI+EAYRTG+G + ++ Sbjct: 192 NLGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTEGIKEAYRTGKGIIPVQGV 251 Query: 246 AEVEVDAKTGRE-----TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 VE + GR I+V E+PYQVNK+ IEK+A+LV + R+EGI+ +RDESD+ G Sbjct: 252 THVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQG 311 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MR+VIE+KR+ + VL +LY QT LQ +FG+ ++AL +P ++L++++ F+ R + Sbjct: 312 MRVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNKPCQLSLRELLEEFLNFREQ 371 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 +TR+ EL +A+ R H+LE L +AL N+D +I ++R+AP AK Sbjct: 372 TLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAK------------- 418 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + + E + +E+QA +IL + +++LTGLE +KL EY++ Sbjct: 419 --------------QKFQEELTI-------SEEQADSILAMPMRRLTGLEQQKLQTEYED 457 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA-------------- 526 L +I +L +L LM+ ++++L ++ +FGD+RRT I +++ Sbjct: 458 LQQRINQLQVLLNDRIELMKSLKKDLRALKRKFGDERRTRIVSSAPTASKSEEKKGNPST 517 Query: 527 -------------------DINLEDLITQE----DVVVTLSHQGYVKYQPLSEYEAQRRG 563 D + L T + D V+T++ QGY+ +Q +E+ + Sbjct: 518 PPQPSKTTTPSKSSEPKAKDSSSLSLFTPQPPPKDAVLTITEQGYIYWQSAAEFNSISSI 577 Query: 564 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLL 623 KG DF D ++ + +G+ Y + ++P + ++ ++NLL Sbjct: 578 KKGT--------DFPIYTQRIQQQDSLIVITDQGKAYPVSGSEIP--PQESQPCSLLNLL 627 Query: 624 P---LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGD 680 P + ++I + + + ++ + T G +K+ ++E ++ G IKL D D Sbjct: 628 PNSVQKNSQKIASYFLFPQQKNLSELILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDD 687 Query: 681 ELIGVDLTSGEDEVMLFSAEGKVVRF--KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP 738 L + LTS EV + + G+V+R ++ + MG N G + +RL G+ +V + P Sbjct: 688 RLGYLSLTSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQALRLRYGENIVGCVTP 747 Query: 739 RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI 798 + D +L TQ+GYGKR V G ++++ + + + G + +++++ Sbjct: 748 KIDDNLLLITQSGYGKRIPVNSLRITKLGEIGTMALQFSSKTDNLAGMILAKPKKEVILV 807 Query: 799 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 T+ + + + I G++ G +++ E+++ Sbjct: 808 TNQERRLIIPIDSVGIWGKDGVGDQVVKLKPQESIL 843 >UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria RepID=PARC_STAES Length = 800 Score = 538 bits (1385), Expect = e-151, Method: Compositional matrix adjust. Identities = 305/785 (38%), Positives = 472/785 (60%), Gaps = 45/785 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I +++E+ + + Y+ +I RALPDVRDGLKPV RR+L+AM GN ++K ++KSA Sbjct: 5 IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 + VGDVIG+YHPHGDS+VYD +VR++Q + LR++L++ GN GSID D AAMRYTE +L Sbjct: 65 KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++++ EL+ D+ KETV F+ NYD T P V+P + PNLL+NGS+GI+ G AT+IPPHNL Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EVI G L YID DI+I LM++I GPDFPT II G GI++AY TG+GKV +R+R + Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 E ++GR+ +IV EIPY+VNK+ L++KI EL +K+V+GI +RDE+D+ G+RI IE+ Sbjct: 245 -EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRIAIEL 303 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K+DA E + N LY + LQ+S+ NMVA+ G+PK+M L++II +++ H+ EVVT RT Sbjct: 304 KKDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTR 363 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 ++L +A R HI+E L AL+ +D +I LIR++ +AK LVA Sbjct: 364 YDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE-------------- 409 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Y TE QA+AI+ L+L +LT + E L E++EL I E Sbjct: 410 --------------------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKE 449 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDVVVTLSH 545 L IL + + L+ VI++EL ++++F R + I A ++I + E ++ E+V+++L+ Sbjct: 450 LRNILDNHEALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQ 509 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K + A G + +K+ D + + NT D +L F+++GR + V+ Sbjct: 510 HGYIKRTSTRSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVH 564 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 +L + G+ I ++P+++DE + + +F+ MAT NG +KK+ ++F Sbjct: 565 KLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIKKSSASQFKT 624 Query: 666 LR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 R + +K+ D DELI V + + + + +G + + + + G GV+ I Sbjct: 625 TRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELSDTGLRAAGVKSI 684 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER--NGL 782 L + D VV +I+ TQ G KR RA +G+ +K ++ + + Sbjct: 685 NLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKKKPHRI 744 Query: 783 VVGAV 787 V GAV Sbjct: 745 VAGAV 749 >UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZEN0_BREBN Length = 847 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 310/830 (37%), Positives = 489/830 (58%), Gaps = 56/830 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L+ +I + E + + DYA VI+ RA+PD RDGLKPV RR+LYAM GN +K Y Sbjct: 2 LSNQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPY 61 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VG V+G YHPHGDSA+Y+T+VRMAQ + +R +L+ G GNFGS+D D AAMRYT Sbjct: 62 RKSAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRYT 121 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ +A+EL+ D+EK+TV F+ NYD + + P V+P++ PNLLVNG++GIAVG AT+IP Sbjct: 122 ESRLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIP 181 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 HNL EVI+ +A + + +IS++ LM+H+ GPDFPT I+ G GI +A+ TGRG+ IR Sbjct: 182 THNLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGGIVQGLSGIRKAFETGRGQFIIR 241 Query: 244 ARAEVEVDAKTGR-ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-----D 297 + VE + K G+ + I+V EIPY+V K++L+ +I ELV E+++EG A+RDE+ + Sbjct: 242 GKTHVE-EPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAE 300 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 + +RIV++++++A + +LN LY T LQ+ + NM +H G + M LK ++ A++ H Sbjct: 301 QKKVRIVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVIHEGTIRQMGLKALLGAYIDH 360 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 ++EVVT R ++L + + R HI+E L A + + I++ I + A+AK ++ Sbjct: 361 QKEVVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEK---- 416 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 Y T+ QA AIL ++L LT L+ KL E Sbjct: 417 ------------------------------YGFTDNQADAILSIQLASLTRLDIVKLEKE 446 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDL--IT 535 L +I EL IL S +L++VI EL +++++ ++R TEI +I ++ I Sbjct: 447 LATLAKEIEELKSILASEKKLIQVITGELNEIKKKYAEERLTEIQGEIEEIKIDIAMQIN 506 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 ED +VTL+++GY+K +++ GG ++ +KE D + + NT L F+ Sbjct: 507 AEDCIVTLTNEGYIKRTSPRSFKSV--GGTLETCG-VKEGDRVRYFMETNTSHTALFFTQ 563 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 G+ ++ V P+ G +VN++PLE+++RI V F++ + V+ + NG + Sbjct: 564 DGKYFATLVNAFPDDKWKDIGSALVNIIPLEKNQRIVGFTIVENFKQPLYVYHVSKNGLM 623 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 KKT L+E+ R++ VA KL G DE + V + ++ + +G +RF+ S V A Sbjct: 624 KKTALSEYETNRSSALVAAKLKGGDDEFMNVFVADEAGAILGATKDGMGIRFQRSEVSAT 683 Query: 715 GCNTTGVRGIRLGEGDKVVSLI----VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 G ++GV+ I L GD V++++ V ++LTA G KRTA+ P ++RA KG Sbjct: 684 GRASSGVKAIALAPGDDVITMLPIEEVDSRAFSLLTA--EGVVKRTAIGAIPLQARAGKG 741 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR---VSEISIVGR 817 V I+ + N + A+ +++ + TLV T V+E +GR Sbjct: 742 VQLIRKRKNNPHELVAMFLEETVYAWTSQNEWTLVETEQVIVNEQGGIGR 791 >UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=GYRA_AQUAE Length = 744 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 318/760 (41%), Positives = 465/760 (61%), Gaps = 70/760 (9%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + IEEE+K +Y+DYAMSVIVGRA+PDVRDGLKPV RR+LY+M +G +K +KKSAR+V Sbjct: 10 IPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKKSARIV 69 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 G+ +GKYHPHGD AVY+ +VRMAQ F++RY L+ GQGNFGSIDGD AA MRYTE +L+ + Sbjct: 70 GETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEAKLSPL 129 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ D++K+TVDF N+D T P+V+P+K PNLL NG+SGIAVG+AT+IPPHNLTEV Sbjct: 130 AVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPHNLTEV 189 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 N + + IS++ +ME + GPDFPT +I ++E Y+TGRG + ++ +A VE Sbjct: 190 GNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKVKGKAHVE- 248 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 + GRE I++ EIPYQVNKA LI+KIA+ V+ +++ IS +RDE+DK+G+RIV+E+KRD Sbjct: 249 KVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVVELKRD 308 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 A GE VL LY T L+ F +N+V L +PK++++K ++ F++HR EV+ RR+ + L Sbjct: 309 AKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVILRRSKYFL 368 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 +K +DR HI+E L A+ ID IIE IR + +EA+ Sbjct: 369 KKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARN---------------------- 406 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 +L EFG L+E+QAQA+LDLRLQ+LT LE EKLL+E KEL ++I + Sbjct: 407 -----YLMEEFG-------LSEKQAQAVLDLRLQRLTSLEREKLLEEEKELREKIEYYKK 454 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 ++ S ++V EE E + +++GDKRRT I + + + V + G + Sbjct: 455 LVASEGERIKVFIEETEELVKKYGDKRRTFIGGVKE-------VKEGSITVAVLQDGSI- 506 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 P+ E ++ ++ L V T + + S+RGRVY + Q A Sbjct: 507 -IPVEELPLEK-------------APVVNILRVPFT-EGLFLVSNRGRVYWIAGSQ---A 548 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG 670 +G++ V+L ++E+I +F G ++ +AT G VKK L EF + G Sbjct: 549 LQGSK----VSL--KSREEKIVGAFIREKF--GNRLLLATKKGYVKKIPLAEFE-YKAQG 599 Query: 671 KVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGD 730 IKL +GDE++ + + E ++LF+ +G+V RF V GV+GI+L + D Sbjct: 600 MPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKND 659 Query: 731 KVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 + L + G+ +L T G K+ + E P +R KG Sbjct: 660 ETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG 699 >UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV72_BACTU Length = 740 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 313/768 (40%), Positives = 458/768 (59%), Gaps = 36/768 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I ++ +E+KSS++DYA++V+ RALPDVRDGLKPVHRR+LYAM LG +KAYKKS Sbjct: 4 KIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAYKKS 63 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 AR+VG+VIGKYHPHGDSAVY+++V+ AQ F L+DG GNFGS+DGDSAAAMRYTE R Sbjct: 64 ARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYTEAR 123 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L+ +A E++ DL K VDF DN+D +E+ P V+P K+PNLLVNG GIAVGMA PPH Sbjct: 124 LSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTPPHG 183 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 + V++ +AY D +DI IE L++ I PD+P+ II + + + YRTG GK IRA+ Sbjct: 184 VNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGIITNKNELRDLYRTGIGKAVIRAKI 243 Query: 247 EVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 ++E DA GR+ ++V EIPY +K L K+ +V EK++E I + DESDKDG+RIV Sbjct: 244 DIE-DAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGIRIV 302 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +EVK+ + +LN LYS+T LQ S + L +G P +NLKD + ++E+ + Sbjct: 303 LEVKKGVDIDNLLNKLYSKTPLQSSESYQYLVLVNGVPTTINLKDYCKHYFDFQKEITRK 362 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R + L KA+ R ILE L A +D IIE++R A EAK L+ GN Sbjct: 363 RYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLME-----GNT---- 413 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 E + E + +F TE+QAQAILD+RLQKL GLE E+L EYKE+L + Sbjct: 414 ESISFKTKKHENIAKKFA-------FTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAE 466 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 + E +LGS +++VI++ L ++ FG +RRTEI I + I +EDV V + Sbjct: 467 MEEYELVLGSEKEMLKVIKKYLRGFKKDFGRERRTEIQEKKT-IEYVEEIKEEDVWVLID 525 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GY K + +R + S ++ +L NT + F+++GR+Y +K+ Sbjct: 526 KFGYTK--SVDTISVERSSEETLS-------EYKQEILTKNT-SKLSVFTNQGRLYQIKL 575 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 +P+ +G PI L ++++E I TE E +V M T G +K+T+ +E Sbjct: 576 ADIPKVKIKDKGVPIQRLGKMKKNEYPLYITTNTELETE-RVIMLTKTGLIKQTLCSELI 634 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 R+ VA KL + DE+I + + DE V++FS +G ++RF + + + N GV+ Sbjct: 635 SSRSVV-VATKLEEDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKGVKA 693 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 + L E D + + + + + GK+ +++ K+R KG+ Sbjct: 694 VSLMEEDVIEGVYILNENNKDVKQLN---GKQIELSKVERKTRGKKGI 738 >UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family protein n=37 Tax=Clostridium RepID=Q0SRA9_CLOPS Length = 979 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 309/738 (41%), Positives = 442/738 (59%), Gaps = 55/738 (7%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +EE + +YL YA+ V RALPDVRDGLKPVHRR+LY +L +K Y KSAR+VGD Sbjct: 19 LEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGD 78 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 ++GKYHPHGDS+VYD +V +AQ FS R L+DG GN+GSIDGD AAAMRYTE RL+ I+ Sbjct: 79 ILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTEARLSSISM 138 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 E++ D+EK VD V NY +E P V+P + PNLLVNG+ GIAVG++TNIPPHNL EVI+ Sbjct: 139 EMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPPHNLREVID 198 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 G LAYID+ +I+ LM +I GPD PT ++ G + + AY TG GKV +RA+A++E Sbjct: 199 GTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLRAKAKIET-L 257 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKR----VEGISALRDESDKDGMRIVIEVK 308 + GR I++ E PY+ NKAR+++ I+++ +KR ++GI +RDESD+ G+R VIE K Sbjct: 258 ENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTGIRAVIEFK 317 Query: 309 RDA---VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 + + + VL LY +T LQ + NMVAL G+P+ M LK II+ +V H+++VVTRR Sbjct: 318 KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNHQKDVVTRR 377 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T EL A R HI+E A+ +D +I IR + + +A LV Sbjct: 378 TKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVL------------- 424 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 +FG T+ QA+AIL+L L +LTGLE + E+KEL +I Sbjct: 425 --------------KFG-------FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKI 463 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDVVVTL 543 L +IL + L+ VI++EL+ V E +GD+RRT + + A I+LE+LI EDV+VTL Sbjct: 464 KALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEELIVAEDVMVTL 523 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S++G++K PL Y R ++ +E D++ L+ +NT D + F+ +G VY +K Sbjct: 524 SNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIK 580 Query: 604 VYQLPEAT---RGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + + +G R ++ L LE DE+I A+ + F TANG +KKT L Sbjct: 581 CNSVADKKWKDKGERLEDLIRGLSLE-DEKIIALESIENFLPNKCFKFITANGLIKKTTL 639 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVRFKESSVRAMGCN 717 +F + +AIKL + D L V L +DE V + + G E + N Sbjct: 640 DKF-VTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRN 698 Query: 718 TTGVRGIRLGEGDKVVSL 735 GV+ + L G+++ S+ Sbjct: 699 ILGVQLVPLKSGNQIKSI 716 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 19/211 (9%) Query: 585 NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE--- 641 N+ +I+ FS++G+V+ Y L + T + +V+ E+DE I + P+ EF Sbjct: 754 NSFRNIIAFSNKGKVFKFPAYLL-QNTEESNISDLVD--GFEKDELIIKVAPINEFGKIG 810 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-VDGDELIGVDLTSGEDEVMLFSAE 700 E + V+ + G VKKT L EF ++A K DEL+ VD+ V+L + Sbjct: 811 EDLFVYFFSREGLVKKTSLREF-LGEFNNQIAYKFKTPKDELVNVDINFENATVILVTKN 869 Query: 701 GKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVV-SLIVPRGDG---AILTATQNGYGKRT 756 G ++F +++ MG +GV GI L + +KV+ ++P +G L A N Y K Sbjct: 870 GMGIKFLATAINPMGRIASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEA-YNDYKKEL 928 Query: 757 A------VAEYPTKSRATKGVISIKVTERNG 781 V E K +A + IK+ R G Sbjct: 929 TSNYEKLVLESKQKEKAEVNIEDIKLQNRAG 959 >UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S991_OSTLU Length = 897 Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/863 (36%), Positives = 479/863 (55%), Gaps = 93/863 (10%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I V + E K+SYL YAMSVIVGRALPD RDGLKPVHRR+LY M+ LG +K ++K Sbjct: 34 KIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHRKC 93 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGD +VY+ +VR+AQ FS+ LVDG GNFGS+D D AAMRYTE R Sbjct: 94 ARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYTECR 153 Query: 127 LAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 L K+A + L+AD+ E V+F + +DG++ P+V+P ++PNLL+NGSSGIAV +ATN+ PH Sbjct: 154 LNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMAPH 213 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E ++ A + D S++ LM +P PDFPT ++ + G++E Y TG+G V +R R Sbjct: 214 NLGESVDALCALAKNPDCSLDELMALLPAPDFPTGGVVTNKSGMKEIYETGKGGVTLRGR 273 Query: 246 AEVE-VDAKTG---RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 A +E V A G ++ +++ EIPYQ NKARL+E+IA+ V + ++GIS +RDESD+DGM Sbjct: 274 ATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRDGM 333 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 R+VIE+KR VL LY++T+L+V F +N VAL +P +M L+ I+ F++ R + Sbjct: 334 RVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNKPTVMPLRQILDEFIKFRVDT 393 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 + RRT F L KA+DR H++E ++ LA+ D ++++IR Sbjct: 394 IERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIR----------------------- 430 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 ++ D + + L G L++ QA +IL + L++LTGLE +KL E KEL Sbjct: 431 ----KSKDGPSASKKLRESHG-------LSDIQADSILAMPLRRLTGLEADKLDAELKEL 479 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 +QIA +L + ++++V+ +E +E F RRT + + +ED +D ++ Sbjct: 480 NEQIAHFQGLLSNKSKVIDVLVQEAMEAKEAFARPRRTSVEQIESLSGVEDDSPPKDNIL 539 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 TLS +GYVK + AQ RG +GK ++++ D + + + D IL FS RGRV Sbjct: 540 TLSERGYVKRICPKNFGAQNRGTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRVQK 599 Query: 602 MKVYQLPEATRGARGRPIVNLLPL--EQDERITAILPVT----EFEEGVKVFMATANGTV 655 + +P++ G P +LL ++++ +TA+L E + V M T+ G V Sbjct: 600 LSAKAIPQSELNTIGVPATSLLNTFAKRNQNVTAMLSTNMKQGEVADDQVVVMLTSQGKV 659 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLF----SAEGKVVRFKESSV 711 +V + + L GK I L GD L V D + + + +G ++ + Sbjct: 660 --SVASAASMLGHKGKKVITLDKGDRLQQVMFARTSDHLFITGTGKAGKGLILHCRVGDF 717 Query: 712 RAMGCNTTGVRGIR-LGE---GDKVV--------------SLIVPRGDGA---------- 743 R + + GI+ +GE + VV L+ P+ G Sbjct: 718 RVVKSACRPISGIKTMGEKKVAEAVVEDAGDDEDDDEDDGELLPPKTVGMAIVPGERMVS 777 Query: 744 --------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV------ 789 IL T+ G GK A Y R GV+ +K + + + + + Sbjct: 778 ASEEFGPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKKGDDDALATITLVDRIGD 837 Query: 790 DDCDQIMMITDAGTLVRTRVSEI 812 D D++++ T G R V+++ Sbjct: 838 DVTDEVLLSTTGGISNRIAVNDL 860 >UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicutes RepID=PARC_STRPN Length = 823 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 306/849 (36%), Positives = 482/849 (56%), Gaps = 65/849 (7%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I +++E+ + + Y+ +I RALPD+RDGLKPV RR+LY+MN N ++K+Y+KSA Sbjct: 4 IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 + VG+++G +HPHGDS++YD +VRM+Q + R +LV+ GN GS+DGD AAMRYTE RL Sbjct: 64 KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++IA L+ D+EK+TV F N+D TEK P V+P PNLLVNGS+GI+ G AT+IPPHNL Sbjct: 124 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EVI+ + ID I+ LME +PGPDFPT AII GR I++AY TG+G+V +R++ E Sbjct: 184 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTE 243 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E K G+E I++ EIPY++NKA L++KI ++ +V GI+ +RDESD+DG+RI IE+ Sbjct: 244 IE-KLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K+DA E+VLN L+ T LQ+++ NMVA+ + P+ + + I+++++ HRREV+ R+ Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F+ KA R HI+E L ++ +D +I LIR + A+AK L + Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVS-------------- 408 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Y TE+QA+AI+ L+L +LT + L +E EL ++IA Sbjct: 409 --------------------YDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAM 448 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLITQEDVVVTLSH 545 L I+G + ++++EL V+++F R + + TA + +I+ LI +ED V+++ Sbjct: 449 LAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTK 508 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K + A GK +++D + + A T H+L F+S G V ++ Sbjct: 509 AGYIKRTSPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIH 563 Query: 606 QLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 +L + G + + E +E I + + +F++ F T G +K+ EF Sbjct: 564 ELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFT 623 Query: 665 RLRTAGKVAIKLV----DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 RT ++K D D+++ V D+V+L S G +RF V +G G Sbjct: 624 PWRTYRSKSVKYAKLKDDTDQIVAVAPIKL-DDVVLVSQNGYALRFNIEEVPVVGAKAAG 682 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI---SIKVT 777 V+ + L E D + S + L TQ G KR ++ E SRA +G+ +K Sbjct: 683 VKAMNLKEDDVLQSGFICNTSSFYLL-TQRGSLKRVSIEEILATSRAKRGLQVLRELKNK 741 Query: 778 ERNGLVVGAV------------QVDDCDQIMMI-TDAGTLVRTRVSEISIVGRNTQGVIL 824 + GAV +VD DQ +++ ++ GT+ +R+ ++++ R + G + Sbjct: 742 PHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFI 801 Query: 825 IRTAEDENV 833 T DE V Sbjct: 802 SDTISDEEV 810 >UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K4_SPHTD Length = 813 Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust. Identities = 303/836 (36%), Positives = 475/836 (56%), Gaps = 59/836 (7%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 + +++ YA++V+ RALPD RDGLKPV RR+L+ M G+ N+ KSA VVGDV+ Sbjct: 23 FEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPTVKSASVVGDVLKS 82 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 136 YHPHGDSAVYD VRMAQ F++RY L++GQGNFGSIDGD+AAA RYTE+RL+ I L+ Sbjct: 83 YHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDGDAAAAYRYTEMRLSPIGELLLR 142 Query: 137 DLEKETVDFVDNYDGTEKI--PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 194 D+E+ETV F Y + P +P +IP + N SSGIAVG++T+IPPHNL E I Sbjct: 143 DIEQETVPFEQTYLQMPNVVQPVYLPARIPP-ICNPSSGIAVGLSTDIPPHNLREAIRAA 201 Query: 195 LAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKT 254 +A +D+ +++++ LM+ +PGPDFPT I G GI +G+G++ I R EV ++ + Sbjct: 202 IALLDNPEMTVDELMKILPGPDFPTGGRIIGTDGIRAYLESGKGRLVI--RGEVRLEEEL 259 Query: 255 GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD-GMRIVIEVKRDAVG 313 + ++V EIP ++++RL+ I V + +V G++ +R+ESD + G RIV+E++R A Sbjct: 260 RQRNLVVTEIP-PISRSRLVRSIINAVNDGKVTGVTDVRNESDDEKGTRIVVELERSATP 318 Query: 314 EVVLNNLYSQTQLQVSFGINMVALHHG------QPKIMNLKDIIAAFVRHRREVVTRRTI 367 EVVLN LY T LQ + +NMV L QP+ + D++ + RH+ +V+TRR Sbjct: 319 EVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLLRYWNRHQIDVITRRAE 378 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 ++LRKA++R H++E L + A+ D I+ + + A AK + Sbjct: 379 YQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEKIKVK-------------- 424 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Y LT+ QA I ++ L ++T L+ K +E KEL +I E Sbjct: 425 --------------------YNLTDIQADVIANMTLAQVTRLDAAKYAEEKKELTKRIKE 464 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVVTLSH 545 L +L S + + +++EEL + ++ GD RRT I + ++ LI + +++ S Sbjct: 465 LQALLASEAKKVALLKEELTAIAQEHGDDRRTRIDREGQEEIASVASLIEERPILIVASQ 524 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 G VK P + ++ R G R + + ++ A+T D++L + GRVY + + Sbjct: 525 SGRVKALPENAFKRARAG-------RTARGEGLAAIVPASTLDYLLVLTRGGRVYLSRGH 577 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 ++P TR + G P + L+ DE + ILPV E E V TANG VKKT L E+ Sbjct: 578 EVPAGTRASSGEPAQKVFGLKPDEALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRT 637 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 + +AG ++L+ D ++ L+ E ++ ++ G+ +RF + VRA G + GV I Sbjct: 638 ITSAGLNDLRLLGDDRVVAATLSESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIA 697 Query: 726 LGEGDKVVS--LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 L G +VV+ I P+ DG +L T G GKRTA+ ++P + RAT GV +I + + + Sbjct: 698 LKAGAEVVTALAIPPKSDGDVLVVTAQGMGKRTALKDFPARRRATAGVAAITLA-KGDRI 756 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 GA V D +++ G ++ V ++ GR T+G L+ A++++V + RV Sbjct: 757 AGAALVTPDDDVVLGAAGGQALQVTVKDLRRQGRATKGSRLLEVAKNDHVATIARV 812 >UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales RepID=C7XU56_9LACO Length = 843 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 293/781 (37%), Positives = 452/781 (57%), Gaps = 51/781 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSD +I + +E+ + + Y+ S+I RALPD+RDGLKPV RR+L+AMN GN ++ Sbjct: 1 MSD--NKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYD 58 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K ++KSA+ VG+V+G +HPHGDS++Y+ +VR++Q + LR L++ GN GS+DGD AAAM Sbjct: 59 KGFRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAM 118 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+KIA ++ D++K+TV+ N+D TEK P V+P +IPNL VNG++GI+ G AT Sbjct: 119 RYTEARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYAT 178 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL E+I + + + ++ LM ++PGPDFPT II G GI +AY TGRG+V Sbjct: 179 EIPPHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGGIIQGVDGIRKAYETGRGRV 238 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA +E + + GR+ IIV EIPY VNKA+L+++I +L K+VEGIS RDE+D+ G Sbjct: 239 ILRANTTIE-ELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSG 297 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RI IE+KR+A +LN L T LQ+++ NMVA+ + +P + LK + +++ ++E Sbjct: 298 LRIAIELKRNADANGILNYLLKNTDLQINYNFNMVAIDNQRPMRVGLKHYLKSYLAFQQE 357 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++TRRT F L KA+ R HI+E L AL+ +D +I+ IR + +A LV Sbjct: 358 IITRRTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNE------- 410 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y T+ QA+AI+ L+L +LT + L DE + Sbjct: 411 ---------------------------YQFTQPQAEAIVALQLYRLTNTDVTDLRDEQQR 443 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLIT--QED 538 L D IAE +IL + L V+ +E + + +QFG R+T+I + + ++ +T E+ Sbjct: 444 LNDSIAEYNKILNDQNELNRVLVKEFKAIDKQFGSDRKTQIEKHIQKLTVDTKVTVPDEE 503 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 VVV +SH GY+K L ++A G ++E+D+ + A+T +H+ F+++G Sbjct: 504 VVVLVSHAGYIKRTSLRSFKASVLEENG-----LREDDYPLLIQRASTLNHLFMFTNQGH 558 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 V V++L +A G I + L DE I L E + +T++G VK+T Sbjct: 559 VIYRPVHELTDAKWKETGEHISQSIGLADDEEIIKALIFENLELPGTMIFSTSDGQVKQT 618 Query: 659 VLTEF---NRLRTAGKVAIKLVDGD-ELIGVDLTSGEDE---VMLFSAEGKVVRFKESSV 711 + + +R ++ V +KL D +I + + + + S G +RF + V Sbjct: 619 TIQDLKPGSRYKSRASVVMKLKDASARMINAEYYEPQAQNVSLTAISKHGYGLRFDVAEV 678 Query: 712 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 G T GVR I L + D++V+L+ D + TQ G K E SRA +GV Sbjct: 679 PTQGTRTAGVRAINLKDDDELVNLVQTADDDRLAIMTQRGAFKEMRANELEVGSRARRGV 738 Query: 772 I 772 + Sbjct: 739 L 739 >UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firmicutes RepID=A9KS51_CLOPH Length = 748 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 301/781 (38%), Positives = 456/781 (58%), Gaps = 49/781 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M A I ++ EE+K+S+ +YAMSVI+ RA+PDVRDGLKPV RR+LY+M LG D Sbjct: 1 MKKEAENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPK 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K ++KSAR+VGD +GKYHPHGDS++YD +V M +P+S++ LVDG GNFGSIDGD AAAM Sbjct: 61 KPHRKSARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+ A L+ L+K V+FV N+D +EK P V+P +PNLL+NG++GIAVGMAT Sbjct: 121 RYTEARLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+PPHN +EVI G +AYID+ DI+ EGLM++IPGPDFPT I I Y TG G++ Sbjct: 181 NMPPHNPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSEDIRNIYETGEGRL 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDK 298 +RA+ E+E + GR+ I++ EIPY V NK +L+E + +L+K+K + I +RDES K Sbjct: 241 KVRAKTEIEA-SDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSK 299 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+R+VIEVK+D E +LN LY +T ++ ++G+N++A+ QP + LK+++ FV + Sbjct: 300 EGIRVVIEVKKDRDIENLLNGLYKKTSMEDTYGVNLLAVKDQQPIVFKLKNLVGEFVSFQ 359 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 E+ T+ L KA R I++ L A ID IIE++R + + +AK L+ G Sbjct: 360 EELYTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIH-----G 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 N + + +A+R + + +F TE+QA AIL + L KL GLE +L +E Sbjct: 415 NTTEINFKT--EASRKKAAKLDF---------TERQADAILAMPLSKLIGLEILRLHEEN 463 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 + LLD I + ILG+ L +VI+ L+ ++QF R T + AN + + ED Sbjct: 464 QSLLDSIEQYQSILGNKKELFKVIKSNLKEYKKQFNVPRHT-VLANMEIAEYVEEVKVED 522 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE---DFIDRLLVANTHDHILCFSS 595 + + + GY K S +R+ E+ DF+ + + NT D + F++ Sbjct: 523 IYILIDKFGYTK------------SVDNTSISRVSEDNLKDFVHIVKMKNT-DRLCLFTA 569 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 +G +Y +K ++P+ +G I NL ++++E + I FE ++ T NG + Sbjct: 570 QGNMYQVKAEKIPKCKIKDKGTLIHNLCKVDKEEILLYIAFEDLFES--QLLFTTKNGFI 627 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGV------DLTSGEDEVMLFSAEGKVVRFKES 709 K EF R A A KL + D ++ V +++ + +V+L + + + F + Sbjct: 628 KLVSGIEFETNR-AMISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLT 686 Query: 710 SVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK 769 V + + GV+GI L + DKV V + GK + + + RA K Sbjct: 687 EVSELKKTSKGVKGITLEKKDKVAFATVALPETEFFEYQ----GKELSAKKVRNRKRAAK 742 Query: 770 G 770 G Sbjct: 743 G 743 >UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF72_ACHLI Length = 857 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 290/769 (37%), Positives = 444/769 (57%), Gaps = 46/769 (5%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I V +E+ + S + Y+ +I RALPD RDGLKPV RR+LYAM +G +NK+YKKS Sbjct: 15 KIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSYKKS 74 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 AR+ G+V+GKYHPHGDS++Y+ +VRM+Q F +R LVD GN GSIDGDSAAAMRYTE R Sbjct: 75 ARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAMRYTEAR 134 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L+K A L+ D++K TV+FV N+D E+ P V+P + PNLLVNG+ GI+ G AT IPPHN Sbjct: 135 LSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYATKIPPHN 194 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+ +A ID+ +I+ + ++++I GPDFPT I+ G+ GI+EA TG GK+ IRA+ Sbjct: 195 LNEVIDATIALIDNPNITNDEILKYIKGPDFPTGGIVQGKAGIKEALTTGSGKIIIRAKM 254 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 VE +K+ ++ I++ EIPY+VNKA L+ +I L +E I +RDE+D++G+RI I+ Sbjct: 255 NVEEMSKS-QDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEGLRIAID 313 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K+ A + + N L + LQV++ NMVA+ +P + +++ ++ H++EVVT R+ Sbjct: 314 LKKGADAQFIQNYLLKSSDLQVNYNYNMVAILKHRPVLSGAFELLKVYLEHQKEVVTNRS 373 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 +EL +A R HI++ L + + +IE IR + A++K Sbjct: 374 NYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSK------------------- 414 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 E ++ FG +E QA+AI+ L+L +L+ + + LLDE L +I Sbjct: 415 --------ENIQKRFG-------FSELQAEAIVMLQLYRLSTTDIQALLDEKDTLYKEIT 459 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQEDVVVTLS 544 L +IL + L++ I+ EL+ V+ RRTE+ A + I+ +DLI+ E V ++ Sbjct: 460 RLEQILSNERILLKTIKSELQEVQTLLPSPRRTELEAEIETIKIDEKDLISDEQTYVAIT 519 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GYVK L A + G ++ A + EE+ NT D +L F++ G+ + V Sbjct: 520 KDGYVKRASLRSVVASKEVGLKENDAMLYEEEL-------NTLDTLLLFTNLGQYIYLPV 572 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++ E G I N++P + E I +L V++F K+ + T G +K+ L +F Sbjct: 573 YKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVSDFSIDQKILLTTKQGQMKQVNLADFE 632 Query: 665 RLRTAGKV-AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 R + A+KL DEL+ VD D ++ S G V+RF + G GV+ Sbjct: 633 VSRYNRPLRAMKLSKDDELVSVDYNQL-DNIVAISKHGYVLRFDTEELPVYGLTAGGVKS 691 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 + L EGD+V + T G+ + V E P +R +G+I Sbjct: 692 MALAEGDEVAVAFYAKESDDFYFLTSRGHIIKDTVLELPKYARNRRGII 740 >UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms RepID=C1N3Z1_9CHLO Length = 1082 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 294/786 (37%), Positives = 436/786 (55%), Gaps = 106/786 (13%) Query: 16 ELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIG 75 E SYL YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG D K +KK ARVVG+V+G Sbjct: 70 EASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFKKCARVVGEVLG 129 Query: 76 KYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE-L 134 K+HPHGD +VYD +VRMAQ FS+ LVDG GNFGS+D D AAMRYTE RL +A L Sbjct: 130 KFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPPAAMRYTECRLRSVAEAML 189 Query: 135 MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 194 +AD++ + VDF + +DG++ P V+P ++PN+L+NGS+GIAVGMAT+IPPHNL EV + Sbjct: 190 LADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMATSIPPHNLREVADAL 249 Query: 195 LAYIDDED-ISIEGLMEHIPGPDFPTAAIINGR---RGIEEAYRTGRGKVYIRARAEVE- 249 Y D D +++ L++ +P PDFPT+ II +G + Y TG+G V +R A +E Sbjct: 250 AVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATGKGSVTLRGAAHIEE 309 Query: 250 ----VDAK--TGRETIIVHEIPYQ-----------------VNKARLIEKIAELVKEKRV 286 V K T + +I+ IPYQ NKA L +IA+LV +++ Sbjct: 310 IKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKASLCGQIADLVNSRQL 369 Query: 287 EGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMN 346 +G+ +RDESD+DGMR+V+E++R V LY++T+LQV +N+V L +PK++ Sbjct: 370 DGVVDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTRTRLQVRVSVNLVGLIGREPKVLT 429 Query: 347 LKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEA 406 L DI+ F+ R E + RR EL KA R H++E A D ++ IR A EA Sbjct: 430 LMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPDAVVAAIRAAKDGPEA 489 Query: 407 KTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKL 466 + L P + L+++Q++A+L + L++L Sbjct: 490 QKTLQEAP---------------------------------FSLSKEQSEAVLAMPLRRL 516 Query: 467 TGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA 526 TGLEH+KL E +L ++ +L +L ++ + E + +R+++G +R+T I ++A Sbjct: 517 TGLEHDKLRAEEADLTAKVEQLNALLSDRALVIAAVASEAKELRDKYGVERKTLIDHSAA 576 Query: 527 DINLE-------------------DLITQE--------------------DVVVTLSHQG 547 + E ++ +E D ++ ++ +G Sbjct: 577 KLAAEVAEARRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLDSLDADNLIVMTGKG 636 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Y+K + Q +G GK R++ D + ++ N D +L F+ RGRVY+++ Y + Sbjct: 637 YIKRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRVYAVRAYDI 696 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPV-TEFEEGVKV----FMATANGTVKKTVLTE 662 P+++ A G P +L L + E ITA+LPV T G V M TA G VKKT ++E Sbjct: 697 PQSSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNVGEHLVMLTARGVVKKTPISE 756 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 F + AGK A+ L GD L V+L D +M+ +G V+ F S+RA +GV+ Sbjct: 757 FANINRAGKRALGLQKGDRLKHVELVRDGDGIMVAGVDGMVLHFSMDSIRAQSRIGSGVK 816 Query: 723 GIRLGE 728 ++ E Sbjct: 817 AMKFRE 822 >UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZH8_ERYRH Length = 822 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 289/793 (36%), Positives = 458/793 (57%), Gaps = 56/793 (7%) Query: 24 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 83 Y+ +I RALPDVRDGLKPV RR+LYAM N ++K Y+KSA+ VG VIG YHPHGDS Sbjct: 22 YSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYRKSAKTVGLVIGNYHPHGDS 81 Query: 84 AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 143 +VY+ +VRM+Q + + L+D QGN GSID D AAAMRYTE R++K++ +L+ ++++E V Sbjct: 82 SVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRYTEARISKLSQKLLENIDEEVV 141 Query: 144 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 203 FV N+D P V+P + PNLLVNGS+GIA G ATNIPP NL E+++ + + + + Sbjct: 142 PFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPPFNLNEIMDASIYRLHNPNC 201 Query: 204 SIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHE 263 S+E +M + GPDFPT AII G+ GIE+ R G+G++ +RA+AE+ V+ K+ ++ I++ E Sbjct: 202 SVEEIMTMVQGPDFPTGAIIQGQEGIEDIIRKGKGRIVVRAKAEI-VENKSMKQ-IVITE 259 Query: 264 IPYQVNKARLIEKIAELVKEKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVVLNNL 320 +PY+V K+ ++ KI EL K EG + +RDESD+ G+RIVI+ KRDA E +LN Sbjct: 260 LPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTGLRIVIDCKRDANVESILNLF 319 Query: 321 YSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHIL 380 Y T+LQV + NMVA+ +PK+ L +++ A+++ R+EVV R+ + + R HIL Sbjct: 320 YKYTELQVYYNANMVAIVDQRPKVCGLLEVLDAYLKFRQEVVLNRSKYRYEQKEKRLHIL 379 Query: 381 EALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPE 440 E L A +N+D II +IR + +E++ ++A E Sbjct: 380 EGLMKATSNLDEIIAVIRSSNNRSESRNNIMA---------------------------E 412 Query: 441 FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLME 500 FG TE QA AI+DL+L +L+ + L DE+ +L +++ L ++ + D L Sbjct: 413 FG-------FTEAQATAIVDLQLYRLSSTDINALRDEFAKLANELEYLDLVINNIDMLNN 465 Query: 501 VIREELELVREQFGDKRRTEITANSADINLE--DLITQEDVVVTLSHQGYVKYQPLSEYE 558 +I +E ++E F RR+ I A +++ ++ LIT E V+VT+S GY+K L Y Sbjct: 466 MIVKEFMEIKEAFDTPRRSVIEAEISELEVDHLSLITNEAVMVTVSRDGYLKKVSLRSY- 524 Query: 559 AQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP 618 G K + +ED T D+++ +SRGR + V+++ EA G Sbjct: 525 ----GSSQKDVIALMDEDMPVFSSEVETTDYLVFVTSRGRYGMILVHEIDEARWRDTGSH 580 Query: 619 IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV-AIKLV 677 I + + +E+I ++ + F+ + +TA+G +KKT ++E RT +KL Sbjct: 581 INQYMKCDPNEKIISVFTLKSFDTYRFIVTSTASGMIKKTAISELEVKRTNRLYDVMKLG 640 Query: 678 DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV 737 DEL+G +TS ++ ++L S EG+ +R + + +G GV G++L D+VVS + Sbjct: 641 KHDELVGAVITSNDEHLLLVSKEGQCMRLDLAEINPIGLRAKGVIGMKLKLNDRVVSTMG 700 Query: 738 PRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG-----LVVGAVQVDDC 792 + ++ + KR + +RAT+G +K+ + N L VG +Q Sbjct: 701 LSDESEVVFVSDRFQMKRIKAQDIAINNRATQGTSIVKMVKSNPHCLAELFVGNIQ---- 756 Query: 793 DQIMMITDAGTLV 805 D I++ D +++ Sbjct: 757 DHILIYNDHTSII 769 >UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L827_MAGSM Length = 754 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 289/697 (41%), Positives = 414/697 (59%), Gaps = 61/697 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MS+ +I P N+ EEL+S YL YA+S I+ R+LPDVRDGLKPVHRR+L+AM L D N Sbjct: 1 MSNTFEQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 YKKSARVVGDVIGKYHPHGD A YD +VR+AQ F++RY LVDGQGNFG+IDGDSAAAM Sbjct: 61 SPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL +A L+ DLE +TVDF+ YDG+ + P V+P + PNLL NGSSGIAVGM+T Sbjct: 121 RYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMST 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIE-EAYRTGRGK 239 N+PPHN+ E+++ CL I + SIE LM+H+P PDFPT I+ E Y GRG Sbjct: 181 NVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRGS 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 + +RAR VE D G I+V EIPYQV K+RLIE+IA+LV +++ ++ +RDESD++ Sbjct: 241 LRLRARWAVE-DLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDEN 299 Query: 300 GMRIVIEVK-RDAVGEVVLNNLYSQTQLQ--VSFGINMVALHHGQPKIMNLKDIIAAFVR 356 +RIV+E + R E++++ L+ + L+ SF +N++ H +P++++LK I+ ++ Sbjct: 300 -LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGH-RPEVLDLKGILRHWLD 357 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 HR V TRR +EL+K R+R H+L+A + NID +IE+I+ PA A Sbjct: 358 HRFVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPVLMA------- 410 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 + L E QA+AIL++RL+ L LE K+ Sbjct: 411 ------------------------------RFSLDEIQAEAILNMRLRNLRKLEEMKIRK 440 Query: 477 EYKELLDQIAELLRILGSADRLM-EVIREELELVREQFGDKRRTEITANSADINL--EDL 533 E +EL + A+LL + + D++M + IR+EL+ R++F D RRTEI + D+++ ED Sbjct: 441 EMEELQAR-ADLLEAMLADDKIMWKAIRDELKATRKEFADVRRTEICGSVEDVHVRPEDF 499 Query: 534 ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF 593 + +E + V LS G+VK A + R K +D + R T+ + Sbjct: 500 VEKEPISVILSQMGWVK--------ANKGHDVNTEVLRFKGDDLLLRSFPCYTNQSVSFI 551 Query: 594 SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 653 S G+++++ LP A +G G P+ ++ L+ +R+ LPV +E + + Sbjct: 552 SQSGKLFTILASNLP-AGKGF-GEPLTSMFDLDGGDRVLWALPVDPEQEYLLITRLGQGF 609 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 690 VK L R GK I L GD+ + + G Sbjct: 610 RVKGVDLIANQR---KGKQLITLKSGDQPLHLHPVKG 643 >UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales RepID=C9Z0I9_STRSW Length = 818 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 308/790 (38%), Positives = 447/790 (56%), Gaps = 81/790 (10%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 +++ +E++ S+L+YA SVI RALPD RDGLKPVHRR++Y MN +G ++ Y K ARVV Sbjct: 22 IDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYVKCARVV 81 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAK 129 G+V+GK HPHGDS++YD +VR+AQPFS+R LVDG GNFGS+ + D AAMRYTE R+A Sbjct: 82 GEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYTECRMAD 141 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 + +E+ TVDF NYDG E+ P +P PNLLVNG+SGIAVGMATN+PPHNL E Sbjct: 142 ATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMPPHNLGE 201 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 VI I + ++ LM+H+PGPD PT I G GI +AY TGRG IRA V Sbjct: 202 VIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIVGLSGIRDAYATGRGTFKIRA--TVT 259 Query: 250 VDAKTGR-ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRIVIEV 307 VD T R + +IV E+P+ V ++I KI +LV K+++GI+ ++D +D+ G+R+VIE+ Sbjct: 260 VDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAHGLRLVIEI 319 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K V E VL LY T ++ SFGIN VAL GQP + LK+++ ++ HR EVV RR+ Sbjct: 320 KNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRFEVVRRRSE 379 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F K RDR H++E L AL +ID +I LIR + A+AK L+ ER Sbjct: 380 FRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLI-------------ER- 425 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + L++ Q Q ILD L++LT + +L E ++L +IAE Sbjct: 426 --------------------FALSDIQTQYILDTPLRRLTRFDRIELESEKEKLNTEIAE 465 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANS----ADINLEDLITQEDVVVTL 543 L RIL S L +++ EL V ++FG +RRT + +S A + L+ + + V L Sbjct: 466 LTRILESDAELRKLVSGELAAVAKKFGTERRTVLLESSGTQVAAVPLQ--VADDPCRVLL 523 Query: 544 SHQGYV----KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 S G + +P + E RR + D I + A + +S GR+ Sbjct: 524 SSTGLLARTASAEPFTADEDGRR----------TKHDVIVSAVPATARGEVGAVTSTGRL 573 Query: 600 YSMKVYQLPE------ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 653 + V LP+ A + G P+ L L+ E + ++ + E G+ + T G Sbjct: 574 LRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTLDESSPGLAI--GTEQG 631 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIG-VDLTSGEDEVMLFSAEGKVVRFKESSVR 712 VK+ V+ ++ + +V I L +GD ++G V+L +GE++++ + + +++R++ + VR Sbjct: 632 VVKR-VVPDYPSNKEELEV-ISLKEGDRIVGAVELRTGEEDLIFITDDAQLLRYQAAQVR 689 Query: 713 AMGCNTTGVRGIRLGEGDKVVSL--IVPRGDGAILT-ATQNG--------YGKRTAVAEY 761 G G+ GI+L EG KV+S I P D + T A G K T +Y Sbjct: 690 PQGRPAGGMAGIKLTEGAKVISFTAIDPAVDAVVFTVAGSRGTLDDSVQTTAKLTPFDQY 749 Query: 762 PTKSRATKGV 771 P K RAT GV Sbjct: 750 PRKGRATGGV 759 >UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID=Q5MZD4_SYNP6 Length = 858 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 309/882 (35%), Positives = 470/882 (53%), Gaps = 100/882 (11%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 A I P + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+LYAM+ LG ++ ++ Sbjct: 10 ADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFR 69 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSARVVGDV+GKYHPHGD AVYD +VR+ Q FS RY L+ G GNFGSID D AAMRYTE Sbjct: 70 KSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRYTE 129 Query: 125 IRLAKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RLA ++H L+ ++ +ETVDFV N+D +++ P V+P ++P LL+NG SGIAVGMATNIP Sbjct: 130 TRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNIP 189 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL E+++ +A ID +S L+ ++PGPDFPT + G +GI +AY GRG + +R Sbjct: 190 PHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILDAYLEGRGSIPVR 249 Query: 244 ARAEVE-VDAKTGRE---TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 A +E + GR IIV E+PYQV+KA IEK+A+LV + +++GI+ +RDESD++ Sbjct: 250 GIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESDRE 309 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMR+VIE++RDA + VL LY +T LQ +FG ++A+ GQP+ ++LK ++ F+ R Sbjct: 310 GMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSLKQLLEQFLSFRE 369 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 + RR EL + R ILE L +L+++D +IE++R +P A+ L + Sbjct: 370 GTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQVH------ 423 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L E+QA A+L + ++++T LE E+L E Sbjct: 424 ----------------------------FDLNERQADAVLSMPMRRITSLEQEQLQQEAA 455 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRT--------------EITANS 525 L +Q A L +LG L++ ++++L ++ +FG RT ++TA Sbjct: 456 NLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFGSPHRTRLPEIPPEAIAAPRQVTAPV 515 Query: 526 ADINLEDLIT-------------------------------QEDVVVTLSHQGYVKYQPL 554 A I+ T QE + LS + ++ Sbjct: 516 APISAPTPATAGPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASA 575 Query: 555 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 614 +E E K KS A+ + DF L A+ +L ++ GR Y + R Sbjct: 576 TELEPWL---KAKSGAQ-ERTDFPKVLQWADPRQDLLVITAEGRAYRRSL-------REV 624 Query: 615 RGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA 673 PI NLLP Q I A L + E + ++ G VK+ LTE + G Sbjct: 625 HPGPIANLLPTGRQSTAIAATLLLPLASEERSLLPLSSQGRVKRLALTELAEISNRGLQL 684 Query: 674 IKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG-VRGIRLGEGDKV 732 +KL + + + L + + EV+L S+ G+++R S + + G R +RL EG++ Sbjct: 685 LKLAEEEIIQAACLCAPQQEVLLGSSGGRLLRLSLSELPLASRISRGQPRLLRLREGEQP 744 Query: 733 V-SLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD 791 + L +P G +L +T G KR + G + + T++ ++ + Sbjct: 745 LGCLSLPSGQDLLLVSTL-GLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIALLPAPS 803 Query: 792 CDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 + +D R+ +S I++ G + +G L E + Sbjct: 804 QGLAIFASDQRLWQRS-ISTIAVTGTDAEGQTLFNLRSTETL 844 >UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinobacteria (class) RepID=C5CCL2_MICLC Length = 868 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 312/833 (37%), Positives = 451/833 (54%), Gaps = 105/833 (12%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I V++ EE+++S+L+YA SVI RALPD RDGLKPV RR+L+ M+ +G ++ + KSA Sbjct: 26 IVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRGHVKSA 85 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVG+V+GK HPHGD+A+YD +VR+AQPFSLR +VDG GNFGS+D D AA RYTE R+ Sbjct: 86 RVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRYTEARM 144 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A A L ADL++ TVDFV NYD + P V+P PNLLVNG++GIAVGMATN+ PHNL Sbjct: 145 APAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNMAPHNL 204 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EV+ G + D + +E +M HIPGPD P+ I G G+ +AY TGRG R RA Sbjct: 205 REVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIVGLDGVRDAYATGRGT--FRMRAA 262 Query: 248 VEVDAKTGRET-IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVI 305 V V+ + R T ++V E+PY V ++IE+I V K++ GI+ + D +D K+G+R+ I Sbjct: 263 VAVEQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRLQI 322 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K + VL LY T L+ +FGIN VAL GQP+ + L ++ +V HR +VV RR Sbjct: 323 ELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYVDHRLDVVRRR 382 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T L K RDR H++E L +AL +ID +IE+IR + A A+T L+ Sbjct: 383 TGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM-------------- 428 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 G++ LT+ QA IL+LRL++LT +L E EL I Sbjct: 429 --------------------GVFDLTQVQADHILELRLRQLTKFSRIELQAERDELQAAI 468 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEI-------------------TANSA 526 AEL IL S RL EV+ EL+ V ++ GD RRT + A +A Sbjct: 469 AELEAILASDARLREVVSAELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAGAA 528 Query: 527 DINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT 586 + ++ ++ LS G + L + +G R ++ D ++ Sbjct: 529 EAGVDLMVPDTACWALLSTSGRL----LRTADRTPIAPQG----RRRKHDAFASVVPTTA 580 Query: 587 HDHILCFSSRGRVYSMKVYQLPEATRGARGR------PIVNLLPLEQDERITAILPVTEF 640 I +S G ++ ++ LP A + P L+PL + E + A++P+ Sbjct: 581 RGEIGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPLDTV 640 Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE-DEVMLFSA 699 + + TA+G VK+ V E+ R A+ L DGD ++G E D+++ + Sbjct: 641 -----MALGTAHGVVKR-VRPEWPLNRQVVD-AVALKDGDAVVGAAPAPDEADQLVFLTR 693 Query: 700 EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV----------------PRG--- 740 G+++R+ S+VR G GV GIRL GD V++ V PR Sbjct: 694 TGQLLRYAASAVRPQGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVV 753 Query: 741 ----DG-AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE-RNGLVVGAV 787 DG A + + G K T + EYP K R T GV + ++ + +GLV+G + Sbjct: 754 VTVTDGEADVLGSAPGSVKVTPLGEYPAKGRGTGGVRAHRLLKGESGLVLGWI 806 >UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F36_OENOB Length = 811 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 262/771 (33%), Positives = 441/771 (57%), Gaps = 54/771 (7%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D +R I +++E+ + + Y+ +I RALPD+RDGLKPV RR+L+AMN GN + Sbjct: 1 MTDESR-IQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQ 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 AY+KSA+ VG+V+G YHPHGDS++YD +VRM+Q + +R L+D GN GSID D AAM Sbjct: 60 HAYRKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+ IA +++ DL+++ VD V N+D T P V+P++IPNLLVNG+SGI+ G AT Sbjct: 120 RYTEARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL EVIN + + S+E LM+++ GPDFPT II G GI+ AY TGRGKV Sbjct: 180 EIPPHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 Y+RA+ E++ + G++ I + E+PY+VNK+ L+ +I E+ K V GI+ +RD++ ++G Sbjct: 240 YLRAKTEIK-QLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I IE+ +DA E +L+ L+ +T LQ+++ NM A++ +P + LK ++AF+ R+E Sbjct: 299 LLIAIELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT FEL+KA+ R I+E L L+ +D ++ IR + + AK L+ Sbjct: 359 VIRRRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKK------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++ QA+AI+ L+L +LT + L +E+ Sbjct: 412 ---------------------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDR 444 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED--LITQED 538 L QI+E IL L +V+R EL+ + +++ + RR++I + + ++ +I ED Sbjct: 445 LTKQISEFNSILKETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANED 504 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V+V ++ GY K Y+A G + ++D+ L NT + F+++G Sbjct: 505 VIVQITKNGYAKRASFRSYKATDDNG-------LTDDDYPVYLAKVNTLSSLFIFTNKGN 557 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVK- 656 + +VY+L + G + + L +DE + + + ++ +++ VK Sbjct: 558 LIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQ 617 Query: 657 --KTVL--TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSV 711 K L T++ + R + +AIK + L+ V + ++ V++ + +G + +F + Sbjct: 618 VDKNALNPTKYYKKRASKAIAIK--GKNVLVSVAFAASQNHLVVMATQKGYLYKFPIGEI 675 Query: 712 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYP 762 M ++G + ++ + D++VS+ + + ++ + G+ K E P Sbjct: 676 ALMTAKSSGAKPAKISKKDRIVSMDLIDSEDLMVLMSDRGHSKIINPLEIP 726 >UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z0V3_EUBE2 Length = 769 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/798 (37%), Positives = 450/798 (56%), Gaps = 65/798 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A +I E ++ SY+DY+MSVI RALPDVRDGLKPV RRVLYAM+ LG +++K + Sbjct: 1 MAEKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPH 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSAR+VGD +GKYHPHGDS++Y+T+V ++Q F LVDG GNFGSI+GD AAAMRYT Sbjct: 61 RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120 Query: 124 EIRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 E +L K ++ +ADL+K VDFV N+D TEK P+V+P ++PNLLVNG+ GIAVGM TNI Sbjct: 121 EAKLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNI 180 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL+EV++ AY+D+EDI+ + LM+ PGPDFPT I+ + + Y TG GK+ + Sbjct: 181 PPHNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGGIVINKSELGAIYETGTGKIKL 240 Query: 243 RARAEVE-VDAKTGRETIIVHEIPYQV---NKARLIEKIAELVKEKRVEGISALRDESDK 298 R + E ++ ++ +++ EIPY + N + I + L++ K+ I + +ES K Sbjct: 241 RGKVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESSK 300 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+RIV+E+K++A + + N LY +T+L+ +FG+NM+A+ G+P+ + +KDII + + Sbjct: 301 EGIRIVLELKKNADVKNLENLLYKKTKLEDTFGVNMLAIVDGRPETLGIKDIIKHHINFQ 360 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 E+ TR+ L K + I E L A ID IIE++R + AK LV G Sbjct: 361 YELATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVN-----G 415 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 NV + ++ + L+ TE+QA AIL++RL KL GLE L EY Sbjct: 416 NVEGIKFKSEQSKKQAAGLD-----------FTERQAGAILEMRLYKLIGLEILNLQKEY 464 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 E + +I + +ILGS + +VI+ +L +++++G +RRT I A + E I + + Sbjct: 465 DECVKKIEKYEKILGSRKEMAKVIKADLLNIKKEYGVERRTVIEDGEAAVFEEKKIPEME 524 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V+ + GY + ++ +E + A E ++ + V NT D I F+ G Sbjct: 525 VMFIMDRFGYARTIDMAAFERNK-------DAVFNENKYV--IPVMNT-DKICIFTDTGD 574 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE--EGVKVFMATANGTVK 656 ++ +K+ LP +G PI NL + + I I+ +T FE + K+ T G +K Sbjct: 575 LHQLKIKDLPFTKFRDKGTPIDNLCNYDSSKEI--IVYITPFERLKNQKMLFVTRQGMMK 632 Query: 657 KTVLTEFN-RLRTAGKVAIKLVDGDELIGVDLTSGEDEVML-FSAEGKV----------- 703 EF RT KL D D+LIG+ T E+ FS +G++ Sbjct: 633 LVDSEEFQVAKRTVA--CTKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQN 690 Query: 704 ----------VRFKESSVRAMGCNTTGVRGIRLGEGDKVVS-LIVPRGDGAILTATQNGY 752 ++F + + + GVRGI+L + D + ++ GD T Sbjct: 691 VIVQTENGVFLKFPLTDIPMKKKSAVGVRGIKLSKDDYIEDVFLLTEGD----EFTMEYK 746 Query: 753 GKRTAVAEYPTKSRATKG 770 GK + A+ T R TKG Sbjct: 747 GKSISFAKMKTAHRDTKG 764 >UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicutes RepID=Q2SS33_MYCCT Length = 899 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 280/776 (36%), Positives = 430/776 (55%), Gaps = 52/776 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSD EI +EE L + + YA +I RALPDVRDGLKPV RR+LYAMN L ++ Sbjct: 1 MSD-KSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFD 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVG+VIGKYHPHGDS++YD +VRM+Q + + LVD QGN GSIDGDSAAAM Sbjct: 60 KPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL KI++ L+ DLEK+TV F N+D +E P V+P+ PN+LVNG++GIA G AT Sbjct: 120 RYTEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+PPHNL+E+I+ + I + +I+I+ +++ + GPDFPT AII ++GI EA+ TG+GKV Sbjct: 180 NMPPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I ++ E + I++ EIPY+V K L++KI +++ GI +RDE+D+ G Sbjct: 240 IISSKWHQE------KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKG 293 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIVIE+ A E V L+ T L VS+ N + + QPK + L DII A++ H +E Sbjct: 294 LRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKE 353 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V +RT F L K R I++ L AL+ +D +I++IR + +A LV + Sbjct: 354 VFIKRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVIS------- 406 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + T Q+ AI+D+RL +LT + KLL E E Sbjct: 407 ---------------------------FNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTE 439 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLITQED 538 L+D+I + IL L I LE V++QFG KR++++ D++ +++I +++ Sbjct: 440 LIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKE 499 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + + +S GY+K + GK K D V + DH++ S + Sbjct: 500 INLWISKDGYIKVIDNNILNKNELSSFGK-----KPNDMWISQGVCSNLDHLILISDQAN 554 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK-VFMATANGTVKK 657 YS+ +Y++ + +G I ++ + +E I L + EF + + + T NG +K+ Sbjct: 555 YYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEFINSTQHLLLVTKNGLIKR 614 Query: 658 TVLTEF-NRLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRAMG 715 T +++ ++ +K+ D D L+ DL S + + + G VR+ + Sbjct: 615 TQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIVTKNGYAVRYNIEDIPIQS 674 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 + GV+ L + D+++S + + + I+ T K+ P R KG+ Sbjct: 675 TISKGVKAANLKD-DQIISALSLQTNKDIIIFTNKNNYKKIDQNLIPIYIRPKKGI 729 >UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipelotrichaceae RepID=D2MM14_9FIRM Length = 830 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 273/758 (36%), Positives = 430/758 (56%), Gaps = 45/758 (5%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E+ + + + YA +I RALPDVRDGLKPV RR+LYAM GN +K Y+KSA+ VG Sbjct: 18 LEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKSAKTVGL 77 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 VIG YHPHGDS+VYD +VRM+Q + +R +D GN GSID D AAAMRYTE RLAK+ Sbjct: 78 VIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPAAAMRYTEARLAKVTQ 137 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 + DL+K+TV+ N+D T+ P V+P P +LVNG++GIA G ATN+PPHN+ EVI+ Sbjct: 138 VMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHNINEVID 197 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 + I + + S+ +M+ +PGPDFPT I+ G GI EA+ TG+G++ +RA+ E+ + Sbjct: 198 ATIYRIQNAECSLNDVMDILPGPDFPTGGIVQGEEGIREAFTTGKGRIVVRAKTEI-IQE 256 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 K ++ I++ EIPY+V K L++K+ E+ + V+G+ +RDESD++G+RIVI+V++D Sbjct: 257 KNLQQ-IVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVIDVRKDVD 315 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 ++L + T LQV + N VA+ +P + L ++ AF+ R+EVV RR+ FEL K Sbjct: 316 ANLILQYFFKNTDLQVYYNYNNVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRSRFELNK 375 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 R HI+E L A++ +D +I +IR + A+AK L+ N Sbjct: 376 MEARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIEN------------------- 416 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 FG E QA+AI+ LRL +L+ + L +E+ +L++QI E IL Sbjct: 417 --------FG-------FDEVQAEAIVTLRLYRLSNTDIVSLRNEFAQLVNQIEETKSIL 461 Query: 493 GSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVK 550 + L ++ +EL V+E +GD RRT+I A +IN+ E +I E V++T+S GY+K Sbjct: 462 ENESVLRHLMVQELRQVKENYGDARRTKIEAKIDEINISKEAMIPSEQVMITVSKDGYLK 521 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 L + A R G +K D + NT D +L F+S+G + V+Q+ + Sbjct: 522 RVSLRSFNAVRDQETG-----LKTGDQLIGQREVNTLDTLLLFTSKGNYAMVPVWQIDDE 576 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG 670 G + L+ ++ +E++ + + V F+ + + T +KKT L+++ RT+ Sbjct: 577 KWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSYAWITLVTKGNKIKKTKLSDWKVERTSR 636 Query: 671 KV-AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 AI L + DE+ +T EV++ + +G +R + + + + GV+ +++ Sbjct: 637 LFKAINLEEKDEVCAAFMTYQSQEVLVVTKDGYALRMSQDQIPEVKA-SKGVQAMKVAFE 695 Query: 730 DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 D+V +L T KR + + RA Sbjct: 696 DEVAFATSVYSSDNLLFLTDTLQAKRIHLEDLRLSGRA 733 >UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIX4_9CHRO Length = 834 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 286/805 (35%), Positives = 440/805 (54%), Gaps = 73/805 (9%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I P+ + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+L+AM+ LG ++ Y+K A Sbjct: 20 IQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRKCA 79 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDV+GKYHPHGD AVYD +VR+ Q F+ R+ L+DG GNFGS+D D AAMRYTE RL Sbjct: 80 RVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRL 139 Query: 128 AKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A IAHE L+ ++ +TVDF N+DG+++ P V+P ++P LL+NG +GIAVGMATNIPPHN Sbjct: 140 APIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIPPHN 199 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV++ +A I D+S E L +PGPDFPT + G+ + YR GRG + +R A Sbjct: 200 LGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLSSGVRDTYRLGRGSIPMRGVA 259 Query: 247 EV-EVDAKTGRE---TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 + EV GR +++ E+PYQ++KA IEK+AE V + ++ GI+ +RDESD++GMR Sbjct: 260 HIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDREGMR 319 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +V+E++RDA + VL L +T LQ +FG ++AL +GQP ++L+ ++ F+ +R + Sbjct: 320 VVVELRRDANADTVLAELQRRTALQSNFGAILLALVNGQPVQLSLRRLLQEFLDYRELTL 379 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT LR+ DR ++E L AL + +I +I A A A+ +L Sbjct: 380 IRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVR--------- 430 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 L+E+QA A+L + L++LTGLE E L E +EL Sbjct: 431 -------------------------LDLSERQADAVLAMPLRRLTGLEQESLRQESEELR 465 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI-------------- 528 + L +L D L+E + E +++++G RRT + D+ Sbjct: 466 TERTRLRHLLDDRDSLLEAMVAEFRALKKRYGTPRRTRLVEGGDDLVAQRAAAARPNAEL 525 Query: 529 ----NLEDLITQEDVVVTLSHQ-GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLV 583 LE L + V++ V Q L + G+ A + LL Sbjct: 526 QRQQALEALASDSRVLIQADRAVKIVTPQVLGRLHLEEPAPLGEHPAPAQ------LLLT 579 Query: 584 ANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTE-FE 641 + +L F++ GRV ++ ++ G + P+ LP + + +LP+ E + Sbjct: 580 VASQPQVLAFTTDGRVAVLR-WEFA----GQQPGPLERFLPDSLEGASVMQVLPLQEGSD 634 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEG 701 + + + +++G K+ L + L +KL +G L V E+++ S+ G Sbjct: 635 PHLSIGLLSSDGRFKRLPLDDLQDLSGRAATVLKLKEGVTLQRVVPCRSGAELVVASSTG 694 Query: 702 KVVRFK--ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 759 +++R + E V MG G +RL +++V G++L A++ G K+ AV Sbjct: 695 RMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVPASGSVLLASRQGQVKKLAVE 754 Query: 760 EYPTKSRATKGVISIKVTERNGLVV 784 R G+I I+ ++R +V Sbjct: 755 SLRRCERGDLGLIGIRFSQRGDALV 779 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 20/187 (10%) Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 LS G K PL + Q G+ + ++KE + R++ + ++ SS GR+ + Sbjct: 642 LSSDGRFKRLPLDDL--QDLSGRAATVLKLKEGVTLQRVVPCRSGAELVVASSTGRMLRL 699 Query: 603 KVY--QLPEATRGARGRPIVNLLPLEQDERI--TAILPVTEFEEGVKVFMATANGTVKKT 658 + Q+P R A+G ++ LLP DE+I A +P + V +A+ G VKK Sbjct: 700 EANEEQVPLMGRTAQGPVLMRLLP---DEQIVGAACVPASG-----SVLLASRQGQVKKL 751 Query: 659 VLTEFNRLRTA--GKVAIKLVD-GDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRAM 714 + R G + I+ GD L+ L+SGE V + + E + R S+ Sbjct: 752 AVESLRRCERGDLGLIGIRFSQRGDALVA--LSSGEHPLVAVLAGENRSARLSSGSLALE 809 Query: 715 GCNTTGV 721 N +G+ Sbjct: 810 DANGSGL 816 >UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphaproteobacteria RepID=A8LLG0_DINSH Length = 777 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/612 (44%), Positives = 372/612 (60%), Gaps = 47/612 (7%) Query: 19 SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 78 + YL YA+S I+ RALPD RDGLKPVHRR+LYAM L ++KSA++ GDV+G YH Sbjct: 33 ARYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGDVMGNYH 92 Query: 79 PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 138 PHGD+A+YD + R+AQ F++RY LVDGQGNFG+IDGD+ AA RYTE RL A LM L Sbjct: 93 PHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTAAAEALMEGL 152 Query: 139 EKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYI 198 + VDF DNYDGT P+V+P PNLL NGSSGIAVGMATNIPPHNL E+I+GCL I Sbjct: 153 AENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATNIPPHNLHELIDGCLHLI 212 Query: 199 DDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRE 257 + E L+E IPGPDFPT I+ + I +AY TGRG +RAR E D G+ Sbjct: 213 RAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAFRLRARWARE-DLGRGQW 271 Query: 258 TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG-EVV 316 I++ EIPYQV K++LIEKIA+L++ K+V ++ +RDES D +RI++E + V EV+ Sbjct: 272 QIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDES-ADDVRIILEPRSKNVDPEVL 330 Query: 317 LNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARD 375 + L+ ++L+ F +NM L G+ PK+ +L++++ AF+ HRR+V+ RR+ L K Sbjct: 331 MGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLRAFLDHRRDVLGRRSRHRLAKIDH 390 Query: 376 RAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPE 435 R +LE VA N+D +I++IR+ P K AL+ W L +V RA D+A + Sbjct: 391 RLEVLEGFLVAFLNLDRVIDIIRYDEDP---KAALMREDWSLKHV-----RATDEA---D 439 Query: 436 WLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSA 495 + P G + LTE QA+AIL++RL+ L LE +L+ E L+ + AEL +L Sbjct: 440 YKTPAPGEGE----LTEVQAEAILNMRLRSLRRLEEMELISERDALMAERAELEDLLADE 495 Query: 496 DRLMEVIREELELVREQFGD-----KRRTE--ITANSADINLEDLITQEDVVVTLSHQGY 548 I +EL VR+QFG KRRT+ + A+++LED+I +E + V S G+ Sbjct: 496 ALQWARIADELREVRKQFGKGTALGKRRTDFAVATEMAEVSLEDMIEREPITVVCSKMGW 555 Query: 549 VKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 + R KG A + K+ D + A T D +L F + GR Y++ Sbjct: 556 I------------RAMKGHVALDQALKFKDGDEGRFIFHAETTDKLLAFGANGRFYTLSC 603 Query: 605 YQLPEATRGARG 616 LP G RG Sbjct: 604 AALP----GGRG 611 >UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial, putative n=5 Tax=Magnoliophyta RepID=B9SK06_RICCO Length = 540 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/388 (57%), Positives = 291/388 (75%), Gaps = 3/388 (0%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + +E +Y+ YAMSV++GRALPDVRDGLKPVHRR+L+AM+ LG K +KK ARVVG+ Sbjct: 114 LHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 173 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 V+GK+HPHGDSAVYD +VRMAQ FSLR L+ G GNFGSID D AAMRYTE RL + Sbjct: 174 VLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPPAAMRYTECRLEALTE 233 Query: 133 E-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 L+ADLE +TVDFV N+D ++K P ++P ++P LL+NGSSGIAVGMATNIPPHNL E++ Sbjct: 234 AVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNLGELV 293 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE-V 250 + A I + + +++ L+E++PGPDFPT +I G GI EAYRTGRG++ +R + EVE + Sbjct: 294 DVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGRGRIIVRGKTEVESL 353 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 D+KT R +I+ EIPYQ NKA L+EKIAELV+ K ++G+S +RDESD+ GMRIVIEVKR Sbjct: 354 DSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDESDRSGMRIVIEVKRG 413 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 + +VLNNLY T LQ SF NMV + GQPK M LKD++ A R VV RR F+L Sbjct: 414 SDPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKDLLQASY-FRCSVVERRARFKL 472 Query: 371 RKARDRAHILEALAVALANIDPIIELIR 398 +A++R HI+E + + L N+D +I +I+ Sbjct: 473 LQAQERRHIVEGIVIGLDNLDGVIRIIK 500 >UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=cellular organisms RepID=Q7V9E4_PROMM Length = 829 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 289/795 (36%), Positives = 443/795 (55%), Gaps = 65/795 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P+ + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+L+AM+ LG ++ Y+K A Sbjct: 6 LQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRKCA 65 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDV+GKYHPHGD AVYD +VR+ Q FS R+ ++DG GNFGS+D D AAMRYTE RL Sbjct: 66 RVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTETRL 125 Query: 128 AKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A IAH L+ ++ +ETVDF N+DG+++ P V+P ++P LL+NG SGIAVGMAT+IPPHN Sbjct: 126 ASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIPPHN 185 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV++G +A I D+S + L+ IPGPDFPT I GI E Y GRG + +R A Sbjct: 186 LGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMRGVA 245 Query: 247 EVE-VDAKTGRE---TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 VE + GR ++V E+PYQ++KA IEK+A+LV ++ GI+ +RDESD++GMR Sbjct: 246 HVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDREGMR 305 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IV+E++RDA E VL +L+ +T LQ +FG ++AL +GQP+ ++L+ ++ F+ +R V Sbjct: 306 IVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYRELTV 365 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT L K + R ++E L AL + +I +I+ A A A+ L+ Sbjct: 366 IRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQ--------- 416 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 L E+QA A+L + L++LT LE L E KEL Sbjct: 417 -------------------------LDLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQ 451 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ------ 536 ++ +L +L + + ++EV+ +EL ++++F + RRT + D+ E Q Sbjct: 452 EKQEQLQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDLVAERAANQRPNAEV 511 Query: 537 --EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVA-NTHDH 589 + + L G + Q S+ + G+ A ++ + RL++ Sbjct: 512 QRQQALSALPSDGRILIQQDSQVKVMSPQILGRLHLNEACKLSDGPSPARLILPIEPAPR 571 Query: 590 ILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP--LEQDERITAILPVTEFEEGVKVF 647 +L ++ GRV ++ ++ G+ R LP LE+ E + I P+ ++ + + Sbjct: 572 LLAVTNNGRVALVR-WEFAGQQPGSLER----FLPGGLEK-ETLINIFPLP-VDQNLSLG 624 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF- 706 + +++G K+ + E L +KL DG L + D+V+L S G+V+R Sbjct: 625 LLSSDGRFKRLPIEEVMELSGRAATIVKLKDGVILKSAFICKANDDVILASNIGRVIRIN 684 Query: 707 -KESSVRAMGCNTTGVRGIRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAVAEYPT 763 S+ MG G +RL + VV + P + +L AT+ G + V+ Sbjct: 685 VNNDSMPLMGKLAQGPMTMRLLPEEMVVGAVSCPPNCESTVLLATRLGKFAKILVSSIRI 744 Query: 764 KSRATKGVISIKVTE 778 R G I + + + Sbjct: 745 CQRGDLGEIGLTIKD 759 >UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria RepID=PARC_SYNY3 Length = 920 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 237/521 (45%), Positives = 336/521 (64%), Gaps = 40/521 (7%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I P ++ EE++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM LG ++ ++K Sbjct: 10 QIIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKC 69 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGD +VYD +VRM Q FS RY L+ G GNFGS+D D AAMRYTE R Sbjct: 70 ARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 129 Query: 127 LAKIAHELMAD-LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 LA IA M + + + VDF N+D +++ P V+P ++P LL+NG SGIAVGMAT+IPPH Sbjct: 130 LAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPH 189 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL EV++G + I+ D+S + L + IPGPDFPT I GI +AY+TGRG + +R Sbjct: 190 NLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQAYQTGRGLIPVRGV 249 Query: 246 AEVEV-----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + +E R I++ E+P+QVNKA IEKIA LV + +++GIS LRDESD+ G Sbjct: 250 SHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTG 309 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MR+VIE+KRDA +L LY T LQ +FG+ +AL + QP M+L+ I+ F++ R + Sbjct: 310 MRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMSLRQILQEFLQFRED 369 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + R+ EL + R R +L L + L N+D +IE++R A A+ TA + Sbjct: 370 TLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFA---ADGTTAKIQ-------- 418 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ER G ++ QQ AIL + ++++TGLE EKL E+ + Sbjct: 419 --LQERLG---------------------ISLQQGDAILGMPMRRITGLEREKLQQEHTD 455 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI 521 L +I +L ++G ++ +++EL ++++F D+RRT+I Sbjct: 456 LAQRIEQLETLIGDRQERLKALKKELRGLKKKFADERRTKI 496 >UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myxococcales RepID=Q1D9G9_MYXXD Length = 813 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 277/778 (35%), Positives = 431/778 (55%), Gaps = 64/778 (8%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-YKKSAR 68 P ++ +E + Y++YA+SVI RALPDVRDGLKPV RR+L+ M ++A Y+KSA+ Sbjct: 57 PASLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSAK 116 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VVG V+G+YHPHGD+++Y+ +VRMAQ FSLRY LVDG GNFGS+DGD AAAMRYTE RLA Sbjct: 117 VVGSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRLA 176 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 ++ EL+ +L K+TV F YDGT + P V+P ++P LL+NG++GIAVGMATNIPPH+L Sbjct: 177 MLSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHLG 236 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAE 247 E+++ +A I++ + + L++ + GPDFPT I+N ++ + + Y +G+G + IR + Sbjct: 237 ELVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEYK 296 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E D K G + I++ IPY VNK+ L+ K +LV+E+++ I+ +RDES KD +RIV+E+ Sbjct: 297 LE-DLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKD-VRIVLEL 354 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVAL-------HHGQPKIMNLKDIIAAFVRHRRE 360 K+DA E+V+ LY QT LQ +FG+N+ L P+ +NL+DI+ F+ R + Sbjct: 355 KKDANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFD 414 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVT+R EL + R HILE +D +I++IR + +A L+A Sbjct: 415 VVTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIAR------- 467 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + L E Q AIL+++L KL LE + E KE Sbjct: 468 ---------------------------FKLDEAQVDAILEMKLYKLARLEILVVEKELKE 500 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA---DINLEDLITQE 537 +I + IL +++ +R+EL ++ ++ DKRRT I + + + E I E Sbjct: 501 KRAEIKRIQGILKDKNKVWGTVRDELGEMKARYNDKRRTRIGGAGSEEMEFSAEAFIADE 560 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 D V ++ G+VK + R K S R++E D + +L + +++ FS+ G Sbjct: 561 DAHVVITRDGWVK---------RVREVKDPSTTRLREGDAVMAVLAGSLKANLVLFSNFG 611 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV-TEFEEGVKVFMATANGTVK 656 Y + +P +T G P+ + ER+ + L + K+ T G Sbjct: 612 TAYVTRFNDVPAST--GYGEPVQKFFKFDDGERVVSALSLDARLPRPQKLVGVTKQGMGM 669 Query: 657 KTVLTEFNRLRT-AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 + +L + T AG+ K +GDE+IGV + D + + + + + K + V + Sbjct: 670 RFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNELA 729 Query: 716 CNTTGVRGIRLGEGDKVVSLIV---PRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 GV I++ GD+VV + + D + TQ G + A+Y R KG Sbjct: 730 GPGKGVTVIKVDGGDRVVDFLAVSPAQKDAKLEFETQKGRKLHLSPAKYEVTGRGGKG 787 >UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SLW9_9CAUL Length = 738 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 291/767 (37%), Positives = 418/767 (54%), Gaps = 81/767 (10%) Query: 15 EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 74 E L YL YA+S I+ RALPDVRDGLKPVHRRVLYAM+ + + A +KSA+VVG+V+ Sbjct: 20 EALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAAARKSAKVVGEVM 79 Query: 75 GKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 134 G +HPHGD ++YD +VRMAQ F+ RY +VDGQGNFG+IDGDSAAAMRYTE ++ A L Sbjct: 80 GNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDGDSAAAMRYTECKMTTAAMLL 139 Query: 135 MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 194 + +++ VDF YDG ++ P V+P PNLL NG++GIAVGMAT+IPPHN+ E+I+ C Sbjct: 140 LDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSIPPHNVAELIDAC 199 Query: 195 LAYIDDEDISIEGLMEHIPGPDFPTAAIINGRR-GIEEAYRTGRGKVYIRARAEVEVDAK 253 I + + GLM IPGPDFPT I RR I EAY TGRG V +RAR EVE D Sbjct: 200 KLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVRVRARYEVE-DLG 258 Query: 254 TGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK-RDAV 312 G I+V EIPYQV K+RLIE++A+L++ K+ + +RDESD++ +R+++E K R+ Sbjct: 259 RGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEE-VRLILEPKTRNID 317 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 EV++ +L+ + L+ F NM L G P++M LK I+ +F+ HRREV+ R++ + L Sbjct: 318 PEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRREVLIRQSQWRLD 377 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 K R H+L+ L +A N+D +I +IR TP K L+A Sbjct: 378 KIEKRLHVLDGLMIAFLNLDEVIRIIREDETP---KQTLMAR------------------ 416 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 + LTE Q ILD RL++L LE + E+ +L + LL + Sbjct: 417 ----------------FELTEVQVDYILDTRLRQLARLEEMAIKGEHDKLSKERDGLLSL 460 Query: 492 LGSADRLMEVIREELELVREQFGDKRRTEITANSADIN---LEDLITQEDVVVTLSHQGY 548 LGS + + I E+L VR+Q RRT + +E + +E + V LS +G+ Sbjct: 461 LGSEKKQWKRIDEQLTEVRKQLLSARRTTFAEAPQGVEVAAIESYLPKEALTVILSERGW 520 Query: 549 VKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 + R KG+ S + KE D + L+ D +L +S GR +++ Sbjct: 521 I------------RATKGRVDDPSELKFKEGDNLGFLVPGYNTDKLLIMTSDGRFFTLGC 568 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 +LP RG G P+ +L +E++ RI + F G K M + NG V+ E + Sbjct: 569 DKLPSG-RG-HGEPLQLMLEMEENTRIVNVF---MFTPGAKRLMVSKNGY--GFVMNEED 621 Query: 665 RL--RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKES---------SVRA 713 + + AGK + DG E V L D V++ KV+ + S V+ Sbjct: 622 AVGNKKAGKSVLN-ADGTEAF-VALPVTGDHVVILGENNKVLVYPVSELPEMARGKGVKL 679 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 760 G GV+ I + + V G ++ GKR +V + Sbjct: 680 QGYKDGGVKDIAIFDQAGPVQWFDGSGKARDFKDWKDFVGKRASVGK 726 >UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula baltica RepID=Q7UU73_RHOBA Length = 825 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 287/804 (35%), Positives = 436/804 (54%), Gaps = 65/804 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L EI + + + YL+Y++SVI RALPDVRDGLKPV RRVLY M++L D + + Sbjct: 27 LLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSAKH 86 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 K A+VVGDV+GKYHPHGDS++Y+ +VRM+Q FSLR ++DG GNFGSIDGD+AAAMRYT Sbjct: 87 SKCAKVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMRYT 146 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E R+ IA E++ADL TV F NYDGT + P V+P+++P+LLVNG++GIAVGMATNIP Sbjct: 147 ECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIP 206 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLM--EHIPGPDFPTAA-IINGRRGIEEAYRTGRGKV 240 PHNL EV N L + + +I L+ + I GPDFPT I N + + E Y TG G + Sbjct: 207 PHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTI 266 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R AEV ++TG +T+ + EIP+ VNKA ++E+IAELV ++ + +RD S +D Sbjct: 267 KLRGVAEVAEKSRTG-DTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTED- 324 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH------GQPKIMNLKDIIAAF 354 +R+ + +K++A + VL LY T LQ +F +N+ L G PK + LK+I+ F Sbjct: 325 IRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYF 384 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 + R +V+T R ELR R HILE LA+ +D II++IR + A+A Sbjct: 385 LHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADA-------- 436 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 +++R P + +G L +Q AIL+L+L +L LE + Sbjct: 437 -----AEKIMKRFPVKELTPAQARRKTRASNG---LDAEQTDAILELKLYRLARLEINVV 488 Query: 475 LDEYKELLDQIAELLRILG------SADRLMEVIREELELVREQFGD----KRRTEITAN 524 LDE K+ ++ E+ ++L ++ +I+EEL+ + +G+ +RR+ I Sbjct: 489 LDELKKKRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVP 548 Query: 525 SADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLL 582 + ++ ED I ED V ++ G+VK Q + S +R+++ D + + Sbjct: 549 TEEVEYTEEDFIVAEDCHVMVTVDGWVKRQ---------KQIADPSKSRLRQGDAVLACV 599 Query: 583 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAIL------- 635 NT + FSS G Y+ ++ +P +T G PI L + ERI A L Sbjct: 600 AGNTRTTLAFFSSLGVCYTARMIDIPAST--GFGEPIQKLFKFKDGERIIAALSMDPRIL 657 Query: 636 ------PVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-AGKVAIKLVDGDELIGVDLT 688 P + A+ +G + L F T AG+ ++ G ++ V Sbjct: 658 GDISEDPKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPI 717 Query: 689 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTAT 748 +G + V+ SA+ + + + + GV ++L DK++ GD +L Sbjct: 718 AGTETVLAVSADARAMVCPADEINYLSGAGKGVLLLKLAASDKLLGFKPSTGDRDLLNVV 777 Query: 749 QNGYGKRT-AVAEYPTKSRATKGV 771 N K+T + A+Y T SR +G+ Sbjct: 778 TNRGAKKTVSTAKYRTTSRGGRGI 801 >UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsia RepID=PARC_RICBR Length = 736 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 259/607 (42%), Positives = 362/607 (59%), Gaps = 58/607 (9%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I ++ L YL YA+S I+ R+LPDVRDGLKPVHRR+LYAM L + N YKK Sbjct: 5 KIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKC 64 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDVIGKYHPHGD AVYDT+VR+AQ FSLRY L+DGQGNFGSIDGD+AAAMRYTE R Sbjct: 65 ARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTESR 124 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + +I LM D++K+TVDF YD ++ P +MP PNLL NGS GIAVGMATNIPPHN Sbjct: 125 MTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPHN 184 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYRTGRGKVYIRAR 245 L E+ + + ID I +M I GPDFPT II + I AY TGRG +RAR Sbjct: 185 LHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVRAR 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E E + G I+V EIPYQV K++LIE+IA L+K+K++ +S +RDES D +R+VI Sbjct: 245 WEKE-ELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRLVI 302 Query: 306 EVK-RDAVGEVVLNNLYSQTQLQVSFGINM-VALHHGQPKIMNLKDIIAAFVRHRREVVT 363 E + R ++V+ +L+ T L+ +NM V + PK+MN+ +++ F+ HR+ ++T Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNIIT 362 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ + L K + R ILE L +A N+D II++IR P A M Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPK----------------AIM 406 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 ++R + LTE Q +AIL+ RL+ L LE ++++ E+ L Sbjct: 407 MQR---------------------FQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQK 445 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFG-----DKRRT---EITANSADINLEDLIT 535 Q A L IL + L +V+++E++ V+ +FG RRT ++T + +++ IT Sbjct: 446 QQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFIT 505 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 +E + + S G+V+ + + S+ + KE D +L A T D IL SS Sbjct: 506 KEPITIICSKMGWVR--------SLKGHNNDLSSIKYKEGDAEKFILEAYTTDKILIISS 557 Query: 596 RGRVYSM 602 GR +++ Sbjct: 558 EGRFFTL 564 >UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=Prochlorococcus marinus RepID=A2BND1_PROMS Length = 813 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 222/484 (45%), Positives = 316/484 (65%), Gaps = 39/484 (8%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + T ++++EE++ SYL+YAMSVIVGRALPD RDGLKPV RR+++AM LG +K ++K Sbjct: 4 KNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPFRK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 ARVVGDV+GKYHPHGD AVYD +V++ Q FS +Y +DG GNFGSID D AAMRYTE Sbjct: 64 CARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRYTET 123 Query: 126 RLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLA IAH+ + ++ ETV+F +N+DG++K PDV+P ++P LL+NGS+GIAVGMATNIPP Sbjct: 124 RLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNIPP 183 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+++G + + ++DIS + L I GPDFPT + R IEE Y+TG+G + IR Sbjct: 184 HNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRAIEELYQTGKGSITIRG 243 Query: 245 RAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 E K + II+ E+PYQ+NKA IEK+AELV ++ GIS +RDESD+DG Sbjct: 244 VINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDRDG 303 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+K+D+ E+V++NLY +T LQ +FG +AL G+P +NLK + F+ R E Sbjct: 304 MRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKKYLNYFLEFREE 363 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + +RT + L+ D+ I E L+ A +I +I +I + +A++ LV Sbjct: 364 TIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEK------- 416 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ++L+E+QA ++LD+ L+KLT LE ++ +E K Sbjct: 417 ---------------------------FFLSEKQANSVLDMPLKKLTNLEKNQIDNEIKN 449 Query: 481 LLDQ 484 L ++ Sbjct: 450 LAEK 453 >UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=uncultured bacterium RepID=C5JAG1_9BACT Length = 765 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 294/793 (37%), Positives = 441/793 (55%), Gaps = 75/793 (9%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 A +I P I EL+S YL YA+S I+ R+LPDVRDGLKPVHRR+L+AM L D +K Sbjct: 6 AEKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFK 65 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSARVVGDVIGK+HPHGD A YD +VR+AQ F+ RY LVDGQGNFG++DGD AAAMRYTE Sbjct: 66 KSARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAMRYTE 125 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL +A L+ DL+++TVD + YDG+++ P V+P + PNLL NG++GIAVGM+T IPP Sbjct: 126 ARLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIPP 185 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIR 243 HN EV+ L I D + LM+H+PGPDFPT ++ + E Y TGRG + +R Sbjct: 186 HNAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRLR 245 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 AR E E+ G ++V EIPY V K RLIE+IA+L+ +++ +S +RDESD +RI Sbjct: 246 ARWEQEM-VGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAK-VRI 303 Query: 304 VIEVK-RDAVGEVVLNNLYSQTQLQVSFGINM-VALHHGQPKIMNLKDIIAAFVRHRREV 361 V+E + R E ++ L+ + L+V +N+ V +P++M+LK ++ A++ HR +V Sbjct: 304 VLEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQV 363 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 TRR +L + R+R H+L+A NID +I +I+ PA Sbjct: 364 HTRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPA----------------P 407 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 A+++R G D+ +QA+A+L+LRL+ L LE + E E Sbjct: 408 ALMQRFGMDS---------------------EQAEAVLNLRLRALRRLEEMSIRKEMGEK 446 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDV 539 + AEL +L + +++E++ R++F D RRT + + +I+L EDLI +E + Sbjct: 447 EARAAELSAMLADPTLMWAAVQDEVKRTRKEFSDGRRTRMAGPAPEIDLRPEDLIQKEPL 506 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 LS +G++K + + ++ R KEED ++R + +H + ++ G+V Sbjct: 507 TAVLSRKGWIKALKGHDIDLEK--------IRFKEEDGLERAVKGYSHQTVTFLAASGKV 558 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 YS+ +LP R G P+ L L+ +RI +L V EG + F+ T G + Sbjct: 559 YSLLGDRLPSGKR--FGEPLTVLFELDPGDRILWMLAVD--PEG-EYFVTTRLGQGFRIR 613 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGK---VVRFKESSVRAMGC 716 + + GK + L +GD+ + V G + + G+ + R +E + G Sbjct: 614 GRDLVANQRTGKQVVSLREGDQPLHVHPVRGAAVAAI--SHGRRLLICRLEEFPLLGRG- 670 Query: 717 NTTGVRGIRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISI 774 GVR LG G+ +V + P+ G +L + GKRT K + T+G S Sbjct: 671 --KGVRIQNLGRGEGLVDAMTFDPQA-GLVLDS-----GKRTRQLTELDKWQGTRG--SR 720 Query: 775 KVTERNGLVVGAV 787 +G + GAV Sbjct: 721 GAMLPHGFLGGAV 733 >UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma RepID=A5IXX2_MYCAP Length = 861 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 270/808 (33%), Positives = 437/808 (54%), Gaps = 49/808 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 ++DL +I N++ + + Y+ VI RALPDVRDGLKPV RR+LY+M LG N Sbjct: 9 LNDLLSKIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNN 68 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K +KKSARVVGDVIGKYHPHGD+++YD +VRM Q + + + LV+ GN GSID D AAAM Sbjct: 69 KPFKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAM 128 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+RL++IA+ ++ D+ K TV F N+D +EK P VMP IPNLL+NGS+GIA G AT Sbjct: 129 RYTEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFAT 188 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +PPHNL E+++ +A + + I + L + I GPDFPT II G GI EA+ G+G++ Sbjct: 189 EMPPHNLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGGIIYGTEGIHEAFERGKGRI 248 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + +R V D+K + I + EIPY V K++L+ +I +V + V G+ ++D++D++G Sbjct: 249 TLASRYNVYTDSK--YKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNG 306 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+I + ++A V++N L+ +TQ+++ + N V + + PK + + ++ A+++H ++ Sbjct: 307 INILITLDKEADENVIVNYLFLKTQMRIYYNYNNVVIDNYTPKTLGISALLDAYLKHVKD 366 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + + F+L K + R I+ D +IE+IR + + Sbjct: 367 IKIKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSKQ--------------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGL---YYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 GV D L + T QA AI +LRL KL+ + L E Sbjct: 412 ---------------------GVIDNLMSAFDFTLNQATAIAELRLYKLSKTDEHAFLIE 450 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS--ADINLEDLIT 535 +EL ++I + +L +D + + + ++ +FG RRT I A IN EDL+ Sbjct: 451 KEELEEKIKQCELLLNDSDEFNKYLIALFKDLKSKFGRARRTSIENEQIKASINQEDLVK 510 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 +E V + +S GY+K YE+ G IKE+D I A++ D +L F++ Sbjct: 511 EEQVFLGISKFGYIKKVSKKIYESNLINTYG-----IKEDDNILFYDNASSLDKLLLFTN 565 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 G + V+++ E+ G + + + L E + + + V++F+ V + T G Sbjct: 566 FGNYAYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVSAIKVSDFDSSNYVCLFTKKGQG 625 Query: 656 KKTVLTEFNRLRTAGK-VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 KK +L EF+ R + VA+KL DELIG L++G +V+L + + E+ V Sbjct: 626 KKVLLKEFDVSRFSKTFVAMKLKSDDELIGAKLSNGLKDVLLITKNNFASLYSENEVPIY 685 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISI 774 G + G + L D++ + V + +++ N K V+E S+A KGV Sbjct: 686 GLKSNGNKACYLANYDELSAFAVVSSNDSVVLINANNRAKVVNVSEITKVSKANKGVALF 745 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAG 802 + N + + +I+++ + G Sbjct: 746 AKSRTNSPIKQCDSLQASSKILIVNNQG 773 >UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rhodothermaceae RepID=Q2S2H4_SALRD Length = 777 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 278/803 (34%), Positives = 426/803 (53%), Gaps = 90/803 (11%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM-NVLGNDWNKAYKKSARV 69 + + E + YL+YA+SVI RALPD+RDGLKPV RR+L+AM + L +K ++KSA V Sbjct: 7 IPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSATV 66 Query: 70 VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 129 VG+ +GKYHPHGD A+YD +VRMAQ FSLR LVDG GNFGS+DGDSAAAMRYTE +L Sbjct: 67 VGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKLQP 126 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 +A E++ L ETVD+ DN+DG+ + P V+P ++PNLLVNG+SGIAVGMATNIPPHNL E Sbjct: 127 LAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNLGE 186 Query: 190 VINGCLAYIDDEDISIEGLM-EHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAE 247 V++ L I++ ++ L+ +HI GPDFPT I+N + + E Y TG G + +R Sbjct: 187 VVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGAYR 246 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 + G+ I+ +PY V+K++++E+IA+ + E+ V +S +RDES D +RIV+E+ Sbjct: 247 TK-----GKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDES-TDDVRIVLEL 300 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ------PKIMNLKDIIAAFVRHRREV 361 KR + E + L+ T+LQ F +N+ L + PK ++L+ I+ F+ R +V Sbjct: 301 KRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLDV 360 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 VTRR EL + R HILE +D IE+IR + A+A L+ Sbjct: 361 VTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR-------- 412 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + L E+Q AIL+ +L KL+ +E E + DE E Sbjct: 413 --------------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELGEK 446 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDV 539 + + R+L D ++++EL+ +R+++ D+RR+ + AD+ ED I EDV Sbjct: 447 RARAEGIRRLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPGADMEYTEEDYIVDEDV 506 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGK-SAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V ++ G+VK R+G A R ++ D + L +T + F++ G Sbjct: 507 HVIVTRDGWVK----------RQGTYSDLDAIRTRDGDEVGWALAGSTRATVGFFTNYGT 556 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAI-----------LPVTEFEEG---- 643 Y+ ++ ++P T G P+ L + E + + +P E+G Sbjct: 557 CYTTRITEIPSTT--GYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFD 614 Query: 644 ---------VKVFMATANGTVKKTVLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDE 693 V + G + L + + G+ ++L DGDE+ V L G++ Sbjct: 615 PDDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDEN 674 Query: 694 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSL-IVPRGDGAILTATQNGY 752 + L S +G+ + F V GVR IRL + D+V+ + R + T NG Sbjct: 675 ICLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDRVLDFALSTRARDGLTVETNNGR 734 Query: 753 GKRTAVAEYPTKSRATKGVISIK 775 + ++ +R KG + IK Sbjct: 735 EEIVRTTKFDATNRGAKGTLVIK 757 >UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_ECOLX Length = 211 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/211 (99%), Positives = 210/211 (99%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSARVVGDVIGKYHPHGD AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH 211 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH Sbjct: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH 211 >UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z3_MYCS5 Length = 860 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/725 (34%), Positives = 404/725 (55%), Gaps = 46/725 (6%) Query: 24 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 83 Y+ VI RA+PDVRDGLKPVHRR+LY+M LG D++K +KKSAR+VGDVIGKYHPHGD+ Sbjct: 26 YSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDKKFKKSARIVGDVIGKYHPHGDT 85 Query: 84 AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 143 +VY+ ++ +AQ + + L+ GN GSID D AAMRYTE++LAKIA+ ++ D++K+TV Sbjct: 86 SVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQAAMRYTEVKLAKIANYIIGDIKKKTV 145 Query: 144 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 203 F+ N+D +E P V+P+ PNLLVNGS GIA+GMAT +PPHNL E+I+ C+ I Sbjct: 146 KFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATEMPPHNLGEIIDACVYKIKHPKA 205 Query: 204 SIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG-KVYIRARAEVEVDAKTGRETIIVH 262 S L + GPDFPT +I G +GI EA GR K I+ + E+ K + I + Sbjct: 206 SYSELSNFVLGPDFPTGGVIKGTKGIAEALENGRNEKNKIKLFCKYEIYTKGKNKFIEIT 265 Query: 263 EIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYS 322 EIPY V K +L+ +I +++ K ++GI ++D SD+DG+ I+I + ++ E +LN L+S Sbjct: 266 EIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDGINILITLDINSNEESILNYLFS 325 Query: 323 QTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEA 382 +TQ+Q+++ N + + + P +MNL+++I++++ H + V T ++L KA+ R I+ Sbjct: 326 KTQMQITYSYNNIVIDNNSPTLMNLENLISSYIAHIKNVKTLSLNYDLNKAKVRLEIING 385 Query: 383 LAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFG 442 +IELIR +K +V N Q+ N Sbjct: 386 FIKVSEITSQVIELIRKTQG---SKMGVVNNLIQVFN----------------------- 419 Query: 443 VRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 502 T+ QA++I +LRL KL+ + E L E E+ + I + +L + + Sbjct: 420 -------FTKLQAESIAELRLYKLSQTDKEIYLKEKVEVKETINIIENLLNNEKEFNNFL 472 Query: 503 REELELVREQFGDKRRTEITANSADI--NLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQ 560 E++ ++++F R+T+I ++ N DL+ +E + V++S G++K S+ + Sbjct: 473 INEIKAIKKEFSVPRKTQIEEKDFEVSYNKLDLVKEEIINVSISKNGFIK--RFSDKVLE 530 Query: 561 RRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIV 620 K + +KE+D + NT + +LCF++ G + +YQ+ E G I Sbjct: 531 NNEWKNYA---LKEKDNLVFFSKVNTVNFLLCFTNLGNYVIVAIYQIQEVKWKDLGNNI- 586 Query: 621 NLLP--LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK-VAIKLV 677 NL + DE I +++ V++FEE + V + T G K+ +L +F R K A+ L Sbjct: 587 NLFASDIRPDEEIVSVIEVSDFEENLSVMLGTKQGYFKRVMLKDFLVSRFTKKYTAMPLN 646 Query: 678 DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSL-I 736 + D LI LT+ + ++ + + +F ES + G + I GDK+ + I Sbjct: 647 EDDYLIKAKLTNLDSYLVAITENSIISKFSESEIMFYSTKARGSKAIYFSVGDKLSNFTI 706 Query: 737 VPRGD 741 GD Sbjct: 707 ASYGD 711 >UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Actinomycetales RepID=D1BTH4_XYLCX Length = 855 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 303/829 (36%), Positives = 429/829 (51%), Gaps = 105/829 (12%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I +++ E++SS+L+YA SVI RALPD RDGLKPV RR+LY M +G ++ Y KS Sbjct: 16 KIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMADMGLRPDRPYVKS 75 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 +RV+G+V+GK HPHGD A+YD +VR+AQ FSLR LVDG GNFGS+D D AA RYTE R Sbjct: 76 SRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLD-DGPAAPRYTEAR 134 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 LA + + A L+++ VDFV NYD P+V+P+ IPNLLVNG+SGIAVGMATN+ PHN Sbjct: 135 LAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGIAVGMATNMAPHN 194 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV+ + + ++E +M +PGPD PT I G GI +AYR+GRG RA A Sbjct: 195 LVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIVGLDGIRDAYRSGRGTFRTRATA 254 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRIVI 305 +E + R I + E+PY V +++EKIA+ VK K+++G++ ++D +D+ GMR+V+ Sbjct: 255 RIE-NITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDLTDRTHGMRLVV 313 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 EVK E VL LY T L+ SFGIN VAL GQP+ + L +++ +V HR EVV RR Sbjct: 314 EVKTGFDPEAVLEQLYRTTPLEDSFGINNVALVGGQPRTLGLLELLRVWVEHRIEVVRRR 373 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T + L K ++R H++E L +A+ +ID +I++IR + Sbjct: 374 TAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSS------------------------- 408 Query: 426 RAGDDA--ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 DDA AR ++ ++ L+E QA ILDL+L++LT +L E EL Sbjct: 409 ---DDAGIARARLMD--------VFDLSEPQATYILDLQLRRLTKFSRIELEKEQSELEK 457 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI-------------------TAN 524 +IA L ILGS L V+ E+ V +G RRT + Sbjct: 458 EIAALEEILGSDAVLRRVVSTEMGDVAATYGTPRRTVLLDSAGGATTSAAAAPGGARGRK 517 Query: 525 SADINLEDLITQEDVVVTLSHQGYVKYQP----------------LSEYEAQRRGGKGKS 568 A+I+LE I V LS G + L G G S Sbjct: 518 PAEISLE--IADAPTHVLLSATGLLARTAVAPAAAPTASEGDQLDLDGVALGAPGAPGAS 575 Query: 569 AA-----RIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE--ATRGAR----GR 617 A R D + ++ + I ++ GR+ + +LP T GA G Sbjct: 576 GAVSRHGRRHAHDALRGDVMTTSRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSGGI 635 Query: 618 PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV 677 P+ L+ L E A+ V+ ++ + + TA G VK+ ++ + V I L Sbjct: 636 PVSELVELAPGEEALAV--VSLADDAPTLALGTAGGVVKRVAASDVPSNKDEWTV-IGLK 692 Query: 678 DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV 737 DGD ++G +DEV+ S++ ++ + S+VR G G+ GI L G VV V Sbjct: 693 DGDSVVGAAPAGDDDEVVFISSDSSLLHYAASAVRPQGRAGGGIAGISLAAGQTVVFFGV 752 Query: 738 PR-------------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 R G L G K T YP K RAT GV S Sbjct: 753 ARAAVRPELTVVTVGGSAGQLPGVGGGSVKVTPYELYPGKGRATGGVRS 801 >UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pulmonis RepID=Q98QI8_MYCPU Length = 939 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 261/772 (33%), Positives = 421/772 (54%), Gaps = 56/772 (7%) Query: 13 IEEELKSSYLDYAMS---------VIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN-KA 62 I E+L S LD MS +I RALPD RDGLKPV RR+LY+M L WN K Sbjct: 12 INEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLK-LWNDKP 70 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 +KKSAR+VGDVIGKYHPHGDS++Y+ +VRMAQ + + L+ GN GSID D AAAMRY Sbjct: 71 FKKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSIDDDPAAAMRY 130 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RLA+I++ ++ +EK V F N+D +EK P V+P IPNLL+NG+ GIA G AT + Sbjct: 131 TESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFATEM 190 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL E+++ +A I + +E L+++I GPDFPT +I+G GI +A++ GRG++ + Sbjct: 191 PPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGGVIHGLSGIVQAFKEGRGRISL 250 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 + E ++ E I++ +IPY K++++ I E++ ++++GI + D+SD+DG+ Sbjct: 251 TCKYE-HINLPDKNE-ILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRDGIS 308 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 I I++++ A E ++ L+S+T+LQV + N +A+ +G P ++NL +++ ++ H + + Sbjct: 309 IAIKLEKKANHESIMKYLFSKTELQVFYNYNNIAIKNGSPTLLNLNELLDIYIEHLKTIN 368 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 + F+L KAR R ++E D II IR +N + G + Sbjct: 369 VKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIR------------ASNDGKKGVIED 416 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 ++ ++ +++QA AI +LRL +L+ + +E +EL+ Sbjct: 417 LIR---------------------IFAFSQRQATAIAELRLYRLSQTDFYLYQNEKEELI 455 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADIN--LEDLITQEDVV 540 QI + +IL S + L + L+ +++ + R+T+I N +E+L+ E Sbjct: 456 KQINDFEKILNSDNELKTYLVNILKKIKKTYPTPRKTQIIDEELKRNYDIEELVVDEKCY 515 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V+LS GY+K ++ G +KE D + L A T D +L FS G Sbjct: 516 VSLSQDGYLKRVSSKTFKTNDFASFG-----LKENDNLSFLSKATTKDKLLIFSDHGNYA 570 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + +Y++ E + G I + + E+I +L V EF + + + T G K+ L Sbjct: 571 IIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNEFSQDYYISLVTQKGLGKRVSL 630 Query: 661 TEFNRLRTAG-KVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 +F R + AI L D D L+ V ++ G+ ++LF+ VV+F E ++ + Sbjct: 631 NKFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSEDALPVISTKGQ 690 Query: 720 GVRGIRLGEGDKVVSL-IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 G + I+L EG+KV ++ I D IL +N K + + RA KG Sbjct: 691 GNKMIQLSEGEKVSAMSITKTTDNLILITNKNNLIK-VPTSHFKFTPRAAKG 741 >UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6X2_MYCCR Length = 864 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/725 (35%), Positives = 401/725 (55%), Gaps = 44/725 (6%) Query: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80 ++ YA VI RA+PDVRDGLKPV RR+LY+M +LG KAYKKSARVVGDVIGKYHPH Sbjct: 21 FIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKKSARVVGDVIGKYHPH 80 Query: 81 GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 140 GDS++YD +VRM+Q + + LVD GN GSID D AAAMRYTE+RL +I+ ++ L K Sbjct: 81 GDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAMRYTEVRLEEISALMLELLNK 140 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD 200 + + N+D +EK P V+PT +PNLLVNG+ GIA G AT IPPHNL+EVI+G +A I + Sbjct: 141 NVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPPHNLSEVIDGAIAMIKN 200 Query: 201 EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETII 260 E I+ L IPGPDFPT I+ GI +A+ G+G++ + A+ E+ K +I Sbjct: 201 EKITNSELQSIIPGPDFPTGGIVYDNGGISDAFSKGKGRISLVAKYEIV--NKNKDISIQ 258 Query: 261 VHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNL 320 + +IPY + KA LI +I ++ E++V GI + D+SD++G+ I I+++ DA ++V+N L Sbjct: 259 ISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISIDLEADANVDLVVNYL 318 Query: 321 YSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHIL 380 +T +Q+ + N VA+ + PK+++L ++I ++ H + + + ++L K++ R I+ Sbjct: 319 LQKTDMQIYYSYNSVAICNNSPKLVSLSEMIKYYLDHLKNIKLKEIDYDLFKSQKRYEII 378 Query: 381 EALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPE 440 + D +I++IR + ++G + ++ G Sbjct: 379 QGFLKVADITDEVIKVIRASDNS------------KIGVIKDLIAHFG------------ 414 Query: 441 FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLME 500 T+ QA+AI +RL +L+ ++ E L E KEL ++I L + + + Sbjct: 415 ---------FTQIQAEAIAQMRLYRLSKIDQENFLSESKELENKIELLNNLKNDSTAFKK 465 Query: 501 VIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDVVVTLSHQGYVKYQPLSEYE 558 + + L+ V+ FG R+T+I S IN EDLI E++ ++ QGY K L + Sbjct: 466 FLIKTLKQVQNNFGQPRKTQILKKDFSIKINHEDLIKDENIYFGITQQGYYKKISLKNFS 525 Query: 559 AQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP 618 IK++DF+ L N D I +++ + + +QL E + G Sbjct: 526 LSDLDKYA-----IKKDDFLILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSYKNIGND 580 Query: 619 IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI-KLV 677 + + +QDE I A + ++E + + + + +G K+ L LRT I KL Sbjct: 581 LKIEVDFQQDEYIVAQINISENKNNSNIILVSKHGLAKRVSLDSLFNLRTKKLTNIFKLK 640 Query: 678 DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV 737 + DELIG LT + + S + ++ E + G N+ GV+ L +G++ + L Sbjct: 641 EHDELIGAYLTDNLANIAIISNLNRSLKVAEIDIPIYGRNSAGVKLATLKKGEQ-IQLAY 699 Query: 738 PRGDG 742 P DG Sbjct: 700 PIADG 704 >UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7D2_9CAUL Length = 737 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/651 (39%), Positives = 377/651 (57%), Gaps = 66/651 (10%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E L YL YA+S I RALPDVRDG KPVHRR+LYAM+ + + A +K A+VVG+ Sbjct: 18 METALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKCAKVVGE 77 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 V+G YHPHGD+++Y+ +VR+AQ F+ RY LVDGQGNFG+IDGDSAAAMRYTE +L A Sbjct: 78 VMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECKLTPAAV 137 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 L+ +++++VDF YD ++ P V+P PNLL NGSSGIAVGMAT+IPPHN+ E+I+ Sbjct: 138 LLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELID 197 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEVD 251 C +D + + L++ +PGPDFPT + + G I +AY TGRG V +RAR E E D Sbjct: 198 ACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRARWETE-D 256 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 G IIV E+PYQV K+RLIE +A+L++ K+ + +RDES +D +R+++E K Sbjct: 257 LGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAED-IRLILEPKNRT 315 Query: 312 V-GEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 + E+++ +L+ + L+V F INM L G P++M LK + AF+ HRREV+ RR+ + Sbjct: 316 IEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLNRRSQWR 375 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 + + R H+LE L + NID +I ++R P K L+A Sbjct: 376 IARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQP---KAVLIAR---------------- 416 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 FG LTE QA ILD RL++L LE + E+K L +++A L Sbjct: 417 -----------FG-------LTEVQADFILDTRLRQLARLEEMTIEKEFKALSEELAHLQ 458 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEIT---ANSADINLEDLITQEDVVVTLSHQ 546 + S + + I +ELE VR+ RRT I SA + E I +E + V LS + Sbjct: 459 ALTSSEGKQWKAISKELEAVRKALISPRRTTIADAVDTSAFVAPEAFIPREAITVILSER 518 Query: 547 GYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 G++ R KGK S + KE D + L+ A T D +L +S GR++++ Sbjct: 519 GWI------------RAAKGKVEDPSELKFKEGDQLAYLVPAYTTDKLLVGASDGRIFTI 566 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 653 +L A+ G P+ ++ L++ I +L + G K+ +A+ G Sbjct: 567 GADKL--ASGRGHGEPLRLMIDLDEKAEIINVL---AHQPGGKLLIASKAG 612 >UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaproteobacteria RepID=PARC_CAUCR Length = 759 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 270/717 (37%), Positives = 401/717 (55%), Gaps = 81/717 (11%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + E L YL YA+S I RALPDVRDGLKPVHRRVLYAM+ + + + A +K A+VVG+ Sbjct: 23 LTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVGE 82 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 V+G +HPHGD+++YD +VR+AQ FS R LV+GQGNFG+IDGDSAAAMRYTE ++ + A Sbjct: 83 VMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECKMTEAAM 142 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 L+ ++++ VDF YDG ++ P V+P+ PNLL NGSSGIAVGMAT+IPPHN E+I+ Sbjct: 143 LLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNAAELID 202 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 C + + D + L+E +PGPDFPT I+ R + E Y TGRG V +RA+ E E D Sbjct: 203 ACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKWEKE-D 261 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 G I+V EIPYQV K+ L+E++A+L+ K+ + +RDES +D +R+V+E K Sbjct: 262 TGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAED-IRLVLEPKSKN 320 Query: 312 V-GEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 V EV++ +L+ + L+ F +N+ L G P +M +K + AF+ HRREV+TRR Sbjct: 321 VEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRRARHR 380 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 L K R HIL+ L +A N+D +I ++R+ P E ++E G Sbjct: 381 LAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKE----------------KLIETFG- 423 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 LT+ QA AIL+ RL++L LE ++ E+ EL+++ +L Sbjct: 424 --------------------LTDIQADAILNTRLRQLAKLEEMEIRREHAELVEERDGIL 463 Query: 490 RILGSADRLMEV-------IREELELVREQFGDKRRTEITANS---------ADINLEDL 533 +L S + ++ +R L ++ R T +T S AD +E + Sbjct: 464 AMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGRSVFGEAPQVDADAAIEAM 523 Query: 534 ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVANTHDH 589 I +E + + LS +G++ R KGK S + KE D + L+ A T D Sbjct: 524 IVREPITIILSERGWI------------RAAKGKIDDPSELKFKEGDKLGFLVPAETTDK 571 Query: 590 ILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMA 649 +L FSS GR +++ +LP A RG G P+ ++ L+ +I + P F+ G K +A Sbjct: 572 LLIFSSDGRFFTLGCDKLPSA-RG-HGEPVRMMIELDDKVKIIDVFP---FKAGRKRILA 626 Query: 650 TANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 + G E R AGK + + G+E L + D++ + GK++ F Sbjct: 627 SKGGYGFLMPEEEALANRKAGKQVLNV--GNEGAAFCLEAVGDQLAVIGDNGKILIF 681 >UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphaproteobacteria RepID=A3VFM2_9RHOB Length = 856 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 261/652 (40%), Positives = 384/652 (58%), Gaps = 59/652 (9%) Query: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80 YL YA+S I+ RALPD RDGLKPVHRR+L+AM L + ++KS+++ GDV+G YHPH Sbjct: 66 YLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLNSGGRFRKSSKISGDVMGNYHPH 125 Query: 81 GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 140 GD+A+YD + R+AQ F++RY LVDGQGNFG+IDGD+ AA RYTE R+ +A L+ L++ Sbjct: 126 GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTIVAEALLEGLDE 185 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD 200 + VDF +NYDGT + P V+P P+LL NG++GIAVGMATNIPPHN++E+++ CL I Sbjct: 186 DAVDFRENYDGTLREPVVLPATFPHLLANGAAGIAVGMATNIPPHNISELVDACLHLIKT 245 Query: 201 EDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETI 259 D + L+ +IPGPDFPT I+ R I EAYRTGRG + +R++ EVE D G+ I Sbjct: 246 PDARDDTLLNYIPGPDFPTGGVIVEPRENIAEAYRTGRGSIRLRSKWEVE-DLGRGQWQI 304 Query: 260 IVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK-RDAVGEVVLN 318 IV EIPYQV K++LIEK+AE+++ K+V ++ +RDES D +RIV+E K R+ E+++ Sbjct: 305 IVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDES-ADDVRIVLEPKTRNVEPEMLMG 363 Query: 319 NLYSQTQLQVSFGINMVALHHG-QPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRA 377 L+ + L+V F +NM L G PK+ +LK+++ AF+ RREV+ RR+ + K R Sbjct: 364 LLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVLRAFLDFRREVLIRRSQHRMEKIDHRL 423 Query: 378 HILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG------------------- 418 +LE +A N+D +I++IR+ P K AL+ W Sbjct: 424 EVLEGFIIAFLNLDRVIDIIRYDDDP---KAALMYEDWSRPHQDTIARATNEHDYVSPLA 480 Query: 419 --NVAAMLERAGDDAARPEWLEPEFGV----------RDGLYYLTEQQAQAILDLRLQKL 466 +VA++ R + A PE + G +G L++ QA AIL++RL+ L Sbjct: 481 GIDVASLELREDETATAPEIITDNTGSGATPKRFVGRSEG---LSDVQADAILNMRLRSL 537 Query: 467 TGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD-----KRRTEI 521 LE +L+ E L+++ A L +L S D I +EL+ +++FG RRT+ Sbjct: 538 RRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGDELKDAKKKFGKDYVAGARRTQF 597 Query: 522 --TANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFID 579 A D+ LE +I +E V + S G+++ +S + R K K+ D Sbjct: 598 AEAAEVPDVPLEAMIEREPVTIVCSQMGWIRA--MSGHVDLTRDFK------FKDGDGPR 649 Query: 580 RLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI 631 A T D I+ F++ GR Y++ LP RG G P+ ++ L D I Sbjct: 650 FAFHAETTDKIIVFAANGRFYTLGASNLP-GGRGM-GEPLRLMVDLPNDVEI 699 >UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae RepID=B8DTB4_BIFA0 Length = 982 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 306/886 (34%), Positives = 440/886 (49%), Gaps = 157/886 (17%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 I + EE+ S+L+YA SVI RALPD RDG+KPV RR++Y M + + Y KS Sbjct: 19 HIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYMKS 78 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVG+V+GK HPHGDSA+Y+ +VR+AQPF++R LVDG GNFGS+D D AA RYTE R Sbjct: 79 ARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEAR 137 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 LA A + AD++++TVDFV NYD K P V+P+ IPNLLVNG+SGIAVGMATN+ HN Sbjct: 138 LAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMATHN 197 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV+ + D +++ LM+++PGPD+P II GR+GI +AY TGRG V R+ Sbjct: 198 LGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTRSAT 257 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRIVI 305 VE + ++ I+V ++PY V R++E+I+E VK +++GIS D +D+ +G RIVI Sbjct: 258 HVE-NLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIVI 316 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K VL L+ T LQ +F IN VAL +G+P + L+ ++ ++ HRR V+ RR Sbjct: 317 ELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVIRRR 376 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + F +KA DR H++E L +AL +ID +I +IR + AK L++ Sbjct: 377 SEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR------------ 424 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L + QAQ ILDLRL++LT + +L E EL I Sbjct: 425 ----------------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSI 462 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRT------------EITANSADI----- 528 EL RILGSA L V+ +E++ +G RRT + A+ D+ Sbjct: 463 TELERILGSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAA 522 Query: 529 --------NLEDL------------------ITQEDVVVTLSHQGYVKYQPLSEYEAQRR 562 N+ D I E V+ LS G + + + Sbjct: 523 LDAARHAENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDALTIWAK 582 Query: 563 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP-------------- 608 +G + + +D I L+ A T +S GR+ V +LP Sbjct: 583 --RGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGI 640 Query: 609 ---------EATRGARGRPIVNLLPLE----QDERITAILPVTEFEEGVKVFMATANGTV 655 E+T G ++ L L QD+ + PV + T NG V Sbjct: 641 EATELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVG---------LGTRNGIV 691 Query: 656 KKTVLTEFNRLRTA---GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 712 K+ +NR I L DGDEL+ +D + S++ ++ ++ +VR Sbjct: 692 KR-----WNRESPTTMDSWSIIDLKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVR 746 Query: 713 AMGCNTTGVRGIRLGEGDKVVS---------------------LIVPRGDGAILT----- 746 G G+ GI L +G V+S L+ P +LT Sbjct: 747 PQGRTAAGMAGIHLADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSPASGAVVLTVAGDV 806 Query: 747 ----ATQNGYGKRTAVAEYPTKSRATKGVISIKVTE-RNGLVVGAV 787 T+NG K T + YPTK RAT GV S + + +N L+ V Sbjct: 807 DALPGTENGAAKVTPLELYPTKGRATGGVRSQRFLKGQNTLIRACV 852 >UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n=22 Tax=Ureaplasma RepID=B5ZBW2_UREU1 Length = 855 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/757 (33%), Positives = 416/757 (54%), Gaps = 51/757 (6%) Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79 SY YA +I RALPD+RDGLKPV RR+LYAM+ LG +K YKKSAR VG+VIGKYHP Sbjct: 20 SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79 Query: 80 HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 139 HGDS++Y+ +VRM+Q + L+D GN GSIDGD+AAAMRYTE RL+KIA ++ +L+ Sbjct: 80 HGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139 Query: 140 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 K+ V F N+D +EK P ++P+ PNLL+NG++GIA G AT+IPPHN EV + + ID Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRID 199 Query: 200 DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV-DAKTGRET 258 D SIE L++ P PDFPT I+ G A++TG GK IRA E + +AK + Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQ-- 257 Query: 259 IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLN 318 II++ IPY+ NKA +I++I +++ K V G+ +RDESD G+ I+I+ K+D E V N Sbjct: 258 IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKN 317 Query: 319 NLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAH 378 LY +T L++S+ +A+ H P +++L + A + H +V+ + +++L K R Sbjct: 318 YLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIE 377 Query: 379 ILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLE 438 I+E L + ID II++IR + + +AK AL+ Sbjct: 378 IVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQT------------------------- 412 Query: 439 PEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRL 498 + T QA+AI+ +RL LT + L +E++ L Q L + S Sbjct: 413 ---------FAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKILKERIKSLQVR 463 Query: 499 MEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDVVVTLSHQGYVKYQPLSE 556 +++++ +++FG +R+T++ A++N + +I ++ + + +S GY+K Sbjct: 464 KNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKIVSKKS 523 Query: 557 YEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 616 +E+ + G +K D + V N+HD IL +S+ ++ ++ +++ G Sbjct: 524 FESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVG 578 Query: 617 RPIVNLLPLEQDERITAILPVTE-FE-EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI 674 + N + +E++ A+ E F+ + ++ + + +K+ L E + + + +++I Sbjct: 579 EHLNNYAKFDANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISI 638 Query: 675 -KLVDGDELIGVDLTSGEDE--VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDK 731 KL + D LI +L + V+ S G V+ F + + G++ ++L D+ Sbjct: 639 MKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDE 698 Query: 732 VVS-LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 + S LIVP +I G K +++E RA Sbjct: 699 ISSILIVPNNGYSIQLFLDQG-NKCFSISELKLSKRA 734 >UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=A9F3U1_SORC5 Length = 800 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 273/772 (35%), Positives = 418/772 (54%), Gaps = 83/772 (10%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNV---LGNDWNKAYKKSAR 68 ++ +E + YL+YA+SVI RALPDVRDGLKPV RR+LYAM LG D Y+KSA Sbjct: 37 SLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAK--YRKSAA 94 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VVGDV+GKYHPHGD A+YD +VR+AQ F +R L+ G GNFGS+DGD+ AAMRYTE +L Sbjct: 95 VVGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLR 154 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 +A EL+++L + TVDF NYDGT P V+P++ PNLLVNGS GIAVGMAT+IPPHNL Sbjct: 155 PLALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLG 214 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIING-RRGIEEAYRTGRGKVYIRARAE 247 EVI+ C+A I++ +++ L+ ++ GPDFPT ++ ++ +E Y G+G + +R + Sbjct: 215 EVIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQ 274 Query: 248 VEV-DAKTG-RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 +E D K G I++ IPY + + ++EKIAE++ K++ + +RDES + +RIV+ Sbjct: 275 LEEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGE-VRIVM 333 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL------HHGQPKIMNLKDIIAAFVRHRR 359 E+KR A ++V+ LY QT L ++ +N+ L P+ + L +I+ F+ R Sbjct: 334 ELKRGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRY 393 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 VTRR FEL + R R ILE +D +I +IR + A+A L+ Sbjct: 394 ATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKR------ 447 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L E+Q AIL+L+L +L LE +L K Sbjct: 448 ----------------------------FTLNEEQTDAILELKLYRLARLE---ILLVQK 476 Query: 480 ELLDQIAELLRILG---SADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLI 534 +L ++ AE RI G S + ++R+EL ++ +G+KRRT++ + + + ED I Sbjct: 477 DLGEKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGSYGEKRRTKVVGSIDEPEYQAEDFI 536 Query: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594 ED V LS QG+VK + R K ++ RI+E D + + +T + FS Sbjct: 537 VAEDANVILSAQGWVK---------RVREVKDLASTRIREGDSVLAAVAGSTRSTVAFFS 587 Query: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAIL-------------PVTEFE 641 + G Y +++ +P++T G P+ L L ER+ A++ P + Sbjct: 588 NLGACYVCRIHDVPQST--GYGDPVQKLFKLADGERLIALMSFDPRALDVPAQTPDSAEP 645 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRT-AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 E T G + L T +G+ KL +GDE++ V G D V+ S++ Sbjct: 646 EPPFALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLFVHAVDGADRVLCASSD 705 Query: 701 GKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTA-TQNG 751 + + + G +R+ EG+++V + G ++T T+ G Sbjct: 706 AWALSVAVEELALLSGPGKGSVVMRVAEGERLVGAALALGPSDVITVETEKG 757 >UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphaproteobacteria RepID=C6XHT3_LIBAP Length = 753 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 Query: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 Query: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 >UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PLT5_MYCA5 Length = 949 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 262/798 (32%), Positives = 428/798 (53%), Gaps = 64/798 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +L I N+ + + + Y+ +I RA+PD RDGLKPV RR+LY+M L N Sbjct: 9 MYNLTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNN 68 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +A++KSA++VG+V+G+YHPHGDS++Y+ +VRM+Q + + L++ GN GSID D AAAM Sbjct: 69 QAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAM 128 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL KI+ ++ DL+++ V N+D TE P V+P+ IPNLL+NGS GIA G AT Sbjct: 129 RYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFAT 188 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL+EVI+ + I + IS+E L + + GPDFPT +I+G GI +A+ TG+GK+ Sbjct: 189 EIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQAFETGQGKI 248 Query: 241 YIRARAEVEVDAKTGRETII---VHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 I +R V A+ II ++E P+ V K++L+ I LV +K + G+ +RD+S+ Sbjct: 249 NISSRYRF-VYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSN 307 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 ++G+ I +E++ +A E ++N L S+T L++S+ NMVA+H PK+MNL+ ++ ++ H Sbjct: 308 REGISIYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQMLLFTYLSH 367 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 +++ T+ F+L+K R I++ D +I +I+++ +K ++ Sbjct: 368 LKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDN---SKKGVI------ 418 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 E LE FG T QA AI +LRL KL+ ++ + +E Sbjct: 419 -----------------EALEKTFG-------FTNIQATAIAELRLYKLSKMDQLEFQNE 454 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS--ADINLEDLIT 535 KEL +IA +L + + + I E+L+ +++++ R +EI+ + +IN + L Sbjct: 455 AKELAIKIARCKELLENPNEFDKFIIEQLKDIKKEYAKPRFSEISQDKIRTEINTKLLAK 514 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 ED LS +GY+K + G S ++K+ D I N+ ++ F++ Sbjct: 515 NEDFYFFLSKEGYIK-----RISKKAFSSNGFSGFKLKDNDAIFYYDKINSLSKLIFFTN 569 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 G + + + L E G I +L+ LE +ERI ++ + F + + T G Sbjct: 570 LGNYFIIDAHTLKENGWKDIGNHISSLVALENNERIIRVMEIESFNTYSRFIILTKKGMA 629 Query: 656 KKTVLTEFNRLRTAGK-VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 KK + EF+ + A K I L DEL V + + E + + G E+ V Sbjct: 630 KKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNKEKLLFILLTGGLYYLIDENVVPEY 689 Query: 715 GCNTTGVRGIRLGEGDKV--VSLIVPRGDGAILTATQNGYGKRT--------------AV 758 +G+ I+ ++ S I P+ ++ T G KRT V Sbjct: 690 SLKASGISLIKTDRDQEIEAFSPISPK--NKVIIMTDKGQFKRTKMETVKLVGRSSHGKV 747 Query: 759 AEYPTKSRATKGVISIKV 776 YP K+ ++K VIS++V Sbjct: 748 FYYPMKTVSSK-VISLEV 764 >UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaproteobacteria RepID=PARC_RHIME Length = 758 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/642 (38%), Positives = 371/642 (57%), Gaps = 66/642 (10%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I PV+++ L+ YL YA+S I+ RALPDVRDGLKPVHRR+++AM+ +G N ++KK A Sbjct: 15 IQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFKKCA 74 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDVIGK+HPHGD +VYD +VR+AQ FS RY +VDGQGNFG+IDGD+AAA RYTE ++ Sbjct: 75 RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTEAKM 134 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++A L+ ++++ VDF Y+ ++ P V+P PNLL NG+SGIAVGMAT+IPPHN Sbjct: 135 TEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPPHNA 194 Query: 188 TEVINGCLAYIDDEDISIEGLM--------EHIPGPDFPTAA-IINGRRGIEEAYRTGRG 238 E+ + L I D ++E L+ I GPDFPT I+ R + E+YRTGRG Sbjct: 195 HELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRTGRG 254 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 +RAR VE D G I+V EIPYQV K+RLIEKIAEL+ +++ + +RDES + Sbjct: 255 GFRVRARWAVE-DLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDESAE 313 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRH 357 D +++ R +++ +L+ T+L+ +NM L G+ P++M L ++++ ++ H Sbjct: 314 DVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWLAH 373 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 RREV+ RR+ L R IL +A NID +I +IR P Sbjct: 374 RREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPK------------- 420 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 A M+ER G LT+ QA+AIL++RL+ L LE ++ E Sbjct: 421 ---AVMIERFG---------------------LTDVQAEAILNMRLRSLRKLEEFEIRTE 456 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL- 530 + L + AE+ +L S D+ + + E+ V+++F G +R T A AD+ Sbjct: 457 FDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPDADVEAI 516 Query: 531 -EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDH 589 + +I +E + V +S +G+++ A + S+ + K+ D + A T D Sbjct: 517 QQAMIEKEPITVVISEKGWIR--------ALKGHIADTSSLQFKDGDGLKVSFPAQTTDK 568 Query: 590 ILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI 631 IL F++ G+ Y++ +LP RG G P+ ++ +E D+ + Sbjct: 569 ILIFTTGGKAYTLGGDKLP-GGRG-HGEPLRIMVDMENDQDV 608 >UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mobile RepID=Q6KHI4_MYCMO Length = 858 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 275/812 (33%), Positives = 441/812 (54%), Gaps = 62/812 (7%) Query: 24 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 83 YA +I RALPDVRDGLKPV RR+LY+M+ LG K +KKSARVVGDVIGKYHPHGDS Sbjct: 26 YAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEKPFKKSARVVGDVIGKYHPHGDS 85 Query: 84 AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 143 ++Y+ +VRM+Q + + L+ GN GSID D AAAMRYTE RL+KI+ L++D++ +TV Sbjct: 86 SIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPAAAMRYTEARLSKISSLLLSDIKSDTV 145 Query: 144 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 203 F N+D +EK P V+P PNLLVNG+ GIA G AT IPPHNL EVI+G +A I + +I Sbjct: 146 SFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATEIPPHNLGEVIDGIIAKIKNPNI 205 Query: 204 SIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHE 263 IE L I GPDFPT II G GI+EA +GRG++ I ++ EV + I++ E Sbjct: 206 KIETLNTIIKGPDFPTGGIIYGIDGIKEAAFSGRGRITITSKYEVH------KNQIVITE 259 Query: 264 IPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQ 323 IPY V K++L+ +I E+ +K + G++ +RDE+++DG++IVI+++ A ++ L + Sbjct: 260 IPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGIKIVIDLEAGADASKIMKFLMQK 319 Query: 324 TQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEAL 383 T+LQ+ + N +A+H+ P +MNL D+I AF+ H + + T + FEL K R I+E Sbjct: 320 TELQLYYSYNNIAIHNNAPVLMNLHDLIQAFLDHVKVIQTNKINFELEKLSKRLEIIEGF 379 Query: 384 AVALANI-DPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFG 442 + L I D +IE+IR + +K +V N ++ N Sbjct: 380 -IKLTEISDQVIEMIRKSEG---SKVGVVENLIKIFN----------------------- 412 Query: 443 VRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 502 +E QA++I +LRL +L+ + E+ + E +EL +I L +L S + Sbjct: 413 -------FSEIQAESIANLRLYRLSKTDVEEFIKEKQELETRINFLKTLLSSESEFNAEL 465 Query: 503 REELELVREQFGDKRRTEIT--ANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQ 560 + + +++ + R+TEI A D++L DLI E+ V +S GY+K + + Sbjct: 466 IKIFKDIKKTYATPRKTEIKDQALKLDVSLSDLIQAEETFVGISRDGYIK-----RFNQK 520 Query: 561 RRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIV 620 +KE+D + L T +L F+++G S+ ++++ E G + Sbjct: 521 IHDSNEMQTYLLKEDDALIFLSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGIHLN 580 Query: 621 NLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR-TAGKVAIKL-VD 678 + L +E + +L V +F + + + T G KK L EF R AIK D Sbjct: 581 DFATLLPNEFLIKVLYVDDFSKDFSITLITKKGFGKKVQLPEFEVSRENKSYPAIKFKKD 640 Query: 679 GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP 738 GDEL+ +T+ +++L + + +V +F E+ + G GV+ ++ + I Sbjct: 641 GDELLNAFITNDRLDILLVNTKLEVYKFSENDFKTYGIKAAGVKISDNATKFEISAAIAY 700 Query: 739 RGDGAILTATQNGYGKRTAVAEYPTK-----SRATKGVISIKVTERNGLVVGAVQV-DDC 792 + ++ T++G+ ++ P K ++ K +S ++ + D+ Sbjct: 701 SQNDTLVFLTESGHARKIN----PKKVDILNQKSIKTFLSTSAKPSGKIIKYIFNLNDNV 756 Query: 793 DQIMMITDAGTLVRTR-VSEI-SIVGRNTQGV 822 D + TD+ + T+ +SE S +T+G+ Sbjct: 757 DLAIRTTDSIVTINTKEISETESFTNLHTKGI 788 >UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteobacteria RepID=PARC_PSEAE Length = 754 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 274/767 (35%), Positives = 426/767 (55%), Gaps = 90/767 (11%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ E + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG D + +KKSAR VG Sbjct: 16 SLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKSARTVG 75 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRLAKI 130 DV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D S AAMRYTE RL++ Sbjct: 76 DVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 + L+++L + TVD+V N+DGT P V+P ++PNLL+NG++GIAVGMAT++PPHNL EV Sbjct: 136 SEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPPHNLREV 195 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPT-AAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 + C+ +D ++ L EH+PGPDFPT A II R +++ Y TGRG V +RA VE Sbjct: 196 ASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRMRAVYRVE 255 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG-MRIVIEVK 308 I++H +P+QV+ ++++E+IA ++ K++ ++ LRDESD + RIVI + Sbjct: 256 ------DGDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTRIVIIPR 309 Query: 309 RDAVG-EVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVTRRT 366 + V E ++ +L++ T L+ S+ +N+ + G+P++ +L+ +++ +++ R V RR Sbjct: 310 SNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLSEWLQFRIGTVRRRL 369 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F L K R H+L+ L +A N+D +I +IR P A ++ER Sbjct: 370 QFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPK----------------AVLMER 413 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + L+E QA ILD RL++L LE K+ E +ELL + Sbjct: 414 ---------------------FELSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQK 452 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DLITQEDVVVTLS 544 L +LGS +L +++REEL E +GD RR+ I A + L +L+ E V V LS Sbjct: 453 RLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELMPTEPVTVVLS 512 Query: 545 HQGYVKYQPLSEYEA---QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 +G+V+ + +A + G G AA ++ + + S GR YS Sbjct: 513 EKGWVRCAKGHDIDAAGLSYKAGDGFKAA-----------APGRSNQYAVFIDSTGRSYS 561 Query: 602 MKVYQLPEATRGARGRPIVN-LLPLEQDERITAILPVTEFEEGVKVFMATANG---TVKK 657 + + LP A RG +G P+ L P +LP ++ +A+ G VK Sbjct: 562 LPAHSLPSA-RG-QGEPLSGRLTPPPGASFECVLLP----DDDALFVIASDAGYGFVVKG 615 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG--EDEVMLFSAEGKVVRFKESSV---- 711 L N+ AGK + L +G ++ +D + + EG+++ FK S + Sbjct: 616 EDLQAKNK---AGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLG 672 Query: 712 RAMGCNTTGVRGIRLGEGDKVVS--LIVPRGDGAILTATQNGYGKRT 756 + G G+ G R+ ++ ++ ++P G +L A GKRT Sbjct: 673 KGKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQA-----GKRT 714 >UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNU6_9RICK Length = 746 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/707 (35%), Positives = 391/707 (55%), Gaps = 69/707 (9%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +++ I ++ + YL YA+S I RALPDVRDGLKPVHRR++YAM +L + Sbjct: 1 MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSARVVGDVIGK+HPHGD +VYD +VR+AQ FS Y LV+GQGNFG++DGD+AAAMRYT Sbjct: 61 KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E +L K + L+AD+E+ETV+F YDG P+++P++ PN+L NGSSGIAVGMAT+IP Sbjct: 121 ETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGKVYI 242 PHN+ E+ + D+ + SI+ L++ I GPDFPT I+N ++ I +AY+TGRG I Sbjct: 181 PHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEI 240 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 +++ +VE D G I V EIPY VNK++LIEK+A ++ K+ + + + DESD + +R Sbjct: 241 KSKYKVE-DLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESD-EKIR 298 Query: 303 IVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLKDIIAAFVRHRRE 360 IV+ K R+ E ++N+L+ Q++L+ +NM L+ +PK+MNLK+I+ + ++HR Sbjct: 299 IVLRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYI 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ + F+L+K + R IL+ + N++ II++IR++ P K L+ Sbjct: 359 ILNNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDP---KKELIKK------- 408 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y T Q +IL++RL+ L +E + E+K Sbjct: 409 ---------------------------YKFTLIQVDSILEMRLRNLKKIEELDIKKEFKN 441 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDK-----RRT--EITANSADINLED- 532 L + L +IL S + I E V +FGD RR+ E D LE Sbjct: 442 LELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDNSTYGPRRSILEKFVKFTDDELESK 501 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 L E++ V+L ++ ++K KG K D + ++ T D I Sbjct: 502 LEVIENINVSLINEKFLK------------SKKGTYKRSEKNSDDVSLIINCKTSDQICL 549 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 S+ G+ Y + L + +G I + L L+ +E+I + E +E + +++ N Sbjct: 550 LSNIGKSYILNCSNLKFGS--TKGFLISSYLKLKDEEKIVDLFVYKEKQE---IILSSQN 604 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE--VMLF 697 G + + +GK + D+ G L + E + ++LF Sbjct: 605 GYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLF 651 >UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G39_TROWT Length = 824 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 271/778 (34%), Positives = 416/778 (53%), Gaps = 66/778 (8%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +IT V++ +++ S+L+YA SVI RALPD RDGLKPV RR+LY M+ +G +KA+ K Sbjct: 20 KITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHVKC 79 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARV G+V+GK HPHGD+A+YDT+VRM+Q F++R L+DG GNFGS++ D AA RYTE R Sbjct: 80 ARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSLN-DGPAASRYTEAR 138 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L++ A ++ DLE VDFV NYD P+V+P +PNL+VNGSSGIAVGMAT+IPPHN Sbjct: 139 LSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPPHN 198 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L E + + + + S+E +M+ +PGPDFPT +II G+ +E Y TG+G IRA+ Sbjct: 199 LQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKGSFKIRAKI 258 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVI 305 ++ A G +++ E+PY V R+IEKI + V R++GI + D SD K+G+++VI Sbjct: 259 SIDY-AGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKLVI 317 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 +K + V++NLY T L+ SF +N VAL G+PK + + D++ F+ HR V+TRR Sbjct: 318 GIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDMLKVFIDHRVCVITRR 377 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + F L + R H+++ L +AL +ID I +IR++ EA+ L+ Sbjct: 378 SKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMK------------- 424 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 +T QA+ ILD+RL LT L KL E +EL Sbjct: 425 ---------------------CLNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRKTT 463 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN------SADINLEDLITQEDV 539 +L IL +++ ++ +EL+ V ++ RRT + ++ D + ++T Sbjct: 464 QDLEEILSDPNKIDAILIDELKKVAQRLPSPRRTILESSVKSKKQKTDYPRQVVLTTNGF 523 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 + T+ + + LS+ E S + + +V I +S G+V Sbjct: 524 IFTIEVNNDLISE-LSQPETFDMAFNTHS----EPLRVVKSSIVCGVRSRIGALTSAGKV 578 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 LP G + L LE DE + E + + +AT++G VK+ V Sbjct: 579 IPFTPIGLPVLDSGFVTAK--SFLGLENDEEAVLLF---ELHQKESLAIATSSGIVKR-V 632 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDL-TSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 RT + I L GD ++G S + +A+G ++ + V Sbjct: 633 TPAIWPDRT--ERVITLSAGDRVVGAARGVSSCGYFVFITAKGNLLHYSAGLVNPQNRPA 690 Query: 719 TGVRGIRLG-EGDKVVSL----IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 GV G+ L + D+V+S V R + +LT ++ R ++ Y T+ RAT+GV Sbjct: 691 RGVAGVTLKDDDDRVISFGYTEDVDRAN--VLTVSKRMTTSR--LSSYQTRGRATRGV 744 >UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Planctomycetaceae RepID=A6CC19_9PLAN Length = 802 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 267/813 (32%), Positives = 431/813 (53%), Gaps = 70/813 (8%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM-NVLGNDWNKAYKKSARV 69 V I + + YL+YAMSVI RALPDVRDGLKPV RR+LY M + L N +K A++ Sbjct: 27 VPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAKPRKCAKI 86 Query: 70 VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 129 GD G YHPHGD++VYD +VR+AQ F+LR L++GQGNFGSI G AAA RYTE RL Sbjct: 87 CGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAAAARYTEARLTG 146 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 IA LM +L +TV+ NYDGT P V+P + PNLLVNG GIAVGMATNIPPHNL E Sbjct: 147 IAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNIPPHNLGE 206 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEV 248 VI C+ I +D ++ LM+HI GPDFP I+ +R + Y+ GRG V +R + Sbjct: 207 VIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVKVRGEWKP 266 Query: 249 EVDAKT-GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-DKDGMRIVIE 306 E +T G + ++V+ +PY V L+ +I +V+ +++ + + DE+ DK+G++IV+E Sbjct: 267 EPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKNGLKIVLE 326 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-----PKIMNLKDIIAAFVRHRREV 361 +K DA E V+ LY T L+ +F +NM L + P+ +LK+++ F+ R Sbjct: 327 IKPDADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQYFLDFRFIS 386 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 V +R ++L+ R HIL+ A+ ++D ++LIR + +A L+AN Sbjct: 387 VRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN-------- 438 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + L E Q AIL+L+L +++ LE + +E E Sbjct: 439 --------------------------FPLDEIQTMAILELQLYRISKLEINTIREELAEK 472 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS--ADINLEDLITQEDV 539 + ++ +IL S RL +V+ EL+ + ++F +KR+T++ ++ + + + I +E+ Sbjct: 473 EAEAEKIRKILASDKRLWKVVENELKELADEFPEKRQTKLGSSEEITEFDPQAYIVRENT 532 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V +S +G++K + + G + + R +E D + + +T DH++ FSS G Sbjct: 533 NVVVSREGWIKRVGRLK---TKEGTQELAKTRTREGDSVLAVAPGSTLDHVVFFSSDGVA 589 Query: 600 YSMKVYQLPEATRGARGRPI----------VNLLPLEQDERITAILPVTEFE--EGVKVF 647 Y++ + Q+P ++ G P+ V + + D R T T+ + V Sbjct: 590 YTLPIEQVPVSS--GYGEPLSKHARMSDGAVLVAAVTTDSRFTPEDKATKKQPLPTPHVL 647 Query: 648 MATANGTVKKTVLTEFNRLRT-AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 + T G + + F T AG+ +L D ++ L + + + + + +V+ Sbjct: 648 IVTEKGQFMRISFSLFRTASTKAGRKYCRLGKDDRVVYAGLVEEAETMFIATQDARVLHC 707 Query: 707 KESSVRAMGCNTTGVRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAEYPTKS 765 + + GV+GIRL +GD+V+ ++ + R + G +Y S Sbjct: 708 EIEEAALLSNAGKGVKGIRLEKGDQVIGVLQLTRPSDCLRVINTAGKKMTFGQMKYGVTS 767 Query: 766 RATKGVISIKVTERNG---LVVGAVQVDDCDQI 795 R KGV K ++R+G ++ ++V D D++ Sbjct: 768 RGGKGV---KTSQRSGFAEILYPPIEVVDWDEL 797 >UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobiales RepID=D0B2I0_BRUME Length = 770 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 253/660 (38%), Positives = 378/660 (57%), Gaps = 88/660 (13%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I V+++ L+ YL YA+S I+ RALPDVRDGLKPVHRR+++AM +L + ++AY K A Sbjct: 15 IERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYAKCA 74 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+GK+HPHGD+++YD +VR+AQ F++RY LVDGQGNFG+IDGD+AAAMRYTE R+ Sbjct: 75 RIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTEARM 134 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++A L+ + + +DF Y+ ++ P V+P PNLL NGS+GIAVGMATNIPPHN+ Sbjct: 135 TEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPPHNV 194 Query: 188 TEVINGCLAYIDDEDISIEGLME----------------------HIPGPDFPTAAIING 225 E+ + L I+ D +E L+ + GPDFPT I+ Sbjct: 195 AELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGILVE 254 Query: 226 RRG-IEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEK 284 G I EAYRTGRG +RAR E + G I+V EIPYQV K+RLIEKIAEL+ K Sbjct: 255 EHGNILEAYRTGRGAFRVRARWHKE-EGNRGTWVIVVTEIPYQVQKSRLIEKIAELLLAK 313 Query: 285 RVEGISALRDESDKDGMRIVIEVKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-P 342 ++ + +RDES +D +RIV+E K V E+++ +L+ T+L+ +NM L HG+ P Sbjct: 314 KLPLLDDIRDESAED-IRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKVP 372 Query: 343 KIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPT 402 +++L ++ ++ HR+EV+ RR+ F L + R IL +A N+D +I +IR Sbjct: 373 NVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREEDE 432 Query: 403 PAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLR 462 P + L RA + LT+ QA++IL++R Sbjct: 433 PKQE-----------------LMRA--------------------FELTDVQAESILNMR 455 Query: 463 LQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD-----KR 517 L+ L LE ++ E+ +L + +L +L S R + I E++ VRE+FG KR Sbjct: 456 LRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKR 515 Query: 518 RTEITANSADINLED----LITQEDVVVTLSHQGYVKYQP--LSEYEAQRRGGKGKSAAR 571 RT A++ +LED +I +E V + +S +G+++ L+++ S Sbjct: 516 RTTF-AHAPTHDLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLADF----------STLS 564 Query: 572 IKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI 631 KE D + A T D +L F++ G+ +++ LP RG G PI L+ +E D+ I Sbjct: 565 FKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLP-GGRG-HGEPIRILVDMENDQDI 622 >UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Variovorax paradoxus S110 RepID=C5CST5_VARPS Length = 798 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 275/768 (35%), Positives = 409/768 (53%), Gaps = 104/768 (13%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK---- 64 T + + + +++YL+YA+SV+ GRALPDV DG KPV RR+LY+M+ +G + A Sbjct: 18 TTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANGTVGA 77 Query: 65 ---KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 KSARVVGDV+G++HPH D A YD +VRMAQ FS RY L DGQGNFGS DGD AAAMR Sbjct: 78 KPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDGDGAAAMR 137 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RLA+I L+ ++++ TVDF+ NYDG+ + P ++P ++P L+NG+SGIAVG+AT Sbjct: 138 YTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATE 197 Query: 182 IPPHNLTEVINGCLAYI-DDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGK 239 IP HNL E+ + C+A I + +S E L++ +PGPD+P A II+G I +AYRTGRG Sbjct: 198 IPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYRTGRGS 257 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISAL------- 292 + +RAR ++E D G+ ++V+E+P V+ +++E+I E+ K G AL Sbjct: 258 LKVRARWKIE-DLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQTQL 316 Query: 293 -----------RDESDKD-GMRIVIEVKRDAVGE-VVLNNLYSQTQLQVSFGINMVALH- 338 RDES KD +R+V E K + + + L +QT L+ S IN+ + Sbjct: 317 KAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTMVGI 376 Query: 339 HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIR 398 G+P +L+ ++ ++ R V +R+ F L K DR HILE + L NID +I +IR Sbjct: 377 DGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVIAIIR 436 Query: 399 HAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI 458 A P K AL+A + L+E QA+ I Sbjct: 437 AAEDP---KAALIAR----------------------------------FNLSEVQAEDI 459 Query: 459 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 518 L++RL++L LE K+ + EL + +L ILGS L ++ +E+E + F D RR Sbjct: 460 LEIRLRQLARLEGIKIQQQLDELRTEQKKLEDILGSPAALRRLLVKEIEADAKTFEDPRR 519 Query: 519 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR--IKEED 576 T I A + E + E V V +S +G+V+ Q + +++ G G +A K D Sbjct: 520 TLIQAEKRAVA-EVKVVDEPVTVIVSQKGWVRAQ--KGWASEKAAGNGGTAPEYSFKSGD 576 Query: 577 FIDRLLVANTHDHILCFSSRG----RVYSMKVYQLPEATRGAR--GRPIVNLLPLEQDER 630 + + D +L F S RVY++ V LP GAR G+P+ L+ L+ Sbjct: 577 TLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLP----GARGDGQPVTTLIELDAGTH 632 Query: 631 ITAIL--PVTEFEEGVKVFMATANG-TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL 687 +T PV G V +A G TV +R R GK I + +G++L L Sbjct: 633 VTHFFAGPV-----GASVLLANTGGYGFIATVENMMSRQR-GGKAFIDVGEGEQLCRPSL 686 Query: 688 TSGED---------EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 G V S G+++ F + ++++ G RG+ L Sbjct: 687 VGGASGAEPMPAATHVACASTGGRILTFDIAELKSL---PKGGRGLTL 731 >UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB60_MYCGA Length = 797 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 245/771 (31%), Positives = 426/771 (55%), Gaps = 53/771 (6%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +++ ++++ + S+ YA +I RALPD+RDGLKPV RRVLY M LG +NK+Y+K Sbjct: 5 KKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRK 64 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SA VG+VIGK+HPHGDS++Y+ +VRM Q + L+D QGN GSIDGD+AAAMRYTE Sbjct: 65 SAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEA 124 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL+ + ++ ++ KETV+FV+N+D +E P ++P+ +PNLLVNGS+GIA G ATNIPP Sbjct: 125 RLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIPPF 184 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+I+ + ID + +E +++ +PGPDFPT II GI+ AY TG+GK+ IRA+ Sbjct: 185 NLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIRAK 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E D ++V +IP++ NKA +I I E+++ ++ + +RDESD+ G+R+V+ Sbjct: 245 IVNENDQ------LVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVVL 298 Query: 306 E--VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 + K + V + N LY TQLQ+++ N V + +P M++ + + +++ H ++ Sbjct: 299 QTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTILR 358 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 F+L+K + R ++ L A + ID II +I+ + +A L+ N +Q + Sbjct: 359 NAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLI-NKYQFSAI--- 414 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 QA+AI+ LRL +LT + L +E K L Sbjct: 415 ------------------------------QAEAIVSLRLYRLTNTDILALKEEKKSLDT 444 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 I + +L + L + ++E L ++ F KRR+ I N IN +I ++++ + Sbjct: 445 NIKQYQLLLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLVINEASIIEKKELYL 504 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 S G +K Y+ ++ ++ +IK++D++ L+ ++ + + ++ G V Sbjct: 505 VSSVDGLIK---TIAYDQNKQ--LNPTSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVV 559 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + +++ +A G I L ++ +E+I ++ ++ ++ ++ + + G +K+ + Sbjct: 560 INAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELS--DQNDRIVLVSKYGMIKQISVN 617 Query: 662 EFNRLR-TAGKVAIKLVDGDELIGVDLTSGED-EVMLFSAEGKVVRFKESSVRAMGCNTT 719 + ++ T + L D DEL+ +L S + E+++ + +RF + V G + Sbjct: 618 DLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNLTGLKSM 677 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 GVR I+L D+V+ + L +N K+ V+ +SRA +G Sbjct: 678 GVRAIKLKTNDQVIGFDQIKNSIDQLVLVKNKQIKKLKVSLIENQSRANQG 728 Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust. Identities = 37/205 (18%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVV-- 704 +++ +G +K +++ + ++K+ D L + S ++V + G VV Sbjct: 504 LVSSVDGLIKTIA---YDQNKQLNPTSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVI 560 Query: 705 ---RFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAE 760 + K++ R +G + + I+ + +K+V L+ + + I+ ++ G K+ +V + Sbjct: 561 NAHKIKQAKPREIGMDINELTTIK--DNEKIVKLVELSDQNDRIVLVSKYGMIKQISVND 618 Query: 761 YPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQ 820 ++TK + + + + LV + D ++++IT +R ++E+++ G + Sbjct: 619 L-VNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNLTGLKSM 677 Query: 821 GVILIRTAEDENVVGLQRVAEPVDE 845 GV I+ ++ V+G ++ +D+ Sbjct: 678 GVRAIKLKTNDQVIGFDQIKNSIDQ 702 >UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria RepID=Q21V46_RHOFD Length = 796 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 280/759 (36%), Positives = 404/759 (53%), Gaps = 96/759 (12%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG-----NDWNKAYK- 64 +N+ + +YL+YA+SV+ GRALPDV DG KPV RR+LY+M+ +G + N K Sbjct: 24 LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83 Query: 65 -KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSAR+VGDV+G++HPHGDS+VYD VRMAQ FS RY L+DG GNFGS DGD AAAMRYT Sbjct: 84 VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYT 143 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RLAKI L+ ++++ TVDF+ NYDG+ + P +P ++P L+NG+SGIAVG+AT IP Sbjct: 144 EARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIP 203 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYI 242 HNL EV + C+A I +S L IPGPD+P II+ I EAYR+GRG + Sbjct: 204 SHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKC 263 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISAL---------- 292 RAR ++E D G+ +++ E+P V+ R++E+I EL K G AL Sbjct: 264 RARWKIE-DLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKAT 322 Query: 293 --------RDESDKD-GMRIVIEVKRDAVGEV-VLNNLYSQTQLQVSFGINMVALH-HGQ 341 RDES KD +R+V E K + + ++ L + T L+ S IN+ + G+ Sbjct: 323 LLSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGR 382 Query: 342 PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAP 401 P +L+ ++ ++ R++ + RR+ L K DR HILE A+ L NID +I +IR A Sbjct: 383 PTQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQAD 442 Query: 402 TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDL 461 P K AL+A ++L+++QA+ IL++ Sbjct: 443 EP---KAALIAR----------------------------------FHLSDRQAEDILEI 465 Query: 462 RLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI 521 RL++L LE K+ E L + +L ILGS L ++ +E+E + F D RRT I Sbjct: 466 RLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPSALRRLMIKEIEADAKTFADPRRTLI 525 Query: 522 TANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAA--RIKEEDFID 579 A + LE + E V V +S +G+V+ Q + A R G A K D + Sbjct: 526 QAEKKAV-LEVKVVDEPVTVVVSQKGWVRAQ---KGWASERAANGVLPAEYSFKAGDALY 581 Query: 580 RLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR--GRPIVNLLPLEQDERITAILPV 637 T D +L F S GRVYS+ V LP GAR G+P+ +LL LE T +L Sbjct: 582 DTFECRTVDTLLAFGSNGRVYSVAVALLP----GARGDGQPMTSLLELEAG---TQLLYY 634 Query: 638 TEFEEGVKVFMATANG-TVKKTVLTEFNRLRTAGKVAIKLVDGDELI---------GVDL 687 + ++++ G +V +RL+ AGK + G+ L G Sbjct: 635 FAGPAPATLLLSSSGGYGFLASVENMTSRLK-AGKAFVTCNAGEILCRPSPVAGGSGATP 693 Query: 688 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 V SA G+++ F+ S ++ M TG RG+ L Sbjct: 694 WPAATHVACASAGGRILTFEISQLKTM---ATGGRGLML 729 >UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaproteobacteria RepID=A1TLU5_ACIAC Length = 785 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 275/754 (36%), Positives = 401/754 (53%), Gaps = 107/754 (14%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK-------KSARVV 70 + +YL+YA+SV+ GRALPDV DG+KPV RR+L+AM +G + + KSARVV Sbjct: 27 QRAYLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKPVKSARVV 86 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 GDV+G++HPHGD + YD +VR+AQ FS RY L+DGQGNFGS DGD AAAMRYTE RL +I Sbjct: 87 GDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRI 146 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A L+ ++++ TVDFV NYDG+ + P +P ++P L+NG+SGIAVG+AT IP HNL E+ Sbjct: 147 ASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREI 206 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVE 249 + C+A + + ++ E L +PGPD+P II+ I++AYRTGRG + +RAR ++E Sbjct: 207 ADACVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKVRARWKIE 266 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISAL----------------- 292 D G+ ++V E+P V+ +++E+I EL K G AL Sbjct: 267 -DLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKATVLGVLDV 325 Query: 293 -RDESDKDG-MRIVIEVKRDAVGEV-VLNNLYSQTQLQVSFGIN--MVALHHGQPKIMNL 347 RDES KD +RIV E K V + ++ L + T L+ S IN MV L G+P +L Sbjct: 326 VRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMVGLD-GKPVQKSL 384 Query: 348 KDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAK 407 + ++ ++ R++ +TRR+ L K DR HILE L NID +I +IR + P Sbjct: 385 RRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRASDEPK--- 441 Query: 408 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT 467 AA++ER + L+++QA+ IL++RL++L Sbjct: 442 -------------AALIER---------------------FRLSDRQAEDILEIRLRQLA 467 Query: 468 GLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD 527 LE K+ E KEL ++ +L IL + L ++ +E+E +QF D RRT I A+ Sbjct: 468 RLEAIKIEQELKELREEQGKLEDILANPASLRRLMVKEIEADAKQFADARRTLIQADK-R 526 Query: 528 INLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR--IKEEDFIDRLLVAN 585 E + E V V +S +G+V+ R G G A K D + Sbjct: 527 ATAEVKVVDEPVTVVVSQKGWVRA----------RQGHGHDAGTFAFKSGDALYGTFECR 576 Query: 586 THDHILCFSSRGRVYSMKVYQLPEATRGAR--GRPIVNLLPLEQDERITAILPVTEF--E 641 T D ++ F S GRVYS+ V QLP GAR G+PI L+ LE PV F Sbjct: 577 TVDTLIAFGSNGRVYSVAVSQLP----GARGDGQPITTLIDLE-----AGTQPVHYFAGP 627 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELI---GVDLTSGED------ 692 + +A + G + GK + L +G++L TSG Sbjct: 628 ANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGSQPLAPAT 687 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 V SA G+++ F+ + ++ M G RG+ L Sbjct: 688 HVCCASAGGRILTFEITELKQM---ANGGRGLML 718 >UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBL7_9GAMM Length = 749 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 274/778 (35%), Positives = 404/778 (51%), Gaps = 90/778 (11%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 ++ +YLDY+M VI+ RALP + DGLKPV RR++YAM+ LG +KKSAR VGDVIGK Sbjct: 15 VEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSARTVGDVIGK 74 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRLAKIAHELM 135 YHPHGDSA Y+ +V MAQ F+ RY LVDGQGN+GS D S AAMRYTE RL A L+ Sbjct: 75 YHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESRLTGYAKTLL 134 Query: 136 ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCL 195 A+LE+ TV++V N+DGT + P +P ++PN+L+NG SGIAVGMATN+ PHNL EV+ C Sbjct: 135 AELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHNLGEVVAACR 194 Query: 196 AYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKT 254 A I D ++ + LM++IP PDFPT +++ R I YRTGRG V +RA +E Sbjct: 195 ALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRATWHLEDG--- 251 Query: 255 GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG-MRIVIEVKRDAV- 312 II+ ++PYQV+ +++ E+IA+ ++ K++ + LRDESD + +R+V+ + + V Sbjct: 252 ---NIIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVLVPRSNRVD 308 Query: 313 GEVVLNNLYSQTQLQVSFG--INMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 E ++ +L++ T L+ + +NM+ L G+P++ NL I+ ++ +R E V RR L Sbjct: 309 HERLMQHLFATTDLEKRYSAQMNMIGL-DGRPQVKNLGQILREWLVYREETVRRRLNHRL 367 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 +R HIL+ L +A N+D II +IR T E + L+A Sbjct: 368 HAVNERLHILQGLLIAYLNLDEIIRIIR---TEDEPRPVLMAT----------------- 407 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 + L+E QA+AIL+ RL+ L LE ++ E + L + L Sbjct: 408 -----------------FALSEAQAEAILNTRLRHLARLEEIQIRAEQEALAAEQQHLHE 450 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DLITQEDVVVTLSHQGY 548 +L S +RL+ +I +EL +GD RRT I A + L+ +L E V + LS G+ Sbjct: 451 LLQSRERLLTLIADELAADAATYGDARRTVIIEREAAVALDETELTPSEAVTLILSKMGW 510 Query: 549 VKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 + RGGKG +A K D + ++ + GR Y++ + Sbjct: 511 I------------RGGKGHAIDGAALTYKNGDAYLTQISGRSNQQACLLADNGRSYTLAL 558 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 + LP A + G P+ + + ++ I A E + +A NG E Sbjct: 559 HGLPSAR--SYGEPLSSSMSIDASAHIIA---AAIIEPERRYLIAADNGYGFLIPGAELT 613 Query: 665 RLRTAGKVAIKLVDGDELIGVD-LTSGEDEVMLFSAEGKV-----------VRFKESSVR 712 +GK I I + L GE +++ S EG+V + K S Sbjct: 614 SKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPAEEIPELAKGKGSQTL 673 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 A+ T GIRL L VPRG L + + R E+ R KG Sbjct: 674 AIAKKTYDADGIRLAH-----ILAVPRGRDITLHSGKQKLTIRANEREHYLTPRGHKG 726 >UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma hominis RepID=O52166_MYCHO Length = 933 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 254/791 (32%), Positives = 418/791 (52%), Gaps = 57/791 (7%) Query: 24 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 83 Y+ +I RA+PD RDGLKPV RR+LY+M L ++ +KKSAR+VGDVIG+YHPHGDS Sbjct: 32 YSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDS 91 Query: 84 AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 143 ++Y+ +VRMAQ + + L++ GN GSID D AAAMRYTE RL KI+ ++ DL+++ V Sbjct: 92 SIYEALVRMAQDWKSNFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLKDLDRKVV 151 Query: 144 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 203 N+D +E P V+P PNLLVNG+ GIA G AT IPPHNL EVI+ +A I + I Sbjct: 152 KMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFATEIPPHNLGEVIDATIALIKNPTI 211 Query: 204 SIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAK--TGRETIIV 261 SIE L E + GPDFPT AIING I++A +G+G++ I ++ D K + I + Sbjct: 212 SIEELSEIVKGPDFPTGAIINGINEIKKALSSGQGRITISSKYHYVYDKKDESKIIGIEI 271 Query: 262 HEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLY 321 EIP+ V K++L+ I + +K++ GI + D++D++G+ I I+++ A + ++ L Sbjct: 272 IEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQTDRNGISIFIQLEDGANADAIIAYLM 331 Query: 322 SQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILE 381 ++T+L +S+ NMVA+ + +P I+NL + A++ H +EV ++L+K + R I+E Sbjct: 332 NKTELSISYSYNMVAIDNNRPVILNLYSALIAYLSHLKEVNINGINYDLKKFKLRLEIVE 391 Query: 382 ALAVALANI-DPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPE 440 + +A I D +I LI+ + + G + A++ + Sbjct: 392 GF-IKVAEISDEVIHLIKESDNSKK------------GVILALMNK-------------- 424 Query: 441 FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLME 500 + +E QA AI +LRL KL+ ++ + +E K L QI ++L + Sbjct: 425 -------FKFSELQATAIAELRLYKLSRMDQIEFQEEKKNLEIQIENCNKLLNDKWEFNQ 477 Query: 501 VIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVVTLSHQGYVKYQPLSEYE 558 + ++L ++ Q+ R TEI+ D I+ + L ED + ++ GY K L Y Sbjct: 478 YLIKQLLEIKNQYSKPRLTEISDQKIDKEIDHKLLTKNEDFYLYITKDGYYKKISLKVYT 537 Query: 559 AQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP 618 + S ++KEED + N+ IL F++ G + + + + G+ Sbjct: 538 SNEL-----STFKLKEEDNVFYFDKVNSLSKILFFTNLGNYFIIDCHLFKDCNWKDLGQH 592 Query: 619 IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF---NRLRTAGKVAIK 675 I +++ LE E+I ++ +T F + + G KK L +F + L+T ++ K Sbjct: 593 ISSIVALESSEKIIRVIEITSFNNYANFILMSKLGYAKKVNLRDFENKSSLKTKTCMSFK 652 Query: 676 LVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL------GEG 729 D DELI +++ E + + G E+ ++ +G + RGIRL Sbjct: 653 -DDNDELIDAQISNDEKMLFILLNNGMYHLVSENELK-VGI-SLKARGIRLLLNLYKHPQ 709 Query: 730 DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV 789 +V I I+ TQ GY K ++ + +R T ++ + + N L + ++ V Sbjct: 710 LQVSGFITVSKYNNIIYLTQGGYIKCWDTSKLESTTRNTPKMLFTPL-KNNILGLQSLAV 768 Query: 790 DDCDQIMMITD 800 + M+ TD Sbjct: 769 TLSNLKMLYTD 779 >UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria RepID=A0Q573_FRATN Length = 742 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 256/735 (34%), Positives = 410/735 (55%), Gaps = 80/735 (10%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ E + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ +G YKKSAR VG Sbjct: 12 SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRLAKI 130 DV+GKYHPHGDSA Y+ +V MAQ FS RY +DGQGN+GSID S AAMRYTE RL+K Sbjct: 72 DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A L+ +L+K TVD+ N+DGT P ++P ++PN+L+NG+ GIAVGM+T IPPHN+TE+ Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVE 249 IN CL + + +IE ++E + PD+P A II+ + I + Y++G G IR +A E Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGS--IRQQAVYE 249 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-DKDGMRIVI--E 306 D +++ ++P+QV+ A ++E+IA +K++++ I ++DES DK+ ++IV+ Sbjct: 250 YD---NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSF--GINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 ++ + + ++ +L + T L+ SF +NM+ L + +P++ NL DI+ ++ +R+ + R Sbjct: 307 TTKNNIKK-IMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLRR 364 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R L K DR HILE L +A NID +I++IR+ P Sbjct: 365 RLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP--------------------- 403 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 +G+ R + L+E QA+AIL++RL+KL +E ++ E KEL + Sbjct: 404 --SGELQTR--------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKE 447 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DLITQEDVVVT 542 L L S + ++++E + + FGD RR++I LE DL+ E V + Sbjct: 448 RELLEGYLNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTII 507 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 LS G++ R KG+ + K ED + N++ ++ FS G+ Sbjct: 508 LSKAGWI------------RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGK 555 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFM-ATANGTVKK 657 YSM V +LP A RG G I +PL++ ++I +I F F+ A+ +G K Sbjct: 556 AYSMYVDKLPSA-RG-YGEHITTYIPLDKQDQIISI----AFVNAAGYFLIASESG---K 606 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 + L T + D D++ + +++ S++G+V+ ++ + A+ Sbjct: 607 AFVIPAEDLITNKITGKNIFDADDVFKFMPFDQDHKMLAISSQGRVI-IRDFASFALLKK 665 Query: 718 TTGVRGIRLGEGDKV 732 G IRL + DK+ Sbjct: 666 GKGKSIIRLDKKDKL 680 >UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma RepID=PARC_MYCPN Length = 789 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/769 (31%), Positives = 393/769 (51%), Gaps = 59/769 (7%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 IE+ S+ YA +I RALPD+RDGLKPV RR+LY M +G YKKSAR VG+ Sbjct: 13 IEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVGE 72 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 ++GKYHPHGD+++YD IVRM+Q + + GN GSIDGD+AAAMRYTE RL+ Sbjct: 73 IMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMRYTEARLSPYGF 132 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 EL+ D+EK+ V FV+N+D +E P V+PT +PNL +NG+SGIA G ATNI PHN+ E+++ Sbjct: 133 ELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGELLD 192 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 G I++ D ++ +++ + GPDFPT ++ + + Y+TG+GK I+A+ E + Sbjct: 193 GLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFVIQAK--YETNT 250 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 G+ I++ EIPY+ KA ++++I EL+ + ++ + ++ D SD+ G+RI+I K Sbjct: 251 AFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIRIIINHKDFLS 310 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 + ++ L+ TQLQV+F +N + + P + L F+ E++ ++L Sbjct: 311 ADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELIINSAKYDLAL 370 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 A R I++ L A++ ID II LIR A +AKT L+ Sbjct: 371 ANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDK------------------- 411 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 Y T QA+AI+ LRL +LT + + L E KEL I R++ Sbjct: 412 ---------------YAFTLNQAEAIVSLRLYQLTNTDIKVLFAEQKELEQTIQTAERLI 456 Query: 493 GSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQEDVVVTLSHQG-YV 549 ++++ + ++QF RR +I + D I ++V + +SH G Y Sbjct: 457 AKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDFIEHKEVGLLISHDGIYF 516 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLL---VANTHDHILCFSSRGRVYSMKVYQ 606 K++P K K E D+L+ V D+ +S G + ++ +Y+ Sbjct: 517 KFEP---------EQLAKHLVEFKSEQ--DQLIFGGVVQNSDYFFMVTSLGNIITVPIYK 565 Query: 607 LPEATRGARGRPIVNLLPLEQDERIT--AILPVTEFEEGVKVFMATANGTVKKTVLTE-F 663 T+ + L +DE++ I+ + E+ + V + + G VK+ L++ Sbjct: 566 TLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLLV-LTSQCGMVKRVELSKVI 624 Query: 664 NRLRTAGKVAIKLVDGDELIGVDL-TSGEDE-VMLFSAEGKVVRFKESSVRAMGCNTTGV 721 N + + L + D+L+ + T GE + V L S+ F + + GV Sbjct: 625 NTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFATFLAEEIPIISNKGIGV 684 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 +GI+L +KV + + + A++ +G V E SR + G Sbjct: 685 KGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYNFEVVELAVASRMSVG 733 >UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteobacteria RepID=A4JTQ2_BURVG Length = 808 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 265/758 (34%), Positives = 396/758 (52%), Gaps = 83/758 (10%) Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79 +YLDYAMSV+ GR LPDV DG KPV RR+LYAMN +G KSARVVGDV+GKYHP Sbjct: 66 AYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARVVGDVLGKYHP 125 Query: 80 HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 139 HGD + YD +VR+AQ FS+RY L+DGQGNFGS DGD AAAMRYTE RL A L+A+++ Sbjct: 126 HGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPFADLLLAEID 185 Query: 140 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 + TVDF NYDG + P ++P ++P LL+NG+SGIAVGMAT+IP HNL EV + C I Sbjct: 186 QGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLREVADACSLLIR 245 Query: 200 DEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRET 258 D + +M +PGPD+P A II+ I + Y GRG + +RAR +E A+ G+ Sbjct: 246 RPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSLEQLAR-GQWQ 304 Query: 259 IIVHEIPYQVNKARLIEKIAELVKEKRVEGISAL------------------RDESD-KD 299 I V E+P+ V+ +++E+I EL K G AL RD+SD K Sbjct: 305 IAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLDSVRDDSDEKH 364 Query: 300 GMRIVIEVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRH 357 +RIV E E ++N L + T L+ + +N+V + G+P+ + + +V Sbjct: 365 PVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGIVPALTEWVEF 424 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R VTRRT L + R HIL+ +A NID +I++IR + P K L+A Sbjct: 425 RYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEP---KRDLIAT---- 477 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 ++L+E QA+ IL++RL++L LE K+ E Sbjct: 478 ------------------------------FHLSEVQAEDILEIRLRQLARLEGIKIEKE 507 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 +L D+ L +L + I +E+E +++FGD RRT I + + + T + Sbjct: 508 LAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKFGDDRRTLIESAEKVTSGAVVPTAD 567 Query: 538 D-VVVTLSHQGYVKYQPLSEYEAQRRGGKG--KSAARIKEEDFIDRLLVANTHDHILCFS 594 D V + +S G+++ R G G S K D + + T + F Sbjct: 568 DPVTIIVSRSGWLRA----------RSGHGIDISTLTFKAGDDLLASIETRTSTSLAVFD 617 Query: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654 + GR Y++ +P RG G P+ +L+ L+ R+T ++ + ++ +A++ G Sbjct: 618 TNGRCYNVASALIPTG-RG-DGVPLTSLIELQGGGRLTHVIVI---DQTANYLIASSGGY 672 Query: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 + + AGK L G+ + +G D V + G++V F S V+ M Sbjct: 673 GYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAG-DTVSAVCSGGRLVLFPLSEVKVM 731 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGA-ILTATQNG 751 GV+ + L + +V++ + GDGA + +T +G Sbjct: 732 -PKGKGVKLMELEARETLVAVAI--GDGASCIVSTTSG 766 >UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammaproteobacteria RepID=A5EV71_DICNV Length = 739 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/622 (37%), Positives = 350/622 (56%), Gaps = 62/622 (9%) Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79 +YLDYAM VI+ RALP + DGLKPV RR++YAM+ LG YKKSAR VGDV+GKYHP Sbjct: 16 AYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVGDVLGKYHP 75 Query: 80 HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMADL 138 HGDSA Y+ +V MAQ FS RY L+DGQGN+GS D S AAMRYTE +L AH L+A+L Sbjct: 76 HGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESKLTAYAHSLLAEL 135 Query: 139 EKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYI 198 ETVD+ N+DGT + P +P ++PN+L+NG SGIAVGM+T+IPPHN+ E++ C A + Sbjct: 136 NPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGEIVAACQALL 195 Query: 199 DDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRE 257 + +S E L++ +P PDFPT + IN R I YRTG G V +RA +E D Sbjct: 196 KNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHIEKD------ 249 Query: 258 TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIEVKRDAVGEV- 315 I++ E+PYQV+ +++ E+I + ++EK++ + A+RDESD K+ R+V+ + + + Sbjct: 250 NIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRSHRIDKKR 309 Query: 316 VLNNLYSQTQLQ--VSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKA 373 ++ +L++ T L+ V +NM+ L G+P+I L I+ ++ +R + V RR + L Sbjct: 310 LMQHLFATTDLEKTVRIQLNMIGL-DGKPQIKPLIVILREWLTYREQTVMRRLSYRLHAL 368 Query: 374 RDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAAR 433 +R IL L +A +D +I++IR +A+TAL+ A Sbjct: 369 NERLEILAGLRIAFLQLDTVIQIIREH---DDAQTALM-------------------QAL 406 Query: 434 PEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILG 493 P LT Q++AIL++RL++L LE ++ E K L+D+ L ++ Sbjct: 407 P---------------LTAAQSEAILNIRLRQLAKLEENAIVQEEKTLIDEQKSLQNLID 451 Query: 494 SADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ--EDVVVTLSHQGYVKY 551 + D ++ I +EL + + D RRT A L Q E V + LS +V+ Sbjct: 452 NRDARLQFIADELAADAQNYADPRRTTFIKPDAKTALPARAWQPSEAVTLVLSKMAWVRL 511 Query: 552 QPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEAT 611 A+ G++ A ++F+ ++ + ILC + GR Y++ + + A Sbjct: 512 -------AKTHQVDGRTLAYKSGDEFLLQIAAKSDQTAILC-GNDGRYYALSLANIASA- 562 Query: 612 RGARGRPIVNLLPLEQDERITA 633 RG G P+ + I A Sbjct: 563 RG-YGEPLSRYFSFAEKTTIVA 583 >UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria RepID=PARC_HAEIN Length = 747 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 246/730 (33%), Positives = 398/730 (54%), Gaps = 86/730 (11%) Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79 +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG + YKKSAR VGDV+GK+HP Sbjct: 21 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKKSARTVGDVLGKFHP 80 Query: 80 HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRLAKIAHELMADL 138 HGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D S AAMRYTE RL+KI+ L+ +L Sbjct: 81 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISEILLNEL 140 Query: 139 EKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYI 198 + TVD+ N+DGT P +P ++P++L+NG++GIAVGMAT+IPPHN+ E+ + + + Sbjct: 141 GQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLL 200 Query: 199 DDEDISIEGLMEHIPGPDFPT-AAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRE 257 D+ ++ ++E + GPDFPT A II+ + I + Y GRG + +RA + E D + Sbjct: 201 DNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMRATWKKE-DGE---- 255 Query: 258 TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG-MRIVIEVKRDAV-GEV 315 II+ +P+Q + +++I +IAE + K++ + +RDE+D + +RIV+ + + V + Sbjct: 256 -IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRIVLVPRSNRVDTDA 314 Query: 316 VLNNLYSQTQLQVSF--GINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKA 373 ++ +L++ T L+ S+ +NM+ L H +P + L +I+ ++ RR VTRR + L K Sbjct: 315 LMAHLFATTDLEKSYRVNMNMIGLDH-KPAVKGLLEILNEWLDFRRTTVTRRLQYRLDKV 373 Query: 374 RDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAAR 433 R HILE L +A NID +IE+IRH P K L+A Sbjct: 374 LSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR-------------------- 410 Query: 434 PEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILG 493 + L+++QA AIL+LRL+ L LE +L E EL + L ILG Sbjct: 411 --------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILG 456 Query: 494 SADRLMEVIREELELVREQFGDKRRTEIT--ANSADINLEDLITQEDVVVTLSHQGYVKY 551 S RL +I++E++ +++ + R +++ + I+ D+ E V V LS G+V Sbjct: 457 SERRLNTLIKKEIQEDAKKYANPRMSQLVEREEAKMISESDMTPAEPVTVILSEMGWV-- 514 Query: 552 QPLSEYEAQRRGGKG-----KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 R KG KS + + ++ ++ ++ S GR Y++ Sbjct: 515 ----------RCAKGHDIDPKSLSYKAGDSYLAH-ACGKSNQAVVFIDSTGRSYALDPLS 563 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 LP A ++G P+ L L I ++ +E +E + MA+ G + Sbjct: 564 LPSAR--SQGEPLTGKLNLPTGATIEYVVMASEQQE---LLMASDAGYGFICKFEDLIAR 618 Query: 667 RTAGKVAIKLVDGDELIGVD-LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 AGK I L + +++ L + V+ ++ G+++ F + + Sbjct: 619 NKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSK--------- 669 Query: 726 LGEGDKVVSL 735 G+G+K++++ Sbjct: 670 -GKGNKMITI 678 >UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hyopneumoniae RepID=Q4A8X9_MYCH7 Length = 846 Score = 364 bits (934), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 222/716 (31%), Positives = 383/716 (53%), Gaps = 43/716 (6%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E+ L ++ Y+ VI RA+PDVRDGLKPV RR+LY+M LG +K YKKSARVVGD Sbjct: 13 LEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKKSARVVGD 72 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 VIGKYHPHGD ++YD +VR+AQ + + LV+ GN GSID D AAMRYTE+RLA+I+ Sbjct: 73 VIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISE 132 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 L+ + K V F N+D +EK P ++P PNLL+NG+ GIA G AT IPPHNL EVI+ Sbjct: 133 HLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPHNLGEVID 192 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 + I + I+IE + I GPDFPT I+ G+ GI +A++TG+GK I+ ++ ++ Sbjct: 193 ATILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGK--IKISSDYKIFE 250 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 K G+ I + IP+ ++K+ LIE+I ++ + ++ GI + D+SD++G+ I+IE+++D Sbjct: 251 KNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGN 310 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 ++++N L +T LQ+ + N VA+ PK++++K++I ++ H R++ FEL K Sbjct: 311 PDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYK 370 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 + R I+ D +I++IR ++ ++G V+ +++ Sbjct: 371 NKKRLEIITGFLKVADITDEVIKVIR------------ASDNSKVGVVSDLIK------- 411 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 + ++ QA+AI +RL +L+ +E + L+E K L IA +++ Sbjct: 412 --------------FFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLI 457 Query: 493 GSADRLMEVIREELELVREQFGDKRRT--EITANSADINLEDLITQEDVVVTLSHQGYVK 550 + D + + L ++ G R+T + IN ++L+ E ++ G K Sbjct: 458 ENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYK 517 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 + + + ++ DF + N + +++G + + V+Q+PE Sbjct: 518 -----KLDIKNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPEL 572 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG 670 + L + +++I ++ FE + + K+ L + +++ Sbjct: 573 NLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQKK 632 Query: 671 KVAI-KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 I + +GDELI V L ++L + + + ++ S + N+TG++ R Sbjct: 633 LQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYTRNSTGIKIFR 688 >UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinomycetales RepID=C6WIH8_ACTMD Length = 1143 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 277/776 (35%), Positives = 397/776 (51%), Gaps = 79/776 (10%) Query: 41 LKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY 100 ++PV Y + V ++ A+ VV + +GKYHPHGD+A+YD +VR+AQ FSL Sbjct: 375 VEPVAPDTTYDIQVDADE--HAFVVDGLVVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNT 432 Query: 101 MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP 160 L+DG GNFGS D D AA RYTE R++ A L+ +L+++TV+F NYDG+ P V+P Sbjct: 433 PLIDGHGNFGSPD-DGPAASRYTEARMSGAAMLLVGELDEDTVEFRPNYDGSLTEPAVLP 491 Query: 161 TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTA 220 PNLLVNG+SGIAVGMATN+ PHNL EV+ + D +E LME IPGPD PT Sbjct: 492 AAFPNLLVNGTSGIAVGMATNMIPHNLGEVVAAARHLVKHPDADLEKLMEFIPGPDLPTG 551 Query: 221 AIINGRRGIEEAYRTGRGKVYIRARAEV-EVDAKTGRETIIVHEIPYQVNKARLIEKIA- 278 ++ G + +AY TGRG V +RA ++ GR+ I V E+PY V ++IEKI Sbjct: 552 GMLLGLDEVRKAYETGRGVVRMRATVTTGPLEGSRGRQAITVTELPYGVGPEKIIEKITD 611 Query: 279 ELVKEKRVEGISALRDESDK-DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL 337 E+ K KR+ GI+ ++D +D+ +G+R+VIE K + +L +LY T L+ SFGIN + L Sbjct: 612 EVNKSKRLTGIADVKDLTDRENGIRLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVL 671 Query: 338 HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELI 397 GQP+ + LK ++ F+ HR EVVTRRT F RK DR H+++ L AL +ID +I+LI Sbjct: 672 VDGQPQTLGLKALLEVFLAHRYEVVTRRTRFRRRKREDRLHLVDGLLKALIDIDKVIKLI 731 Query: 398 RHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQA 457 R + AK LV+ + L+E QA Sbjct: 732 RRSENAQAAKEGLVST----------------------------------FALSETQAAY 757 Query: 458 ILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKR 517 ILD L++LT + +L E + L +IAEL IL L V+ EL V + +R Sbjct: 758 ILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKVLRRVVSNELGKVAKDLSAER 817 Query: 518 RTE---------ITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEA---QRRGGK 565 RT + A+ LE + + V LS G V EA ++R G+ Sbjct: 818 RTTLLDGDLKEVLAASRTSGPLE--VADDPCQVVLSATGLVARTAAESEEAVEGRKRSGR 875 Query: 566 GKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG------ARGRPI 619 K D + + +L +SRGR + V LP +G + G P+ Sbjct: 876 AK-------HDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLPVLPQGEGTLSLSGGVPV 928 Query: 620 VNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 679 L+ LE ER+ I P+ E + + + T G VK V +R+ I L G Sbjct: 929 RELVGLEAGERVVGIAPLGETDS-PGLALGTKQGVVK--VCAPEWPVRSDEFEVIGLKAG 985 Query: 680 DELIGVD-LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP 738 DE++G L G++ ++ S+E ++R+ S VR G G+ GI L VV Sbjct: 986 DEVVGAQWLADGQEALVFVSSEASLLRYAASLVRPQGLRGGGMAGITLPGEASVVFFGAV 1045 Query: 739 RGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE-RNGLVVGAV 787 R D A ++T+T K T YP K RAT GV + + + +GLV+ V Sbjct: 1046 RTDDAEHGEPVVVTSTGQSV-KVTPFDLYPAKGRATGGVRAHRFLKGEDGLVLAWV 1100 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 35/63 (55%), Positives = 45/63 (71%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ E++ SYL+YA SVI RALPD RDGLKPVHRR+L++MN + Y KS+RVVG Sbjct: 27 SLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKSSRVVG 86 Query: 72 DVI 74 D Sbjct: 87 DCF 89 >UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VBP9_9CLOT Length = 759 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 215/608 (35%), Positives = 349/608 (57%), Gaps = 35/608 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 ++ +I V+ E E+ SY+DY+MSVI RALPDVRDGLKPV RR+LY++N L +K + Sbjct: 1 MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLAGS-DKPH 59 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +K AR+VGD +GKYHPHGDS++Y+ +V MAQ + L LVD GNFGS+DG AAAMRYT Sbjct: 60 RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRYT 119 Query: 124 EIRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 E R++K ++ M DL F+ N+DGTE P +P ++PN+LV+GS+GIAVGMATNI Sbjct: 120 EARISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIING-RRGIEEAYRTGRGKVY 241 P HNL EVI+ + Y++D ++ +E L++ + GPDF T IIN + + + Y TG G++ Sbjct: 180 PTHNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIK 239 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDKD 299 +R + E+ D GR++I V EIP+ + A+ ++ +AEL + + + + + D DK+ Sbjct: 240 VRGKVEIR-DIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKN 298 Query: 300 GMRIVIEVKRDAVGE---VVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 G + I+VK+ E ++N LY + L+ +FG+N+ ++ G+P++M L+ I++ + Sbjct: 299 GECLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYDGKPEVMGLRRILSIYTD 358 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 + + + L + I L A+ ID IIE++R + A+AK L+ Sbjct: 359 FKYGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMH---- 414 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 G+ + + R A ++L TE+QA AIL +RLQKL GLE L Sbjct: 415 -GDTSNITFRFKGSEADAKFL-----------CFTEKQADAILAMRLQKLIGLEVNALKK 462 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 E ++ I + ++L S + + + ++ ++E++ R+T I + + + Sbjct: 463 ELEDAEKLIKKYSKLLESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAVE 522 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 +V V L Y+K + Y+ K+ A+I ++D+ NT + + F+ Sbjct: 523 TEVAVLLDRFYYIKVVDANLYD--------KNKAQI-DKDYRFSFKCKNT-ERVGVFADN 572 Query: 597 GRVYSMKV 604 ++Y +KV Sbjct: 573 NQMYMIKV 580 >UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaproteobacteria RepID=PARC_NEIGO Length = 768 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 235/646 (36%), Positives = 341/646 (52%), Gaps = 86/646 (13%) Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79 +YL+YAMSV+ GRALP+V DG KPV RR+L+AM +G KSARVVG+++GKYHP Sbjct: 24 AYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHP 83 Query: 80 HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 139 HGDS+ Y+ +VRMAQ F+LRY L+DG GNFGS DGD AAAMRYTE RL IA L++++ Sbjct: 84 HGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEIN 143 Query: 140 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 + TVDF+ NYDG P +P ++P +L+NG+SGIAVGMAT IP HNL EV +A + Sbjct: 144 QGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIALLK 203 Query: 200 DEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRET 258 + LM++IP PDF II + Y TG+G V +RAR E+E A+ G+ Sbjct: 204 KPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLAR-GQWR 262 Query: 259 IIVHEIPYQVNKARLIEKIAELVKEKRVEG------------------ISALRDESDKD- 299 +IV E+P N A+++ +I E K G I +RDESD + Sbjct: 263 VIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGEH 322 Query: 300 GMRIVIEVKRDAV-GEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRH 357 +R+V E K + + +N L +QT L+ + +N+V + +P NLK I+ ++ Sbjct: 323 PVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLDF 382 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R VTRR F L + R HILE +ID +I++IR + P K L+A Sbjct: 383 RIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDP---KADLMA----- 434 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 ++ LTE QA+ IL++RL++L LE KL E Sbjct: 435 -----------------------------VFGLTEIQAEDILEIRLRQLARLEGFKLEKE 465 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 EL ++ L LG + ++I +E++ +QFGD RRT + + L E Sbjct: 466 LNELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADE 524 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS-- 595 + + LS +G+++ + + S KE D + + L H CF+ Sbjct: 525 PITLILSEKGWIRSRAGHNLDL--------SQTAFKEGDRLKQTL-EGPH----CFTRRH 571 Query: 596 ----RGRVYSMKVYQLPEATRGARGR--PIVNLLPLEQDERITAIL 635 RGR YS+ ++P G RG P+ +L+ L+ + A+L Sbjct: 572 PRFIRGRTYSIDAAEIP----GGRGDGVPVSSLIELQNGAKPVAML 613 >UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms RepID=C0QRN3_PERMH Length = 1217 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 234/710 (32%), Positives = 375/710 (52%), Gaps = 63/710 (8%) Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL K+A E++AD++K TVD +N+D + P+V+P K PNL+ NG+SGIAVG++TNI Sbjct: 534 TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVY 241 PPHN +EV + + ++E L + I GPDFPT I I I + Y GRG V Sbjct: 594 PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 ++ +A +E R II++EIPYQVNK LI++IAELV++ + +GIS LRDESD+DG+ Sbjct: 654 VKGKARIE-RLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGI 712 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RIV+E+KR+A E VL LY +TQLQ S IN+ L QPK ++LK ++ F++HR +V Sbjct: 713 RIVVELKREADPEKVLKKLYRRTQLQKSIPINLTVLVGKQPKTVDLKGLLQEFIKHRVDV 772 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 +TRRT+F+L KA +R HI+E L AL N D +I+++R + + A++ LV Sbjct: 773 ITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEE-------- 824 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + L++ QAQAILD+RL + T LE +KL E +L Sbjct: 825 --------------------------FELSDTQAQAILDMRLSRFTALEGDKLYQEADDL 858 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 +I E RIL S + + V EE++ + E+FGD+R+T I L +E ++ Sbjct: 859 RLKIEEYQRILSSEEEKIRVFIEEIDELLEKFGDERKTVIVEEKE----AGLTFEEHYIL 914 Query: 542 TLSHQGYV---KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + G + + ++ + + + + +K + + + + I + +G+ Sbjct: 915 AVLSSGRILNRRIDDDADKKDIFQKVMNEVVSSVKPGEKLISVQEVESSIPIAFITDKGK 974 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 Y V LP +G +N+ + I E EE ++F+ T NG +K+ Sbjct: 975 AYWSLVADLP------KGEGRINI----DEGEIVGTAFKGEGEED-RLFILTKNGIIKRM 1023 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 + ++ I L + D ++ + +++ +G ++ F+ + VR G Sbjct: 1024 SYEDI-FYKSQNHSIIPLAEDDCVVTAFADDHPSLIGVYTRKGDLLLFERNQVRVTGDKA 1082 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPT-----KSRATKGVIS 773 GV I L EGD V + + I+T T+NGY K E+ T K RA KG+++ Sbjct: 1083 KGVEAIDLDEGDTVAGGFLINSEDLIMTVTKNGYTKLVRKEEFFTKEGKVKKRAQKGLMA 1142 Query: 774 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE--ISIVGRNTQG 821 +K+ + + L V AV V+ + + T+ G +++ V + I + R G Sbjct: 1143 VKLGKDDFLSV-AVPVELDETVYFSTEKGRVLKLIVDQKRIPVAKRTAMG 1191 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/117 (76%), Positives = 100/117 (85%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 EI IEEE+KS+YLDYAMSVIVGRA+PDVRDGLKPV RR+LYAMN LG NK YKKS Sbjct: 3 EIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKKS 62 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 ARVVG+V+GKYHPHGD++VYD +VRMAQ F+LRY L+ GQGNFGSIDGD AAMRY Sbjct: 63 ARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRYC 119 >UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular organisms RepID=A7AVY4_BABBO Length = 1051 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 195/544 (35%), Positives = 303/544 (55%), Gaps = 67/544 (12%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 +L + + + +EL S++ YA+S+I+GRALPD RDGLK VHRR+L+AM V+ + Sbjct: 93 ELLHTVQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTP 152 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Y+K A+VVGDV+GKYHPH D +VYD + R++Q F +R LVDG GNFGS D D AAMRY Sbjct: 153 YRKCAKVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRY 211 Query: 123 TEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 TE RL+ + + L+A++ K TVD + N+D TE P V+P+K+P LL+NGSSGIAVG+ATN Sbjct: 212 TECRLSPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATN 271 Query: 182 IPPHNLTEVINGC-LAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGK 239 IPPHN E++ L + ++ E L+ + GPDFPT I+ + + Y TG+G Sbjct: 272 IPPHNPEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGS 331 Query: 240 VYIRAR---------------AEVEVDAKT----------GRETIIVHEIPYQVNKARLI 274 + ++A+ ++V V+ + R +IIV E+PY V + ++ Sbjct: 332 IMLQAKYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVM 391 Query: 275 EKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG----EVVLNNLYSQTQLQVSF 330 I++ V+ + GIS LRDESD+ G+R+VIE+K+ E ++ L + L F Sbjct: 392 LAISKAVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFF 451 Query: 331 GINMVALHHG--QPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA 388 N +AL +P ++L + ++ R + V +R + +A++R +I++ A+A Sbjct: 452 KCNFIALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFN 511 Query: 389 NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLY 448 ID I+ ++R++ + AEA L E +G Sbjct: 512 KIDDIVHMVRNSSSSAEAMRMLS--------------------------EKRYGG----- 540 Query: 449 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 508 L +QA A+L + L +L+ +E +K+ E KEL + I ILG + +I ELE Sbjct: 541 -LNAEQASAVLRMSLSQLSRIERDKIDLEEKELSESIKRYNHILGDESHIYSLIYSELEH 599 Query: 509 VREQ 512 +R+ Sbjct: 600 IRQN 603 >UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clostridiaceae RepID=A6TSS8_ALKMQ Length = 930 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 231/746 (30%), Positives = 393/746 (52%), Gaps = 71/746 (9%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M EI IE+ L+S+Y+ YAMSVIV RALP++ DG KP HR++LY M+ +G Sbjct: 1 MDKSINEIEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMG-LLT 58 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFS-LRYMLVDGQGNFGSIDGDSA-- 117 K KSA +VG + K +PHGD A+Y+T+V+M + L + VD +GNFG + Sbjct: 59 KGRSKSANIVGTTM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMRE 117 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RYTE +L K E+ ++++K VDFVDNYD T K P ++PT PN+LV + GIAVG Sbjct: 118 ASARYTEAKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVG 177 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTG 236 MA +IP NL EV +AY+ D++I L+E++ PDF T +I +++ Y TG Sbjct: 178 MAEHIPSFNLKEVCEATIAYLKDKEID---LLEYLKAPDFSTGGELIFNEVTMKQVYHTG 234 Query: 237 RGKVYIRARAE-VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 RG +R + V+ D I ++EIPY + +IE I ELVK+ +++ I+ +RDE Sbjct: 235 RGTFKVRGKYRYVKAD-----NAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDE 289 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFV 355 +DK+G++I I++KR + ++ + T+L+ SFG N L +G PK+M +K+I+ ++ Sbjct: 290 TDKNGLKITIDLKRGVNPDDLMVKFFKWTKLEDSFGCNFNILINGHPKVMGVKEILDHWI 349 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW 415 R + R+ FE+ K ++ ++L+ L NI ++++I++ + Sbjct: 350 AFRLSCLKRQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDV--------- 400 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 +A ++E+ + L QA+ I +++L+ L E +L Sbjct: 401 ----IANLMEQ---------------------FDLNLAQAEYIAEIKLR---SLNQELIL 432 Query: 476 DEYKELLDQIAELLR---ILGSADRLMEVIREELELVREQFGDKRRTE-ITANSADINLE 531 + KE+ EL R +L + E+I +L+ + E +G R+T+ I N ++ E Sbjct: 433 KKIKEISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYGIPRKTDIINENEVEVLSE 492 Query: 532 D-LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHI 590 + LI ++ + L+++GY+K L+ + R G K +K+ D+I + + + Sbjct: 493 EILIENYNMKLFLTNEGYIKKISLA---SLRSSGDHK----LKDNDYIVQEIDGTNRGEV 545 Query: 591 LCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 650 L FS++ VY +K Y+L ++ G+ + N+L L DE I I+ +++ + F Sbjct: 546 LLFSNKETVYKIKAYELEDSKASNLGQYLNNVLGLSSDEIILHIVCTEDYQGHMLFFF-- 603 Query: 651 ANGTVKKTVLTEFNRLRTAGKVAIKLVDGDE-LIGVDLTSGEDEVMLFSAEGKVVRFKES 709 NG K +T + +T K GD L+ + + E+M S K + F Sbjct: 604 ENGKGAKIPITSY-ETKTNRKQLANAYSGDSPLVYISSIEEDLEMMATSNLNKTLIFNTE 662 Query: 710 SVRAMGCNTTGVRGIRLGEGDKVVSL 735 + + N+ +G+++ + K +SL Sbjct: 663 EMSPI--NSRNSKGVQVFKCKKGISL 686 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 221/737 (29%), Positives = 389/737 (52%), Gaps = 77/737 (10%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 L +YL YA+ VI RA+ + DG KP HR++L+ ++ N +NK KSA +VG + Sbjct: 676 LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHE-SNLYNKR-TKSAHIVGSNMS- 731 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS--AAAMRYTEIRLAKIAHEL 134 + HGD ++Y+T+VRMAQ +L Y V+G+GNFG S A MRYTE + I E Sbjct: 732 LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYTEAGASNINKEF 791 Query: 135 MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 194 + K VDFV N+DG ++ P ++PT PN+LVN + GIAVGMA+ P NL EV + Sbjct: 792 FHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATPSFNLKEVCDLT 851 Query: 195 LAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAK 253 +AYI D +I + +++ PDF T I+ + + Y TG+G V +RA+ EV+ + Sbjct: 852 IAYIKDTNIVVS---DYLLCPDFATGGFIVRDVDKLNQIYETGQGSVTLRAKYEVKDNE- 907 Query: 254 TGRETIIVHEIPYQVNKARLIEKIAELVKEKR---VEGISALRDESDKDGMRIVIEVKRD 310 IIV EIPY N+ +++ I L +E + + I+ + D +D+ GM I I++K++ Sbjct: 908 -----IIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKGMSITIKIKKN 962 Query: 311 AVGEVVLNNLYSQTQLQVSFGINM-VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 E+++ LY+ T+LQ S+ +NM + P+++++K I+ +++ RR ++R + ++ Sbjct: 963 TNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRRMCISRVSNYD 1022 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 + + H+L A + L +ID ++ + R+A D Sbjct: 1023 KKDKEHKLHLLNAFKIILTDIDALVHITRNAI---------------------------D 1055 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ-IAEL 488 D + L+ F + ++QA+ + +++L+KL ++ ++ L Q I++L Sbjct: 1056 DDDMIKQLQLYFKI-------DQEQAEYVSNIKLKKLNKNNIIEITEQQITALQQEISDL 1108 Query: 489 LRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDL--ITQEDVVVTLSHQ 546 I R+ +I ++L+ +R+++ R+TEI IN+ED+ +T ED+ + + Sbjct: 1109 KNIQNDETRINNIIIQQLQNIRDKYKIPRKTEI------INVEDIPSVTLEDIKIEDFNP 1162 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 V L+E + ++ + ++K++D I + N D +L F+++G V KVY+ Sbjct: 1163 TLV----LTEQQYIKKNRVFSQSQKLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYE 1218 Query: 607 LPEATRGARGRPIVNLL--PLEQDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEF 663 L E G + NLL LE DE++ I ++ V VF NG V + L ++ Sbjct: 1219 LDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTKNYKGSVITVF---ENGNVARIDLKQY 1275 Query: 664 NRLRTAGKVAIKLVDGD-ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC-NTTGV 721 + + +V + + D +L+ + + + + ++L S EGK + S +R NT GV Sbjct: 1276 -KTKQNRQVPMDAYNTDSKLVSISVITDDTNILLVSQEGKALIINTSQIRPTKSRNTQGV 1334 Query: 722 RGIRLG-EGDKVVSLIV 737 G+++ E +KV+ I+ Sbjct: 1335 AGMKIDTEHNKVIGSII 1351 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 10/167 (5%) Query: 675 KLVDGDELIGVDLTSGEDEVMLFSAEG-----KVVRFKESSVRAMGCNTTGVRGIRLGEG 729 KL D D+++ + +D+++LF+ +G KV E G + G L Sbjct: 1183 KLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLEND 1242 Query: 730 DKVVSLIVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQ 788 +KV+ + + G+++T +NG R + +Y TK + + + LV +V Sbjct: 1243 EKVIYISTTKNYKGSVITVFENGNVARIDLKQYKTKQNRQVPMDAYNTDSK--LVSISVI 1300 Query: 789 VDDCDQIMMITDAGTLVRTRVSEIS-IVGRNTQGVILIRTAEDENVV 834 DD + I++++ G + S+I RNTQGV ++ + N V Sbjct: 1301 TDDTN-ILLVSQEGKALIINTSQIRPTKSRNTQGVAGMKIDTEHNKV 1346 >UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H694_9FIRM Length = 749 Score = 301 bits (770), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 228/732 (31%), Positives = 362/732 (49%), Gaps = 61/732 (8%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 I L+++Y+ YAMSVIV RALP++ DG KP HR++LY M +G A KSA +VG Sbjct: 34 ITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGL-LKGARTKSANIVGS 91 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPF-SLRYMLVDGQGNFGSIDGD--SAAAMRYTEIRLAK 129 + +PHGD+A+YDT+VRM + SL VD +GNFG S AA RYTE +L Sbjct: 92 TM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLEG 150 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 + EL D++KETVDFV NYDGT P ++P P +L N + GIAVGMA NI NL E Sbjct: 151 VCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAE 210 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEV 248 + +A + D I M P PDF I+ + E Y GRG + +RAR V Sbjct: 211 LCATTVALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRGSIKVRARYNV 267 Query: 249 EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK 308 G + + +IP +++KIAELVK +++ IS +RDE+D +G+++ +++K Sbjct: 268 ----VPGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLKLTLDLK 323 Query: 309 RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 R E ++ LY T L+ SF N L GQP++M +++I+ + R E V RRT + Sbjct: 324 RGVDPEKLMAKLYKTTPLEDSFSCNFNVLVSGQPRVMGVREILQEWTAFRMECVRRRTYY 383 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 +L R H+L+ LA L +ID I +IR E +T +V N +G Sbjct: 384 DLHGKEKRLHLLKGLAAILLDIDKAIHIIRT----TEEETEVVPN-LMIG---------- 428 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 FG+ E QA + +++L+ L K E ++L IA+L Sbjct: 429 ------------FGI-------DEVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADL 469 Query: 489 LRILGSADRLMEVIREELELVREQFGDKRRTEITAN---SADINLEDLITQEDVVVTLSH 545 IL R+ +I EL V +++ RR+EI + E++I V V + Sbjct: 470 NDILAKPARIRRIIINELNDVAKKYAQPRRSEILYDLPEEESGAEEEVIPDYPVTVFFTR 529 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 +GY+K P ++ R G A ++KE D I + + L F+ + +VY +++ Sbjct: 530 EGYLKKIPP---QSLRTAG----AHKLKEGDEIIHQVETRNNVEALFFTDKQQVYKVRLN 582 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 +L + G + L +++ E I A++ ++ V F A G K L + Sbjct: 583 ELEDGKVAQMGIYLPGRLGMDEGENILAMVITGDYSGYVLFFF--AGGKCAKIPLASYAT 640 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC-NTTGVRGI 724 + K+ D + L + + E+ + ++ G+++ + + A ++ GV + Sbjct: 641 KQNRRKLLKAYSDKEPLAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTTRDSQGVAVV 700 Query: 725 RLGEGDKVVSLI 736 L + + S++ Sbjct: 701 TLKKNQTIASVV 712 >UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacteria RepID=GYRA_SPICI Length = 227 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/218 (62%), Positives = 173/218 (79%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D +I ++I +E+K+ +LDYAMSVIV RA+PDVRDGLKPVHRR++YAM L + K Sbjct: 10 DYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQ 69 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 +KKSAR+VG+VIGKYHPHGD+AVY+ +VRMAQ FS RY L+DG GNFGS+DGD AAMRY Sbjct: 70 HKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRY 129 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE +++KIA E++ D+EKET F+DNYDG+E+ P +P PNLLVNG+SGIAVGMATNI Sbjct: 130 TEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNI 189 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTA 220 PPHNL EVI+G +A + +I+ LM+ I GPDFPT Sbjct: 190 PPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227 >UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2480 Length = 417 Score = 284 bits (727), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 156/407 (38%), Positives = 256/407 (62%), Gaps = 11/407 (2%) Query: 448 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 507 + L+E QA+AIL ++L++LTGLE E + +E +ELL I +L IL ++ +I+ EL Sbjct: 14 FGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILADEQEILNIIKNELI 73 Query: 508 LVREQFGDKRRTE-ITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG 566 ++E++GD+RR++ I + E+LI +ED VV L+ + Y+K S+Y Q RGGKG Sbjct: 74 EMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVLLTSENYIKRTLASDYRKQNRGGKG 133 Query: 567 KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE 626 K KE D I+ ++ A THD +L F++RGRV+ +K Y++P A+ A+G VNLL L+ Sbjct: 134 KRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAKGVAAVNLLQLQ 193 Query: 627 QDERITAILPVTEFEEGVK----VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL 682 +E+ITAI+ +FE+ K +FMAT GT+KKT + ++ +RT G +AIKL DGDEL Sbjct: 194 PEEKITAII---KFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDEL 250 Query: 683 IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742 + +SG D++++ ++ G+ +RF E R+MG GVRG+RL D VV + + D Sbjct: 251 RWIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRGVRLRPNDSVVGMDIANDDR 310 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG--LVVGAVQVDDCDQIMMITD 800 +L ++NGYGK T ++ +P+ R G+ + VT + G + V +Q DD + +++ T Sbjct: 311 TLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIISVKTIQQDDIEALLVSTQ 370 Query: 801 AGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 G +R + +I ++GR TQGV +++T++D++V + ++E E+ Sbjct: 371 -GQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMSERSSNEE 416 >UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria RepID=Q4N468_THEPA Length = 1014 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 194/635 (30%), Positives = 321/635 (50%), Gaps = 108/635 (17%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + + + SS+L YA+S+I+GRALPD RDGLK VHRR+++AM++L D N Y+K A+VVGD Sbjct: 104 LNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNGQYRKCAKVVGD 163 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 V+G YHPH D +VYD + R++Q F ++ L+DG GNFGS + D AAMRYTE RL + Sbjct: 164 VLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAAMRYTECRLTNFSK 222 Query: 133 ELM-ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 +M D+ T+D++ N+D T P V+P ++PN+L+NGSSGIAVG+ATNIPPHN TEVI Sbjct: 223 MIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLATNIPPHNPTEVI 282 Query: 192 NGCLAYIDDE-------------DISIEGL--------MEHIPGPDFPTAAII-NGRRGI 229 N + +I D +++GL + + GPDFPT +I R + Sbjct: 283 NATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDFPTGGVIRTTREAM 342 Query: 230 EEAYRTGRGKVYIRARAEVEVDAK----------------TGRETIIVHEIPYQVNKARL 273 + Y +G+G V I+++ E + R +I++++IPY + Sbjct: 343 RKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIVINQIPYNTRINDI 402 Query: 274 IEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQ--LQVSFG 331 IE I +K + G++ ++DESD++G RIV+E+KR+ + + + ++ Q + ++ Sbjct: 403 IENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMAKLQRLTEYNYK 462 Query: 332 INMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANID 391 N + L +P NL I+ ++ R +V+ R+ L K + I+ A + NI+ Sbjct: 463 CNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKNLDIINAYIIIYLNIN 522 Query: 392 PIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLT 451 II N +Q + L+ EF + D Sbjct: 523 TII------------------NSFQ-----------NHQKGVYKVLKEEFKLND------ 547 Query: 452 EQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVRE 511 Q ++++ L L++L L + L ++ E QI +L + L I +L +++ Sbjct: 548 -DQMKSVMRLTLRQLNQLNIDNLKEKSGEYTKQIEFYENVLNNDTNLYNEIISDLTELKD 606 Query: 512 QFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR 571 F + +R + ++ + +G S +E G +G Sbjct: 607 HFKNIKR-------------------NTLIIYTDEG-------SNFETTVEGVEGPEGT- 639 Query: 572 IKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 ED +D +V + D+I+ ++S GR+ +K+ Q Sbjct: 640 --SEDKVDPSVVE-SDDNIIIYNSLGRISKIKLDQ 671 >UniRef50_C3X0L8 DNA gyrase subunit A (Fragment) n=1 Tax=Fusobacterium sp. 7_1 RepID=C3X0L8_9FUSO Length = 379 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 251/381 (65%), Gaps = 6/381 (1%) Query: 472 EKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE 531 EK+ E+KE+ I EL +L +++ +++++EL ++E++ DKRRT+I +I E Sbjct: 1 EKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPE 60 Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 591 DLI E++++T +++GYVK S+Y+AQRRGGKG SA E+D+ +++ A+T D I+ Sbjct: 61 DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIM 120 Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 F+ RG+VY+++ Y++P+ +R +RGR + N++ L + E++ + + EF +V T Sbjct: 121 VFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPEKEVVFITK 180 Query: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS--GEDEVMLFSAEGKVVRFKES 709 NG +KKT L EF + +G +AIK + D++I V L ++E+++ + +G RF Sbjct: 181 NGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTD 240 Query: 710 SVRAMGCNTTGVRGIRLGEGDKVVS-LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 768 ++RA G +T GV+ I L +GD VVS +++ + ILT T+NGYGKRT++ EYP +R Sbjct: 241 TIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKRTSLDEYPQYNRGG 300 Query: 769 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTA 828 KGVI++KV E+NG VV ++V + +++M IT G ++RT ++EIS +GR TQGV +++ A Sbjct: 301 KGVINLKVNEKNGKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIGRATQGVRIMKVA 360 Query: 829 EDENVVGLQRVAEPVDEEDLD 849 +DE V + ++ + EEDL+ Sbjct: 361 DDEKVAAITKIKK---EEDLE 378 >UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LCM1_PLAKH Length = 1173 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 158/539 (29%), Positives = 284/539 (52%), Gaps = 66/539 (12%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-YKK 65 E V I + L ++L YA +I+ R L D RDGLK V RR++++M + K+ YKK Sbjct: 172 EYHDVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKSSYKK 231 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L++G GNFGS++ + AAAMRYTE Sbjct: 232 CARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSVEYN-AAAMRYTEA 290 Query: 126 RLAKIAHELMAD-LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++++ D + E +++V N+DG E P V+ +K+P LL+NG SGIAV + +NIP Sbjct: 291 KVSNFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGCSGIAVSILSNIPC 350 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYRTGRGKVYIR 243 HNL +VIN ++++ D +I + L I GPDF T II + ++ Y+TG+G + IR Sbjct: 351 HNLVDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQNVYQTGKGNIEIR 410 Query: 244 ARAEVE-----------------VDAKT----GRETIIVHEIPYQVNKARLIEKIAELVK 282 + +E V+A+ G + +++ +P V LIE + ++ Sbjct: 411 SNVFLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVKPNELIENMINILN 470 Query: 283 EKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVV---LNNLYSQTQLQVSFGINMVA 336 EK+ E + +RDES+K+ MRIV+E+++++ E + ++ ++ TQ+Q+++ N V Sbjct: 471 EKKNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKYTQMQITYHCNFVC 530 Query: 337 L-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 + H +LK + + +R + + + + + HI++ + I II Sbjct: 531 IGHQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDLYILIQKKILEIIS 590 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 ++ E K N + L + Q Sbjct: 591 FLQKNQNIEEIKNFFKEN----------------------------------FKLNDYQI 616 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFG 514 IL +++QKL +++ +++L ++ + ++ + D++ +I ++L ++ ++G Sbjct: 617 HHILSMKIQKLVNIKNVDFCTHKEQILARMEQNRDLISNVDKIKRLIIDQLTYIKNKYG 675 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/272 (21%), Positives = 119/272 (43%), Gaps = 47/272 (17%) Query: 578 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV 637 + + ++ D +L S+ + Y + VY L ++ ++G PI ++ ++ I + Sbjct: 881 VKKSILCRNKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKN-----ITGM 935 Query: 638 TEFEEGVK-VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVML 696 T+FEE K + + + NG +K F + + G I+L + I + D ++ Sbjct: 936 TKFEENKKYLIVCSENGKMKVINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFSDNCIV 992 Query: 697 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR------GDGAILTATQN 750 +A G +++F ++ + N+ G + I LG+ DKVV L+ G+ I+ ++ Sbjct: 993 GTASGHIIQFPLANFKISKKNSLGNKCINLGKNDKVVDLLAYDNDEKNVGNFQIIFLSKG 1052 Query: 751 GYGKRTAVAEYPTKSRATKG--VISIKVTERNGLVVGAV--------------------- 787 G+GK + E + + KG ++ K +R+ ++ G V Sbjct: 1053 GHGKMINLEELKVQKKKGKGYKIMKFKRAKRDAVLQGEVAKEEDKENKNHEKYVKDADEF 1112 Query: 788 ---------QVDDCDQIMMITDAGTLVRTRVS 810 + +D D ++MITD L+R ++ Sbjct: 1113 LGFKLYDMTKKNDNDFLIMITDHAILIRKNIT 1144 >UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from direct assay n=9 Tax=Plasmodium RepID=Q8I0X3_PLAF7 Length = 1222 Score = 265 bits (677), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 169/539 (31%), Positives = 282/539 (52%), Gaps = 66/539 (12%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK-AYKK 65 E V I E L S+L YA +I+ R L D RDGLK V RR++++M + +K YKK Sbjct: 171 EYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKK 230 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L+ G GNFGS++ + AAAMRYTE Sbjct: 231 CARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVEYN-AAAMRYTEA 289 Query: 126 RLAKIAHELMAD-LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++++ D + E V+++ N+DG E+ P V+ +KIP LL+NG SGIAV + ++IP Sbjct: 290 KISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPC 349 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI-EEAYRTGRGKVYIR 243 HNL +V N C+ ++ +E+I + L I GPDF T II + I + Y +G+G IR Sbjct: 350 HNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIR 409 Query: 244 ARAEVEV---------------------DAKTGRETIIVHEIPYQVNKARLIEKIAELVK 282 + E D + II+ +P V LIE I L+ Sbjct: 410 SNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKPNELIENIINLLN 469 Query: 283 EKRVEGISAL---RDESDKDGMRIVIEVKRDAVGEVV---LNNLYSQTQLQVSFGINMVA 336 +K+ E + L RDES+K+ MRIV+E+K+ + E + L+ L+ T +Q+S+ N V Sbjct: 470 DKKNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVC 529 Query: 337 L-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 + + +LK I + +R + + +T +E+ K ++ L + + L + I++ Sbjct: 530 IGYENTYTQFSLKSFIKLWCNNRIKFI--KTNYEI-KNKNLQKQLNIIDLYLIIQNKILD 586 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 +I ++ + +L+ F L +Q Sbjct: 587 II------------------------TFFQKNQNIEQIQLYLKNNFK-------LNPEQI 615 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFG 514 + IL ++LQKL +++ + + +++ QI I+ + + +I +EL ++ ++G Sbjct: 616 KYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYG 674 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 15/200 (7%) Query: 578 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV 637 I + ++ D IL + + + + VY L ++ ++G PI + + + IT I Sbjct: 916 IKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQI--IHSSKNITGI--- 970 Query: 638 TEFEEGVKVFMATA-NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVML 696 T+F+E K + + NG +K F + + G IKL + I + D ++ Sbjct: 971 TKFQENKKYLIVCSENGKMKVINNDVFLKRKKKG---IKLFKNKKNIYFSYCNFNDNCIV 1027 Query: 697 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG------DGAILTATQN 750 + G +++F SS + N+ G + I L + DKVV L+ + I+ T+N Sbjct: 1028 GTKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKN 1087 Query: 751 GYGKRTAVAEYPTKSRATKG 770 G+GK + E + + KG Sbjct: 1088 GFGKMINLNELKIQKKKGKG 1107 >UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodium RepID=A5K033_PLAVI Length = 1263 Score = 265 bits (676), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 164/540 (30%), Positives = 280/540 (51%), Gaps = 68/540 (12%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK-AYKK 65 E V I E L ++L YA +I+ R L D RDGLK V RR++++M + K +YKK Sbjct: 149 EYYDVEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKK 208 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L++G GNFGS++ + AAAMRYTE Sbjct: 209 CARIVGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVEYN-AAAMRYTEA 267 Query: 126 RLAKIAHELMAD-LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++++ D + +E V++V N+DG E P V +K+P LL+NG SGIAV + +NIP Sbjct: 268 KISNFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPC 327 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYRTGRGKVYIR 243 HNL +VIN ++++ + I + L I GPDF T II + ++ Y TGRG + IR Sbjct: 328 HNLVDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIR 387 Query: 244 ARAEVE----------------------VDAKTGRETIIVHEIPYQVNKARLIEKIAELV 281 + +E +D++ G + +++ +P V LIE + ++ Sbjct: 388 SNVFLEYTKDDKQYVTHVNNLANLHPEDIDSR-GSKKLVIKNLPPNVKPNELIENMINIL 446 Query: 282 KEKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVV---LNNLYSQTQLQVSFGINMV 335 EK+ E + +RDES+K+ MRIV+E++++ E + L+ ++ TQ+Q ++ N V Sbjct: 447 NEKKNEHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFV 506 Query: 336 AL-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPII 394 + H +LK + + +R + + + + + HI++ + I II Sbjct: 507 CIGHQNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEII 566 Query: 395 ELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQ 454 ++ E K N + L + Q Sbjct: 567 SFLQKNQNIEEIKNFFKKN----------------------------------FQLNDYQ 592 Query: 455 AQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFG 514 Q IL +++QKL +++ +++L ++ + ++ DR+ +I EEL ++ ++G Sbjct: 593 IQHILSMKIQKLVNIKNVHFGPHKEKILTRMRDNRDLIADVDRIKRLIIEELAYIKNKYG 652 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 17/218 (7%) Query: 578 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV 637 + + ++ D +L S+ + Y + V L ++ ++G PI ++ + +I + Sbjct: 943 VKKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSK-----SITGM 997 Query: 638 TEFEEGVK-VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVML 696 +FEE K + + + NG +K F + + G I+L + I + D ++ Sbjct: 998 AKFEESKKYLIVCSENGKMKIINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFSDNCIV 1054 Query: 697 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA------ILTATQN 750 +A G +++F S+ + N+ G + I LG+ DKVV L+ D I+ ++ Sbjct: 1055 GTASGHIIQFPLSNFKISKKNSLGNKCISLGKNDKVVDLLTYENDEKSVKKFQIIFLSKG 1114 Query: 751 GYGKRTAVAEYPTKSRATKG--VISIKVTERNGLVVGA 786 G+GK + E + R KG ++ K +R + G Sbjct: 1115 GHGKMVNLGELKVQKRRGKGYKIMKFKRAKRGAPIQGG 1152 >UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976864 Length = 664 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 210/726 (28%), Positives = 356/726 (49%), Gaps = 92/726 (12%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK--KS 66 T NIE+ ++++ ++Y+ +++ RALPD+RDGLKPVHRR+LY+M + KA+K KS Sbjct: 4 TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMYL-----QKAFKFTKS 58 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS--AAAMRYTE 124 A V G V+ K HPHG S Y ++V M Q +++G+GNFG AA RY+E Sbjct: 59 ANVAGQVM-KLHPHGSS--YGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSE 115 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 ++L++I+ ++M + +K VDF+DNYDGT K+P+V+P K P++L +SGI VG +++IP Sbjct: 116 VKLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPS 175 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII----NGRRGIEEAYRTGRGKV 240 NL E+ + YI+ + + + PDF T +I N R + E GRG V Sbjct: 176 FNLKELTEAIVKYIETGE-------KTVLVPDFATGGLIVKEDNVFRQLNEE---GRGTV 225 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IR +AE+ + I + EIPY + +IEKI EL K +++ ++ ++D + G Sbjct: 226 KIRGKAEI------VKNEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKG 279 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 M I I +R+ V+L LY T LQ +F NM L PK++ + I ++ R Sbjct: 280 MLITITARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTT 339 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + R ++ + H+L+ L L +ID IE+IR Sbjct: 340 CIKRGLSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIR---------------------- 377 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 R+ D P L+ FG+ +QA+ + +++L+ + K +++ + Sbjct: 378 -----RSSQDQIEPN-LQKHFGI-------DFEQAKEVANMKLRNINREYIIKKIEDIDK 424 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT--ANSADINLEDLITQED 538 I I+ S D++ ++I + L +E++G +RRT+I + L + + Sbjct: 425 FEKTIENYKMIVKSQDKINQIIIKGLNETKEKYGKERRTKIVELTEVKPVRLVEEVPNYA 484 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V + L+ +GY Y+ KG +K D + ++ IL F S Sbjct: 485 VTIYLTKEGYC-------YKF-----KGNQEPNLKPGDEVLKVFETENKAEILIFGSDRV 532 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT-ANGTVKK 657 + +++ + E A G + N++ +D+ IT I+ + + K +A +N + K Sbjct: 533 CHKVELKDIDETRANALGTYLPNMI---RDKNIT-IVSYSILDSTHKFIIAAYSNNRIAK 588 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVM--LFSAEGKVVRFKESSVRAMG 715 L F RT K + L +L+ D+ + ED+V L + + K+ ++ G Sbjct: 589 INLEAFQGNRTILKNSYCL--KQDLL--DMITLEDDVSLNLLTDKSKLTVDTKNFNLTNG 644 Query: 716 CNTTGV 721 N TGV Sbjct: 645 RNATGV 650 >UniRef50_A4ECR3 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECR3_9ACTN Length = 339 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 135/339 (39%), Positives = 213/339 (62%), Gaps = 7/339 (2%) Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 +VVT++H GYVK P++ Y AQ+RGGKG S +KE+D ID + +A+TH+++L FSS+G+ Sbjct: 1 MVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGK 60 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 VY +KV++LP TR ARG IVNLLP E+ E+I +++ EF + AT +G VKKT Sbjct: 61 VYRLKVHELPVGTRQARGTAIVNLLPFEEGEKIASVISCREFPANEYLMFATKSGMVKKT 120 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 V++ ++R R G +AI L D D L+ V D+++L + GK + F E VRA G +T Sbjct: 121 VMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRATGRDT 180 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 +GVRGI + +G V+ + V G+G + T+ GYGKRT VA+YP ++R +GV +I++TE Sbjct: 181 SGVRGIGMKDGVSVLGMEVTNGNGDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTE 240 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 R G + V ++ ++T+ T++R + EIS GR TQGV ++ +++ + + R Sbjct: 241 RKGNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTVDDNDRICAVAR 300 Query: 839 VAEPVDEEDLDTIDGSAAEGDDEIAPEVDV---DDEPEE 874 + ++ + +G+ A D E P VD+ +D PE+ Sbjct: 301 MTAAKEKPEG---EGAEAAADTEETP-VDLGDGNDMPED 335 >UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=Mycobacterium RepID=A4T3N2_MYCGI Length = 716 Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 162/501 (32%), Positives = 254/501 (50%), Gaps = 51/501 (10%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMN----VLGNDWNKAYKKSA 67 + +E L +A+ + RA+P DGLKP RR+LY M+ + GN +KS+ Sbjct: 16 SADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNK----PQKSS 71 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++ V G HPHG +++Y MA F R ++DGQG F I GD AA RYTE+RL Sbjct: 72 KICSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADRYTEMRL 130 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 + L A+L+ V V +DG P V+P + P LL NG+ GIA G AT +P HN Sbjct: 131 SAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNP 190 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EV+ C A + +++ + L++ IPGPD+ A + G G+ E TGRG + R Sbjct: 191 REVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLREYITTGRGLFTV--RGT 248 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIE 306 V VD K I+ E+P V + ++I LV+ + G++ + D +D ++G+RIV+ Sbjct: 249 VSVDGK----NCIITELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRIVVT 304 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTRR 365 KR E + + L + T L+ SF ++VAL + P+ +++++IAAF+ R VV R Sbjct: 305 AKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVVLHR 364 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + + L K R H++ L +ID + +IR + T +A+ L E Sbjct: 365 SEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGL-------------QE 411 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 R DA QA +L L+L++LT L+ +L E ++L + Sbjct: 412 RFAIDAV---------------------QADYVLALQLRRLTKLDVIELQAEAEKLDAEF 450 Query: 486 AELLRILGSADRLMEVIREEL 506 A L ++ + D +VI +EL Sbjct: 451 AALTELVSNPDARRKVIDQEL 471 >UniRef50_Q5CB96 ATP-dependent Clp protease, ATPase subunit n=1 Tax=Thermotoga sp. KOL6 RepID=Q5CB96_9THEM Length = 652 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 215/355 (60%), Gaps = 6/355 (1%) Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 +L+ +I+E+ IL ++ E++++E + ++E++GD RRT+IT ++E+LI +ED+ Sbjct: 291 KLVKKISEVKEILEKDVKVKEIMKKEFKYLKERYGDPRRTKITDEELRYDMEELIAEEDI 350 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V+TLSH+GY+K PLS Y +QRRGGKG + +++ E+D ++ ++V L ++ G+ Sbjct: 351 VITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNLGKA 410 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 Y +K YQ+ R RGR I L LE+ E++ A+ P+ +G + + T +G +K+T Sbjct: 411 YVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLN--GKGKDLVIVTKHGKIKRTA 468 Query: 660 LTEF-NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE-GKVVRFKESSVRAMGCN 717 L EF N G AI++ GDE+I + E ++ + + G V+RF S VR MG N Sbjct: 469 LEEFENATSNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGRN 528 Query: 718 TTGVRGIRLGEGDKVVSL-IVP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 GV+ I+L D+VVS+ +VP +G ILT T+ G+GKRT V Y + R G+ +I Sbjct: 529 AAGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGFGKRTPVELYRIQKRGGTGLRNIS 588 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 ++ G VV V ++I+++T G ++R VS+I I+GR T+GV LI +D Sbjct: 589 DVKKTGYVVAVRYVRGDEEIVVVTKNGMMIRIPVSDIGIIGRITKGVKLIELGDD 643 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 7/197 (3%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 V + G +K T L+ + R GK KL + DE+ V +T + + GK Sbjct: 351 VITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNLGKA 410 Query: 704 VRFKESSVRAMGCNTTGVR---GIRLGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVA 759 K + G NT G + L E +KVV+L G G ++ T++G KRTA+ Sbjct: 411 YVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNGKGKDLVIVTKHGKIKRTALE 470 Query: 760 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 819 E+ + + +GV +I++ + ++ V + +++ T G ++R VS++ +GRN Sbjct: 471 EFENAT-SNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGRNA 529 Query: 820 QGVILIRTAEDENVVGL 836 GV I+ D+ VV + Sbjct: 530 AGVQAIKLQPDDEVVSM 546 >UniRef50_A2I985 DNA gyrase subunit A (Fragment) n=5 Tax=Campylobacterales RepID=A2I985_9PROT Length = 262 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/262 (41%), Positives = 169/262 (64%), Gaps = 3/262 (1%) Query: 531 EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHI 590 EDLI E +VVT++H GYVK P+ YE Q+RGGKGK A ++DFI+R V+NTHD + Sbjct: 1 EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60 Query: 591 LCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 650 + ++ G++Y +KVY++PE +R A+G+ +VNL+ L DE+I AI+P +F+E + T Sbjct: 61 MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESKSLVFFT 120 Query: 651 ANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKES 709 NG +K+T L EF+ +R+ G AI L D DE++ + + + +M+F++ G+ +RF+ Sbjct: 121 RNGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180 Query: 710 SVRAMGCNTTGVRGIRLG-EGDKVVSL-IVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 R G +T GVRGI+ + D VV ++ + ILT ++ G GKRT + EY +RA Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDIVVDADVIDNEEQEILTVSEKGIGKRTTIEEYRLTNRA 240 Query: 768 TKGVISIKVTERNGLVVGAVQV 789 GVI++K++ + G +VG V V Sbjct: 241 GSGVIAMKLSPKTGNIVGEVLV 262 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 16/200 (8%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGEDEVMLFSAEG-- 701 V T NG VK+ + + R + GK VA+ D D + +++ D +M + G Sbjct: 10 VVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQL 69 Query: 702 ---KVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD----GAILTATQNGYGK 754 KV + E S A G + +R D+ + I+P D +++ T+NG K Sbjct: 70 YWLKVYKIPEGSRTAKGKAVVNLINLR---ADEKIMAIIPTPDFDESKSLVFFTRNGVIK 126 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 RT++ E+ + + GV +I + + + +V + IM+ T G +R + + Sbjct: 127 RTSLNEFS--NIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEKTRD 184 Query: 815 VGRNTQGVILIRTAEDENVV 834 GR+T+GV I+ D ++V Sbjct: 185 QGRSTRGVRGIKFKIDTDIV 204 >UniRef50_Q00TB8 DNA gyrase A subunit (ISS) (Fragment) n=1 Tax=Ostreococcus tauri RepID=Q00TB8_OSTTA Length = 475 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 88/154 (57%), Positives = 120/154 (77%), Gaps = 1/154 (0%) Query: 41 LKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY 100 +KPVHRR+L+ M+ LG +K ++K ARVVGDV+GK+HPHGD AVY+ +VR+AQ FS+ Sbjct: 31 VKPVHRRILFGMHELGLRSDKPHRKCARVVGDVLGKFHPHGDGAVYEALVRLAQDFSMSA 90 Query: 101 MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVM 159 LVDG GNFGS+D D AAMRYTE RL K++ + L+AD+ E V F + +DG++ P+V+ Sbjct: 91 PLVDGHGNFGSLDDDPPAAMRYTECRLNKVSEKALLADIASECVGFTETFDGSQTEPEVL 150 Query: 160 PTKIPNLLVNGSSGIAVGMATNIPPHNLTEVING 193 P ++PNLL+NGSSGIAV +ATN+ PHNL E ++G Sbjct: 151 PARVPNLLINGSSGIAVAVATNMAPHNLGEALSG 184 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 156/298 (52%), Gaps = 37/298 (12%) Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 DGMR+VIE+KR VL LY +T+L+V++ +N VAL +P +M L+D++ F++ R Sbjct: 204 DGMRVVIEIKRGHDASTVLAELYKKTRLEVNYNVNNVALVGNKPTVMPLRDMLDEFIKFR 263 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAP-TPAEAKTALVANPWQL 417 + + RRT F L KA+DR H++E A L + D ++++IR + P+ AK Sbjct: 264 VDTIERRTRFMLGKAQDRKHLVEGFAFVLTDADGVVKIIRGSKDGPSAAKK--------- 314 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + E+ G L+E Q+ AIL + L++LTGLE +KL E Sbjct: 315 -----LREKHG---------------------LSEIQSDAILAMPLRRLTGLEADKLDAE 348 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI-TANSADINLEDLITQ 536 K+L QI +L ++++V+ +E + + F +RRT + +D +ED Sbjct: 349 LKDLNGQIEYYQGLLNDKSKVIDVLIQEAQEAKTAFARERRTTLEQTGPSDGVIEDEGPP 408 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594 +D ++TLS +GYVK + + AQ RG +GK ++++ D + + H C S Sbjct: 409 KDNIITLSERGYVKRVCPTNFGAQARGTRGKRMSKLRANDELSTGDALDGHRSKFCSS 466 >UniRef50_UPI0001B4252C DNA gyrase subunit A n=1 Tax=Listeria monocytogenes FSL J1-175 RepID=UPI0001B4252C Length = 288 Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 158/252 (62%) Query: 588 DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF 647 D +L F++ G+VY K Y++PE R A+G PI+NLL +E E++ A++ ++EF + +F Sbjct: 1 DTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLF 60 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 T +G VK+T L++F ++R +G A++L + DELI V +T G +++ + G+ + F Sbjct: 61 FTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFP 120 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 E ++R MG GVRGIRL E D+V+ + V D +L T+ GYGK+T ++YP ++R Sbjct: 121 EENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRG 180 Query: 768 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 GV ++ +TE+NG +V V + +M++T +G L+R + +S GR+ GV LIR Sbjct: 181 GMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRL 240 Query: 828 AEDENVVGLQRV 839 EDE V + +V Sbjct: 241 DEDEKVATVAKV 252 >UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRS7_9BACT Length = 808 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 197/363 (54%), Gaps = 31/363 (8%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 + +++DYA VI RA+PDV DGLKPV RR+L+ + D K + K A +VG + Sbjct: 37 MTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTL--FKADDGK-FHKVANIVGACMA- 92 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELM 135 YHPHGDS++Y +V +A + ++ QGNFG+I GD+A+A RY E RL+ +A E + Sbjct: 93 YHPHGDSSIYGALVTVAN----KEYFIEKQGNFGNILTGDNASAARYIECRLSPLARETL 148 Query: 136 ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCL 195 ET +FVD+YDG K P +P K+P LL+ G+ GIAVGMAT I PHN E++ + Sbjct: 149 --FNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELLKAQI 206 Query: 196 AYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTG 255 + + I PDF I++ + Y GRGKV +RA+ ++ Sbjct: 207 KILRGQRFEIY--------PDFLCGGIMDISQ-----YDFGRGKVTVRAKIDI-----LN 248 Query: 256 RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEV 315 +T+++ ++ L+ I E K +++ I++++D + + + I I + R + Sbjct: 249 NKTLVIKQVAPGTTTESLMSSIEEAAKNGKIK-IASIQDYT-AEHVEIEINLPRGVQADW 306 Query: 316 VLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARD 375 LN LY+ TQ +VS N+ + G+PK +++ +++ + ++ + E K + Sbjct: 307 ALNALYAFTQCEVSLSPNITVIQRGRPKEIHVGEVLHHNTQTLVNILRWELLNEQNKLNE 366 Query: 376 RAH 378 + H Sbjct: 367 KYH 369 >UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia RepID=PARC_BORBU Length = 626 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/359 (33%), Positives = 197/359 (54%), Gaps = 33/359 (9%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 LK ++L Y+ VI RA+ V DG KPV RR+++++ + +D N + K A VVG+ + K Sbjct: 7 LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM-HDGN--FHKVANVVGNTM-K 62 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELM 135 YHPHGD+++Y+ +V +A + + ++ QGNFG++ GD A+A RY E RL +A +++ Sbjct: 63 YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118 Query: 136 ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCL 195 KE + +YDG P + P KIP +L+ GS GIAVGMA I PHN E++N Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVK 176 Query: 196 AYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTG 255 + + E I PDFPT I++ Y G GKV +RA+ E +D K Sbjct: 177 SELLGESYDI--------YPDFPTGGIVDVNE-----YADGNGKVLVRAKIET-IDEK-- 220 Query: 256 RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEV 315 TI++ E+P+ LI I + +++ ++ +S++ D + + + I + + R Sbjct: 221 --TIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFT-AENVAIELSLPRGVYASE 276 Query: 316 VLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKAR 374 V+ LY T Q+S +N++ L P + +KD+I H ++++ EL+K++ Sbjct: 277 VIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKME--LELQKSK 333 >UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteria RepID=D1N6B5_9BACT Length = 877 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 169/596 (28%), Positives = 271/596 (45%), Gaps = 99/596 (16%) Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79 ++L+YA VI RA+PDV DGLKPV RRVL+A+ + ++ K A VVG+ + YHP Sbjct: 55 NFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGNTM-HYHP 110 Query: 80 HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMADL 138 HG++++ D +V +A + + QGNFG+I G AAA RY E L+ + HE++ Sbjct: 111 HGNASIEDALVVLAN----KEYYITRQGNFGNILTGSPAAAGRYIECSLSPLGHEVL--F 164 Query: 139 EKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYI 198 + +FVD YDG P +P K+P+LL+ GS GIAVGMAT I PHN E++ +A + Sbjct: 165 NNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELLEAEIAVL 224 Query: 199 DDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRET 258 E+ + PDF +++ R Y G GK+ +RA+ E+ GR+ Sbjct: 225 RGEEFELY--------PDFQQGGLMDVRE-----YNDGNGKITLRAKIEI-----VGRD- 265 Query: 259 IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLN 318 +I+ EIP + L+ I + ++ +++ IS++ D + D + I + R E + Sbjct: 266 LIIREIPATTSTETLVASIEKAAEKNKIK-ISSVNDYT-TDKVEIKVVPTRGYDPEKTMQ 323 Query: 319 NLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAH 378 LY T VS +NM + +P M++ +++ E + R +L K D H Sbjct: 324 GLYMYTDCSVSISVNMTVIRENRPVQMSVSEVLRRNADKLLEYLKRELEIDLAKQEDLFH 383 Query: 379 ILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLE 438 + N I + I + E T + A L +L R Sbjct: 384 AKTLAQIFFENR--IYKKIEECKSEKEEYTEVHAG---LAPFRHLLRRD----------- 427 Query: 439 PEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRL 498 +T+Q +L L +++++ + EK E E+L ++ E+ + LGS + Sbjct: 428 -----------VTDQDIDKLLALPVRRISRFDIEKNQRELAEVLAKMEEIKKNLGSLKKY 476 Query: 499 -MEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS-----HQGYVKYQ 552 + +R+ L+ + F RRTEI + E + +E + + GYV Sbjct: 477 AINYLRKLLDKYGKDF--PRRTEIE------HFEKIDRREAALNNIKVGWDRKNGYV--- 525 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 IK +D +L N D LC G S KV LP Sbjct: 526 ----------------GTSIKSDD----ILACNEFDRFLCVEKSG---SYKVIALP 558 >UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella RepID=D1QVZ0_9BACT Length = 978 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 117/372 (31%), Positives = 200/372 (53%), Gaps = 39/372 (10%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 K+ +LDYA VI+ RA+P + DGLKPV RR+L++M + + Y K A +VG + ++ Sbjct: 119 KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMDDG---RYNKVANIVGHTM-QF 174 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++ D +V+M Q + +L+D QGN+G+I GD AAA RY E RL+K A +++ Sbjct: 175 HPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV- 229 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 +T D+ +YDG K P +P K P LL G+ GIAVG+++ + PHNL E+ + + Sbjct: 230 -FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIK 288 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 Y+ ED + PDFPT I+ + Y G+ ++ RA++E K Sbjct: 289 YLRGEDFQLY--------PDFPTGGAIDVSK-----YNDGQRGGVLKVRAKIE---KLDN 332 Query: 257 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVV 316 +T+++ EIP+ LI+ I + + + +++ D++ + I + + + Sbjct: 333 KTLVIREIPFSKTTTTLIDSILKAIDKGKIKAKRV--DDNTAAEVEIQVHLAPGVSSDKT 390 Query: 317 LNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARD- 375 ++ LY+ + +++ N + +P + + D++ RH + RT+ LRK Sbjct: 391 MDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVL----RHGVD----RTMGLLRKELQI 442 Query: 376 -RAHILEALAVA 386 R +LE L A Sbjct: 443 RRGELLEQLFFA 454 >UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bacteria RepID=C6XSV0_PEDHD Length = 977 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 116/370 (31%), Positives = 199/370 (53%), Gaps = 33/370 (8%) Query: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80 +LDYA VI+ RA+P + DGLKPV RR+++++ + + + K+A V+G+ + KYHPH Sbjct: 28 FLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMDDG---RFNKAANVIGNTM-KYHPH 83 Query: 81 GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKIAHELMADLE 139 GD+++ D +V++ Q + +L+D QGN+G I GD+AAA RY E RL+K A+E++ Sbjct: 84 GDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDNAAAPRYIEARLSKFANEVV--FN 137 Query: 140 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 +T + +YDG P +P K P LL G+ GIAVG+AT + PHN E++ Sbjct: 138 GDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIELL-------- 189 Query: 200 DEDISIEGLMEHIPG--PDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRE 257 D SIE L H P PDF T + + E R GR IR RA++ + ++ Sbjct: 190 --DASIEALQGHRPNILPDFFTGGMAD-FSAYNEGMRGGR----IRVRAKI---TEKDKK 239 Query: 258 TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVL 317 T+++ EIPY +I+ I L + + +++ + IVI++ +V + Sbjct: 240 TLVITEIPYSTTTGSVIDSI--LSANDKGKIKIKKIEDNTAAHVEIVIQLAPGISPDVTI 297 Query: 318 NNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRA 377 + LY+ T +VS N + +P+ +++ DI+ H + ++ + +L + +++ Sbjct: 298 DALYAFTSCEVSISPNTCIIKDEKPQFLSVNDILIENSMHTKALLKKELEIKLHELQEKI 357 Query: 378 HILEALAVAL 387 L + + Sbjct: 358 FFSSLLKIFI 367 >UniRef50_A8V037 DNA gyrase, A subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V037_9AQUI Length = 331 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 86/117 (73%), Positives = 95/117 (81%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 EI IEEE+KS+YLDYAMSVIVGRA+PDVRDGLKPV RR+LYAM N+ YKKS Sbjct: 3 EIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEENMYPNRPYKKS 62 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 AR VG+VI KYHPHGDS+VYD +VRMAQ F+LRY LV GQGNFGSIDGD AAMRY Sbjct: 63 ARTVGNVIAKYHPHGDSSVYDALVRMAQDFTLRYPLVQGQGNFGSIDGDPPAAMRYC 119 >UniRef50_C0X5K0 Possible DNA topoisomerase IV subunit A (Fragment) n=2 Tax=Enterococcus faecalis RepID=C0X5K0_ENTFA Length = 465 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 156/502 (31%), Positives = 239/502 (47%), Gaps = 52/502 (10%) Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R+ V+ R FEL KAR R HI+ L AL+ +D +I IR + +AK LV++ Sbjct: 1 RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSD---- 56 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 Y TE+QA+AI+ L+L +LT + L +E Sbjct: 57 ------------------------------YAFTEEQAEAIVTLQLYRLTNTDITDLQEE 86 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED--LIT 535 K L QIAELL IL + L V+++EL V++Q+G+ R T+I +I +E L+ Sbjct: 87 AKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVA 146 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 QEDVVVT++H+GY+K + Y A + G +KE DF+ NT DH+L ++ Sbjct: 147 QEDVVVTVTHEGYIKRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTN 201 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVN-LLPLEQDERITAILPVTEFEEGVKVFMATANGT 654 +G + V++LP+ G I +L L DE I A+ P E T G Sbjct: 202 KGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKTFVFITKAGM 261 Query: 655 VKKTVLTEFNRLRTAGK---VAIKL-VDGDELIGVDLTSGED--EVMLFSAEGKVVRFKE 708 +K+T + +F RT +KL D DE+ V LT+ +D +V L S G +R+ Sbjct: 262 IKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPL 321 Query: 709 SSVRAMGCNTTGVRGIRLGEGDKVVS--LIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 766 V +G GV+ + L E D VV+ L+ GD I+ TQ G KR E R Sbjct: 322 YEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGR 381 Query: 767 ATKGVISIKVTERN-GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILI 825 A +G++ ++ ++N VV + D D +++ T GT + I R + G +I Sbjct: 382 AKRGLMVLRELKKNPHRVVFMSESTDLD-LLVTTQKGTQEVIQSKNYPISERTSNGSFVI 440 Query: 826 RTAEDENVVGLQRVAEPVDEED 847 +D V+ + + V EE+ Sbjct: 441 DEQKDGQVMEVHEMHSAVIEEE 462 >UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLW5_FIBSS Length = 846 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 125/401 (31%), Positives = 204/401 (50%), Gaps = 52/401 (12%) Query: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80 +LDYA VI+ RA+P DGLKPV RR+L++M + + Y+K A +VG + YHPH Sbjct: 26 FLDYASYVILDRAVPYFEDGLKPVQRRILHSMF---ENHDGRYQKVATIVGRTMA-YHPH 81 Query: 81 GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKIAHELMADLE 139 GD+++ D +V + Q + +L+D QGN+G+ GD AAA RY E RL A +++ Sbjct: 82 GDASIGDALVGLGQ----KNLLIDTQGNWGNPYTGDRAAAPRYIEGRLTPFAVDVV--FN 135 Query: 140 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 ET +++ +YDG + P +P K P LL G GIAVG++T+I PHN E+ +A + Sbjct: 136 PETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELCEASIACLR 195 Query: 200 DEDISIEGLMEHIPGPDFPTAAII------NGRRGIEEAYRTGRGKVYIRARAEVEVDAK 253 + ++ PDF T II +G+RG GKV +RA+ E K Sbjct: 196 GKKFTLY--------PDFFTGGIIDVSDYNDGQRG---------GKVKVRAKIE-----K 233 Query: 254 TGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG 313 +T+ + EIPY LIE I + + +++ I + D + + G+ I++ ++ Sbjct: 234 VDNKTLAIREIPYGTTTVSLIESIVKANDKGKIK-IKHVDDNTSQ-GVEILVHLQPGTDP 291 Query: 314 EVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKA 373 +V ++ LY+ T + S + PK + + DI+ H +++ EL+ Sbjct: 292 QVAIDALYAFTDCEKSLSPCTCVIIDKHPKFVGVSDILKLNTEHTVKLLEWELANELKHL 351 Query: 374 RDRAHI--LEALAV---------ALANIDPIIELIRHAPTP 403 D+ H+ LE + + + + II L+R TP Sbjct: 352 EDKWHMTTLEKIFIEKEVYEVIKKAKDREQIIRLVREGLTP 392 >UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteroidetes RepID=D2QEJ6_9SPHI Length = 904 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 125/393 (31%), Positives = 211/393 (53%), Gaps = 62/393 (15%) Query: 3 DLAREITPVNIEEEL-----------KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 51 DL E P++ + E+ ++ +LDYA VI+ RA+P V DGLKPV RR+L+A Sbjct: 31 DLVPEEQPIDTKTEVLHDQTVVSGLYENYFLDYASYVILERAVPAVEDGLKPVQRRILHA 90 Query: 52 MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 111 + + + + K A V+G + ++HPHGD+++ + +V + Q + +L D QG++G Sbjct: 91 LKEMDDG---RFNKVANVIGQTM-QFHPHGDASIGEALVNIGQ----KELLFDTQGSWGD 142 Query: 112 I-DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNG 170 + GD AAA RY E+RL+K A + + + +T ++ +YDG ++ P +P K P LL G Sbjct: 143 VRTGDGAAAPRYIEVRLSKFAQDAIYN--DKTTEWQLSYDGRKREPITLPVKFPLLLAQG 200 Query: 171 SSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII------N 224 GIAVG++T I PHN E+I+ + + D+ +S+ PDF T +I + Sbjct: 201 VEGIAVGLSTKILPHNFNELIDASINILKDKPVSL--------FPDFQTGGLIDVSNYND 252 Query: 225 GRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKI---AELV 281 G RG GKV +RA+ E EVD K + + ++PY V ++LI+ I AEL Sbjct: 253 GHRG---------GKVRVRAKIE-EVDKK----ILAIRDVPYGVTTSQLIDSIVKAAELG 298 Query: 282 K---EKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH 338 K + ++A+ D + KD + I++ ++ +V ++ LY+ T +VS N + Sbjct: 299 KIRIKAPSRNVAAVVDNTAKD-VEILVHLQPGVSPDVTIDALYAFTDCEVSISPNACVII 357 Query: 339 HGQPKIMNLKDIIAAFVRH-----RREVVTRRT 366 +P +++ DI+ +RE+ RR+ Sbjct: 358 GDKPHFVSVTDILRVNTHQTVHLLQRELEIRRS 390 >UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=Deltaproteobacteria RepID=Q1NV80_9DELT Length = 711 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 177/333 (53%), Gaps = 31/333 (9%) Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79 ++LDY VI RA+PD+ DGLKPV RR+L L N + + K A VVG+ + K HP Sbjct: 65 NFLDYTSYVIRERAIPDLADGLKPVQRRIL---QTLHNMDDGRFHKVANVVGETM-KLHP 120 Query: 80 HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSID-GDSAAAMRYTEIRLAKIAHELMADL 138 HGD++++ +V +A + L+D QGNFG++ GD A+A RY E RL+ +A E M Sbjct: 121 HGDASIFSALVNLAN----KGYLIDRQGNFGNVHTGDGASAPRYIECRLSPLARETM--F 174 Query: 139 EKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYI 198 KE +F+D+YDG K P +P ++P LL+ G+ GIAVGMAT I PHN E++ + Sbjct: 175 NKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGELLTASKQIL 234 Query: 199 DDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRET 258 +E + PDFP +++ Y G G++ RAR E D +T Sbjct: 235 REEPFEL--------FPDFPQGGLLDA-----SGYEDGNGRLRCRARIETRDD-----KT 276 Query: 259 IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLN 318 I++ +IPY LIE + + + + + +S D+ + + I I++ R E + Sbjct: 277 IVIRDIPYGTTTQSLIESVEKAARAGKFKILSI--DDYTAEDVEIEIKLARGFKAEETIK 334 Query: 319 NLYSQTQLQVSFGINMVALHHGQPKIMNLKDII 351 LY+ T ++ N + P IM + +++ Sbjct: 335 ALYAFTDCEIPISPNFTVIREQTPAIMTVSEVL 367 >UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringiensis RepID=C3GSY0_BACTU Length = 745 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 126/391 (32%), Positives = 200/391 (51%), Gaps = 44/391 (11%) Query: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR------VVGDVI 74 Y+DYA V+ RAL D+RDGLKPV R LY M +K+ A+ VG + Sbjct: 52 YIDYAREVLTNRALEDIRDGLKPVQRYALYWM----------FKEKAKDMIKSEQVGAGV 101 Query: 75 GKYHPHGDSAVYDTIVRMAQPFSLRYM-LVDGQGNFGS-IDGDSAAAMRYTEIRLAKIAH 132 KYHPH + Y+++ +M + Y+ L+ G+G G S AA RYT ++ + A Sbjct: 102 LKYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 E+ ++ +D V N+D TE++P+V+P +P +L+ + GIAVG +T P +V N Sbjct: 162 EMFTAMD--GIDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGKVYIRARAEVEVD 251 YI D G + PDF T I+ + +E+ +TG+G R +V +D Sbjct: 220 LVREYIRD------GKCSTMIVPDFSTGGFISYTEKELEKLMKTGKGS--FMTRGKVFID 271 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGIS--ALRDESDKDGMRIVIEVKR 309 K I+V E+P V +EKI + +++ ++GI+ D + KDG I + Sbjct: 272 GK----NIVVTEVPQGVT----VEKIMKEIEKAEIQGITPNGYSDLTGKDGCYFEITCRA 323 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 + VL LY++T LQ F N++A+ + I + II +V+ RR+V+TR+T + Sbjct: 324 KNRVQEVLMELYTKTSLQKKFNSNLLAVESKKLVITGVWGIIDRWVKWRRKVLTRQTRLD 383 Query: 370 LRKARDRAH----ILEALAVALANIDPIIEL 396 L K + A ++ LA+ A D I+EL Sbjct: 384 LAKLVESAKYTKGFIDLLAIEGAR-DEIVEL 413 >UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria RepID=A4CLF9_9FLAO Length = 907 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/267 (38%), Positives = 154/267 (57%), Gaps = 39/267 (14%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 K +LDYA VI+ RA+P + DG KPV RR+++A+ + + Y K A VVG + +Y Sbjct: 28 KDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEMDDG---RYNKVANVVGQTM-QY 83 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++ D +V++ Q + +L+D QGN+G+I GD AAA RY E RL+K A E++ Sbjct: 84 HPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDGAAASRYIEARLSKFALEVV- 138 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 + ++ +YDG +K P +P K P LL G+ GIAVG++T I PHN E+I+ + Sbjct: 139 -FSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELIDASIK 197 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAII------NGRRGIEEAYRTGRGKVYIRARAEVEV 250 ++ + + PDFPTA II +G RG GKV +RAR Sbjct: 198 HLQGKRFKLY--------PDFPTAGIIDIGNYNDGERG---------GKVRVRARI---- 236 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKI 277 A+ + T+++ EIPY N + LI+ I Sbjct: 237 -AQQDKNTLVISEIPYGTNTSSLIDSI 262 >UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JAA3_9PORP Length = 899 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 108/364 (29%), Positives = 188/364 (51%), Gaps = 39/364 (10%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 ++ +LDYA VI+ RA+P + DGLKPV RR+LYAM + N K A++VG + + Sbjct: 53 RTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQLFENG---HLHKVAKIVGQTMA-F 108 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++ D +V++ Q + L+D QGN+G ++ GD AAA RY E +L+ +A E++ Sbjct: 109 HPHGDASINDALVQLGQ----KGFLIDTQGNWGNTLTGDEAAAGRYIEAKLSSLALEVLF 164 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 D + ++ YDGT P +P + P LL G+ GIAVG+++ I PHN E++ +A Sbjct: 165 D--SKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIYPHNPKELLEAAIA 222 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 Y+ E + PDFPT +++ + Y G ++ RA++E K Sbjct: 223 YLRGESFELY--------PDFPTGGLLD-----VDKYNDGHRGGALKCRAKIE---KIDD 266 Query: 257 ETIIVHEIPYQVNKARLIEKIAEL-----VKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 + + E+P+ LIE I + +K K ++ ++A + I I++ Sbjct: 267 RVLSITELPFGKTTTSLIESILKANEKGKIKIKHIDDMTAATAD-------IRIQLPAGV 319 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 + ++ LY+ T +V N + G P + + D++ +E++ + + L Sbjct: 320 STDKTIDGLYAFTDCEVGLSPNACVIKEGTPVFLGVSDLLKYSADRTKELLVAQLNYRLG 379 Query: 372 KARD 375 + +D Sbjct: 380 EVQD 383 >UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bacterium Ellin514 RepID=B9XEN7_9BACT Length = 701 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 114/389 (29%), Positives = 211/389 (54%), Gaps = 35/389 (8%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D+ + TP++ + + S+L+YA VI RA+P++ DGLKPV RR+L++++ + Sbjct: 52 DINKVETPLH--KRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLH---EKDDGR 106 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMR 121 + K A + G +YHPHG++A+ D +V + + RY L++GQGNFG+I GD AAA R Sbjct: 107 FIKVATISGHC-AQYHPHGEAAIGDALVVIT---NKRY-LIEGQGNFGNIYTGDPAAAPR 161 Query: 122 YTEIRLAKIA-HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 Y E RL ++A +EL D E +FV +YDG K P +P+K+P LL+ G+ GIAVGM+ Sbjct: 162 YIECRLTELARNELFND---ELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSC 218 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 I PHN E++ +A + + + PDFPT +++ R Y G+G + Sbjct: 219 KILPHNFPELLEAQIAILKKQPFKVL--------PDFPTGGLMDARE-----YADGKGSI 265 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA+ + + ++ T+++ EIP LI I + ++ +++ I ++ D + ++ Sbjct: 266 KVRAKIKAKDES-----TVVIKEIPPMTTTDSLIGSIEDASRKGKIK-IKSINDFTSEEA 319 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 I I+ + +++ LY+ T ++S ++ + + +P M + +++ + Sbjct: 320 -EIEIKAPSGVSADQLIDALYAFTDCEMSISSRIIVIRNNRPVEMTVSEVLRENTAQLVD 378 Query: 361 VVTRRTIFELRKARDRAHILEALAVALAN 389 + R + +K ++ H + + + N Sbjct: 379 TLKRELELKEKKLQEELHFKTLVRIFIEN 407 >UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Treponema RepID=Q73KU9_TREDE Length = 703 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 155/546 (28%), Positives = 274/546 (50%), Gaps = 75/546 (13%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 IE ++L+YA VI RA+PD+ DGLKPV RR+L+++ + + + K A V+G Sbjct: 4 IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMDDG---KFHKVANVIGH 60 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + KYHPHGD+++ + +V +A + + +D QGNFG+I GD A+A RY E R+ + A Sbjct: 61 CM-KYHPHGDASIGNALVVLAS----KELFIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 + + D+ +YDG K P K+P +L G+ GIAVGM+T I PHN+ E+I Sbjct: 116 KTIFYN--PHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 A++ + ++ PDFPT +I+ + E Y G GKV +RA+ + Sbjct: 174 EAEKAFLSGKSFAL--------FPDFPTGGLID----VSE-YEDGLGKVLVRAKLDT--- 217 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK--R 309 + + I++ E+P+ +I I K +V+ IS + SD G + IE+K R Sbjct: 218 --SDEKRIVIRELPFGSTTESMINSIEAASKAGKVK-ISEI---SDYTGENVEIELKLPR 271 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 V++ LY+ T+ + S N++ + P + + DII + +++ +E Sbjct: 272 GVYSADVVDALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYE 331 Query: 370 LRKARDRAHI--LEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 +R H+ LE + + I IE ++ A G + A+++ Sbjct: 332 RAMLTERLHLRTLERIFIE-ERIYKKIETMKTAE----------------GVINAVIK-- 372 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL---LDQ 484 G + E +RD +TE +L + +++++ + K +E +E+ L + Sbjct: 373 GFVPFKKEL------IRD----VTEDDVDKLLKIPIRRISLYDINKNREEVREINNRLKE 422 Query: 485 IAELLRIL-GSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 IA+LL+ L G A +++ I +L E+F KR+TEIT + +++++ +T++ + Sbjct: 423 IAKLLKNLKGYAISVLDGIAAKLPA--EEF--KRKTEITGFTK-VDVKEAVTRDTALRYD 477 Query: 544 SHQGYV 549 GY+ Sbjct: 478 EETGYL 483 >UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomatis RepID=C4PNH1_CHLTZ Length = 490 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 180/341 (52%), Gaps = 31/341 (9%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 N+ + K+ + YA VI+ RA+P V DGLKPV RR+L+ + D K +K A + G Sbjct: 3 NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTL--FRMDDGKMHK-VANIAG 59 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKI 130 + HPHGD+ + + +V +A + L++ QGNFG+ + GD AA RY E RL+ + Sbjct: 60 RTMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ + + F D+YDG E+ PD++ KIP LL++G GIAVGM T I PHN ++ Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 + +A ++D+ S+ PDFP ++ Y+ G G + +RA ++ Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPPGGTMDA-----SDYQDGLGSIVLRATIDIIN 219 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 D +T+++ EI LI I K ++ I +++D S D I I++ + Sbjct: 220 D-----KTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFS-TDLPHIEIKLPKG 272 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDII 351 + +L LY+ T+ QV A++ G+P + +I+ Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEIL 313 >UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opitutaceae RepID=B1ZME1_OPITP Length = 708 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 109/365 (29%), Positives = 184/365 (50%), Gaps = 47/365 (12%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 ++ +LDYA VI+ RA+P + DGLKPV RR+L+ M + + + K A +VG + ++ Sbjct: 71 RNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEMEDG---RFHKLANIVGATM-RF 126 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++ +V + Q R LV+ QGNFG++ GD AAA RY E RL A +++ Sbjct: 127 HPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARLTAFAKDVL- 181 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 +T + +YDG + P +P K P +L+ G+ GIAVG+AT I PHN ++ + Sbjct: 182 -FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNFNDLCRAAIN 240 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAII------NGRRGIEEAYRTGRGKVYIRARAEVEV 250 ++ + I PDFPT + +G RG GKV IRA+ E+ Sbjct: 241 HLQGKTFRIY--------PDFPTGGVADFSEYNDGERG---------GKVKIRAKIEIR- 282 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALR--DESDKDGMRIVIEVK 308 + + + E+P+ LIE I +G +R D++ D + I++ + Sbjct: 283 ----SKYLLAITELPFGSTTESLIESIL----AANAKGKIKIRHVDDNTADAVEILVHLP 334 Query: 309 RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 + + E ++ LY T Q + + +P + +++I+ V + ++ R Sbjct: 335 QGSDPEKLIQQLYVFTACQTNLSPAACVIEDDKPHFLGVREILKRSVDKTKALLKRE--L 392 Query: 369 ELRKA 373 E+R+A Sbjct: 393 EIRQA 397 >UniRef50_B1QFR9 DNA gyrase, A subunit n=2 Tax=Clostridium RepID=B1QFR9_CLOBO Length = 241 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 121/192 (63%) Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 M T NG +KKT +++++ +R G AI L + DELI V +T G DE+++ + G +RF Sbjct: 1 MCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFN 60 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 E VR MG TGV+ I L + DK VS+ V D +L+ ++NG+GKRT + EYP R Sbjct: 61 EEDVRPMGRVATGVKAITLRKTDKAVSMDVVIEDETLLSISENGFGKRTDIEEYPIHRRG 120 Query: 768 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 KGVI+ K+T++ G +VGA V + D++M++ +R VSEIS RN GV L+RT Sbjct: 121 GKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRT 180 Query: 828 AEDENVVGLQRV 839 +E+E +V + ++ Sbjct: 181 SEEEKIVAIAKI 192 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 11/196 (5%) Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 + G +K +S+Y + R+G G +A ++E+D + + + +D I+ + G Sbjct: 2 CTRNGIIKKTEISKYSSIRKG--GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRF 59 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 + R A G V + L + ++ ++ V E E + + NG K+T + E Sbjct: 60 NEEDVRPMGRVATG---VKAITLRKTDKAVSMDVVIEDE---TLLSISENGFGKRTDIEE 113 Query: 663 FNRLRTAGK--VAIKLVDGD-ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 + R GK + K+ D ++G +DE+ML ++ +R S + N Sbjct: 114 YPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAM 173 Query: 720 GVRGIRLGEGDKVVSL 735 GV+ +R E +K+V++ Sbjct: 174 GVKLMRTSEEEKIVAI 189 >UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603, partial n=1 Tax=Taeniopygia guttata RepID=UPI000194EBBC Length = 424 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/364 (29%), Positives = 192/364 (52%), Gaps = 53/364 (14%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 +S +LDYA VI+ RA+P++ DGLKPV RR+L++M +L + + K A +VG+ + ++ Sbjct: 52 QSWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKLLD---DGRFNKVANIVGNTM-QF 107 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++Y+ +V++ Q + +LV+ QGN+G ++ G AAA RY E RL++ A Sbjct: 108 HPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGRYIEARLSQFA----- 158 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 +D V N P V + + GIAVG+++ I PHN E+I+ ++ Sbjct: 159 ------LDVVYN-------PKVTEWTL------SAEGIAVGLSSKILPHNFNEIIDAAIS 199 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTG-RGKVYIRARAEVEVDAKTG 255 Y+ E ++ PDF T I+ R Y G RG V ++ RA++E K Sbjct: 200 YLRGEPFTLY--------PDFFTGGSIDVSR-----YNDGERGGV-VKIRAKIE---KID 242 Query: 256 RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEV 315 +T+ + EIPY A LIE I + + +++ I ++ D + + +++ + + Sbjct: 243 NKTLAITEIPYGKTTATLIESIVKAQEAGKIK-IRSVVDNTAQTA-NVIVYLLPGTSSDK 300 Query: 316 VLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARD 375 ++ LY+ T +VS N + +P + + D++ V R+++ + +L + R+ Sbjct: 301 TIDALYAFTDCEVSVSPNCCVISDNKPHFIGVSDVLRHNVDRTRDILGQELRIQLGEVRE 360 Query: 376 RAHI 379 + H Sbjct: 361 QLHF 364 >UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1N9_9BACT Length = 745 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/370 (30%), Positives = 187/370 (50%), Gaps = 39/370 (10%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 ++ +L+YA VI+ RA+P + DGLKPV RRVL+ + + + + K A VVG + K Sbjct: 77 RNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDMDDG---RFHKVANVVGATM-KL 132 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++ +V + Q R L++ QGN+G ++ GD+AAA RY E RL A +++ Sbjct: 133 HPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARLTPFARDVL- 187 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 +T + +YDG K P +P K P +L+ G+ GIAVG++T I PHN ++ + Sbjct: 188 -FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNFNDLCRAAIN 246 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEVEVDAKT 254 ++ + I PDFPT G G Y G GKV +RAR E + Sbjct: 247 HLQGKTFRIL--------PDFPT-----GGTGDFTDYNDGERGGKVKVRARIE-----EH 288 Query: 255 GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGE 314 + + + E+PY V LIE I + +++ I + D++ + I++ + + + Sbjct: 289 SKSVLCITELPYGVTTESLIESILAANAKGKIK-IKHV-DDNTASKVEILVHLPPGSQPD 346 Query: 315 VVLNNLYSQTQLQVSFGINMVAL------HHGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 V+ LY T QV + +P+ M ++DI+ A V +E++ + Sbjct: 347 KVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGVRDILKASVDATKELLKQELEI 406 Query: 369 ELRKARDRAH 378 +L + + H Sbjct: 407 KLGELEQQWH 416 >UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=Q252N7_CHLFF Length = 479 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 111/341 (32%), Positives = 186/341 (54%), Gaps = 31/341 (9%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ + K+ ++ YA VI+ RA+P + DGLKPV RR+L+ + + D K +K A + G Sbjct: 3 DVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRM--DDGKMHK-VANIAG 59 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKI 130 + HPHGD+ + + +V +A + L+D QGNFG+ + GD AA RY E RL+ + Sbjct: 60 RTMA-LHPHGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A +++ + + F D+YDG EK PD++P K+P LL++G GIAVGM T I PHNL E+ Sbjct: 115 AKDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYEL 172 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 I +A +++ ++ PDF + +++ Y+ G G + IRA ++ V Sbjct: 173 IEAQIAILNNRTFTLL--------PDFYSGGVMDASE-----YQDGLGSITIRASIQI-V 218 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 D+K T+I+ EI LI I K + V I +++D S D I I++ + Sbjct: 219 DSK----TLIIKEICPSTTTETLIRSIENAAK-RGVIKIDSIQDFST-DQPHIEIKLPKG 272 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDII 351 + +L L+ T+ QV A+++ +P ++ +I+ Sbjct: 273 IYAKDILEPLFQYTECQVVLTSKPTAIYNNKPVETSISEIL 313 >UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK7_9CAUD Length = 514 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 104/174 (59%), Gaps = 12/174 (6%) Query: 24 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 83 Y +V + R++PD+ DGLKPV RR+L++ + + ++KSAR+ G +G YHPHG+S Sbjct: 37 YGTTVNLDRSVPDLYDGLKPVQRRILWSASQVCRT---QFEKSARLTGHCMGAYHPHGNS 93 Query: 84 AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAD--LEKE 141 A+Y V M Q S + G+GNFGS+ D AAA RYT +RL+ + E Sbjct: 94 AIYSAAVNMVQHPSPTLL---GKGNFGSMT-DGAAAERYTNVRLSHYGQTFFDSDYINAE 149 Query: 142 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP---PHNLTEVIN 192 T FV NYD + P +P ++PN+L+NG GI VG+ T +P P ++ EV+N Sbjct: 150 TTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKLPTFTPESVLEVLN 203 >UniRef50_C9MZF3 DNA gyrase, A subunit n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MZF3_9FUSO Length = 196 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 114/186 (61%), Gaps = 7/186 (3%) Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSG--EDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 F+ ++ AGK AIKL D DE++ + LTSG EDEV + G +RF E VR+MG G Sbjct: 2 FDNIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSMGTGAAG 61 Query: 721 VRGIRLGEGDKVVSLIVPRGDGA-----ILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 V+GI L + DK+V + + ILT T+ GYGKRT ++EY SR KG+I+ K Sbjct: 62 VKGITLRDKDKIVGAAIINSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAK 121 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 + ++ G +V V + D+IM+IT GTL+RT V+ +S++GR+ GV +++ +E + Sbjct: 122 LNDKTGKIVDVKIVTENDEIMLITSEGTLIRTSVNNVSVIGRSASGVRIMKVRNNEKIAS 181 Query: 836 LQRVAE 841 + ++ E Sbjct: 182 VVKITE 187 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%) Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE--DFIDRLLVANTHDHILCFSSRG 597 ++T++ +GY K LSEY RGGKG A++ ++ +D +V +D I+ +S G Sbjct: 90 ILTITEEGYGKRTKLSEYRLTSRGGKGIINAKLNDKTGKIVDVKIVTE-NDEIMLITSEG 148 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE 639 + V + R A G V ++ + +E+I +++ +TE Sbjct: 149 TLIRTSVNNVSVIGRSASG---VRIMKVRNNEKIASVVKITE 187 >UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n=6 Tax=Leptospira RepID=Q04PE8_LEPBJ Length = 462 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/358 (26%), Positives = 174/358 (48%), Gaps = 30/358 (8%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 E+++ Y+ V RA+P DGLKPV RR+L+AM +D Y K+ +V G Sbjct: 18 FEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAM--WNSDARNRYTKTVKVAGL 75 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSL--RYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAK 129 +G YHPHGD ++ D + +MAQ F+ LV G+G FG + D + A+ RYTE++L+ Sbjct: 76 AMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASPRYTEVKLSD 134 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 +L +D+V NYD TE P K+P +L+N GIA G IP H L + Sbjct: 135 FVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRCFIPGHRLAD 194 Query: 190 VINGCLAYIDDED-ISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV 248 ++ + Y+ + +S++ P NG + E T G + + Sbjct: 195 IVKSQINYLKTKKPLSLK-----------PWYKDFNGEVKMAE---TETGNITMSTTFAF 240 Query: 249 EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK 308 + + + + + + P N+ ++I + +++ E++ + D S + RI ++ K Sbjct: 241 KWEG----DILYLTDSPMNWNREKVISLLDDIL-ERKDSWLKEYVDYSSQ-TFRIELQYK 294 Query: 309 R-DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 + + + + L+++ +Q + +N++ + G+ K ++II F R+ + RR Sbjct: 295 KGEKPSQKEIMALFNKEDIQ-TLAMNVIT-YDGKLKNFKPEEIIKRFCDFRKTHLIRR 350 >UniRef50_Q4EDX9 DNA topoisomerase IV, A subunit n=2 Tax=Listeria monocytogenes RepID=Q4EDX9_LISMO Length = 334 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 17/313 (5%) Query: 528 INLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED---FIDRLLVA 584 I+ E L+ EDV+V+++ +GYVK Y A G A +KE D FI ++ Sbjct: 10 IDTEVLVANEDVIVSVTKEGYVKRTSQRSYAA----SNGAELA-MKEADHAIFIQKM--- 61 Query: 585 NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEG 643 N+ D +L F+S+G V++LP+ G + +L L E I + + + F E Sbjct: 62 NSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEE 121 Query: 644 VKVFMATANGTVKKTVLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGK 702 + T NG K++ +T + R + +AIKL DEL+ V L G +++ L + G Sbjct: 122 KRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGY 181 Query: 703 VVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAVAE 760 +R+ + + G T GV+ I L + D V+ IV P IL ATQ G K+ +E Sbjct: 182 GLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASE 241 Query: 761 YPTKSRATKGVISIKVTERN-GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 819 + SRA +G++ ++ + N +G D+ D + + T+ +V V+ + I R + Sbjct: 242 FEPISRAKRGLLMLRELKSNPHRFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYS 301 Query: 820 QG-VILIRTAEDE 831 G +L T E E Sbjct: 302 NGSFVLDETMEGE 314 >UniRef50_B1PL26 Topoisomerase IV (Fragment) n=184 Tax=cellular organisms RepID=B1PL26_ECOLX Length = 88 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 54/88 (61%), Positives = 67/88 (76%), Gaps = 1/88 (1%) Query: 50 YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 109 YAM+ LG + + +KKSAR VGDV+GKYHPHGD A Y+ +V MAQPFS RY LVDGQGN+ Sbjct: 1 YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNW 60 Query: 110 GSIDG-DSAAAMRYTEIRLAKIAHELMA 136 G+ D S AAMRYTE RL+K + L++ Sbjct: 61 GAPDDPKSFAAMRYTESRLSKYSELLLS 88 >UniRef50_Q56C44 Gp52 DNA topoisomerase subunit n=1 Tax=Enterobacteria phage RB43 RepID=Q56C44_9CAUD Length = 387 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 106/385 (27%), Positives = 181/385 (47%), Gaps = 61/385 (15%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV-IGKYHPH 80 L +A+ I RA+P + DG KPVHR +++ G+ ++K A + G V I YH H Sbjct: 14 LTFALYTIYSRAIPHLVDGFKPVHRFFVHSAAKGGS----GFQKVASIAGGVAIYGYH-H 68 Query: 81 GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 140 G+++V + + MA + L D G FGS A RY +L+ + + D Sbjct: 69 GETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIYCKLSPLFKAIYMD--- 125 Query: 141 ETVDFVDNYDGTEKIPDV--MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYI 198 D ++ E +P +P IP +LVNG GIA G ATNIPPH+ V+NGC++Y+ Sbjct: 126 --EDLTIPHEDPEHLPPAYYLPI-IPMVLVNGFRGIAKGYATNIPPHDPVSVLNGCVSYL 182 Query: 199 DDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRET 258 + +D +++ + P F I++G T GK ++ G+ Sbjct: 183 NGKDFTLD-----LKYPQF-KGDIVDG---------TMYGKYELQ-----------GKTK 216 Query: 259 IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLN 318 +++ EIP + ++ + I I + ++EK I + +D S +D R I +KR+ + Sbjct: 217 LVITEIPVKYDRVKYI-AILDKLEEKGC--IVSYKDLSKED-FRYEITLKREYANGLTHE 272 Query: 319 NLYSQTQLQVSFGINMVALHHGQ------PKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 + L + N+ + +G+ P+ + LKD + R T+++ R Sbjct: 273 KILKDFGLIENSNPNINVIFNGKLHSYERPETL-LKDFVD----------IRMTVYQQRI 321 Query: 373 ARDRAHILEALAVALANIDPIIELI 397 + EALA ALA ++ I ++I Sbjct: 322 EKRIQEAKEALARALAKVEFIDQMI 346 >UniRef50_UPI0001854D31 DNA gyrase subunit A n=1 Tax=Helicobacter pylori HPKX_438_CA4C1 RepID=UPI0001854D31 Length = 220 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 108/184 (58%), Gaps = 4/184 (2%) Query: 650 TANGTVKKTVLTEFNRLRT-AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE-GKVVRFK 707 T NG VK+T L+EF R+ +G AI L +GDEL+ + + +L ++ G ++F Sbjct: 11 TKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFP 70 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYPTKSR 766 VR MG N GV GI+L + D VV +V DG +L+ ++NG GK+T Y +SR Sbjct: 71 LEDVREMGRNARGVIGIKLNKNDFVVGAVVISDDGNKLLSVSENGLGKQTLAEAYRGQSR 130 Query: 767 ATKGVISIKVTERNGLVVGAVQVDDCD-QIMMITDAGTLVRTRVSEISIVGRNTQGVILI 825 KG+I +++T++ G +V + VDD + +M++T + ++R + +I GRN GV LI Sbjct: 131 GGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLI 190 Query: 826 RTAE 829 TA+ Sbjct: 191 NTAD 194 >UniRef50_P07065 DNA topoisomerase medium subunit n=8 Tax=T4-like viruses RepID=TOP5_BPT4 Length = 442 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 169/380 (44%), Gaps = 51/380 (13%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 L YAM + RA+P++ DG KPV R V+ L + K A + G V + HG Sbjct: 17 LAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADLGYHHG 76 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 141 +++ D MA ++ + L+DGQGNFGS AAA RY R++K + + D E Sbjct: 77 ENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFYNVYKDTEYA 136 Query: 142 TVDFVDNYDGTEKIPDV--MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 V + E IP +P IP +L+NG SGIA G AT I PH+++ V L + Sbjct: 137 PV-----HQDKEHIPPAFYLPI-IPTVLLNGVSGIATGYATYILPHSVSSVKKAVLQALQ 190 Query: 200 DEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRET 258 + ++ + P+F + I+G+ I Y+ T R Sbjct: 191 GKKVT----KPKVEFPEFRGEVVEIDGQYEIRGTYKF------------------TSRTQ 228 Query: 259 IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLN 318 + + EIPY+ ++ + KI + ++ K G D + G ++ +++ + N Sbjct: 229 MHITEIPYKYDRETYVSKILDPLENK---GFITWDDACGEHGFGFKVKFRKEY--SLSDN 283 Query: 319 NLYSQTQLQVSFGI------NMVALHH-GQPKIM-NLKDIIAAFVRHRREVVTRR----- 365 ++ FG+ N+ ++ G+ ++ N+ D+I FV R+ V +R Sbjct: 284 EEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRIDNKI 343 Query: 366 --TIFELRKARDRAHILEAL 383 T R A +AH ++ + Sbjct: 344 KETESAFRLAFAKAHFIKKV 363 >UniRef50_C4MZZ9 Gp52 topoisomerase II, medium subunit n=2 Tax=unclassified T4-like viruses RepID=C4MZZ9_9CAUD Length = 459 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 92/366 (25%), Positives = 166/366 (45%), Gaps = 37/366 (10%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 TP +++ + + L YAM + RA+P++ DG KPV R V+ + + + K A Sbjct: 20 FTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLA 79 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 + G V + HG+ + + MA ++ + L+DGQGNFGS AAA RY R+ Sbjct: 80 SIAGGVADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIFARI 139 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++ D E V + D K P IP +L+NG SGIA G ATNI PH+ Sbjct: 140 GTNFAKVYKDTEYAPV----HADVEHKPPAFYLPIIPTVLLNGISGIATGYATNILPHSF 195 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 V L + ++ ++ + P+F + IE RG +R + Sbjct: 196 DSVKKAVLQVLQEKRVT----KPKVAYPEFRGDVV-----EIEPGSYELRGTYKFTSRTQ 246 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 + + EIPY+ ++ + K+ + +++K G D+ D++G +++ Sbjct: 247 MHIT-----------EIPYKYDRETYVAKVLDPLEDK---GYITYDDDCDENGFGFKVKI 292 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGI------NMVALHH-GQPKIM-NLKDIIAAFVRHRR 359 +++ E+ ++ FG+ N+ ++ G+ K+ ++ ++I FV R+ Sbjct: 293 RKEY--ELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVRK 350 Query: 360 EVVTRR 365 V +R Sbjct: 351 TFVQKR 356 >UniRef50_Q76Y98 Gp52 topoisomerase II medium subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Y98_9CAUD Length = 438 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 164/345 (47%), Gaps = 31/345 (8%) Query: 23 DYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY-HPHG 81 ++AM I RALP + DGLKPV R +L++ VL N + +KK+A V G VI +Y + HG Sbjct: 18 EFAMYTIEERALPSMVDGLKPVQRYILFS--VLKNA-GREFKKNAAVAG-VISEYGYNHG 73 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 141 + A D MA ++ + ++ G+GNFG AA RY I +K HE + K+ Sbjct: 74 EMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARY--IFCSK--HERFESMFKD 129 Query: 142 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 201 ++ +P +P +L+NG SGIA G AT I PH++ V C+ E Sbjct: 130 MELLEESTADGSILPRYYLPILPTVLLNGVSGIATGFATKIMPHSVQSVAK-CV-----E 183 Query: 202 DISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAK-TGRETII 260 + G + P FP IE ++ + VE D + +G+ +I Sbjct: 184 QVLKSGKCDE-PEIQFPK--FFGKILSIEGETQSWK----------VEGDYELSGKTKLI 230 Query: 261 VHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNL 320 ++E+P + ++ + + + +LV+ ++ G + + + ++ ++ D E ++ + Sbjct: 231 INELPPKYDRLKYVTHLNKLVETDKIVGYDESKMKDREFCFKVTLKRDFDVSHENII-KV 289 Query: 321 YSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 + +Q VS I ++ + N D+I FV R V+ +R Sbjct: 290 FKLSQ-NVSQYIRVIDQNGNLKPYDNASDLIVDFVNFRFNVLQKR 333 >UniRef50_P72065 Mxe gyrA intein (Fragment) n=1 Tax=Mycobacterium xenopi RepID=GYRA_MYCXE Length = 327 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/106 (47%), Positives = 67/106 (63%), Gaps = 15/106 (14%) Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 119 ++++ KSAR V + +G YHPHGD+++YDT+VRMAQP+S+RY LVDGQGNFGS D AA Sbjct: 3 DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQGNFGSPGNDPPAA 62 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPN 165 MRY L+A E E+V +I D++P PN Sbjct: 63 MRY-----CITGDALVALPEGESV----------RIADIVPGARPN 93 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 38/64 (59%), Positives = 50/64 (78%) Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE L +A E++ ++++ETVDF+ NYDG + P V+P++ PNLL NGS GIAVGMATNI Sbjct: 264 TEAPLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 323 Query: 183 PPHN 186 PPHN Sbjct: 324 PPHN 327 >UniRef50_B5IGD1 DNA gyrase C-terminal domain, beta-propeller n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IGD1_9EURY Length = 153 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 2/148 (1%) Query: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILT 746 +T G +++ LF+ GK +RF E VR MG GV GI+L +GD+V+S V + Sbjct: 3 ITHGGEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIGIKLQDGDEVISSAVESEGPYVFA 62 Query: 747 ATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVR 806 +GYGKRT + EY R GV +I + RN VV ++ + D+ +++T G +R Sbjct: 63 VLSSGYGKRTPIGEYRRIRRGGMGVRNISI--RNATVVKSLLTTENDEALLLTKNGMSIR 120 Query: 807 TRVSEISIVGRNTQGVILIRTAEDENVV 834 ++ ++S++GRN +GV LI+ + + VV Sbjct: 121 IKLRDVSVMGRNARGVKLIKLDDGDEVV 148 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%) Query: 586 TH--DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG 643 TH + I F+ G+ + R ARG ++ + + DE I++ + EG Sbjct: 4 THGGEDIFLFTKYGKAIRFSEDDVRVMGRTARG--VIGIKLQDGDEVISSAVE----SEG 57 Query: 644 VKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-VDGDELIGVDLTSGEDEVMLFSAEGK 702 VF ++G K+T + E+ R+R G + + ++ LT+ DE +L + G Sbjct: 58 PYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNATVVKSLLTTENDEALLLTKNGM 117 Query: 703 VVRFKESSVRAMGCNTTGVRGIRLGEGDKVVS 734 +R K V MG N GV+ I+L +GD+VV+ Sbjct: 118 SIRIKLRDVSVMGRNARGVKLIKLDDGDEVVN 149 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 170/382 (44%), Gaps = 49/382 (12%) Query: 31 GRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIV 90 RA+P V DGLKP R+VLYA G + A V + YH HG+ +++ TIV Sbjct: 1028 ARAIPSVVDGLKPGQRKVLYASFKRGLTQEMKVAQLAGYVAEHTA-YH-HGEESLHGTIV 1085 Query: 91 RMAQPF----SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 144 MAQ F +L +L GQ FG+ G AA+ RY +LA + + DL+ ++ Sbjct: 1086 NMAQDFVGANNLPLLLPSGQ--FGTRLQGGKDAASARYIFTKLAPLTRTIFPDLDDPVLN 1143 Query: 145 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDIS 204 +++ DG P+ IP +LVNGS G+ +G T+IP +N T +I+ L + +E Sbjct: 1144 YLEG-DGDRIQPEFFAPIIPMVLVNGSEGLGMGWRTSIPMYNPTNLIDNLLRLLHNE--- 1199 Query: 205 IEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETII-VHE 263 P P G +G E K Y V T +E I + E Sbjct: 1200 ----------PMEPLTPWYKGFKGSVELTPPFTFKTY-------GVIEPTKKEHIFKISE 1242 Query: 264 IPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV---IEVKRDAVGEVVLNN- 319 +P + E + VK ++ G L+D S+ + + V + R A + + N Sbjct: 1243 LPVRKWTNDYKELLTTYVKPEK--GKPTLKDFSEYNTDQKVDFEVTFPRGAEAKPIPQNA 1300 Query: 320 --LYSQTQLQVSFGINMVAL-HHGQPK-IMNLKDIIAAFVRHRREVVTRRTIFELRKARD 375 L +L+ +F + MV HG K M+ DII F R E +R + AR+ Sbjct: 1301 QDLLKLLRLESTFFMKMVLFDRHGAIKEYMDPLDIIRDFFEVRMEYYAKR-----KAARE 1355 Query: 376 RAHILEALAVALANIDPIIELI 397 + +LE A L + ++L+ Sbjct: 1356 K--VLENEAKRLGDKLKFVKLV 1375 >UniRef50_Q6WHM1 Topoisomerase II small subunit n=1 Tax=Vibrio phage KVP40 RepID=Q6WHM1_BPKV4 Length = 428 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 103/370 (27%), Positives = 173/370 (46%), Gaps = 46/370 (12%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 L+YAM I RAL + DGLKPV R VLY NV+ D + ++ K A + V + HG Sbjct: 14 LEYAMYTIENRALANGIDGLKPVQRFVLY--NVI-KDASTSFDKVAALGSSVSKIGYNHG 70 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 141 +++ D + MA + +V G+GNFGS +A+ RY +L H+ DL + Sbjct: 71 ETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAKL----HDNF-DLYFK 125 Query: 142 TVDFVDNYDGTEKIPDVMPTKI-PNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD 200 + + E +P + P +L+NG GIA G A NI PH+ V L Y+ Sbjct: 126 DIHLSPEHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPEWVKKAVLEYLAG 185 Query: 201 EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETII 260 ++IS P FP G+ IE+ ++ VE+ T + Sbjct: 186 KEIS-------EPVVKFPE---FYGK--IEKLEHNKYAQI-----GTVEISGLTA----V 224 Query: 261 VHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA--VGEVVLN 318 V EIP + A+ I ++ +LV++ + IS+ DE+ + + + KR A E V+ Sbjct: 225 VTEIPTGFDHAKYIIELDKLVEKGK---ISSYVDETS-ETFQFRVRFKRGAKMTEESVIK 280 Query: 319 NLYSQTQLQVSF--GINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDR 376 L +LQ +F IN++ ++ ++++++ FV R + +R ++ + +R Sbjct: 281 TL----KLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKR----IQDSTER 332 Query: 377 AHILEALAVA 386 +LA+A Sbjct: 333 TEKRASLAIA 342 >UniRef50_Q6U961 Topoisomerase II medium subunit n=3 Tax=unclassified T4-like viruses RepID=Q6U961_9CAUD Length = 555 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 163/371 (43%), Gaps = 45/371 (12%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 L++AM + RA+P + DGLKPV R +Y + K A + G V + HG Sbjct: 124 LEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKVAALAGGVSEAGYHHG 183 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 141 + + +A ++ +++G GNFGS AAA RY R+ + ++ D+E Sbjct: 184 EGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFCRVHQNFWDIYRDIELA 243 Query: 142 TVDFVDNYDGTEKIPD--VMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 V + E +P +P IP +L NG GIA G ATNI PH+ +I A I+ Sbjct: 244 PV-----HPEPEHLPPRYYLPV-IPMVLANGVKGIATGYATNIFPHSYKSLIKCTKAAIE 297 Query: 200 DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETI 259 + I + P+F + +I R + + E+ +G+ + Sbjct: 298 GKPIP----RLEVQFPEF--SGVIR---------RVSAKTIEVEGLYEL-----SGQTKL 337 Query: 260 IVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR-DAVGEVVLN 318 + E+P + ++ + + +L + ++ E K+G R + +KR D GE + N Sbjct: 338 TITELPVKFDRLSYVILLDKLKDQGKIVSYK----EQHKNGFRFDVTLKRQDKFGEQLQN 393 Query: 319 NLYSQTQLQVS-FGINMVALH-----HGQPKIMNL---KDIIAAFVRHRREVVTRRTIFE 369 N + + + FG+ V + + K+ +D+I FV HRR+ R +E Sbjct: 394 NPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVIRDFVEHRRKFTAERVEYE 453 Query: 370 LRK---ARDRA 377 +K ARD A Sbjct: 454 RQKSEHARDLA 464 >UniRef50_UPI000038387A COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038387A Length = 363 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 45/259 (17%) Query: 270 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVL-NNLYSQTQLQV 328 KARLIEK+A+L++EK++ ++ +RDES +D +R+V+E + +V V+L +L+ ++L+ Sbjct: 3 KARLIEKLADLLQEKKLPLLADVRDESAED-VRVVLEPRSRSVDPVMLMESLFRLSELEA 61 Query: 329 SFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVAL 387 +N+ L G P+++ L + + +V HRR V+ RR+ + L + R IL L + Sbjct: 62 RVPLNLNVLVGGVVPRVIGLAEALREWVDHRRVVLQRRSTYRLGQIERRLEILGGLLIVY 121 Query: 388 ANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGL 447 ++D +I +IR P K AL+A Sbjct: 122 LDLDEVIRIIREEDEP---KAALMAR---------------------------------- 144 Query: 448 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 507 + LT+ QA AILD RL+ L LE +L E+ EL + + +LGS I +++ Sbjct: 145 FELTDVQANAILDTRLRSLRKLEEMELKREFDELTKEKQGIEELLGSEKLQWADITKQIR 204 Query: 508 LVREQFGD-----KRRTEI 521 V++ FG KRRT + Sbjct: 205 AVKKTFGPETKLGKRRTTL 223 >UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YYJ6_BRAFL Length = 1181 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 147/321 (45%), Gaps = 39/321 (12%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDTI 89 R++P + DGLKP R+VL+ + ND K K A++ G V + YH HG++++ TI Sbjct: 173 RSIPSLVDGLKPGQRKVLFTC-LKRND--KREVKVAQLAGSVAEMSAYH-HGETSLMGTI 228 Query: 90 VRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 + +AQ F S L+ G FG+ G AA+ RY L+ +A +L ++ +++ Sbjct: 229 INLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIFTMLSTLARKLFNTFDEPMLNY 288 Query: 146 VDNYDGTEKI-PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDIS 204 YD +KI P+ IP +LVNG+ GI G +T +P +++ E+IN L ID +D Sbjct: 289 --QYDDNQKIEPEWYIPLIPMVLVNGAEGIGTGWSTKVPNYDVREIINNMLRMIDGKD-- 344 Query: 205 IEGLMEHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHE 263 P P P+ G +EE G+V I TI + E Sbjct: 345 --------PLPMNPSYKNFKGDIEELEENRFVANGEVAI-----------LDNNTIEITE 385 Query: 264 IPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNL 320 +P + E + E++ EK I+ ++ +R V+ + + + + L Sbjct: 386 LPIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTDTTVRFVVSMTEEQLMKAEAAGL 445 Query: 321 YSQTQLQVSFG-INMVALHHG 340 + +LQ + NMV H Sbjct: 446 HKVFKLQSNIASTNMVLFDHN 466 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 16/206 (7%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVYDTI 89 R++P++ DG KP R+VLY N N+ K A++VG + YH HG+S++ TI Sbjct: 737 RSIPNIMDGWKPGQRKVLYGC-FKRNLRNEC--KVAQLVGYIAEHSAYHHHGESSLQQTI 793 Query: 90 VRMAQPF--SLRYMLVDGQGNFGSID--GDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 + MAQ F S ++ G FGS G A+A RY +LA + + + + + Sbjct: 794 INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKY 853 Query: 146 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISI 205 + N +G + P IP +LVNG GI G ++ IP +N ++I+ YI+ Sbjct: 854 L-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYINK----- 907 Query: 206 EGLMEHIPG-PDFPTAAIINGRRGIE 230 E L+ +P DF NG+ G E Sbjct: 908 EPLIPMVPWYKDFKGRIESNGKTGYE 933 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 107/391 (27%), Positives = 180/391 (46%), Gaps = 47/391 (12%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM--NVLGNDWN 60 +L E+ + I + + + ++MS V R++P + DGLKP R++LY L N+ Sbjct: 741 NLDPEMNEIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKLKNEIK 799 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDS 116 A + A V DV YH HG+ ++ TI+ MAQ F S L+ G FGS G Sbjct: 800 VA--QLAAYVADV-SSYH-HGEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRATGGKD 855 Query: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176 AAA RY L +I + + + ++++ + + T + +P +P +LVNG+ GI Sbjct: 856 AAAARYIFTELNEITRTIFNEADDPLLNYLQDDESTVEPQWYLPV-LPMILVNGADGIGT 914 Query: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTG 236 G +TNIP +N +++ ++ LM P + G G E + G Sbjct: 915 GWSTNIPSYNPLDIV-----------ANLRRLMRGEPMEEM--NPWYKGWYGDIE--KVG 959 Query: 237 RGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK-IAELVKEKRVEGISALRDE 295 K I R E ++D TI + E+P + + E +A L EK V+ I + +E Sbjct: 960 PQKFKISGRIE-QIDD----NTIEISEVPVKTWTNTVKEFLLAGLGNEKTVQWIKDM-EE 1013 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH-HGQ-PKIMNLKDIIA 352 +R V+++ + + + L + +L + + NMVA HG+ K +++ DI+ Sbjct: 1014 QHTTSIRFVVKLSDAEMAKALSVGLLEKFKLVSTISLANMVAFDPHGRIKKYLDVLDIVK 1073 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEAL 383 F R E +R + H+LE L Sbjct: 1074 DFYFVRLEYYEKR----------KNHMLEIL 1094 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 19/178 (10%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIG------KYHPHGDSAV 85 R++P DGLKP R+VLYA K KS V + G YH HG++++ Sbjct: 708 RSIPSAIDGLKPSQRKVLYACF-------KRKLKSEIKVAQLTGYCAEHTAYH-HGEASL 759 Query: 86 YDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKE 141 TI+ MAQ F S L+ G FG+ + G AA+ RY LA IA L + + Sbjct: 760 QSTIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYIYTYLAPIARSLFPEADDT 819 Query: 142 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 + ++++ DG + P+ IP L+VNG GI G +T IPPH+ +V+ LA +D Sbjct: 820 LLSYLED-DGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPPHSANDVLEYILAKLD 876 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 97/380 (25%), Positives = 168/380 (44%), Gaps = 53/380 (13%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV---GDVIGK--YHPHGDSAVY 86 R++P V DGLKP R+V++A + + K +VV G V K YH HG+ ++ Sbjct: 752 RSIPSVLDGLKPGQRKVMFAC------FKRNLTKDQKVVELAGYVSEKAAYH-HGEMSLQ 804 Query: 87 DTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKET 142 TI+ +AQ F S ++ GNFGS G AA+ RY RL+ A ++ + L++ Sbjct: 805 QTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASPRYIHTRLSPFARKIFSVLDEPN 864 Query: 143 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC---LAYID 199 ++ V DG P V IP +L NG+ GI G +T+IP ++ E++ + +D Sbjct: 865 LE-VQMEDGKPIEPKVYAPIIPMVLCNGADGIGTGWSTSIPNYHPMEIVRAIKRRMGRLD 923 Query: 200 DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETI 259 +D + +P G +G E R K E D KTG I Sbjct: 924 SDDTEGKPFETMMP--------WFRGWKGTPEPAEKDRYKF----NGIYETDDKTGE--I 969 Query: 260 IVHEIPYQVNKARLIEKIAELVK-EKRVEGISALRDESDKDGMRIVIEVKRDAVGEV--- 315 I+ E+P ++ K+ E++ K I ++ +D + VI++ ++ Sbjct: 970 IIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDYKEFNDHKNVNFVIQLDEKHYKDIHKT 1029 Query: 316 ---VLNNLYSQTQLQVSFGINMVALHHGQ--PKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 +++ Q+ S N+VA K ++DI+ F +R ++ + R L Sbjct: 1030 HEGIMDRFKLNKQVATS---NLVAFDSTGRIRKYEKVEDILEEFYVYRLDMYSARKKHWL 1086 Query: 371 -------RKARDRAHILEAL 383 RK +++A ++ + Sbjct: 1087 GVYHSDYRKLKNQARFIQEI 1106 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 19/211 (9%) Query: 31 GRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDT 88 RA+P DGLKP R++L+AM L ++A K A++ G + + +H HG++++ +T Sbjct: 682 ARAIPHCVDGLKPSQRKILWAM--LKRHSSEA-AKVAQLSGYISEVSSFH-HGEASLQET 737 Query: 89 IVRMAQPFS--LRYMLVDGQGNFGSID--GDSAAAMRYTEIRLAKIAHELMADLEKETVD 144 IV+MAQ F+ L+ +G FGS G+ AA RY +L++ A L + + +D Sbjct: 738 IVKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEDDDPLLD 797 Query: 145 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDIS 204 ++D +GT P+ +P LL NG+ GI G ATNIP + +V A I+ E S Sbjct: 798 YIDE-EGTMVEPNHYVPILPLLLCNGAVGIGFGFATNIPSFHPLDVSAAVRAMINGE--S 854 Query: 205 IEGLMEHIPGPDFPTAAIING--RRGIEEAY 233 + ++ ++ P A G RRG E+ Y Sbjct: 855 AKQVVRNL----VPWAVGFQGTVRRGPEKEY 881 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 95/347 (27%), Positives = 162/347 (46%), Gaps = 41/347 (11%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK-KSARVVGDVIGK--YHPHGDSAVYDT 88 R++P V DG KP R+VL+ + N Y+ K + V K YH HG+ ++ T Sbjct: 689 RSIPSVLDGFKPGQRKVLFCCFKI----NLTYEIKVGTLAAKVSEKTSYH-HGEESLQQT 743 Query: 89 IVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 144 IV +AQ F + L+ G+FGS G AAA RY +L K+A + + + Sbjct: 744 IVGLAQNFVGTNNIYLLKPAGSFGSRATGGKDAAAARYIHTQLNKVARSIFHPSDDALFN 803 Query: 145 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDIS 204 ++++ DG+ P+ IP +LVNG+ GI G +TNIP N ++I ++DE Sbjct: 804 YLED-DGSPIEPEWYLPIIPMVLVNGAEGIGTGWSTNIPSFNPLDIIKNIRHLMNDE--- 859 Query: 205 IEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEI 264 +M+ + +P G +G+ E R ++Y +VE + G + + E+ Sbjct: 860 ---VMDEM----YP---WYRGWKGVVEKVDDHRFRLY----GKVE---QVGPNVLEITEV 902 Query: 265 PYQVNKARLIEKIAELV--KEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYS 322 P + + + E + + EK I + ++ D +R +I + + + + +Y Sbjct: 903 PARTWTSSIKEYLLLGLSGNEKTKPWIKDMEEQHTND-IRFIITLTPEEMAKTKKIGVYD 961 Query: 323 QTQL--QVSFGINMVALH-HGQ-PKIMNLKDIIAAFVRHRREVVTRR 365 + +L QV+ NMVA HG+ K + DI+ F R E +R Sbjct: 962 RFKLVSQVNLK-NMVAFDAHGKIRKYDTVLDILTEFYYVRLEFYQKR 1007 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 23/185 (12%) Query: 32 RALPDVRDGLKPVHRRVLYAM---NVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVY 86 R++P V DGLKP R+VLYA N++G NK K R+ G+V + YH HG+ ++ Sbjct: 666 RSIPSVFDGLKPSQRKVLYACFSSNIIGK--NKK-KHVDRLTGEVASVAGYH-HGEKSLT 721 Query: 87 DTIVRMAQPF-----SLRYMLVDGQGNFGSI--DGDSAAAMRYTEIRLAKIAHELMADLE 139 +TI+ MAQ F ++R L++ G+FG+ G +A RY + KIA + + Sbjct: 722 ETIIGMAQDFVGCGNNVR--LLNPDGSFGTRLRGGKDHSASRYLSSFVEKIARVVFPPED 779 Query: 140 KETVD--FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAY 197 + + F DN + E I + +P IP ++VNG+ GI G +T IPPHN EV + + Sbjct: 780 DDLYEKVFEDN-EYNEPI-NYIPI-IPLIVVNGACGIGTGHSTEIPPHNPLEVCHWIRCW 836 Query: 198 IDDED 202 +++++ Sbjct: 837 LEEQE 841 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 158/362 (43%), Gaps = 59/362 (16%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDTI 89 R++P + DG KP R+VL+A + N K K A++ G V + YH HG++++ TI Sbjct: 795 RSIPQLVDGWKPGQRKVLFAC-IKKN--MKHELKVAQLAGYVSEVSAYH-HGEASLQQTI 850 Query: 90 VRMAQPF--SLRYMLVDGQGNFGSID--GDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 V MAQ F S ++ G FGS G A+A RY RLA + + + +++ Sbjct: 851 VTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYIFTRLAFYTRLVFHEADDPILEY 910 Query: 146 VDNYDGTEKI-PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDIS 204 Y+ ++I P + IP +L+NGS GI G ++ +P +N +VI YID E++ Sbjct: 911 --EYEEGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGEEM- 967 Query: 205 IEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETI----I 260 + + YR RG++ A A TG ETI Sbjct: 968 ----------------------QRMTPWYRGFRGRIEENA-------AGTGFETIGLVRR 998 Query: 261 VHEIPYQVNK---ARLIEKIAELVK------EKRVEGISALRDESDKDGMRIVIEVKRDA 311 E Y++ + R + E ++ EKR I+ RD S + + ++V + Sbjct: 999 CGEDSYEITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFTVKVGEER 1058 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALH--HGQ-PKIMNLKDIIAAFVRHRREVVTRRTIF 368 V L +L+ S I + L HG+ + N +II F R E RR + Sbjct: 1059 VERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEIIKEFAPIRLEFYHRRKAY 1118 Query: 369 EL 370 L Sbjct: 1119 CL 1120 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 49/351 (13%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK--YHPHGDSAVYDTI 89 R++P + DG KP R +LY G + K +++ G V YH HG++++ I Sbjct: 834 RSIPSMIDGFKPSQRMILYCCFKRGRHSKEV--KVSQLAGYVSENTDYH-HGEASLQGAI 890 Query: 90 VRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 + MAQ F S ++ GNFG G A+ RY L IA+ + + + E + + Sbjct: 891 IGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYIFTELHPIANYIFREEDDEILKY 950 Query: 146 VDNYDGTEKI-PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDIS 204 NYD K+ PDV IP ++NGS GI G + N+PPHN +V+ I+++D Sbjct: 951 --NYDDDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNVPPHNPLDVVANLKRLINEKD-- 1006 Query: 205 IEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEI 264 ++ +P NG +G E K IR + ++ + I + +I Sbjct: 1007 ---PVDMLPW--------YNGFKGTIEKNPKATNKYIIRGKYCIDGNK------IHIEDI 1049 Query: 265 PYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQT 324 P + +E + ++ + DG + ++ + VG L+ + T Sbjct: 1050 P---------------IVNGWIEPYESKMEQKEDDGQELQ-KLYKTGVGN--LDKFLNMT 1091 Query: 325 QLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARD 375 Q +NM K ++ D++ F +R E+ +R F K ++ Sbjct: 1092 QSLSVTNLNMFNSKGKMTKYNSISDVLYEFYEYRLEMYQKRKEFFFLKLQN 1142 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 94/181 (51%), Gaps = 23/181 (12%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK---KSARVVGDVI--GKYHPHGDSAVY 86 R+LP+V DGLKP R+VLYA + + K K A++ G YH HG+++++ Sbjct: 716 RSLPNVVDGLKPSQRKVLYAC------FKRNLKDEIKVAQLAGYCAEHTAYH-HGEASLH 768 Query: 87 DTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKET 142 TI+ MAQ F S L+ G FG+ + G+ AA+ RY L+ ++ L + Sbjct: 769 STIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDAASPRYIFTHLSPLSRLLFPVDD--- 825 Query: 143 VDFVDNY---DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 D + NY DG P+ IP LLVNG GI G +T IP HN +V+N A +D Sbjct: 826 -DMLLNYKEEDGQMIEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQHNPLDVLNYIRAKLD 884 Query: 200 D 200 + Sbjct: 885 E 885 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 41/364 (11%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVYDTI 89 R++P + DGLKP R++L+A L D K K A++ G V YH HG+ ++Y TI Sbjct: 688 RSIPSIVDGLKPSQRKILFA--CLKRDL-KDEIKVAQLAGYVSEHSAYH-HGEQSLYGTI 743 Query: 90 VRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 MAQ F + L+ G FG+ GD AA+ RY RL K+ + + + +D+ Sbjct: 744 TSMAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYIYTRLNKLTRLIFLKEDDQILDY 803 Query: 146 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISI 205 + DG P IP LLVNG+ G+ G +T+IP N ++ ID +I + Sbjct: 804 QEE-DGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIPSFNPIDL-------IDSLNILL 855 Query: 206 EGLMEHIPGPDFPTAAII-NGRRGIEEAYRTG----RGKVYIRARAE-VEVDAKTGRETI 259 + E+I P+ + G +G E +G +G +++R + +E D Sbjct: 856 DSNAENIGNVKLPSLDMWARGFKGKIEMNDSGKFISKGIFKMKSRGDSIEFD-------- 907 Query: 260 IVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNN 319 + E+P + LVK+ ++ R+ + G I I D E L Sbjct: 908 -ISELPIGEWTENYKSHLQSLVKKGLIKSKITERNTENSVGFTIAIN-DPDEFSESQLKK 965 Query: 320 LYSQTQLQVSFGINMVALHHGQPKIM---NLKDIIAAFVRHRREVVTRRTIFELRKARDR 376 L +L+ SF ++ + + I+ N+ DII F R +R +++ + Sbjct: 966 L----KLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYLVRLSYYHQRKSHLMKQLEKQ 1021 Query: 377 AHIL 380 IL Sbjct: 1022 IRIL 1025 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 163/353 (46%), Gaps = 31/353 (8%) Query: 32 RALPDVRDGLKPVHRRVLYAM---NVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVY 86 R++P + DGLKP R+VL+ N++ + +K + G V YH HG+ ++ Sbjct: 812 RSIPSMVDGLKPGQRKVLFGCFKQNLIHD------QKVVELAGYVSKEAAYH-HGEQSLQ 864 Query: 87 DTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKET 142 TIV +AQ F S ++ GNFGS G AA+ RY RL+ +A ++ L++ Sbjct: 865 QTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIHTRLSPLARKIFHPLDEPN 924 Query: 143 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDED 202 ++F + DG P V +P +LVNG+ GI G +T+IP ++ +++ + D Sbjct: 925 LEFQFD-DGKLIEPKVYAPILPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRM-GRD 982 Query: 203 ISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVH 262 S +G + P P G +G E G + VEV+ + E + V Sbjct: 983 SSGDGEEK----PFEPMTPWFRGWKGTPEP----DGPNKFKFNGIVEVNPQNPNE-VDVT 1033 Query: 263 EIPYQVNKARLIEKIAELVK-EKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLY 321 E+P ++ K+ E+++ +K I ++ +D + +I ++ + + + L Sbjct: 1034 ELPIRMWTDDFKSKLEEIIRGDKGPSWIKDYKEYNDHQTVHFIIALEEKQMSSALRDGLI 1093 Query: 322 SQTQLQVSFG-INMVALH-HGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 + +L + N+VA G+ K N ++I+ + +R + R L+ Sbjct: 1094 EKFKLTKTVATTNLVAFDTRGKIYKYENPQEIMEEYYHYRLNLYGERKKHWLK 1146 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 47/371 (12%) Query: 32 RALPDVRDGLKPVHRRVLYAM---NVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVY 86 R++P V DG KP R+VL+ N+ +A K A++ G V YH HG++++ Sbjct: 761 RSIPSVMDGFKPSQRKVLFCCFKRNL------RAELKVAQLAGYVSEHSAYH-HGEASLQ 813 Query: 87 DTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKET 142 IV MAQ F S L+ G FG+ + G AA+ RY L ++ + L+ + Sbjct: 814 GCIVNMAQDFVGSNNIHLLSPIGQFGTRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDC 873 Query: 143 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDED 202 + ++ DG P+ IP +LVNGS GI G ++++P +N ++I G I+ E+ Sbjct: 874 LKYLSE-DGQSIEPEWYIPIIPMVLVNGSDGIGTGWSSSVPNYNPLDIIKGLRQMINGEE 932 Query: 203 ISIEGLMEHIPGPDFPTAAIINGRRG--IEEAYRTG--RGKVYIRARAEVEVDAKTGRET 258 I+ P G G +E+A G G ++ EV D+ T Sbjct: 933 IA-------------PLTPWYRGFTGHIVEKANSRGTDTGNYIVQGLYEVTDDS-----T 974 Query: 259 IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVL- 317 ++V E+P + + + L+ I ++ + I ++ A+ +V Sbjct: 975 LVVSELPVKSWTQTYKQFLEGLLD---AGTIKDFKENHTDVKVLFTITMEPKALSDVTKA 1031 Query: 318 -NNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVRHRREVVTRRTIFELRKA 373 + + +L+ S + + L K N K+I+A F R E RR L+K Sbjct: 1032 PGGIVKKFKLESSLSTSNMHLFDAAGHIKKYENPKEIMAEFYGIRLEYYGRRKKAMLQKL 1091 Query: 374 RDRAHILEALA 384 +D+ +L A Sbjct: 1092 QDQIKLLSNKA 1102 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 91/387 (23%), Positives = 162/387 (41%), Gaps = 39/387 (10%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D +I +NI + + +++ R+LP + DGLK R+V++ + WN Sbjct: 683 DSPNKILQLNISTFINEELIKFSIED-CKRSLPHLIDGLKESQRKVIFGLK----QWNGK 737 Query: 63 YKKSARVVGDVIGKY--HPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDS 116 +G + + + HG+ ++DTI++MAQ F + L++ G FG+ G Sbjct: 738 NNIKVAQLGAFVAQKTDYKHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLSGGKD 797 Query: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176 AA+ RY + I +++ + +++ DG P IP + +NGS G+ Sbjct: 798 AASPRYIFVNQPPILNKIFRPEDDPILNYT--LDGE---PVFYAPVIPLICINGSVGVGT 852 Query: 177 GMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTG 236 G + NIP N +E+I+G +I+ + + + ++ P G G E +G Sbjct: 853 GFSCNIPMFNPSEIIDGLKQWINMREQGEKYVFKYKPW--------YKGFTGKIEKNGSG 904 Query: 237 RGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 R YI + G V E+P + +K E+ + R S L Sbjct: 905 R---YISYGTLSNEASNNGMYQYTVSELPINM----WTDKFKEMCDQYRE---SNLIKTC 954 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQ-PKIMNLKDIIAAF 354 D + K + E+ + NL ++ + S NMV H G+ K L I+ F Sbjct: 955 DNYSEVTTVNFKISSEHELTIENLKLRSYIHTS---NMVMFDHEGKIHKYETLNGIMQRF 1011 Query: 355 VRHRREVVTRRTIFELRKARDRAHILE 381 + R ++ +R + L+K I E Sbjct: 1012 CKERIKIYEKRRQYMLQKLNKSLTISE 1038 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 46/350 (13%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDTI 89 R++P + DGLKP R+VL+ ND K K A++ G V + YH HG+ ++ TI Sbjct: 713 RSIPSMVDGLKPGQRKVLFTC-FKRND--KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768 Query: 90 VRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 + +AQ F S L+ G FG+ G +A+ RY L+ +A L + T+ F Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLKF 828 Query: 146 VDNYDGTEKI-PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDIS 204 + YD +++ P+ IP +L+NG+ GI G + IP ++ E++N +D E+ Sbjct: 829 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE-- 884 Query: 205 IEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEI 264 P P P+ G IEE Y+ + EV + T TI + E+ Sbjct: 885 --------PLPMLPSYKNFKG--TIEELAPNQ----YVIS-GEVAILNST---TIEISEL 926 Query: 265 PYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLY 321 P + E++ E + EK I+ R+ ++ V+++ + + E L+ Sbjct: 927 PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986 Query: 322 SQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 +LQ S N + L D + ++ + R FELR Sbjct: 987 KVFKLQTSLTCNSMVLF----------DHVGCLKKYDTVLDILRDFFELR 1026 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 152/344 (44%), Gaps = 47/344 (13%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDTI 89 R++P + DG KP R+VL+ ND K K A++ G V + YH HG+ A+ TI Sbjct: 734 RSIPSLVDGFKPGQRKVLFTC-FKRND--KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 789 Query: 90 VRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 V +AQ F S L+ G FG+ G AA+ RY L+ +A L ++ + F Sbjct: 790 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 849 Query: 146 VDNYDGTEKI-PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDIS 204 + YD +++ P+ IP +L+NG+ GI G A +P ++ E++N +D D Sbjct: 850 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD-- 905 Query: 205 IEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAK---TGRETIIV 261 P P P Y+ +G + + + V + R T+ + Sbjct: 906 --------PHPMLPN-------------YKNFKGTIQELGQNQYAVSGEIFVVDRNTVEI 944 Query: 262 HEIPY----QVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVL 317 E+P QV K +++E + +K IS ++ ++ V+++ + + + Sbjct: 945 TELPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEA 1003 Query: 318 NNLYSQTQLQVSFGINMVAL--HHGQ-PKIMNLKDIIAAFVRHR 358 L+ +LQ + N + L H G K ++DI+ F R Sbjct: 1004 AGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLR 1047 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/350 (24%), Positives = 153/350 (43%), Gaps = 38/350 (10%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV---GDVIGKY-HPHGDSAVYD 87 R++P V DGLKP R+VLY + + KK +VV G V G + HG+ ++ Sbjct: 741 RSIPSVVDGLKPGQRKVLYTC------FRRNLKKDMKVVELAGHVSGTTAYQHGEGSLQQ 794 Query: 88 TIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETV 143 TIV +AQ F S ++ GNFGS G A+ RY RL A + + + + Sbjct: 795 TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASARYIYTRLWPFARRVFHNHDDPLL 854 Query: 144 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 203 + ++ DG + +V +P +L+NG+ GI G +++ P +N +++ +D E Sbjct: 855 TYNED-DGAKIEQEVYVPVVPMILINGADGIGTGWSSSTPNYNPEDIVENLKRMMDGE-- 911 Query: 204 SIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHE 263 P P G G E G+ + + +TG + + + E Sbjct: 912 -----------PLKPMQPWFRGFTG--EVTAVGQDRFKFSG-----IIKETGDKEVEITE 953 Query: 264 IPYQVNKARLIEKIAELVK-EKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYS 322 +P + +K+ +++K EK I +D + + VI++ + + L Sbjct: 954 LPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHMKTAIAEGLEE 1013 Query: 323 QTQLQVSF-GINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 + +L + N+VA + K +++DI+ F R + RR ++L Sbjct: 1014 KFKLSKTMTTTNLVAFDPERITKYASVEDIMKEFYAVRLKYYERRKQYQL 1063 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDTI 89 R++P + DGLKP R+VL+ + ND K K A++ G V + YH HG+ A+ TI Sbjct: 848 RSIPSLVDGLKPGQRKVLFTC-LKRND--KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 903 Query: 90 VRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 V +AQ F S ++ G FG+ G AA+ RY L+ +A L ++ + F Sbjct: 904 VNLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPAVDSNLLKF 963 Query: 146 VDNYDGTEKI-PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 + YD +K+ P+ IP +LVNG+ GI G A IP +++ E++N Sbjct: 964 L--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDVREIVN 1009 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 112/205 (54%), Gaps = 21/205 (10%) Query: 6 REIT-PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA--MNVLGNDWNKA 62 +EIT P I +EL + Y+ + + R++P + DGLKP R++L+A L N+ Sbjct: 786 KEITYPDFINKEL----IHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNE---- 836 Query: 63 YKKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDS 116 K +++ G V + YH HG+ ++ TIV+MA F S L+ G FG+ G Sbjct: 837 -IKVSQLSGYVAEQTSYH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSD 894 Query: 117 AAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 176 +A+ RY +L +A L +L+ +++++ +G PD IP LLVNGS GI V Sbjct: 895 SASARYIFTKLEPVARYLFNELDDPLLNYLEE-EGESIQPDYYIPIIPMLLVNGSEGIGV 953 Query: 177 GMATNIPPHNLTEVINGCLAYIDDE 201 GM+T+IP + ++I+ + ++++ Sbjct: 954 GMSTSIPLFSPIDIIDQLMLRLNNQ 978 >UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q8HFR9_9EUGL Length = 1247 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 10/166 (6%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDTI 89 RALP DGLKP R++L++ GN N++ K S ++ G + + +H HG+ ++ TI Sbjct: 693 RALPSAVDGLKPSQRKILWSCFRRGNA-NESLKVS-QLSGYISEVSAFH-HGEMSLQQTI 749 Query: 90 VRMAQPF--SLRYMLVDGQGNFGSID--GDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 ++MAQ + S L++ +G FGS G AA RY +L+ +A + + E + F Sbjct: 750 IKMAQDYVGSNNINLLEPEGQFGSRQHLGSDHAAARYIFTKLSPLARLIFPKEDDELLQF 809 Query: 146 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 V++ +G P IP LLVNGS GI G A + H+ +V+ Sbjct: 810 VED-EGKYVEPRFYVPIIPMLLVNGSVGIGFGFACTVQMHHPLDVV 854 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 17/169 (10%) Query: 32 RALPDVRDGLKPVHRRVLYAM--NVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVYD 87 R++P++ DGLKP R+VL+A L N+ K A++ G V YH HG+S++ Sbjct: 830 RSIPNLLDGLKPGQRKVLFATFKKKLNNEL-----KVAQLAGYVAEHSAYH-HGESSLQS 883 Query: 88 TIVRMAQPF--SLRYMLVDGQGNFGSID--GDSAAAMRYTEIRLAKIAHELMADLEKETV 143 TIV MAQ F S L++ G FGS G A+A RY +L+K + + + + Sbjct: 884 TIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLSKWTRYIFPEADDPLL 943 Query: 144 DFVDNYDGTEKI-PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 ++ YD ++I P IP +LVNG+ GI G ++++P +N ++I Sbjct: 944 TYL--YDDGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPKDII 990 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 25/200 (12%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV--GDVIGK---YHPHGDSAVY 86 R++P + DGLKP R+VL+A + + K+ +VV G I + YH HGD ++ Sbjct: 673 RSIPSLMDGLKPGQRKVLFAC------FKRNLKQEIKVVQLGGYIAEHSAYH-HGDLSLV 725 Query: 87 DTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKET 142 TI+ MAQ F S L+ +G FGS + G A+ RY L KI + + + Sbjct: 726 STIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYISTALNKITRYIFPEQDDHL 785 Query: 143 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDED 202 + + ++ DG P+ IP LVNG+ GI G +T+I +N E++N +D + Sbjct: 786 LKYQED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPIELVNQIKNRLDGQP 844 Query: 203 I--------SIEGLMEHIPG 214 + +G++E++P Sbjct: 845 FQPMTPFYRNFDGIIENLPN 864 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 23/184 (12%) Query: 32 RALPDVRDGLKPVHRRVLYAM---NVLGNDWNKAYKKSARVVGDVIGK--YHPHGDSAVY 86 R++P V DGLKP R+VL+ N++ K +++ G V K YH HG+ ++ Sbjct: 674 RSIPSVVDGLKPSQRKVLWTCLEKNIMKE------LKVSQLSGLVSEKSSYH-HGEVSLQ 726 Query: 87 DTIVRMAQPF----SLRYMLVDGQGNFGSI--DGDSAAAMRYTEIRLAKIAHELMADLEK 140 TIV MAQ F ++ ++L GQ FGS G AA RY RL+ I+ L + Sbjct: 727 ATIVNMAQNFCGSNNVNWLLPSGQ--FGSRLGGGKDQAAARYIYTRLSSISRYLCPKDDD 784 Query: 141 ETVDFVDNYDGTEKI-PDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 + ++++ D +I P IP +LVNG+ GI G +T + +N ++++ C Y++ Sbjct: 785 QILEYL--VDEDRRIEPKYYCPIIPTVLVNGADGIGTGWSTAVSNYNPLDLVDNCRRYLN 842 Query: 200 DEDI 203 E+ Sbjct: 843 GEEF 846 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 17/181 (9%) Query: 32 RALPDVRDGLKPVHRRVLYAM---NVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVY 86 R++P V DG KP R+VL+ N++G K A++ G V YH HG++++ Sbjct: 680 RSIPSVVDGWKPGQRKVLFGCLKRNLVGE------CKVAQLTGYVAEHSAYH-HGEASLQ 732 Query: 87 DTIVRMAQPF--SLRYMLVDGQGNFGSID--GDSAAAMRYTEIRLAKIAHELMADLEKET 142 TI+ MAQ F S +++ G FGS G A+A RY +L I + + + Sbjct: 733 QTIINMAQNFVGSNNINVLEPCGQFGSRKEGGKDASAARYIFTKLNPITRLIFVEEDDNI 792 Query: 143 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDED 202 +++ N +G P IP +LVNGS GI G ++ IP +N ++I+ Y+++ D Sbjct: 793 LEY-QNEEGQTIEPMYYIPTIPMVLVNGSEGIGTGFSSQIPNYNPLDIIDNLKRYLNNVD 851 Query: 203 I 203 + Sbjct: 852 M 852 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 88/348 (25%), Positives = 151/348 (43%), Gaps = 43/348 (12%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV------VGDVIGKYHPHGDSAV 85 R++P+V DG KP R+VLY + K K +V V + YH HG+ ++ Sbjct: 690 RSIPNVLDGFKPGQRKVLYGC------FKKNLKSELKVAQLAPYVSECTA-YH-HGEQSL 741 Query: 86 YDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKE 141 TI+ +AQ F S L+ G FG+ G AAA RY L K+ ++ + Sbjct: 742 AQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDP 801 Query: 142 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 201 ++ + T + +P +P +LVNG+ GI G +T IPP N E+I ++DE Sbjct: 802 LYKYIQEDEKTVEPEWYLPI-LPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDE 860 Query: 202 DISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIV 261 + +E + P F G G E R ++Y R + G + + Sbjct: 861 E------LEQM-HPWF------RGWTGTIEEIEPLRYRMYGRIE-------QIGDNVLEI 900 Query: 262 HEIPYQVNKARLIEK-IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNL 320 E+P + + + E + L +++ +E D ++ +I + + + + Sbjct: 901 TELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGF 960 Query: 321 YSQTQLQVSFGI-NMVALH-HGQPKIMN-LKDIIAAFVRHRREVVTRR 365 Y + +L + NMVA HG+ K N + +I++ F R E +R Sbjct: 961 YERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKR 1008 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 167/369 (45%), Gaps = 52/369 (14%) Query: 31 GRALPDVRDGLKPVHRRVLYAM--NVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVY 86 R++P + DGLKP R++L+A L N+ K A++ G V YH HG+ ++ Sbjct: 671 ARSIPSLCDGLKPGQRKILFACFKRNLKNEI-----KVAQLSGYVAEHSAYH-HGEQSLE 724 Query: 87 DTIVRMAQPF----SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEK 140 TIV MAQ F ++ Y++ GQ FGS + G AA+ RY L KI + + + Sbjct: 725 STIVGMAQSFVGTNNINYLMPIGQ--FGSRNMGGKEAASARYIHTCLNKITRCVFPEPDD 782 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD 200 + ++++ +G + P IP L+NG+ GI G +T+IP +N E+++ Sbjct: 783 HILYYLED-EGQQVEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVD-------- 833 Query: 201 EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAK---TGRE 257 SIE M +P D + Y+ G++ ++++ V K Sbjct: 834 ---SIEKRMMGVPFTD------------LLPWYKGFTGEISNNEKSQITVSGKYHLVNET 878 Query: 258 TIIVHEIP---YQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGE 314 TI + E+P + + +E+ E K+K E I +++ + + V+++ + + Sbjct: 879 TIEITELPIKKWIRDYKNFLEEKLESTKDKDPE-IEDIKEYHAGNRVHFVVKMSEKQMEK 937 Query: 315 VVLNNLYSQTQLQVSF-GINMVALHH-GQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 V + +LQ + NMV +H G+ + N+ +I+ F R RR + + Sbjct: 938 VQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICEIMEEFYEVRLNAYKRRKEYLVS 997 Query: 372 KARDRAHIL 380 K IL Sbjct: 998 KIERDLEIL 1006 >UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV Length = 1263 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 40/247 (16%) Query: 30 VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIG------KYHPHGDS 83 V R++P++ DG KP HR+V Y G+ YK+ + V D+ G KYH HGD Sbjct: 733 VLRSVPNLMDGFKPSHRKVFY-----GSVEKNIYKQEIK-VSDLTGFVSNMTKYH-HGDQ 785 Query: 84 AVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLE 139 ++ TIV MAQ + S L+ G FGS G +A+ RY +L +A ++ D + Sbjct: 786 SLSSTIVGMAQNYVGSNNLNLLMPLGMFGSRLTGGKDSASPRYLNTKLDDLAKKIFIDYD 845 Query: 140 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 + + + D P IP +LVNG+ GI G +T I P N ++I + Sbjct: 846 FDILQH-QSEDNCRIEPVYYAPIIPMILVNGAEGIGTGYSTKIYPCNPRDIIANIKRLLT 904 Query: 200 DED-ISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRET 258 +E+ +++ H+ G T I+G + I +RA+ E+ G++T Sbjct: 905 NENPKTMKPWFRHLTG----TIEKIDGAKYI--------------SRAKYEI---IGKDT 943 Query: 259 IIVHEIP 265 I + ++P Sbjct: 944 IHITDLP 950 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 37/243 (15%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS---ARVVGDVI--GKYHPHGDSAVY 86 R++P + DGLKP R+V++ + + KK A++VG + YH HG++++ Sbjct: 777 RSIPSIADGLKPGQRKVIWGC------FKRKLKKEIKVAQLVGYISEHAAYH-HGEASLA 829 Query: 87 DTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKET 142 TI+ +AQ + S L+ G +G+ I G AA RY I + + Sbjct: 830 ATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAAPRYIFTNAKSITRAIYHPFDDPL 889 Query: 143 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDED 202 ++++ + D + MPT +P +L+NG+ GI G +TNIPP+N +++ + +E+ Sbjct: 890 LNYLKDDDVPIEPEWYMPT-VPMVLINGAEGIGTGWSTNIPPYNPVDIVANLRRMMKEEE 948 Query: 203 ISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVH 262 P P P G E TG+GK + V V K T+ + Sbjct: 949 ----------PEPMTPWWRGFKG-----EVRPTGKGKYDV-----VGVATKINDTTVEIS 988 Query: 263 EIP 265 E+P Sbjct: 989 ELP 991 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 19/178 (10%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS---ARVVGDVI--GKYHPHGDSAVY 86 R++P++ DGLK HR+ LY+ + + KK A+++G V YH HG++++Y Sbjct: 769 RSIPNIVDGLKTSHRKTLYSC------FKRNLKKEIKVAQLIGYVSEHSAYH-HGEASLY 821 Query: 87 DTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELM-ADLEKE 141 TIV MAQ F S L++ G++G+ G ++ RY RL IA + AD + Sbjct: 822 STIVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSARYIHTRLNDIARAVYHADDDPI 881 Query: 142 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID 199 VD DG + P IP +LVNG GI G ++ IP +N ++I ID Sbjct: 882 LSCVVD--DGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAID 937 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 12/166 (7%) Query: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVYDTI 89 R++P DGLKP R++++ L N + YK S+ + G V +YH HG+ ++ T+ Sbjct: 365 RSIPSSIDGLKPTQRKIIH---TLLNHSKQEYKVSS-LSGLVTTYAQYH-HGEQSLQQTV 419 Query: 90 VRMAQPFS----LRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 V MAQ F+ + +L GQ S+ G AA RY +L+ + +L + + T+++ Sbjct: 420 VAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYISTKLSSLTTKLFNEDDLHTLNY 479 Query: 146 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 +D +G P +P +L+NG+ GI G +T +P N E+ Sbjct: 480 LDE-EGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVPNFNPREIC 524 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYR... 1159 0.0 UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYR... 1109 0.0 UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multac... 1047 0.0 UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A... 1045 0.0 UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms... 1042 0.0 UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepI... 1037 0.0 UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8C... 1036 0.0 UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organism... 1035 0.0 UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria Rep... 1034 0.0 UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GY... 1027 0.0 UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms... 1024 0.0 UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0L... 1023 0.0 UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria Rep... 1022 0.0 UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH... 1020 0.0 UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GY... 1018 0.0 UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8... 1017 0.0 UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organism... 1011 0.0 UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYR... 1009 0.0 UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber... 1007 0.0 UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio ... 1002 0.0 UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V... 1002 0.0 UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostri... 1000 0.0 UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachl... 997 0.0 UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GY... 995 0.0 UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms... 991 0.0 UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2R... 989 0.0 UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6... 985 0.0 UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYR... 982 0.0 UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X... 981 0.0 UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincenti... 980 0.0 UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacteriu... 972 0.0 UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepI... 972 0.0 UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepI... 967 0.0 UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphapr... 965 0.0 UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacter... 965 0.0 UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ... 963 0.0 UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae R... 960 0.0 UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadens... 958 0.0 UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales ... 957 0.0 UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA... 957 0.0 UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6... 952 0.0 UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYR... 950 0.0 UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneo... 948 0.0 UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia Re... 946 0.0 UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum fer... 945 0.0 UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=... 945 0.0 UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia Re... 945 0.0 UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9R... 943 0.0 UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthro... 942 0.0 UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagiba... 938 0.0 UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C... 937 0.0 UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0... 936 0.0 UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio p... 932 0.0 UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GY... 932 0.0 UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6B... 929 0.0 UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succino... 928 0.0 UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepI... 927 0.0 UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter pis... 926 0.0 UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondria... 922 0.0 UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus mo... 919 0.0 UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepI... 915 0.0 UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytopla... 910 0.0 UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C... 908 0.0 UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon... 906 0.0 UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium fer... 901 0.0 UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 T... 898 0.0 UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicut... 896 0.0 UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obsc... 892 0.0 UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneum... 888 0.0 UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus... 887 0.0 UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=G... 886 0.0 UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorfe... 880 0.0 UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium... 880 0.0 UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix ore... 879 0.0 UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5... 878 0.0 UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5R... 876 0.0 UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 876 0.0 UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae ... 872 0.0 UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chr... 871 0.0 UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae Rep... 866 0.0 UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio s... 866 0.0 UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cy... 864 0.0 UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepI... 858 0.0 UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A ... 846 0.0 UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 842 0.0 UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium ex... 841 0.0 UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobact... 841 0.0 UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyan... 835 0.0 UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q... 826 0.0 UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibaci... 824 0.0 UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria ... 821 0.0 UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales R... 815 0.0 UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicut... 812 0.0 UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms Rep... 803 0.0 UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarin... 801 0.0 UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipel... 799 0.0 UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter ... 797 0.0 UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 792 0.0 UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipel... 791 0.0 UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID... 790 0.0 UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q... 789 0.0 UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae R... 779 0.0 UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholepl... 778 0.0 UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=... 772 0.0 UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain pr... 771 0.0 UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales... 769 0.0 UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. ... 768 0.0 UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcu... 765 0.0 UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetoco... 761 0.0 UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firm... 756 0.0 UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myx... 755 0.0 UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinoba... 752 0.0 UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms Rep... 749 0.0 UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicut... 742 0.0 UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=... 741 0.0 UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma Re... 740 0.0 UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family pr... 739 0.0 UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rho... 739 0.0 UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pu... 735 0.0 UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Acti... 734 0.0 UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula balt... 727 0.0 UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=... 723 0.0 UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae R... 721 0.0 UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcac... 721 0.0 UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma ar... 719 0.0 UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphapr... 719 0.0 UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphapr... 718 0.0 UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z... 716 0.0 UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis... 715 0.0 UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=unculture... 713 0.0 UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n... 713 0.0 UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Pla... 712 0.0 UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma homi... 710 0.0 UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mo... 710 0.0 UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundi... 701 0.0 UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID... 700 0.0 UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaprot... 693 0.0 UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Trophe... 692 0.0 UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsi... 689 0.0 UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma co... 688 0.0 UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaprot... 685 0.0 UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma sy... 685 0.0 UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria R... 685 0.0 UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteoba... 683 0.0 UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobia... 677 0.0 UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hy... 676 0.0 UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteoba... 675 0.0 UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaprot... 674 0.0 UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria... 671 0.0 UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma... 671 0.0 UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacteri... 667 0.0 UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphapro... 663 0.0 UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Vari... 657 0.0 UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria... 657 0.0 UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=P... 653 0.0 UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaprote... 642 0.0 UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 634 e-180 UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostri... 627 e-178 UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacteri... 626 e-178 UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammapro... 624 e-177 UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria... 622 e-176 UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H... 616 e-175 UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial,... 591 e-167 UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clos... 584 e-165 UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms ... 581 e-164 UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular ... 579 e-163 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 544 e-153 UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=... 513 e-143 UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=M... 500 e-139 UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria... 473 e-131 UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodiu... 462 e-128 UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodiu... 440 e-121 UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from dire... 422 e-116 UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate di... 421 e-116 UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 416 e-114 UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibr... 395 e-108 UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bact... 383 e-104 UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria... 379 e-103 UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Tr... 379 e-103 UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opit... 378 e-103 UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentispha... 378 e-103 UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella... 374 e-102 UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_... 371 e-101 UniRef50_C0X5K0 Possible DNA topoisomerase IV subunit A (Fragmen... 367 1e-99 UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacter... 366 2e-99 UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JA... 364 1e-98 UniRef50_C3X0L8 DNA gyrase subunit A (Fragment) n=1 Tax=Fusobact... 353 1e-95 UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bac... 353 2e-95 UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia ... 353 2e-95 UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 352 5e-95 UniRef50_A4ECR3 Putative uncharacterized protein n=1 Tax=Collins... 349 2e-94 UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chth... 349 3e-94 UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=D... 346 2e-93 UniRef50_Q5CB96 ATP-dependent Clp protease, ATPase subunit n=1 T... 345 4e-93 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 341 1e-91 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 339 2e-91 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 335 4e-90 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 334 1e-89 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 331 6e-89 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 329 2e-88 UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringien... 329 4e-88 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 328 5e-88 UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomat... 328 9e-88 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 327 1e-87 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 324 8e-87 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 322 3e-86 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 322 4e-86 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 321 1e-85 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 320 1e-85 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 315 5e-84 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 313 2e-83 UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=... 312 4e-83 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 312 5e-83 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 311 9e-83 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 311 1e-82 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 309 3e-82 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 307 9e-82 UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase... 307 2e-81 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 306 2e-81 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 306 3e-81 UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchi... 305 4e-81 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 302 3e-80 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 301 8e-80 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 300 2e-79 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 299 2e-79 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 299 3e-79 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 297 2e-78 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 297 2e-78 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 296 3e-78 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 296 4e-78 UniRef50_Q56C44 Gp52 DNA topoisomerase subunit n=1 Tax=Enterobac... 292 3e-77 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 291 7e-77 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 288 7e-76 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 286 2e-75 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 286 3e-75 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 285 6e-75 UniRef50_UPI0001B4252C DNA gyrase subunit A n=1 Tax=Listeria mon... 285 7e-75 UniRef50_Q6U961 Topoisomerase II medium subunit n=3 Tax=unclassi... 283 2e-74 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 282 3e-74 UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n... 282 3e-74 UniRef50_C4MZZ9 Gp52 topoisomerase II, medium subunit n=2 Tax=un... 281 8e-74 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 280 2e-73 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 279 2e-73 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 279 4e-73 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 278 8e-73 UniRef50_P07065 DNA topoisomerase medium subunit n=8 Tax=T4-like... 277 1e-72 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 277 2e-72 UniRef50_A2I985 DNA gyrase subunit A (Fragment) n=5 Tax=Campylob... 276 4e-72 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 273 2e-71 UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 272 4e-71 Sequences not found previously or not previously below threshold: >UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYRA_ERWCA Length = 878 Score = 1159 bits (2999), Expect = 0.0, Method: Composition-based stats. Identities = 740/857 (86%), Positives = 795/857 (92%), Gaps = 1/857 (0%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM+VLGNDWN Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVGDVIGKYHPHGDSAVY+TIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIR++KIAHEL+ADLEKETVDFV NYDGTE+IPDVMPT+IPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNLTEV+NGCLAYIDDE+IS+EGLMEHI GPDFPTAAIINGRRGIEEAYRTGRGK+ Sbjct: 181 NIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRARAEVE DAKTGRETIIVHEIPYQVNKARLIEKIAELVK+KR+EGISALRDESDKDG Sbjct: 241 YIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+KRDAVGEVVLNNLYSQTQLQ SFGINMVALH GQPKIM LKDI+ AFVRHRRE Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRRE 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVTRRTIFELRKARDRAHILE LA+ALANIDPIIELIR A +PAEAK +L+A W+LG+V Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSV 420 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 A MLERAGDDAARPEWLEPEFG+RDG YYLTEQQAQAILDLRLQKLTG+EHEKLLDEYKE Sbjct: 421 ATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKE 480 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 LL +IAELL IL S +RLMEVIREELE + Q+ D+RRTEITAN+ADIN+EDLI QEDVV Sbjct: 481 LLAEIAELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLINQEDVV 540 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLSHQGYVKYQPLS+YEAQRRGGKGKSAARIKEEDFIDRLLVANTHD ILCFSSRGR+Y Sbjct: 541 VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 600 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 MKVYQLPEA+RGARGRPIVNLLPLE DERITAILPV E+EEG +FMATA+GTVKKT L Sbjct: 601 WMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGTVKKTAL 660 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 TEF+R +G +A+ L +GDELIGVDLT G DE MLFSAEGKVVRF E +VR+MG TG Sbjct: 661 TEFSR-HVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATG 719 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 VRGI L D+VVSLI+PRG+G ILT TQNG+GKRTAV+EYPTKSRATKGVISIKV+ERN Sbjct: 720 VRGINLQGEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN 779 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G VVGAVQVD DQIMMITDAGTLVRTRVSE+SIVGRNTQGV LIRTAEDE+VVGLQRVA Sbjct: 780 GKVVGAVQVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVA 839 Query: 841 EPVDEEDLDTIDGSAAE 857 EPV++E+LD + E Sbjct: 840 EPVEDEELDGVVKVEGE 856 >UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYRA_PSEAE Length = 923 Score = 1109 bits (2868), Expect = 0.0, Method: Composition-based stats. Identities = 587/923 (63%), Positives = 726/923 (78%), Gaps = 52/923 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +LA+EI PVNIE+ELK SYLDYAMSVIVGRALPD RDGLKPVHRRVLYAM+ LGNDWN Sbjct: 1 MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVGDVIGKYHPHGD+AVYDTIVRMAQPFSLRYMLVDGQGNFGS+DGD+AAAM Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R+AK+AHEL+ADLEKETVD+V NYDGTE+IP VMPTKIPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVI+GCLA +D+ D++++ LM++IPGPDFPTA IINGR GI EAYRTGRG++ Sbjct: 181 NIPPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRI 240 Query: 241 YIRARAEVEV-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 YIRARA VE + GRE II+ E+PYQ+NKARLIEKIAELVKEK++EGIS LRDESDKD Sbjct: 241 YIRARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKD 300 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMR+VIE++R VGEVVLNNLY+QTQLQ FGIN+VAL GQP+ +NLKD++ FVRHRR Sbjct: 301 GMRVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRR 360 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVVTRRT++ELRKAR+R HILE AVAL+NIDP+IELI+ +PTPAEAK L+A W+ Sbjct: 361 EVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSA 420 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 V AM+ERAG DA RPE L+P++G+RDG YYL+ +QAQAIL+LRL +LTGLEHEKLL EY+ Sbjct: 421 VEAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQ 480 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 E+L+ I EL+RIL + RLMEVIREELE V+ +FGD RRTEI A+ D+ + DLIT+ED Sbjct: 481 EILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDR 540 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 VVT+SH GY K QPL+ Y+AQRRGGKGKSA +K+ED+I+ LLVAN+H +L FSS+G+V Sbjct: 541 VVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT--------------------- 638 Y ++ +++PEA+R ARGRP+VNLLPL++ ERITA+L + Sbjct: 601 YWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAV 660 Query: 639 ----------------------EFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL 676 G +FMATA GTVKKT L +F+R R++G +A+KL Sbjct: 661 LEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKL 720 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI 736 +GD LI +T G EVMLFS+ GKV+RF ES VR MG N GVRG+RLG+G +++S++ Sbjct: 721 EEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQLISML 780 Query: 737 VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIM 796 +P ILTA++ G+GKRT ++++P + R +GVI++ ERNG ++ AVQV + ++IM Sbjct: 781 IPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIM 840 Query: 797 MITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV--DEEDLDTIDGS 854 +I+D GTLVRTRV E+S+ GRNTQGV LI+ A DE +VGL+RV EP D+EDL + + Sbjct: 841 LISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEA 900 Query: 855 A------AEGDDEIAPEVDVDDE 871 A AE + E A E + ++E Sbjct: 901 AESLGESAESESEPAAEAEGNEE 923 >UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLW4_9FIRM Length = 808 Score = 1047 bits (2709), Expect = 0.0, Method: Composition-based stats. Identities = 436/839 (51%), Positives = 585/839 (69%), Gaps = 35/839 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +I PVN+E E+K+SY+DYAMSVIV RALPDVRDGLKPVHRR+LYAM G N Sbjct: 1 MDFGQGKIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSAR+VG+V+GKYHPHGDS+VYD IVRMAQ FS+RYML DG GNFGS+DGD AAAM Sbjct: 61 KPYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R++KIA ++ D++KETVDF NYD + K P+V+P K P LLVNG+SGIAVGMAT Sbjct: 121 RYTEVRMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHN+ EVI+G L ID D +I+ LM+ I GPDFPTA +I G+ GI +AY TGRG + Sbjct: 181 NIPPHNMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA A +E G+ IIV E+PYQVNKARL+EKIA+LV++K++EGI+AL DESD+ G Sbjct: 241 KMRANARIET-LSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVI+++RDA V+LN LY TQLQ SFG+ M+AL G+PKI+NLK+++ ++ H+ + Sbjct: 300 MRIVIDLRRDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQED 359 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+TRRT ++L+KA RAHILE L +AL ++D +I IR + T A+ AL++ Sbjct: 360 VITRRTRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISG------- 412 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + L+E+QAQAILDLRLQ+LTGLE EK+ +EY+E Sbjct: 413 ---------------------------FKLSEKQAQAILDLRLQRLTGLEREKIEEEYQE 445 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 +L I E IL R++ +I++EL+ V+ +FGD RRT +T ++++I++EDLI +EDVV Sbjct: 446 VLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDARRTRLTVDTSEIDVEDLIAEEDVV 505 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +TL+H Y+K L Y Q RGGKG KE+DF++ LL+ TH IL F++RGRVY Sbjct: 506 ITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVY 565 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +K Y++ EA+R A+G I+NLL LE+DE+ITA++ V F +FMAT G VKKT L Sbjct: 566 HLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQVKGFNPDAYLFMATKKGIVKKTSL 625 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 EF L G AI L D DELIGV T GE +++L + G + F E VRAMG G Sbjct: 626 VEFKNLHKGGLNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAMGRAARG 685 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+GI L +GD+V+ + + +LT T GYGKRT +EY ++R KG+I++KVTE+ Sbjct: 686 VKGISLNDGDEVIGMDTLSPNAEVLTVTAEGYGKRTETSEYRAQNRGGKGLINLKVTEKT 745 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 G V+G V ++M+IT G ++RT +S+IS++ RNTQGV L+ T E++ V + + Sbjct: 746 GDVIGLRVVHPDQELMLITTEGIVIRTNISDISVISRNTQGVKLMSTGENDIVASMAVM 804 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 104/265 (39%), Gaps = 16/265 (6%) Query: 588 DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF 647 ++ + GR+ ++ +L G L ++ E I E V Sbjct: 452 EYKAILADEGRILAIIKDELKAVKAK-FGDARRTRLTVDTSE----IDVEDLIAEEDVVI 506 Query: 648 MATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 T N +K+ L + R GK + + D + + +T+ ++ F+ G+V Sbjct: 507 TLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVYH 566 Query: 706 FKESSVRAMGCNTTGVRGIRL---GEGDKVVSLIVPRG---DGAILTATQNGYGKRTAVA 759 K + G I L + +K+ ++I +G D + AT+ G K+T++ Sbjct: 567 LKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQVKGFNPDAYLFMATKKGIVKKTSLV 626 Query: 760 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 819 E+ + I++ + + ++G D +++ T G + ++ +GR Sbjct: 627 EFKNLHKGGLNAINL---DDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAMGRAA 683 Query: 820 QGVILIRTAEDENVVGLQRVAEPVD 844 +GV I + + V+G+ ++ + Sbjct: 684 RGVKGISLNDGDEVIGMDTLSPNAE 708 >UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A n=17 Tax=cellular organisms RepID=Q0W7S4_UNCMA Length = 826 Score = 1045 bits (2703), Expect = 0.0, Method: Composition-based stats. Identities = 431/844 (51%), Positives = 587/844 (69%), Gaps = 37/844 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + PV IEEE+K SY+DYAMSVIVGRALPDVRDGLKPVHRR LY M LGN +K YKK Sbjct: 19 ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVGDV+GKYHPHGD+A+YDTIVRMAQ FSLRY LVDGQGNFGSIDGD AAAMRYTE+ Sbjct: 79 SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL +IA E++ADL+KETVDF N+D T K P V+P ++PNLL+NGSSGIAVGMATNIPPH Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+++G +A ID+ +I L+ ++ GPDFPTA I G+ GI+EAY TGRG + +RA+ Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAK 258 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 AE+ + G+ +IIV EIPY VNKARLIE IA+LVK+K++EGIS LRDESD+DGMRIVI Sbjct: 259 AEIVDE--NGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVI 316 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K+ A V+LN L+ TQ++ +FG+N +AL P ++LK+ I F++HR+EVVTRR Sbjct: 317 ELKKAANANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRR 376 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + FEL+KA+ R HIL L +AL NID + +IR + EAK L+ Sbjct: 377 SQFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEK------------ 424 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 Y L+++Q++AILD+RL +LT LE +K+ DE +L+ +I Sbjct: 425 ----------------------YGLSDEQSRAILDMRLARLTALERQKIDDERADLIKEI 462 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 A L +L S ++++I+ EL ++ ++GD+RRT+I ++ +I EDLI E+VVVT+S+ Sbjct: 463 AHLNEVLASPQMVLDIIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVENVVVTISN 522 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K P+ Y QRRGG G KEEDF+ L VA+THD+IL FS++G+VYS+KVY Sbjct: 523 TGYIKRMPVDTYRTQRRGGVGIVGMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVY 582 Query: 606 QL-PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 ++ P A+R ARG+ I+NL+ +E E I A++P+ F++ + M T GT+KKT L+ F Sbjct: 583 EIPPAASRQARGKAIINLINIEPGEAINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQ 642 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +R+ G +AI L GDELI V +T+G EV++ + GK RF ES VR MG GV GI Sbjct: 643 NIRSTGIIAIGLESGDELISVKMTNGSQEVLIATRNGKCNRFSESEVRTMGRPAMGVIGI 702 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 RL E DKV+++ + ++LT +NG+GKRT + EY R +G+I+IK T RNG VV Sbjct: 703 RLTENDKVIAMEIVSPGQSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVV 762 Query: 785 GAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 + V DQI++ + G + R V++I +GRNTQGV +++ +++VV + R+ Sbjct: 763 AVISVMPDDQIVIASKEGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKK 822 Query: 845 EEDL 848 E+++ Sbjct: 823 EDEI 826 >UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms RepID=GYRA_BACSU Length = 821 Score = 1042 bits (2696), Expect = 0.0, Method: Composition-based stats. Identities = 439/836 (52%), Positives = 595/836 (71%), Gaps = 36/836 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 ++ +NI +E+++S+LDYAMSVIV RALPDVRDGLKPVHRR+LYAMN LG +K YK Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VG+VIGKYHPHGDSAVY+++VRMAQ F+ RYMLVDG GNFGS+DGDSAAAMRYTE Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R++KI+ E++ D+ K+T+D+ DNYDG+E+ P VMP++ PNLLVNG++GIAVGMATNIPP Sbjct: 126 ARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPP 185 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 H L E+I+G LA ++ DI+I LME IPGPDFPTA I GR GI +AY +GRG + IRA Sbjct: 186 HQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRA 245 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 +AE+E +G+E IIV E+PYQVNKA+LIEKIA+LV++K++EGI+ LRDESD+ GMRIV Sbjct: 246 KAEIE-QTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIV 304 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE++RDA V+LNNLY QT LQ SFGIN++AL GQPK++ LK + ++ H++ V+ R Sbjct: 305 IEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRR 364 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT +ELRKA RAHILE L VAL ++D +I LIR++ T A+T L+ Sbjct: 365 RTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ----------- 413 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + LTE+QAQAILD+RLQ+LTGLE EK+ +EY+ L+ Sbjct: 414 -----------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKL 450 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTL 543 IAEL IL + +++E+IREEL ++E+F D+RRTEI + + I EDLI +E++VVTL Sbjct: 451 IAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTL 510 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 +H GYVK P S Y +Q+RGGKG E+DF++ L+ +THD IL FS++G+VY K Sbjct: 511 THNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAK 570 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 Y++PE R A+G PI+NLL +E+ E I AI+PVTEF + +F T +G K+T L++F Sbjct: 571 GYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQF 630 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 +R G +A+ L + DEL+GV LT G ++++ + G ++RF E+ VR MG GV+G Sbjct: 631 ANIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKG 690 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 I L + D VV + + + +L T+ GYGKRT EY T+SR KG+ + K+TE NG + Sbjct: 691 ITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL 750 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 V + +M+IT +G L+R +++ISI GR TQGV LIR AE+E+V + V Sbjct: 751 VAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806 >UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepID=A9GW54_SORC5 Length = 873 Score = 1037 bits (2681), Expect = 0.0, Method: Composition-based stats. Identities = 421/825 (51%), Positives = 566/825 (68%), Gaps = 8/825 (0%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 PV+I++EL++SYLDYAMSVI+GRA+PDVRDGLKPVHRR+LY+MN A+KK AR Sbjct: 11 VPVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCAR 70 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VVGDV+GKYHPHGD AVYD +VRM Q FSLRY L+DGQGN+GS+DGDS AAMRYTE RL+ Sbjct: 71 VVGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAAMRYTESRLS 130 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 ++A EL+ADL+K+TVDFV NYD +E P V+P K P LLVNGS GIAVGMATNIPPHNL Sbjct: 131 RMAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLG 190 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV 248 E+I+ +A I + D+++E L+ +PGPDFPT +I G+ GI +AY TGRG + +R R++V Sbjct: 191 EIIDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIYGKSGIVQAYTTGRGSITMRGRSQV 250 Query: 249 EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK 308 E K RE ++ EIPYQVNKARL+ KIAE +KEKR+EGIS +RDESD++GMRIV+E+K Sbjct: 251 EKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVELK 310 Query: 309 RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 +D +VVLN LY T LQ +FG+ +++ +G+P +++LKD ++ F+ HRREVVTRR F Sbjct: 311 KDIFPQVVLNQLYRLTDLQATFGVINLSIANGRPAVLSLKDTLSHFIEHRREVVTRRCRF 370 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 ELR+A + ++E L +A ++ID I+ IR + P +A+ L L + L RAG Sbjct: 371 ELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQK--LPLRGLGEFLRRAG 428 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 + G Y+L+E+QA+AIL++RL +LTGLE EKL EY EL I L Sbjct: 429 RPEPECAEADTR-----GDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERL 483 Query: 489 LRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGY 548 IL LM VI ELE ++ +FGDKRRTEI A+I +EDLI +ED+VVT+SH GY Sbjct: 484 RAILADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVVTISHAGY 543 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 +K P S Y AQRRGGKG +EED++ +L VA+TH ++ FS +G+V+ KVY++P Sbjct: 544 LKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYEIP 603 Query: 609 EATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT 668 +A R A+GR IVN + +E E++ AI PV F+ V T G +KKT L E+ R Sbjct: 604 QAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGETFVVTLTRRGQIKKTALNEYENYRD 663 Query: 669 AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE 728 G + +++ +GD+L LT G+ E+++ + G +RF E VR G T GV+GI L E Sbjct: 664 KGIIGVRIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRPTGRATMGVKGIELDE 723 Query: 729 GDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787 GD VV L V G +L + GYGK+T + E+ +SR KGVI I +ERNG VVG Sbjct: 724 GDVVVGLGVSGDGRDRVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERNGPVVGVA 783 Query: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN 832 V D+++++TD G ++RT+ SEI GRN QGV ++ +DE Sbjct: 784 MVSPSDEVLIVTDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828 >UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8CZP0_HALOH Length = 816 Score = 1036 bits (2679), Expect = 0.0, Method: Composition-based stats. Identities = 427/852 (50%), Positives = 596/852 (69%), Gaps = 38/852 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M ++ V+IE E+K +YLDYAMSVIV RALPDVRDGLKPV RR+LYA++ LG N Sbjct: 3 MDINNGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPN 62 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K +KKSARVVG+V+GKYHPHGD+AVYDT+VRMAQ FS RY LVDG GNFGSIDGDSAAAM Sbjct: 63 KPHKKSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAM 122 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R+A++ EL+ D++K TVDF N+D + + P+V+P ++PNLL+NG SGIAVGM+T Sbjct: 123 RYTEVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMST 182 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVI+G +A ID+ D+ ++ LM+ I GPDFPT II G+ I +AY+TGRG++ Sbjct: 183 NIPPHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRL 242 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R +A +E D K G+ II+ EIPYQVNKARL+EKIA LV+++++ GIS LRDESD+ G Sbjct: 243 KVRGKARIEED-KNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRG 301 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIVIE+K+ V +V+LN LY TQLQV++G+ M+AL G P+++ LK+++ ++ H++E Sbjct: 302 LRIVIELKKGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKE 361 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVTRRT ++L KA RAHILE L +ALANID I++LIR AP A+ L+ N Sbjct: 362 VVTRRTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIEN------- 414 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + LTE+QA+AIL +RLQ+LTGLE +K+ EYKE Sbjct: 415 ---------------------------FNLTEKQAEAILRMRLQRLTGLERDKIEAEYKE 447 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L ++IA IL +L+ +I++EL ++E+F D+RRTEI+ + D+++EDLI +E VV Sbjct: 448 LKEKIAYYRSILADEGKLLGIIKDELLELKEKFQDERRTEISIQAVDLDVEDLIPEEQVV 507 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +TL+H GY+K P+ Y +QRRGGKG KEEDF++ + +TH + L F+++G+VY Sbjct: 508 ITLTHHGYIKRMPIDIYRSQRRGGKGIIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVY 567 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++V+++P+A+R ARG IVNLL LE++ERIT ++P+ EF+E + M T NG +KKT L Sbjct: 568 RLRVFEIPQASRQARGTAIVNLLELEEEERITTVIPIREFDEERYLVMVTRNGMIKKTPL 627 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E+ R G + + L D DELI V T G V++ + GK + FKE+ VR+MG G Sbjct: 628 AEYES-RYTGLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSMGRTAMG 686 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+ I L +GD VV + V +L T+ GYGKRT + EY +SR KG+I+ +TE+N Sbjct: 687 VKAITLEDGDYVVGMGVDSEGDDLLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKN 746 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G + G V + +++IT G ++RTRV IS +GRNT GV +IR E + VV L R++ Sbjct: 747 GNLAGVKVVREDHDLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARIS 806 Query: 841 EPVDEEDLDTID 852 +E+D++ +D Sbjct: 807 P--EEKDIEEMD 816 >UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organisms RepID=GYRA_STAES Length = 893 Score = 1035 bits (2677), Expect = 0.0, Method: Composition-based stats. Identities = 426/878 (48%), Positives = 595/878 (67%), Gaps = 41/878 (4%) Query: 1 MSDLAR-EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDW 59 M++L + I NI E++ S+LDYAMSVIV RALPDVRDGLKPVHRR+LY +N G Sbjct: 1 MAELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 60 Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 119 +K YKKSAR+VGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDGQGNFGS+DGD AAA Sbjct: 61 DKPYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAA 120 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 MRYTE R+ KI EL+ D+ K+T+DF+DNYDG E+ P V+P + PNLLVNG++GIAVGMA Sbjct: 121 MRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMA 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNLTEVI+G L+ + DI+I LME I GPDFPTA ++ G+ GI AY TGRG Sbjct: 181 TNIPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGS 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-K 298 + +R+RAE+E + GR+ I+V EIP+QVNKAR+IEKIAELV++K+++GI+ LRDE+ + Sbjct: 241 IQMRSRAEIE-ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLR 299 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 G+R+VI+V++DA V+LNNLY QT LQ SFG+NM+AL +G+PK++NLK+ + ++ H+ Sbjct: 300 TGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQ 359 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 + VV RRT + L+KARDRAHILE L +AL +ID II IR + T A +L Sbjct: 360 KTVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER----- 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + LTE+QAQAILD+RL++LTGLE +K+ EY Sbjct: 415 -----------------------------FKLTERQAQAILDMRLRRLTGLERDKIESEY 445 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQE 537 ELL+ I EL IL + L++++R+EL ++E+FGD+RRTEI D+ EDLI +E Sbjct: 446 NELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEE 505 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 +V+TLSH Y+K P+S Y +Q RGG+G +EDF+ +L+ +THDH+L F+++G Sbjct: 506 QIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKG 565 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVK 656 RVY +K Y++PE +R ++G PI+N + LE DE I+ ++ V + E E + AT G VK Sbjct: 566 RVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVKDLESEEDYLVFATKQGIVK 625 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 ++ L+ F+R+ GK+AI + DELI V LT+G +++++ +A ++RF ES++R +G Sbjct: 626 RSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLGR 685 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGD--GAILTATQNGYGKRTAVAEYPTKSRATKGVISI 774 GV+GI L EGD VV L V + +L T+NGYGKRT V+EY +R KG+ + Sbjct: 686 TAAGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTA 745 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 +TERNG +V V + +M++T+AG ++R V +IS GR QGV L++ + + V Sbjct: 746 TITERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVS 805 Query: 835 GLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 + +V E D E+ + + EV D P Sbjct: 806 TVAKVNEEDDNEENADEAQQSTTTETADVEEVVDDQTP 843 >UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria RepID=GYRA_BUCAI Length = 830 Score = 1034 bits (2675), Expect = 0.0, Method: Composition-based stats. Identities = 552/846 (65%), Positives = 694/846 (82%), Gaps = 19/846 (2%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M D +REI VNIEEELKSSYLDY+MSVIVGRALPDVRDGLKPVHRR+L+AM +L NDWN Sbjct: 1 MKDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSAR+VGDVIGKYHPHGDSAVYD IVRMAQ FSLRYML+DGQGNFGS+DGDSAAAM Sbjct: 61 KAYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R++KIAHEL+ DLEK TV+F+ NYDGTE IP+++P KIPNLL+NGSSGIAVGMAT Sbjct: 121 RYTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVINGCLAYID+ DI++E L++HIPGPDFPTAAIING+ GIEEAYRTG+GK+ Sbjct: 181 NIPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRA+ ++E + K +E+I+ +EIPYQVNK+RLIEKIAELVKEKR++GI+ALRDESDKDG Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+KR+A+ EV+LN LYS TQLQ+SFGINMVAL GQPK ++LK+I+ F+ HR+E Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQE 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ RR++FEL K R+R HILE L +AL NI+ IIE+I+++ +AK ++ W+ + Sbjct: 361 IIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKI 420 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++ YY +E+QAQAILDLRL K+T LE EK++ E+ + Sbjct: 421 NYLAKK-------------------HEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHND 461 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L+ + EL IL + ++ EVI+ EL ++ F DKRRT+IT N +DIN+EDLI QEDVV Sbjct: 462 LIKKTKELKEILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVV 521 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLSH GYVKYQPLS+Y AQRRGGKGKSAA+IKEEDFI+ L++ANTHD ILCFSSRG +Y Sbjct: 522 VTLSHSGYVKYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILY 581 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 MKVYQLPE++R ARGRPIVNLLPL ERITAILPV ++++ + +FM TA+G VKK+ L Sbjct: 582 WMKVYQLPESSRHARGRPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSL 641 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 ++F + R AG +AI L DELIGV LT G + +MLF+ GKVV+F E+SVR MG +G Sbjct: 642 SQFKKPRFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASG 701 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+GI++ + DKVVSLIVP+ G+IL AT+NGYGKRT ++++P KSRAT+GVISIK+T++N Sbjct: 702 VKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN 761 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G ++GA+QV + DQIMMITDAGTLVR RVSE+ ++ RNTQGVILIRT+++E VV LQ++ Sbjct: 762 GKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIV 821 Query: 841 EPVDEE 846 +P+ E+ Sbjct: 822 DPMIEK 827 >UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GYRA_STAAC Length = 887 Score = 1027 bits (2656), Expect = 0.0, Method: Composition-based stats. Identities = 432/879 (49%), Positives = 603/879 (68%), Gaps = 43/879 (4%) Query: 1 MSDLAR-EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDW 59 M++L + I NI E++ S+LDYAMSVIV RALPDVRDGLKPVHRR+LY +N G Sbjct: 1 MAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTP 60 Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 119 +K+YKKSAR+VGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDGQGNFGS+DGD AAA Sbjct: 61 DKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAA 120 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 MRYTE R+ KI EL+ D+ K+T+DF+DNYDG E+ P V+P + PNLL NG+SGIAVGMA Sbjct: 121 MRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMA 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNLTE+ING L+ + DISI LME I GPDFPTA +I G+ GI AY TGRG Sbjct: 181 TNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGS 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-K 298 + +R+RA +E + GR+ I+V EIP+QVNKAR+IEKIAELV++K+++GI+ LRDE+ + Sbjct: 241 IQMRSRAVIE-ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLR 299 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 G+R+VI+V++DA V+LNNLY QT LQ SFG+NM+AL +G+PK++NLK+ + ++ H+ Sbjct: 300 TGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQ 359 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 + VV RRT + LRKA+DRAHILE L +AL +ID II IR + T A +L Sbjct: 360 KTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR----- 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + L+E+QAQAILD+RL++LTGLE +K+ EY Sbjct: 415 -----------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEY 445 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQE 537 ELL+ I+EL IL + L++++R+EL +R++FGD RRTEI ++ EDLI +E Sbjct: 446 NELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEE 505 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 +V+TLSH Y+K P+S Y AQ RGG+G EEDF+ +L+ +THDH+L F+++G Sbjct: 506 QIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKG 565 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVK 656 RVY +K Y++PE +R ++G P+VN + LE DE I+ ++ V + E E + AT G VK Sbjct: 566 RVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKRGVVK 625 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 ++ L+ F+R+ GK+AI + DELI V LTSG++++++ ++ ++RF ES++R +G Sbjct: 626 RSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGR 685 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGD--GAILTATQNGYGKRTAVAEYPTKSRATKGVISI 774 TGV+GI L EGD+VV L V + +L T+NGYGKRT V +Y +R KG+ + Sbjct: 686 TATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTA 745 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 +TERNG VV V + +M++T+AG ++R V++IS GR QGV LIR +D+ V Sbjct: 746 TITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVS 805 Query: 835 GLQRVAEPVDEEDLDTIDGSAAEGDD--EIAPEVDVDDE 871 + +V E ++E + ++ +D E E V+DE Sbjct: 806 TVAKVKEDAEDETNEDEQSTSTVSEDGTEQQREAVVNDE 844 >UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms RepID=Q2IHQ4_ANADE Length = 907 Score = 1024 bits (2647), Expect = 0.0, Method: Composition-based stats. Identities = 450/897 (50%), Positives = 599/897 (66%), Gaps = 69/897 (7%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 VNIE+E++ SYLDY+MSVI+GRALPDVRDGLKPVHRRVLYAM+ G +NK Y K A V Sbjct: 27 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86 Query: 70 VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 129 VG+V+ KYHPHGD++VYD +VR+AQ ++LRY L+DGQGNFGS+DGD AAA RYTE RL + Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 ++ L+AD++K+TVD+ N+D + P V+PT+ PNLLVNGS+GIAVGMATNIPPHN+ E Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 VI+ + I++ ++ LM IPGPDFPTA II GR GI AY GRG + +RAR VE Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGIIRGRDGIRAAYEKGRGTIQVRARTVVE 266 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 + KT RETI+V EIPYQVNKA+L+E IAELV+EKR+EGIS LRDES ++GMRIVIE+KR Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 DA+ +VVLNNLY+ TQ+Q+ FG+ M+A+ GQP+++ LK+++ FV HRR+VVTRRT +E Sbjct: 327 DALAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYE 386 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 LRKAR+R HIL +AL +ID IIELI+ A A+ ++A Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 + L+E QA+AIL+++LQ+LTGLE +K+LDE E+ I L Sbjct: 431 ------------------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLK 472 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 IL S LME+I EL V++ F D+RRTEI + D++ EDLI +E++VVT+SH GYV Sbjct: 473 EILASEKVLMELIVGELREVKQLFADERRTEIQGEATDLSTEDLIAEEEMVVTVSHLGYV 532 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 K P+S Y AQ+RGG+GK+ A ++EDF++ L VA+TH ++L FS +G+VY +KV+++P Sbjct: 533 KRNPVSLYRAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPP 592 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFEE--------------------------- 642 A R A+G+PIVNL+ L E++ AILPV E Sbjct: 593 AGRTAKGKPIVNLVQLAPGEKVAAILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGP 652 Query: 643 GVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGK 702 VFM T G +KKT L +F R R AG + + + +GDELI LT G ++L +A G Sbjct: 653 PAFVFMVTRKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGM 712 Query: 703 VVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG------AILTATQNGYGKRT 756 +RF+ES VR MG GV+GI L EGD+VV+ +LT T NGYGKRT Sbjct: 713 AIRFEESDVRPMGRTAYGVKGITLEEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRT 772 Query: 757 AVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVG 816 +AEY ++R KG+I+IK TERNG VV A V D +++M+IT+AG L+R IS++G Sbjct: 773 ELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVIG 832 Query: 817 RNTQGVILIRTA-EDENVVGLQRVAEPVDE-EDLDTIDGSAAEGDDEIAPEVDVDDE 871 RNTQGV LI ++E VVG+ RVAE E E+ + E AP+ + D Sbjct: 833 RNTQGVRLITLESKEEQVVGVARVAETTPEAEEAGVREEPEGAAPVETAPQDEGGDA 889 >UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0LNR4_HALO1 Length = 891 Score = 1023 bits (2645), Expect = 0.0, Method: Composition-based stats. Identities = 450/869 (51%), Positives = 597/869 (68%), Gaps = 13/869 (1%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSD+A +TPV IE+E++SS++DYAMSVI+ RALPD RDGLKPVHRR+L+A L N WN Sbjct: 1 MSDIAN-VTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWN 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + Y K AR+VGDVIGKYHPHGDS+VYD +VRMAQ FS+RY LVDGQGNFGSIDGD AAM Sbjct: 60 RPYLKCARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+A++A +L+ADL+KETVD+ NYD E P V+PTK+PNLL+NG+SGIAVGMAT Sbjct: 120 RYTECRMARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL E+++ +A ++D D+ E L E +PGPDFPT II+GR GI A+ GRG V Sbjct: 180 NIPPHNLGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRAAHTLGRGAV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IR R + E K R+ I+V E+P+ VNK+R IE A LV++KR++GIS +RDESD+ G Sbjct: 240 VIRGRTQFETVRKE-RKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V E+KRDA +VVLNNL+ T LQ SF +NM+A+ G+P++++L+ + F+ HRR Sbjct: 299 IRVVFELKRDANEQVVLNNLFKMTALQTSFNVNMLAIVDGRPQVLSLRSALQVFIEHRRT 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV RR +FELR+AR+R I+E L +A+ ID +IE+IR + EAK L++ ++ + Sbjct: 359 VVRRRCLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSE--RMMGL 416 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 LERAG A E + G +L+ +QAQAILD+RL +LTGLE EK+ EY+E Sbjct: 417 DGFLERAGRPADEVEAVR-----TAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRE 471 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L + L ILG +L VI +EL +R+Q+ D RRTEI +I E LI ED+V Sbjct: 472 LWEITDYLEGILGDDVKLRGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMV 531 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT + +GYVK L EY AQ RGGKG A ++DF+ + VA+THDH+L F++ GRVY Sbjct: 532 VTRTRRGYVKRTALDEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVY 591 Query: 601 SMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 KVY+LP +R ++GRP VN++ L+ DE + +LPV EF + + FMAT GTVKKTV Sbjct: 592 QKKVYELPSGSRISKGRPFVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTV 651 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 F+R+R G AI + DGDEL+ V LT + +V+L + G+ +RF+E VR MG Sbjct: 652 AAAFSRIRVTGIKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPMGREAR 711 Query: 720 GVRGIRLGEGDKVVSLIVPRGD--GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GVRGI L GD VV + V D AILT +NGYGKRT ++ Y T+ R KG+I+IK T Sbjct: 712 GVRGIGLAGGDAVVGMSVFERDCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTT 771 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 ERNG V G V + D ++MI+ G L+R RV +I + R TQGV L+R E V L+ Sbjct: 772 ERNGPVSGVRLVGEDDHVIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLE 831 Query: 838 RVAEPVDEEDLDTIDGSAAEGDDEIAPEV 866 R+AEP D+ D + + + DDEI EV Sbjct: 832 RLAEPDDDADSEAVTPELGD-DDEIGNEV 859 >UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria RepID=GYRA_BUCBP Length = 847 Score = 1022 bits (2642), Expect = 0.0, Method: Composition-based stats. Identities = 525/838 (62%), Positives = 675/838 (80%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M ++A+EI ++IE+ELK+SYLDYAMSVI+GRALPDVRDGLKPVHRR+L+AM VL NDWN Sbjct: 1 MKEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSAR+VGDVIGKYHPHGD+AVYD IVRMAQPFSLRY+L+DGQGNFGSIDGDSAAAM Sbjct: 61 KTYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIR++KIA+EL+ DL+K TV F NYDGTEKIP+V+P KIPNLL+NGSSGIAVGMAT Sbjct: 121 RYTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHN+ EVINGCLA+IDD++I+++ LMEHIPGPDFPTA +ING+RGIE+AY+TG+GK+ Sbjct: 181 NIPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRA++ +E+ KT +++II++E+PYQVNKAR+I+ IA LVKEK++EGI+ LRDESDK+G Sbjct: 241 YIRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+K++ E++LN LYS TQL++SFGINMVAL HGQPK+M LK+I+ AF+ HRR+ Sbjct: 301 MRIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRK 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ RR++FEL K R + HILE L ++L NID II LI+ + T EAK L W + Sbjct: 361 IIMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHA 420 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + + + + + ++LT +Q QAIL+LRLQKLT LEH+KL+ EYK+ Sbjct: 421 QYTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQ 480 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L L IL + + L +++++EL +R+ FGDKRRT+I N +DIN DLI +E+VV Sbjct: 481 LFKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENVV 540 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +TLS+ GYVKYQ LS YEAQ+RGGKGK A + KEEDFI+ LLVANTHD ILCFSS+G +Y Sbjct: 541 ITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILY 600 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 MKVYQLPEA+R ARGRPIVNLLPL +ERITAILP++E+++ + +FMAT+ G VKKT L Sbjct: 601 WMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSKGMVKKTSL 660 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 EF + RT G +AI L DELIGV LT+G + +MLF+A+GK V F E VR G G Sbjct: 661 YEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVRKTGRTAIG 720 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+GI++ + DKVVSL+VP+ G IL T++GYGKRT + E+P KSRAT+G I++K+T++N Sbjct: 721 VQGIKIKKSDKVVSLVVPKKHGNILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKN 780 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 G+V+G +QV + DQI++IT+AGTLVRTRV EI I+GRNTQGVI+IRT++ E VV LQ+ Sbjct: 781 GIVIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKKEKVVALQK 838 >UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH79_ACIBL Length = 865 Score = 1020 bits (2637), Expect = 0.0, Method: Composition-based stats. Identities = 401/860 (46%), Positives = 558/860 (64%), Gaps = 29/860 (3%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + I P+NIEEE+K SYLDY+MSVI+GRALPDVRDGLKPVHRR+LYAM+ +G N+ + Sbjct: 20 PQNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHV 79 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K A+VVG+V+GKYHPHGDSAVYD +VRMAQ FSLRY LVDGQGNFGS+DGD AA RYTE Sbjct: 80 KCAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTE 139 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+ IA EL+AD++K+TVDFV N+D T P ++PTK+PNLL+NGS+GIAVGMATNIPP Sbjct: 140 ARMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPP 199 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNLTE+++ C+ +++ +++ +++ + GPDFPT I+G+ GI+ AY+ GRG+ +RA Sbjct: 200 HNLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFIHGKGGIKNAYQNGRGRFMMRA 259 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + VE ++ I+V EIPYQVNK+ LI+KIA+LV +K ++ IS +RDESD+DGMRIV Sbjct: 260 KVAVE--HLPNKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRIV 317 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KR A E+VLN LY TQ+Q SF + +A+ + QPK M L + F+ HR +VV R Sbjct: 318 IELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQPKEMGLVQALNHFIDHRIDVVRR 377 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT + L+KA+DR HILE +AL ++D +I +IR + A+A+ LVA Sbjct: 378 RTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITINTT 437 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 +A + +QA AIL+L+L +LT L +++ E K++ ++ Sbjct: 438 GKAPKVDPEKP--------------FSTRQADAILELQLHRLTRLSIDEITSELKDVRER 483 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 IAE IL S +L VI +ELE +R+ +GD+RRT I +A+++LEDLI E V VT+S Sbjct: 484 IAEYESILASEKKLRSVIVKELEQIRKDYGDERRTIIQDEAAELSLEDLIADEQVAVTVS 543 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H GY+K P+S Y QRRGG G+ ++EDF++ + VA+TH ++L F++ GRVY +KV Sbjct: 544 HSGYLKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKV 603 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG-VKVFMATANGTVKKTVLTEF 663 Y++PE +G+ I NL+ L+ E + AILPV EE VF T GTVKKT L +F Sbjct: 604 YEVPEIAAAGKGKHIGNLVALQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDF 663 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + + G +AI + DEL+ LT V L S EG +RF E+ VR MG GVRG Sbjct: 664 SNVMARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADVRIMGRPAYGVRG 723 Query: 724 IRLGEGDKVVSLIVPRGD------------GAILTATQNGYGKRTAVAEYPTKSRATKGV 771 + +G D +V + + + IL+ T+NGYGKRT V EY ++R KGV Sbjct: 724 MDIGAKDYIVGMAITPKERKKGKNGGADTANLILSVTENGYGKRTDVDEYRLQTRGGKGV 783 Query: 772 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE 831 I++K TERNG VV + V + + M+I+ G ++RT I GR+TQGV L+ + Sbjct: 784 INVKTTERNGKVVAIMLVTEDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGD 843 Query: 832 NVVGLQRVAEPVDEEDLDTI 851 V + + E T+ Sbjct: 844 KVAAAVVIPDDEKAEAEPTL 863 >UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GYRA_STRR6 Length = 822 Score = 1018 bits (2633), Expect = 0.0, Method: Composition-based stats. Identities = 408/854 (47%), Positives = 579/854 (67%), Gaps = 37/854 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + + VN+ +E+K+S++DYAMSVIV RALPDVRDGLKPVHRR+LY MN LG +K +K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+ GDV+GKYHPHGDS++Y+ +VRMAQ +S RYMLVDG GNFGS+DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R++KIA E++ D+ K TVDFVDNYD E+ P V+P + PNLLVNG++GIAVGMATNIPP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E I+ +D+ +++ + LME +PGPDFPT A++ G+ GI +AY TG+G + +R+ Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRS 242 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 R E+E KTGRE I+V E PY VNK ++ E I LV+EKR+EGI+A+RDES+++G+R V Sbjct: 243 RTEIET-TKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IEVKRDA V+LNNL+ TQ+Q +FG NM+A+ +G PKI++L+ I+ A++ H++EVV R Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT F+ KA RAHILE L +AL +ID +I +IR + T AEA+ L++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + L+E+Q+QAILD+RL++LTGLE +K+ EY +LL Sbjct: 411 -----------------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEI-TANSADINLEDLITQEDVVVTL 543 IA+L IL +R+ ++I++EL+ V+ +F DKRRTE+ + EDLI + DV++TL Sbjct: 448 IADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITL 507 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S++GY+K E+ AQ+RGG+G +K++DF+ L+ +THDH+L F+++GRVY +K Sbjct: 508 SNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLK 567 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPV-TEFEEGVKVFMATANGTVKKTVLTE 662 Y++PE R A+G P+VNLL L++DE I ++ V ++ + +F T +G VK+T + E Sbjct: 568 GYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKE 627 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 F +R G A+ L D DELI V L G+ ++++ + G VRF +S+VR M TGV+ Sbjct: 628 FANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVK 687 Query: 723 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 G+ L EGD VV + +L T+ GYGKRT EYPTK R KG+ + K+TE+NGL Sbjct: 688 GVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGL 747 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 + G + V + +M+ITD G ++RT ++ IS GR T GV ++R +D +V VA Sbjct: 748 LAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVA 807 Query: 843 VDEEDLDTIDGSAA 856 EE + Sbjct: 808 EKEEVGTENETEGE 821 >UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8WIN1_EGGLE Length = 932 Score = 1017 bits (2631), Expect = 0.0, Method: Composition-based stats. Identities = 413/877 (47%), Positives = 588/877 (67%), Gaps = 53/877 (6%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + +E+++S+L+YAMSVIV RALPDVRDGLKPVHRR+LYAMN G N+ + KSAR VGD Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 VIGKYHPHGDSAVYDT+VR+AQPFS+R LVDG GNFGSIDGD AAAMRYTE RL K+A Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAM 210 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 EL+ DL+KETVDF NYD + + P V+P + PNLLVNGS GIAVGMATNIPPHNL E I+ Sbjct: 211 ELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETID 270 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 +D+ D++ E LM+ +PGPDFPT II G++GI +AY TGRG + +RA+ +VE + Sbjct: 271 ATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVE-EG 329 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 K GR +I+V EIPYQVN+ RL+EK+ ELV+EK++ IS + D +D+ G+ I+I++K+DA+ Sbjct: 330 KNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAI 389 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 +VVLN LY TQLQV FG+ M++L G P++++LK+++ ++ H+ EV+ RRT +EL K Sbjct: 390 PQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAK 449 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 A +RAHILE L +AL NID +I +IR + T EA + Sbjct: 450 AEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTER------------------- 490 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 + LT++Q AIL++RL++LTGLEH+K+ DE KELL++IA R+L Sbjct: 491 ---------------FGLTDKQTAAILEMRLRRLTGLEHQKIEDELKELLEKIAYFKRVL 535 Query: 493 GSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQ 552 + ++I+EEL V+++FG RRT ++ + D+++EDLI +E +VVT++ GYVK Sbjct: 536 SDDQLVHDIIKEELSEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRL 595 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 P++ Y Q+RGGKG S +K+ D+++ L VA+TH ++L FS++G+VY +KVY+LPEA+R Sbjct: 596 PVATYRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASR 655 Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 ARG IVNLLPLE+ E I+A++ +F + AT +G VKKT + ++R R G + Sbjct: 656 HARGTAIVNLLPLEKGETISAVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLI 715 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKV 732 AI L D D LI V + ++V++ S+ GK + + E VRAMG +T GVRG+ + KV Sbjct: 716 AISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVPPIAKV 775 Query: 733 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 + + + + D + T+ GYGKRT +AEYP R +GV +I +TE+ GL+ V + Sbjct: 776 LGMEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVAED 835 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ--------------R 838 D+IM++++ G VRT VS IS +GR+TQGV +++TA+ + V + Sbjct: 836 DEIMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVAISSRGKKKKASGAQV 895 Query: 839 VAEPVDEEDLDTIDGSAAEGDD----EIAPEVDVDDE 871 E +DE +D ++ A + E A + D+E Sbjct: 896 EGEELDENAIDELEDGAEGTAEIESVEEAENAEGDEE 932 >UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organisms RepID=GYRA_NEIGO Length = 916 Score = 1011 bits (2615), Expect = 0.0, Method: Composition-based stats. Identities = 480/903 (53%), Positives = 622/903 (68%), Gaps = 50/903 (5%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 E PV++E+E++ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM+ L N+WN AYKKS Sbjct: 15 ETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKS 74 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 AR+VGDVIGKYHPHGDSAVYDTIVRMAQ F++RY+L+DGQGNFGS+DG +AAAMRYTEIR Sbjct: 75 ARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIR 134 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 +AKI+HE++AD+E+ETV+F NYDG+E P V+PT+ P LLVNGSSGIAVGMATNIPPHN Sbjct: 135 MAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHN 194 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 LT+ IN CL +D+ I+ L++ I PDFPT A I G G+ E Y+TGRG+V +R + Sbjct: 195 LTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREGYKTGRGRVVMRGKT 254 Query: 247 EVEVDAKTG-RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 +E K G RE I++ EIPYQVNKA+L+EKI +LV+EK +EGIS LRDESDK GMR+VI Sbjct: 255 HIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVI 314 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+KR+ EVVLN LY T LQ SFGINMV L GQP+++NLK I++ F+RHRREVVTRR Sbjct: 315 ELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRR 374 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T+F L+KAR HI E AVAL+NID II+LI+ +P AEAK L+A PW V ML Sbjct: 375 TLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEEMLT 434 Query: 426 RAGDD--AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 R+G D RPE L G++ YYL+E QA AIL + L+ LTGL+ +++++ YK L+ Sbjct: 435 RSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMG 494 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 +I + + IL +R+ ++IR+ELE ++ +GD+RR+EI DI EDLI Q ++VVTL Sbjct: 495 KIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTL 554 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 +H GY+K QP ++Y+AQRRGG+GK AA K+EDFI+ L VANTHD+++CF++ G+ + +K Sbjct: 555 THGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIK 614 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 VY+LPE R +RGRPI N++ LE+ E+++AIL V EF E VF ATA G VKK L+ F Sbjct: 615 VYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAF 674 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE--------------- 708 +R G AI L +GD L+G T G D++MLFS GK +RF E Sbjct: 675 KNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADI 734 Query: 709 ---------------SSVRAMGCNTTGVR----------GIRLGEGDKVVSLIVPRGDGA 743 + G N GVR G+RL K+VSLI + Sbjct: 735 ETEISDDLEDETADNENTLPSGKN--GVRPSGRGSGGLRGMRLPADGKIVSLITFAPETE 792 Query: 744 -----ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI 798 +LTAT NGYGKRT +A+Y K++ +G I+I ERNG +V A V + D +M+I Sbjct: 793 ESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLI 852 Query: 799 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEG 858 T G L+RT+V +I GR GV LI E E +V L+RVAE E ++ + E Sbjct: 853 TSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVISNVTEP 912 Query: 859 DDE 861 + E Sbjct: 913 EAE 915 >UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYRA_MYCS2 Length = 842 Score = 1009 bits (2608), Expect = 0.0, Method: Composition-based stats. Identities = 384/864 (44%), Positives = 566/864 (65%), Gaps = 44/864 (5%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I PV+I++E++ SY+DYAMSVIVGRALP+VRDGLKPVHRRVLYAM G ++++ K Sbjct: 14 DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR V + +G YHPHGD+++YDT+VRMAQP+SLRY LVDGQGNFGS D AAMRYTE Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL +A E++ ++++ETVDF+ NYDG + P V+P++ PNLL NGS GIAVGMATNIPPH Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193 Query: 186 NLTEVINGCLAYIDD----EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 NL E+ +++ E+ + E +ME + GPDFPT+ +I G +GIE+ Y+TGRG + Sbjct: 194 NLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQGIEDTYKTGRGSIK 253 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDG 300 +R E+E D++ GR +I++ E+PYQVN I IAE V++ ++ GIS + D+ SD+ G Sbjct: 254 MRGVVEIEEDSR-GRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIV+E+KRDAV +VVLNNLY TQLQ SFG NM+++ G P+ + L +I +V H+ + Sbjct: 313 LRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVDHQLD 372 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT + LRKA +RAHIL L AL +D +I LIR + T A+ L+ Sbjct: 373 VIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIE-------- 424 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 L + + QAQAILD++L++L LE +K++D+ + Sbjct: 425 --------------------------LLDIDDIQAQAILDMQLRRLAALERQKIVDDLAK 458 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 + +IA+L IL +R ++R+EL+ + ++ GD RRT I +++ EDLI +EDVV Sbjct: 459 IEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAREDVV 518 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT++ GY K Y +Q+RGGKG A +K++D ++ V +THD IL F+++GRVY Sbjct: 519 VTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVY 578 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 K Y+LPEA+R ARG+ + NLL + +ERI ++ + +E+ + +AT NG VKK+ L Sbjct: 579 RAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKL 638 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAMGCNT 718 ++F+ R+ G VAI L +GDEL+G L S ED+++L SA G+ +RF + +R MG T Sbjct: 639 SDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRAT 698 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 +GV+G+R E D+++SL V R D +L AT GY KRT++ EY + R KG+++I+ Sbjct: 699 SGVQGMRFNEDDRLLSLNVVRPDTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDR 758 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + G +VGA+ VDD ++ IT G ++RT ++ GR T+GV L+ AE + ++ + R Sbjct: 759 KRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIAIAR 818 Query: 839 VAEPVDEEDLDTIDGSAAEGDDEI 862 A+ ++E ++I S A+ + Sbjct: 819 NAD--EDEAAESISESDADTAESP 840 >UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0H7_SALRD Length = 910 Score = 1007 bits (2603), Expect = 0.0, Method: Composition-based stats. Identities = 417/878 (47%), Positives = 585/878 (66%), Gaps = 28/878 (3%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + P+NIEEE+KSSY+DY+MSVIV RALPDVRDGLKPVHRRVLY M+ LG Sbjct: 1 MEADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQG 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 YKKSAR+VG+V+GKYHPHGDS+VYDT+VRMAQ FS+RY L DGQGNFGS+DGDSAAAM Sbjct: 61 ANYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+ +IA +++ D+ KETVD +N+DGT + P V+P PN+LVNG+ GIAVGMAT Sbjct: 121 RYTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL E I+ +AYIDD DI I+ LM+H+P PDFPT II G G+ EAY TGRG+V Sbjct: 181 KIPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRV 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA+ E + ++GR+ ++V E+PYQVNK+R +E+IA+ V+++R+EGI+ LRDESD+DG Sbjct: 241 VMRAKMH-EEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIVIE+K+ A E+V N +Y ++LQ +FG+NMVAL G+P+++ LKD I +V HR E Sbjct: 300 LRIVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHE 359 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 +V RRT ++L +A+DRAHILE L +AL ++D +I +IRH+P A+ L A + Sbjct: 360 IVVRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALS 419 Query: 421 AAMLERAGDDAARPEWLEPE---------------FGVRDGLYYLTEQQAQAILDLRLQK 465 L P + E D +LTE QA AIL LRL + Sbjct: 420 DDDLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSR 479 Query: 466 LTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA-N 524 LTGLE EK++ EY+++++QI E RIL S DR M +I+EEL V+E+F D+RRTEI Sbjct: 480 LTGLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTG 539 Query: 525 SADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVA 584 DI +EDLI ++ VVVT+++QG K P+ Y Q RGG G +E+DFI+ L V Sbjct: 540 GDDIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVC 599 Query: 585 NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE----- 639 ++HD +L F+ +G+ + ++ +++PE R A+GR I L+ ++ D+R+ A++ V++ Sbjct: 600 HSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFED 659 Query: 640 --FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLF 697 F V AT G VKKT L ++R R+ G + IK+ +GD+LI LT G++ V++ Sbjct: 660 EAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVA 719 Query: 698 SAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR----GDGAILTATQNGYG 753 S+ G+ V F E R MG NT GVRG+ L ++V +I D +L ++GYG Sbjct: 720 SSGGRAVHFDEGDARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAEHGYG 779 Query: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 813 KRTA+++Y + R KG+I++ T+R G +V V + +M+IT+ G ++RTRV EIS Sbjct: 780 KRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEIS 839 Query: 814 IVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTI 851 +GRNTQGV +I + + + + RVA+ + E D Sbjct: 840 TMGRNTQGVQVIDLKDGDAIADVTRVADTDEPEADDGT 877 >UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8A6_THEAS Length = 816 Score = 1002 bits (2590), Expect = 0.0, Method: Composition-based stats. Identities = 380/846 (44%), Positives = 537/846 (63%), Gaps = 37/846 (4%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 SDL +++ P+ +EEE+K SY+DYAMSVIVGRALPD RDGLKPV RR+LYAM LG ++ Sbjct: 8 SDLFQKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQ 67 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSARVVG+ +GKYHPHGD+A+Y+T+VRM+Q FS+RY LVDGQGNFGSIDGD AAMR Sbjct: 68 PFKKSARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPAAMR 127 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL + E++AD++++TVD++ N+D + + P V+P++IPNLLVNGS+GIAVGMATN Sbjct: 128 YTEARLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATN 187 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 +PPHNL EV++ C +D+ D+ + LM H+PGPDFPT +I GR GI +AY TGRGK+ Sbjct: 188 MPPHNLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIMGRDGIIDAYTTGRGKIV 247 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 +R AE+E DAK G++ I++ +IPY VNK+ LIE I + V+ +++GI+ +RDES+++G+ Sbjct: 248 VRGCAEIE-DAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGI 306 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 R+V+E+ RD+ +VL LYS+TQLQ +FG+ +AL G+P +NLK ++ F+ HRR V Sbjct: 307 RLVLELHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVELNLKGLLQIFIDHRRMV 366 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 V RRT + LRKA +RAHILE L AL ID +I LIR + P AK LV Sbjct: 367 VRRRTQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEE-------- 418 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 TE QAQAILD+RLQ+LT LE KL +E EL Sbjct: 419 --------------------------LGFTEAQAQAILDMRLQRLTSLEKHKLQEELAEL 452 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 + QIA ILG L V+REEL V+ +GD+RRT I + D++ EDLI + +VVV Sbjct: 453 MAQIARYRLILGDPAELDSVVREELLEVKRAYGDERRTVIEDSVDDVSYEDLIPETEVVV 512 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 ++ G+++ PL +Y Q RGGKG A +K ED + + V TH + F+ RGRV+S Sbjct: 513 AMTRDGFIRRMPLQDYRCQARGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFS 572 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 +K +PE G RG+ + + L++ E + + E VF+ T G K+ + Sbjct: 573 LKCLAIPEPKSG-RGKHVSTFISLDEGESVVT-FRDSALEGARFVFLVTKMGLAKRLPVG 630 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 E + AG+ + L + D + V T GED+++L +A+G+ +R E+ R G GV Sbjct: 631 ELEGITRAGRRILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRPQGRAAKGV 690 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 RGI+L D VV V +L +Q G GKRT E+ R GV ++++ ER G Sbjct: 691 RGIKLDPDDLVVGCDVIMPGRQVLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGERTG 750 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 +VGA V D D+IM+IT G +VR ++S + R+ G+ L+R E + V + + Sbjct: 751 HLVGAWGVADDDEIMVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVIRC 810 Query: 842 PVDEED 847 ++E + Sbjct: 811 SMEEGE 816 >UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V9C1_DESVV Length = 856 Score = 1002 bits (2590), Expect = 0.0, Method: Composition-based stats. Identities = 408/864 (47%), Positives = 576/864 (66%), Gaps = 43/864 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 E ++IE+EL+ SYL+Y++SVI+GRA+PDVRDGLKPVHRR+++A + LGN +N+ +KK Sbjct: 21 SEQQQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKK 80 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VGDVIGKYHPHGDSAVYD IVRMAQ FS+R LVDGQGNFGSIDGD+AAAMRYTE+ Sbjct: 81 SARIVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEV 140 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R++++A E +AD+EKETVDF NYD T P V+PT++PNLL+NGS+GIAVGMATNIPPH Sbjct: 141 RMSRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPH 200 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+ N L +DD+ +I+ LM+H+ GPDFPT + +G+ +AY TGRG V +R + Sbjct: 201 NLGELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGK 260 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E+E + K G + I++ EIPY +NK+ L+EKIA LV E+R++G++ LRDESD+ G+R+VI Sbjct: 261 VEIE-ERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVI 319 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 ++KR + ++V+N LY T L+ S+GINM+A+ +P++++LK ++ F+ HRRE++ RR Sbjct: 320 DLKRGTIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRR 379 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T ++LRKA RAHILE L +AL NID ++ LIR + TP EAK L+ Sbjct: 380 TRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR------------ 427 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E Q+QAILD+RLQ+LT LEHEKLLDEY+ELL +I Sbjct: 428 ----------------------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKI 465 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTLS 544 IL + + L +V+REE +R+ + KRRTE+ + + I +EDLI +DVV+TLS Sbjct: 466 EYFRSILENIEVLRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLS 525 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 +GY+K L Y+ QRRGGKG + ++DF+ L H ++L F++ G+++ +KV Sbjct: 526 RRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKV 585 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 +Q+ E +R A+G I NLLPLE+DE +T +L V EF E T G VK++ + + Sbjct: 586 HQVAEGSRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYA 645 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 R R G +A+ L D DELI V +D V+L + G +RF VR MG + TGV+G+ Sbjct: 646 RARKGGLIAVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGV 705 Query: 725 RLGEGDKVVSLIVPRGDG---AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 L D+VV+ V GD I++ + NGYGKRT + Y +SR KGV + +VT + G Sbjct: 706 ALSGDDRVVACAVLPGDDTSTEIMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTG 765 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 V+GA+ V D + ++++T ++R V E+ VGR T GV+L+R E VVG RV Sbjct: 766 DVIGAMPVRDDEALVLLTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRV-- 823 Query: 842 PVDEEDLDTIDGSAAEGDDEIAPE 865 DE ++ A + + APE Sbjct: 824 --DEREVVEESAPAQSSEQKTAPE 845 >UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MRF5_9FIRM Length = 878 Score = 1000 bits (2587), Expect = 0.0, Method: Composition-based stats. Identities = 374/856 (43%), Positives = 577/856 (67%), Gaps = 12/856 (1%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 S ++ V+IE+E++ S+L Y+M+V+V RALPDVRDG+KPVHRR++Y MN N + Sbjct: 8 FSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSS 67 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K Y+K A VG+V+GKYHPHGD++VYD +VR+AQ FS+RY L+DG GNFGS+DGD AA Sbjct: 68 KPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAY 127 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+AKIA EL+ D++K+T+D+ NYD P V+P K PNLLVNGS GIAVGMAT Sbjct: 128 RYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMAT 187 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EV + +A +D+ + SIE ++++I GPDFPT II G GI AY TGRGK+ Sbjct: 188 NIPPHNLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKI 247 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R +AE+ + R IIV EIPY VNK++L+E +L+++KR+EGIS LRDESDKDG Sbjct: 248 TLRGKAEIVEEGNHSR--IIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDG 305 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIV E+KRD +VVLN LYS TQLQ + G+ M+AL +G+PK + L +I+ ++ +++ Sbjct: 306 MRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQ 365 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++TRRT F+L+KAR+RAHIL+ +A+ NID +I ++R + + E K L+ ++ ++ Sbjct: 366 IITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMER-FKEDDL 424 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 A +L+RA + + E E G L+E+QA AI+ +RL +LTGLE +K++ E E Sbjct: 425 AKLLQRAMGENYKDVHFEHEIG-------LSEEQADAIVQMRLGQLTGLERDKVISELAE 477 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 ++++I + L IL S +R+ E+I+EE+ ++E++GD+RRT I S ++++EDLI +E+ V Sbjct: 478 IMEKINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECV 537 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T ++ GY+K QP+ Y Q+RGGKG S + +EEDF++ + +++THD+IL ++ G +Y Sbjct: 538 LTYTNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMY 597 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +K Y++PE ++ +RG IVNLL L++ ERI A++ ++F E T G +K+T L Sbjct: 598 KLKCYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPL 657 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +F +R G AI L +GDE+ LT G+ +++ + G + F E +R+MG G Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAG 717 Query: 721 VRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 VR I+L E D +V V D ILT T GYG+ +A+++Y ++R G+ + K+ + Sbjct: 718 VRAIKLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDD 777 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 G V G + D +++I+ G ++R R +++ ++ R GV +++ ++++ VV R Sbjct: 778 RGYVCGIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTR- 836 Query: 840 AEPVDEEDLDTIDGSA 855 E + D++ ++ ++ Sbjct: 837 TEHDETADIEEVEQAS 852 >UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R591_9CHLA Length = 865 Score = 997 bits (2578), Expect = 0.0, Method: Composition-based stats. Identities = 400/880 (45%), Positives = 557/880 (63%), Gaps = 45/880 (5%) Query: 1 MSDLAREIT-PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDW 59 MS EI P N+E+E+K SYL Y+MSVI+ RALPD RDGLKP RR+LYAM L Sbjct: 1 MSYTENEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSP 60 Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 119 ++K A++ GD G YHPHG+ +Y T+VRMAQ + +RY LVDGQGNFGS+DGD AA Sbjct: 61 GGKHRKCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAA 120 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 MRYTE RL + +LM DL+K TV+ V NYD T+K P V P K PNLL NGSSGIAVGMA Sbjct: 121 MRYTEARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMA 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNL E+I L + + +SI+ +M +P PDFPT II G RGI+EA+ TGRG+ Sbjct: 181 TNIPPHNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYRGIKEAFHTGRGR 240 Query: 240 VYIRARAEVEVDAKT-GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 + +RA VE + + ++ +IV EIPY VNK+RLIE+IA+L+ K + GI+ LRDESDK Sbjct: 241 LLLRAVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDK 300 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 DGMRI+IE+KR + EV+LN L+ + LQ++FG NM+AL G PK+MN+K +IAA+V HR Sbjct: 301 DGMRILIELKRGEIVEVILNQLFKYSDLQITFGCNMLALDKGLPKVMNVKQLIAAWVDHR 360 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 EVV RRT FEL KA RAHILE A+ ++D ++ +IR + EA+ L+ Sbjct: 361 IEVVRRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQR----- 415 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + LTE+QA A+LDL+L +LTGLE+EK+ +EY Sbjct: 416 -----------------------------FDLTERQANAVLDLKLYQLTGLEYEKINEEY 446 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 +ELL +I L +L S + ++IREEL +++ R+T+I A +++N+EDLI E Sbjct: 447 RELLQKIDYLRAVLASEAMVRDIIREELLEIQKNHRSGRKTQIIAAESEVNMEDLIANES 506 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRG 597 V++T+S Y+K P+ + QRRGG+G + +K EED I L VA+THD++L F++ G Sbjct: 507 VIITISEDDYIKRMPVDTFREQRRGGQGIAGMHLKREEDAIKGLYVASTHDYLLIFTNLG 566 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVK 656 R Y +KV+Q+PE R ++G+P++NLL + DE+I +L V+ FE+ + MAT G VK Sbjct: 567 RCYWLKVWQIPETGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQAYILMATKKGIVK 626 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 KT L+EF+ R G A+ +V+GDE++ L S ++MLF+ G VRF + VR MG Sbjct: 627 KTELSEFSHPRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRPMGR 686 Query: 717 NTTGVRGIRLGEG-DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 GV+G+ L + D VV G IL +NG+GKR+ V ++ +R GV SI Sbjct: 687 TARGVKGVTLKDDTDYVVGCEAVNGTETILIVCENGFGKRSNVEDFRQTNRGGVGVRSII 746 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 +ERNG VVGA+ V D D ++M++ G VR + ++ ++GRNTQGV L E + +V Sbjct: 747 TSERNGNVVGALCVTDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVA 806 Query: 836 LQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 +Q++ E D +D + + P V + EE Sbjct: 807 IQKL------EVSDDVDNAKVDTQPSAPPLVKEEGSDLEE 840 >UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GYRA_RICBR Length = 905 Score = 995 bits (2574), Expect = 0.0, Method: Composition-based stats. Identities = 438/892 (49%), Positives = 604/892 (67%), Gaps = 62/892 (6%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + + PVNIE+E+K SYLDYAMSVIV RA+PDVRDGLKPVHRR++Y+M+ GN N+ Sbjct: 3 DNNSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANR 62 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 AY+KSAR+VGDV+GKYHPHGDSA+YD++VRMAQ FSLR LVDGQGNFGS+DGD+AAAMR Sbjct: 63 AYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMR 122 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE R+AK+AH+L+ D++KETV F NYDG+E+ P V+P+ PNLLVNGS GIAVGMATN Sbjct: 123 YTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATN 182 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL EVI+ C Y+D+ DI I L+E + GPDFPT+ II G GI+ AY TGRG + Sbjct: 183 IPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIA 242 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 IR RAE+E + GR+ II+ EIPY VNKARL+EKIAE+VKEKR+EGIS LRDES+K+G+ Sbjct: 243 IRGRAEIE-NLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGI 301 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RI IE+K+D V EVVLN +YS TQLQ SFG+ M+AL G PK+MNLK++IAAFV R V Sbjct: 302 RIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVV 361 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 +T RTI+ L KARD+AHIL L +A++NID II +I+ A P AK L+A W N+ Sbjct: 362 ITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNIL 421 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 +++ D A E +G TE QA+AIL++RLQ+LT +E KL ++ K L Sbjct: 422 PLVKLVDDKAMLNE---------EGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNL 472 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 +I E L ILGS +RL+E+++EEL V+E+F R T I D ++EDLI +E++VV Sbjct: 473 ATEITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 T++ GY+K PLS Y AQ+RGGKG+S +++ED ++ V +TH +L FS+ G+VYS Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKT 658 +K+Y+LP + +GRP+VN+LPL+ DE IT I+P+ E + + + + ATA G ++++ Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCN 717 L +F ++++ GK+AI+L + D+LI V ++ ++L + GK +RF S+R + Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712 Query: 718 TTGVRGIRLGEGDKVVSLIVPRG------------------------------------- 740 + GVRG+RL E D V+S+ V +G Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDL 772 Query: 741 -----------DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV 789 + ILT T+NG+GKR++ Y R G+I++ + ++ GLVVG + V Sbjct: 773 TAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832 Query: 790 DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 D++M+IT++G L+R ++ + I GRNT GV L R + E VV +AE Sbjct: 833 KMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAE 884 >UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms RepID=GYRA_SYNY3 Length = 860 Score = 991 bits (2563), Expect = 0.0, Method: Composition-based stats. Identities = 386/894 (43%), Positives = 550/894 (61%), Gaps = 72/894 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D + ++ E+ SYL+YAMSVIVGRALPD RDGLKPVHRR+LYAM LG + Sbjct: 1 MTDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPD 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + ++K ARVVG+V+GKYHPHGD+AVYD +VRMAQ FS+R L+DG GNFGS+D D AAM Sbjct: 61 RPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAM 120 Query: 121 RYTEIRLAKI-AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 RYTE RL + + L+ D+E ETVDF+DN+DG+++ P V+P +IP LL+NGSSGIAVGMA Sbjct: 121 RYTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMA 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNL EVI+G +A I + +I+ + LM+ IPGPDFPT A I GR GI EAY TGRG Sbjct: 181 TNIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGS 240 Query: 240 VYIRARAEVEVDAKTGR---ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 + +R A +E GR + IIV E+PYQ NKA LIE+IA+LV +K+++GI+ +RDES Sbjct: 241 ITMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDES 300 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 D+DGMRIVIE+KRDA VVLNNLY QT +Q +FG N++AL +G P+++ +K + F Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWE 360 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R E +TRRT +ELRKA +R H+L+ L +AL N+D +I LIR A A AKT LV Sbjct: 361 FRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEG--- 417 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 + L+E QA AIL ++L++LT LE +K+ Sbjct: 418 -------------------------------FSLSEVQADAILQMQLRRLTALEADKITA 446 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 E+ EL +IA+ IL +R+ +I EELE ++ RRT I ++ DLI Sbjct: 447 EHDELQTKIADFQDILARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIAN 506 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + ++ L+ QGY+K P S + Q R +GK+AA+IK++D ++ L HD +L FS R Sbjct: 507 DQALILLTEQGYIKRMPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDR 566 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G VYS+ YQ+P A+R ARG PIV +LP+ +DE+IT+++ V+EF++ M T G +K Sbjct: 567 GVVYSLNAYQIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIK 626 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE--SSVRAM 714 KT L+ F+ +R G +AI LV+GD+L V L ED V++ S +G + FK +RA+ Sbjct: 627 KTALSAFSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRAL 686 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVP--------------------------------RGDG 742 G T GV+ +RL GD ++S+ + Sbjct: 687 GRATRGVKSMRLRSGDALISMDILPSQVVANIAVGSEDEPDEDLGGDTDAILEESDNPGP 746 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802 +L T G+GKR + ++ + RA GV +I+ ++ +V V+ D++M++T+ G Sbjct: 747 WLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDDQLVALHVVNADDELMIVTNRG 806 Query: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 ++R V++IS R+ GV + R D+ + + V +EE + + + Sbjct: 807 IIIRQSVNDISPQSRSATGVRVQRLDADDAIAAVALVPPSGEEELAEMSESEES 860 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 100/263 (38%), Gaps = 24/263 (9%) Query: 617 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF--NRLRTAGKVAI 674 P ++ E E ++ + + T G +K+ + F T GK A Sbjct: 485 TPRRTVIVQEDGE----LIDTDLIANDQALILLTEQGYIKRMPASTFGTQNRATRGKAAA 540 Query: 675 KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL---GEGDK 731 K+ D D + D+V+ FS G V + GV +++ + +K Sbjct: 541 KIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQMLPIPKDEK 600 Query: 732 VVSLIVPR---GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQ 788 + SL+ D + T+ GY K+TA++ + G+I+I + E + Sbjct: 601 ITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAFSNIR--ANGLIAISLVE-GDQLRWVRL 657 Query: 789 VDDCDQIMMITDAGTLVRTRVS--EISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 D +++ + G + + E+ +GR T+GV +R + ++ + + V Sbjct: 658 AKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSGDALISMDILPSQV--- 714 Query: 847 DLDTIDGSAAEGDDEIAPEVDVD 869 + A +DE ++ D Sbjct: 715 ----VANIAVGSEDEPDEDLGGD 733 >UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2RJ49_PORG3 Length = 859 Score = 989 bits (2558), Expect = 0.0, Method: Composition-based stats. Identities = 404/888 (45%), Positives = 579/888 (65%), Gaps = 53/888 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D I ++IEEE+K++Y+DY+MSVIV RALPDVRDG KPVHRRVLYAMN GN + Sbjct: 1 MTDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYT 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +K A VG+V+G YHPHGDS+VY +VRMAQP+SLRY LVDGQGNFGS+DGDS AAM Sbjct: 61 NPTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL++IA E++ D++KETVDF +N+D T + P V+PT+IPNLL+NG+SGIAVGMAT Sbjct: 121 RYTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYID-DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 N+PPHNL+E I+GC+AYI+ D DI +EGLM+++ PDFPT I G G++EA+ TGRG+ Sbjct: 181 NMPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGR 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 V IR+RAE+E E II+ EIPY VNKA L+ IA+L+ EKR++GIS + DES++ Sbjct: 241 VVIRSRAEIE--QHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRK 298 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMRIV+E+KRDA VVLN LY T LQ SF +N +AL G+P+++NLKD+I FV HR+ Sbjct: 299 GMRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQ 358 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVVTRR FELRKAR+RAHILE L +A+ NID +I +IR + AEA + L+ Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER------ 412 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L++ QA++I+D+RL+ LTGLE +KL E++ Sbjct: 413 ----------------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFE 444 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 E++ I L +L LME+++ EL ++E++GD R++EI S + N ED +D+ Sbjct: 445 EIMASINHLEALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDM 504 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 ++TLSH GY+K PLSE+ Q RGG G + +EEDF++ + A+ H I+ F+++GR Sbjct: 505 IITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRC 564 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV------TEFEEGVKVFMATANG 653 Y +KVY++PE + A+GR I NLL ++ D+++ A + + EF + T G Sbjct: 565 YWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRG 624 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA 713 +KKT+L F+R R G +AI L D D L+ V LT+G+ ++++ + G+ +RF ES VR Sbjct: 625 IIKKTLLEAFSRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP 684 Query: 714 MGCNTTGVRGIRLGEG--DKVVSLIVPR--GDGAILTATQNGYGKRTAVAEYPTKSRATK 769 G GV+G+ L + D+VV +I + + IL ++ GYGKR+ + +Y +R K Sbjct: 685 SGRTAMGVKGMTLDDDGEDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYRITNRGGK 744 Query: 770 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 GV ++ +TE+ G +V V D + +M+I +G +R +V+++SI+GR TQGV LI ++ Sbjct: 745 GVKTLNITEKTGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSK 804 Query: 830 -DENVVGLQRVAEPVDEEDLD-----TIDGSAAEGDDEIAPEVDVDDE 871 + + + V +E + T + + DV D Sbjct: 805 RGDEIASVCSVVSEEEENKAEKHADHTHEVLPQDDSSSSVENGDVSDM 852 >UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6XXU9_PEDHD Length = 869 Score = 985 bits (2547), Expect = 0.0, Method: Composition-based stats. Identities = 411/842 (48%), Positives = 585/842 (69%), Gaps = 43/842 (5%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +I ++I+E+++S+Y+DY+MSVIV RALPDVRDGLKPVHRRVLY M LG NK YK Sbjct: 10 NDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANNKPYK 69 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VG+V+GKYHPHGD++VY+T+VRMAQ +SLRY++V+GQGN+GSIDGDS AAMRYTE Sbjct: 70 KSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSPAAMRYTE 129 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R KIA +++AD+ K+TVDF N+D + + P V+P+K+PNLL+NGSSGIAVGMATN+PP Sbjct: 130 ARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMATNMPP 189 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HN+TE IN +AYID+ +I+I LM+ I PDFPT AII G G++EA+ TGRG++ +RA Sbjct: 190 HNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEAFETGRGRIVMRA 249 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 +AE+E A RE IIV EIPYQVNKA++IE+ AELV EK++EGIS ++DES+KDG+RIV Sbjct: 250 KAEIE--AAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGIRIV 307 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 E+KRDA +VLNNL+ QT LQ SF +N +AL G+P+++NL+D+I FV HR EVV R Sbjct: 308 YEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHYFVEHRHEVVVR 367 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT FEL +A+ RAHILE L +AL ++D +I+LIR + TP +A+T L+ Sbjct: 368 RTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEK----------- 416 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + L++ QA+AILD+ L++LTGLE +K+ DEY EL+ Sbjct: 417 -----------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNELMKT 453 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I L IL + M++I++EL ++E++GD+RRT I ++ D+++ED I E+VV+T+S Sbjct: 454 IEYLQSILDDESKRMQIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVITIS 513 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H+GY+K P +EY Q RGGKG + + EDFI+ LL+A+ H+++L F+ GR + ++V Sbjct: 514 HEGYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRV 573 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVT-----EFEEGVKVFMATANGTVKKTV 659 Y++PE TR ++GR I N++ + ++E+I A + V E+ E + M T GT+KKT Sbjct: 574 YEIPEGTRLSKGRAIQNIINIPKEEKIKAFIKVKNLKDQEYLENNYIIMCTKKGTIKKTS 633 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L ++R R G AI + +GD+L+ LT+G E+++ G+ +RF E VR MG T Sbjct: 634 LEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTAT 693 Query: 720 GVRGIRLG-EGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GVRG+ L E D+VV +I V IL ++ GYGKRT + +Y +R KGV +I VT Sbjct: 694 GVRGVTLAHEKDEVVGMIAVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT 753 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 ++ G +V V D D +M+I +G ++R VSE+ ++GR TQGV LI ++ + + Sbjct: 754 DKTGNLVAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVA 813 Query: 838 RV 839 R+ Sbjct: 814 RI 815 >UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYRA_CHLTR Length = 836 Score = 982 bits (2540), Expect = 0.0, Method: Composition-based stats. Identities = 389/868 (44%), Positives = 548/868 (63%), Gaps = 40/868 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + I P N+EEE+K SYL Y+MSVI+ RALPD RDGLKP RR+LYAM L Sbjct: 1 MLNKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPG 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 ++K A++ GD G YHPHG+S +Y T+VRMAQ +++RY LVDGQGNFGSIDGD AAAM Sbjct: 61 VKHRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL A L+ DL+K+TVD V NYD T+ P V P+K PNLL NGSSGIAVGMAT Sbjct: 121 RYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL E+I L + + SIE ++E +PGPDFPT II G GI Y TGRGK+ Sbjct: 181 NIPPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKL 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RAR VE ++ RE II+ E+PY VNK+RLIE+IAEL+ EK + GIS +RDESDKDG Sbjct: 241 RLRARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V+E+K+ EVV+N LY T +QV+FG NM+AL P+ MN+ +I+A++RHR + Sbjct: 301 IRVVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMD 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT +EL KA RAHILE AL+ +D +++ IR + AK LV Sbjct: 361 VIQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE-------- 412 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 L+ +E QA AIL+LRL +LTGLE +K+ EY E Sbjct: 413 --------------------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSE 446 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI-NLEDLITQEDV 539 LL++I ++L + + ++IREEL+ + + RRT I ++ D+ ++ED+I+ E V Sbjct: 447 LLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESV 506 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGR 598 ++T+S YVK P+ + Q+RGG+G + +K+ DF+ + A+T D++L F++ G+ Sbjct: 507 IITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQ 566 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 Y +KV++LPE R A+G+PI+N L + E++ A+L V FE+G +F+AT G VKK Sbjct: 567 CYWLKVWRLPEGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKK 626 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGV-DLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 L F R G A+++ DGDELI + + E++VMLF+ G VRF VR MG Sbjct: 627 VSLDAFGSPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGR 686 Query: 717 NTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 GVRG+ L E D VVS V D ++L NG+GKR+ V ++ +R + GV SI Sbjct: 687 AARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIV 746 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 + +RNG V+GA+ V DCD I++++ G +R + ++ ++GR TQGV L+ E + +V Sbjct: 747 INQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVA 806 Query: 836 LQRVAEPVDE-EDLDTIDGSAAEGDDEI 862 +++++ + E + + S G D I Sbjct: 807 MEKLSINTESVETEENLAASVQSGQDTI 834 >UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X523_FLAB3 Length = 884 Score = 981 bits (2536), Expect = 0.0, Method: Composition-based stats. Identities = 399/850 (46%), Positives = 572/850 (67%), Gaps = 46/850 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + P+NI +E+KSSY+DY+MSVIV RALPDVRDGLKPVHRRVLY M L N Sbjct: 1 MQKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + + KSAR+VGDV+GKYHPHGDS+VYD +VRMAQP+SLRY VDGQGNFGS+DGD AAM Sbjct: 61 RKHLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE +L KI+ E++ADL+K+TVDF +N+D + P VMPTKIP LLVNG+SGIAVGMAT Sbjct: 121 RYTEAKLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+ PHNL+E I+ +AYID+++I+I+ LM+HI PDFPT II G G+ +A+ TGRG++ Sbjct: 181 NMAPHNLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGIIYGYDGVRDAFHTGRGRI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA+ E R IIV EIPYQVNKA +I + AELVK++++ GI +RDESD+ G Sbjct: 241 VLRAKINFEEVG--NRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIV E+K DA+ VVLN LY T LQ SF +N +AL G+P+ +NLK+II FV HR E Sbjct: 299 LRIVYELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKGRPEQLNLKNIIHHFVDHRHE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVAL---ANIDPIIELIRHAPTPAEAKTALVANPWQL 417 VV RRT FEL+KA++RAHILE + ++D I +IRH+ PAEAK L+ Sbjct: 359 VVIRRTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKE---- 414 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + L++ QAQAILDLRL +LTG+E +K+ E Sbjct: 415 ------------------------------FDLSDLQAQAILDLRLARLTGMELDKIRAE 444 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 Y E+++ I + IL + R E+I+ EL ++E++GD+RR+EI + ++++EDLI E Sbjct: 445 YDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDE 504 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 VV+T+SH GY+K LSEY+ Q RGG G AA ++EDF++ ++ A H ++L F+ +G Sbjct: 505 KVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIVAATNHQYMLFFTEKG 564 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKV-----FMATAN 652 + + ++V+++PE ++ ++GR + NL+ +E D++I A + + ++ + M T N Sbjct: 565 KCFWLRVFEIPEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVMVTKN 624 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 712 GT+KKT L ++R RT G AI++ D D+L+G LTSG+ E+M+ + GK +RF E R Sbjct: 625 GTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPEEKAR 684 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRG--DGAILTATQNGYGKRTAVAEYPTKSRATKG 770 A+G + GVRGI L + D+V+ +IV + +L ++ GYGKRTAV +Y +R KG Sbjct: 685 AVGRGSIGVRGISLEDDDEVIGMIVVNDVENETVLVVSEKGYGKRTAVEDYRVTNRGGKG 744 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 VI++ +TE+ G ++ V D D +M+I +G +R ++E+ ++GRNTQGV +I + Sbjct: 745 VITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVINLKGN 804 Query: 831 ENVVGLQRVA 840 +++ + +V Sbjct: 805 DSIAAIAKVE 814 >UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PS29_9SPIO Length = 838 Score = 980 bits (2535), Expect = 0.0, Method: Composition-based stats. Identities = 389/866 (44%), Positives = 568/866 (65%), Gaps = 42/866 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P++IE E+K +Y+DY+MSVIV RALPDVRDGLKPVHRR+LY+M ++ +K A Sbjct: 12 LIPISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCA 71 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VGDV+G YHPHGD++VYD +VR+ Q FSLRY ++ QGNFG+I GD AA RYTE ++ Sbjct: 72 KIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A++A ++ D++K+TVDF+ N+D + + P V+P K P LL NGSSGIAVGMATN+PPHNL Sbjct: 132 ARLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNL 191 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+ AYID+ DI+I+ L ++I GPDFPT II G++GI +A++TGRGK+ +R R Sbjct: 192 REIAQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIFGKKGIRQAFKTGRGKILVRGRFN 251 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 +EVD K G+ETII E+PYQVN L+ KI EL +EK +EGI+A+ DE SD+ G+R+VIE Sbjct: 252 IEVDKK-GKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIE 310 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KR A+ +VVLN L+S+T LQ SFG+ +AL G+P+ + LK ++ FV HR+EVVTRR Sbjct: 311 LKRGAIAKVVLNQLFSKTALQSSFGVINLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRV 370 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F+L+KA +RAHIL AL VA+ NID +I++IR + A AK AL+ Sbjct: 371 RFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMER------------- 417 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + + QAQAI+D++L++LT LE E L E +EL I Sbjct: 418 ---------------------FSFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELEVLIE 456 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDVVVTLSH 545 L +L ++++ +I++E + E+FGD RRT+I +IN+EDLI +E +VV +S+ Sbjct: 457 HLKDLLAHPEKILALIKQETNELAEKFGDDRRTDIVSDEVEEINIEDLIKKEQMVVLVSN 516 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K P++ Y+ Q RGGKG ++A + E+DFID++ A+THD+I+ ++ G+ Y +KV+ Sbjct: 517 LGYIKRVPVTAYKRQNRGGKGSNSAALVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVH 576 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 ++PEA+R +RG I +LL + DE IT I+ + EF + MATA G VKK F Sbjct: 577 EIPEASRTSRGSHIKSLLAVSSDEEITTIVSLKEFSSDTYLLMATAGGIVKKVQTDSFQN 636 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +T G +AIKL +GD+L+ LT+G+DE+ML + +G+ +R E+ +R G + GV GIR Sbjct: 637 AKTRGIIAIKLDEGDKLVSAILTTGKDELMLVTRQGQALRVSEAEIRDQGRASHGVIGIR 696 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L GD++ + +G +L ++NGYGKR +E+ R T G VTE+ G VVG Sbjct: 697 LSGGDELTGALRIN-NGKLLVMSENGYGKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVG 755 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 + V D D+I+ IT G +R +VS I+++GR QGV ++ + ++GL VA Sbjct: 756 LLAVADDDEIVCITGQGKTIRVQVSSINVMGRAAQGVRILDIESPDQLIGLDVVA----R 811 Query: 846 EDLDTIDGSAAEGDDEIAPEVDVDDE 871 ED ++I +A+E ++D D Sbjct: 812 EDEESITPAASETTFNGELDLDGGDA 837 >UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacterium RepID=C5JAM2_9BACT Length = 890 Score = 972 bits (2514), Expect = 0.0, Method: Composition-based stats. Identities = 403/891 (45%), Positives = 567/891 (63%), Gaps = 60/891 (6%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 L +I + +EEE+K SYLDYAMSVIV RALPDVRDG K VHRR+LY + LG D K Sbjct: 5 TLFDDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKP 64 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 ++KSA +VG+V+GKYHPHGDSA+Y+T+VRMAQ FS+ L+DGQGNFGSIDGDSAAAMRY Sbjct: 65 HRKSALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRY 124 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R+AKI+ E++ADL+ TV F NYDG+ + P V+PT++P++L+NG+SGIAVGMATNI Sbjct: 125 TESRMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNI 184 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL E+++ C A +++ + + +ME + GPDFPT I G GI A+RTGRG + + Sbjct: 185 PPHNLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSGILNAFRTGRGSIVM 244 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 R +A VE + K +E I+V EIPYQVNKA+L+EKI EL ++K V+GI +RDES++ G+R Sbjct: 245 RGKASVE-ELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIR 303 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IVIE+KRD +V+LN LY TQLQ++F N++AL G P+ + LK + F+ R +V+ Sbjct: 304 IVIEIKRDGNSQVILNQLYKHTQLQMNFSANVLALVKGVPQTLGLKASLTCFLEFRYDVI 363 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT + L KARD+AHIL A+AL++ID +I LI+ A A L+ W ++ + Sbjct: 364 VRRTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKS 423 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 L L+ Y L+E QA AILDLRL KLTG+E E++ + + + Sbjct: 424 YL----------ALLQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTM 473 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 D I E + ILG +R+ +++ +E + ++ + RR+EI DI EDLI E++VVT Sbjct: 474 DAIQEYIDILGKPERVRKIMTDEFKTIKADYPTPRRSEILPAEDDIEDEDLIPSEEMVVT 533 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 +S GY+K PLS Y AQ RGGKG+S +KEED++ ++VANTHD +L F++ G+VY + Sbjct: 534 ISFGGYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRI 593 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPV-TEFEEGVKVFMATANGTVKKTVLT 661 V+QLP T A+GR I+N+LP+E+DE+IT+IL V E ++ + T+ G V++ ++ Sbjct: 594 PVHQLPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVS 653 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCNTTG 720 +F R+++ GK A+ L DG+ LI V ++ V+L + +G +RF + VR G +TG Sbjct: 654 DFERIQSNGKRAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTG 713 Query: 721 VRGIRLGEGDKVVSLIVPRG---------------------------------------- 740 VRGI+L D ++S V G Sbjct: 714 VRGIKLAHDDTIISASVLEGFNVDPAERALYLRARAAERGIQGETEDQDTTVEGALSDER 773 Query: 741 -------DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD 793 + ILT T G+GKRT+ EY T R G I ++ +NG VV A V D Sbjct: 774 LLELQEHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKNGHVVNAFPVIPQD 833 Query: 794 QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 QIM+IT+ G L+R V++I I GR TQGVIL+R +DE VV + R+ E + Sbjct: 834 QIMLITNKGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETEE 884 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 91/240 (37%), Gaps = 13/240 (5%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGEDEVMLFS 698 V + G +K+ L+ + GK + + + D + + + + D ++ F+ Sbjct: 526 PSEEMVVTISFGGYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFT 585 Query: 699 AEGKVVRFKESSVRAMGCNTTGVRGIR---LGEGDKVVSLIVPRGD----GAILTATQNG 751 G+V R + G I + + +K+ S++ + +L T G Sbjct: 586 NIGQVYRIPVHQLPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKG 645 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811 +R AV+++ K + + E ++ + + +++ T G +R ++ Sbjct: 646 QVRRNAVSDFERIQSNGKRAMVL---EDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATD 702 Query: 812 ISI-VGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDD 870 + + GR + GV I+ A D+ ++ + + + A + I E + D Sbjct: 703 VRVFSGRTSTGVRGIKLAHDDTIISASVLEGFNVDPAERALYLRARAAERGIQGETEDQD 762 Score = 66.1 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L D + + + ++T + GY KR ++ Y + R KG + + E V Sbjct: 513 LPAEDDIEDEDLIPSEEMVVTISFGGYIKRVPLSTYRAQLRGGKGRSGMTMKEE-DYVQD 571 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT---AEDENVVGLQRVAEP 842 + + D+++ T+ G + R V ++ I +G +I +DE + + V++ Sbjct: 572 IIVANTHDRLLFFTNIGQVYRIPVHQLPIGTPQAKGRAIINVLPIEKDEKITSILDVSKE 631 Query: 843 VDEED 847 +D+ Sbjct: 632 MDDAS 636 >UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepID=C7H1V9_9FIRM Length = 854 Score = 972 bits (2512), Expect = 0.0, Method: Composition-based stats. Identities = 394/866 (45%), Positives = 563/866 (65%), Gaps = 44/866 (5%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 ++I ++++E+++++LDY+MSVIV RALPDVRDGLKPVHRR+LY M+ GND + AY+ Sbjct: 13 TKKII-RDVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYR 71 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSA VG V+G YHPHGD++VYD +VR+AQ FSLRY LVDGQGNFGS+DGD AA RYTE Sbjct: 72 KSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTE 131 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R++++A E++ D++K+T+D+ N+D T+K P V+P + PNLLVNGS GIAVGMATNIPP Sbjct: 132 ARMSRMAVEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPP 191 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL+EVI+GC+AYI+D DI + GLMEHI GPDFPTA II GR GI AY TGRGK+ +R Sbjct: 192 HNLSEVIDGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRG 251 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 RA +E + K GR IIV EIPY VNKARLIE IA+LVKEKR+EGIS L DE+++ GMRIV Sbjct: 252 RATIE-EKKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIV 310 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 I+V++DA +VVLN LY TQLQ + G+ M+A+ H PK+M LK +I +V + EVV R Sbjct: 311 IDVRKDANPQVVLNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQKYVEFQDEVVRR 370 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP-AEAKTALVANPWQLGNVAAM 423 RT ++L+KAR+RAHILE L A +D +I IR +EAK A++ Sbjct: 371 RTQYDLKKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQ---------- 420 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + + QA AI+ L+L +L GLE K+ +E L Sbjct: 421 ------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELGSLNA 456 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 +I + IL R++E+++ EL ++ +FGD RRTEI + ++++EDLI +E V TL Sbjct: 457 KIRDWEEILADDARVLEIVKSELLEMKRRFGDDRRTEIETVTGEVDIEDLIAEEQCVYTL 516 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + GY+K Q + Y+AQ+RGG+G S KEED + + V +THD++L + +GR++ +K Sbjct: 517 TEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIK 576 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE--FEEGVKVFMATANGTVKKTVLT 661 Y + E +R ++G IVNLL L + E++T +L ++ EG V M T G +K+T L Sbjct: 577 GYTIAEGSRTSKGTNIVNLLQLAEGEKVTNMLCQSKDTANEGGFVTMVTKQGLIKRTPLE 636 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 ++ +R +G + I L +GD L LTSG D +++ + G+ +RF E R MG + GV Sbjct: 637 QYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMGRSGHGV 696 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 R I+L EGD+VV + + R + ILT T+NG G+R+ + Y +R KG+ + ++ Sbjct: 697 RAIKLAEGDEVVGVCICRENATILTVTENGKGRRSDIDTYRITARGGKGIRNYDASK--D 754 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 V VDD D +++ + G ++R +EI + R GV ++R E++ V+ L R Sbjct: 755 KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLARTDH 814 Query: 842 PVDEEDLDTIDGSAAEGDDEIAPEVD 867 DE +T++ A EGD+ A ++ Sbjct: 815 D-DEAQTETVE--AEEGDEPTAEQLA 837 >UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepID=C6RQR3_ACIRA Length = 985 Score = 967 bits (2500), Expect = 0.0, Method: Composition-based stats. Identities = 511/983 (51%), Positives = 652/983 (66%), Gaps = 121/983 (12%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 EI P+ IE+ELK SYLDYAMSVIV RALPDVRDGLKPVHRRVLYAM+ LGND+NKAY Sbjct: 2 SVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAY 61 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSARVVGDVIGKYHPHGDSAVY+TIVRMAQ FSLRY LVDGQGNFGS+DGDSAAAMRYT Sbjct: 62 KKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYT 121 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E+R+ K+ HE++ADLEK+TVD+ DNYDG+E+IP VMPT+IPNLL+NG++GIAVGMATN+ Sbjct: 122 EVRMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMA 181 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHN+TEV+N CLAY D+ +IS+EGLME+I GPDFPT II G+ GI +AYRTG+G+++IR Sbjct: 182 PHNMTEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIR 241 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + E D KTGR TI+ EIPYQVNKAR+IE+IAELVKEK++EGIS LRDESDKDGMRI Sbjct: 242 GKYHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRI 301 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 I++KR EVV+NNL+ TQL+ SF INMV L +GQPK+MNLKDIIAAF+RHR+EVVT Sbjct: 302 AIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVT 361 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT++ELRKAR+R HILE L VALANID II+ I+ + PAEA+ L+A W G V AM Sbjct: 362 RRTMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAM 421 Query: 424 LERAGDDAARPEWLEPE-----FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 LERAG + RP+ +E E FG+ +Y L+ Q AIL+LRL +LTGLE +KL EY Sbjct: 422 LERAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEY 481 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 E+L QI EL IL + LM VI+EEL LV +Q+GD RRTEI + D + EDLI +E Sbjct: 482 SEILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESRIDFSREDLIPEEQ 541 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 VV+T+S GY K QPLS+Y AQRRGG+GKSA +KE+DFI L+V + H +LCF++ G+ Sbjct: 542 VVLTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVGK 601 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK-- 656 VY ++V+++P+A+RG+RGRP++NLLPL+ +E ITAILPV + + +A VK Sbjct: 602 VYRLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTERLAAFKNFVKTN 661 Query: 657 -----------------KTVLTEFNRL--------RTAGKVA---IKLVD-GDELI---- 683 +T L + RT K + + D DE+I Sbjct: 662 TVKLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEIIIEFA 721 Query: 684 -GVDLTSGEDEVMLFSAEGKVVRFK----------------------------------- 707 + V + +A G V R + Sbjct: 722 QQAESVRKNYYVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQI 781 Query: 708 -------------ESSVRAMGCNTTGVRGIRLGEGDK----------------------- 731 E+ VRAMG + GVRG+R+ + Sbjct: 782 MLFSNEGKAIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVS 841 Query: 732 -VVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD 790 +VSL+V G +L A+ NGYGKRT V ++PTK R KGVI+IK +ERNG +VGAV +D Sbjct: 842 RIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAID 901 Query: 791 DCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE----- 845 + ++M+I+D GTLVRTR +E++ GRN QGV LIR E E +VG+ + ++ Sbjct: 902 ETKELMLISDGGTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVGVVSIEAVEEDEVEAF 961 Query: 846 ---EDLDTIDGSAAEGDDEIAPE 865 E + ++ E + + E Sbjct: 962 ETVESTEQLEVEKTETEHQQPQE 984 >UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphaproteobacteria RepID=Q2NAD1_ERYLH Length = 931 Score = 965 bits (2495), Expect = 0.0, Method: Composition-based stats. Identities = 417/933 (44%), Positives = 584/933 (62%), Gaps = 72/933 (7%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + ++I +E+K+SYLDYAMSVIV RALPDVRDGLKPVHRR+L+A G + Y+KS Sbjct: 3 DYERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKS 62 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A++VGDV+G YHPHGDSA+YD + RM Q +SLR L+DGQGNFGS+D D A+MRYTE R Sbjct: 63 AKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEAR 122 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 LAK+A+ L+ DL+K+TVDF DNYDG+ K P V+P + PNLLVNG+ GIAVGMATN+PPHN Sbjct: 123 LAKVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHN 182 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+GCLA+I + I+ E LM++IPGPDFPTA +I G+ G AY TGRG V +RAR Sbjct: 183 LGEVIDGCLAFIANPAITSEELMQYIPGPDFPTAPLILGQAGARAAYTTGRGSVLMRARH 242 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 E+E + + R++I+ IPYQV K+ L+EKIA+ KEKR+EGIS +RDES ++G+R+V++ Sbjct: 243 EIE-EKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVD 301 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KRDA EVVLN ++ T Q SF NM+A+ G+P+++ L+DI+ AFV R EV+TRRT Sbjct: 302 LKRDASPEVVLNQIWRYTPAQASFPANMLAIKGGRPEVLTLRDIVQAFVSFREEVITRRT 361 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL KAR+RAH+L L VA++N+D ++ +IR + P A+ L A W +G++A ++ Sbjct: 362 KFELNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQL 421 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 E +EP G Y L+E+Q +AILDLRL +LT L +++ DE KEL +I Sbjct: 422 I-------EAIEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIE 474 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 E L IL +L V+++EL +++++ R +EI + EDLI +ED+VVT++H Sbjct: 475 EYLSILADRGKLFGVLQDELVEIKDEYATPRVSEIAPAWDGLEDEDLIAREDMVVTVTHG 534 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K PL+ + AQ RGGKG+S K+ED + L V +TH+ +L F++ GRVY MKV++ Sbjct: 535 GYIKRTPLATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWK 594 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEF 663 LPE + +GRP+VNLLPL DER+T +L + E EE + + AT G V++ + F Sbjct: 595 LPEGSPTTKGRPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAF 654 Query: 664 NRLRTAGKVAIKLVD--GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTG 720 + T GK A+ V+ GD LIGV+L S + E+ L S GK +RF + R G Sbjct: 655 TNVPTGGKYAMGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIG 714 Query: 721 VRGIRLGEGDKVVSLIVPR-------------------------------------GDGA 743 VRG+ L + KVVS+ V G+ Sbjct: 715 VRGMTLKDDAKVVSMAVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEEGEEF 774 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKV----TERNGLVVGAVQVDDCDQIMMIT 799 ILT T NGYGK ++ EY T R +G+ +I ERNG VV + V Q+M++T Sbjct: 775 ILTLTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGSQLMLVT 834 Query: 800 DAGTLVRTRV-------------SEISIVGRNTQGVILIRTAEDENVVGLQRV---AEPV 843 D L+R + S+ GR + GV + A+ E++VG + EP Sbjct: 835 DQAKLIRMPIEFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVGAAIIDETEEPE 894 Query: 844 DEEDLDTIDGSAAEGDDEIAPEVDVD-DEPEEE 875 +E + ++G G +E AP+ +D D E E Sbjct: 895 NEAEEAVVEGMVGRGAEETAPDPTMDRDSNEGE 927 >UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacteria RepID=D0SBV6_ACIJO Length = 993 Score = 965 bits (2495), Expect = 0.0, Method: Composition-based stats. Identities = 518/980 (52%), Positives = 661/980 (67%), Gaps = 116/980 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 EI P+ IE+ELK+SYLDYAMSVIV RALPDVRDGLKPVHRRVLYAM+ LGND+NKAY Sbjct: 2 SVSEIRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAY 61 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSARVVGDVIGKYHPHGDSAVY+TIVRMAQ FSLRY LVDGQGNFGS+DGDSAAAMRYT Sbjct: 62 KKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYT 121 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E+R+ K+ HE++ADLEK+TVD+ DNYDG+E+IP VMPT+IPNLL+NG++GIAVGMATN+ Sbjct: 122 EVRMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMA 181 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHN+TEV+N CLAY ++ +ISIEGLME+I GPDFPT II G+ GI +AYRTG+G+++IR Sbjct: 182 PHNMTEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIYGKAGIVDAYRTGKGRLHIR 241 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + E D KTGR TI+ EIPYQVNKA+ IE+IAELVKEK++EGIS LRDESDKDGMRI Sbjct: 242 GKYHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRI 301 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 I++KR EVV+NNL+ TQL+ SF INMV L +GQPK+MNLKDI+AAF+RHR+EVVT Sbjct: 302 AIDLKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIVAAFIRHRQEVVT 361 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT+FELRKAR+R HILE L VALANID IIE I+ + PAEA+ L A W GNV A+ Sbjct: 362 RRTMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIAL 421 Query: 424 LERAGDDAARPEWLEPE-----FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 LE+AG + RP+ +E E FG+ +Y L+ Q AIL+LRL +LTGLE +KL EY Sbjct: 422 LEKAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEY 481 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 E+L QIAEL IL + LM VI+EEL L+ +Q+GD RRT I + D + EDLI +E Sbjct: 482 TEILGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESRIDFSREDLIPEEQ 541 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 VV+T+S GY K QPLS+Y AQRRGG+GKSA +KE+D+I L+V + H +LCF++ G+ Sbjct: 542 VVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGK 601 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 VY ++V+++P+A+RG++GRP+VNLLPL+ DE ITAILPV + + K +A V+ Sbjct: 602 VYRLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKKFKERLAEFKNFVRSN 661 Query: 659 VLT-EFNRLRTAGKVAIK------LVDGDEL----------IGVDLTSGEDE-------- 693 V T N + A A+K D DEL +GV+L++ + + Sbjct: 662 VATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNETVVEFA 721 Query: 694 -----------VMLFSAEGKVVRFKESSV------------------------------- 711 V + +A G V R + Sbjct: 722 DLAEKMRKNFFVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVAITDGEQQI 781 Query: 712 -----------------RAMGCNTTGVRGIRL------GEGD------------------ 730 R MG GVRG+R+ E D Sbjct: 782 MLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVA 841 Query: 731 -KVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV 789 ++VSL+V G +L A+ NGYGKRT V ++PTK R KGVI+IK +ERNG +VGAV + Sbjct: 842 SRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAI 901 Query: 790 DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLD 849 D+ ++M+I+D GTLVRTR SE++ GRN QGV LIR +E +VG+ V E+D+ Sbjct: 902 DESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEEILVGVVAVEAVEVEDDI- 960 Query: 850 TIDGSAAEGDDEIAPEVDVD 869 +D S ++ + EV+VD Sbjct: 961 -LDASIETTEETVVDEVNVD 979 >UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZEE7_NATMA Length = 861 Score = 963 bits (2489), Expect = 0.0, Method: Composition-based stats. Identities = 414/870 (47%), Positives = 571/870 (65%), Gaps = 38/870 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 AR + V IE+E++ SY+DYAMSVI GRALPDVRDGLKPVHRR+LYAM+ +G +++ Sbjct: 28 ARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSHR 87 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KS+ +VG+ +G YHPHGDSA+YDT+VRMAQ FS+RY LVDGQGNFGS+DGD AAA RYTE Sbjct: 88 KSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAPRYTE 147 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+A ++ EL+ D++K+TVDF NYD + PDV+P+ PNLLVNGSSGIAVGM+TNIPP Sbjct: 148 ARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIPP 207 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EVI+ + IDD D ++E LMEH+ GPDFPT A I GR I AY+TGRG++ +RA Sbjct: 208 HNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIVGRDAIYSAYKTGRGRIRVRA 267 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 EVE + K GRE I++ E+PYQ NKARL+E+IAE V E +EGIS LRDESD+DG+RIV Sbjct: 268 EFEVE-EWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIV 326 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +E KR A EVV N L L+ +FG+ +AL GQP++++LK+ + ++ HRREVV R Sbjct: 327 VECKRGANVEVVKNKLLENH-LEKTFGVINLALVDGQPQVLSLKETLEEYIAHRREVVRR 385 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R+ ++L +A DRAHILE A+ N + +++LIR++ T +AK AL Sbjct: 386 RSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQE------------ 433 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Y + +QA I+ ++L LT +E ++ DEY+++ + Sbjct: 434 ----------------------AYDFSAEQATHIVRMQLGSLTSMEAAEIEDEYEDVQAE 471 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I L IL S L+ VI++EL +++++ D RRT I + + EDLI +E+V V ++ Sbjct: 472 IERLTSILESEQELLAVIKDELSEIKDEYDDDRRTSIIEDQGTVTHEDLIPEEEVFVVMT 531 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 YVK P+S+++ Q RGGKG A +KE+D + + ANTHD++LCF+++G+VY +K Sbjct: 532 EDDYVKRMPISQFDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKT 591 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++PE R ARG+ VN+L L+ E ITAI+ F + V MAT +G VK+T +EF+ Sbjct: 592 YEIPEMGRTARGKSAVNILDLDPGEDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFD 651 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +R+ G +A L +GDEL+ V++T G ++++ S G +RF E VRAMG N GV GI Sbjct: 652 NIRSTGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAMGRNARGVNGI 711 Query: 725 RLGEGDKVVSLIVPR--GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 L D V L+ + +LT TQNGYGKRT ++EY T+SR KG+I IK ERNG Sbjct: 712 DLQGDDAVAGLVATDEGDEQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNGP 771 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 V A V DQ++M+++ G +VRTRV EIS VGRNT GVI++ + + V + V Sbjct: 772 VTTAKAVSADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVDVVPAA 831 Query: 843 VDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 V E D D D EG +E V+ D Sbjct: 832 VSEADDDGEDEDEDEGQNEDTETVEADAAN 861 >UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae RepID=C7MEZ8_BRAFD Length = 943 Score = 960 bits (2482), Expect = 0.0, Method: Composition-based stats. Identities = 362/888 (40%), Positives = 533/888 (60%), Gaps = 57/888 (6%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 IT +++ E++ SYLDYAMSVIV RALPDVRDGLKPVHRR++YAM G ++++ K Sbjct: 68 DRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPDRSFSK 127 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 A+VVG+V+G YHPHGDSA+YD +VR+ QP+S+RY L+ GQGNFGS D AAA RYTE Sbjct: 128 CAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAAAPRYTEC 187 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 ++A +A EL+ D+E++TVD NYD T P V+P + PNLLVNGS+GIAVGMATNIPPH Sbjct: 188 KMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 247 Query: 186 NLTEVINGCLAYIDDEDISIEGLME----HIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 NL EV + + + + + L+E I GPDFP+ A I G GIE+AYRTGRG + Sbjct: 248 NLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIVGTSGIEDAYRTGRGSIT 307 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDG 300 RA E GR +++V E+PYQVN L KIAE+VK +++GI+ + DE S + G Sbjct: 308 QRAVVSTEEI--NGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDETSGRTG 365 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 R+VI +KRDAV +VVLNNLY TQLQ +F NM+AL +G P+ +++ + + +H+ + Sbjct: 366 QRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANGVPRTLSIDSFVREWTKHQID 425 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT F LRKA ++ HI AL +D +I LIR +P EA+T L+ Sbjct: 426 VIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLM--------- 476 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 L + E QA AIL ++L++L LE +K+++E+ Sbjct: 477 -------------------------DLLEIDEIQANAILAMQLRRLAALERQKIIEEHDR 511 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L I E IL R +++ EEL + ++FGD RRTEI + D+ +EDLI +ED+V Sbjct: 512 LQALIEEYTAILADPQRQRDIVSEELAEIVDRFGDDRRTEILPFAGDMEMEDLIPEEDMV 571 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT++ GYVK +Y AQ+RGGKG A ++E+D ++ TH +L F+++GRVY Sbjct: 572 VTITRGGYVKRTREDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVY 631 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 K Y+LPEA R A+G+ + NL+ + DE I ++L + +E+ + +AT +G VKKT + Sbjct: 632 RAKGYELPEAPRDAKGQHVANLMAFQPDENIASVLAIDSYEDAQHLVLATESGLVKKTPM 691 Query: 661 TEFNRLRTAGKVAIKLVD--------GDELIGVDLTSGEDEVMLFSAEGKVVRFKESS-- 710 F+ RT G +AI L D D +I + +DE++L S G+ VRF Sbjct: 692 PAFDSSRTGGIIAINLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDGT 751 Query: 711 VRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 +R G T+GV G++ D ++++ V R D ++T T G+ KRT V EY + R G Sbjct: 752 LRPTGRATSGVTGMKFRHQDTLLAMDVIRPDSFVITVTDGGFAKRTTVDEYRLQGRGGLG 811 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 + K+ + G +VGA V++ D+++++ + G +VR++V+E+ GR T GV+ + + Sbjct: 812 IRVAKLPDDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKG 871 Query: 831 ENVVGLQ----RVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEE 874 + ++ + + + E + ID A +D + E D PE Sbjct: 872 DRILLVTTGQESEVDEEEAEAPEIIDADPAGSEDAV--ENSADAAPEG 917 >UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7T7_9BACT Length = 885 Score = 958 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 385/912 (42%), Positives = 553/912 (60%), Gaps = 76/912 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDL VNIE+ + ++YL Y++SV VGRA+PDVRDGLKPV+RR+LYAM LG + Sbjct: 1 MSDLGTRDFQVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKS 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 A K ARVVG+V+GKYHPHGD+A+YD +VR+AQ FS+R L++GQGNFG+IDGD AAA Sbjct: 61 HATVKCARVVGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAAS 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+ ++A EL+AD+EK+TV+ + N+D +E P+V+P + P LLVNG++GI VGMAT Sbjct: 121 RYTECRMERLAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +IPPHNL EVI+ + +D+ +++ LME++PGPDFPT AII GR + + Y+TG G + Sbjct: 181 SIPPHNLGEVIDATICLLDNPKATVDELMEYLPGPDFPTGAIIRGRYSMRQFYQTGHGSI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KD 299 IRA+A++ K GRE IIV EIPY + K +L++KIAELV +KR+ GIS LRDES + Sbjct: 241 KIRAKADI--IEKDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRT 298 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMRIVIE+KR A+G VVLN L++ T L+ + G M+ + H +P+ MNL ++ A++ HR Sbjct: 299 GMRIVIEIKRGAMGSVVLNQLFAHTMLETTIGCTMLVVDHNRPRTMNLVQVLQAYIDHRL 358 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EV+ RRT+FEL+KA+ RAHILE L ALANI+ ++++IR + + +A L+A Sbjct: 359 EVIVRRTLFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIAR------ 412 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + T+ Q AILD+RL +LTGL E L EY+ Sbjct: 413 ----------------------------FEFTQIQVDAILDMRLHQLTGLAIETLTAEYE 444 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 EL +I L + S + + VI++EL+ +RE++ D RRTEIT + D+N+ DLI + Sbjct: 445 ELKKRIEYLTALAASREMQLGVIKDELKEIREKYADPRRTEITIDDTDLNIADLIPRHSC 504 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V+T+S+ GY+K P Y Q RGGKG KEED ++ L A++HD I F+ RG + Sbjct: 505 VITVSNTGYIKRVPADTYRTQHRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFM 564 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVK 656 Y + VY++PE +R +GR I N++ +E E+I A+L V + E + MA+ G +K Sbjct: 565 YWLNVYEIPEGSRTGKGRAITNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIK 624 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF--KESSVRAM 714 K+ L F LR G A+ + + D+LIG ++ +E++L + G F + +R M Sbjct: 625 KSELALFKNLRRVGLRALVIEEDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPM 684 Query: 715 GCNTTGVRGIRLG-EGDKVVSLIVPRG------------------------------DGA 743 G GV G+R EGD VVSL + R Sbjct: 685 GRTARGVTGMRFKIEGDSVVSLEIIREHLYEEPAEDEEGEEVEVEVDVDEEMPVVGSGPE 744 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 803 +L T G GKR+ V+ Y R KGV++IK+ E V+ VQ+ + D+I++ T+ G Sbjct: 745 VLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLRE-GETVLSVVQITEEDEILLTTERGQ 803 Query: 804 LVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIA 863 LVR EI VGR + GV ++ + + G+ ++ E VD + AE + A Sbjct: 804 LVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVE-VDVPKSPATEEGGAESSETPA 862 Query: 864 PEVDVDDEPEEE 875 EV V + P E Sbjct: 863 -EVPVAEIPATE 873 >UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales RepID=GYRA_HELPJ Length = 828 Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 398/852 (46%), Positives = 573/852 (67%), Gaps = 42/852 (4%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 + + I V I+ ++ SYL Y+MSVI+GRALPD RDGLKPVHRR+LYAM+ LG A Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 YKKSAR+VGDVIGKYHPHGD+AVYD +VRMAQ FS+R LVDGQGNFGSIDGD+AAAMRY Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R+ K + E++ D++K+T+DFV NYD T K PD++P+++PNLLVNG++GIAVGMAT+I Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPH + E+I+ + + + ++ ++E + GPDFPT II G+ GI EAY+TGRG+V + Sbjct: 187 PPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKV 246 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 RA+ VE +E I++ E+P+Q NKA+L+E+I++L +EK++EGIS +RDESD++G+R Sbjct: 247 RAKVHVE--KTKNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIR 304 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +VIE+KRDA+ E+VLN+LY T ++ +F I ++A+++ +PKI L +++ F+ HR+ ++ Sbjct: 305 VVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTII 364 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRTIFEL KA+ RAHILE +AL NID I+ LI+ +P+P AK AL+ Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIER--------- 415 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + L+E Q++AIL++RLQ+LTGLE +K+ +EY+ LL Sbjct: 416 -------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLL 450 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 + I +L IL S DRL EV++ EL V+EQF RRTEI + I+ EDLI E +VV+ Sbjct: 451 ELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVVS 510 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 +S++GYVK L YE Q RGGKGK + E+DFI+ VANTHD +L +++G++Y + Sbjct: 511 MSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHL 570 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 KVY++PEA+R A G+ IVNL+ L +E+I A L +F + + T NG VK+T L+E Sbjct: 571 KVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSE 630 Query: 663 FNRLRT-AGKVAIKLVDGDELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 F R+ +G AI L +GDEL+G + +++ S G ++F VR +G T G Sbjct: 631 FGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRTTRG 690 Query: 721 VRGIRLGEGDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 V GIRL E D VV +V D +L+ ++NG GK+T Y +SR KGVI +K+T++ Sbjct: 691 VMGIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK 750 Query: 780 NGLVVGAVQVDDCDQ-IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 G +V + VDD + +M++T + ++R + +I GRN GV LI TA + VV + Sbjct: 751 TGNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNS 808 Query: 839 VAEPVDEEDLDT 850 + + E+L+T Sbjct: 809 CPKEEEPENLET 820 >UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA_TREPA Length = 813 Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 376/834 (45%), Positives = 533/834 (63%), Gaps = 37/834 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P++IE E+K +Y+DY+MSVIV RALPDVRDGLKPVHRR+LYAM G ++ +K A Sbjct: 12 LVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCA 71 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VGDV+G +HPHGD++VYD +VR+ Q FSLRY ++ QGNFG+I GD AA RYTE ++ Sbjct: 72 KIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A+IA ++ D++KETV FV N+D ++ P V+P + P LL NGSSGIAVGM TN+PPHNL Sbjct: 132 ARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNL 191 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+ AYI++ ++SI+ L + I GPDFPT II G+ GI ++Y TGRGK+ +RAR Sbjct: 192 REIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQSYETGRGKIVVRARFT 251 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 +E D+K GR+TII E+PYQVN L+ +I EL + K +EGI+ + DE SD+ G+RIV+E Sbjct: 252 IETDSK-GRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVE 310 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K+ +VVLN+L+++T LQ SF + +AL G+P+++ LKD++ FV HR +VVTRR Sbjct: 311 LKKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVRYFVEHRVDVVTRRA 370 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FELRKA++R H++ AL AL ID II LIRH+ AK L Sbjct: 371 HFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQ------------- 417 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + QAQAI+D+++++LTGLE E L E K+L + I+ Sbjct: 418 ---------------------FDFDNVQAQAIVDMQMKRLTGLEVESLRTELKDLTELIS 456 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTLSH 545 L +L S +++ V+++E + + FGD RRT+I +N + +++ED I +E++V+ +SH Sbjct: 457 SLEELLTSPQKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISH 516 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K P+S Y Q RGGKG S+A + DFI ++ A+THD+++ +SRGR Y +KVY Sbjct: 517 LGYIKRVPVSAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVY 576 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 +PE+ R RG I +LL + DE ITAI+ + EF VFMATA G VKK F Sbjct: 577 GIPESGRANRGSHIKSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVN 636 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +T G +A+KL GD L+ L EDEVML + +GK +R VR MG N++GV GI+ Sbjct: 637 AKTRGIIALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIK 696 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L D V ++ +L T+NGYGKR + +E+ R T G T+R G ++G Sbjct: 697 LTSEDLVAGVLRVSEQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIG 756 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 A+ V D D+ M IT G +R V IS++GR QGV ++ + VVGL V Sbjct: 757 ALAVLDTDECMCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGLSCV 810 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 16/239 (6%) Query: 617 RPIVNLLPLEQDERITA----ILPVTEF-EEGVKVFMATANGTVKKTVLTEFNRLRTAGK 671 R I ++ ++ I + L V +F ++ V + + G +K+ ++ + GK Sbjct: 477 RDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGK 536 Query: 672 --VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG--VRGIRLG 727 + L D + + S D VM ++ G+ K + G G ++ + + Sbjct: 537 GSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMV 596 Query: 728 EGDK----VVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 D+ +VSL + AT G K+ + T+G+I++K++ + Sbjct: 597 ATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAK--TRGIIALKLS-GGDTL 653 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 V AV V D D++M+IT G +R E+ +GRN+ GVI I+ ++ V G+ RV+E Sbjct: 654 VSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTSEDLVAGVLRVSEQ 712 >UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6XJ15_HIRBI Length = 981 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 439/936 (46%), Positives = 611/936 (65%), Gaps = 79/936 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 ++P+NI +E+K SYLDYAMSVIV RALPDVRDGLKPVHRR+L++M+ G ++KAYKKSA Sbjct: 43 VSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYKKSA 102 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDVIGKYHPHGD +VYD +VRMAQ FS+ L+DGQGNFGS+DGD AAAMRYTE++L Sbjct: 103 RVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTEVKL 162 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 K+A+ L+AD++K+TV+F +NYDG+EK P V+P + PNLLVNG GIAVGMATNIPPHNL Sbjct: 163 KKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPPHNL 222 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EVI+ +A I+D +I E L+E +PGPDFPT A+I GR G TGRG V +R+++ Sbjct: 223 GEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALIIGRAGSRSGLMTGRGSVIMRSKSS 282 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E + K GRE ++ EIPYQVNKA +IEKIAELV++KR+EGI+ +RDESD+DG+R+V+EV Sbjct: 283 IE-ELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVVVEV 341 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KRDA EVVLN L+ TQLQ SFG+NM+AL+ G+P++++LK I+ AF+ R EVV RRT Sbjct: 342 KRDASPEVVLNQLFRYTQLQTSFGMNMLALNSGRPELLSLKAILQAFIIFREEVVARRTK 401 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 FEL KAR RAH+L LA+A+ANID +I++IRH+P P+ A+ L+ W ++ +++ Sbjct: 402 FELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSLINLI 461 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 D + G L+E+QA+AILDLRLQ+LTGL +++ DE + L D+IA+ Sbjct: 462 ADRRTVANEV--------GEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIAD 513 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L IL S R+ME+I EEL +VRE+F RR++ D++ E I +ED+VV +H G Sbjct: 514 YLDILSSRPRVMEIITEELRVVREEFAIPRRSQFIEAELDMDDEAFIEKEDMVVMFTHGG 573 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Y K LS Y Q RGG+G+S KEED + R VANTH +L FSS G VY KV+++ Sbjct: 574 YAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRM 633 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEE---GVKVFMATANGTVKKTVLTEFN 664 P T +RG+ +VNLLPL++ E IT+++P+ E EE + + AT +G V++ L++F Sbjct: 634 PLGTPQSRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFT 693 Query: 665 RLRTAGKVAIKLVD------GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCN 717 ++ GK+A+KL + D ++GV + S +D+VML +A G+ +RFK VR G Sbjct: 694 QVNRNGKIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRT 753 Query: 718 TTGVRGIRLGEGDKVVSLIVPR---------------------------GDGAILTATQ- 749 +TGVRGIRL GD+V+S++V R GD I ++ Sbjct: 754 STGVRGIRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEP 813 Query: 750 --NGYGKRTAVAEYPTKSRATKGVISIKVTERN------------------GLVV----- 784 + G A++ + +TE GL+ Sbjct: 814 DADDEGDEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKLNA 873 Query: 785 -----GAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 A ++D D+IM++TDAG L+RT +I I GR TQGV ++RT+ +E VV ++R+ Sbjct: 874 GRRLAAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEERVVSVERL 933 Query: 840 AEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 AE + D + + + +G EI +V +D PE E Sbjct: 934 AEQESDVDENETEENV-DGSAEIV-DVAIDGAPEGE 967 >UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYRA_MYCGA Length = 846 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 384/870 (44%), Positives = 567/870 (65%), Gaps = 46/870 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + +I +EL++S+++YAMSVIV RALP+ RDGLKPVHRRVLY G +K Y+KSA Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VG V+GKYHPH DSA+Y+T+VRMAQPFSLRYML+DG GNFGSIDGDSAAAMRYTE RL Sbjct: 78 QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +KI+ E++ +++K+TVDFVDNYD +E+ P V+P+ PNLL NGSSGIAVGMATNIPPHNL Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 +E+I G + +E+ +IE L E I GPDFPTAA I G GI E + TGRG V +RA++E Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E + + I++ +IPY VNKA LI KIAELVK ++++GI+ LRDES+++G+RIVIE Sbjct: 258 IE-ELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIET 316 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KRD + EV+LN LY TQLQ +F + M+AL + QPK++NLK+ + ++ H+ +++ R+T Sbjct: 317 KRDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTN 376 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 FEL+KA+ AHI+E L +A NID +IE I++A +AK L+ Sbjct: 377 FELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTK-------------- 422 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Y L++ QA+AILD+RL+ L+GLE E L E +L + I + Sbjct: 423 --------------------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKD 462 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITAN-SADINLEDLITQEDVVVTLSHQ 546 L IL + +R +++I ++L+ + +FGD+RRT+I ++ I+ E LI E VV+T S + Sbjct: 463 LEEILQNKERRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSK 522 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K P+S Y+ Q RGG G E+D ++ L+V +TH +L F++ G+VY ++ +Q Sbjct: 523 GYLKRIPISAYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQ 582 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P +R ++G P +NL+ +E+DE++ ++L + +++ G F +T G VK+ +EF+R+ Sbjct: 583 VPLGSRISKGIPAINLISIEKDEKLMSLLSINDYDSG-YFFFSTKKGLVKRVKASEFSRI 641 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 + GK+AIKL + D L V T+G++E+ + + G +VRFKE VR+MG GV G++ Sbjct: 642 QNNGKIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKF 701 Query: 727 G-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 D+V+ L +L + G GK T EY +R +KGVI+IKVT + G ++ Sbjct: 702 KNPNDEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNIIN 761 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 V+ ++++MI+ G +VR ++E+S GRNT GV LI E E + + D+ Sbjct: 762 TQLVNGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVAIFDVEQDD 821 Query: 846 EDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 S G D E+ DD +++ Sbjct: 822 --------SQQVGSDNPDTELSSDDSNQDQ 843 >UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH72_9BACT Length = 859 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 390/880 (44%), Positives = 544/880 (61%), Gaps = 49/880 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 +TP IE+ L +YL Y+MSV VGRA+PDVRDGLKP RRVL+AM+ L +Y K A Sbjct: 11 VTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNLRKGSSYMKCA 70 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDVIGKYHPHGD +VYDT+VRMAQ FS+R ML+DGQGNFGSIDGDSAAA RYTE R+ Sbjct: 71 RVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDGDSAAAYRYTECRM 130 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++A EL+ DL+K TVD +DG++ P V+P + PNLLVNG++GI VGMAT+IPPHNL Sbjct: 131 ERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVGMATSIPPHNL 190 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EVIN +A +D I+IE +M+H+PGPDFPTA I G GI Y TGRG V++R RA Sbjct: 191 GEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISIGFDGIRRLYETGRGGVHLRGRA- 249 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 E+ K GRE I++ EIPY VNK +++KIAELV K + GIS+L DE S + G+R+V+ Sbjct: 250 -EIIEKNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESSSRVGIRVVVG 308 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K +A+ VV+N LY TQL VS G + + + QPK +NLK ++ A++ HR EV+TRR Sbjct: 309 IKTNAMATVVINQLYKHTQLAVSIGCQFLVVDNKQPKTLNLKQLLQAYLDHRLEVITRRI 368 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL KA RAHILE L A+ +ID +I++IR + +A L Sbjct: 369 KFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKER------------- 415 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + L+ +QA+AILD+RL +LTGL ++L EY+EL+ +IA Sbjct: 416 ---------------------FELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRIA 454 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 +L + ++V++EEL VR++F D+RRTE+ DIN EDLI + +T+S++ Sbjct: 455 HYRELLANRQMRLDVVKEELIEVRDKFADERRTEMRPGERDINYEDLIARASATITISNE 514 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K P Y Q RGGKG K++DF+ +L A THD+I+ F++ GR++ +KVY Sbjct: 515 GYIKRVPTEIYRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVYD 574 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEF-EEGVKVFMATANGTVKKTVLTEFNR 665 +PEATR ++G+ +VNLL E+ E + A++ V + +E + M+T NG VKKT L F Sbjct: 575 IPEATRVSKGKAMVNLLEFEKGEYVRAMISVDKVDDEDRFIMMSTRNGVVKKTALAAFKN 634 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +R AI L + D+LI LT G +++L + EG FKES R G T G RGIR Sbjct: 635 MRKKPIKAIVLDEDDDLIEAKLTDGNKKIILSTREGIACHFKESDCRTQGRVTRGCRGIR 694 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L E D+VV++ + IL T G GKR+ V +Y R KGV +IK+ E VV Sbjct: 695 LSESDQVVAMSIVEESEDILVVTAKGMGKRSCVDDYRLTKRGAKGVRNIKLKE-GDYVVE 753 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE-DENVVGLQRVAEPVD 844 + ++D D+I+M T G +VR I +GR +QGV +++ + + ++ RV E Sbjct: 754 VMMIEDTDEIIMTTMEGLMVRISAEPIRSLGRASQGVTIMKFKKASDLIISASRVVEVEA 813 Query: 845 EE---------DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 ++ + + EG + A + +E +E Sbjct: 814 DKDEENEEGEDSENAESANTEEGSEAPAESAEQAEESSDE 853 >UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia RepID=B2URM6_AKKM8 Length = 873 Score = 946 bits (2445), Expect = 0.0, Method: Composition-based stats. Identities = 382/889 (42%), Positives = 548/889 (61%), Gaps = 36/889 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I PV++ EL +S+LDY+MSVI+ RALPDVRDGLKP RR+LYAM L + Sbjct: 3 NNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKTR 62 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K +++VGD +G YHPHGD+A+Y T+V MAQ +S+R +LV GQGNFG+ DGD AA RYTE Sbjct: 63 KCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYTE 122 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +L+ + LMADL+K+TVDFV YD P V P+ PNLLVNG +GIAVGMATN+PP Sbjct: 123 AKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMPP 182 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EV++G A ID+ +++E L ++I GPDFPT + G GI+ +RTGRG V IR Sbjct: 183 HNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGFSGIDNYFRTGRGSVRIRG 242 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + ++EV +G++ +I+ E+PY VN+A L E+IAEL K+K + IS +RD SD+ I Sbjct: 243 KIDMEV-TDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTC-IE 300 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KRDA +VV+N LY T ++ SF +NM+A+H +PK + + D I ++ HRREVV R Sbjct: 301 IELKRDARPQVVMNQLYKLTSMETSFAVNMLAIHDNRPKTLAMMDAINFYIEHRREVVVR 360 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT + L A A LEA +AL ++D I +IR + EA+ L + ++ Sbjct: 361 RTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESL- 419 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + + ++ Y TE+Q +ILDLRL +LT LE++K+ EY ELL + Sbjct: 420 ---------GILIRSQASIQGDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVR 470 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I + L IL + R++ ++++EL+ +++++ R T I S D+ +EDLI + ++VT++ Sbjct: 471 IKDYLDILANESRVLGIVKDELKAIKDKYATPRVTRIIPFSGDMAIEDLIPNDTMIVTIT 530 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIK------EEDFIDRLLVANTHDHILCFSSRGR 598 H GY+K +EY Q RGGKG AA + E DFI+ L A HD+++ F++ GR Sbjct: 531 HSGYIKRTNSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGR 590 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE-----------FEEGVKVF 647 VY +VY++ EA R A+GR I NLL L+ +E I AIL + E V Sbjct: 591 VYVDRVYEIDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVV 650 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 AT +GTVKKT L +F R AG +AI L +G+ L+ +LTSG DE++L + +G +RF Sbjct: 651 FATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFP 710 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 E +R G NT GVRGIR GD VV+L + +L A++NG GKRT+ EY T+ R Sbjct: 711 EEDLRTQGRNTIGVRGIRPRAGDYVVALAIVDPQKTLLVASENGLGKRTSFDEYRTQGRG 770 Query: 768 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 G+ ++ T++ G VV A V D D++M++T AG VR +V+ + GR TQGV L+ Sbjct: 771 GTGIKTMNCTDKTGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTL 830 Query: 828 AEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDE-PEEE 875 E E++ + V ++E+ + AE +D A EV + E P EE Sbjct: 831 NEGESIQDISIVIPDDEDEE------APAETEDAGAGEVSGEMEAPAEE 873 >UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH3_9BACT Length = 854 Score = 945 bits (2444), Expect = 0.0, Method: Composition-based stats. Identities = 404/861 (46%), Positives = 552/861 (64%), Gaps = 38/861 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 A T V+I+EE++++YL+Y+MSVIVGRALPD RDGLKPV RRVL+AM+ +G AY+ Sbjct: 9 APRETTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYR 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDVIGKYHPHGD+AVYDT VR+ QPF+LRY L+DGQGNFGS+DGD+ AAMRYTE Sbjct: 69 KSARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTE 128 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 IRL ++A E+MA+L++ETVD+ NYD + + P V+P +P LL+NGSSGIAVGMATNIPP Sbjct: 129 IRLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPP 188 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HN+TEV+N L +D+ + + LM + GPDFPT +I GR GIE AYRTGRG + +R Sbjct: 189 HNITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVILGRSGIESAYRTGRGSIVMRG 248 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 EVE ++ R+ +++ EIPY VNKARLIEKIAELV+EK++E I+ +RDESD+DGMRIV Sbjct: 249 VVEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMRIV 308 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +E+KR+A+ +++N L+ T LQ SFG N V++ +G+P+ ++L + F+ R++VVTR Sbjct: 309 VELKREAIPRIIMNQLFLLTPLQSSFGYNAVSIVNGRPETLSLSQTLRVFLGFRKDVVTR 368 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT+F LRKAR+R HILE L A+ ID II LIR + +P EA+ LV+ Sbjct: 369 RTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVST----------- 417 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + +E QAQAILDLRLQ+LTGLE EK+ EY+E+ Sbjct: 418 -----------------------FAFSELQAQAILDLRLQRLTGLEREKIEAEYREVAAL 454 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 IA L IL S + L+EVIR+E ++ E+FGD RRT I + ++ E LI E +VTLS Sbjct: 455 IASLEAILASREALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVTLS 514 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 ++GY+K P + QRRGGKG+ +KE+D + L A HD +L F+ G+VY +K Sbjct: 515 YEGYIKRMPDAVLPTQRRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRLKT 574 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y+LPEA R ARG+ +++LL L DER+ AILPV FE + T G KKT L+E+ Sbjct: 575 YELPEAQRTARGKHLLSLLSLSPDERVAAILPVRSFEGDNLLLFGTVKGYFKKTRLSEYA 634 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +R G +A L +GD L V + + +++ + G +RF+ ++R G T GVR I Sbjct: 635 NIRQGGLIATVLEEGDRLARVLVLHPDRRLLVATRGGMSIRFEADNIRPTGRATRGVRAI 694 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 RL D VVS +L T+ G+GKR + + R KGV KVT G VV Sbjct: 695 RLSPDDSVVSFEEVSDSDLLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTPETGAVV 754 Query: 785 GAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE--DENVVGLQRVA-- 840 ++V + D I ++TD G ++R EI VGR +GV L+ ++ E +V Sbjct: 755 AILKVTERDDIDVVTDTGRVIRIPSEEIRKVGRGAKGVKLVSLSDSPQETIVCAAINPKR 814 Query: 841 EPVDEEDLDTIDGSAAEGDDE 861 EP E + + E E Sbjct: 815 EPTPLEAYLEKEPTGRESRGE 835 >UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=Cyanobacteria RepID=A8G5D2_PROM2 Length = 865 Score = 945 bits (2444), Expect = 0.0, Method: Composition-based stats. Identities = 360/877 (41%), Positives = 524/877 (59%), Gaps = 66/877 (7%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 +S+ I ++ E+ SYL+YAMSVIVGRALPD RDGLKPVHRR+LYAM LG Sbjct: 12 LSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSG 71 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + Y+K ARVVG+V+GKYHPHGD+AVYD +VRMAQ FS+R L+DG GNFGS+D D AAM Sbjct: 72 RPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAM 131 Query: 121 RYTEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 RYTE RL + E L+ D+E ETVDF DN+DG+++ P V+P +IP LL+NGSSGIAVGMA Sbjct: 132 RYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMA 191 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNL E+ING + I + I L E I GPDFPT I GR GI E ++TG+G Sbjct: 192 TNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGREGIRETFKTGKGS 251 Query: 240 VYIRARAEVEVDAKTGR---ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 + +R A +E GR + +I+ E+P+Q NKA LIE+IA+LV EK++EGIS +RDES Sbjct: 252 ITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDES 311 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 D+DGMRIVIE+KRD+ +VVLNNL+ T LQ +F N++AL G+P ++L+ ++ F+ Sbjct: 312 DRDGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLD 371 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R E + RRT F L+KA +R HI++ L +AL +D II LIR A A+ L Sbjct: 372 FRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEH-- 429 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 L+ Q+ AIL ++L++LT LE +K+ + Sbjct: 430 --------------------------------KLSSIQSDAILQMQLRRLTALEADKIKE 457 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 E+ EL +I +IL S +R+ E+I EEL + +F R+TEI ++ DLI Sbjct: 458 EHNELTRKINLYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIAN 517 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + VV L+ GY+K P++++E+ RG +GK+ + KE+D + + N HD +L FS R Sbjct: 518 DRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDR 577 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G Y++ Y++P ++R A+G P V LLP+ ++E+IT+++ V F + + M T G +K Sbjct: 578 GVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFIK 637 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF--KESSVRAM 714 +T L+ F+++R+ G +AI L DGD L V L+ D V++ S G + F + +R + Sbjct: 638 RTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPL 697 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVP--------------------------RGDGAILTAT 748 G GV+ + L EGD +VS+ V +L A+ Sbjct: 698 GRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGPWVLIAS 757 Query: 749 QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR 808 G GKR VA++ + RA G+ +IK ++ +V + + ++++++T+ G +VRT Sbjct: 758 AFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLKVLGEGEELLLVTEKGVIVRTN 817 Query: 809 VSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 +IS R GV L R + +++ + V E Sbjct: 818 ADKISQQSRAATGVKLQRLDDGDHLSEVVLVPREQIE 854 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 19/238 (7%) Query: 642 EGVKVFMATANGTVKKTVLTEFNRLR--TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSA 699 V + T G +K+ + +F + GK K + D++ + D ++LFS Sbjct: 517 NDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSD 576 Query: 700 EGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPR---GDGAILTATQNGYG 753 G V G V+ + + +K+ SL+ D +L T+ G+ Sbjct: 577 RGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFI 636 Query: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV--RTRVSE 811 KRTA++ + + G+I+I + E + + D +++ + G + R ++E Sbjct: 637 KRTALSAFSKIR--SNGLIAINL-EDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINE 693 Query: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAE------PVDEEDLDTIDGSAAEGDDEIA 863 + +GR +GV + E +N+V + + E+ + +D + E + Sbjct: 694 LRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGP 751 >UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia RepID=B1ZTK3_OPITP Length = 830 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 373/861 (43%), Positives = 538/861 (62%), Gaps = 46/861 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + +++ NI + ++++Y+DY+MSVI+ RALPD RDGLKPV RRVLYAM G N Sbjct: 1 MYTASEKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +A+ K A VVG+V+ YHPHGDS+VYDT+VRMAQP+ +RY L+D QGNFGS+DGD AAA Sbjct: 61 RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAY 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL IA +L+ D+E++TVDF NY + P V+P +PNLL+NGS+GIAVGM T Sbjct: 121 RYTECRLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL E+I+ A ID+ IS++ L + GPDFPT +I GR GI +TG+G V Sbjct: 181 NIPPHNLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIAGREGILSYLKTGKGIV 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 R +A E + K G E I+V EIPY VN+A L+ +IAELV +K+++GI LRDESD++ Sbjct: 241 RTRGKAHTE-EMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDENT 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 RIVIE+KR +VV+N L+ +T L+ SFG+ ++AL +PK MN+K++I ++ HRRE Sbjct: 300 -RIVIELKRGEQSKVVINQLFQKTALESSFGVTLLALDKKRPKQMNIKELIECYIEHRRE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVTRRT F L++A DRAHILE +AL N+D +++IR + EAK L+A Sbjct: 359 VVTRRTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAK------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y L+E+Q AIL+LRL +LTGLE K+ EY E Sbjct: 412 ---------------------------YPLSERQTDAILELRLYQLTGLERGKIEAEYLE 444 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L+ I EL IL S +L+ +I++EL ++E++ RRTEI A + + +ED+I E V Sbjct: 445 LMKLIEELRGILESEPKLLALIKKELAEMKEKYTSPRRTEIIAAAGEFRMEDVIPNEGCV 504 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T+SH G++K P++EY +QRRGGKG A EEDF+ L A+THD+IL F+S G+ + Sbjct: 505 ITVSHLGFIKRTPVAEYRSQRRGGKGVIGAETYEEDFVANLFTASTHDYILFFTSIGQCH 564 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + KVY +PE TR ++G+ + + L L + E+I A+L V +F E + AT G +KK+ L Sbjct: 565 AKKVYDIPEGTRASKGKSVSSFLRLAEGEKIAAMLCVKDFAEDRYLVTATKRGIIKKSAL 624 Query: 661 TEFNR-LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS-------VR 712 +++ R G + I L + D +IG LT+GE+E++L S +G VRF+E R Sbjct: 625 SDYANATREGGLIGINLQEADSVIGTVLTTGENELILVSHQGLAVRFRERDPESGEELFR 684 Query: 713 AMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 A G T GV G+R + D + + V + L A++ G G RT +Y +R GV Sbjct: 685 ATGRATGGVTGMRFKLKSDYLDVIEVVDHEAKFLVASEAGLGVRTRFEDYRLINRGGSGV 744 Query: 772 ISIKVTERNGL-VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 +I + E + + GA+ V + D++M++T G +R V +I R +GV L+ Sbjct: 745 WAIDLPEDGSIKLAGALSVREDDEVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPG 804 Query: 831 ENVVGLQRVAEPVDEEDLDTI 851 + ++ + R+ E +E + Sbjct: 805 DKLLSIARIVETEEESGAEAT 825 >UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9RT53_DEIRA Length = 812 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 395/844 (46%), Positives = 564/844 (66%), Gaps = 43/844 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I PV+I E+K+++++YAM+VIV RALPDVRDG+KPV RR++YAM G N + KSA Sbjct: 4 IQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 VVG+V+ +YHPHGDS++YD +VR+ Q +++RY LVD QGNFGS+DGD AAAMRYTE R+ Sbjct: 64 SVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEARM 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 K+A E++ADLEKETVD NYD T P V+P+ +PNLL+NG+SGIAVGMATNIPPHNL Sbjct: 124 TKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 TE+ NG LA ID+ I+++ +M H+ GPDFPT I + GI EAY TG + +R +A Sbjct: 184 TEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI-AKVGIREAYATGHAGLKVRGKAR 242 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRIVIE 306 +E + K GR II+ EIPYQ+NK L++ I+ + K ++ I ALRDESD+ + +RIVIE Sbjct: 243 IE-EGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301 Query: 307 VKRDA--VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +KR A +G +VLN LY TQLQ S+ + +++ +G+P+++ L D + F+ HRR+VVTR Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNGEPRVLPLIDTMRYFLDHRRDVVTR 361 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT+++LRKA++RAH+LE L AL +ID +I LIR + T AEA+ L+A Sbjct: 362 RTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMAR----------- 410 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + L+E QAQAILD+RLQ+L GLE EKL EY EL Sbjct: 411 -----------------------FGLSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKT 447 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I L ILG L I++E+ +R+++GD RR+ IT DIN EDLI ED+V+T++ Sbjct: 448 ITRLESILGDEKLLWREIKKEIRDIRDRYGDARRSVITELEEDINKEDLIAVEDMVITMT 507 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GYVK L+ Y Q+RGG+G S +++EED + V +THD++L F+ +GRV+ K+ Sbjct: 508 RAGYVKRTNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKI 567 Query: 605 YQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 Y LPEA R A+G I NLLP L DE I ++L V+ F++ AT +G +KK+++T++ Sbjct: 568 YDLPEAGRDAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGSFIFATKSGVIKKSLITDY 627 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + +AG +AI L GDELIGVD+ D+V+L + G+ +RF+ + VR G T GV G Sbjct: 628 ANITSAGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDTGRATQGVIG 687 Query: 724 IRLGEGDKVVSLIVPRG---DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 IRL EGD+VVS+ + G +G +L ++ G GKRT V++YP+K R GVI++ VT++ Sbjct: 688 IRLREGDEVVSMALVPGNDEEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKT 747 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G +V V +++M++T+ GT++RTRV E+ + GRN QGV +I + + V+ + Sbjct: 748 GKLVTLAHVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIR 807 Query: 841 EPVD 844 + + Sbjct: 808 KEDE 811 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 91/208 (43%), Gaps = 8/208 (3%) Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 + + G +K +++Y G A ++ D + + + D ++ + G+ Sbjct: 610 FIFATKSGVIKKSLITDYANITSA--GLIAINLQPGDELIGVDIQQDGDDVVLATKNGQA 667 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 + + + R +G V + L + + + ++ V +E ++ + G K+T Sbjct: 668 MRFEATLVRDTGRATQG---VIGIRLREGDEVVSMALVPGNDEEGELLAISECGLGKRTK 724 Query: 660 LTEFNRLRTAGKVAIKLVDGDE---LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 ++++ G I L D+ L+ + +G +E+M+ + +G V+R + VR G Sbjct: 725 VSDYPSKGRGGLGVITLDVTDKTGKLVTLAHVAGNEELMVLTEKGTVIRTRVEEVRVTGR 784 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGDGAI 744 N GV+ I +G+ D+V+ R + + Sbjct: 785 NAQGVKVINIGDKDRVIDAFPIRKEDEL 812 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 14/220 (6%) Query: 646 VFMATANGTVKKTVLTEF--NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 V T G VK+T LT + + G KL + D GV + S D ++ F+ +G+V Sbjct: 503 VITMTRAGYVKRTNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRV 562 Query: 704 VRFKESSVRAMGCNTTGVRGIR-----LGEGDKVVSLIVPRG---DGAILTATQNGYGKR 755 K + G + G IR L + + + S++ G G+ + AT++G K+ Sbjct: 563 FHEKIYDLPEAGRDAKG-THIRNLLPGLRDDENIASVLSVSGFDQPGSFIFATKSGVIKK 621 Query: 756 TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV 815 + + +Y + + G+I+I + ++G D D +++ T G +R + + Sbjct: 622 SLITDYANIT--SAGLIAINLQP-GDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDT 678 Query: 816 GRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 GR TQGVI IR E + VV + V +E +L I Sbjct: 679 GRATQGVIGIRLREGDEVVSMALVPGNDEEGELLAISECG 718 >UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5P0_9BACT Length = 836 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 363/853 (42%), Positives = 523/853 (61%), Gaps = 38/853 (4%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D +T + EE+K SYLDYAMSVIVGRALPD RDGLKPV RR+LYAM LG N+ Sbjct: 6 DNLGRVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQP 65 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 YKKSARVVG+ +GKYHPHGDSA+Y+T+VR+AQ +S+RY LVDGQGNFGSIDGDSAAAMRY Sbjct: 66 YKKSARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRY 125 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R A+ ++AD++++TVD+ N+D + K P +P+ +PNLL+NGS+GIAVGMATN+ Sbjct: 126 TEARFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNM 185 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PHNL EV++ I D ++ LM +PGPDFPT II GR GI +AYRTGRGK+ + Sbjct: 186 APHNLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIMGREGILDAYRTGRGKIIL 245 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 R + VE +++ + +++ EIPY +NK LIE I + V+ K+++G+S +RDESD+ G+R Sbjct: 246 RGKCHVEQKSRS-KTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLR 304 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +V+E+ R+A E+V LYS+T LQ +FGI +AL +P +NLK ++ F+ +RR VV Sbjct: 305 LVVELTREADAELVQRQLYSRTSLQSTFGIINLALVDNKPVELNLKQLLETFLNYRRSVV 364 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT F L KA R HI+E L AL ID +I +IR A T +AK L+ Sbjct: 365 RRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLI----------- 413 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 G T+ QAQAILD+RLQ+LTGLE EKLL E +LL Sbjct: 414 -----------------------GELAFTDLQAQAILDMRLQRLTGLEREKLLAELAQLL 450 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQEDVV 540 I IL + L VI +EL +R +F D+RRTE++A + +LEDL+ +ED++ Sbjct: 451 ADIERYRSILDNPSVLDGVINDELGELRRKFADERRTELSAALPTEGDSLEDLLPEEDIL 510 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLS G+++ PL Y Q RGGKG+ A +K++D + ++ V +TH I F+SRGRV+ Sbjct: 511 VTLSKDGFLRRSPLENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVF 570 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +++ + +PE T+ +GR + + L DER+ A+ E + T G K+ Sbjct: 571 AIRGHMIPE-TKTGKGRAVSKFVSLTDDERVVAMRGTLEETATSHLLFITKRGIGKRMDA 629 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E L AG+ + L DGDE+ + T G +V+L +++ K ES R MG G Sbjct: 630 EELENLTRAGRRVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPMGRAARG 689 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+ ++L D++++ D +L ++ G GKRT E+P R + GV ++ + R Sbjct: 690 VKAMKLAPDDRIIAAWTVAPDENLLLVSETGIGKRTKPEEFPIHHRGSGGVQAMHLGART 749 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G + AV V D++ ++T+ G ++R S+I ++ R G I++R + + + + + Sbjct: 750 GRLAAAVGVASSDEVGLMTEKGRMIRLSASDIPLLSRTATGSIVLRLNDGDLLASVSVIP 809 Query: 841 EPVDEEDLDTIDG 853 P+ E L D Sbjct: 810 APMAPESLTDADP 822 >UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1UZ45_PELUB Length = 849 Score = 938 bits (2426), Expect = 0.0, Method: Composition-based stats. Identities = 378/854 (44%), Positives = 561/854 (65%), Gaps = 27/854 (3%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + I +++ +E+ SSYL YAMSVIV RALPDVRDGLKPVHRR+L+AM G DW+K ++ Sbjct: 9 DKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFR 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDVIGKYHPHGD +VYD +VRM Q FS+ LV GQGNFGSIDGD AAAMRYTE Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLAK++ L+ D+EK+T+++ NYD TEK P V+P + PNLLVNG+ GIAVGMAT+IPP Sbjct: 129 TRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPP 188 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+I+G LA I+++DI I+ LM+HIPGPDFPT +I G+ I+ Y GRG IR Sbjct: 189 HNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAGYNVGRGSFKIRG 248 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 VE K GRE +++ +PYQVNK+ L E+IA+LV+EK++EGI +RDES+++G+R+ Sbjct: 249 EISVEAQ-KNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 I+++ E + LY T ++ SFG N +A+ G+PKI +LK+ + F+ R +VV + Sbjct: 308 IDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICDLKEFLTNFLTFREDVVIK 367 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 +T F+L+KA DRAHIL L+V++ N+D II++IR + TP +AK +L+ W++ ++ Sbjct: 368 KTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKLI 427 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 D + LY L++ Q AIL+LRLQKLT L ++ E K+L D Sbjct: 428 SLVEDKKEK------------NLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADL 475 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I +I+ S L+ VI EEL+ ++E+F RRT+I + ++E+ I +E V++T++ Sbjct: 476 IKGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVIITVT 535 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 QGY+K LS + Q+RGGKGKS ++ED + + L NTH +L FS+ G VY +K Sbjct: 536 LQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKA 595 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLT 661 +++PE + ++G+ + N+LPL+ + I++I+P + E K + ATA G V+K L Sbjct: 596 WKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLE 655 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCNTTG 720 +F+ + +AGK+AIKL D+++GV++ + +VML + GK +RF+ +R G ++ G Sbjct: 656 DFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKG 715 Query: 721 VRGIRLGEGDKVVSLIVPRGDG----------AILTATQNGYGKRTAVAEYPTKSRATKG 770 ++GI L D++VSL + + +L+ T+NGYGK+T EY +R KG Sbjct: 716 IKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVTNRGGKG 775 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 +I I + RNG + + V + D +M+ T+ G ++R V EI GRNTQGV +I+ + D Sbjct: 776 IIGIVNSPRNGSICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGD 835 Query: 831 ENVVGLQRVAEPVD 844 E VV ++ + ++ Sbjct: 836 EKVVSAIKIDDNLE 849 Score = 88.8 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 101/244 (41%), Gaps = 24/244 (9%) Query: 619 IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIKL 676 I +L + +E I ++ + T G +K+ L+ + + GK I Sbjct: 513 IDAILNYDIEETI---------QKESVIITVTLQGYIKRGALSSVKQQKRGGKGKSGITT 563 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR---LGEGDKVV 733 D D ++ + V+ FS EG V + K + + G L + Sbjct: 564 RDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTTSKGKSLFNILPLKNHQSIS 623 Query: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787 S++ + + I+ AT G ++ ++ ++ + + A K I+IK+ + N +VG Sbjct: 624 SIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGK--IAIKL-DPNDKIVGVE 680 Query: 788 QVDDCDQIMMITDAGTLVRTRVSEISI-VGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 D +M+ T G +R ++ I GR+++G+ I + ++ +V L + ++ Sbjct: 681 ICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDEIVSLSITNKEKIKK 740 Query: 847 DLDT 850 D + Sbjct: 741 DTKS 744 >UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C0R046_BRAHW Length = 834 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 365/849 (42%), Positives = 536/849 (63%), Gaps = 38/849 (4%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 D+ + + ++IE EL+ SYL YAMSVIV RALPDVRDGLKPVHRR+LYAM +K Sbjct: 21 KDILKRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDK 80 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 YKKSA VG+V+ +YHPHGD+AVY T+VRMAQ FS+RY+LVDGQGNFGSID D AAMR Sbjct: 81 PYKKSAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMR 140 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE R+ + A E++ D+EKETV FV N+D + P V+P +P LLVNGS GIA+GMATN Sbjct: 141 YTEARMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATN 200 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 +PPHNL EV+N + YID +D I+ LM ++ GPDFPTA II G+ GI+EAY TG+G++ Sbjct: 201 MPPHNLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIYGKEGIKEAYTTGKGRIK 260 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDG 300 +RAR EVE + K RE I+V E+PY V K L EKIA+LVK+ ++EG++ +RDE S++ G Sbjct: 261 LRARLEVE-ETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAG 319 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R++IE+K+ ++VLN L+ T L+ +FGI +AL +G+PK++NLK++I FV HR E Sbjct: 320 IRLIIELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVE 379 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+T+RT ++L +A+ +AHILE L +A ANI+ +I +IR + A+T L+ Sbjct: 380 VITKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------- 432 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + L+E+QAQAILD+ L++LT LE K+ E ++ Sbjct: 433 ---------------------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQ 465 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQED 538 L + IA +L ++++ VI++EL+ + E++GD RR+EI N +I+ EDLI ED Sbjct: 466 LREFIAYCEDLLAHPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTEIDEEDLIHDED 525 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V V+++ QG++K P S Y Q RGG G + + E +I+ L VA+T D++ F+ RG+ Sbjct: 526 VAVSITTQGFIKRVPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGK 585 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + MKV+++P ++ ++G+ I +L L +E+IT+ V+EF+ + M T GT+KK Sbjct: 586 AFWMKVHEIPALSKISQGKSIKFILNLAPEEKITSYFTVSEFDPKQSIIMVTKMGTIKKM 645 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 L + G +A+ L + DEL+ V D+ ++ +A G +R E +R MG Sbjct: 646 ELKHLENAKKRGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKMGRAA 705 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GV+GI L + D VS +++ T+NG GKR + ++ K R KG I IK Sbjct: 706 AGVKGISLDDDDICVSGNAIHKGESLIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDN 765 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + G VV V D D+IM++T ++ + I +GRN +GV ++ ++ V L Sbjct: 766 KTGNVVSVKTVGDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAV 825 Query: 839 VAEPVDEED 847 V +E+ Sbjct: 826 VPADNEEKK 834 >UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0S912_LEPBA Length = 843 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 385/842 (45%), Positives = 545/842 (64%), Gaps = 39/842 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + PV IE+++K +YLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMN ++ Y KS Sbjct: 34 RVIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKS 93 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A++VG+VIG YHPHGDSAVY+T+VRMAQ FS+R L+DGQGNFGS+DGD+AAA RYTE R Sbjct: 94 AKIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEAR 153 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L K+A EL+ D+EK TV F N+D T + PDV+P PN+LVNGS+GIAVGMATNIPPHN Sbjct: 154 LTKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHN 213 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L E +N +A I + DI++ LM+ +PGPDFPT I G G+ +AY TG+G + IR++ Sbjct: 214 LKEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIGGEGLYQAYATGKGSIRIRSKV 273 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 ++ ++ GRE I++HEIPYQVNK ++EKI +LV EK +EGIS + D SD+ G+R+ I Sbjct: 274 DI-IENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIH 332 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 VK+DA +V+LN L+ TQLQVS+GI M+A+ +PKI +LK+I+ ++ HRREVV +RT Sbjct: 333 VKKDANAQVILNQLFKLTQLQVSYGITMLAILDNRPKIFSLKEILKSYAEHRREVVVKRT 392 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F+L KA+ RAHILE L +AL NID +I +IR + EA+++L+A Sbjct: 393 EFDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMAT------------- 439 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + L+E QA AIL++RLQ+LT LE +K++DE +++ IA Sbjct: 440 ---------------------FSLSELQADAILEMRLQRLTSLEVQKIIDELEQVRILIA 478 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD---INLEDLITQEDVVVTL 543 +L IL DR+ +I +EL V + FG+ R TEI+ S + N EDLI E+VVV L Sbjct: 479 DLEDILSKPDRVKSIICDELGKVSQSFGNTRTTEISLESLESSTFNAEDLIADEEVVVQL 538 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S ++K P+ + Q+RGGKG K EDF+ +L A THD+++ FS++GR + +K Sbjct: 539 SEDMFIKRLPMDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHDNLMLFSNKGRAFLLK 598 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 VY+LP AT+ ARG+ + ++ L DE IT++ F+E + M T G VKK L EF Sbjct: 599 VYELPIATKEARGKSLKAVINLNDDEIITSLFTFRNFDES-YLLMVTREGFVKKIQLDEF 657 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + +G +AI L DGDELI V +V + S G +R + +R+ G +GV Sbjct: 658 TNTKKSGIIAIGLRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRSQGRTASGVTA 717 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 ++L + D + + + + ++NG+GKRT E+ TK R KG+ +K+ E+NG Sbjct: 718 MKLEDDDSIAGITKVEPNTNLFCISENGFGKRTDFEEFSTKGRGGKGMTYLKIGEKNGRA 777 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 VG V + D++++IT +G +R V IS+VGR+ GV ++ T +++ V V E Sbjct: 778 VGISSVKEEDELLVITQSGMAIRVEVKTISMVGRSAMGVKVVNTKDEDFVKDFAVVRESD 837 Query: 844 DE 845 + Sbjct: 838 SD 839 >UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNA3_9BACT Length = 814 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 370/845 (43%), Positives = 530/845 (62%), Gaps = 39/845 (4%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 L +I + EE+K SYLDYAMSVIVGRALPD RDGLKPV RR+L+AM LG N++ Sbjct: 5 TLFGKIIRHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQS 64 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 YKKSARVVG+ +GKYHPHGDSA+YDT+VR+AQ FS+RY LVDGQGNFGSIDGDSAAAMRY Sbjct: 65 YKKSARVVGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRY 124 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL ++ ++ D++++TV++ N+D + K P V+P+++PNLLVNGS+GIAVGMATN+ Sbjct: 125 TEARLQELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNM 184 Query: 183 PPHNLTEVINGCLAYID-DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 PPHNL EV++ I+ + LM +PGPDFPT +I G+ GI +AYRTGRG++ Sbjct: 185 PPHNLGEVVDAICYLIEAGDQADFGELMARMPGPDFPTGGVILGKDGIIDAYRTGRGRLV 244 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 ++ VE + K G+ +++ EIPY VNK +IE IA V+ K ++G++ +RDESD+ G+ Sbjct: 245 VQGLVHVE-EGKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGL 303 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 R+V+EV RD ++V+ LY ++QLQ +FG+ +AL G+P ++L D++ F+ HRR V Sbjct: 304 RVVLEVSRDVDPDLVIRQLYRRSQLQNTFGVINLALVDGRPVELSLTDMLNVFLGHRRTV 363 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 V RRT F L+KA RAHILE L AL ID +I LIR + A AK LVA Sbjct: 364 VRRRTEFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAE-------- 415 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 +E QAQAILD++LQ+LTGLE +KL DE+ L Sbjct: 416 --------------------------LDFSEIQAQAILDMKLQRLTGLERDKLNDEFAGL 449 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN-SADINLEDLITQEDVV 540 L I IL S L VI EEL ++ ++GD RRT+I D + EDLI +ED+V Sbjct: 450 LADIQRYRSILDSEKVLDGVIVEELVALKGKYGDDRRTKIVDRVGQDCSDEDLIPREDIV 509 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V LS GY++ PL +Y Q +GGKG+ AR++EED + + V+ THD I F+++GRV+ Sbjct: 510 VMLSRDGYLRRVPLEDYSLQAKGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRVF 569 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++K Y + E +R +G+ I + LE DER+ ++ +E +F T G K+ Sbjct: 570 AIKGYIISE-SRTGKGKLIGKYISLENDERVVSM-KTRRGQESGFLFFLTRRGIAKRLPS 627 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +E + L AG+ + L +GDE+ + TSG D+++L SA G+ +R E R MG + G Sbjct: 628 SELDNLTRAGRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPMGRSARG 687 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+ +RL +GD+++S V D + ++ G GKRT ++ R G+ + + R Sbjct: 688 VKAMRLKDGDRIISGEVVTEDRRPILVSETGIGKRTNFEDFTVHHRGGGGMKVMSINSRT 747 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 GL+ A V + D+I+++T G ++R EI ++GR G I++R ++VV L V Sbjct: 748 GLLAAATSVSEDDEIIVMTAKGRMIRVAAKEIRVLGRTAAGSIVVRLDGGDSVVDLSVVN 807 Query: 841 EPVDE 845 ++ Sbjct: 808 MDGED 812 >UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GYRA_MYCPN Length = 839 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 377/860 (43%), Positives = 532/860 (61%), Gaps = 43/860 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I +++ EL+ S+++YAMSVIV RALPD RDGLKPVHRRVLY G ++ +KKSA Sbjct: 20 IKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRPFKKSA 79 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+ K+HPHGD A+YDT+ RMAQ FSLRY+L+DG GNFGSIDGD AA RYTE RL Sbjct: 80 RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARL 139 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +K+A EL+ D++K+TVDFV NYDG E+ P V+P PNLL NGSSGIAVGM+T+IP HNL Sbjct: 140 SKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNL 199 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 +E+I G + ID+ D +I L+ I GPDFPT A I +GIE + TG+G V IR++ Sbjct: 200 SELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVS 259 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E R ++V EIPY VNK LIEKI ELVK + + GI+ +RDES ++G+R+VIEV Sbjct: 260 IE--QLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIRLVIEV 317 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KRD V EV+LN L+ T+LQV F +NM+AL G PK++N+K + ++ H+ +V+ R+T Sbjct: 318 KRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVLIRKTQ 377 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F L+K ++R HIL L +A NID +I +I+ + A AL Sbjct: 378 FNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER-------------- 423 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + L E QA+A+LD+RL+ L+ LE KL E +EL I Sbjct: 424 --------------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEF 463 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITAN-SADINLEDLITQEDVVVTLSHQ 546 ++L +++I+E+L + EQFGD RR+EI S DI+ EDLITQE+VV+T+S Sbjct: 464 CQQVLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTN 523 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K + Y Q RGG G +D I +LLV +TH +L F+ +G+VY ++ +Q Sbjct: 524 GYLKRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQ 583 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P R +G P VNL+ +++DE+I A++ V +++ G F T NGT+K+T L+EF + Sbjct: 584 IPPGFRTNKGIPAVNLIKIDKDEKICALISVNDYQNG-YFFFCTKNGTIKRTSLSEFANI 642 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 + GK AI + D L V TSG+D++ + S G VVRF E +VR + GV GI L Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINL 702 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 + + V L +L+ QNG GK T++ +Y R KGV +++VT + G VV Sbjct: 703 NQCEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTGPVVTT 762 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 V + ++MI+ AG +VR + ++S +NT GV LI+ E E L+ V EE Sbjct: 763 TTVFGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKER---LETVTIFKKEE 819 Query: 847 DLDTIDGSAAEGDDEIAPEV 866 + T +A E DD + ++ Sbjct: 820 AIKTT--TATETDDVGSKQI 837 >UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6BPL3_9RICK Length = 859 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 372/861 (43%), Positives = 559/861 (64%), Gaps = 37/861 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I +++ +E+ SSYL YAMSVIV RALPD+RDGLKPVHRR+LYAM G DW+K ++ Sbjct: 9 DNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQFR 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDVIGKYHPHGD +VYD +VRM Q FS+ LV GQGNFGSIDGD AAAMRYTE Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL+K++ L+ D+EK T+ F NYD TEK P V+P + PNLLVNG+ GIAVGMAT+IPP Sbjct: 129 TRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIPP 188 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+ING LA ID++DI I LM+++PGPDFPT +I G+ I+ Y GRG IR Sbjct: 189 HNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVIIGKDIIKHGYNNGRGSFKIRG 248 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 VE K GRE +++ IPYQVNK+ L E+IA+LV+EK++EGI +RDES+++G+R+ Sbjct: 249 EVSVE-SLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 I+++ E + LY TQ++ SFG N +A+ G+PK LKD ++ F+ R ++V + Sbjct: 308 IDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDFLSNFLSFREDIVIK 367 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 +T F+L+KA +RAHIL L+V++ N+D II++IR + TP +AK A++ W++ ++ Sbjct: 368 KTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQKLI 427 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + GLY L+E Q AIL+LRLQKLT L ++ E K+L + Sbjct: 428 SLVEGKKGK------------GLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAEL 475 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 IA +I+ S L++VI EEL+ ++E+F RRT+I + ++E+ I ++ V++T++ Sbjct: 476 IARYKKIISSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVIITVT 535 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 QGY+K L + Q+RGGKGKS +++D + + L NTH +L FS+ G VY +K Sbjct: 536 LQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKA 595 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLT 661 +++PE + ++G+ + N+LPL+ + I++I+P+ E E +K + ATA G V+K L Sbjct: 596 WKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLE 655 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCNTTG 720 +F+ + +GK+A+KL + D+++GV + + +++L + GK +RF+ +R G ++ G Sbjct: 656 DFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKGRSSKG 715 Query: 721 VRGIRLGEGDKVVSLIVPRGD--------------------GAILTATQNGYGKRTAVAE 760 ++GI L D++VSL V D +L+ ++NGYGK+T+ + Sbjct: 716 IKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFVLSISENGYGKKTSHID 775 Query: 761 YPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQ 820 Y +R KG+I I + RNG + + V + D+I++ T+ G ++R V EI GRNTQ Sbjct: 776 YRVTNRGGKGIIGIVNSPRNGNITSSFPVFEGDEILISTNKGRVIRVAVKEIRTAGRNTQ 835 Query: 821 GVILIRTAEDENVVGLQRVAE 841 GV +I+ + +E VV ++ + Sbjct: 836 GVRIIKLSGEEKVVSAIKIDD 856 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 26/223 (11%) Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 ++ + QG V+ L ++ + GK A ++ D I + + I+ + G+ Sbjct: 640 IIFATAQGKVRKNSLEDFSSINASGK--IAMKLDNNDKIVGVKICQDDQDIILSTKFGKC 697 Query: 600 YSMKVYQLPE-ATRGARGRPIVNLLPLEQDERITAILPVTEFE----------------- 641 + +L R ++G + + L +++I ++ + + Sbjct: 698 IRFEAKKLRVFKGRSSKG---IKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKA 754 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD---GDELIGVDLTSGEDEVMLFS 698 + V + NG KKT ++ GK I +V+ + DE+++ + Sbjct: 755 KEKFVLSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRNGNITSSFPVFEGDEILIST 814 Query: 699 AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 +G+V+R +R G NT GVR I+L +KVVS I + Sbjct: 815 NKGRVIRVAVKEIRTAGRNTQGVRIIKLSGEEKVVSAIKIDDN 857 Score = 79.2 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 101/251 (40%), Gaps = 24/251 (9%) Query: 619 IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIKL 676 I +L + +E I ++ + T G +K+ L + + GK I Sbjct: 513 IDAVLNYDIEETI---------QKQSVIITVTLQGYIKRGSLDGVKQQKRGGKGKSGITT 563 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR---LGEGDKVV 733 D D ++ + V+ FS EG V + K + ++ G L + Sbjct: 564 RDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKIPEGSSSSKGKSLFNILPLKSHQSIS 623 Query: 734 SLIVPRGDG------AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787 S++ + I+ AT G ++ ++ ++ + + + K I++K+ + N +VG Sbjct: 624 SIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFSSINASGK--IAMKL-DNNDKIVGVK 680 Query: 788 QVDDCDQIMMITDAGTLVRTRVSEISI-VGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 D I++ T G +R ++ + GR+++G+ I A ++ +V L + ++ Sbjct: 681 ICQDDQDIILSTKFGKCIRFEAKKLRVFKGRSSKGIKGIELAPNDQIVSLSVIDNDKTKK 740 Query: 847 DLDTIDGSAAE 857 + +E Sbjct: 741 NGKKSKDDKSE 751 >UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=GYRA_FIBSS Length = 903 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 394/901 (43%), Positives = 552/901 (61%), Gaps = 90/901 (9%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E++++ YL Y+MSVIV RALPD RDG KPVHRRV+Y+M+ LG NK KSAR+VGD Sbjct: 15 VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 VIGKYHPHGD AVYDT+ RMAQ FSLRY LV GQGNFGSIDGDS AAMRYTE ++ + Sbjct: 75 VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 134 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 ++ DLEKETVD NYD + + P V+P+ +PN++VNG+SGIAVGMATN+ PHNL EV Sbjct: 135 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 194 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 A ++ D++ E LME++ GPDFPT AI+ GR GI EAY TG G+V +RAR E+E DA Sbjct: 195 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 254 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 K G+ IIV EIPY VNKA L +KIA+LV++KR++GI+ +RDES +D +RIVIE++RDAV Sbjct: 255 K-GKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD-IRIVIELRRDAV 312 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 GEVVLNNL+ TQLQ +F I +AL + PK++ LKD++ ++ HR +V+TR T F+L+K Sbjct: 313 GEVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKK 372 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 A R HI+E L +A NID ++++IR + T AK +L Sbjct: 373 AAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR------------------- 413 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 + L E Q+QAI+D+RL +L GL EKL EY EL+ +A+L IL Sbjct: 414 ---------------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDIL 458 Query: 493 GSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQ 552 +R + ++ ++L+ V +++GD+RRT I D + EDLI +E+ V+TLS +GY++ Sbjct: 459 EKRERRVAIMLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRL 518 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 P+ ++AQ RGGKG A +K+ED ++++ A+TH ++L F+++GRVY KVY+LPE R Sbjct: 519 PIDTFKAQNRGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGAR 578 Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 +GRPIVN + L + E++ AI+PV +F + AT G + K LT F+R R AG Sbjct: 579 NGKGRPIVNFVALTEGEKVQAIVPVRKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVN 638 Query: 673 AIKLVDGDELIGVDLTS------------------------------------------- 689 AI L + DEL+ V L Sbjct: 639 AISLDEDDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDA 698 Query: 690 --------GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 +D +M+ + G+ V F S RAMG T GV+GI L EGD+V+SL+ + Sbjct: 699 EDFANRPIPKDLLMIATKNGQAVTFPISCFRAMGRGTHGVKGITLAEGDEVISLLWLKAG 758 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 ILT T+ GYGKR+ Y R +KGV ++ VT++ G V V D +++ + Sbjct: 759 NKILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKD 818 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDE 861 G ++R + ++I + GRN QGV I + + V + ED++ A E D+ Sbjct: 819 GQVIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSV---EDIEQDSADAKETFDK 875 Query: 862 I 862 + Sbjct: 876 V 876 >UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepID=Q2GCH4_NEOSM Length = 869 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 394/878 (44%), Positives = 557/878 (63%), Gaps = 43/878 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I PVN+E+ELKSSYL YAMSVI+ RA+PDVRDGLKPVHRR+LY+MN L WNK Y+KSA Sbjct: 4 IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RV+G+VIGKYHPHGDSA+YD +VRMAQ FSL L+DGQGNFGSIDGD AAAMRYTE+RL Sbjct: 64 RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 I+ L+ DL + +VDF NYD +E P V+P K PN+LVNG++G+AVGMATN+P HNL Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 +EVI C Y+++ +++ + L++ I GPDFPT +I G GI+ ++ +GRG + IR++ Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSKTH 243 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 E + IIV E+PYQVNKA+LIE IA LVKEKR++ IS LRDES+K+G+R+VIE+ Sbjct: 244 FEETEAG--KAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIEL 301 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KR A EVVLN L+ TQLQ S+ NMV L + +P +M+L+DI+AAF+ HR+EV++RRT Sbjct: 302 KRGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRTE 361 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F L KAR++A++L AL VA+ NID ++ +++ + A AL A W + +L Sbjct: 362 FRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELL--- 418 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + + Y L+ Q++AIL++++Q++T E +L+ E +D + E Sbjct: 419 -------VETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKE 471 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI-NLEDLITQEDVVVTLSHQ 546 ILGS L VI EL ++ ++ R++ I N + EDLI +E VVVT ++ Sbjct: 472 CASILGSEAVLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYS 531 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K +S Y QRRGGKG+ A IK ED + ++ V +THD IL FSSRG+VY +K Y+ Sbjct: 532 GYIKRVHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYK 591 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 LP +RGR +VN+ L DE IT+ILP+ + + TA G VK+ +++F + Sbjct: 592 LPIGEPQSRGRALVNIFDLADDESITSILPLKS-SDAENLIFLTAQGKVKRNSMSDFAYV 650 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIR 725 GKVAI+L D D LI V ED V + + +GK +RF +R + ++ GV+ I Sbjct: 651 PANGKVAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAIT 710 Query: 726 LGEGDKVVSLIVPR---------------------------GDGAILTATQNGYGKRTAV 758 LG+ D +SL + + +LT T+NGYGK T+ Sbjct: 711 LGKDDNAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKITSS 770 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRN 818 EY +R G+I+I +ERNG VV + +V + IM++T+ G ++R + I ++GRN Sbjct: 771 YEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVTNRGQVIRIEANNIPVLGRN 830 Query: 819 TQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 TQGV L +E V + V E V+++D +T + Sbjct: 831 TQGVRLFSIRAEERVASVTEV-EEVEDDDSETTENCQD 867 >UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y742_9BACT Length = 871 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 371/840 (44%), Positives = 523/840 (62%), Gaps = 42/840 (5%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + P + E+K SYLDYAMSVIVGRALPD RDGLKPV RRVLY M LG N+AYKKS Sbjct: 8 RVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKS 67 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVG+V+GKYHPHGD+++YDT+VR+AQP++LRY LVDGQGNFGS+DGD AAAMRYTE R Sbjct: 68 ARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAMRYTEAR 127 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A++ ++ D++++TVD+ N+D + K P +P+ +PNLLVNGS+GIAVGMATN+PPHN Sbjct: 128 FAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHN 187 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+ ID + + LM ++PGPDFPT II GR GI +AYRTGRGK+ +R R Sbjct: 188 LGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIMGREGIVDAYRTGRGKIIVRGRC 247 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 VE + R ++++ EIPY VNK LIE IA+ V+E ++G+S LRDESD+ G+RIV++ Sbjct: 248 VVEEGKR--RTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGLRIVLD 305 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 + RD E+V LY++T +Q +FG+ + L +P + LK ++ F+ +RR+VV RRT Sbjct: 306 LNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVELGLKSMLEVFLDYRRDVVRRRT 365 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F L KA++R HI+E L AL ID +I +IR A T EA L Sbjct: 366 AFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQ------------- 412 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 +E+QAQAILD+RLQ+LTGLE +KL E +LL IA Sbjct: 413 ---------------------LQFSEKQAQAILDMRLQRLTGLERDKLTAEMAQLLADIA 451 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEIT--ANSADINLEDLITQEDVVVTLS 544 IL A L VIR+EL +R +FGDKRRTEI S + EDL+ +E++V+TLS Sbjct: 452 RYQEILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTSDSYEDLMPEENIVITLS 511 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GY++ L +Y Q RGGKG+ A + EED + ++V TH+ +L F+SRGRV+++K Sbjct: 512 KDGYLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKG 571 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK-VFMATANGTVKKTVLTEF 663 + +PE G +GR + + L + E + IL F + V + T G K+ +E Sbjct: 572 HMVPETKSG-KGRKVEQFISLSEGETVVEIL--GRFPDNCSTVVLITRRGIAKRMDKSEL 628 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 L AG+ + L DGD++ + T+G D++ L SA G+ +R E +R MG + GV+ Sbjct: 629 QNLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTMGRSARGVKA 688 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 ++LG+ D+++S V GD IL +Q G GK T+ E+ RAT G ++++ +R G + Sbjct: 689 MKLGKDDEIISCEVIAGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDRTGRL 748 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 A V D++ ++T G ++R V I +GR+ G ILIR + V + + + Sbjct: 749 AVANTVFPDDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKED 808 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 11/210 (5%) Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 VV ++ +G K SE + R G+ + + D I R+ N D + S+ G Sbjct: 609 STVVLITRRGIAKRMDKSELQNLTRA--GRQIMTLDDGDDIARIRCTNGLDDLFLVSAMG 666 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 R + ++ R ARG V + L +D+ I + + ++ + + G K Sbjct: 667 RGLRISEDEIRTMGRSARG---VKAMKLGKDDEIISCEVIA---GDSRILLVSQRGIGKI 720 Query: 658 TVLTEFNR--LRTAGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 T EF+ T G+ A+++ D L + +DEV L +A G ++R S+ + Sbjct: 721 TSYDEFSVHHRATGGQRAMRIGDRTGRLAVANTVFPDDEVALMTAGGNIIRLAVDSIPQL 780 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGAI 744 G + G IR GD+V ++ + + + Sbjct: 781 GRDAAGSILIRPENGDEVANVSLIHKEDLV 810 >UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondrial n=14 Tax=cellular organisms RepID=GYRA_NICBE Length = 935 Score = 922 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 364/883 (41%), Positives = 527/883 (59%), Gaps = 67/883 (7%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + +E +Y+ YAMSV++GRALPDVRDGLKPVHRR+LYAM+ LG K YKK Sbjct: 88 ERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYKK 147 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLR L+ G GNFGSID D AAMRYTE Sbjct: 148 CARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPPAAMRYTEC 207 Query: 126 RLAKIAHELM-ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL + ++ ADLE+ TVDFV N+D ++K P ++P ++PNLL+NG+SGIAVGMATNIPP Sbjct: 208 RLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATNIPP 267 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+++ A I + + +++ L+E++PGPDFPT II G GI EA+RTGRG+V IR Sbjct: 268 HNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAFRTGRGRVVIRG 327 Query: 245 RAEVEV-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + ++E+ D+KT R II+ EIPYQ NKA L+EKIA+LV+ K +EG+S +RDESD+ GMRI Sbjct: 328 KTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSGMRI 387 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 VIE+KR + +VLNNLY T LQ SF NMV + +GQPK+M LK+++ AF+ R VV Sbjct: 388 VIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQAFLDFRCSVVE 447 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR F+L +A++R HI+E + V L N+D +I IR Sbjct: 448 RRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRK------------------------ 483 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + L+E+QA+AILD+ L++LT LE K ++E K L Sbjct: 484 ----------ASSNALAAASLRKEFELSEKQAEAILDISLRRLTALERNKFVEEGKSLRT 533 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA-NSADINLEDLITQEDVVVT 542 QI++L +L S +++++I EE ++ +F + RR+ + +S D+ D+I E++++ Sbjct: 534 QISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEMLLA 593 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 +S +GYVK + Q RG GKS +++ D + LV HD +L FS +G VYS Sbjct: 594 ISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSS 653 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 Y++PE +R A G P+V +L L ERIT+I+PV+EF + M T NG +KK L Sbjct: 654 PAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNY 713 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 F +R G +AI+LV DEL V S D V + S G V+ +++RA+G NT G Sbjct: 714 FASIRCTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRALGRNTRGSV 773 Query: 723 GIRLGEGDKVVSLIVPRG---------------------DGAILTATQNGYGKRTAVAEY 761 +RL EGDKV S+ + +L +++GYGKR V+ + Sbjct: 774 AMRLKEGDKVASMDIIPDALQKELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRF 833 Query: 762 PTKSRATKGVISIKVTERNGLVVGAVQV--------DDCDQIMMITDAGTLVRTRVSEIS 813 T G+ K + + + V + +Q+++++ +GT+ R +V +IS Sbjct: 834 RTSPLNRVGLFGYKFSSEDC-LAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDIS 892 Query: 814 IVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 I R +GVIL+R + ++ + + + AA Sbjct: 893 IQSRYARGVILMRLEHAGKIQSASLISAADADPEDEDATAVAA 935 >UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVF2_STRM9 Length = 870 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 401/852 (47%), Positives = 563/852 (66%), Gaps = 56/852 (6%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + IE+E+K+SYLDY+MSVIV RALPDVRDGLKPVHRR+LYAM+ L + N YKKSAR+V Sbjct: 43 IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKSARLV 102 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 G+V+GKYHPHGDSAVY+++VRMAQ F+ RYMLVDG GNFGSIDGDSAAAMRYTE R++KI Sbjct: 103 GEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDGDSAAAMRYTEARMSKI 162 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ D+ K+T+D+ N+D + P V+P ++PNLL+NG++GIAVGMATNIPPHNL E+ Sbjct: 163 AEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHNLGEL 222 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 +G +A ID+ DISI+ L+ HI GPDFPT II G+ GI AY+TGRGKV + A+ E+ Sbjct: 223 SDGIIALIDNRDISIDELITHIKGPDFPTGGIIYGKSGIYSAYKTGRGKVRVSAKTEIIT 282 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 D K GR++I++ E+PYQVNKA LI++I ELVK+K + GIS L D S+ +G+RIVI++K+ Sbjct: 283 DKK-GRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVIDIKKG 341 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 E+VLN L T LQ +FGI M+AL + PKI+NLK+I+ ++ HR +V+TR+TIF+L Sbjct: 342 EEAEIVLNKLLKFTDLQTTFGIIMLALVNNAPKILNLKEILEKYLEHRYDVITRKTIFDL 401 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 KA+DRAHILE L AL +ID II +IR + T A AK +L+A Sbjct: 402 NKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAK----------------- 444 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 + TE Q AILD+RL +LTGL E++ EY +L+ I +L Sbjct: 445 -----------------FEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLMLFITDLED 487 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 IL +R +I+EE+ +++++GD RRT I + +IN+EDLI EDV+VT++ +GY K Sbjct: 488 ILAKDERKYAIIKEEVLELKQKYGDARRTSIENDRYEINIEDLIKNEDVIVTITKRGYAK 547 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 L Y+AQ+RGGKG S E+D + L A T D ++ FS +G+VYS+KVY++PE Sbjct: 548 RMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEV 607 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTVLTEFNRLRTA 669 ++ ARG+ I N++ L+++E+I+ I+PV E E + + T NG KKT ++EF + Sbjct: 608 SKQARGKLIGNIIELDENEKISVIIPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRN 667 Query: 670 GKVAIKLVDG-DELIGVDLTSGE--DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 GK+AI D DE+ V +TSG DE+ + + G VRFKE +R+MG GVR I+L Sbjct: 668 GKIAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSMGRTAAGVRAIKL 727 Query: 727 GEGDKVVSLIVPRGDGA-----ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER-- 779 D+VVS V D +L+ T G GK+T ++EY R KGV + + R Sbjct: 728 NSNDEVVSADVIYTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSK 787 Query: 780 ----NGLVVGAVQVDDCD------QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 + VV + +D D +++ I+ GT++R ++ ++ +VGRN++GV + Sbjct: 788 EESEHHYVVYSTIIDPSDENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKY 847 Query: 830 DENVVGLQRVAE 841 E +V RVA Sbjct: 848 KEYLVSADRVAA 859 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVA--IKLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 + T G K+ L + + GK ++ D L + D +M+FS +GKV Sbjct: 537 IVTITKRGYAKRMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKV 596 Query: 704 VRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVP-----RGDGAILTATQNGYGKR 755 K + + G I L E +K +S+I+P + ++ T+NG K+ Sbjct: 597 YSIKVYEIPEVSKQARGKLIGNIIELDENEK-ISVIIPVDEIENDNRDLIFITRNGIAKK 655 Query: 756 TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV 815 T ++E+ T +R K IS K E VG + D+I + T G VR + +I + Sbjct: 656 TKISEFKTINRNGKIAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSM 715 Query: 816 GRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 GR GV I+ ++ VV + + +++ + ++ Sbjct: 716 GRTAAGVRAIKLNSNDEVVSADVIYTDNNVDEMSVLSVTS 755 >UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepID=GYRA_THEMA Length = 804 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 363/843 (43%), Positives = 536/843 (63%), Gaps = 44/843 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + +E+EL SYL Y+MSVIVGRA+PDVRDGLKPV RR+LY M LG N Sbjct: 1 MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VG+V+GKYHPHGD+ VYD +VRMAQPF++RY L++GQGNFGSID D AAMRYT Sbjct: 61 KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL ++A E++ D+EK TV+ +DN+DGT K P+V+P+K+PNL++NG+SGIAVGMATNIP Sbjct: 121 EARLTRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL+E ++ + ID + ++E LM+ I GPDFPT A++ +++ Y GRG++ +R Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVR 240 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + VE + R I++ EIPY V+KA LIE+IA++ K+ I +RDESDK GMRI Sbjct: 241 GKVHVEDGKRVKR--IVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVV 362 VIE+ +DA EV++NNLY +T LQ F + M+ + H +P++MNLK ++ AF+ HR EV+ Sbjct: 299 VIEIPKDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RR +E + RAH++E L A I +++++R++ A+ +L+ Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMET--------- 409 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 +TE+QA+AILD+RL +LT LE E L +EY +L+ Sbjct: 410 -------------------------LEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLV 444 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 +I+E+ IL +++ E++++E +++Q+GD RRTE+T S + N E+LI +EDVV+T Sbjct: 445 RKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVIT 504 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 LSH+GY+K PL+ Y +Q+RGGKG + +++ E+D ++ ++VA L ++ GR Y + Sbjct: 505 LSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVL 564 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 K YQL R RGR I L LE E+I A+ + EG + +AT +G +K+T L E Sbjct: 565 KNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG--EGRDLVIATKSGKIKRTALKE 622 Query: 663 FNR-LRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRAMGCNTTG 720 F G AIK+ GDE++ + + E E +++ + G +RF S VR MG N G Sbjct: 623 FENATSNRGVRAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAG 682 Query: 721 VRGIRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 V+ I+L GD+VVS+ V P +G ILT T+ G+GKRT V Y + R G+ +I Sbjct: 683 VQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVN 742 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + G VV V ++I+++T G ++R VSEI ++GR T+GV LI D+ + + Sbjct: 743 KTGYVVAVRYVRGDEEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAV 801 Query: 839 VAE 841 V + Sbjct: 802 VKD 804 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 7/220 (3%) Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI--KLVDGDELIGVDLTSGEDEVMLFSA 699 E V + G +K T L + + GK KL + DE+ V + + + Sbjct: 498 EEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITN 557 Query: 700 EGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRGDGAILTA-TQNGYGKR 755 G+ K + G NT G + L + +K+V+L G+G L T++G KR Sbjct: 558 LGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNGEGRDLVIATKSGKIKR 617 Query: 756 TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV 815 TA+ E+ + + +GV +IK+ + +V V + + +++ T G +R VS++ + Sbjct: 618 TALKEFENAT-SNRGVRAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM 676 Query: 816 GRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 GRN GV I+ + VV + + + E L + Sbjct: 677 GRNAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGF 716 >UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytoplasma RepID=Q2NJM2_AYWBP Length = 835 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 370/853 (43%), Positives = 553/853 (64%), Gaps = 44/853 (5%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I VN+ EE+K S+L YAMSVIV RALPD++DGLKPV RR+LY+M LG + +YKK+ Sbjct: 21 KIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKA 80 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDG GNFGSIDGD AAAMRYTE++ Sbjct: 81 ARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVK 140 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 +AK+A EL+ +++KET+DFVDNYDGTEK P V+PT +PNLL+NG++GIAVGMAT IP HN Sbjct: 141 MAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHN 200 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+G + YI+++DISI+ LM+HI GPDFPT + G + ++ AY TG+G V ++A++ Sbjct: 201 LGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGLQSLKSAYHTGQGAVILKAKS 260 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 V + G+ +IIV EIPYQV K LIEKIA LVK K VEGI+ LRDES + GM+IVIE Sbjct: 261 HVLEE--RGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKGMKIVIE 318 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KRDA +++LN LY +QL++SFGINMVAL P++++LK I+ AF R EV+ R+ Sbjct: 319 LKRDANAKIILNKLYKHSQLRISFGINMVALVGKTPQLVSLKQILEAFFNFRIEVINRQK 378 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL+KA R H++ AL L +I+ I+LI+ + EA+ L+ Sbjct: 379 SFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQK------------- 425 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Y E Q++AIL++ LQ+L+ E +KL+ E K L +I Sbjct: 426 ---------------------YNFDEIQSKAILEMSLQRLSNQETQKLITEEKNLTQEIL 464 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDVVVTLSH 545 E I+ S + ++ +EL +++++ D R+T + + EDLI ++ +++T+++ Sbjct: 465 ECKSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLIEKKPIIITITN 524 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 +GY+K + Y+ Q+RGG+G S +I EEDFI+ L + +THD+ L F+++G+VY +K Y Sbjct: 525 KGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGY 584 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFN 664 ++P R ++G +VN LP E+DE +T+ + F++ +F AT G VKKT L E++ Sbjct: 585 EIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQDYLFFATKKGIVKKTPLKEYS 644 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 + G +AI+L + DE++ V T+G ++L S G + F E+ ++++ N+ GV G+ Sbjct: 645 HISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKIKSISRNSMGVIGM 704 Query: 725 RLGEGDKVVSLI---VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 RLG + +V V + IL T+NG+GK T V +Y ++R+ KG +IKV ++ G Sbjct: 705 RLGSDEFLVGAALFDVDSKEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVNDQKG 764 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV-GRNTQGVILIRTAEDENVVGLQRVA 840 ++ V D +++ +D G +VR + +I+ + TQG +I+ V + V Sbjct: 765 RLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAVSVAVVK 824 Query: 841 EPVDEEDLDTIDG 853 + V D+D ++ Sbjct: 825 KEV--LDIDVVEN 835 >UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C6CYI7_PAESJ Length = 817 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 338/848 (39%), Positives = 507/848 (59%), Gaps = 48/848 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + P +EE + + Y+ +I RA+PDVRDGLKPV RR+LYAM N +K Y Sbjct: 3 MLEQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPY 62 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VGDV+G YHPHGDS++Y+ +VRMAQP+ + ++L+DG GN+GS+D D AAAMRYT Sbjct: 63 RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYT 122 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ IA E++ D++K TV F DN+D T K P V+P++ PNLLVNG+SGI+ G AT IP Sbjct: 123 EARLSPIAMEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIP 182 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PH+L E I+ C+A + ++++E LM + GPDFPT II G GI EAY TG+G++YIR Sbjct: 183 PHSLRETIDACIAVMARPEMTVEELMGIVKGPDFPTGGIIMGEEGIREAYTTGKGRIYIR 242 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 ++ E+E D + GR+ I + EIPYQV K+RL+ + + EK+VEGIS +RDES ++G+RI Sbjct: 243 SKVEIE-DVRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRI 301 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+E+K++A +L L +T LQV++ NMVA+ + P+ + +K I+ A++ H++EVVT Sbjct: 302 VVELKKEADANGILAYLLKKTDLQVTYNFNMVAIVNKAPQQLGIKQILNAYINHQKEVVT 361 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RT +EL KA +RAH++E L AL +D +I I+ + A+A+ LVA Sbjct: 362 HRTQYELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAK---------- 411 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 Y +E+QA AIL L+L +LT LE L E+KE Sbjct: 412 ------------------------YGFSERQADAILTLQLYRLTNLEITSLEKEWKETQK 447 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLITQEDVVV 541 +IA L IL S +L+ VI++EL +RE++G RR+ I +NLE ++ EDV+V Sbjct: 448 KIAYLRSILESEKKLLGVIKDELTEIREKYGIDRRSSIRGEVEELKVNLEVMVQSEDVIV 507 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 TLS +GY+K + + R G A +KE D I + NT D++L F+ +G+ Y Sbjct: 508 TLSEEGYMKRTSMLSF---TRSGGDLQTAGVKEGDAISSVYEVNTIDNLLLFTRKGQYYM 564 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTVL 660 + V+Q+PE G +VN++P+ +D+ I AI+PV +F G + T VK+T L Sbjct: 565 LPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAIIPVKDFNLPGASLVFVTKRAQVKRTEL 624 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E+ R+ A K+ +GDE+I V L+ G +++L S G +RF E V AMG G Sbjct: 625 KEYMTTRSTAIAAAKVAEGDEVIRVTLSEGTKQLLLVSKLGMSIRFSEQEVNAMGRVAAG 684 Query: 721 VRGIRLGEGDKVVSL-IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE- 778 VRG++L E D++++ V +G +L T GY KRT + +YP + R KGV + + E Sbjct: 685 VRGMQLREDDELIAAEWVADDEGEVLVVTDLGYAKRTLLLDYPLQGRGGKGVQTFEFKEG 744 Query: 779 -----RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 +V A+ + I+ +T G + + I R + G IL+ +++ + Sbjct: 745 KRVKPNGSALVAALYCKEELGIIALTSQGAQLAASSEKAPIEDRKSIGRILLPMEKNDVI 804 Query: 834 VGLQRVAE 841 + E Sbjct: 805 TTIFVRPE 812 Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 89/213 (41%), Gaps = 13/213 (6%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAG-KVAIKLVDGDELIGVDLTSGEDEVMLFSA 699 + + + G +K+T + F R+ G + +GD + V + D ++LF+ Sbjct: 501 QSEDVIVTLSEEGYMKRTSMLSF--TRSGGDLQTAGVKEGDAISSVYEVNTIDNLLLFTR 558 Query: 700 EGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRG----DGAILTATQNGY 752 +G+ + TG V + + + D +V++I + +++ T+ Sbjct: 559 KGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAIIPVKDFNLPGASLVFVTKRAQ 618 Query: 753 GKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 812 KRT + EY T I+ V+ + Q+++++ G +R E+ Sbjct: 619 VKRTELKEYMTTR---STAIAAAKVAEGDEVIRVTLSEGTKQLLLVSKLGMSIRFSEQEV 675 Query: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 + +GR GV ++ ED+ ++ + VA+ E Sbjct: 676 NAMGRVAAGVRGMQLREDDELIAAEWVADDEGE 708 >UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon RepID=D1JED8_9ARCH Length = 843 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 384/865 (44%), Positives = 552/865 (63%), Gaps = 64/865 (7%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + V++E+E+ SY+DYAMSVIVGRALPD RDGLKPVHRR+LY M+ LG N+ +KK Sbjct: 12 ERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPHKK 71 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VGDV+GKYHPHGD AVYDT+VRMAQ FS RY LVDGQGNFGS+DGD+AAAMRYTE Sbjct: 72 SARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDGDAAAAMRYTEA 131 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL+KIA EL+ DLEK+TV++ N+D + K P ++P K+PNLL+NGSSGIAVGMATN+PPH Sbjct: 132 RLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMPPH 191 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NLTEV++G + I++ ++SIE LM+ I PDFPT II G GI+ AY TGRG + IRA+ Sbjct: 192 NLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIGYEGIKRAYETGRGSIRIRAK 251 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 AE+EV K +E I+++EIPYQVNK+RL+E+IAE K+ +VE IS LRDESD+ GMRIVI Sbjct: 252 AEIEVKGK--KERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKGMRIVI 309 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K A ++LN LY TQL+ +FG+ +AL G+P+++ LK++I +++HR+EV RR Sbjct: 310 ELKAGANSAIILNRLYKHTQLENTFGVINLALIDGEPRVLTLKELIECYIKHRKEVTIRR 369 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 +EL +A R HIL+ L +A++NID +I LI+ A AK+AL+A Sbjct: 370 LQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR------------ 417 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E+QA+ ILD+RL +L+ LE +K+ E EL +I Sbjct: 418 ----------------------FELSEEQAKEILDMRLSRLSALERDKIETERAELETKI 455 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 L +LGS R+ E+++E+L ++++GD RRT I ++ D + +++V++ L+ Sbjct: 456 NWLKEVLGSEARIYELLKEDLIEQKDKYGDARRTNIE-EMVTLSERDFVEEKEVILYLTQ 514 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 + YVK P ++ Q RGGKG + KE+D I + A+T + ++ F+ G+ Y +K Y Sbjct: 515 RDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQVKTY 574 Query: 606 QLPEATRGARGRPIVNL----LPLEQDERITAILPVTEF--------EEGVKVFMATANG 653 ++P ++R ++G+P+VN+ + E+ E+ + + E EG + AT G Sbjct: 575 EIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATKRG 634 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS----------GEDEVMLFSAEGKV 703 VK++ L + +R+ G VA++ GD L V L G++ ++L S GK Sbjct: 635 VVKRSSLAKLKAIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSKNGKA 694 Query: 704 VRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-----VPRGDGAILTATQNGYGKRTAV 758 + F E +R MG GVRG+RL + D++ S+ V + +T T+ GYGKRT + Sbjct: 695 IFFHEEELREMGRYAAGVRGMRLEKDDEIASVEALDVGVSKEKSRAVTITEKGYGKRTKL 754 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRN 818 Y R KGVISIK ERNG VV QV + D++M+ T G + + V IS+ GRN Sbjct: 755 DAYRETHRGGKGVISIKTGERNGKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRN 814 Query: 819 TQGVILIRTAEDENVVGLQRVAEPV 843 TQGV ++ + E VV + ++ Sbjct: 815 TQGVRIMNVKKGERVVAVDILSATE 839 Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 94/254 (37%), Gaps = 33/254 (12%) Query: 629 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVD 686 E + + EE + T VK+ F + GK I+ + D+++ Sbjct: 492 EEMVTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFI 551 Query: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR-------GIRLGEGDKVVSLIVPR 739 S + ++ F+ GK + K + ++ G I E +K V+ + Sbjct: 552 RASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIP 611 Query: 740 GD-----------GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQ 788 + ++ AT+ G KR+++A+ + GV++++ T + + V Sbjct: 612 EEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLKAIR--STGVVAVRTT-KGDSLADVVL 668 Query: 789 VDDCDQ----------IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + I++ + G + E+ +GR GV +R +D+ + ++ Sbjct: 669 IKPSLDSQDRGAGQNGIILSSKNGKAIFFHEEELREMGRYAAGVRGMRLEKDDEIASVEA 728 Query: 839 VAEPVDEEDLDTID 852 + V +E + Sbjct: 729 LDVGVSKEKSRAVT 742 >UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M119_ACIFD Length = 816 Score = 901 bits (2328), Expect = 0.0, Method: Composition-based stats. Identities = 353/838 (42%), Positives = 496/838 (59%), Gaps = 36/838 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 A + + ++EE++ S+L+Y++SVI+ RALPD RDGLKPVHRR+LY+M G ++ + Sbjct: 9 ASNVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHV 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYT 123 K A+VVGDV+ ++HPHGD+A+YD +VRMAQ FSL + L+DG GNFGS D AA RYT Sbjct: 69 KCAKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYT 128 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RLA IA EL+A ++++TVDFV NYD P V+P + PNLLVNGS GIAVGMAT IP Sbjct: 129 ECRLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIP 188 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 HNL EV++ ID + +++ LM +PGPDFPT II GR GI +AYRTGRG V +R Sbjct: 189 SHNLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIILGRDGIRDAYRTGRGSVKLR 248 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 A A +E I+V EIP+Q + + +KI LV+EK +EGI +++ S R Sbjct: 249 AVATIEE--ARSGYQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFSAGSETRF 306 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 VIE+KRDA VVLNNLY T LQ SF I M+AL G P+ +NL + +V H+REV+ Sbjct: 307 VIELKRDANPNVVLNNLYRLTPLQTSFPIQMLALVDGAPRTLNLLGLCQIYVDHQREVIR 366 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ F L KAR+R HI+E L + +D +I I Sbjct: 367 RRSEFRLGKARERLHIVEGLLSCIDQLDAVIATI-------------------------- 400 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 A + + + +E QA ILD+ L +LT L E+L +E L Sbjct: 401 -------RASEDRAAARAALMAEPFGFSELQANHILDMTLGRLTRLGREELEEEAATLRA 453 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 IAEL IL A RL V+++E+ ++ RRT + D EDLI E +VV + Sbjct: 454 TIAELEAILADAQRLSAVVKDEMLAATAEYRQARRTRFEVDPGDFAAEDLIEDEPIVVLI 513 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S GY+K P S ++AQ RGG+G AR+K+ED I ++ ++ +L FSSRGRVY ++ Sbjct: 514 SRSGYIKAVPESSFKAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLR 573 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 Y+LP+ R ARG +VNL+PL DERIT+++ +F E + T NG VK+T + E+ Sbjct: 574 GYELPKLERSARGTALVNLVPLADDERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEY 633 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 R R G +AI + DEL+ V + + E + ++F+ G+V+RF + VR G T GVR Sbjct: 634 ARSRRDGIIAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVRRTGRATAGVRS 693 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 IR +GD +V+ + +L T GYGKRT + +P R G+ I +TER G + Sbjct: 694 IRRADGDWIVAGGLIEDGVEVLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERKGEL 753 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 V A V D++++++ G ++R R+ +IS GR GV LI +E+V + V E Sbjct: 754 VAAAFVRPEDEVLIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVPE 811 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 11/212 (5%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNR--LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFS 698 E+ V + + +G +K + F G V ++ D DE+ V +S +++FS Sbjct: 505 EDEPIVVLISRSGYIKAVPESSFKAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFS 564 Query: 699 AEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRG---DGAILTATQNGY 752 + G+V + + + + + G V + L + +++ S++ + D ++ T+NG Sbjct: 565 SRGRVYQLRGYELPKLERSARGTALVNLVPLADDERITSVMGTKDFPEDADLVFFTRNGM 624 Query: 753 GKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 812 KRTA+AEY R G+I+I V + +V V + ++ T G ++R ++E+ Sbjct: 625 VKRTAMAEYARSRRD--GIIAIDV-RGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEV 681 Query: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 GR T GV IR A+ + +V + + V+ Sbjct: 682 RRTGRATAGVRSIRRADGDWIVAGGLIEDGVE 713 Score = 43.3 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 52/116 (44%), Gaps = 4/116 (3%) Query: 736 IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 795 + + ++ +++GY K + + + R +GV+ +V + + + ++ Sbjct: 502 DLIEDEPIVVLISRSGYIKAVPESSFKAQGRGGRGVVGARVKDE-DEIAHVISSSMLSRL 560 Query: 796 MMITDAGTLVRTRVSEISIVGRNTQGVILIRT---AEDENVVGLQRVAEPVDEEDL 848 ++ + G + + R E+ + R+ +G L+ A+DE + + + ++ DL Sbjct: 561 LVFSSRGRVYQLRGYELPKLERSARGTALVNLVPLADDERITSVMGTKDFPEDADL 616 >UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 Tax=Thalassiosira pseudonana RepID=B8BXG7_THAPS Length = 820 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 339/848 (39%), Positives = 503/848 (59%), Gaps = 51/848 (6%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 + YA+S+I+GRALPD RDG+KPVHRR+LYAMN LG + +Y+K ARVVG+V+GKYHPHG Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI-AHELMADLEK 140 D+AVYD +VR+AQPFS L+DG GNFGSID D AAAMRYTE RL +I A L+ D+ Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID- 199 +TV+F+ N+DG+E P V+P K+P LL+NG +GIAVGMATN+PPHNL E+++ C+A Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180 Query: 200 ----DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV----- 250 E+++ L++ IP PDFPT A I G+ G Y TG G V +RA +E Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240 Query: 251 -DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 K+ R IIV E+PYQVNKA L+E+IA LV EK++EGI+ LRDESD+DG+R+VIE+KR Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHG--QPKIMNLKDIIAAFVRHRREVVTRRTI 367 DAV VV NNL +T LQ +F N +AL G P+ L++ + F+ R + + + Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F+L K +RAHI+ L +AL + D +I ++R+AP A A+ AL++ Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTD------------- 407 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + L+ QA A+L L+L +LT L +KL DE K L + Sbjct: 408 -----------------NPKLGLSSAQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTN 450 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L +L + + + + EE ++++FG R+T+I + D DL+ E V+ ++ G Sbjct: 451 LRNLLTNDAAVRDTMLEEFMAMKKRFGTPRKTKILPDEEDKADIDLVQNERSVIVVTRGG 510 Query: 548 YVKYQPLSEYEAQRRGGKGKSAAR--IKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 Y+K PL +E+Q RG +GK I +++ + N HD +L + G Y ++ Y Sbjct: 511 YIKRMPLKTFESQNRGTRGKRGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAY 570 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 Q+PE R ARG PI ++LP++ D+ IT++LPV+EF + + +AT G +KKT L F + Sbjct: 571 QVPEGGRTARGAPIPSVLPVKSDDVITSVLPVSEFSKNEFIVLATEYGWIKKTPLAAFEK 630 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 L G + L DGD L + + D++++ S G+ RFK + +R + GV+ + Sbjct: 631 LTQRGLIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRPTARTSRGVKSMT 690 Query: 726 LGEGDKVVSLIVPRGDGA-ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT--ERNGL 782 L +GD + + V R + +L T GYGKR E+ T +R GVI+IK + Sbjct: 691 LKKGDTIADMNVLRKEDKFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDR 750 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL--IRTAEDENVVGLQRVA 840 + V++ D+I++IT G +VR +VS+IS GR GV++ + +++ + V Sbjct: 751 ISTMRVVNEDDEILLITSQGVIVRQKVSDISCQGRAATGVLVQKVDVRSGDSISTVSIVP 810 Query: 841 EPVDEEDL 848 + + D+ Sbjct: 811 KEDADGDV 818 >UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicutes RepID=PARC_BACSU Length = 806 Score = 896 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 327/842 (38%), Positives = 493/842 (58%), Gaps = 44/842 (5%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + +EE + + Y+ +I RALPD RDGLKPV RR+LYAM+ GN ++K ++ Sbjct: 4 PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFR 63 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K+A+ VG+VIG YHPHGDS+VY+ +VRM+Q + +R +L++ GN GSIDGD AAMRYTE Sbjct: 64 KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL+ IA EL+ D++K TV+FV N+D T K P V+P PNLLVNGS+GI+ G AT+IPP Sbjct: 124 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 H+L EVI+ + I S++ LME I GPDFPT II G GI +AY TG+GK+ IR Sbjct: 184 HHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRG 243 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 +AE+E + GRE I++ EIP++VNKA L++K+ E +K+VEGIS +RDE+D+ G+R+V Sbjct: 244 KAEIET-IRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVV 302 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+K++A + +LN LY T LQ+++ NMVA+H+ +P +M+L I+ A++ H++EVVT Sbjct: 303 IELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTN 362 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R+++EL+KA+DR HI+E L AL+ +D +I IR + +AK L+A Sbjct: 363 RSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK----------- 411 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Y TE QA+AI+ L+L +LT + L +E +EL + Sbjct: 412 -----------------------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKK 448 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRT--EITANSADINLEDLITQEDVVVT 542 I EL IL + +L++VI L+ +++++ D RR+ E INLE ++ EDV VT Sbjct: 449 IEELESILSNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVT 508 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 ++ GY+K + A G +K+ D + NT D +L F+++G Sbjct: 509 VTKDGYLKRTSQRSFAASNGQDFG-----MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYC 563 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 V+QLP+ G+ NL+ +++DE I +P+ EF+ + T NG VKKT LT Sbjct: 564 PVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLFFTKNGMVKKTELTH 623 Query: 663 FNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 + R + VA+ L DELI V +T+GE ++ + + G + F E V +G GV Sbjct: 624 YKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGV 683 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN- 780 +GI L E D VVS + + +I+ TQ G KR +++E+ SRA +GV+ ++ ++N Sbjct: 684 KGINLKEDDFVVSGEILQQSDSIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNP 743 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 VV ++M T+ G + E+ R + G E V + R+ Sbjct: 744 HRVVALFACGLEQRLMAETEKGDRKELQTKELRTNDRYSNGSFFFDEEESGKVTAVWRLH 803 Query: 841 EP 842 Sbjct: 804 TE 805 >UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C558B Length = 883 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 352/757 (46%), Positives = 506/757 (66%), Gaps = 10/757 (1%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I P++I +EL+ SYL YA SVI+ RALPDVRDGLKP RR+L AMN LG + K A Sbjct: 23 INPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCA 82 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++G+ + +YHPHGD+++YD++VRMAQ ++LRY LV GQGNFGSI G AA RYTE RL Sbjct: 83 GIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPPAAHRYTEARL 142 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A EL+ DLE++TVDF+DNYDG + P V+P K PNLLVNGS GIAVGMAT+IPPHNL Sbjct: 143 TPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNL 202 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EV + +D+ ++ L++ IPGPDFPT II GR+G+ EAY G GK+ +RARA+ Sbjct: 203 REVCKALVLLLDNPGATLADLIQIIPGPDFPTGGIIMGRQGLLEAYARGAGKITLRARAQ 262 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK---DGMRIV 304 V + K +I++ E+P+QV + ++E+IA LVKE+R+ +S +RDES + +R++ Sbjct: 263 VMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRLI 322 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +E+KR +VLN LY T+LQ + I M+AL G+P+ + LK+++ F+ HR V+ R Sbjct: 323 VEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVDGRPRELTLKEMLQKFLDHRVHVIRR 382 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT F LR+A+ R H+LE +A+A+I+ +I++ R +P AEAK L L AA++ Sbjct: 383 RTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQG----LAVPAALM 438 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 +RA + A V + Y +TEQQA+A+++LRL +L LE E++L EY +L + Sbjct: 439 QRAIGEGAFAALQRELGAVAE--YRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLREL 496 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I +L + VIRE+LE + ++GD R+TE++ + D+++EDLI E VVT+S Sbjct: 497 IRGYETLLSDDANIHAVIREDLERMAAKYGDDRKTEVSDDGGDVDMEDLIVDEPNVVTIS 556 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H+G+VK L+EY Q RGGK +++ DF++ VA+T ++LCF++ GR+Y +KV Sbjct: 557 HEGFVKRMALTEYRVQGRGGK-GVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLKV 615 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++P A R + GR I N+L L + E+I++I+PV EF EG + MAT GTVKKT L ++ Sbjct: 616 YRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTVKKTDLMAYS 675 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +R G + I L +GDELI V LT DEV+L + +G +RF+ES++R MG GVRGI Sbjct: 676 NVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIRFRESAIRPMGRTARGVRGI 735 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY 761 +LG+ D +V ++V DG +LT +NGYGKRT Sbjct: 736 KLGKDDALVGMVVADPDGLLLTVCENGYGKRTPFGAN 772 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 12/209 (5%) Query: 642 EGVKVFMATANGTVKKTVLTEFN-RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 + V + G VK+ LTE+ + R V L D D + + S + ++ F+ Sbjct: 548 DEPNVVTISHEGFVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANT 607 Query: 701 GKVVRFKESSVRAMGCNTTGVRGI----RLGEGDKVVSLIVPRG---DGAILTATQNGYG 753 G++ K + G + G R I L EG+K+ S++ R +L AT+ G Sbjct: 608 GRMYWLKVYRIPTAGRTSPG-RAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTV 666 Query: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 813 K+T + Y + G+I I + E ++ D++++ T G +R R S I Sbjct: 667 KKTDLMAYSNVRQG--GIIGITLDE-GDELINVALTRANDEVVLSTQKGMAIRFRESAIR 723 Query: 814 IVGRNTQGVILIRTAEDENVVGLQRVAEP 842 +GR +GV I+ +D+ +VG+ Sbjct: 724 PMGRTARGVRGIKLGKDDALVGMVVADPD 752 >UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7J5_MYCH7 Length = 853 Score = 888 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 342/851 (40%), Positives = 532/851 (62%), Gaps = 38/851 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + + I+P+ IE+E+K+S+LDY+MSVIV RALPDVRDGLKPVHRR+LY M LG Sbjct: 39 LESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSG 98 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +YKKSAR+VGDV+GKYHPHGD++VY+++VRMAQPFSLRY LVDG GNFGSIDGD AAAM Sbjct: 99 TSYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAM 158 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+KI+++++ L+K TVDF NYD +E P+V+P K PNLLV+G SGIAVGM T Sbjct: 159 RYTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMT 218 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL E+I+ + + + I I L+ +PGPDFPT A I G++GI +AY TG+G Sbjct: 219 KIPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSF 278 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IRA+A++E + +GR II +EIPY+V K +IEK+A LV+ K++ GI +RDES + G Sbjct: 279 IIRAKAKIE-NLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHG 337 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V E+K+ E++LN LY T LQ+++ INM+AL +G PK+MNL I ++ H++E Sbjct: 338 IRVVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKE 397 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + R F+L KA ++ ++LE + VA+ NID +I++I+ + + A+ L Sbjct: 398 INLRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHT------- 450 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y L Q +AI+++RL +LT L EKL +E +E Sbjct: 451 ---------------------------YNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEE 483 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L +I+E+ I+ S +L+++I E+ + V QFGD RR+EI ++ EDLI E V+ Sbjct: 484 LKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVI 543 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 ++L+ YVK L EY Q RGG G A+ ++D + L + NT +L SS +++ Sbjct: 544 ISLTQNNYVKKMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIF 603 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++ +Q+P+ ++ +G PI+NL+ LE++E I+ ++P + + + +A G +KKT L Sbjct: 604 KLRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTAL 663 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLT--SGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 + F + GK+A+KL + D L+ + + + +++ S++G V R+ +R G Sbjct: 664 SAFRNITKNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRDSGRTA 723 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GV+GI+L EG K++ + I + ++ G+GK+T V EY R TKG++S+ + Sbjct: 724 IGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDA-K 782 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + G +V + + + ++ T G +R + + I+ R T+GV +I + + + + Sbjct: 783 KAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 842 Query: 839 VAEPVDEEDLD 849 +++ E+ + Sbjct: 843 ISKNETEKQNE 853 >UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZG6_BACS4 Length = 834 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 326/870 (37%), Positives = 498/870 (57%), Gaps = 51/870 (5%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + +E+ + + Y+ +I RALPD RDGLKPV RR+LYAM N +K ++K Sbjct: 5 ERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFRK 64 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 +A+ VG+VIG YHPHGDS+VYD ++R +Q + +R++LV GN GSIDGD AAMRYTE Sbjct: 65 AAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRYTEA 124 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL+ I+ EL+ D+EK+TVDF+ N+D + + P V+P++ PNLLVNGS+GI+ G AT+IPPH Sbjct: 125 RLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIPPH 184 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 +L EVI+ + +++ D +++ LM+HI GPDFPT I G G+++AY TG+GK+ +R + Sbjct: 185 HLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTIQGVDGLKKAYETGKGKIVLRGK 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 AE+E D + G++ I++ EIPY+VNKA L++++ EL +K+V+GI+ +RD++D+ G+RIV+ Sbjct: 245 AEIE-DVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRIVV 303 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K++A + +L+ LY T LQVS+ NMVA+ + PK++ LK ++ A++ H++EVVTRR Sbjct: 304 ELKKEADSKGILHYLYKNTDLQVSYNFNMVAIFNKTPKLLGLKHMLEAYINHQKEVVTRR 363 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T F+L KA++RAHI+E L A++ +D +I+ IR + +AK L Sbjct: 364 TKFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQ-------------- 409 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 +Y TE QA+AI+ L+L +LT + L +E EL I Sbjct: 410 --------------------DMYQFTEPQAEAIVTLQLYRLTNTDVTTLEEEASELKKLI 449 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVVTL 543 +L IL S L+ I+ EL+ +++++ + RRT I D INLE +I EDV VT+ Sbjct: 450 EKLEAILSSEKNLINEIKRELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTV 509 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + +GYVK L Y A G +KE D + L NT D +L F+ +G + Sbjct: 510 TKEGYVKRSSLRSYAASNGEPPG-----MKETDRLLYSLEINTTDTLLLFTRKGSFLFLP 564 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 V+QLPE G+ + NL+ ++ D+ I +PV EF + V AT G VKKTVL+E+ Sbjct: 565 VHQLPEIRWKDSGQHVANLVAMDNDDDILTAIPVKEFNDSEYVLFATKLGMVKKTVLSEY 624 Query: 664 NRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 R + +A+KL DE+I V L+ G ++ + G + F E V A G T GV+ Sbjct: 625 KAQRNSKALMAVKLKKDDEVISVTLSDGTHDIFFATHTGYGLWFTEEEVSATGQRTAGVK 684 Query: 723 GIRLGEGDKVVSLIVPRGDG--AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 I L + D VVS + + + + TQ K+ + + SRA +G++ +K +R Sbjct: 685 AINLKKDDFVVSCMSFKEESPPDLFLVTQRAAYKKMKLNVFEKTSRAKRGLVMLKELKRY 744 Query: 781 -GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 V + + I + T G V+ I R T G L T + V+ + Sbjct: 745 PHRVASLLPITKYGSIFVQTKNGNTDTIEVASIRSNDRYTNGSFLFDTGDTGEVIDVW-- 802 Query: 840 AEPVDEEDLDTIDGSAAEGDDEIAPEVDVD 869 +E D D D D Sbjct: 803 ---FEEGDAPNTDLDDEGSSRNAINNADDD 829 >UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC7F Length = 819 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 345/850 (40%), Positives = 517/850 (60%), Gaps = 48/850 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L+ + P +EE + + Y+ +I RA+PDVRDGLKPV RR+LYAM GN +K Y Sbjct: 3 LSEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPY 62 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VGDV+G YHPHGDS++Y+ +VRMAQP+ + ++LVDG GN+GS D D AAAMRYT Sbjct: 63 RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYT 122 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ IA EL+ D+EK TV F DN+D T K P V+P++ PNLLVNG+SGI+ G AT IP Sbjct: 123 EARLSPIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIP 182 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EVI+ C+A + +I ++ +M I GPDFPT II G GI +AYRTG+G+VY+R Sbjct: 183 PHNLREVIDACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLR 242 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 ++ +E + G++ I++ EIPYQV K+RL+ + + EK+VEGI+ +RDES ++G+RI Sbjct: 243 SKTVIE-SLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRI 301 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+E+K+DA +L L+ +T LQ+++ NMVA+ + P+ + LK +++A++ H+REVVT Sbjct: 302 VVELKKDADANGILAYLFKKTDLQITYNFNMVAIVNKTPQQLGLKAMLSAYIDHQREVVT 361 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RT FEL KA DRAH+LE L AL +D +I I+ + +A+ L Sbjct: 362 HRTQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQ------------ 409 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 ++ TE+QA +IL L+L +LT LE L E EL Sbjct: 410 ----------------------WMFGFTERQADSILTLQLYRLTNLEIHSLQKELDELTK 447 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI--NLEDLITQEDVVV 541 +I L IL S +L+ VIR+EL +RE++G RR+ I +I NLE L+ EDV+V Sbjct: 448 KIEGLRAILDSDKKLIGVIRKELIEIREKYGIDRRSVIQEEVEEIKVNLEVLVNAEDVLV 507 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 TLS++GY+K + + R G ++ +KE D+I RL NT +++L F+SRG+ + Sbjct: 508 TLSNEGYIKRTSMLSF---TRSGGELESSGVKEGDYITRLFEVNTLENLLIFTSRGQYFL 564 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE-GVKVFMATANGTVKKTVL 660 + V+Q+PE G IVN++ + +++ I +++PV+ F+E G + + G VK+T L Sbjct: 565 LPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEAGKSLVFVSRKGQVKRTDL 624 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E+ R+ A K+ D +I V ++ +++L S EG +RF E V AMG + G Sbjct: 625 KEYVTKRSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMSIRFNEQEVNAMGRVSGG 684 Query: 721 VRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE- 778 VRGI+L +GD+VV+ + V +G ILT T GYGKR+ + +YP +SR KG+ + + E Sbjct: 685 VRGIQLRDGDEVVAALWVENDEGEILTITDLGYGKRSLLLDYPAQSRGGKGMATFEFKEG 744 Query: 779 -----RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 +VGA + QI ++ G ++ I+ R + G +L ++ + Sbjct: 745 KRVKPNGSAIVGAFYCREPLQINAYSEDGQAFPIHTEKVPIMERKSIGKLLADVGKNGQI 804 Query: 834 VGLQRVAEPV 843 V L + Sbjct: 805 VDLVSLPHAE 814 Score = 99.2 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 99/242 (40%), Gaps = 15/242 (6%) Query: 612 RGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG- 670 R G +++ E +E + + E+ + + G +K+T + F R+ G Sbjct: 474 REKYGIDRRSVIQEEVEEIKVNLEVLVNAED--VLVTLSNEGYIKRTSMLSF--TRSGGE 529 Query: 671 KVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLG 727 + + +GD + + + + +++F++ G+ V G V I++ Sbjct: 530 LESSGVKEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVP 589 Query: 728 EGDKVVSLIVPRG----DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 + D +VS+I +++ ++ G KRT + EY R+ + E + Sbjct: 590 KEDHIVSVIPVSNFDEAGKSLVFVSRKGQVKRTDLKEY-VTKRSGAVAAAKVAAE--DSI 646 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 + V D I++I+ G +R E++ +GR + GV I+ + + VV V Sbjct: 647 IQVVMSDSNKDIVLISKEGMSIRFNEQEVNAMGRVSGGVRGIQLRDGDEVVAALWVENDE 706 Query: 844 DE 845 E Sbjct: 707 GE 708 >UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorferi group RepID=GYRA_BORBU Length = 810 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 334/836 (39%), Positives = 525/836 (62%), Gaps = 39/836 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +I V IE+E+K+SYL+YAMSVIV RALPDVRDGLKPVHRR+LY+M +G +KA+KK Sbjct: 8 EQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFKK 67 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 + R+VGDV+GKYHPHGD ++YD +VR+AQ FSLRY ++ GQGNFGSIDGD AAMRYTE Sbjct: 68 AGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTEA 127 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 ++ KI ++ D++KETV+F NYD + P++MP+ P LLVNGSSGIAVGMATN+ PH Sbjct: 128 KMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAPH 187 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+ + + +D+E+ SI L++ + GPDFPT I + +AY+TG+G V IRAR Sbjct: 188 NLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVIRAR 247 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 +E A+ R IIV EIPY VNK+ L+ K+A L KE+++EG+ +RDESD++G+RIV+ Sbjct: 248 YHIEERAE-DRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIVL 306 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 EVKR V++N LY T+ + F IN +AL +G PK +NL++++ F+ HR+ ++ RR Sbjct: 307 EVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIERR 366 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 F+LRKA+++AH+LE L +AL NID +I++I+ + +A+ LV+N Sbjct: 367 IEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSN------------ 414 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E QA ++LD+RLQKLT LE KL +E LL I Sbjct: 415 ----------------------FGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLI 452 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA--DINLEDLITQEDVVVTL 543 + IL + R++ +IREE + +FGD+RRT+I + ++ DL+ +E++VV L Sbjct: 453 KDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVML 512 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + +G++K +EY+ Q GGKG S+ + + D I L NTHD++ S+ G++Y + Sbjct: 513 TKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLIN 572 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 Y++ +++R ++G+ I L+ L E I I + + + + TA+G + + T+F Sbjct: 573 AYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDF 632 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 +++ G + IKL D D + ++ +++V+ S +G F VR T GV G Sbjct: 633 KAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCG 692 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN-GL 782 ++L EGD V ++ + + +L ++NGYGKR +++ R G S K +++ G Sbjct: 693 MKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGS 752 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 VV A+ V + D+I++++ +RT ++S G++ +G+ ++ +++++V + + Sbjct: 753 VVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFL-DNDSLVSVSK 807 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 11/222 (4%) Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGV 685 DE + ++ V M T G +K+ E+ T GK + L DGDE++ Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIA 550 Query: 686 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLI---VPR 739 + D + + S EGK+ ++ + G I LG+ ++++++ Sbjct: 551 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLT 610 Query: 740 GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMIT 799 D +L T +G R ++ ++GVI IK+ ++ V A V ++++ ++ Sbjct: 611 DDAYLLLTTASGKIARFESTDFKAVK--SRGVIVIKLNDK-DFVTSAEIVFKDEKVICLS 667 Query: 800 DAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 G+ ++ + R TQGV ++ E + V + V E Sbjct: 668 KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKE 709 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 74/174 (42%), Gaps = 10/174 (5%) Query: 679 GDELIGVDLTS---GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSL 735 +E++ ++ E+ V++ + +G + R ++ + G G+ L +GD++V Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIA 550 Query: 736 IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-----VISIKVTERNGLVVGAVQVD 790 + + + G E SRA+KG +I++ E + + + Sbjct: 551 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLT 610 Query: 791 DCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 D +++ T +G + R ++ V ++GVI+I+ + + V + V + Sbjct: 611 DDAYLLLTTASGKIARFESTDFKAV--KSRGVIVIKLNDKDFVTSAEIVFKDEK 662 >UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FW91_DESHD Length = 808 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 344/848 (40%), Positives = 509/848 (60%), Gaps = 53/848 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MS IT ++EE L SYL Y+ VI+ RA+PDVRDGLKPVHRR++YAM+ LG + Sbjct: 1 MSIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPD 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K Y KSAR+VGD +GKYHPHGDS++YD VRMAQP++ RY L+DGQGNFGSIDGD AAAM Sbjct: 61 KPYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R+ ++ + D+EK+ + F NYD EK P V+P+ PNLLVNG SGIAVGMA+ Sbjct: 121 RYTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMAS 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EV+ + ID+ +++E LME + GPDFPT +I G +G EAYR+GRGKV Sbjct: 181 NIPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKV 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R +A +E K G+ I++ EIP+QV+K+ L KI + ++EGIS +RDESD++G Sbjct: 241 TMRGKAIIE-SGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRR 359 +R+V+E K+DA + +L LY TQLQ +FGI + + G P+++ LK+I ++++HRR Sbjct: 300 IRLVVECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRR 359 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVV RRT +EL KA+ RAHILE L +A+ N+D ++++IR + TPA AK L+ Sbjct: 360 EVVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR------ 413 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + +E QAQAILD++LQ LT LE + + EY Sbjct: 414 ----------------------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYA 445 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE-- 537 E+L IAEL IL +++ +I+ EL+ + +Q+GD+RRT I ++ +E Sbjct: 446 EILKLIAELESILADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPE 505 Query: 538 -DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + V L+ +G++K P RR A K+ D + + + D + F+ Sbjct: 506 KPMEVLLTRKGFIKQIPTPT----RRSQINAIAFAFKDGDVLLEHVSCTSKDTLYFFTHS 561 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G+ Y K + EA +GR + NL PL ++ERI A++ + E +EG T +G V Sbjct: 562 GKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQYFVFVTKDGQVM 621 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 ++ + +F RTA A+ L + DE++ V L++GE E+ L S +G+ +RF E+ V MG Sbjct: 622 RSPVKDFLNARTA--EAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMGR 679 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGD-----GAILTATQNGYGKRTAVAEYPTKSRATKGV 771 + GV+G+ L EGD VV ++ + G ++T T+ GY KRT++ EY + RA +G+ Sbjct: 680 KSRGVKGMTLNEGDYVVDALLIQPGADGETGDLITVTEQGYVKRTSLEEYKPQGRAGRGI 739 Query: 772 ISIKVT-ERNGLVVGAVQVDDCDQIM--MITDAGTLVRTRVSEISIVGRNTQGVILIRTA 828 K+ E+ G +V +QV + + +I G + + R G L+ Sbjct: 740 AIAKIDAEKTGYLVSLIQVGPKEDKLLHIIQAGGAVTGVEAQSLKRESRVKSGAGLVNVI 799 Query: 829 EDENVVGL 836 ++ +V + Sbjct: 800 INDYIVHV 807 Score = 89.2 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 103/272 (37%), Gaps = 17/272 (6%) Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 + +VY++ +L + +LP + + + E E + T Sbjct: 457 ILADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDY--SAFEEPEKPMEVLLTR 514 Query: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 711 G +K+ R +A DGD L+ + +D + F+ GK K V Sbjct: 515 KGFIKQIPTP--TRRSQINAIAFAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKAKLV 572 Query: 712 RAMGCNTTGVRGIR----LGEGDKVVSLIVPRGD---GAILTATQNGYGKRTAVAEYPTK 764 G G R + L E +++V+++ R + + T++G R+ V ++ Sbjct: 573 AEAGAKEKG-RAVNNLFPLPEEERIVAMVSLREEKEGQYFVFVTKDGQVMRSPVKDFL-- 629 Query: 765 SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL 824 + ++ + E+ +V ++ + + G +R +E++ +GR ++GV Sbjct: 630 --NARTAEAMGLKEQ-DEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMGRKSRGVKG 686 Query: 825 IRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 + E + VV + D E D I + Sbjct: 687 MTLNEGDYVVDALLIQPGADGETGDLITVTEQ 718 >UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXA6_HALOH Length = 796 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 340/846 (40%), Positives = 533/846 (63%), Gaps = 53/846 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A +I + IE+++K SYL Y++SVI RALPDVRDGLKPVHRR+LYA LG +K + Sbjct: 1 MAEKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPH 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VG+V+GKYHPHGD++VYD +VRMAQ F+ RY L+DG GNFGSIDGDS AAMRYT Sbjct: 61 KKSARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL ++A ++MAD+ ++TVDFVDN+DG+ + P+++PTK+PNLL+NG+SGIAVGM+T+IP Sbjct: 121 EARLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EV++ + + + +E +M++IPGPDFPT A I G GI++AY+TG GK+ +R Sbjct: 181 PHNLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIVGLSGIKKAYKTGNGKITLR 240 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 AR ++E K ++ II+ EIPY +NK +L+E IAEL+ + +++ +S LRDESD++G+RI Sbjct: 241 ARTQIE--KKGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRI 298 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+E+K A +++LN LY T LQ ++ INM+AL QP++M+L I+ F+ RR+V+T Sbjct: 299 VVELKSGADPDIILNQLYKFTSLQTNYRINMLALDGKQPRVMDLITILKNFINFRRQVIT 358 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT ++L KA++R H+L+ L A+ +D +I +IRH+ + EA+ L Sbjct: 359 RRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEK---------- 408 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 +TE+QA+AIL +RLQKL G+E EKL E L + Sbjct: 409 ------------------------LVITEKQAEAILRMRLQKLVGMEEEKLHQESAGLEE 444 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 QI +IL + + L +V+++EL ++ ++ DKR+TEI + I DLI +E V + Sbjct: 445 QIKYYKKILNNKNELDKVLKKELLDIKNKYADKRKTEIIEDEEKAIIEKTDLIKKEKVFL 504 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 T S++ +K SEY R GK D+I + T D +L F++ G VY+ Sbjct: 505 TFSYRQNIKRTTSSEY---ARAGK---------NDYIIDTMTGTTLDTLLFFTNTGDVYT 552 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + V+++PE + G I + L + ++I ++ + E + + +AT G VKKT+ Sbjct: 553 LPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVICLNEETKEKYITIATKQGMVKKTIGG 612 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 E+ + AIKL GDE++GV++T G E++L + + K +RF+E SV G NT G Sbjct: 613 EYQTTYSR-IKAIKLNKGDEVVGVEITDGNQEILLGTKKAKTIRFEEDSVSDTGRNTIGS 671 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 GI+L +GD+VVS + + ++++ ++ G GKR+ + EY ++R KG+ + + Sbjct: 672 IGIKLAKGDEVVSFNLVNNNTSVVSISKTGRGKRSPIEEYNPQNRNGKGLKTCGSSIYK- 730 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 + G + + D I++ T L +V++++ R ++ D+ + G++++ Sbjct: 731 -MAGVICANPDDYILITTGNEKLYTVKVNDLTETSRTGNMYEVVSLKNDDKITGVEKLPF 789 Query: 842 PVDEED 847 +E++ Sbjct: 790 APEEDN 795 >UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5 Tax=Thermoplasmatales RepID=Q9HJB6_THEAC Length = 796 Score = 878 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 343/834 (41%), Positives = 513/834 (61%), Gaps = 42/834 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + +E E++ SYL+YAMSVIV RA+PDVRDGLKPV RRVLY+M LG +K YKK A Sbjct: 4 MEKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VG+ +GKYHPHGD A+YD +VRMAQ FSLRY LVDGQGNFGSIDGDS AAMRYTE RL Sbjct: 64 RIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARL 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +IA ++M D+++ TV F N+DGT P+ +P+KIPNLL+NGSSGIAVGMATN+ PHNL Sbjct: 124 TQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 TE+ + L +D D ++ L++++ GPDFP I+ + + EAYRTGRGKV ++ Sbjct: 184 TEICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG--- 240 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 EVDA R +I+ IPY VNKA L++ IA+L K + ++ I+ ++DESD++G+RIVI+V Sbjct: 241 -EVDATEDR-RLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKV 298 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 + D + +VLN LY T L+ S GI + L QPK+MNLKD+I +F+ HR +V+ RR+ Sbjct: 299 RDDDIKPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQ 358 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F L + ++R +L + A+ +ID ++E+++ + EA + L Sbjct: 359 FRLDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNE-------------- 404 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + L ++Q +AIL++RLQ+L E E + E ++ +I + Sbjct: 405 --------------------FDLNDRQIKAILEMRLQRLVNTEQESVRSEIAQIQAEIKD 444 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDVVVTLSHQ 546 L I+ S DR ++ ++E+ +++++GDKRR+ I + +EDLI E+ ++ LS+ Sbjct: 445 LEEIILSEDRRIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYG 504 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 G VK EY +QRRGGKG + +K D I ++ +HD + F++ GRV+ K Y+ Sbjct: 505 GLVKRVQADEYRSQRRGGKGVN-TSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYE 563 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P+ +R + G L L Q ER+T I+ E+G + + T +G+VKKT Sbjct: 564 IPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPP-EKGYYLILVTRDGSVKKTAADPVFDS 622 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 +++G I L D DEL+ V T+G+ + + S++GK F S +R G + GVR +RL Sbjct: 623 KSSGLKIITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRETGRTSMGVRSMRL 682 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 EGD +++ V D IL+ ++ GYGKRT ++E+P R + GV+ + TER G V A Sbjct: 683 NEGDTILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSHA 742 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 + V D D++++++ +R + SEI R T GV L+ D+ V+ + Sbjct: 743 IPVRDEDEVILVSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796 Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 9/210 (4%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA-IKLVDGDELIGVDLTSGEDEVMLFSA 699 + M + G VK+ E+ R GK + D + + D V F+ Sbjct: 493 PNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIKSMIHCFSHDTVYYFTN 552 Query: 700 EGKVVRFKESSVRAMGCNTTGVRG---IRLGEGDKV--VSLIVPRGDGAILTATQNGYGK 754 G+V + K + + GV ++L +G++V + P ++ T++G K Sbjct: 553 TGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEKGYYLILVTRDGSVK 612 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 +TA + +I++ E + +V + +++ G SEI Sbjct: 613 KTAADPVFDSKSSGLKIITL---EDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRE 669 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 GR + GV +R E + ++ V D Sbjct: 670 TGRTSMGVRSMRLNEGDTILTAFVVNSDED 699 >UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5RLZ1_BORDL Length = 815 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 336/841 (39%), Positives = 534/841 (63%), Gaps = 39/841 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + + ++ + IE+E+++SYL+YAMSVIV RALPDVRDGLKPVHRR+LY+M+ +G + Sbjct: 8 IENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSD 67 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K++KK+ R+VGDV+GKYHPHGD ++Y+ +VR+AQ FSLRY +V GQGNFGSIDGD AAM Sbjct: 68 KSFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAM 127 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+AKIA EL+ D++K+TV+F NYD + P+V+P P LLVNGSSGIAVGMAT Sbjct: 128 RYTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMAT 187 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+ PHNL EV + + ++ +D+SI L+ I GPDFPT A I + +AY TG+G V Sbjct: 188 NMAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSV 247 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IRAR +E ++ +II+ +IPY VNK+ L+ KIA L+KE+++EG+S +RDESD++G Sbjct: 248 VIRARYHIEEKSE-DNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREG 306 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIV+E+K+ VV+N LY T+L+ +F IN +AL +G PK +NL+++I+ F+ HR+ Sbjct: 307 IRIVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKN 366 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ RR F+L++A+++AHILE L +AL NID +IE+IR + +A+ ++ Sbjct: 367 ILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMRE------- 419 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + L+E QA +ILD++LQKLT LE K+ ++++ Sbjct: 420 ---------------------------FQLSEIQANSILDMKLQKLTSLEVAKIEEDFQV 452 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA--DINLEDLITQED 538 +L I + IL S R++ +IREE+ + +FGD RRT+I + ++ DL+ +E+ Sbjct: 453 VLALIKDYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQREN 512 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V+V L+ QG++K EY+ Q GGKG + +++ D ++ L NTHD +L S+ G+ Sbjct: 513 VIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGK 572 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 +Y + Y + +++R +RG+ I L+ L + E I AI +E + + TANG + + Sbjct: 573 LYVINAYGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDNYLLITTANGKIARI 632 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 F +++ G + +KL D D + ++ S +D+++ S +G F + +R T Sbjct: 633 ETEGFKTVKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGT 692 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT- 777 GV G+++ EGD ++ + + +L ++NGYGKR V++ R + G K + Sbjct: 693 QGVSGMKVREGDMLIKALAIKQGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSD 752 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 E+ G VV A+ V D+I++I+ + ++RT V +IS G++ +G+ ++ E + +V + Sbjct: 753 EKAGEVVDAITVSQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLVAVS 811 Query: 838 R 838 + Sbjct: 812 K 812 Score = 66.1 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 7/159 (4%) Query: 691 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQN 750 E+ +++ + +G + R + + G G+ L + D+V + +L + Sbjct: 511 ENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNE 570 Query: 751 GYGKRTAVAEYPTKSRATKG-----VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 805 G SR ++G +I++ E + ++ + +++ T G + Sbjct: 571 GKLYVINAYGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDNYLLITTANGKIA 630 Query: 806 RTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 R V ++GVI+++ + + V + V+ Sbjct: 631 RIETEGFKTV--KSRGVIIMKLDDKDFVTSAEIVSRDDK 667 >UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y5U7_PHATR Length = 818 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 338/849 (39%), Positives = 487/849 (57%), Gaps = 60/849 (7%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 + YA+S+I+GRA+PD RDGLKPVHRR+LYAM+ L N ++K ARVVG+V+GK+HPHG Sbjct: 1 MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE-LMADLEK 140 D AVYD +VR+AQ FS Y L+DG GNFGSID D AAAMRYTE RL K++ L+ DL+ Sbjct: 61 DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID- 199 +TVDF+ N+DG E P V+P K+P LL+NGSSGIAVGMATNIPPHNL E++ C A + Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180 Query: 200 ---DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV-----D 251 ++ + L++ +PGPDFPT A I G E+ Y TG G + +RA ++E Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASILSTGGTEKLYTTGNGGIVMRAVTKIEKITTGRK 240 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 + R IIV E+PYQVNKA L+EKIA LV EK+++GI+ LRDESD+DG+R+VIE+KRDA Sbjct: 241 SSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRDA 300 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQ--------PKIMNLKDIIAAFVRHRREVVT 363 V VVLNNLY +T LQ +F N +AL P+ L+ + F+ R E + Sbjct: 301 VAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETIR 360 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 R++ F+L K R+HI+ L +AL +D +I+++R + A+ AL Sbjct: 361 RKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIELGT------- 413 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + +Q AIL L+L +LT L KL E +L + Sbjct: 414 ---------------------------SSEQTDAILKLQLGQLTRLNKGKLESEKADLEE 446 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI-TANSADINLEDLITQEDVVVT 542 L +L D + +V+REE + ++FG +R++ I + D DLI V+ Sbjct: 447 SRESLTHLLEVDDAVYDVMREEFIDMMKRFGGERKSSIIVEDDGDFCDMDLIENSRSVIV 506 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAAR---IKEEDFIDRLLVANTHDHILCFSSRGRV 599 ++ GY+K PL +E+Q RG +GK + + N HD +L + G Sbjct: 507 VTRGGYIKRMPLKTFESQGRGTRGKRGTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIA 566 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 Y ++ YQ+P A R A+G+PI ++LP+ DE ITAILPV+EF + V + T G +K+T Sbjct: 567 YGLRAYQVPIAGRTAKGQPIPSVLPVRGDEVITAILPVSEFSDEEYVVLTTEQGWIKRTP 626 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L F +L + G L DGD L ED++++ + G RF + +R G + Sbjct: 627 LDAFEKLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTVGGMATRFGAAKLRPTGRTSR 686 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGA--ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GVR ++L EGD + + V G ILT T GYGKR A +E+ ++R GVI+IK Sbjct: 687 GVRAMKLREGDTIADMNVLSGKNKEYILTVTAQGYGKRIATSEFRAQARGGVGVIAIKFK 746 Query: 778 --ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 + V V D ++I++IT G +VR + S+I GR+ GV++ R + +++ Sbjct: 747 RGQEEDKVSCLRIVKDDEEILVITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHISS 806 Query: 836 LQRVAEPVD 844 + V + + Sbjct: 807 VSIVPQYEE 815 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 11/214 (5%) Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 E+ VV + QG++K PL +E + +G + A +++ D + D IL + Sbjct: 609 DEEYVVLTTEQGWIKRTPLDAFE--KLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTV 666 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 G +L R +RG V + L + + I + V + + TA G Sbjct: 667 GGMATRFGAAKLRPTGRTSRG---VRAMKLREGDTIADM-NVLSGKNKEYILTVTAQGYG 722 Query: 656 KKTVLTEFNRLRTAGKVAIKLV-----DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS 710 K+ +EF G I + + D++ + + ++E+++ +A G +VR K S Sbjct: 723 KRIATSEFRAQARGGVGVIAIKFKRGQEEDKVSCLRIVKDDEEILVITARGIMVRQKASD 782 Query: 711 VRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAI 744 + + G + TGV R+ +GD + S+ + I Sbjct: 783 IPSQGRSATGVMVQRVDDGDHISSVSIVPQYEEI 816 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 84/217 (38%), Gaps = 16/217 (7%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNR--LRTAGKVAIK---LVDGDELIGVDLTSGEDEVM 695 E V + T G +K+ L F T GK E+ + D ++ Sbjct: 499 ENSRSVIVVTRGGYIKRMPLKTFESQGRGTRGKRGTSDGGESADSEVAHCFTCNDHDTLL 558 Query: 696 LFSAEGKVVRFKESSVRAMGCNTTG--VRGIRLGEGDKVVSLIVP----RGDGAILTATQ 749 + + G + V G G + + GD+V++ I+P + ++ T+ Sbjct: 559 MVTQNGIAYGLRAYQVPIAGRTAKGQPIPSVLPVRGDEVITAILPVSEFSDEEYVVLTTE 618 Query: 750 NGYGKRTAVAEY-PTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR 808 G+ KRT + + SR ++I E + +V + D I++ T G R Sbjct: 619 QGWIKRTPLDAFEKLSSRG----LTIATLEDGDRLKWCHRVRNEDDILIGTVGGMATRFG 674 Query: 809 VSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 +++ GR ++GV ++ E + + + ++ E Sbjct: 675 AAKLRPTGRTSRGVRAMKLREGDTIADMNVLSGKNKE 711 >UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae RepID=D2QWS9_9PLAN Length = 938 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 365/760 (48%), Positives = 492/760 (64%), Gaps = 10/760 (1%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D IE+ELK SYL YAMSVIV RALPDVRDGLKP RR+L AMN L Sbjct: 20 DDGTRFLDQPIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAP 79 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 K A++ GD G YHPHG+S +Y T+VRMAQ +++R++L+D QGNFGSI G AAMRY Sbjct: 80 RVKCAKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAAMRY 139 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL+ +A ++ DL +TVDFV YD + P V+P + PNLLVNG+ GIAVGMAT+I Sbjct: 140 TEARLSPVASMMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSI 199 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL EV + IDD ++++ L E I GPDFPT I GR GI YR GR + + Sbjct: 200 PPHNLGEVCEALVKVIDDPEVTLGELCEIIKGPDFPTGGTICGRAGIRRGYRDGRSTIVL 259 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGM 301 RA+ +E + K R II+ EIPYQ + R++EKIAELV E+R++GIS + D SD K+ + Sbjct: 260 RAKTRIE-EHKKDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPV 318 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 +VI++KRDA VVLN LY + LQ S I ++AL G+P+ ++LK+++ F+RHR V Sbjct: 319 HLVIDIKRDADPYVVLNQLYQFSPLQDSISIILLALVDGKPRELSLKELLEEFLRHRVTV 378 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 + RRT F L KAR R H +E L +ALANID II +IR + T AEAK L+ + Sbjct: 379 IRRRTQFLLSKARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQ 438 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 L G + E Y LT Q++AIL + L +L LE E+L E+ EL Sbjct: 439 RALGEEGFAMFQSE------RGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAEL 492 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS-ADINLEDLITQEDVV 540 L +IAE LRIL + + +I+EEL + ++GD+RRTEI+ D+NLEDLIT+E +V Sbjct: 493 LKEIAEYLRILADENIIRAMIKEELIAIAAKYGDERRTEISGEEIGDVNLEDLITEETMV 552 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V++SH+GY+K P S Y AQRRGGKG A+ ++ED I L VA+TH ++L F++ GRVY Sbjct: 553 VSISHRGYIKRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVY 612 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTV 659 KVY LPE +R +RGR IVNLL L + E+I + + +F+ +G + MAT G VKK+ Sbjct: 613 WQKVYDLPELSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSP 672 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L +++R + G +AIKL + DE++ V +T DEV+L ++ G +RF ES R MG NT+ Sbjct: 673 LEDYSRPKKGGIIAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIRFSESDARPMGRNTS 732 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 759 GV+GI L GD +V ++V D +LT +NGYGKRT Sbjct: 733 GVKGISLASGDSLVGMVVADPDATLLTVCENGYGKRTNFG 772 >UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chroococcales RepID=Q2JQA2_SYNJB Length = 819 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 320/846 (37%), Positives = 480/846 (56%), Gaps = 64/846 (7%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + +++ E++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG ++ Y+K A Sbjct: 1 MIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 60 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDV+GKYHPHGD AVYD +VRM Q FS RY LV G GNFGS+D D AAMRYTE RL Sbjct: 61 RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 120 Query: 128 AKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A+++H L+ + +E VDF+ N+DG++ P V+P ++P LL+NGSSGIAVGMATNIPPHN Sbjct: 121 AELSHTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHN 180 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV++G LA ID D+S E L+ IPGPDFPT I +GI AY TGRG + +R A Sbjct: 181 LGEVVDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQGIRAAYLTGRGSITLRGVA 240 Query: 247 EVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 E + R +++ E PYQVNKA IEK+AEL + R+ GI+ LRDESD+ G+R Sbjct: 241 RFEEIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIR 300 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +V+E+KR+A + VL LY T LQ +FG ++AL +G+P+ ++LK+I+ F++ R + Sbjct: 301 VVVELKREANPQAVLQQLYKLTPLQSNFGAILLALVNGEPRQLSLKEILQHFLQFREATL 360 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 R EL++ + +A + + +ALA+++ +IEL+R AP AK L Sbjct: 361 NRMFRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTR--------- 411 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 T QQA+ IL + L++LTGLE E+L E+ +L Sbjct: 412 -------------------------LGCTPQQAETILAMPLRRLTGLERERLHQEHAQLQ 446 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI------TANSADINLEDLITQ 536 +I EL +L +L+ +++EL +++ FGD RRT+I A A I + + Sbjct: 447 TRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDPRRTQILSASELEAEVAQIPSGEETEE 506 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ++ + +GYV+ PL R + A R ED + L IL ++ Sbjct: 507 THFLLQFTRKGYVRRLPLPS-----RRSRSNPAQRELGEDVLVGLECVTLEQEILVLTAG 561 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G+ +++ + +P +T +RG P+V LLP E I A + + + + G +K Sbjct: 562 GKAFTLPIAGIPLSTGSSRGVPLVTLLP--NPEPIVATFTLDPDPGKASLVVLSRQGRIK 619 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVRFKESSVRA 713 + L E L G +KL +GDEL L + + V+L ++ G+V+R + Sbjct: 620 RLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPL 679 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 MG G +RLG +++V + + G ++ A++ GY KR ++ E P R G + Sbjct: 680 MGRAAMGSPALRLGRTERIVGMALVPSQGILVLASRLGYLKRLSLEEIPILERGQVGAPA 739 Query: 774 IKVTERNGLVVGAVQVDDCDQ------IMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 ++R ++VG V + + + +IT++ + +EI + R+ G +L++ Sbjct: 740 FHFSDRGDVLVGLVGLPPELERPSHLQLDVITESEQVYSFSPAEIPLQSRSGGGSLLVK- 798 Query: 828 AEDENV 833 E V Sbjct: 799 --GERV 802 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 7/219 (3%) Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL 687 + + I E EE + T G V++ L R+ A + + D L+G++ Sbjct: 492 EAEVAQIPSGEETEETHFLLQFTRKGYVRRLPLP---SRRSRSNPAQRELGEDVLVGLEC 548 Query: 688 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG-DKVVSLIVPRGD---GA 743 + E E+++ +A GK + + ++ GV + L + +V+ D + Sbjct: 549 VTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPNPEPIVATFTLDPDPGKAS 608 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 803 ++ ++ G KR A+AE ++ V+ +K + G +++ T G Sbjct: 609 LVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYSVVLATSGGR 668 Query: 804 LVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 ++R V +I ++GR G +R E +VG+ V Sbjct: 669 VLRLDVQQIPLMGRAAMGSPALRLGRTERIVGMALVPSQ 707 >UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae RepID=A7HL65_FERNB Length = 823 Score = 866 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 363/844 (43%), Positives = 540/844 (63%), Gaps = 45/844 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 S+ + +E+EL SYL Y+MSVI+GRA+PDVRDGLKPV RR++Y+M LG NK Sbjct: 15 SNEQNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNK 74 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KK+AR+VG+V+GKYHPHGDS++Y+ +VRMAQP+ +RY LV+GQGNFGSID D AAMR Sbjct: 75 PFKKTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMR 134 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL KIA E++ D++K+TV +DN+DG+ + PDV+P K+PNLL+NG+SGIAVGMATN Sbjct: 135 YTEARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATN 194 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IP HNL +V++ +AYI + DIS+E L++ I GPDFPT II G+ GI E Y TG+G Sbjct: 195 IPTHNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGIIIGKSGIREMYITGKGGFT 254 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 IR +AE++ + K +++II+ EIPY ++KA LI++IA+ ++E+ + + LRDESDKDG+ Sbjct: 255 IRGKAEIKHEKK--KKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGL 311 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRRE 360 R+VIE D EV+LNNLY +T LQ F N + + QP++MNLK +I A+V+HR E Sbjct: 312 RVVIEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFE 371 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV +RT + ++ RAHI+E L A ID ++ +IR + +EA + LV Sbjct: 372 VVRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLV--------- 422 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++E+QA+A+LD+RL +LT LE + L EY++ Sbjct: 423 -------------------------DILQMSEEQAKAVLDMRLGRLTNLETQNLQQEYRD 457 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI---TANSADINLEDLITQE 537 LL ++ + +L + D++ EVI EELE +++++GD R+TEI + + +DLI + Sbjct: 458 LLVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGDPRKTEITDLEETATKFDKKDLIPNK 517 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 D+V+TL+ +G++K + + QRR GKG A + E+D I +++ + H L F+S G Sbjct: 518 DIVITLTKKGFLKLMDIDAFRTQRRNGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLG 577 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 +VY ++ + E+ RG +G+PI + LE ER+ A++ +T++ +F T G VK+ Sbjct: 578 KVYEIENLDIEESNRGTKGKPINKYIKLENGERVLAMVDITDYVGE--LFFVTKKGVVKR 635 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRAMGC 716 T L +F + + G AI DGDEL+ V + E V++ + G +RF VR MG Sbjct: 636 TSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTMGR 695 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 N GVRGIRL EGD+V+S V D G ILT T+NGYGK T V++Y +SR G+ +I Sbjct: 696 NAAGVRGIRLREGDEVISSTVLENDNGYILTITENGYGKLTEVSDYRKQSRDGLGIKNIG 755 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 E+ G +VG V+ ++I++ T G ++ +VS+I R QGV ++ A+ + V Sbjct: 756 EIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLADGDIVAD 815 Query: 836 LQRV 839 + Sbjct: 816 FAVI 819 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 92/207 (44%), Gaps = 11/207 (5%) Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT-HDHILCFSSRGR 598 + ++ +G VK L +++ KG A K+ D + +L N+ + +L + G Sbjct: 624 LFFVTKKGVVKRTSLEDFK--NITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGM 681 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + ++ R A G V + L + + + + + + + T NG K T Sbjct: 682 SIRFGIEEVRTMGRNAAG---VRGIRLREGDEVISSTVLEN--DNGYILTITENGYGKLT 736 Query: 659 VLTEFNRLRTAGKVAIKLVDGDE---LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 ++++ + G + + ++ ++GV +G++E++LF+ +G ++FK S + Sbjct: 737 EVSDYRKQSRDGLGIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRS 796 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDG 742 GV+ + L +GD V V G+ Sbjct: 797 RTAQGVKVMNLADGDIVADFAVIGGEE 823 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 8/221 (3%) Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI--KLVDGDELIGV 685 +E T V T G +K + F R GK I L++ D + + Sbjct: 502 EETATKFDKKDLIPNKDIVITLTKKGFLKLMDIDAFRTQRRNGKGVIGANLMEDDIISQI 561 Query: 686 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRGD- 741 + + + F++ GKV + + T G + I+L G++V++++ Sbjct: 562 IYSKLHSKTLFFTSLGKVYEIENLDIEESNRGTKGKPINKYIKLENGERVLAMVDITDYV 621 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 G + T+ G KRT++ ++ + +KG+ +I + + LV + + +++ T Sbjct: 622 GELFFVTKKGVVKRTSLEDFKNIT--SKGIRAITFKDGDELVSVLRINSESNTVLISTKL 679 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 G +R + E+ +GRN GV IR E + V+ + Sbjct: 680 GMSIRFGIEEVRTMGRNAAGVRGIRLREGDEVISSTVLEND 720 >UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ27_9GAMM Length = 823 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 342/847 (40%), Positives = 510/847 (60%), Gaps = 47/847 (5%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 + I ++SS+ DYAMSVI RALPD RDGLKPVHRR+LY+M+ LG A+KKSAR Sbjct: 16 LELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHKKSAR 75 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VVGDV+GKYHPHGDSA YD+ VRMAQ +++R+ L+DGQGNFGSIDGD+AAAMRYTE+RL+ Sbjct: 76 VVGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDGDNAAAMRYTEMRLS 135 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 K+ L AD++K TVDF DN+DGTE+ P+V+P PNLLVNGS GIAVGMAT++PPHNL Sbjct: 136 KLGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVPPHNLR 195 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV 248 E + LA++D+ +I+ + +H+PGPDFPT I++ G +A TGRG V +R++ V Sbjct: 196 ETADAFLAWLDNPEITTREIAQHMPGPDFPTGGILHDLDGYIQALDTGRGAVKLRSQWTV 255 Query: 249 EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK 308 E D G +++ +IPY VNKA+L+E+IAELV+EK++EG++ LRDES+K G+RIV+E+K Sbjct: 256 E-DRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKGIRIVLEIK 314 Query: 309 RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 R+ E + L + TQL+ S N++AL P + ++D+ F HR EV+ RRT F Sbjct: 315 REFEAEAIAFQLVTMTQLETSVRYNIMALVGQTPMQLGVRDLFEHFRAHRIEVIQRRTQF 374 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 +L +A DR HILE L +AL +D I IR + EA+ L+ Sbjct: 375 DLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLI----------------- 417 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 L + QAQAILD++LQKLTGL+ + + DE+ L ++A+L Sbjct: 418 -----------------DLLGIDVTQAQAILDMKLQKLTGLQIQDIRDEHDRLTAEVADL 460 Query: 489 LRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGY 548 IL ++R +E++R EL + +Q ++R TEI + + ++ DLI +EDV++ + QGY Sbjct: 461 RDILARSERQVEIMRTELLDLCDQHANERCTEIDTSLSKVSAADLIPEEDVMLIGTQQGY 520 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 +K + Q RG KG+S + E+D + ++HD ++ + G+V+++K Y +P Sbjct: 521 LKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTFHAGHSHDTLIALTDSGQVHAIKAYDIP 580 Query: 609 EATRGARGRPIVNLLPLEQDERITAILPVTEFEE-GVKVFMATANGTVKKTVLTEFNR-L 666 + G +GR N+ + + A+L V E + + TA G VK+T L+ ++ Sbjct: 581 DTGLGNKGRHYRNVFEGVEG-NVVAMLTVDGLESVTHSLVIFTAQGLVKRTPLSAYSNAT 639 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGE--DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 R G I LV+GD ++ ++ E + V++ + K +RF RA+G + GVR + Sbjct: 640 RRGGIQGISLVEGDSIVCARVSKDEPNESVIVAADNAKAIRFGMEEARAIGRTSRGVRAM 699 Query: 725 RLGEGDKVVSLIVPRGDG----AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 L E +VV+ + D ++ ++ G GK T +E+ +SR KGV S +R+ Sbjct: 700 NLSEDARVVAGDIIHADDLEKAHLMVVSEKGLGKATPASEFRLQSRGGKGVTSYTPNKRS 759 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G VV A + + +++ D G R S++ GR T G +IR NV+ + Sbjct: 760 GPVVAATVLFEGADVVLFNDQGGANRIAGSDVPHNGRATTGSAIIRNGSVRNVLAV---P 816 Query: 841 EPVDEED 847 PV+E+ Sbjct: 817 PPVEEDQ 823 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 98/247 (39%), Gaps = 10/247 (4%) Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR--TAGKVAIKLVDGDELIGV 685 D ++ + E + + T G +K+ + NR T G+ + + + D + Sbjct: 494 DTSLSKVSAADLIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTF 553 Query: 686 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDK--VVSLIVPRGDGA 743 D ++ + G+V K + G G + EG + VV+++ G + Sbjct: 554 HAGHSHDTLIALTDSGQVHAIKAYDIPDTGLGNKGRHYRNVFEGVEGNVVAMLTVDGLES 613 Query: 744 I----LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ-IMMI 798 + + T G KRT ++ Y +R G+ I + E + +V V D+ ++ +++ Sbjct: 614 VTHSLVIFTAQGLVKRTPLSAYSNATRRG-GIQGISLVEGDSIVCARVSKDEPNESVIVA 672 Query: 799 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEG 858 D +R + E +GR ++GV + +ED VV + E+ + G Sbjct: 673 ADNAKAIRFGMEEARAIGRTSRGVRAMNLSEDARVVAGDIIHADDLEKAHLMVVSEKGLG 732 Query: 859 DDEIAPE 865 A E Sbjct: 733 KATPASE 739 >UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cyanobacteria RepID=Q2JY71_SYNJA Length = 849 Score = 864 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 324/854 (37%), Positives = 479/854 (56%), Gaps = 72/854 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + +++ E++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG ++ Y+K A Sbjct: 23 VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDV+GKYHPHGD AVYD +VRMAQ FS RY LV G GNFGS+D D AAMRYTE RL Sbjct: 83 RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142 Query: 128 AKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A+++H L+ + + VDF+ N+DG++ P V+P ++P LL+NGS+GIAVGMATNIPPHN Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV++G LA ID+ D+S E L+ IPGPDFPT I +GI EAY TGRG + +R A Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQGIREAYLTGRGSITLRGVA 262 Query: 247 EVEVD----AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 E + R +I+ E PYQVNKA +EK+AELV + R+ GI+ LRDESD+ GMR Sbjct: 263 RFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMR 322 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +V+E+KR+A + VL LY T LQ +FG+ ++AL G+P+ ++LK I+ F++ R + Sbjct: 323 VVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGKPQQLSLKQILQHFLQFREATL 382 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 R EL++ + +A + + +ALA+++ +I+L+R AP A AK L Sbjct: 383 KRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTR--------- 433 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 T QQA+ IL + L++LT LE E+L E EL Sbjct: 434 -------------------------LGCTSQQAETILAMPLRRLTTLERERLYQEQAELQ 468 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI------TANSADINLEDLITQ 536 +IAEL +L +L+ +++EL +++ F D RRT+I A +A I + Sbjct: 469 ARIAELQGLLQDRRKLLNYLKKELRHLKKTFADPRRTQILSASELEAEAAQIPGGEAGED 528 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ++ L+ +GYV+ PL + + A R ED + L IL ++ Sbjct: 529 SRFLLQLTRKGYVRRLPLPGPRS-----RSNPAQRELGEDTLVSLECVTPEQAILVLTAS 583 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF--------EEGVKVFM 648 GR +++ + +P +T +RG P+V LLP E I A P+ + + Sbjct: 584 GRAFTVPIEGIPLSTGSSRGVPLVTLLP--NPEPIVAAFPLDPVRVSGAEHSPGEASLVV 641 Query: 649 ATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVR 705 + G +K+ L E L G +KL +GDEL L + V+L ++ G+V+R Sbjct: 642 LSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLR 701 Query: 706 FKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS 765 + MG G +RLG +++V + + G ++ A+++GY KR + E P Sbjct: 702 LDAEQIPLMGRAAMGSPALRLGRTEQIVGMALLPPQGILVLASRSGYLKRLPLGEIPILE 761 Query: 766 RATKGVISIKVTERNGLVVGAV------QVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 819 + GV + + + +VG V Q+ +I ++ + EI + GR+ Sbjct: 762 QGKVGVSAFHFSNKGDGLVGLVGFPPDLAAHPHLQVDVIAESERVHSFSPEEIPLQGRSG 821 Query: 820 QGVILIRTAEDENV 833 G +L++ E V Sbjct: 822 GGSLLVK---GEQV 832 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 90/236 (38%), Gaps = 16/236 (6%) Query: 620 VNLLPLEQDERITAILPVTEF-EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD 678 +L + E A +P E E+ + T G V++ L R+ A + + Sbjct: 505 TQILSASELEAEAAQIPGGEAGEDSRFLLQLTRKGYVRRLPLP---GPRSRSNPAQRELG 561 Query: 679 GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDK------- 731 D L+ ++ + E +++ +A G+ + ++ GV + L + Sbjct: 562 EDTLVSLECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTLLPNPEPIVAAFP 621 Query: 732 -----VVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 V G+ +++ ++ G KR A+AE S+ V+ +K + G Sbjct: 622 LDPVRVSGAEHSPGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALW 681 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 +++ T G ++R +I ++GR G +R E +VG+ + Sbjct: 682 HPGHQGYSVVLATSGGRVLRLDAEQIPLMGRAAMGSPALRLGRTEQIVGMALLPPQ 737 >UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepID=C8PKZ3_9PROT Length = 914 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 382/859 (44%), Positives = 550/859 (64%), Gaps = 61/859 (7%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +EI +++EE +K+SYLDY+MSVI+GRALPD RDGLKPVHRR+LYAMN LG + YK Sbjct: 8 NQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRQPYK 67 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDVIGKYHPHGD+AVYD +VRMAQ FS+R VDGQGNFGSIDGD AAAMRYTE Sbjct: 68 KSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAAMRYTE 127 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+ +A EL+ DL+KETVDFV NYD + PDV+P ++PNLL+NGSSGIAVGMATNIPP Sbjct: 128 ARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIPP 187 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 H+L E++ G L +++++ S+E +M I GPDFPT II G++GI EAY+TGRG+V IRA Sbjct: 188 HSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIYGKKGIIEAYKTGRGRVKIRA 247 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + +E K ++ I++ E+PYQ NKARLIE+IA+LVKEK++EGIS +RDESD+DG+R+V Sbjct: 248 KTHIE--KKASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRDGIRVV 305 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KRDA+ E+VLNNL+ QT ++ +FG+ M+A+ +PKI L +++ F+ HR+ V+ R Sbjct: 306 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDGKEPKIFTLIELLKLFLNHRKTVIIR 365 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RTIFEL+KAR RAHILE L +AL NID +I++IR++ A+ L++ Sbjct: 366 RTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSR----------- 414 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + L+E Q+ AILD+RL +LTGLE EK+ +E KE+L + Sbjct: 415 -----------------------FDLSEAQSGAILDMRLSRLTGLEREKIEEELKEILAE 451 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I L IL S + + +I++EL ++++F R TEI + DI++EDLI E++VVT++ Sbjct: 452 IKRLDAILKSEELIEGIIKDELLEIKDKFKCPRITEIVDDYEDIDIEDLIANENMVVTIT 511 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H+GY+K P YE Q+RGGKG+ A ++DFI+ +NTHD ++ + RG++Y +KV Sbjct: 512 HRGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKV 571 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++PE +R A+G+ +VNL+ L DE+I AI+P T+F+ + T NG VK+T L+EF Sbjct: 572 YKIPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKSLVFFTRNGIVKRTNLSEFK 631 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR------FKESSVRAMGCNT 718 +R+ G AI L + D L+ + E + + +G + + + Sbjct: 632 NIRSLGIRAISLDEDDTLVTALIAPNSAE-EMQNYKGGALSGDDLDGGEAEEILEQTE-- 688 Query: 719 TGVRGIRLGEGDKVVSLIV-----------PRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 + I G D++ I + + AT+ G + + + R Sbjct: 689 ---QDILEGSEDEISDEISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRI 745 Query: 768 TKGVISIKVTERNGLVVGAVQVDDC-DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 +GV IK E+ V+GA + +I+ ++ G RT SE + R +GVI ++ Sbjct: 746 ARGVKGIKFKEKGDEVIGAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMK 805 Query: 827 TAE-DENVVGLQRVAEPVD 844 ++G+ V E +D Sbjct: 806 LTNRTGELIGVVMVDEEMD 824 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%) Query: 585 NTHDHILCF-SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG 643 +T++++L + +G + ++ + R ARG + + DE I A +++ +E Sbjct: 716 STNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKE-KGDEVIGAAFILSDMQE- 773 Query: 644 VKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD-GDELIGVDLTSGEDEVMLFSAE 700 + + G K+T +E+ GK + +KL + ELIGV + E ++M + Sbjct: 774 --ILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMDLMALTTS 831 Query: 701 GKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR 739 GK++R S+R G NT+GV + + D V P+ Sbjct: 832 GKMIRVDMQSIRKAGRNTSGVIVVNVEGDDVVSIATCPK 870 Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILT 746 L + E+ V+ + G + R + G + + D + S ++ Sbjct: 500 LIANENMVVTITHRGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMF 559 Query: 747 ATQNGYGKRTAVAEYPTKSRATKG-----VISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 T G V + P SR KG +I + E+ ++ D ++ T Sbjct: 560 ITDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKSLVFFTRN 619 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDE 861 G + RT +SE + + G+ I ED+ +V + P E++ G A GDD Sbjct: 620 GIVKRTNLSEFKNI--RSLGIRAISLDEDDTLVTA--LIAPNSAEEMQNYKGGALSGDDL 675 Query: 862 IAPEVD 867 E + Sbjct: 676 DGGEAE 681 Score = 45.3 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 60/147 (40%), Gaps = 14/147 (9%) Query: 494 SADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQP 553 + R M I ++ ++ + I +++ ++++S +G K Sbjct: 737 NKIRQMGRIARGVKGIKFK---------EKGDEVIGAAFILSDMQEILSVSQKGIGKRTT 787 Query: 554 LSEYEAQRRGGKGKSAARI-KEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 SEY RGGKG ++ + +++ + ++ ++ G++ + + + +A R Sbjct: 788 ASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQSIRKAGR 847 Query: 613 GARGRPIVNLLPLEQDERITAILPVTE 639 G +VN+ + + + +I + Sbjct: 848 NTSGVIVVNV----EGDDVVSIATCPK 870 >UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI1_9ZZZZ Length = 898 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 348/928 (37%), Positives = 525/928 (56%), Gaps = 109/928 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A + +I +E++ SY++YAMSVI+GRALPDVRDGLKPVHRR+L+ M+ G+ +K Y Sbjct: 1 MAENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGY 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSAR VG+V+GKYHPHGD A+YDT+VRMAQ FSLRY L+DGQGNFGSIDGD AAMRYT Sbjct: 61 SKSARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL +++ ++ D+ K+T+D N+D TE P V+P ++PNLL+NGS GIAVGMAT IP Sbjct: 121 ESRLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIP 180 Query: 184 PHNLTEVINGC-------------LAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIE 230 PHNL EV + + I ME++ GPDFPT A I+G GI Sbjct: 181 PHNLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATIHGVDGIL 240 Query: 231 EAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGIS 290 + YRTG G+ IR+ EV+ D++ R ++VH IPYQV KA +++ IAELV++ ++GI Sbjct: 241 DMYRTGNGRFQIRSDVEVQEDSRGKR--LVVHSIPYQVKKAGMLQGIAELVRKDIIKGIR 298 Query: 291 ALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI 350 +RDES K+G+R+VIE+K++A VLN LY ++LQ S+ NM+ + +G+P ++L+ I Sbjct: 299 DIRDESSKEGIRVVIEIKQNADPHAVLNQLYQSSRLQESYSANMMGILNGEPVQLDLRTI 358 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTAL 410 + +VRHR VV RRT FE KA RAHIL L A + IIE+ R + + + + L Sbjct: 359 LHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFEQYL 418 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 E + + +++QA+AI + RL +LT L Sbjct: 419 RG--------------------------DEKYPKIRRFDFSDKQAKAIAERRLYQLTKLN 452 Query: 471 HEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL 530 +++ DE K+L I + ILGS R + +I EL+ V ++ GD+RR+ I ++ Sbjct: 453 VQEVADELKKLKGAIKDYQNILGSRIRRLNIIISELDEVVDRHGDERRSRIDPMPLSMDR 512 Query: 531 EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHI 590 EDL+ ++ +V++L+ Y+++ P+ + Q RGGKG KEED +++ + D + Sbjct: 513 EDLVAEQAIVISLTRDNYIRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRL 572 Query: 591 LCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVT----EFEEGVK 645 L F+ GRVY ++ ++ P A+R RG I NLL + DE++ +ILP++ E EG Sbjct: 573 LIFTDMGRVYGLRAWETPSASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHY 632 Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG--DELIGVDLTSGEDEVMLFSAEGKV 703 + ATANG +KK+ L+E+ ++ GK A++ G D L+ V + D V+L S+ G Sbjct: 633 LMFATANGRIKKSRLSEYVKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNA 692 Query: 704 VRFKESS-----------------VRAMGCNTTGVRGIRLGEGDKVVSLIVPRG-DGAIL 745 RF + VR G + GV G++L +GD+V+ +IV D ++L Sbjct: 693 CRFMPAQKKSRVDSNSGETITTHVVRVQGRVSQGVSGMKLRKGDQVIGMIVTDDFDTSVL 752 Query: 746 TATQNGYGKRTAV---------------------------AEYPTKSRATKGVISIKVTE 778 T ++ G KR+ + Y +R T+GV ++ + + Sbjct: 753 TISRYGMAKRSRLGSGEMKPVLDDDSMPVLDEDGGLVQQRDGYRRTNRGTRGVRTMSLRD 812 Query: 779 RNGLVVGAVQVDD-CDQIMMITDAGTLVRTRVSEISIV-GRNTQGVILI------RTAED 830 +V QV D DQ+ M+T G ++R + G+ T+G ++ RT Sbjct: 813 -GDHIVSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTKGTRIMELRNADRTGYV 871 Query: 831 ENVVGLQRVAEPVDEEDLDTIDGSAAEG 858 + ++ + R+ D +D S AEG Sbjct: 872 DEIIFVARLP-------ADLVDSSDAEG 892 >UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EGN9_9CHLO Length = 963 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 319/891 (35%), Positives = 496/891 (55%), Gaps = 81/891 (9%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I + + E SYL YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG D K +K Sbjct: 106 DERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFK 165 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARVVG+V+GK+HPHGD +VYD +VRMAQ FS+ LVDG GNFGS+D D AAMRYTE Sbjct: 166 KCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYTE 225 Query: 125 IRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RL A + +AD+ + VDF + +DG++ P V+P ++PNLL+NGS+GIAVGMAT+IP Sbjct: 226 CRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSIP 285 Query: 184 PHNLTEVINGCLAYIDDED-ISIEGLMEHIPGPDFPTAAIINGRR-GIEEAYRTGRGKVY 241 PHNL EV N + + D + ++E L+E +P PDFPT II +R G +E YRTG+G V Sbjct: 286 PHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGVN 345 Query: 242 IRARAEVEVDAKTGRE-----TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 +R A VE + GR +++ IPYQ NKA L E+IA+LV + +EG+S +RDES Sbjct: 346 LRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDES 405 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 D+DGMR+V+E++R A VL+ LY++T+LQ +N+V L +PK+++L +I+ F+ Sbjct: 406 DRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLVGREPKVLSLMEIMREFLA 465 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R + V RR EL+KA R H++E A D ++ IR A A+ AL P Sbjct: 466 FRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKP-- 523 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 ++L+E+QA+A+L + L++LTGLEH+KL Sbjct: 524 -------------------------------FWLSEKQAEAVLAMPLRRLTGLEHDKLKT 552 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA----DINLED 532 E EL ++ +L +LG R++ + E + +R+ FG RRT+I ++ +N+ Sbjct: 553 EEAELTARVEDLTGLLGDRSRVIATVAREAKELRDTFGVDRRTDIDTDAQIHAKKMNVTL 612 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 + +V ++++GY+K + + Q R +G++ +++ D + ++ N D +L Sbjct: 613 DMLNSPSLVIMTNRGYIKRIDPAVFSKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLF 672 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT-----EFEEGVKVF 647 F+ RGRV++++ + +P+A+ A G P +L L + E ITA+LPV E + Sbjct: 673 FTDRGRVHAVRAFNIPQASTSALGTPFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLC 732 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 TA G +K+T +EF +R GK A+ L GD L VD+ D +++ +G V+ F Sbjct: 733 FVTARGLIKRTCASEFVGIRNNGKKALVLRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFD 792 Query: 708 ESSVRAMGCNTTGVRGIRLGEG---------------------------DKVVSLIVPRG 740 SVRA G GV+ + + Sbjct: 793 ADSVRAQGRAAAGVKAMAFKPDGLDDTSEDDDTSEALPANASAGDVEDDSEEDGEDEDAK 852 Query: 741 DGAILTATQNGYGKRTAVAEYPTK---SRATKGVISIKVTERNGLVVGAVQVDDCDQIMM 797 + + +G GKR +VA++ + R KG+ +K ++ L + + D+ + +++ Sbjct: 853 GPMLFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGSKLAALCLTGLDSDEHEHVII 912 Query: 798 ITDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 + G + R V+ I GR +GV +++ ++ + V + + + +++ Sbjct: 913 GSQGGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTVRDITLLPAELGDDE 963 >UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4N9_METEA Length = 894 Score = 841 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 346/891 (38%), Positives = 506/891 (56%), Gaps = 72/891 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + + EE++ SYL Y MS + RALPDVRDG+KPVHRR++++M ++ + KSA Sbjct: 18 VKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSA 77 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 +VVGDV+G+YHPHGD+A+YD +VRM Q +SLRY L+D QGNFGSID D AAMRYTE RL Sbjct: 78 KVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMRYTESRL 137 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++A L+ADL + VDF NYD + K P V+P + PNLLVNG GIAVGMATNIPPH+L Sbjct: 138 ERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHHL 197 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E I CL + + ++++ +M +PGPD PT +I+GR GI +A+ TGRG + + A Sbjct: 198 GETIEACLLRLANPAVTLDEIMRVMPGPDLPTGGVIHGRSGIRQAFATGRGAIRVSGVAS 257 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 VE + K GR I++ ++PY V KA +EK+AELV+EK++EGIS +RDE SDK G+RIVI+ Sbjct: 258 VE-EGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVID 316 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLKDIIAAFVRHRREVVTRR 365 V++DA VVLN L +T + +NM L G+P+ M + ++ FV RREVV RR Sbjct: 317 VRKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVRRR 376 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T+ L K R+ H L A ID I+ LIR + EA+ AL+A + A L Sbjct: 377 TMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSGEFAQLL 436 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 D + L++ Q +AIL++RL +LTGLE +K+ + +EL +I Sbjct: 437 FEVDPDV----------PVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEI 486 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTLS 544 L IL L V+R ELE ++ F D RRT I ++ D ++ EDL+ +D+VVT++ Sbjct: 487 GGHLEILNVKAVLDGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVVTVT 546 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GYVK L Y +++ ED + +V T +L F++RG ++ Sbjct: 547 AGGYVKRTDLPAYMGRQKAADEAV------EDPVATTIVCTTKTPLLFFTNRGLAHAEVA 600 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLT 661 ++LPEA RGR +VN L L+ +E + AI+ + + E + + T GT+++ + Sbjct: 601 HKLPEAAPNVRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDAS 660 Query: 662 EFNRLRTAGKVAIKLVDGD-----ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-G 715 +F R+ GKVAIKL D + +L+ V L S ED+V L S +G RF + +R M Sbjct: 661 DFARVNKGGKVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKS 720 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPR------------------------------------ 739 ++ GV GI LG DKV+S+ V R Sbjct: 721 RDSVGVAGISLGRKDKVISVSVLRHFEATGTEREAYLAGGSARTKDETTGEPATFELPSD 780 Query: 740 -------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 + IL+ T+NG+ KRT+ Y +R +GV + K+ +R G +V + V++ Sbjct: 781 RMLAMQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADRTGDLVALMPVEEQ 840 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 D +++ TDAG RT +E+ I+ R TQG + +V + ++A Sbjct: 841 DVLVITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSVVKIAAEP 891 >UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobacteria RepID=Q114B8_TRIEI Length = 873 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 318/898 (35%), Positives = 488/898 (54%), Gaps = 100/898 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L+ ++ ++ E++ SYL+YAMSVIVGRALPDVRDG KPVHRR++YAM+ LG ++ + Sbjct: 8 LSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPF 67 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +K ARVVGDV+GKYHPHGD AVYD +VRM Q FS RY L+DG GNFGSID D AAAMRYT Sbjct: 68 RKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAMRYT 127 Query: 124 EIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 E RLA I +E L+ + + VDF +N+DG+++ P V+P ++P LL+NGSSGIAVGMATN+ Sbjct: 128 ESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATNV 187 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL EV++G +A ID+ +IS + L E IPGPDFPT I GI + Y GRG + + Sbjct: 188 PPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVSTDGIIDTYTKGRGSIPM 247 Query: 243 RARAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 R A +E + + I+V E+P+QVNKA IEK A+LV ++EGI+ LRDESD+ Sbjct: 248 RGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDESDR 307 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 G+R+VIE+KR+A VVL++LY T L FG M+AL +GQP+ ++L+ ++ F+ R Sbjct: 308 SGIRVVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALVNGQPQQLSLRTLLQEFLNFR 367 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 E +TR EL+ A+ R+HI+ L AL +D +I+++R+AP AK + Sbjct: 368 EETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQE------ 421 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 L+E QA AIL + +++LTGLE +KL +E+ Sbjct: 422 ----------------------------SLGLSENQADAILAMPMRRLTGLEKQKLEEEH 453 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI---- 534 ++L+ +I EL +LG +L++ +++EL ++ ++ D RRT I N +D Sbjct: 454 EQLMGKIQELENLLGDRHQLLKALKKELRTLKRKYNDPRRTRIIDQIKLKNADDFASISQ 513 Query: 535 ----------------------------------------TQEDVVVTLSHQGYVKYQPL 554 E VV+ SH+GYV+ P Sbjct: 514 QKKYLEAGNKEIDIKTKGRVIKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPA 573 Query: 555 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 614 +E + K EDF ++ A T ++ + G+ Y +KV +P A+ + Sbjct: 574 KGFEKYKIDKKSHITME-NSEDFTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRS 632 Query: 615 ------RGRPIVNLLPLE--------QDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +G P+V LLP + E I + E +E + M T NG +K+ L Sbjct: 633 TIRNENKGVPLVTLLPPSATKEITDARKEIIIGQFILNEAKENKDLIMLTQNGKIKRLCL 692 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAMGCNT 718 ++ + +R G IKL + DEL V L ++V+L ++ G+++R + + MG Sbjct: 693 SDLSDMRNRGVTVIKLKEDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAA 752 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 G + RL + +++V + +L +Q+ YGK+ V +R G + T Sbjct: 753 QGSQATRLRKQEELVGCVTLDIGSNLLLVSQHSYGKQIPVTALRVANRGGIGQNVFQFTR 812 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 836 ++ ++ G V + ++T G + + + ++ G L++ E ++ + Sbjct: 813 QDDILAGIVASSSNVLVQVLTTDGRVFGMIADRVKVDQQDDHGHRLLKLGAKEKIIKV 870 >UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyanobacteria RepID=B7KIH9_CYAP7 Length = 848 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 305/881 (34%), Positives = 494/881 (56%), Gaps = 92/881 (10%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I P + +E++ SYL+YAMSVIVGRALPDVRDG+KPVHRR++YAM+ LG ++ Y+K Sbjct: 12 QIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKC 71 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGD AVYD +VRM Q FS RY L+ G GNFGS+D D AAMRYTE R Sbjct: 72 ARVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131 Query: 127 LAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 LA I E ++ ++ + VDF +N+D +++ P V+P ++P LL+NG SGIAVGMATNIPPH Sbjct: 132 LAPIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPH 191 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+++G +A ID + E L E IPGPDFPT I GI+EAYRTG+G + ++ Sbjct: 192 NLGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTEGIKEAYRTGKGIIPVQGV 251 Query: 246 AEVEVDAKTGR-----ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 VE + GR I+V E+PYQVNK+ IEK+A+LV + R+EGI+ +RDESD+ G Sbjct: 252 THVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQG 311 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MR+VIE+KR+ + VL +LY QT LQ +FG+ ++AL +P ++L++++ F+ R + Sbjct: 312 MRVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNKPCQLSLRELLEEFLNFREQ 371 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 +TR+ EL +A+ R H+LE L +AL N+D +I ++R+AP AK Sbjct: 372 TLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEE------- 424 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ++E+QA +IL + +++LTGLE +KL EY++ Sbjct: 425 ---------------------------LTISEEQADSILAMPMRRLTGLEQQKLQTEYED 457 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDL------- 533 L +I +L +L LM+ ++++L ++ +FGD+RRT I +++ + + Sbjct: 458 LQQRINQLQVLLNDRIELMKSLKKDLRALKRKFGDERRTRIVSSAPTASKSEEKKGNPST 517 Query: 534 ------------------------------ITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 563 +D V+T++ QGY+ +Q +E+ + Sbjct: 518 PPQPSKTTTPSKSSEPKAKDSSSLSLFTPQPPPKDAVLTITEQGYIYWQSAAEFNSISSI 577 Query: 564 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLL 623 KG DF D ++ + +G+ Y + ++P + ++ ++NLL Sbjct: 578 KKGT--------DFPIYTQRIQQQDSLIVITDQGKAYPVSGSEIP--PQESQPCSLLNLL 627 Query: 624 P---LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGD 680 P + ++I + + + ++ + T G +K+ ++E ++ G IKL D D Sbjct: 628 PNSVQKNSQKIASYFLFPQQKNLSELILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDD 687 Query: 681 ELIGVDLTSGEDEVMLFSAEGKVVRF--KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP 738 L + LTS EV + + G+V+R ++ + MG N G + +RL G+ +V + P Sbjct: 688 RLGYLSLTSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQALRLRYGENIVGCVTP 747 Query: 739 RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI 798 + D +L TQ+GYGKR V G ++++ + + + G + +++++ Sbjct: 748 KIDDNLLLITQSGYGKRIPVNSLRITKLGEIGTMALQFSSKTDNLAGMILAKPKKEVILV 807 Query: 799 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 T+ + + + I G++ G +++ E+++ + + Sbjct: 808 TNQERRLIIPIDSVGIWGKDGVGDQVVKLKPQESILLVVAL 848 >UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q2ST76_MYCCT Length = 795 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 354/831 (42%), Positives = 514/831 (61%), Gaps = 43/831 (5%) Query: 26 MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 85 MSVIV RALPD++DGLKPVHRR++YAMN LG +K +KKSAR+VG+VIGKYHPHGDSAV Sbjct: 1 MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60 Query: 86 YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 Y+T+VRMAQ FS RY L+DG GNFGSIDGD AAAMRYTE RLAKI++ L+ D++ +TV F Sbjct: 61 YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120 Query: 146 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISI 205 +DNYD +E P + +PNLLVNG+ GIAVGMAT+IPPHNL EV++ AYID+ DI+I Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180 Query: 206 EGLME-HIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEI 264 + +++ HI GPDFPT A++ + E Y+TGRG V IRA+ + E + K R +V EI Sbjct: 181 DEILDNHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENKKHDR--FVVTEI 238 Query: 265 PYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQT 324 PYQ NKA++IEKIAELVK+K +EGI +RDES+ +G+RI+IE+K+DA +VVL+ LY T Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYT 298 Query: 325 QLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALA 384 LQ SF IN++ L++ P +++LK II +V + V+ +R+IFE K R HILEAL Sbjct: 299 ALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEALH 358 Query: 385 VALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVR 444 +AL N+D +I +I+++ T EAK L Sbjct: 359 IALDNVDDVINIIKNSKTSEEAKIQLTNK------------------------------- 387 Query: 445 DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 504 Y E+Q +AILD+RLQ+L GLE +K+ E + +++ L ++ + + V++ Sbjct: 388 ---YNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKN 444 Query: 505 ELELVREQFGDKRRTEITANS-ADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 563 +L + ++FGD RRTE+ +I E+LI ++ LS +GY++ E+ Q+RG Sbjct: 445 QLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRG 504 Query: 564 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLL 623 G+G S + D ID + D +L F++ G+VY K+Y + +R ARG PIVN L Sbjct: 505 GRGVS-VNAEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFL 563 Query: 624 P-LEQDERITAILPVTEFEEG-VKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDE 681 L +++ITAILP+ +E + T G +K+T ++EF + GK AI L + D+ Sbjct: 564 NDLTSEDKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQ 623 Query: 682 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 L+ V T+G+D + + + GKV+R KES V +GVR ++L D VV I Sbjct: 624 LVSVFATTGQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLETNDVVVGAISSFKL 683 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 I T + G K+T + +Y R KG+ + + +R G + + D I++I+ Sbjct: 684 THITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSD 743 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENV--VGLQRVAEPVDEEDLDT 850 G L++T+VS I + RN GV IR A+++ + + L+ ++ ED + Sbjct: 744 GNLIKTKVSNIPSLSRNASGVKAIRLADNQEINAITLEYRKHGLENEDFEE 794 >UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZEN0_BREBN Length = 847 Score = 824 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 310/875 (35%), Positives = 490/875 (56%), Gaps = 55/875 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L+ +I + E + + DYA VI+ RA+PD RDGLKPV RR+LYAM GN +K Y Sbjct: 2 LSNQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPY 61 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VG V+G YHPHGDSA+Y+T+VRMAQ + +R +L+ G GNFGS+D D AAMRYT Sbjct: 62 RKSAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRYT 121 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ +A+EL+ D+EK+TV F+ NYD + + P V+P++ PNLLVNG++GIAVG AT+IP Sbjct: 122 ESRLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIP 181 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 HNL EVI+ +A + + +IS++ LM+H+ GPDFPT I+ G GI +A+ TGRG+ IR Sbjct: 182 THNLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGGIVQGLSGIRKAFETGRGQFIIR 241 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK----- 298 + VE + I+V EIPY+V K++L+ +I ELV E+++EG A+RDE+ + Sbjct: 242 GKTHVEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAEQ 301 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +RIV++++++A + +LN LY T LQ+ + NM +H G + M LK ++ A++ H+ Sbjct: 302 KKVRIVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVIHEGTIRQMGLKALLGAYIDHQ 361 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 +EVVT R ++L + + R HI+E L A + + I++ I + A+AK ++ Sbjct: 362 KEVVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEK----- 416 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 Y T+ QA AIL ++L LT L+ KL E Sbjct: 417 -----------------------------YGFTDNQADAILSIQLASLTRLDIVKLEKEL 447 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQ 536 L +I EL IL S +L++VI EL +++++ ++R TEI I++ I Sbjct: 448 ATLAKEIEELKSILASEKKLIQVITGELNEIKKKYAEERLTEIQGEIEEIKIDIAMQINA 507 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ED +VTL+++GY+K +++ G +KE D + + NT L F+ Sbjct: 508 EDCIVTLTNEGYIKRTSPRSFKSV---GGTLETCGVKEGDRVRYFMETNTSHTALFFTQD 564 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G+ ++ V P+ G +VN++PLE+++RI V F++ + V+ + NG +K Sbjct: 565 GKYFATLVNAFPDDKWKDIGSALVNIIPLEKNQRIVGFTIVENFKQPLYVYHVSKNGLMK 624 Query: 657 KTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 KT L+E+ R++ VA KL G DE + V + ++ + +G +RF+ S V A G Sbjct: 625 KTALSEYETNRSSALVAAKLKGGDDEFMNVFVADEAGAILGATKDGMGIRFQRSEVSATG 684 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGA--ILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 ++GV+ I L GD V++++ + T G KRTA+ P ++RA KGV Sbjct: 685 RASSGVKAIALAPGDDVITMLPIEEVDSRAFSLLTAEGVVKRTAIGAIPLQARAGKGVQL 744 Query: 774 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 I+ + N + A+ +++ + TLV T ++ + + G LI Sbjct: 745 IRKRKNNPHELVAMFLEETVYAWTSQNEWTLVET--EQVIVNEQGGIGRQLI--EGGVKA 800 Query: 834 VGLQRVAEPVDEEDLDTI----DGSAAEGDDEIAP 864 V + + + +D T DGS G + + Sbjct: 801 VAFETILPTDEPKDEATAKGSGDGSGTAGQQKTSN 835 >UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria RepID=PARC_STAES Length = 800 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 308/837 (36%), Positives = 486/837 (58%), Gaps = 44/837 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 ++ I +++E+ + + Y+ +I RALPDVRDGLKPV RR+L+AM GN ++K + Sbjct: 1 MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VGDVIG+YHPHGDS+VYD +VR++Q + LR++L++ GN GSID D AAMRYT Sbjct: 61 RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E +L++++ EL+ D+ KETV F+ NYD T P V+P + PNLL+NGS+GI+ G AT+IP Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EVI G L YID DI+I LM++I GPDFPT II G GI++AY TG+GKV +R Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVR 240 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 +R + E ++GR+ +IV EIPY+VNK+ L++KI EL +K+V+GI +RDE+D+ G+RI Sbjct: 241 SRVD-EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRI 299 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 IE+K+DA E + N LY + LQ+S+ NMVA+ G+PK+M L++II +++ H+ EVVT Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVT 359 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RT ++L +A R HI+E L AL+ +D +I LIR++ +AK LVA Sbjct: 360 NRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE---------- 409 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 Y TE QA+AI+ L+L +LT + E L E++EL Sbjct: 410 ------------------------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEA 445 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDVVV 541 I EL IL + + L+ VI++EL ++++F R + I A I+ E ++ E+V++ Sbjct: 446 LIKELRNILDNHEALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVIL 505 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 +L+ GY+K + A G + +K+ D + + NT D +L F+++GR Sbjct: 506 SLTQHGYIKRTSTRSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLF 560 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + V++L + G+ I ++P+++DE + + +F+ MAT NG +KK+ + Sbjct: 561 IPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIKKSSAS 620 Query: 662 EFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +F R + +K+ D DELI V + + + + +G + + + + G G Sbjct: 621 QFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELSDTGLRAAG 680 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK-VTER 779 V+ I L + D VV +I+ TQ G KR RA +G+ +K + ++ Sbjct: 681 VKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKKK 740 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 836 +V V + ++ + ++ + + T G +I T + V + Sbjct: 741 PHRIVAGAVVKENHTKYIVFSQHHEEYGNIDDVHLSEQYTNGSFIIDTDDFGEVESM 797 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 99/207 (47%), Gaps = 11/207 (5%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 + T +G +K+T FN +G I L DGD L+ + + +D V++F+ + Sbjct: 499 PSEEVILSLTQHGYIKRTSTRSFNA---SGVTEIGLKDGDRLLKHESVNTQDTVLVFTNK 555 Query: 701 GKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLI---VPRGDGAILTATQNGYGK 754 G+ + + + G + + + E ++VV++ + + + AT+NG K Sbjct: 556 GRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIK 615 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 +++ +++ T R K +I++KV ++ ++ V+++ I ++T G + +E+S Sbjct: 616 KSSASQFKTT-RFNKPLINMKVKDK-DELINVVRLESDQLITVLTHKGMSLTYSTNELSD 673 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAE 841 G GV I +++ VV + V + Sbjct: 674 TGLRAAGVKSINLKDEDYVVMTEDVND 700 >UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales RepID=C7XU56_9LACO Length = 843 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 308/879 (35%), Positives = 481/879 (54%), Gaps = 62/879 (7%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSD +I + +E+ + + Y+ S+I RALPD+RDGLKPV RR+L+AMN GN ++ Sbjct: 1 MSD--NKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYD 58 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K ++KSA+ VG+V+G +HPHGDS++Y+ +VR++Q + LR L++ GN GS+DGD AAAM Sbjct: 59 KGFRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAM 118 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+KIA ++ D++K+TV+ N+D TEK P V+P +IPNL VNG++GI+ G AT Sbjct: 119 RYTEARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYAT 178 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL E+I + + + ++ LM ++PGPDFPT II G GI +AY TGRG+V Sbjct: 179 EIPPHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGGIIQGVDGIRKAYETGRGRV 238 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA +E + + GR+ IIV EIPY VNKA+L+++I +L K+VEGIS RDE+D+ G Sbjct: 239 ILRANTTIE-ELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSG 297 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RI IE+KR+A +LN L T LQ+++ NMVA+ + +P + LK + +++ ++E Sbjct: 298 LRIAIELKRNADANGILNYLLKNTDLQINYNFNMVAIDNQRPMRVGLKHYLKSYLAFQQE 357 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++TRRT F L KA+ R HI+E L AL+ +D +I+ IR + +A LV Sbjct: 358 IITRRTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNE------- 410 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y T+ QA+AI+ L+L +LT + L DE + Sbjct: 411 ---------------------------YQFTQPQAEAIVALQLYRLTNTDVTDLRDEQQR 443 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQED 538 L D IAE +IL + L V+ +E + + +QFG R+T+I + ++ + + E+ Sbjct: 444 LNDSIAEYNKILNDQNELNRVLVKEFKAIDKQFGSDRKTQIEKHIQKLTVDTKVTVPDEE 503 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 VVV +SH GY+K L ++A G ++E+D+ + A+T +H+ F+++G Sbjct: 504 VVVLVSHAGYIKRTSLRSFKASVLEENG-----LREDDYPLLIQRASTLNHLFMFTNQGH 558 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 V V++L +A G I + L DE I L E + +T++G VK+T Sbjct: 559 VIYRPVHELTDAKWKETGEHISQSIGLADDEEIIKALIFENLELPGTMIFSTSDGQVKQT 618 Query: 659 VLTEF---NRLRTAGKVAIKLVDGD-ELIGVDLTSGEDE---VMLFSAEGKVVRFKESSV 711 + + +R ++ V +KL D +I + + + + S G +RF + V Sbjct: 619 TIQDLKPGSRYKSRASVVMKLKDASARMINAEYYEPQAQNVSLTAISKHGYGLRFDVAEV 678 Query: 712 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 G T GVR I L + D++V+L+ D + TQ G K E SRA +GV Sbjct: 679 PTQGTRTAGVRAINLKDDDELVNLVQTADDDRLAIMTQRGAFKEMRANELEVGSRARRGV 738 Query: 772 ISIKVTERNGLVVGAVQVDDCDQ---IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTA 828 + + +++ + D +ITD V + + + G +I T Sbjct: 739 LVLHKLKKHPHEIVDFLAYPADYHGAFEVITDRPEFQDILVDDHHLGTAKSNGTFVIDTD 798 Query: 829 EDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVD 867 V L+R + + A EG D + D Sbjct: 799 TQGTPVTLRR--------KITVMANPAKEGSDNKNTQTD 829 >UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicutes RepID=PARC_STRPN Length = 823 Score = 812 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 307/865 (35%), Positives = 483/865 (55%), Gaps = 66/865 (7%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I +++E+ + + Y+ +I RALPD+RDGLKPV RR+LY+MN N ++K+Y+K Sbjct: 2 SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SA+ VG+++G +HPHGDS++YD +VRM+Q + R +LV+ GN GS+DGD AAMRYTE Sbjct: 62 SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL++IA L+ D+EK+TV F N+D TEK P V+P PNLLVNGS+GI+ G AT+IPPH Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL EVI+ + ID I+ LME +PGPDFPT AII GR I++AY TG+G+V +R++ Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E+E K G+E I++ EIPY++NKA L++KI ++ +V GI+ +RDESD+DG+RI I Sbjct: 242 TEIE-KLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K+DA E+VLN L+ T LQ+++ NMVA+ + P+ + + I+++++ HRREV+ R Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + F+ KA R HI+E L ++ +D +I LIR + A+AK L Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL--------------- 405 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 Y TE+QA+AI+ L+L +LT + L +E EL ++I Sbjct: 406 -------------------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKI 446 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQEDVVVTL 543 A L I+G + ++++EL V+++F R + + + +I+ LI +ED V++ Sbjct: 447 AMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSV 506 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + GY+K + A GK +++D + + A T H+L F+S G V Sbjct: 507 TKAGYIKRTSPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRP 561 Query: 604 VYQLPEATRGARGRPIVNLL-PLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 +++L + G + + E +E I + + +F++ F T G +K+ E Sbjct: 562 IHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKE 621 Query: 663 FNRLRT---AGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 F RT KL D D+++ V D+V+L S G +RF V +G Sbjct: 622 FTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL-DDVVLVSQNGYALRFNIEEVPVVGAKA 680 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GV+ + L E D + S + L TQ G KR ++ E SRA +G+ ++ + Sbjct: 681 AGVKAMNLKEDDVLQSGFICNTSSFYLL-TQRGSLKRVSIEEILATSRAKRGLQVLRELK 739 Query: 779 RNGL---VVGAVQ------------VDDCDQ-IMMITDAGTLVRTRVSEISIVGRNTQGV 822 + GAV VD DQ +++ ++ GT+ +R+ ++++ R + G Sbjct: 740 NKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGS 799 Query: 823 ILIRTAEDENVVGLQRVAEPVDEED 847 + T DE V + E V E+ Sbjct: 800 FISDTISDEEVFD-AYLQEVVTEDK 823 >UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms RepID=GYRA_MYCLE Length = 1273 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 306/730 (41%), Positives = 453/730 (62%), Gaps = 42/730 (5%) Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL +A E++ ++++ETVDF+ NYDG + P V+P++ PNLL NGS GIAVGMATNI Sbjct: 551 TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610 Query: 183 PPHNLTEVINGCLAYIDDEDISIE----GLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG 238 PPHNL E+ + +++ D E +ME + GPDFPTA +I G +GI +AY+TGRG Sbjct: 611 PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SD 297 + IR EVE D++ GR ++++ E+PYQVN I IAE V+ R+ GIS + D+ SD Sbjct: 671 SIRIRGVVEVEEDSR-GRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 + G+RIVIE+KRDAV +VVLNNLY TQLQ SFG NM+++ G P+ + L +I +V H Sbjct: 730 RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEH 789 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 + +V+ RRT + LRKA +RAHIL L AL +D +I LIR + T A+ +V Sbjct: 790 QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVE----- 844 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 L + + QAQAILD++L++L LE ++++D+ Sbjct: 845 -----------------------------LLDIDDIQAQAILDMQLRRLAALERQRIIDD 875 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 ++ +IA+L IL +R +IR EL + E++GD RRT I A D+N EDLI +E Sbjct: 876 LAKIEVEIADLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIARE 935 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 +VVVT++ GY K Y +Q+RGGKG A +K++D + V +THD IL F+++G Sbjct: 936 EVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQG 995 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 RVY K Y+LPEA+R ARG+ + NLL + +ERI ++ + +E+ + +AT G VKK Sbjct: 996 RVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRAGLVKK 1055 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAMG 715 + LT+F+ R+ G VAI L D DEL+G L + + +++L SA G+ +RF + +R MG Sbjct: 1056 SKLTDFDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMG 1115 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 T+GV+G+R D+++SL V R D +L AT GY KRT++ EYP + R KGV+++ Sbjct: 1116 RATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVM 1175 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 R G +VGA+ VD+ ++ IT G ++RT ++ GR T+GV L+ E + ++ Sbjct: 1176 YDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLA 1235 Query: 836 LQRVAEPVDE 845 + R AE + Sbjct: 1236 IARNAEESAD 1245 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 77/119 (64%), Positives = 97/119 (81%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + PV+I++E++ SY+DYAMSVIVGRALP+VRDGLKPVHRRVLYAM G ++++ Sbjct: 12 SIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSH 71 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 KSAR V + +G YHPHGD+++YDT+VRMAQP+SLRY LVDGQGNFGS D AAMRY Sbjct: 72 AKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130 >UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S991_OSTLU Length = 897 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 311/899 (34%), Positives = 477/899 (53%), Gaps = 94/899 (10%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +I V + E K+SYL YAMSVIVGRALPD RDGLKPVHRR+LY M+ LG +K ++K Sbjct: 33 EKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHRK 92 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 ARVVGDV+GKYHPHGD +VY+ +VR+AQ FS+ LVDG GNFGS+D D AAMRYTE Sbjct: 93 CARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYTEC 152 Query: 126 RLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL K+A + L+AD+ E V+F + +DG++ P+V+P ++PNLL+NGSSGIAV +ATN+ P Sbjct: 153 RLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMAP 212 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E ++ A + D S++ LM +P PDFPT ++ + G++E Y TG+G V +R Sbjct: 213 HNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGGVVTNKSGMKEIYETGKGGVTLRG 272 Query: 245 RAEVE----VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 RA +E ++ +++ EIPYQ NKARL+E+IA+ V + ++GIS +RDESD+DG Sbjct: 273 RATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRDG 332 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MR+VIE+KR VL LY++T+L+V F +N VAL +P +M L+ I+ F++ R + Sbjct: 333 MRVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNKPTVMPLRQILDEFIKFRVD 392 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + RRT F L KA+DR H++E ++ LA+ D ++++IR + A L + Sbjct: 393 TIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESH------ 446 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 L++ QA +IL + L++LTGLE +KL E KE Sbjct: 447 ----------------------------GLSDIQADSILAMPLRRLTGLEADKLDAELKE 478 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L +QIA +L + ++++V+ +E +E F RRT + + +ED +D + Sbjct: 479 LNEQIAHFQGLLSNKSKVIDVLVQEAMEAKEAFARPRRTSVEQIESLSGVEDDSPPKDNI 538 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +TLS +GYVK + AQ RG +GK ++++ D + + + D IL FS RGRV Sbjct: 539 LTLSERGYVKRICPKNFGAQNRGTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRVQ 598 Query: 601 SMKVYQLPEATRGARGRPIVNLLPL--EQDERITAILPVT----EFEEGVKVFMATANGT 654 + +P++ G P +LL ++++ +TA+L E + V M T+ G Sbjct: 599 KLSAKAIPQSELNTIGVPATSLLNTFAKRNQNVTAMLSTNMKQGEVADDQVVVMLTSQG- 657 Query: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSA----EGKVVRFKESS 710 K +V + + L GK I L GD L V D + + +G ++ + Sbjct: 658 -KVSVASAASMLGHKGKKVITLDKGDRLQQVMFARTSDHLFITGTGKAGKGLILHCRVGD 716 Query: 711 VRAMGCNTTGVRGIRLGEGDKV--------------------------VSLIVPRGD--- 741 R + + GI+ KV V + + G+ Sbjct: 717 FRVVKSACRPISGIKTMGEKKVAEAVVEDAGDDEDDDEDDGELLPPKTVGMAIVPGERMV 776 Query: 742 -------GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD--- 791 IL T+ G GK A Y R GV+ +K + + + + + D Sbjct: 777 SASEEFGPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKKGDDDALATITLVDRIG 836 Query: 792 ---CDQIMMITDAGTLVRTRVSEISIVGRN-TQGVILIRTAEDENVVGLQRVAEPVDEE 846 D++++ T G R V+++ G +I+ + + + V E Sbjct: 837 DDVTDEVLLSTTGGISNRIAVNDLPKRSDPLALGAAIIKLDATDALKSANLLPSEVASE 895 >UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZH8_ERYRH Length = 822 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 290/855 (33%), Positives = 476/855 (55%), Gaps = 53/855 (6%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + IE+ + + Y+ +I RALPDVRDGLKPV RR+LYAM N ++K Y+K Sbjct: 4 DSLIKLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYRK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SA+ VG VIG YHPHGDS+VY+ +VRM+Q + + L+D QGN GSID D AAAMRYTE Sbjct: 64 SAKTVGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRYTEA 123 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R++K++ +L+ ++++E V FV N+D P V+P + PNLLVNGS+GIA G ATNIPP Sbjct: 124 RISKLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPPF 183 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+++ + + + + S+E +M + GPDFPT AII G+ GIE+ R G+G++ +RA+ Sbjct: 184 NLNEIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGAIIQGQEGIEDIIRKGKGRIVVRAK 243 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEG---ISALRDESDKDGMR 302 AE+ + + I++ E+PY+V K+ ++ KI EL K EG + +RDESD+ G+R Sbjct: 244 AEIVENK--SMKQIVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTGLR 301 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IVI+ KRDA E +LN Y T+LQV + NMVA+ +PK+ L +++ A+++ R+EVV Sbjct: 302 IVIDCKRDANVESILNLFYKYTELQVYYNANMVAIVDQRPKVCGLLEVLDAYLKFRQEVV 361 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 R+ + + R HILE L A +N+D II +IR + +E++ ++A Sbjct: 362 LNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAE--------- 412 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + TE QA AI+DL+L +L+ + L DE+ +L Sbjct: 413 -------------------------FGFTEAQATAIVDLQLYRLSSTDINALRDEFAKLA 447 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DLITQEDVV 540 +++ L ++ + D L +I +E ++E F RR+ I A +++ ++ LIT E V+ Sbjct: 448 NELEYLDLVINNIDMLNNMIVKEFMEIKEAFDTPRRSVIEAEISELEVDHLSLITNEAVM 507 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT+S GY+K L Y G K + +ED T D+++ +SRGR Sbjct: 508 VTVSRDGYLKKVSLRSY-----GSSQKDVIALMDEDMPVFSSEVETTDYLVFVTSRGRYG 562 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + V+++ EA G I + + +E+I ++ + F+ + +TA+G +KKT + Sbjct: 563 MILVHEIDEARWRDTGSHINQYMKCDPNEKIISVFTLKSFDTYRFIVTSTASGMIKKTAI 622 Query: 661 TEFNRLRTAGKV-AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 +E RT +KL DEL+G +TS ++ ++L S EG+ +R + + +G Sbjct: 623 SELEVKRTNRLYDVMKLGKHDELVGAVITSNDEHLLLVSKEGQCMRLDLAEINPIGLRAK 682 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 GV G++L D+VVS + + ++ + KR + +RAT+G +K+ + Sbjct: 683 GVIGMKLKLNDRVVSTMGLSDESEVVFVSDRFQMKRIKAQDIAINNRATQGTSIVKMVKS 742 Query: 780 NGLVVGAVQVDD-CDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN---VVG 835 N + + V + D I++ D +++ + ++ I+ + + + +V Sbjct: 743 NPHCLAELFVGNIQDHILIYNDHTSII--PIKDVPIMSADATFSTVTTEKDFSILRPLVH 800 Query: 836 LQRVAEPVDEEDLDT 850 + +VA P E+ T Sbjct: 801 VVKVAIPKVEDKSVT 815 >UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y886_COPPD Length = 758 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 310/821 (37%), Positives = 474/821 (57%), Gaps = 73/821 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I I EELK SY+DYAMSVIVGRALPDVRDGLKPV RR++Y+M+ G+ +N YKKSA Sbjct: 4 IHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKSA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+GKYHPHGD++VYD +VRMAQ F +RY LVDG GNFGS+DGD AAMRYTE+RL Sbjct: 64 RIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVRL 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +++ L+ DL+K+TV++V N+DG+ K P+V+P P LLVNGSSGIAVG++T IPPHNL Sbjct: 124 TRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+I+ L ++ + + + LM + GPDFPT I + + + Y G+G + +R RA+ Sbjct: 184 GEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQDLVKVYEEGKGVIRVRGRAK 243 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E + + ++++EIPY VNKA L+ +IA+L++++++ G+ +RDES++ G+R+V+E+ Sbjct: 244 LE-EGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLEL 302 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K+ A +LN LY QT L+ SF INMVAL G P + L+D IA+FV R+E + RRT Sbjct: 303 KKGASFHHILNQLYEQTALENSFAINMVALKDGAPVQLTLRDYIASFVDFRKETILRRTR 362 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 + L KA R ++E + AL NID +IE+IR+A T +AK L++ Sbjct: 363 YLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQI------------- 409 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 LTE QA+A+L+++L+ L +E EK+ E + LL IAE Sbjct: 410 ---------------------GLTEVQAEAVLEIKLRSLVHMEKEKVEQELESLLKAIAE 448 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDL-ITQEDVVVTLSHQ 546 IL S +L+EVI EEL+ V++ F D+RRT I +D E + +E + L Sbjct: 449 YTEILNSETKLLEVIAEELKHVKKLFADQRRTLI--GFSDQQTETVQAAEETFFIELLEY 506 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 G ++ + + D ++ ++ G+++ + Y+ Sbjct: 507 GIIRRSKTQT--------------------NLVDFIEVQGSDPVMFLTNFGKIFCISAYE 546 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +PE+ R G + L P+ DE++ + + ++ + G K+ L + ++ Sbjct: 547 IPESQR---GVALNALFPMGNDEKVLLL-----GTQNQELIAISEKGKGKRFRL-DVEKI 597 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 + G L GD ++ V + E+++ SA+GK +R S+ G T GV+ +R Sbjct: 598 PSRGGYYFLLDPGD-MVSVIVPVTSKELVVISAQGKALRLDVESIPERGLRTGGVKVMRT 656 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 EGD+VV + I+T T+N Y KRT + E P ++R GV K E G V+G Sbjct: 657 YEGDRVVGATCLK-QKYIVTMTENAYAKRTDIDEIPKRNRGAAGVFIHKANETTGPVIGV 715 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 C++ M+ + +S+I + + + G ++RT Sbjct: 716 ----SCNENMLYRSGREWLPLSMSDIPVCSKASMGKKVLRT 752 Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 17/192 (8%) Query: 682 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 L+ G D VM + GK+ + +G +KV L++ + Sbjct: 518 LVDFIEVQGSDPVMFLTNFGKIFCISAYEIPESQRGVALNALFPMGNDEKV--LLLGTQN 575 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 ++ ++ G GKR + SR + + +V V V ++++I+ Sbjct: 576 QELIAISEKGKGKRFRLDVEKIPSRGG----YYFLLDPGDMVSVIVPVTSK-ELVVISAQ 630 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDE 861 G +R V I G T GV ++RT E + VVG + + ++ Sbjct: 631 GKALRLDVESIPERGLRTGGVKVMRTYEGDRVVGATCLKQKYI----------VTMTENA 680 Query: 862 IAPEVDVDDEPE 873 A D+D+ P+ Sbjct: 681 YAKRTDIDEIPK 692 >UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K4_SPHTD Length = 813 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 303/847 (35%), Positives = 474/847 (55%), Gaps = 59/847 (6%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I + +++ YA++V+ RALPD RDGLKPV RR+L+ M G+ N+ K Sbjct: 12 ETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPTVK 71 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SA VVGDV+ YHPHGDSAVYD VRMAQ F++RY L++GQGNFGSIDGD+AAA RYTE+ Sbjct: 72 SASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDGDAAAAYRYTEM 131 Query: 126 RLAKIAHELMADLEKETVDFVDNYDG--TEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RL+ I L+ D+E+ETV F Y P +P +IP + N SSGIAVG++T+IP Sbjct: 132 RLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPPI-CNPSSGIAVGLSTDIP 190 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL E I +A +D+ +++++ LM+ +PGPDFPT I G GI +G+G++ IR Sbjct: 191 PHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRIIGTDGIRAYLESGKGRLVIR 250 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD-GMR 302 +E + + + ++V EIP ++++RL+ I V + +V G++ +R+ESD + G R Sbjct: 251 GEVRLEEELR--QRNLVVTEIPP-ISRSRLVRSIINAVNDGKVTGVTDVRNESDDEKGTR 307 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHG------QPKIMNLKDIIAAFVR 356 IV+E++R A EVVLN LY T LQ + +NMV L QP+ + D++ + R Sbjct: 308 IVVELERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLLRYWNR 367 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 H+ +V+TRR ++LRKA++R H++E L + A+ D I+ + + A AK + Sbjct: 368 HQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEKIKVK--- 424 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 Y LT+ QA I ++ L ++T L+ K + Sbjct: 425 -------------------------------YNLTDIQADVIANMTLAQVTRLDAAKYAE 453 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLI 534 E KEL +I EL +L S + + +++EEL + ++ GD RRT I + ++ LI Sbjct: 454 EKKELTKRIKELQALLASEAKKVALLKEELTAIAQEHGDDRRTRIDREGQEEIASVASLI 513 Query: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594 + +++ S G VK P + ++ R G R + + ++ A+T D++L + Sbjct: 514 EERPILIVASQSGRVKALPENAFKRARAG-------RTARGEGLAAIVPASTLDYLLVLT 566 Query: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654 GRVY + +++P TR + G P + L+ DE + ILPV E E V TANG Sbjct: 567 RGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPDEALATILPVNELTEDRYVVWFTANGK 626 Query: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 VKKT L E+ + +AG ++L+ D ++ L+ E ++ ++ G+ +RF + VRA Sbjct: 627 VKKTSLAEYRTITSAGLNDLRLLGDDRVVAATLSESGGEYLVIASNGQALRFADDEVRAT 686 Query: 715 GCNTTGVRGIRLGEGDKVVS--LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 G + GV I L G +VV+ I P+ DG +L T G GKRTA+ ++P + RAT GV Sbjct: 687 GRDGQGVNAIALKAGAEVVTALAIPPKSDGDVLVVTAQGMGKRTALKDFPARRRATAGVA 746 Query: 773 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN 832 +I + + + GA V D +++ G ++ V ++ GR T+G L+ A++++ Sbjct: 747 AITLA-KGDRIAGAALVTPDDDVVLGAAGGQALQVTVKDLRRQGRATKGSRLLEVAKNDH 805 Query: 833 VVGLQRV 839 V + RV Sbjct: 806 VATIARV 812 Score = 96.9 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 16/240 (6%) Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 G + E E I ++ + EE + +A+ +G VK F R R AG+ Sbjct: 488 QEHGDDRRTRIDREGQEEIASVASL--IEERPILIVASQSGRVKALPENAFKRAR-AGRT 544 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR---LGEG 729 A G+ L + S D +++ + G+V + V A ++G + L Sbjct: 545 A----RGEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPD 600 Query: 730 DKVVSLIVPRG---DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 + + +++ D ++ T NG K+T++AEY T + + G+ +++ + VV A Sbjct: 601 EALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTIT--SAGLNDLRLL-GDDRVVAA 657 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 + + ++I G +R E+ GR+ QGV I VV + D + Sbjct: 658 TLSESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIPPKSDGD 717 >UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipelotrichaceae RepID=D2MM14_9FIRM Length = 830 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 277/832 (33%), Positives = 447/832 (53%), Gaps = 50/832 (6%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +E+ + + + YA +I RALPDVRDGLKPV RR+LYAM GN +K Y+KS Sbjct: 12 RYLNQRLEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKS 71 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A+ VG VIG YHPHGDS+VYD +VRM+Q + +R +D GN GSID D AAAMRYTE R Sbjct: 72 AKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPAAAMRYTEAR 131 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 LAK+ + DL+K+TV+ N+D T+ P V+P P +LVNG++GIA G ATN+PPHN Sbjct: 132 LAKVTQVMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHN 191 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 + EVI+ + I + + S+ +M+ +PGPDFPT I+ G GI EA+ TG+G++ +RA+ Sbjct: 192 INEVIDATIYRIQNAECSLNDVMDILPGPDFPTGGIVQGEEGIREAFTTGKGRIVVRAKT 251 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 E+ + + I++ EIPY+V K L++K+ E+ + V+G+ +RDESD++G+RIVI+ Sbjct: 252 --EIIQEKNLQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVID 309 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 V++D ++L + T LQV + N VA+ +P + L ++ AF+ R+EVV RR+ Sbjct: 310 VRKDVDANLILQYFFKNTDLQVYYNYNNVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRS 369 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL K R HI+E L A++ +D +I +IR + A+AK L+ N Sbjct: 370 RFELNKMEARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIEN------------- 416 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + E QA+AI+ LRL +L+ + L +E+ +L++QI Sbjct: 417 ---------------------FGFDEVQAEAIVTLRLYRLSNTDIVSLRNEFAQLVNQIE 455 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDVVVTLS 544 E IL + L ++ +EL V+E +GD RRT+I A +IN+ E +I E V++T+S Sbjct: 456 ETKSILENESVLRHLMVQELRQVKENYGDARRTKIEAKIDEINISKEAMIPSEQVMITVS 515 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GY+K L + A R G +K D + NT D +L F+S+G + V Sbjct: 516 KDGYLKRVSLRSFNAVRDQETG-----LKTGDQLIGQREVNTLDTLLLFTSKGNYAMVPV 570 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 +Q+ + G + L+ ++ +E++ + + V F+ + + T +KKT L+++ Sbjct: 571 WQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSYAWITLVTKGNKIKKTKLSDWK 630 Query: 665 RLRTAGK-VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 RT+ AI L + DE+ +T EV++ + +G +R + + + + GV+ Sbjct: 631 VERTSRLFKAINLEEKDEVCAAFMTYQSQEVLVVTKDGYALRMSQDQIPEV-KASKGVQA 689 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-KGVISIKVTERN-G 781 +++ D+V +L T KR + + RA G K + N Sbjct: 690 MKVAFEDEVAFATSVYSSDNLLFLTDTLQAKRIHLEDLRLSGRAKNMGERICKKNKSNPS 749 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 + + V + + ++ ++I + G + +D + Sbjct: 750 RLQYVLAVKTGQNLEFGGEFRQIL--STTDIPFKEKE-MGFSTLSLDKDHYL 798 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 95/234 (40%), Gaps = 14/234 (5%) Query: 612 RGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK 671 + G + + DE I + + +G +K+ L FN +R Sbjct: 479 KENYGDARRTKIEAKIDE--INISKEAMIPSEQVMITVSKDGYLKRVSLRSFNAVRDQ-- 534 Query: 672 VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV---RGIRLGE 728 L GD+LIG + D ++LF+++G + G + +R+ Sbjct: 535 -ETGLKTGDQLIGQREVNTLDTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRVDS 593 Query: 729 GDKVVSLIVPRGDGA---ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 +KV+S IV + + I T+ K+T ++++ R ++ +I + E+ V Sbjct: 594 EEKVISAIVVKNFDSYAWITLVTKGNKIKKTKLSDWKV-ERTSRLFKAINLEEK-DEVCA 651 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 A +++++T G +R +I V + ++GV ++ A ++ V V Sbjct: 652 AFMTYQSQEVLVVTKDGYALRMSQDQIPEV-KASKGVQAMKVAFEDEVAFATSV 704 >UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID=Q5MZD4_SYNP6 Length = 858 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 297/890 (33%), Positives = 460/890 (51%), Gaps = 98/890 (11%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 + A I P + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+LYAM+ LG ++ Sbjct: 8 NGADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRP 67 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 ++KSARVVGDV+GKYHPHGD AVYD +VR+ Q FS RY L+ G GNFGSID D AAMRY Sbjct: 68 FRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRY 127 Query: 123 TEIRLAKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 TE RLA ++H L+ ++ +ETVDFV N+D +++ P V+P ++P LL+NG SGIAVGMATN Sbjct: 128 TETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATN 187 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL E+++ +A ID +S L+ ++PGPDFPT + G +GI +AY GRG + Sbjct: 188 IPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILDAYLEGRGSIP 247 Query: 242 IRARAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 +R A +E + R IIV E+PYQV+KA IEK+A+LV + +++GI+ +RDESD Sbjct: 248 VRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESD 307 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 ++GMR+VIE++RDA + VL LY +T LQ +FG ++A+ GQP+ ++LK ++ F+ Sbjct: 308 REGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSLKQLLEQFLSF 367 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R + RR EL + R ILE L +L+++D +IE++R +P A+ L + Sbjct: 368 REGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQVH---- 423 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + L E+QA A+L + ++++T LE E+L E Sbjct: 424 ------------------------------FDLNERQADAVLSMPMRRITSLEQEQLQQE 453 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI---------------- 521 L +Q A L +LG L++ ++++L ++ +FG RT + Sbjct: 454 AANLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFGSPHRTRLPEIPPEAIAAPRQVTA 513 Query: 522 -----------------------------TANSADINLEDLITQEDVVVTLSHQGYVKYQ 552 +SA + QE + LS + ++ Sbjct: 514 PVAPISAPTPATAGPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAA 573 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 +E E + G DF L A+ +L ++ GR Y + ++ Sbjct: 574 SATELEPWLKAKSGAQERT----DFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPG-- 627 Query: 613 GARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK 671 PI NLLP Q I A L + E + ++ G VK+ LTE + G Sbjct: 628 -----PIANLLPTGRQSTAIAATLLLPLASEERSLLPLSSQGRVKRLALTELAEISNRGL 682 Query: 672 VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG-VRGIRLGEGD 730 +KL + + + L + + EV+L S+ G+++R S + + G R +RL EG+ Sbjct: 683 QLLKLAEEEIIQAACLCAPQQEVLLGSSGGRLLRLSLSELPLASRISRGQPRLLRLREGE 742 Query: 731 KVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD 790 + + + +L + G KR + G + + T++ ++ + Sbjct: 743 QPLGCLSLPSGQDLLLVSTLGLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIALLPAP 802 Query: 791 DCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 + +D R +S I++ G + +G L E + + Sbjct: 803 SQGLAIFASDQRLWQR-SISTIAVTGTDAEGQTLFNLRSTETLQSATTLE 851 >UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q98RX7_GUITH Length = 877 Score = 789 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 295/854 (34%), Positives = 506/854 (59%), Gaps = 46/854 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 ++ I ++ E+ SY++YA+SVI GRALPD+RDGLKPVHRR+L+AM L Sbjct: 59 TNDKTRIINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEA 118 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 Y+K ARVVG+V+GKYHPHGD+AVYD++VRM+Q FS+R +L+ G GNFGSID D AAMR Sbjct: 119 PYRKCARVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMR 178 Query: 122 YTEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 YTE +L+ ++ + L+ +L+ +TV++V N+DG+ P +MP+ IP++L+NGSSGIAVGMAT Sbjct: 179 YTECKLSNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMAT 238 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +IPPHNL E++ CLA ID+ +I+ + L++++P PDFPT +I G ++ Y G + Sbjct: 239 SIPPHNLGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLIIGNNSCKDLYEKGISSI 298 Query: 241 YIRARAEVEVD---AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 +R + VE K + +I+ EIP+Q+NK+ LI K+A+LV K ++GIS +RDESD Sbjct: 299 ILRGKINVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESD 358 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 + G+RIVIE+KRD ++ + ++ LQ++F M+ + QP ++NLK+I++ F+ Sbjct: 359 RKGIRIVIEIKRDYDPIKIVKIILKKSSLQITFSSYMLCIVDKQPILVNLKEILSLFLHF 418 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 RR+++ + FEL+ + +IL+ ++++L ID IE I+ + EAK L+ Sbjct: 419 RRKIIRKNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILME----- 473 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + L+++Q++AIL+L+L++LT LE +K+ ++ Sbjct: 474 ------------------------------FGLSQEQSEAILNLQLRRLTKLESKKIDND 503 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 ++ + EL IL S + +I+ +++ + E +G R+T + + + +E+L T E Sbjct: 504 FEITKSSLNELKCILSSNILIDGIIKNQIKNISEIYGFPRKTLLINSINENIIEELETIE 563 Query: 538 DV-VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + V + Q Y+K L +E+Q RG KGK I + D I N D ++ SS Sbjct: 564 NYESVIMITQYYIKKMFLESFESQTRGTKGKRGLIISDGDEISHFFSCNNRDDLIAISSG 623 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G Y +KV ++P + R ++G PI+++L ++ +I++I+ + E + + T G +K Sbjct: 624 GIAYKIKVSRIPISKRNSKGTPILSILKGLENNQISSIIATSNCETEKFLVLLTQKGLIK 683 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKES--SVRAM 714 +T ++ FN + + G + + L + D L V +D V++ + +GK++RF S +++ Sbjct: 684 RTSISNFNNISSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKST 743 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGD---GAILTATQNGYGKRTAVAEYPTKSRATKGV 771 G + G++ I L D + + I+ T+ GYGKR V E + R KG+ Sbjct: 744 GRTSKGIKSIDLDSNDIISDFDIIPSQAITNFIILLTEMGYGKRIKVTELKIQKRGKKGI 803 Query: 772 ISIKVTER-NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 I + E N ++ + + ++I++ T G +V+ ++S+I++ +N++G+I+ R E Sbjct: 804 KVISLRENVNDYLISSRFCIENEEILISTSYGNVVKQKISDIAVQKKNSKGIIIQRLTEG 863 Query: 831 ENVVGLQRVAEPVD 844 + V + + ++ Sbjct: 864 DKVSKISIINSVIN 877 >UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae RepID=D2REE0_ARCPR Length = 738 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 339/820 (41%), Positives = 481/820 (58%), Gaps = 91/820 (11%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 E+ +I EELK +YLDYAMSVIVGRALPDVRDGLKPV RR+LYAM +G +K + K Sbjct: 3 EVLIRDIAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKC 62 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVG V+G YHPHGD+ VY+ +VRMAQ FS+RY L+DGQGNFGSIDGD AAMRYTE R Sbjct: 63 ARVVGHVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECR 122 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L +IA +++ D++K TVDF N+D +++ P V+P KIPNLL+NG +GIAVGM TNIPPHN Sbjct: 123 LTEIAEKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHN 182 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 + EV +G +AYI + +ISIE LM I GPDFPT +I GR GI EAYRTG+GK+ +R + Sbjct: 183 IREVCDGIIAYIKNPNISIEELMNFIKGPDFPTGGVIVGRDGIIEAYRTGKGKIILRGKV 242 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 +VE D II+ EIPY VNKA+L+EKIA+L+K+ ++ +RDESD++G+R+VIE Sbjct: 243 DVEED------KIIIREIPYMVNKAKLVEKIADLIKKDKLLA-KTVRDESDREGIRVVIE 295 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K D L LY T L+V+F + M+AL + +PK++NLK++IA +V HRREVV R+ Sbjct: 296 LKED--PYSALKKLYDHTPLKVTFNVVMLALVNNEPKLLNLKELIAHYVNHRREVVRRKA 353 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 +EL+KA +R HI+E L A+ +D +I LI+ + + AK L+ Sbjct: 354 EYELKKAEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMK-------------- 399 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 L +TE+QA+AIL LRLQ LT LE+E L+ E+ EL +I Sbjct: 400 --------------------LLRITEKQAEAILQLRLQMLTRLEYESLMKEFNELKGRID 439 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 EL IL R+ E+I EEL V+ +FGD RRTEI L++++ + V VTL Sbjct: 440 ELKSILADPKRVDEIIVEELREVKRKFGDNRRTEIIDKEI---LKEVVEEFGVAVTL--D 494 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 G +K + ++ I LL A ++ IL FSS + YS+ Sbjct: 495 GQIKRFEI--------------GKALRSNPKI--LLRAMSNLDILLFSSD-KAYSIHARD 537 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P P+ + E+ E T ++ + V + + +G +KK L EF Sbjct: 538 IPLDF-----TPLSKFISAEKVE--TGVVAKGD------VVILSKDGNIKKVRLEEFANA 584 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 + AG +A E IG + +V++ + G +VRF+ S + G + GV+ I L Sbjct: 585 KRAGIIA------GENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEYGRSAKGVKAITL 638 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 EGD++ + + +GD +L T++GY K+ + E+ +R GV ++ G + A Sbjct: 639 REGDEIAWMSIGKGD-YVLILTRDGYAKKVPIDEFRLTNRGAMGVRGVR-----GEIAVA 692 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 V + ++ T G VR V I R +G ++ Sbjct: 693 EIVSE-EEYYAYTSEGNAVRINVKRIPKGDRYKKGKKIVD 731 Score = 59.9 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 31/188 (16%) Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 T +G +K+ + LR+ K+ ++ +++LFS++ K Sbjct: 489 VAVTLDGQIKRFEIG--KALRSNPKILLR------------AMSNLDILLFSSD-KAYSI 533 Query: 707 KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 766 + + + +KV + +V +GD ++ +++G K+ + E+ R Sbjct: 534 HARDIPLDFTPLS-----KFISAEKVETGVVAKGD--VVILSKDGNIKKVRLEEFANAKR 586 Query: 767 ATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 A G+I+ G +G ++ + +++ T G +VR R SEI GR+ +GV I Sbjct: 587 A--GIIA-------GENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEYGRSAKGVKAIT 637 Query: 827 TAEDENVV 834 E + + Sbjct: 638 LREGDEIA 645 >UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF72_ACHLI Length = 857 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 302/872 (34%), Positives = 475/872 (54%), Gaps = 59/872 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + +I V +E+ + S + Y+ +I RALPD RDGLKPV RR+LYAM +G +NK+Y Sbjct: 12 IEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSY 71 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+ G+V+GKYHPHGDS++Y+ +VRM+Q F +R LVD GN GSIDGDSAAAMRYT Sbjct: 72 KKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAMRYT 131 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+K A L+ D++K TV+FV N+D E+ P V+P + PNLLVNG+ GI+ G AT IP Sbjct: 132 EARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYATKIP 191 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EVI+ +A ID+ +I+ + ++++I GPDFPT I+ G+ GI+EA TG GK+ IR Sbjct: 192 PHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGGIVQGKAGIKEALTTGSGKIIIR 251 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 A+ VE +K+ ++ I++ EIPY+VNKA L+ +I L +E I +RDE+D++G+RI Sbjct: 252 AKMNVEEMSKS-QDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEGLRI 310 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 I++K+ A + + N L + LQV++ NMVA+ +P + +++ ++ H++EVVT Sbjct: 311 AIDLKKGADAQFIQNYLLKSSDLQVNYNYNMVAILKHRPVLSGAFELLKVYLEHQKEVVT 370 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 R+ +EL +A R HI++ L + + +IE IR + A++K + Sbjct: 371 NRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKR---------- 420 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + +E QA+AI+ L+L +L+ + + LLDE L Sbjct: 421 ------------------------FGFSELQAEAIVMLQLYRLSTTDIQALLDEKDTLYK 456 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA--DINLEDLITQEDVVV 541 +I L +IL + L++ I+ EL+ V+ RRTE+ A I+ +DLI+ E V Sbjct: 457 EITRLEQILSNERILLKTIKSELQEVQTLLPSPRRTELEAEIETIKIDEKDLISDEQTYV 516 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 ++ GYVK L A + G +KE D + NT D +L F++ G+ Sbjct: 517 AITKDGYVKRASLRSVVASKEVG-------LKENDAMLYEEELNTLDTLLLFTNLGQYIY 569 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + VY++ E G I N++P + E I +L V++F K+ + T G +K+ L Sbjct: 570 LPVYKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVSDFSIDQKILLTTKQGQMKQVNLA 629 Query: 662 EFNRLRTAG-KVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +F R A+KL DEL+ VD + D ++ S G V+RF + G G Sbjct: 630 DFEVSRYNRPLRAMKLSKDDELVSVDY-NQLDNIVAISKHGYVLRFDTEELPVYGLTAGG 688 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+ + L EGD+V + T G+ + V E P +R +G+I + + + Sbjct: 689 VKSMALAEGDEVAVAFYAKESDDFYFLTSRGHIIKDTVLELPKYARNRRGIILVDRIKTS 748 Query: 781 GLV------VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 V Q+ + ++ +++ L+ T VS++ V N G ++ Sbjct: 749 PHFIISASRVSKTQIKEDVKVRILSTKEALI-TTVSDLKYVA-NKYGKKMVEDGY----- 801 Query: 835 GLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEV 866 L+ +E+D + DD + +V Sbjct: 802 YLEIYPAETEEKDTPVQPKKEVKKDDTLQAKV 833 >UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=GYRA_AQUAE Length = 744 Score = 772 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 313/799 (39%), Positives = 469/799 (58%), Gaps = 73/799 (9%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + IEEE+K +Y+DYAMSVIVGRA+PDVRDGLKPV RR+LY+M +G +K +KK Sbjct: 5 ENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKK 64 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VG+ +GKYHPHGD AVY+ +VRMAQ F++RY L+ GQGNFGSIDGD AA MRYTE Sbjct: 65 SARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEA 124 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 +L+ +A E++ D++K+TVDF N+D T P+V+P+K PNLL NG+SGIAVG+AT+IPPH Sbjct: 125 KLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPH 184 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NLTEV N + + IS++ +ME + GPDFPT +I ++E Y+TGRG + ++ + Sbjct: 185 NLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKVKGK 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 A VE + GRE I++ EIPYQVNKA LI+KIA+ V+ +++ IS +RDE+DK+G+RIV+ Sbjct: 245 AHVE-KVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVV 303 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+KRDA GE VL LY T L+ F +N+V L +PK++++K ++ F++HR EV+ RR Sbjct: 304 ELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVILRR 363 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + + L+K +DR HI+E L A+ ID IIE IR + +EA+ L+ Sbjct: 364 SKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEE------------ 411 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E+QAQA+LDLRLQ+LT LE EKLL+E KEL ++I Sbjct: 412 ----------------------FGLSEKQAQAVLDLRLQRLTSLEREKLLEEEKELREKI 449 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 +++ S ++V EE E + +++GDKRRT I + + + V + Sbjct: 450 EYYKKLVASEGERIKVFIEETEELVKKYGDKRRTFIGGVKE-------VKEGSITVAVLQ 502 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 G + P+ E ++ E + S+RGRVY + Sbjct: 503 DGSI--IPVEELPLEKAPVVNILRVPFTEG--------------LFLVSNRGRVYWIAGS 546 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 Q + ++ + ++E+I +F G ++ +AT G VKK L EF Sbjct: 547 QALQGSKVSL---------KSREEKIVGAFIREKF--GNRLLLATKKGYVKKIPLAEFE- 594 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 + G IKL +GDE++ + + E ++LF+ +G+V RF V GV+GI+ Sbjct: 595 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK 654 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L + D+ L + G+ +L T G K+ + E P +R KG +V+ +V Sbjct: 655 LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG---TEVSGTKDTLVD 711 Query: 786 AVQVDDCDQIMMITDAGTL 804 + + + ++++ T G Sbjct: 712 LIPIKEEVELLITTKNGKA 730 Score = 86.5 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 13/222 (5%) Query: 623 LPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL 682 LPLE+ + IL V F EG +F+ + G V ++ KV++K + + Sbjct: 512 LPLEK-APVVNILRVP-FTEG--LFLVSNRGRVYWIAGSQAL---QGSKVSLKSREEKIV 564 Query: 683 IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742 + ++L + +G V + + G+ I+L EGD+VVS+ + Sbjct: 565 GAFIREKFGNRLLLATKKGYVKKIPLAEFE---YKAQGMPIIKLTEGDEVVSIASSVDET 621 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802 IL T+ G R +V E P + +GV IK+ E+N G + +++IT G Sbjct: 622 HILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSGLRIWNGEPYLLVITAKG 680 Query: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 + + EI R +G + + +V L + E V+ Sbjct: 681 RVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVE 720 Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 82/224 (36%), Gaps = 30/224 (13%) Query: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDE---- 681 + ERI + TE + G ++T + ++ L DG Sbjct: 458 SEGERIKVFIEETEE-------LVKKYGDKRRTFIGGVKEVKEGSITVAVLQDGSIIPVE 510 Query: 682 --------LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVV 733 ++ + + + L S G+V S G + +K+V Sbjct: 511 ELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ------ALQGSKVSLKSREEKIV 564 Query: 734 SLIVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 + +L AT+ GY K+ +AE+ K++ G+ IK+TE VV D Sbjct: 565 GAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQ---GMPIIKLTE-GDEVVSIASSVDE 620 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 836 I++ T G + R V E+ +GV I+ +++ GL Sbjct: 621 THILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGL 664 >UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIX4_9CHRO Length = 834 Score = 771 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 284/852 (33%), Positives = 449/852 (52%), Gaps = 63/852 (7%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 I P+ + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+L+AM+ LG ++ Y+K Sbjct: 19 RIQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRKC 78 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGD AVYD +VR+ Q F+ R+ L+DG GNFGS+D D AAMRYTE R Sbjct: 79 ARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETR 138 Query: 127 LAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 LA IAHE L+ ++ +TVDF N+DG+++ P V+P ++P LL+NG +GIAVGMATNIPPH Sbjct: 139 LAPIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIPPH 198 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL EV++ +A I D+S E L +PGPDFPT + G+ + YR GRG + +R Sbjct: 199 NLGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLSSGVRDTYRLGRGSIPMRGV 258 Query: 246 AEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 A +E + R +++ E+PYQ++KA IEK+AE V + ++ GI+ +RDESD++GM Sbjct: 259 AHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDREGM 318 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 R+V+E++RDA + VL L +T LQ +FG ++AL +GQP ++L+ ++ F+ +R Sbjct: 319 RVVVELRRDANADTVLAELQRRTALQSNFGAILLALVNGQPVQLSLRRLLQEFLDYRELT 378 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 + RRT LR+ DR ++E L AL + +I +I Sbjct: 379 LIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMI------------------------ 414 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 L+E+QA A+L + L++LTGLE E L E +EL Sbjct: 415 ----------TAAADAASARASLQVRLDLSERQADAVLAMPLRRLTGLEQESLRQESEEL 464 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLIT------ 535 + L +L D L+E + E +++++G RRT + D+ + Sbjct: 465 RTERTRLRHLLDDRDSLLEAMVAEFRALKKRYGTPRRTRLVEGGDDLVAQRAAAARPNAE 524 Query: 536 --QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDR-LLVANTHD 588 ++ + L+ V Q + G+ A + E + LL + Sbjct: 525 LQRQQALEALASDSRVLIQADRAVKIVTPQVLGRLHLEEPAPLGEHPAPAQLLLTVASQP 584 Query: 589 HILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTE-FEEGVKV 646 +L F++ GRV ++ ++ G P+ LP + + +LP+ E + + + Sbjct: 585 QVLAFTTDGRVAVLR-WEFAGQQPG----PLERFLPDSLEGASVMQVLPLQEGSDPHLSI 639 Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 + +++G K+ L + L +KL +G L V E+++ S+ G+++R Sbjct: 640 GLLSSDGRFKRLPLDDLQDLSGRAATVLKLKEGVTLQRVVPCRSGAELVVASSTGRMLRL 699 Query: 707 --KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTK 764 E V MG G +RL +++V G++L A++ G K+ AV Sbjct: 700 EANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVPASGSVLLASRQGQVKKLAVESLRRC 759 Query: 765 SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL 824 R G+I I+ ++R +V A+ + + ++ R +++ N G+ L Sbjct: 760 ERGDLGLIGIRFSQRGDALV-ALSSGEHPLVAVLAGENRSARLSSGSLALEDANGSGLTL 818 Query: 825 IRTAEDENVVGL 836 E++ L Sbjct: 819 -ELRPGESLRDL 829 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Query: 746 TATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 805 + +G KR + + S + +K+ E + V ++++ + G ++ Sbjct: 641 LLSSDGRFKRLPLDDLQDLS--GRAATVLKLKE-GVTLQRVVPCRSGAELVVASSTGRML 697 Query: 806 RTRVSE--ISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 R +E + ++GR QG +L+R DE +VG V Sbjct: 698 RLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVPA 735 >UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales RepID=C9Z0I9_STRSW Length = 818 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 296/795 (37%), Positives = 433/795 (54%), Gaps = 67/795 (8%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I +++ +E++ S+L+YA SVI RALPD RDGLKPVHRR++Y MN +G ++ Y K Sbjct: 17 ERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYVK 76 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA-AAMRYTE 124 ARVVG+V+GK HPHGDS++YD +VR+AQPFS+R LVDG GNFGS+ D AAMRYTE Sbjct: 77 CARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYTE 136 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+A + +E+ TVDF NYDG E+ P +P PNLLVNG+SGIAVGMATN+PP Sbjct: 137 CRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMPP 196 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EVI I + ++ LM+H+PGPD PT I G GI +AY TGRG IRA Sbjct: 197 HNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIVGLSGIRDAYATGRGTFKIRA 256 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRI 303 V + R+ +IV E+P+ V ++I KI +LV K+++GI+ ++D +D+ G+R+ Sbjct: 257 TVTV-DNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAHGLRL 315 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 VIE+K V E VL LY T ++ SFGIN VAL GQP + LK+++ ++ HR EVV Sbjct: 316 VIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRFEVVR 375 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ F K RDR H++E L AL +ID +I LIR + A+AK L+ Sbjct: 376 RRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIER---------- 425 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + L++ Q Q ILD L++LT + +L E ++L Sbjct: 426 ------------------------FALSDIQTQYILDTPLRRLTRFDRIELESEKEKLNT 461 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI--NLEDLITQEDVVV 541 +IAEL RIL S L +++ EL V ++FG +RRT + +S + + + V Sbjct: 462 EIAELTRILESDAELRKLVSGELAAVAKKFGTERRTVLLESSGTQVAAVPLQVADDPCRV 521 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 LS G + +E G+ R K D I + A + +S GR+ Sbjct: 522 LLSSTGLLARTASAEPFTADEDGR-----RTK-HDVIVSAVPATARGEVGAVTSTGRLLR 575 Query: 602 MKVYQLPEATRGAR------GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 + V LP+ + G P+ L L+ E + ++ + E G + + T G V Sbjct: 576 LNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTLDESSPG--LAIGTEQGVV 633 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIG-VDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 K+ V ++ + I L +GD ++G V+L +GE++++ + + +++R++ + VR Sbjct: 634 KRVV-PDYPSNKEE-LEVISLKEGDRIVGAVELRTGEEDLIFITDDAQLLRYQAAQVRPQ 691 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY-----------GKRTAVAEYPT 763 G G+ GI+L EG KV+S + T G K T +YP Sbjct: 692 GRPAGGMAGIKLTEGAKVISFTAIDPAVDAVVFTVAGSRGTLDDSVQTTAKLTPFDQYPR 751 Query: 764 KSRATKGVISIKVTE 778 K RAT GV + + Sbjct: 752 KGRATGGVRCQRFLK 766 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 96/261 (36%), Gaps = 23/261 (8%) Query: 625 LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIG 684 LE A +P+ ++ +V + ++ G + +T E G+ D ++ Sbjct: 500 LESSGTQVAAVPLQVADDPCRVLL-SSTGLLARTASAEPFTADEDGRR----TKHDVIVS 554 Query: 685 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT------GVRG---IRLGEGDKVVSL 735 + EV ++ G+++R + + + G + L +G+ +V L Sbjct: 555 AVPATARGEVGAVTSTGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCL 614 Query: 736 IVPRGDGAILTA-TQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ 794 + L T+ G KR P + + I + E + +V + Sbjct: 615 MTLDESSPGLAIGTEQGVVKRV----VPDYPSNKEELEVISLKEGDRIVGAVELRTGEED 670 Query: 795 IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854 ++ ITD L+R + +++ GR G+ I+ E V+ + VD + T+ GS Sbjct: 671 LIFITDDAQLLRYQAAQVRPQGRPAGGMAGIKLTEGAKVISFTAIDPAVD-AVVFTVAGS 729 Query: 855 AAEGDD---EIAPEVDVDDEP 872 DD A D P Sbjct: 730 RGTLDDSVQTTAKLTPFDQYP 750 >UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVW0_9AQUI Length = 781 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 331/841 (39%), Positives = 485/841 (57%), Gaps = 74/841 (8%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 +K SY+DYAMSVIVGRA+PDVRDGLKPV RR+LYAM +G K +KKSARVVG+V+GK Sbjct: 12 VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 136 +HPHGD AVYD +VRMAQ FS+RY L+ GQGN+GS+DGD A MRYTE +L+K+A EL+ Sbjct: 72 FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 D++K+TVDF+ N+D + P V+P+K PNLL NG++GIAVG+AT+IPPHNL EV + Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 + ++S E ++E + GPDFPT +I + I+E Y TGRG V ++A+A VE + GR Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVIENYKDIKEIYETGRGIVQVKAKAHVE-KVQGGR 250 Query: 257 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVV 316 E IIV EIPYQVNKA LI+KIA+ V+ R++ IS +RDESDKDG+RIVIE+KR+A GE V Sbjct: 251 EQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKV 310 Query: 317 LNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDR 376 L L+ TQL+ F +N+V L +G+PK++ +K+++ F++HR ++ RRT F L+KA DR Sbjct: 311 LKKLFKYTQLRKGFPVNLVVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKKAEDR 370 Query: 377 AHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEW 436 H+++ L +AL N+D +IE IR + EA+ L A Sbjct: 371 LHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQAR----------------------- 407 Query: 437 LEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSAD 496 + LTE+QAQA+LDLRL +LT LE +KL E +LL +I +++GS + Sbjct: 408 -----------FGLTERQAQAVLDLRLHRLTSLERDKLRQEEADLLQKIEYYRKVVGSEE 456 Query: 497 RLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSE 556 +++ EE E + ++FGD RRT I I L+ V + G K P+ Sbjct: 457 ERIKIFVEETENLVKKFGDPRRTFIEGIEEKIEEGSLV------VAVLENG--KVMPVEN 508 Query: 557 YEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 616 E +D L V T + + S+RGRVY + Q + ++ Sbjct: 509 -------------MPEGESPVVDILDVPFT-EGLFLVSNRGRVYWLAGSQALQGSK---- 550 Query: 617 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL 676 VN E +E I F + ++ +AT NG +KK L EF + G IKL Sbjct: 551 ---VNF--KESEEYIVGAFIRERFAD--RLLLATRNGMIKKIPLVEFE-YKAQGMRIIKL 602 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI 736 + DE++G+ + ++++F+ GKV RF + A T G +GI++ + D+V Sbjct: 603 AEDDEVVGIAQSIDMSDILMFTRRGKVARFSIREIPAATPGTKGAQGIKVEDNDEVAGAR 662 Query: 737 VPRGDG-AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 795 V R D I+ T +G KR E ++R KGV + +V + + D ++ Sbjct: 663 VIREDQPYIIVVTVDGKVKRIYQQEIGVRNRGVKGVNVLGSARE--RLVDLLPIKDELEL 720 Query: 796 MMITDAGTLV--RTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDG 853 ++ T G R R +I + R+ + E++ + + +E E+ ++ D Sbjct: 721 LITTKLGRAFYDRIRAEDIPLSKRDRLAKERWKLEEEDEIRRIVIKSEGKGYEEGESSDN 780 Query: 854 S 854 + Sbjct: 781 A 781 >UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F36_OENOB Length = 811 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 271/854 (31%), Positives = 468/854 (54%), Gaps = 52/854 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D +R I +++E+ + + Y+ +I RALPD+RDGLKPV RR+L+AMN GN + Sbjct: 1 MTDESR-IQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQ 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 AY+KSA+ VG+V+G YHPHGDS++YD +VRM+Q + +R L+D GN GSID D AAM Sbjct: 60 HAYRKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+ IA +++ DL+++ VD V N+D T P V+P++IPNLLVNG+SGI+ G AT Sbjct: 120 RYTEARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL EVIN + + S+E LM+++ GPDFPT II G GI+ AY TGRGKV Sbjct: 180 EIPPHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 Y+RA+ E++ + G++ I + E+PY+VNK+ L+ +I E+ K V GI+ +RD++ ++G Sbjct: 240 YLRAKTEIK-QLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I IE+ +DA E +L+ L+ +T LQ+++ NM A++ +P + LK ++AF+ R+E Sbjct: 299 LLIAIELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT FEL+KA+ R I+E L L+ +D ++ IR + + AK L+ Sbjct: 359 VIRRRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKK------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++ QA+AI+ L+L +LT + L +E+ Sbjct: 412 ---------------------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDR 444 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA--DINLEDLITQED 538 L QI+E IL L +V+R EL+ + +++ + RR++I + I+ +I ED Sbjct: 445 LTKQISEFNSILKETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANED 504 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V+V ++ GY K Y+A G + ++D+ L NT + F+++G Sbjct: 505 VIVQITKNGYAKRASFRSYKATDDNG-------LTDDDYPVYLAKVNTLSSLFIFTNKGN 557 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVK- 656 + +VY+L + G + + L +DE + + + ++ +++ VK Sbjct: 558 LIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQ 617 Query: 657 --KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRA 713 K L + AI + + L+ V + ++ V++ + +G + +F + Sbjct: 618 VDKNALNPTKYYKKRASKAIAIKGKNVLVSVAFAASQNHLVVMATQKGYLYKFPIGEIAL 677 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-GVI 772 M ++G + ++ + D++VS+ + + ++ + G+ K E P + + Sbjct: 678 MTAKSSGAKPAKISKKDRIVSMDLIDSEDLMVLMSDRGHSKIINPLEIPISTVNSVQKAE 737 Query: 773 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN 832 +I + + A+ ++ IT+ ++ V+ +I G + + ++ ++ Sbjct: 738 TIFMADEIIGGTQAISRSKKSELQAITNDNQVIDFSVNPNNISGLDDEFKRKVKVNKNSM 797 Query: 833 VVGLQRVAEPVDEE 846 +V + R+ + V E Sbjct: 798 IVKV-RLKQEVIEN 810 >UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L827_MAGSM Length = 754 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 302/795 (37%), Positives = 440/795 (55%), Gaps = 71/795 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MS+ +I P N+ EEL+S YL YA+S I+ R+LPDVRDGLKPVHRR+L+AM L D N Sbjct: 1 MSNTFEQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 YKKSARVVGDVIGKYHPHGD A YD +VR+AQ F++RY LVDGQGNFG+IDGDSAAAM Sbjct: 61 SPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL +A L+ DLE +TVDF+ YDG+ + P V+P + PNLL NGSSGIAVGM+T Sbjct: 121 RYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMST 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIE-EAYRTGRGK 239 N+PPHN+ E+++ CL I + SIE LM+H+P PDFPT I+ E Y GRG Sbjct: 181 NVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRGS 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 + +RAR VE D G I+V EIPYQV K+RLIE+IA+LV +++ ++ +RDESD++ Sbjct: 241 LRLRARWAVE-DLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDEN 299 Query: 300 GMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHG-QPKIMNLKDIIAAFVRH 357 +RIV+E + R E++++ L+ + L+ N+ + G +P++++LK I+ ++ H Sbjct: 300 -LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLDH 358 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R V TRR +EL+K R+R H+L+A + NID +IE+I+ PA L+A Sbjct: 359 RFVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPA---PVLMAR---- 411 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + L E QA+AIL++RL+ L LE K+ E Sbjct: 412 ------------------------------FSLDEIQAEAILNMRLRNLRKLEEMKIRKE 441 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLIT 535 +EL + L +L + + IR+EL+ R++F D RRTEI + D+++ ED + Sbjct: 442 MEELQARADLLEAMLADDKIMWKAIRDELKATRKEFADVRRTEICGSVEDVHVRPEDFVE 501 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 +E + V LS G+VK A + R K +D + R T+ + S Sbjct: 502 KEPISVILSQMGWVK--------ANKGHDVNTEVLRFKGDDLLLRSFPCYTNQSVSFISQ 553 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 G+++++ LP G P+ ++ L+ +R+ LPV +E + T G Sbjct: 554 SGKLFTILASNLPAG--KGFGEPLTSMFDLDGGDRVLWALPVDPEQE---YLLITRLGQG 608 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 + + + GK I L GD+ + + G V S +++ F M Sbjct: 609 FRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGP-WVGSISRSRRLLIFPIEQFPLMA 667 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS---RATKGVI 772 GVR +LG + VV + + + + GK+T + RA +G + Sbjct: 668 -KGKGVRVQKLGADEVVVDVTTFTDEEGFVLDS----GKKTKHVTDYDQWHGNRAGRGAM 722 Query: 773 SIKVTERNGLVVGAV 787 +G + GAV Sbjct: 723 L-----PHGFLSGAV 732 Score = 65.7 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 26/220 (11%) Query: 632 TAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 691 + P E+ + + G VK + N ++ D L+ Sbjct: 492 VHVRPEDFVEKEPISVILSQMGWVKANKGHDVNT------EVLRFKGDDLLLRSFPCYTN 545 Query: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI-RLGEGDKVVSLIVPRGDGAILTATQN 750 V S GK+ S++ A + + L GD+V+ + + L T+ Sbjct: 546 QSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWALPVDPEQEYLLITRL 605 Query: 751 GYGKRTAVAEYPTKSRATKGVISIKVTER-------NGLVVGAVQVDDCDQIMMITDAGT 803 G G R + R K +I++K ++ G VG+ I+ + Sbjct: 606 GQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGPWVGS-----------ISRSRR 654 Query: 804 LVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 L+ + + ++ + +GV + + DE VV + + Sbjct: 655 LLIFPIEQFPLMAK-GKGVRVQKLGADEVVVDVTTFTDEE 693 >UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firmicutes RepID=A9KS51_CLOPH Length = 748 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 294/781 (37%), Positives = 443/781 (56%), Gaps = 43/781 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M A I ++ EE+K+S+ +YAMSVI+ RA+PDVRDGLKPV RR+LY+M LG D Sbjct: 1 MKKEAENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPK 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K ++KSAR+VGD +GKYHPHGDS++YD +V M +P+S++ LVDG GNFGSIDGD AAAM Sbjct: 61 KPHRKSARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+ A L+ L+K V+FV N+D +EK P V+P +PNLL+NG++GIAVGMAT Sbjct: 121 RYTEARLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+PPHN +EVI G +AYID+ DI+ EGLM++IPGPDFPT I I Y TG G++ Sbjct: 181 NMPPHNPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSEDIRNIYETGEGRL 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDK 298 +RA+ E+E + GR+ I++ EIPY V NK +L+E + +L+K+K + I +RDES K Sbjct: 241 KVRAKTEIEA-SDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSK 299 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+R+VIEVK+D E +LN LY +T ++ ++G+N++A+ QP + LK+++ FV + Sbjct: 300 EGIRVVIEVKKDRDIENLLNGLYKKTSMEDTYGVNLLAVKDQQPIVFKLKNLVGEFVSFQ 359 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 E+ T+ L KA R I++ L A ID IIE++R + + +AK L+ Sbjct: 360 EELYTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEI 419 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 N R + TE+QA AIL + L KL GLE +L +E Sbjct: 420 NFKTEASR----------------KKAAKLDFTERQADAILAMPLSKLIGLEILRLHEEN 463 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 + LLD I + ILG+ L +VI+ L+ ++QF R T + +E+ + ED Sbjct: 464 QSLLDSIEQYQSILGNKKELFKVIKSNLKEYKKQFNVPRHTVLANMEIAEYVEE-VKVED 522 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + + + GY K + S +K DF+ ++ D + F+++G Sbjct: 523 IYILIDKFGYTKSVDNTSISR-------VSEDNLK--DFV-HIVKMKNTDRLCLFTAQGN 572 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 +Y +K ++P+ +G I NL ++++E + I FE + T NG +K Sbjct: 573 MYQVKAEKIPKCKIKDKGTLIHNLCKVDKEEILLYIAFEDLFESQ--LLFTTKNGFIKLV 630 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGV------DLTSGEDEVMLFSAEGKVVRFKESSVR 712 EF R A A KL + D ++ V +++ + +V+L + + + F + V Sbjct: 631 SGIEFETNR-AMISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVS 689 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 + + GV+GI L + DKV V + GK + + + RA KG Sbjct: 690 ELKKTSKGVKGITLEKKDKVAFATVALPETEFF----EYQGKELSAKKVRNRKRAAKGQK 745 Query: 773 S 773 + Sbjct: 746 A 746 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 23/219 (10%) Query: 637 VTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVML 696 V E + + G K T +R+ L D + + D + L Sbjct: 515 VEEVKVEDIYILIDKFGYTKSVDNTSISRVSED-----NLKD---FVHIVKMKNTDRLCL 566 Query: 697 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRG--DGAILTATQNGY 752 F+A+G + + K + G L + ++++ I + +L T+NG+ Sbjct: 567 FTAQGNMYQVKAEKIPKCKIKDKGTLIHNLCKVDKEEILLYIAFEDLFESQLLFTTKNGF 626 Query: 753 GKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV------DDCDQIMMITDAGTLVR 806 K + E+ +RA +IS E VV + + + +++++T+ + Sbjct: 627 IKLVSGIEFE-TNRA---MISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSLG 682 Query: 807 TRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 ++E+S + + ++GV I + + V VA P E Sbjct: 683 FPLTEVSELKKTSKGVKGITLEKKDKV-AFATVALPETE 720 >UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myxococcales RepID=Q1D9G9_MYXXD Length = 813 Score = 755 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 274/779 (35%), Positives = 423/779 (54%), Gaps = 64/779 (8%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM-NVLGNDWNKAYKKSA 67 P ++ +E + Y++YA+SVI RALPDVRDGLKPV RR+L+ M + Y+KSA Sbjct: 56 VPASLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSA 115 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 +VVG V+G+YHPHGD+++Y+ +VRMAQ FSLRY LVDG GNFGS+DGD AAAMRYTE RL Sbjct: 116 KVVGSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRL 175 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A ++ EL+ +L K+TV F YDGT + P V+P ++P LL+NG++GIAVGMATNIPPH+L Sbjct: 176 AMLSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHL 235 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARA 246 E+++ +A I++ + + L++ + GPDFPT I+N ++ + + Y +G+G + IR Sbjct: 236 GELVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEY 295 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 ++E D K G + I++ IPY VNK+ L+ K +LV+E+++ I+ +RDES KD +RIV+E Sbjct: 296 KLE-DLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKD-VRIVLE 353 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH-------GQPKIMNLKDIIAAFVRHRR 359 +K+DA E+V+ LY QT LQ +FG+N+ L P+ +NL+DI+ F+ R Sbjct: 354 LKKDANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRF 413 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 +VVT+R EL + R HILE +D +I++IR + +A L+A Sbjct: 414 DVVTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIAR------ 467 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L E Q AIL+++L KL LE + E K Sbjct: 468 ----------------------------FKLDEAQVDAILEMKLYKLARLEILVVEKELK 499 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA---NSADINLEDLITQ 536 E +I + IL +++ +R+EL ++ ++ DKRRT I + + E I Sbjct: 500 EKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYNDKRRTRIGGAGSEEMEFSAEAFIAD 559 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ED V ++ G+VK R K S R++E D + +L + +++ FS+ Sbjct: 560 EDAHVVITRDGWVKRV---------REVKDPSTTRLREGDAVMAVLAGSLKANLVLFSNF 610 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT-EFEEGVKVFMATANGTV 655 G Y + +P + G P+ + ER+ + L + K+ T G Sbjct: 611 GTAYVTRFNDVPAS--TGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKLVGVTKQGMG 668 Query: 656 KKTVLTE-FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 + +L AG+ K +GDE+IGV + D + + + + + K + V + Sbjct: 669 MRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNEL 728 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVPRG---DGAILTATQNGYGKRTAVAEYPTKSRATKG 770 GV I++ GD+VV + D + TQ G + A+Y R KG Sbjct: 729 AGPGKGVTVIKVDGGDRVVDFLAVSPAQKDAKLEFETQKGRKLHLSPAKYEVTGRGGKG 787 Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 17/215 (7%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 +E V + T +G VK+ E T +L +GD ++ V S + ++LFS Sbjct: 559 DEDAHVVI-TRDGWVKRVR--EVKDPSTT-----RLREGDAVMAVLAGSLKANLVLFSNF 610 Query: 701 GKVVRFKESSVRAMGCNTTGV-RGIRLGEGDKVVSLIVPRGD----GAILTATQNGYGKR 755 G + + V A V + + +G++VVS + ++ T+ G G R Sbjct: 611 GTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKLVGVTKQGMGMR 670 Query: 756 TAVA-EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 + +RA T ++G V D D + ++T+ + + +V+E++ Sbjct: 671 FLLEPHLEVSTRAG---RRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNE 727 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLD 849 + +GV +I+ + VV V+ + L+ Sbjct: 728 LAGPGKGVTVIKVDGGDRVVDFLAVSPAQKDAKLE 762 >UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinobacteria (class) RepID=C5CCL2_MICLC Length = 868 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 311/902 (34%), Positives = 454/902 (50%), Gaps = 110/902 (12%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I V++ EE+++S+L+YA SVI RALPD RDGLKPV RR+L+ M+ +G ++ + K Sbjct: 24 ENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRGHVK 83 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVG+V+GK HPHGD+A+YD +VR+AQPFSLR +VDG GNFGS+D D AA RYTE Sbjct: 84 SARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRYTEA 142 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R+A A L ADL++ TVDFV NYD + P V+P PNLLVNG++GIAVGMATN+ PH Sbjct: 143 RMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNMAPH 202 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL EV+ G + D + +E +M HIPGPD P+ I G G+ +AY TGRG +RA Sbjct: 203 NLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIVGLDGVRDAYATGRGTFRMRAA 262 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRIV 304 VE + R ++V E+PY V ++IE+I V K++ GI+ + D +D+ +G+R+ Sbjct: 263 VAVEQVSAR-RTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRLQ 321 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+K + VL LY T L+ +FGIN VAL GQP+ + L ++ +V HR +VV R Sbjct: 322 IELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYVDHRLDVVRR 381 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT L K RDR H++E L +AL +ID +IE+IR + A A+T L+ Sbjct: 382 RTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM------------- 428 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 G++ LT+ QA IL+LRL++LT +L E EL Sbjct: 429 ---------------------GVFDLTQVQADHILELRLRQLTKFSRIELQAERDELQAA 467 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS------------------- 525 IAEL IL S RL EV+ EL+ V ++ GD RRT + Sbjct: 468 IAELEAILASDARLREVVSAELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAGA 527 Query: 526 ADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585 A+ ++ ++ LS G + A R ++ D ++ Sbjct: 528 AEAGVDLMVPDTACWALLSTSGRLLRTADRTPIA--------PQGRRRKHDAFASVVPTT 579 Query: 586 THDHILCFSSRGRVYSMKVYQLPEATRGARGR------PIVNLLPLEQDERITAILPVTE 639 I +S G ++ ++ LP A + P L+PL + E + A++P+ Sbjct: 580 ARGEIGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL-- 637 Query: 640 FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE-DEVMLFS 698 + + TA+G VK+ L A+ L DGD ++G E D+++ + Sbjct: 638 ---DTVMALGTAHGVVKRVR--PEWPLNRQVVDAVALKDGDAVVGAAPAPDEADQLVFLT 692 Query: 699 AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSL----------------------- 735 G+++R+ S+VR G GV GIRL GD V++ Sbjct: 693 RTGQLLRYAASAVRPQGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAV 752 Query: 736 -IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE-RNGLVVGAVQVDDCD 793 + A + + G K T + EYP K R T GV + ++ + +GLV+G + Sbjct: 753 VVTVTDGEADVLGSAPGSVKVTPLGEYPAKGRGTGGVRAHRLLKGESGLVLGWIGAAPAL 812 Query: 794 QIMMITDAGTLVRTRVSEISIVGRNTQGVIL-IRTAEDENVVGLQRVAEPVDEEDLDTID 852 + AG V R+ GV + R V+ P E+D + Sbjct: 813 A---ASRAGVARALPVEYGR---RDGSGVPMDQRIEAVGAGASPDLVSAPPAEDDAVAVS 866 Query: 853 GS 854 Sbjct: 867 AD 868 >UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms RepID=C1N3Z1_9CHLO Length = 1082 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 291/797 (36%), Positives = 434/797 (54%), Gaps = 106/797 (13%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I + E SYL YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG D K +K Sbjct: 59 NERIIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFK 118 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARVVG+V+GK+HPHGD +VYD +VRMAQ FS+ LVDG GNFGS+D D AAMRYTE Sbjct: 119 KCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPPAAMRYTE 178 Query: 125 IRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RL +A + +AD++ + VDF + +DG++ P V+P ++PN+L+NGS+GIAVGMAT+IP Sbjct: 179 CRLRSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMATSIP 238 Query: 184 PHNLTEVINGCLAYIDDED-ISIEGLMEHIPGPDFPTAAIINGR---RGIEEAYRTGRGK 239 PHNL EV + Y D D +++ L++ +P PDFPT+ II +G + Y TG+G Sbjct: 239 PHNLREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATGKGS 298 Query: 240 VYIRARAEVEV-------DAKTGRETIIVHEIPYQ-----------------VNKARLIE 275 V +R A +E T + +I+ IPYQ NKA L Sbjct: 299 VTLRGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKASLCG 358 Query: 276 KIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMV 335 +IA+LV ++++G+ +RDESD+DGMR+V+E++R V LY++T+LQV +N+V Sbjct: 359 QIADLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTRTRLQVRVSVNLV 418 Query: 336 ALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 L +PK++ L DI+ F+ R E + RR EL KA R H++E A D ++ Sbjct: 419 GLIGREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPDAVVA 478 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 IR A EA+ L P + L+++Q+ Sbjct: 479 AIRAAKDGPEAQKTLQEAP---------------------------------FSLSKEQS 505 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 +A+L + L++LTGLEH+KL E +L ++ +L +L ++ + E + +R+++G Sbjct: 506 EAVLAMPLRRLTGLEHDKLRAEEADLTAKVEQLNALLSDRALVIAAVASEAKELRDKYGV 565 Query: 516 KRRTEITANSADINLEDLITQ----------EDV-------------------------- 539 +R+T I ++A + E + EDV Sbjct: 566 ERKTLIDHSAAKLAAEVAEARRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLDSLD 625 Query: 540 ---VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ++ ++ +GY+K + Q +G GK R++ D + ++ N D +L F+ R Sbjct: 626 ADNLIVMTGKGYIKRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTDR 685 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE-----GVKVFMATA 651 GRVY+++ Y +P+++ A G P +L L + E ITA+LPV G + M TA Sbjct: 686 GRVYAVRAYDIPQSSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNVGEHLVMLTA 745 Query: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 711 G VKKT ++EF + AGK A+ L GD L V+L D +M+ +G V+ F S+ Sbjct: 746 RGVVKKTPISEFANINRAGKRALGLQKGDRLKHVELVRDGDGIMVAGVDGMVLHFSMDSI 805 Query: 712 RAMGCNTTGVRGIRLGE 728 RA +GV+ ++ E Sbjct: 806 RAQSRIGSGVKAMKFRE 822 Score = 96.1 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 79/208 (37%), Gaps = 17/208 (8%) Query: 635 LPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG--DELIGVDLTSGED 692 +P+ + + M T G +K+ F+R D++ V +G D Sbjct: 619 IPLDSLDADNLIVM-TGKGYIKRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLD 677 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGV---RGIRLGEGDKVVSLIVPRG--------D 741 V+ F+ G+V + + G R ++L EG+ + +++ Sbjct: 678 TVLFFTDRGRVYAVRAYDIPQSSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNVG 737 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 ++ T G K+T ++E+ +RA K + ++ + + V D D IM+ Sbjct: 738 EHLVMLTARGVVKKTPISEFANINRAGKRALGLQ---KGDRLKHVELVRDGDGIMVAGVD 794 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAE 829 G ++ + I R GV ++ E Sbjct: 795 GMVLHFSMDSIRAQSRIGSGVKAMKFRE 822 Score = 72.2 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 17/120 (14%) Query: 741 DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD------- 793 +L T G GKR +V ++ K R G +I + E G + A+ + D Sbjct: 964 GAMVLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEE--GSRLAAMCITGVDPALREAG 1021 Query: 794 -------QIMMITDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 ++++ + AG L R V+E+ +GRN +GV L++ + + V + + E Sbjct: 1022 DAECVAEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLPVDAVE 1081 Score = 69.2 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 16/119 (13%) Query: 643 GVKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGE--------- 691 G V + T+ G K+ + +F + G AI L +G L + +T + Sbjct: 964 GAMVLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDA 1023 Query: 692 ----DEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVPRGDGAIL 745 +EV++ S G + R+ + +R G N GV+ ++L +GD V + + D L Sbjct: 1024 ECVAEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLPVDAVEL 1082 >UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicutes RepID=Q2SS33_MYCCT Length = 899 Score = 742 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 284/822 (34%), Positives = 444/822 (54%), Gaps = 53/822 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSD + EI +EE L + + YA +I RALPDVRDGLKPV RR+LYAMN L ++ Sbjct: 1 MSDKS-EIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFD 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVG+VIGKYHPHGDS++YD +VRM+Q + + LVD QGN GSIDGDSAAAM Sbjct: 60 KPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL KI++ L+ DLEK+TV F N+D +E P V+P+ PN+LVNG++GIA G AT Sbjct: 120 RYTEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+PPHNL+E+I+ + I + +I+I+ +++ + GPDFPT AII ++GI EA+ TG+GKV Sbjct: 180 NMPPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I ++ E + I++ EIPY+V K L++KI +++ GI +RDE+D+ G Sbjct: 240 IISSKWHQE------KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKG 293 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIVIE+ A E V L+ T L VS+ N + + QPK + L DII A++ H +E Sbjct: 294 LRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKE 353 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V +RT F L K R I++ L AL+ +D +I++IR + +A LV Sbjct: 354 VFIKRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLV--------- 404 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + T Q+ AI+D+RL +LT + KLL E E Sbjct: 405 -------------------------ISFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTE 439 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQED 538 L+D+I + IL L I LE V++QFG KR++++ D++ +++I +++ Sbjct: 440 LIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKE 499 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + + +S GY+K + GK K D V + DH++ S + Sbjct: 500 INLWISKDGYIKVIDNNILNKNELSSFGK-----KPNDMWISQGVCSNLDHLILISDQAN 554 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF-EEGVKVFMATANGTVKK 657 YS+ +Y++ + +G I ++ + +E I L + EF + + T NG +K+ Sbjct: 555 YYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEFINSTQHLLLVTKNGLIKR 614 Query: 658 TVLTEFN-RLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRAMG 715 T +++ ++ +K+ D D L+ DL S + + + G VR+ + Sbjct: 615 TQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIVTKNGYAVRYNIEDIPIQS 674 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 + GV+ L + D+++S + + + I+ T K+ P R KG+ + Sbjct: 675 TISKGVKAANL-KDDQIISALSLQTNKDIIIFTNKNNYKKIDQNLIPIYIRPKKGIRILV 733 Query: 776 VTERNGLVVGAVQVDDCDQIM-MITDAGTLVRTRVSEISIVG 816 ++N V + + I+ ++ + V ++ Sbjct: 734 EKKKNKEEVIFSFAINKEMILSILDQNDQITDINVDDLKYTN 775 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 64/391 (16%), Positives = 133/391 (34%), Gaps = 36/391 (9%) Query: 458 ILDLRLQKLTGLEHEK-LLDEYKELLDQIAELLRILGSADRLMEVIREELELVR---EQF 513 I+D + ++L ++ K + YKE+ + E L + +E+++ ++ + E Sbjct: 330 IVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN--LNKTNLRLEIVKGLIKALSILDEVI 387 Query: 514 GDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK 573 R++E N D I + + + Y + + Sbjct: 388 KVIRKSE--------NRIDAINNLVISFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTE 439 Query: 574 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITA 633 D I + + L + +V + R ++ +V L ++Q E I Sbjct: 440 LIDKIKKYQEILNDN--LVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVII- 496 Query: 634 ILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 693 E + +G +K + N L + D I + S D Sbjct: 497 --------EKEINLWISKDGYIKVI---DNNILNKNELSSFGKKPNDMWISQGVCSNLDH 545 Query: 694 VMLFSAEGKVVRFKESSVRAMGCNTTGV---RGIRLGEGDKVVSLIVP----RGDGAILT 746 ++L S + + GV + +++ +V +L Sbjct: 546 LILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEFINSTQHLLL 605 Query: 747 ATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVR 806 T+NG KRT +++ TK K +K+++ + LV + ++T G VR Sbjct: 606 VTKNGLIKRTQISDLETKI-FNKSFKIMKISDDDSLVYADLISSKTSYCCIVTKNGYAVR 664 Query: 807 TRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 + +I I ++GV +D+ + L Sbjct: 665 YNIEDIPIQSTISKGVKAANLKDDQIISALS 695 >UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=cellular organisms RepID=Q7V9E4_PROMM Length = 829 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 287/851 (33%), Positives = 464/851 (54%), Gaps = 62/851 (7%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + P+ + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+L+AM+ LG ++ Y+K Sbjct: 4 ERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 ARVVGDV+GKYHPHGD AVYD +VR+ Q FS R+ ++DG GNFGS+D D AAMRYTE Sbjct: 64 CARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTET 123 Query: 126 RLAKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLA IAH L+ ++ +ETVDF N+DG+++ P V+P ++P LL+NG SGIAVGMAT+IPP Sbjct: 124 RLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIPP 183 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EV++G +A I D+S + L+ IPGPDFPT I GI E Y GRG + +R Sbjct: 184 HNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMRG 243 Query: 245 RAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 A VE + R ++V E+PYQ++KA IEK+A+LV ++ GI+ +RDESD++G Sbjct: 244 VAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDREG 303 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIV+E++RDA E VL +L+ +T LQ +FG ++AL +GQP+ ++L+ ++ F+ +R Sbjct: 304 MRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYREL 363 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V RRT L K + R ++E L AL + +I +I+ A A A+ L+ Sbjct: 364 TVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQ------- 416 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 L E+QA A+L + L++LT LE L E KE Sbjct: 417 ---------------------------LDLNEKQADAVLAMPLRRLTSLEQSSLRQEAKE 449 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--------D 532 L ++ +L +L + + ++EV+ +EL ++++F + RRT + D+ E Sbjct: 450 LQEKQEQLQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDLVAERAANQRPNA 509 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLL-VANTH 587 + ++ + L G + Q S+ + G+ A ++ + RL+ Sbjct: 510 EVQRQQALSALPSDGRILIQQDSQVKVMSPQILGRLHLNEACKLSDGPSPARLILPIEPA 569 Query: 588 DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF 647 +L ++ GRV ++ ++ G+ R + L + E + I P+ ++ + + Sbjct: 570 PRLLAVTNNGRVALVR-WEFAGQQPGSLERFLPGGL---EKETLINIFPLP-VDQNLSLG 624 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 + +++G K+ + E L +KL DG L + D+V+L S G+V+R Sbjct: 625 LLSSDGRFKRLPIEEVMELSGRAATIVKLKDGVILKSAFICKANDDVILASNIGRVIRIN 684 Query: 708 ESS--VRAMGCNTTGVRGIRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAVAEYPT 763 ++ + MG G +RL + VV + P + +L AT+ G + V+ Sbjct: 685 VNNDSMPLMGKLAQGPMTMRLLPEEMVVGAVSCPPNCESTVLLATRLGKFAKILVSSIRI 744 Query: 764 KSRATKGVISIKVTERNGLVVGAVQVDDCDQIM-MITDAGTLVRTRVSEISIVGRNTQGV 822 R G I + + + + V + + ++++ +++ G R ++ + + Sbjct: 745 CQRGDLGEIGLTIKDSSRDQDRVVDICNGNRLVGLVSSQGRHGRIEAGKLELTIPIKPSL 804 Query: 823 ILIRTAEDENV 833 ++ ++E + Sbjct: 805 NIVELKDNEEI 815 >UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma RepID=A5IXX2_MYCAP Length = 861 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 269/864 (31%), Positives = 450/864 (52%), Gaps = 47/864 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 ++DL +I N++ + + Y+ VI RALPDVRDGLKPV RR+LY+M LG N Sbjct: 9 LNDLLSKIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNN 68 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K +KKSARVVGDVIGKYHPHGD+++YD +VRM Q + + + LV+ GN GSID D AAAM Sbjct: 69 KPFKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAM 128 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+RL++IA+ ++ D+ K TV F N+D +EK P VMP IPNLL+NGS+GIA G AT Sbjct: 129 RYTEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFAT 188 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +PPHNL E+++ +A + + I + L + I GPDFPT II G GI EA+ G+G++ Sbjct: 189 EMPPHNLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGGIIYGTEGIHEAFERGKGRI 248 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + +R V D+K + I + EIPY V K++L+ +I +V + V G+ ++D++D++G Sbjct: 249 TLASRYNVYTDSKY--KYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNG 306 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+I + ++A V++N L+ +TQ+++ + N V + + PK + + ++ A+++H ++ Sbjct: 307 INILITLDKEADENVIVNYLFLKTQMRIYYNYNNVVIDNYTPKTLGISALLDAYLKHVKD 366 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + + F+L K + R I+ D +IE+IR + Sbjct: 367 IKIKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSK---------------- 410 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + + T QA AI +LRL KL+ + L E +E Sbjct: 411 -----------------QGVIDNLMSAFDFTLNQATAIAELRLYKLSKTDEHAFLIEKEE 453 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQED 538 L ++I + +L +D + + + ++ +FG RRT I A IN EDL+ +E Sbjct: 454 LEEKIKQCELLLNDSDEFNKYLIALFKDLKSKFGRARRTSIENEQIKASINQEDLVKEEQ 513 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V + +S GY+K YE+ G IKE+D I A++ D +L F++ G Sbjct: 514 VFLGISKFGYIKKVSKKIYESNLINTYG-----IKEDDNILFYDNASSLDKLLLFTNFGN 568 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + V+++ E+ G + + + L E + + + V++F+ V + T G KK Sbjct: 569 YAYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVSAIKVSDFDSSNYVCLFTKKGQGKKV 628 Query: 659 VLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 +L EF+ R + VA+KL DELIG L++G +V+L + + E+ V G Sbjct: 629 LLKEFDVSRFSKTFVAMKLKSDDELIGAKLSNGLKDVLLITKNNFASLYSENEVPIYGLK 688 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 + G + L D++ + V + +++ N K V+E S+A KGV + Sbjct: 689 SNGNKACYLANYDELSAFAVVSSNDSVVLINANNRAKVVNVSEITKVSKANKGVALFAKS 748 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL-IRTAEDENVVGL 836 N + + +I+++ + G ++ + + + + + V + Sbjct: 749 RTNSPIKQCDSLQASSKILIVNNQGQAHFEKIQDYA---KAAYAKFINFDVDDLRTVSLI 805 Query: 837 QRVAEPVDEEDLDTIDGSAAEGDD 860 + + + + D +A + Sbjct: 806 SNYSSDSENSNTHSYDKESAVEEQ 829 >UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family protein n=37 Tax=Clostridium RepID=Q0SRA9_CLOPS Length = 979 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 308/770 (40%), Positives = 448/770 (58%), Gaps = 56/770 (7%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I + +EE + +YL YA+ V RALPDVRDGLKPVHRR+LY +L +K Y Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGD++GKYHPHGDS+VYD +V +AQ FS R L+DG GN+GSIDGD AAAMRYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL+ I+ E++ D+EK VD V NY +E P V+P + PNLLVNG+ GIAVG++TNIPP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EVI+G LAYID+ +I+ LM +I GPD PT ++ G + + AY TG GKV +RA Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLRA 250 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKR----VEGISALRDESDKDG 300 +A++E + GR I++ E PY+ NKAR+++ I+++ +KR ++GI +RDESD+ G Sbjct: 251 KAKIET-LENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 301 MRIVIEVKRDAV---GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 +R VIE K+ + VL LY +T LQ + NMVAL G+P+ M LK II+ +V H Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 +++VVTRRT EL A R HI+E A+ +D +I IR + + +A LV Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVLK---- 425 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + T+ QA+AIL+L L +LTGLE + E Sbjct: 426 ------------------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKE 455 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLIT 535 +KEL +I L +IL + L+ VI++EL+ V E +GD+RRT + + ++ I+LE+LI Sbjct: 456 HKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEELIV 515 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 EDV+VTLS++G++K PL Y R ++ +E D++ L+ +NT D + F+ Sbjct: 516 AEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTD 572 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLL-PLE-QDERITAILPVTEFEEGVKVFMATANG 653 +G VY +K + + +G + +L+ L +DE+I A+ + F TANG Sbjct: 573 KGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANG 632 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVRFKESS 710 +KKT L +F + +AIKL + D L V L +DE V + + G E Sbjct: 633 LIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPE 691 Query: 711 VRAMGCNTTGVRGIRLGEGDKVVSLIVPRG---DGAILTATQNGYGKRTA 757 + N GV+ + L G+++ S+ I+ + G K + Sbjct: 692 LEFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFS 741 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 17/227 (7%) Query: 582 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEF 640 + N+ +I+ FS++G+V+ Y L I +L+ E+DE I + P+ EF Sbjct: 751 VKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESN----ISDLVDGFEKDELIIKVAPINEF 806 Query: 641 E---EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLF 697 E + V+ + G VKKT L EF DEL+ VD+ V+L Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKDELVNVDINFENATVILV 866 Query: 698 SAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG----DGAILTATQNGYG 753 + G ++F +++ MG +GV GI L + +KV+ V D L A + Sbjct: 867 TKNGMGIKFLATAINPMGRIASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEAYNDYKK 926 Query: 754 KRTA-----VAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 795 + T+ V E K +A + IK+ R G + + D I Sbjct: 927 ELTSNYEKLVLESKQKEKAEVNIEDIKLQNRAGRGSSLMILVLEDYI 973 >UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rhodothermaceae RepID=Q2S2H4_SALRD Length = 777 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 273/802 (34%), Positives = 419/802 (52%), Gaps = 88/802 (10%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNV-LGNDWNKAYKKSARV 69 + + E + YL+YA+SVI RALPD+RDGLKPV RR+L+AM L +K ++KSA V Sbjct: 7 IPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSATV 66 Query: 70 VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 129 VG+ +GKYHPHGD A+YD +VRMAQ FSLR LVDG GNFGS+DGDSAAAMRYTE +L Sbjct: 67 VGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKLQP 126 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 +A E++ L ETVD+ DN+DG+ + P V+P ++PNLLVNG+SGIAVGMATNIPPHNL E Sbjct: 127 LAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNLGE 186 Query: 190 VINGCLAYIDDEDISIEGLM-EHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAE 247 V++ L I++ ++ L+ +HI GPDFPT I+N + + E Y TG G + +R Sbjct: 187 VVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGAYR 246 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 + G+ I+ +PY V+K++++E+IA+ + E+ V +S +RDES D +RIV+E+ Sbjct: 247 TK-----GKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDD-VRIVLEL 300 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHH------GQPKIMNLKDIIAAFVRHRREV 361 KR + E + L+ T+LQ F +N+ L PK ++L+ I+ F+ R +V Sbjct: 301 KRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLDV 360 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 VTRR EL + R HILE +D IE+IR + A+A L+ Sbjct: 361 VTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR-------- 412 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + L E+Q AIL+ +L KL+ +E E + DE E Sbjct: 413 --------------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELGEK 446 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADIN--LEDLITQEDV 539 + + R+L D ++++EL+ +R+++ D+RR+ + AD+ ED I EDV Sbjct: 447 RARAEGIRRLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPGADMEYTEEDYIVDEDV 506 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V ++ G+VK Q A R ++ D + L +T + F++ G Sbjct: 507 HVIVTRDGWVKRQGTYS---------DLDAIRTRDGDEVGWALAGSTRATVGFFTNYGTC 557 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE-------------------- 639 Y+ ++ ++P G P+ L + E + ++ + Sbjct: 558 YTTRITEIPST--TGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDP 615 Query: 640 ----FEEGVKVFMATANGTVKKTVLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEV 694 + V + G + L + + G+ ++L DGDE+ V L G++ + Sbjct: 616 DDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDENI 675 Query: 695 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV-PRGDGAILTATQNGYG 753 L S +G+ + F V GVR IRL + D+V+ + R + T NG Sbjct: 676 CLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDRVLDFALSTRARDGLTVETNNGRE 735 Query: 754 KRTAVAEYPTKSRATKGVISIK 775 + ++ +R KG + IK Sbjct: 736 EIVRTTKFDATNRGAKGTLVIK 757 Score = 58.8 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 39/239 (16%) Query: 647 FMATANGTVKKT-VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 + T +G VK+ ++ + +RT DGDE+ S V F+ G Sbjct: 508 VIVTRDGWVKRQGTYSDLDAIRTR--------DGDEVGWALAGSTRATVGFFTNYGTCYT 559 Query: 706 FKESSVRAMGCNTTGV-RGIRLGEGDKVVSLIVPRGDG---------------------- 742 + + + + V + +G+ VV ++ Sbjct: 560 TRITEIPSTTGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDPDDPD 619 Query: 743 -----AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMM 797 ++ ++ G R + Y S +T G +++ E V + I + Sbjct: 620 APDQPYVVAISKGGQATRFTLDGYLEPSIST-GRKYMRL-EDGDEVARVHLARGDENICL 677 Query: 798 ITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 + G + V ++S+ +GV IR +++ V+ D ++T +G Sbjct: 678 ASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDRVLDFALSTRARDGLTVETNNGREE 736 >UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pulmonis RepID=Q98QI8_MYCPU Length = 939 Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 243/770 (31%), Positives = 414/770 (53%), Gaps = 43/770 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + ++ ++++ + + Y+ +I RALPD RDGLKPV RR+LY+M L +K + Sbjct: 12 INEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLKLWNDKPF 71 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VGDVIGKYHPHGDS++Y+ +VRMAQ + + L+ GN GSID D AAAMRYT Sbjct: 72 KKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSIDDDPAAAMRYT 131 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RLA+I++ ++ +EK V F N+D +EK P V+P IPNLL+NG+ GIA G AT +P Sbjct: 132 ESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFATEMP 191 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL E+++ +A I + +E L+++I GPDFPT +I+G GI +A++ GRG++ + Sbjct: 192 PHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGGVIHGLSGIVQAFKEGRGRISLT 251 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + E + I++ +IPY K++++ I E++ ++++GI + D+SD+DG+ I Sbjct: 252 CKY--EHINLPDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRDGISI 309 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 I++++ A E ++ L+S+T+LQV + N +A+ +G P ++NL +++ ++ H + + Sbjct: 310 AIKLEKKANHESIMKYLFSKTELQVFYNYNNIAIKNGSPTLLNLNELLDIYIEHLKTINV 369 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 + F+L KAR R ++E D II IR + Sbjct: 370 KILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGK------------------- 410 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + ++ +++QA AI +LRL +L+ + +E +EL+ Sbjct: 411 --------------KGVIEDLIRIFAFSQRQATAIAELRLYRLSQTDFYLYQNEKEELIK 456 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 QI + +IL S + L + L+ +++ + R+T+I ++E+L+ E V Sbjct: 457 QINDFEKILNSDNELKTYLVNILKKIKKTYPTPRKTQIIDEELKRNYDIEELVVDEKCYV 516 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 +LS GY+K ++ G +KE D + L A T D +L FS G Sbjct: 517 SLSQDGYLKRVSSKTFKTNDFASFG-----LKENDNLSFLSKATTKDKLLIFSDHGNYAI 571 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + +Y++ E + G I + + E+I +L V EF + + + T G K+ L Sbjct: 572 IPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNEFSQDYYISLVTQKGLGKRVSLN 631 Query: 662 EFNRLRTAGK-VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +F R + AI L D D L+ V ++ G+ ++LF+ VV+F E ++ + G Sbjct: 632 KFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSEDALPVISTKGQG 691 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 + I+L EG+KV ++ + + ++ T + + + RA KG Sbjct: 692 NKMIQLSEGEKVSAMSITKTTDNLILITNKNNLIKVPTSHFKFTPRAAKG 741 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 71/513 (13%), Positives = 169/513 (32%), Gaps = 53/513 (10%) Query: 343 KIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALA-------VALANIDPII- 394 I L I+ AF R ++ +E D+ IL + +ID II Sbjct: 230 VIHGLSGIVQAFKE-GRGRISLTCKYEHINLPDKNEILITQIPYGSVKSKIVRDIDEIIV 288 Query: 395 ----ELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL 450 + I+ ++ +A + + + + + Sbjct: 289 NQKIDGIKEVLDQSDRDGISIAIKLEKKANHESIMKYLFSKTELQVFYNYNNIAIKNGSP 348 Query: 451 TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVR 510 T +LD+ ++ L + + L + + ++ + L + I +++ Sbjct: 349 TLLNLNELLDIYIEHLKTINVKILEFDLNKARLRLEVVEGFL-----RVAQITDQIIATI 403 Query: 511 EQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAA 570 D ++ I EDLI + S + L Y + + Sbjct: 404 RASNDGKKGVI---------EDLIR----IFAFSQRQATAIAELRLYRLSQ------TDF 444 Query: 571 RIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDER 630 + + + + + N + IL + + Y + + + + P + +E Sbjct: 445 YLYQNEKEELIKQINDFEKILNSDNELKTYLVNI-----LKKIKKTYPTPRKTQIIDEEL 499 Query: 631 ITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 690 + + +G +K+ F +T + L + D L + + Sbjct: 500 KRNYDIEELVVDEKCYVSLSQDGYLKRVSSKTF---KTNDFASFGLKENDNLSFLSKATT 556 Query: 691 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG---IRLGEGDKVVSLIVPRG---DGAI 744 +D++++FS G + + GV + +K++ ++V D I Sbjct: 557 KDKLLIFSDHGNYAIIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNEFSQDYYI 616 Query: 745 LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 804 TQ G GKR ++ ++ ++ + + + + +V I++ T+ + Sbjct: 617 SLVTQKGLGKRVSLNKFLITRQS--KISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNV 674 Query: 805 VRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 V+ + ++ QG +I+ +E E V + Sbjct: 675 VKFSEDALPVISTKGQGNKMIQLSEGEKVSAMS 707 Score = 42.6 bits (99), Expect = 0.071, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 511 EQFGDKRRTEITANSADINLEDLI-----TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGK 565 +F R+++I+ + + L+ + ++ ++ V G+ Sbjct: 631 NKFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSEDALPVISTKGQ 690 Query: 566 GKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPL 625 G ++ E + + + + T D+++ +++ + + R A+G+ I L L Sbjct: 691 GNKMIQLSEGEKVSAMSITKTTDNLILITNKNNLIKVPTSHFKFTPRAAKGKRISEELKL 750 Query: 626 EQDERITA 633 + + A Sbjct: 751 GYQKIVLA 758 >UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Actinomycetales RepID=D1BTH4_XYLCX Length = 855 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 296/840 (35%), Positives = 426/840 (50%), Gaps = 101/840 (12%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +I +++ E++SS+L+YA SVI RALPD RDGLKPV RR+LY M +G ++ Y Sbjct: 14 DEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMADMGLRPDRPYV 73 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KS+RV+G+V+GK HPHGD A+YD +VR+AQ FSLR LVDG GNFGS+D D AA RYTE Sbjct: 74 KSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLD-DGPAAPRYTE 132 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLA + + A L+++ VDFV NYD P+V+P+ IPNLLVNG+SGIAVGMATN+ P Sbjct: 133 ARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGIAVGMATNMAP 192 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EV+ + + ++E +M +PGPD PT I G GI +AYR+GRG RA Sbjct: 193 HNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIVGLDGIRDAYRSGRGTFRTRA 252 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRI 303 A +E R I + E+PY V +++EKIA+ VK K+++G++ ++D +D+ GMR+ Sbjct: 253 TARIENITPR-RRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDLTDRTHGMRL 311 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+EVK E VL LY T L+ SFGIN VAL GQP+ + L +++ +V HR EVV Sbjct: 312 VVEVKTGFDPEAVLEQLYRTTPLEDSFGINNVALVGGQPRTLGLLELLRVWVEHRIEVVR 371 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT + L K ++R H++E L +A+ +ID +I++IR + A+ L+ Sbjct: 372 RRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLM------------ 419 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 ++ L+E QA ILDL+L++LT +L E EL Sbjct: 420 ----------------------DVFDLSEPQATYILDLQLRRLTKFSRIELEKEQSELEK 457 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA-------------------N 524 +IA L ILGS L V+ E+ V +G RRT + Sbjct: 458 EIAALEEILGSDAVLRRVVSTEMGDVAATYGTPRRTVLLDSAGGATTSAAAAPGGARGRK 517 Query: 525 SADINLEDLITQEDVVVTLSHQGYVKY----------------QPLSEYEAQRRGGKGKS 568 A+I+LE I V LS G + L G G S Sbjct: 518 PAEISLE--IADAPTHVLLSATGLLARTAVAPAAAPTASEGDQLDLDGVALGAPGAPGAS 575 Query: 569 AA-----RIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG------ARGR 617 A R D + ++ + I ++ GR+ + +LP + G Sbjct: 576 GAVSRHGRRHAHDALRGDVMTTSRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSGGI 635 Query: 618 PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV 677 P+ L+ L E A++ + ++ + + TA G VK+ ++ + I L Sbjct: 636 PVSELVELAPGEEALAVVSLA--DDAPTLALGTAGGVVKRVAASDVPSNKDE-WTVIGLK 692 Query: 678 DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV 737 DGD ++G +DEV+ S++ ++ + S+VR G G+ GI L G VV V Sbjct: 693 DGDSVVGAAPAGDDDEVVFISSDSSLLHYAASAVRPQGRAGGGIAGISLAAGQTVVFFGV 752 Query: 738 PR-------------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 R G L G K T YP K RAT GV S + + +V Sbjct: 753 ARAAVRPELTVVTVGGSAGQLPGVGGGSVKVTPYELYPGKGRATGGVRSHRFLKGEDRLV 812 Score = 59.9 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 15/205 (7%) Query: 680 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN------TTGVRG---IRLGEGD 730 D L G +T+ ++ L + G+++R + ++ + G+ + L G+ Sbjct: 588 DALRGDVMTTSRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSGGIPVSELVELAPGE 647 Query: 731 KVVSLIVPRGDGAIL-TATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV 789 + ++++ D L T G KR A ++ P ++ VI +K VVGA Sbjct: 648 EALAVVSLADDAPTLALGTAGGVVKRVAASDVP-SNKDEWTVIGLK---DGDSVVGAAPA 703 Query: 790 DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLD 849 D D+++ I+ +L+ S + GR G+ I A + VV VA +L Sbjct: 704 GDDDEVVFISSDSSLLHYAASAVRPQGRAGGGIAGISLAAGQTVVFFG-VARAAVRPELT 762 Query: 850 TIDGSAAEGDDEIAPEVDVDDEPEE 874 + + G V P E Sbjct: 763 VVTVGGSAGQLPGVGGGSVKVTPYE 787 >UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula baltica RepID=Q7UU73_RHOBA Length = 825 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 286/822 (34%), Positives = 434/822 (52%), Gaps = 69/822 (8%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 L EI + + + YL+Y++SVI RALPDVRDGLKPV RRVLY M++L D + Sbjct: 25 ESLLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSA 84 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 + K A+VVGDV+GKYHPHGDS++Y+ +VRM+Q FSLR ++DG GNFGSIDGD+AAAMR Sbjct: 85 KHSKCAKVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMR 144 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE R+ IA E++ADL TV F NYDGT + P V+P+++P+LLVNG++GIAVGMATN Sbjct: 145 YTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATN 204 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLM--EHIPGPDFPTAAII-NGRRGIEEAYRTGRG 238 IPPHNL EV N L + + +I L+ + I GPDFPT I N + + E Y TG G Sbjct: 205 IPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTG 264 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 + +R AEV ++TG +T+ + EIP+ VNKA ++E+IAELV ++ + +RD S + Sbjct: 265 TIKLRGVAEVAEKSRTG-DTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTE 323 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH------GQPKIMNLKDIIA 352 D +R+ + +K++A + VL LY T LQ +F +N+ L G PK + LK+I+ Sbjct: 324 D-IRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILW 382 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 F+ R +V+T R ELR R HILE LA+ +D II++IR + A+A ++ Sbjct: 383 YFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMK 442 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 A R + L +Q AIL+L+L +L LE Sbjct: 443 RFPVKELTPAQARRKTRASN----------------GLDAEQTDAILELKLYRLARLEIN 486 Query: 473 KLLDEYKELLDQIAELLRILGSA------DRLMEVIREELELVREQFGD----KRRTEIT 522 +LDE K+ ++ E+ ++L +I+EEL+ + +G+ +RR+ I Sbjct: 487 VVLDELKKKRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIV 546 Query: 523 ANSADIN--LEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDR 580 + ++ ED I ED V ++ G+VK Q + S +R+++ D + Sbjct: 547 VPTEEVEYTEEDFIVAEDCHVMVTVDGWVKRQ---------KQIADPSKSRLRQGDAVLA 597 Query: 581 LLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT-- 638 + NT + FSS G Y+ ++ +P + G PI L + ERI A L + Sbjct: 598 CVAGNTRTTLAFFSSLGVCYTARMIDIPAS--TGFGEPIQKLFKFKDGERIIAALSMDPR 655 Query: 639 -----------EFEEGVKVFMATANGTVKKTVLTEFNRLRTA-GKVAIKLVDGDELIGVD 686 + A+ +G + L F T G+ ++ G ++ V Sbjct: 656 ILGDISEDPKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVV 715 Query: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAIL- 745 +G + V+ SA+ + + + + GV ++L DK++ GD +L Sbjct: 716 PIAGTETVLAVSADARAMVCPADEINYLSGAGKGVLLLKLAASDKLLGFKPSTGDRDLLN 775 Query: 746 TATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787 T G K + A+Y T SR +G+ ++NG + V Sbjct: 776 VVTNRGAKKTVSTAKYRTTSRGGRGIE----LQKNGKIAEIV 813 >UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=A9F3U1_SORC5 Length = 800 Score = 723 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 268/788 (34%), Positives = 417/788 (52%), Gaps = 74/788 (9%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM-NVLGNDWNKAYKKSAR 68 ++ +E + YL+YA+SVI RALPDVRDGLKPV RR+LYAM + L + Y+KSA Sbjct: 35 DTSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAA 94 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VVGDV+GKYHPHGD A+YD +VR+AQ F +R L+ G GNFGS+DGD+ AAMRYTE +L Sbjct: 95 VVGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLR 154 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 +A EL+++L + TVDF NYDGT P V+P++ PNLLVNGS GIAVGMAT+IPPHNL Sbjct: 155 PLALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLG 214 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIING-RRGIEEAYRTGRGKVYIRARAE 247 EVI+ C+A I++ +++ L+ ++ GPDFPT ++ ++ +E Y G+G + +R + Sbjct: 215 EVIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQ 274 Query: 248 VEV-DAKTG-RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 +E D K G I++ IPY + + ++EKIAE++ K++ + +RDES + +RIV+ Sbjct: 275 LEEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGE-VRIVM 333 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH------GQPKIMNLKDIIAAFVRHRR 359 E+KR A ++V+ LY QT L ++ +N+ L P+ + L +I+ F+ R Sbjct: 334 ELKRGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRY 393 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 VTRR FEL + R R ILE +D +I +IR + A+A L+ Sbjct: 394 ATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKR------ 447 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L E+Q AIL+L+L +L LE + + Sbjct: 448 ----------------------------FTLNEEQTDAILELKLYRLARLEILLVQKDLG 479 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQE 537 E + + +L S + ++R+EL ++ +G+KRRT++ + + ED I E Sbjct: 480 EKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGSYGEKRRTKVVGSIDEPEYQAEDFIVAE 539 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 D V LS QG+VK R K ++ RI+E D + + +T + FS+ G Sbjct: 540 DANVILSAQGWVKRV---------REVKDLASTRIREGDSVLAAVAGSTRSTVAFFSNLG 590 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAIL-------------PVTEFEEGV 644 Y +++ +P++ G P+ L L ER+ A++ P + E Sbjct: 591 ACYVCRIHDVPQS--TGYGDPVQKLFKLADGERLIALMSFDPRALDVPAQTPDSAEPEPP 648 Query: 645 KVFMATANGTVKKTVLTEFNRLRTA-GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 T G + L T G+ KL +GDE++ V G D V+ S++ Sbjct: 649 FALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLFVHAVDGADRVLCASSDAWA 708 Query: 704 VRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTA-TQNGYGKRTAVAEYP 762 + + + G +R+ EG+++V + G ++T T+ G A ++ Sbjct: 709 LSVAVEELALLSGPGKGSVVMRVAEGERLVGAALALGPSDVITVETEKGKTLEIAASKIA 768 Query: 763 TKSRATKG 770 + R T+G Sbjct: 769 GQ-RGTQG 775 Score = 70.3 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 76/425 (17%), Positives = 149/425 (35%), Gaps = 71/425 (16%) Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED 532 +L E EL +I L D L EVIR R++E A++A+ ++ Sbjct: 399 RLEFELGELRRRITILEGFEKIFDALDEVIR-----------IIRKSEGKADAAEKLMKR 447 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 E+ + + L Q+ G+ ++ A+ E Sbjct: 448 FTLNEEQTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEG----------------L 491 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF----- 647 S + + + +L E G+ G ++ ++ + E++ + Sbjct: 492 LRSDAKRWGIVRDELVEIK-GSYGE--------KRRTKVVGSIDEPEYQAEDFIVAEDAN 542 Query: 648 -MATANGTVKKT-VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 + +A G VK+ + + R + +GD ++ S V FS G Sbjct: 543 VILSAQGWVKRVREVKDLASTR--------IREGDSVLAAVAGSTRSTVAFFSNLGACYV 594 Query: 706 FKESSVRAMGCNTTGV-RGIRLGEGDKVVSLIVPRGDGAI----------------LTAT 748 + V V + +L +G+++++L+ L T Sbjct: 595 CRIHDVPQSTGYGDPVQKLFKLADGERLIALMSFDPRALDVPAQTPDSAEPEPPFALAIT 654 Query: 749 QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR 808 + G G R ++ + S G K+ E V+ VD D+++ + + Sbjct: 655 RGGLGFRFSLRPHRDPS-TRSGRRFAKLNE-GDEVLFVHAVDGADRVLCASSDAWALSVA 712 Query: 809 VSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE-GDDEIAPEVD 867 V E++++ +G +++R AE E +VG P D ++T G E +IA + Sbjct: 713 VEELALLSGPGKGSVVMRVAEGERLVGAALALGPSDVITVETEKGKTLEIAASKIAGQRG 772 Query: 868 VDDEP 872 EP Sbjct: 773 TQGEP 777 >UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae RepID=B8DTB4_BIFA0 Length = 982 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 306/900 (34%), Positives = 435/900 (48%), Gaps = 136/900 (15%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I + EE+ S+L+YA SVI RALPD RDG+KPV RR++Y M + + Y K Sbjct: 18 EHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYMK 77 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVG+V+GK HPHGDSA+Y+ +VR+AQPF++R LVDG GNFGS+D D AA RYTE Sbjct: 78 SARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEA 136 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RLA A + AD++++TVDFV NYD K P V+P+ IPNLLVNG+SGIAVGMATN+ H Sbjct: 137 RLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMATH 196 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL EV+ + D +++ LM+++PGPD+P II GR+GI +AY TGRG V R+ Sbjct: 197 NLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTRSA 256 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRIV 304 VE + ++ I+V ++PY V R++E+I+E VK +++GIS D +D+ +G RIV Sbjct: 257 THVE-NLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIV 315 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+K VL L+ T LQ +F IN VAL +G+P + L+ ++ ++ HRR V+ R Sbjct: 316 IELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVIRR 375 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R+ F +KA DR H++E L +AL +ID +I +IR + AK L++ Sbjct: 376 RSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR----------- 424 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + L + QAQ ILDLRL++LT + +L E EL Sbjct: 425 -----------------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSS 461 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD----------------- 527 I EL RILGSA L V+ +E++ +G RRT + D Sbjct: 462 ITELERILGSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDA 521 Query: 528 -------------------------INLEDL-ITQEDVVVTLSHQGYVKYQPLSEYEAQR 561 E L I E V+ LS G + + Sbjct: 522 ALDAARHAENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDALTIW- 580 Query: 562 RGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR-----G 616 +G + + +D I L+ A T +S GR+ V +LP G Sbjct: 581 -AKRGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGG 639 Query: 617 RPIVNLL------PLEQDERITAILPVTE-------FEEGVKVFMATANGTVKKTVLTEF 663 LL ER+ A L + + + V + T NG VK+ Sbjct: 640 IEATELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRE-- 697 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + I L DGDEL+ +D + S++ ++ ++ +VR G G+ G Sbjct: 698 SPTTMDSWSIIDLKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRPQGRTAAGMAG 757 Query: 724 IRLGEGDKVVSLIV------------------------------PRGDGAILTATQNGYG 753 I L +G V+S V GD L T+NG Sbjct: 758 IHLADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSPASGAVVLTVAGDVDALPGTENGAA 817 Query: 754 KRTAVAEYPTKSRATKGVISIKVTE-RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 812 K T + YPTK RAT GV S + + +N L+ V ++ T G V I Sbjct: 818 KVTPLELYPTKGRATGGVRSQRFLKGQNTLIRACVGSYP---LLAATSGGHPVELPAPAI 874 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 102/320 (31%), Gaps = 48/320 (15%) Query: 595 SRGRVYSMKVY--QLPEATRGARGRPIVNLLPLEQ--------DERITAILPVTEFEEGV 644 GR+ + + +P R N+L E A+ E+ Sbjct: 503 DDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGETAEAL----RIEDEP 558 Query: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVV 704 V +A+G + + + G K D ++ + + L ++ G++V Sbjct: 559 CVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMV 618 Query: 705 ---RFKESSVRAMG--CNTTGVRGIRLG---------EGDKVVSLIVPRGD--------- 741 + ++ G T G+ L G++V++ + R Sbjct: 619 LAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQ 678 Query: 742 -GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITD 800 + T+NG KR T SI + ++ A D D+ + ++ Sbjct: 679 LPPVGLGTRNGIVKRWNRESPTTMD-----SWSIIDLKDGDELLVAADAHDDDRFVFVSS 733 Query: 801 AGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE-EDLDTIDG----SA 855 +L+ + GR G+ I A+ V+ VA E D + D S Sbjct: 734 DSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSP 793 Query: 856 AEGDDEIAPEVDVDDEPEEE 875 A G + DVD P E Sbjct: 794 ASGAVVLTVAGDVDALPGTE 813 >UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SLW9_9CAUL Length = 738 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 285/785 (36%), Positives = 413/785 (52%), Gaps = 71/785 (9%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D I + E L YL YA+S I+ RALPDVRDGLKPVHRRVLYAM+ + + A Sbjct: 8 DEGGRILSEPMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAA 67 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 +KSA+VVG+V+G +HPHGD ++YD +VRMAQ F+ RY +VDGQGNFG+IDGDSAAAMRY Sbjct: 68 ARKSAKVVGEVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDGDSAAAMRY 127 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE ++ A L+ +++ VDF YDG ++ P V+P PNLL NG++GIAVGMAT+I Sbjct: 128 TECKMTTAAMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSI 187 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVY 241 PPHN+ E+I+ C I + + GLM IPGPDFPT I + R I EAY TGRG V Sbjct: 188 PPHNVAELIDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVR 247 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 +RAR EVE D G I+V EIPYQV K+RLIE++A+L++ K+ + +RDESD++ + Sbjct: 248 VRARYEVE-DLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEE-V 305 Query: 302 RIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLKDIIAAFVRHRR 359 R+++E K R+ EV++ +L+ + L+ F NM L G P++M LK I+ +F+ HRR Sbjct: 306 RLILEPKTRNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRR 365 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EV+ R++ + L K R H+L+ L +A N+D +I +IR TP K L+A Sbjct: 366 EVLIRQSQWRLDKIEKRLHVLDGLMIAFLNLDEVIRIIREDETP---KQTLMAR------ 416 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + LTE Q ILD RL++L LE + E+ Sbjct: 417 ----------------------------FELTEVQVDYILDTRLRQLARLEEMAIKGEHD 448 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADIN---LEDLITQ 536 +L + LL +LGS + + I E+L VR+Q RRT + +E + + Sbjct: 449 KLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQLLSARRTTFAEAPQGVEVAAIESYLPK 508 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 E + V LS +G+++ S + KE D + L+ D +L +S Sbjct: 509 EALTVILSERGWIRATKGR--------VDDPSELKFKEGDNLGFLVPGYNTDKLLIMTSD 560 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 GR +++ +LP G P+ +L +E++ RI + F G K M + NG Sbjct: 561 GRFFTLGCDKLPSGR--GHGEPLQLMLEMEENTRIVNVF---MFTPGAKRLMVSKNGYGF 615 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 + + AGK + DG E V L D V++ KV+ + S + M Sbjct: 616 VMNEEDAVGNKKAGKSVLN-ADGTE-AFVALPVTGDHVVILGENNKVLVYPVSELPEMAR 673 Query: 717 ---------NTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 GV+ I + + V G ++ GKR +V R Sbjct: 674 GKGVKLQGYKDGGVKDIAIFDQAGPVQWFDGSGKARDFKDWKDFVGKRASVG--KMAPRG 731 Query: 768 TKGVI 772 + + Sbjct: 732 LRKLR 736 Score = 53.4 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 81/213 (38%), Gaps = 15/213 (7%) Query: 620 VNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 679 Q + AI + + + G ++ T R +K +G Sbjct: 488 TTFAEAPQGVEVAAIESY--LPKEALTVILSERGWIRATKG------RVDDPSELKFKEG 539 Query: 680 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI-RLGEGDKVVSLIVP 738 D L + D++++ +++G+ + + + ++ + + E ++V++ + Sbjct: 540 DNLGFLVPGYNTDKLLIMTSDGRFFTLGCDKLPSGRGHGEPLQLMLEMEENTRIVNVFMF 599 Query: 739 RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI 798 L ++NGYG + +A K V++ TE A+ V D ++++ Sbjct: 600 TPGAKRLMVSKNGYGFVMNEEDAVGNKKAGKSVLNADGTE----AFVALPVT-GDHVVIL 654 Query: 799 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE 831 + ++ VSE+ + R +GV L + Sbjct: 655 GENNKVLVYPVSELPEMAR-GKGVKLQGYKDGG 686 >UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PLT5_MYCA5 Length = 949 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 247/823 (30%), Positives = 419/823 (50%), Gaps = 44/823 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +L I N+ + + + Y+ +I RA+PD RDGLKPV RR+LY+M L N Sbjct: 9 MYNLTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNN 68 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +A++KSA++VG+V+G+YHPHGDS++Y+ +VRM+Q + + L++ GN GSID D AAAM Sbjct: 69 QAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAM 128 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL KI+ ++ DL+++ V N+D TE P V+P+ IPNLL+NGS GIA G AT Sbjct: 129 RYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFAT 188 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL+EVI+ + I + IS+E L + + GPDFPT +I+G GI +A+ TG+GK+ Sbjct: 189 EIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQAFETGQGKI 248 Query: 241 YIRARAEVEVDAKTGRET--IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 I +R + I ++E P+ V K++L+ I LV +K + G+ +RD+S++ Sbjct: 249 NISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNR 308 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+ I +E++ +A E ++N L S+T L++S+ NMVA+H PK+MNL+ ++ ++ H Sbjct: 309 EGISIYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQMLLFTYLSHL 368 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 +++ T+ F+L+K R I++ D +I +I+++ Sbjct: 369 KDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSK-------------- 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + + + T QA AI +LRL KL+ ++ + +E Sbjct: 415 -------------------KGVIEALEKTFGFTNIQATAIAELRLYKLSKMDQLEFQNEA 455 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS--ADINLEDLITQ 536 KEL +IA +L + + + I E+L+ +++++ R +EI+ + +IN + L Sbjct: 456 KELAIKIARCKELLENPNEFDKFIIEQLKDIKKEYAKPRFSEISQDKIRTEINTKLLAKN 515 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ED LS +GY+K + + G S ++K+ D I N+ ++ F++ Sbjct: 516 EDFYFFLSKEGYIKRISKKAFSS-----NGFSGFKLKDNDAIFYYDKINSLSKLIFFTNL 570 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G + + + L E G I +L+ LE +ERI ++ + F + + T G K Sbjct: 571 GNYFIIDAHTLKENGWKDIGNHISSLVALENNERIIRVMEIESFNTYSRFIILTKKGMAK 630 Query: 657 KTVLTEFNRLRTAGKV-AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 K + EF+ + A K I L DEL V + + E + + G E+ V Sbjct: 631 KVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNKEKLLFILLTGGLYYLIDENVVPEYS 690 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-VISI 774 +G+ I+ ++ + ++ T G KRT + R++ G V Sbjct: 691 LKASGISLIKTDRDQEIEAFSPISPKNKVIIMTDKGQFKRTKMETVKLVGRSSHGKVFYY 750 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGR 817 + + V+ Q + + I + + Sbjct: 751 PMKTVSSKVISLEVATTQLQCYFTNKENEPTKFDLKNIPLSKQ 793 >UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphaproteobacteria RepID=A3VFM2_9RHOB Length = 856 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 268/749 (35%), Positives = 407/749 (54%), Gaps = 59/749 (7%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 + + YL YA+S I+ RALPD RDGLKPVHRR+L+AM L + ++KS+++ G Sbjct: 57 PLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLNSGGRFRKSSKISG 116 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 131 DV+G YHPHGD+A+YD + R+AQ F++RY LVDGQGNFG+IDGD+ AA RYTE R+ +A Sbjct: 117 DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTIVA 176 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 L+ L+++ VDF +NYDGT + P V+P P+LL NG++GIAVGMATNIPPHN++E++ Sbjct: 177 EALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGAAGIAVGMATNIPPHNISELV 236 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEV 250 + CL I D + L+ +IPGPDFPT +I R I EAYRTGRG + +R++ EVE Sbjct: 237 DACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAEAYRTGRGSIRLRSKWEVE- 295 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK-R 309 D G+ IIV EIPYQV K++LIEK+AE+++ K+V ++ +RDES D +RIV+E K R Sbjct: 296 DLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDESADD-VRIVLEPKTR 354 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHG-QPKIMNLKDIIAAFVRHRREVVTRRTIF 368 + E+++ L+ + L+V F +NM L G PK+ +LK+++ AF+ RREV+ RR+ Sbjct: 355 NVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVLRAFLDFRREVLIRRSQH 414 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG---------- 418 + K R +LE +A N+D +I++IR+ P A L+ W Sbjct: 415 RMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMYEDWSRPHQDTIARATN 471 Query: 419 -----------NVAAMLERAGDDAARPEWLEPEFGVRDGLYYL-------TEQQAQAILD 460 +VA++ R + A PE + G ++ QA AIL+ Sbjct: 472 EHDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFVGRSEGLSDVQADAILN 531 Query: 461 LRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDK---- 516 +RL+ L LE +L+ E L+++ A L +L S D I +EL+ +++FG Sbjct: 532 MRLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGDELKDAKKKFGKDYVAG 591 Query: 517 -RRTEITANSA--DINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK 573 RRT+ + D+ LE +I +E V + S G+++ + K Sbjct: 592 ARRTQFAEAAEVPDVPLEAMIEREPVTIVCSQMGWIRAMSGH--------VDLTRDFKFK 643 Query: 574 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITA 633 + D A T D I+ F++ GR Y++ LP G P+ ++ L D I Sbjct: 644 DGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGGR--GMGEPLRLMVDLPNDVEIID 701 Query: 634 ILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 693 + K+ +A+ G + GK + + D++ + D Sbjct: 702 MFV---HAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNVS--DDVAKLVKPVAGDH 756 Query: 694 VMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 V + S K++ F + + MG GVR Sbjct: 757 VAVVSENRKLLVFPIAELPEMGR-GKGVR 784 Score = 60.3 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 84/205 (40%), Gaps = 17/205 (8%) Query: 674 IKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG--VRGI-RLGEGD 730 K DGD D++++F+A G+ S++ G G +R + L Sbjct: 640 FKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLP--GGRGMGEPLRLMVDLPNDV 697 Query: 731 KVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD 790 +++ + V D ++ A++ G G A+ +++ K V+++ V V+ Sbjct: 698 EIIDMFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNVS-----DDVAKLVKPV 752 Query: 791 DCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED---ENVVGLQRVAEPVDEED 847 D + ++++ L+ ++E+ +GR +GV L + + + L + D Sbjct: 753 AGDHVAVVSENRKLLVFPIAELPEMGR-GKGVRLQKYGSARGRQGTLDLDGGLSDLTTFD 811 Query: 848 LDTIDGSAAEGDDEIAPEVDVDDEP 872 L T AA GD +VD P Sbjct: 812 LATGLSWAATGDRT---RTEVDMSP 833 >UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphaproteobacteria RepID=A8LLG0_DINSH Length = 777 Score = 718 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 286/744 (38%), Positives = 408/744 (54%), Gaps = 47/744 (6%) Query: 1 MSDLAREI-----TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVL 55 M D E T + + + YL YA+S I+ RALPD RDGLKPVHRR+LYAM L Sbjct: 10 MDDPDAEEPGAAQTSEPLRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAMREL 69 Query: 56 GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 115 ++KSA++ GDV+G YHPHGD+A+YD + R+AQ F++RY LVDGQGNFG+IDGD Sbjct: 70 RLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 129 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 + AA RYTE RL A LM L + VDF DNYDGT P+V+P PNLL NGSSGIA Sbjct: 130 NPAASRYTEARLTAAAEALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIA 189 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYR 234 VGMATNIPPHNL E+I+GCL I + E L+E IPGPDFPT +I + I +AY Sbjct: 190 VGMATNIPPHNLHELIDGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYA 249 Query: 235 TGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRD 294 TGRG +RAR E D G+ I++ EIPYQV K++LIEKIA+L++ K+V ++ +RD Sbjct: 250 TGRGAFRLRARWARE-DLGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRD 308 Query: 295 ESDKDGMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIA 352 ES D +RI++E + ++ EV++ L+ ++L+ F +NM L G+ PK+ +L++++ Sbjct: 309 ESADD-VRIILEPRSKNVDPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLR 367 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 AF+ HRR+V+ RR+ L K R +LE VA N+D +I++IR+ P A L+ Sbjct: 368 AFLDHRRDVLGRRSRHRLAKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAA---LMR 424 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 W L +V A E A E LTE QA+AIL++RL+ L LE Sbjct: 425 EDWSLKHVRATDEADYKTPAPGEG------------ELTEVQAEAILNMRLRSLRRLEEM 472 Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD-----KRRTE--ITANS 525 +L+ E L+ + AEL +L I +EL VR+QFG KRRT+ + Sbjct: 473 ELISERDALMAERAELEDLLADEALQWARIADELREVRKQFGKGTALGKRRTDFAVATEM 532 Query: 526 ADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585 A+++LED+I +E + V S G+++ Q A + K+ D + A Sbjct: 533 AEVSLEDMIEREPITVVCSKMGWIRAMKGHVALDQ--------ALKFKDGDEGRFIFHAE 584 Query: 586 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK 645 T D +L F + GR Y++ LP G PI ++ L + + + G + Sbjct: 585 TTDKLLAFGANGRFYTLSCAALPGGR--GMGEPIRLMVDLPNEAELVDLFL---HVPGRR 639 Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 + +A+ G TE GK + + + +G D + K++ Sbjct: 640 LIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPVAG-DAIAAVGENRKLLV 698 Query: 706 FKESSVRAMGCNTTGVRGIRLGEG 729 F + MG GVR + +G Sbjct: 699 FAADELPEMGR-GKGVRLQKYKDG 721 >UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z0V3_EUBE2 Length = 769 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 277/796 (34%), Positives = 433/796 (54%), Gaps = 57/796 (7%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A +I E ++ SY+DY+MSVI RALPDVRDGLKPV RRVLYAM+ LG +++K + Sbjct: 1 MAEKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPH 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSAR+VGD +GKYHPHGDS++Y+T+V ++Q F LVDG GNFGSI+GD AAAMRYT Sbjct: 61 RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120 Query: 124 EIRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 E +L K ++ +ADL+K VDFV N+D TEK P+V+P ++PNLLVNG+ GIAVGM TNI Sbjct: 121 EAKLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNI 180 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL+EV++ AY+D+EDI+ + LM+ PGPDFPT I+ + + Y TG GK+ + Sbjct: 181 PPHNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGGIVINKSELGAIYETGTGKIKL 240 Query: 243 RARAEVE-VDAKTGRETIIVHEIPYQV---NKARLIEKIAELVKEKRVEGISALRDESDK 298 R + E ++ ++ +++ EIPY + N + I + L++ K+ I + +ES K Sbjct: 241 RGKVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESSK 300 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+RIV+E+K++A + + N LY +T+L+ +FG+NM+A+ G+P+ + +KDII + + Sbjct: 301 EGIRIVLELKKNADVKNLENLLYKKTKLEDTFGVNMLAIVDGRPETLGIKDIIKHHINFQ 360 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 E+ TR+ L K + I E L A ID IIE++R + AK LV + Sbjct: 361 YELATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNGNVEG- 419 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 ++ + + TE+QA AIL++RL KL GLE L EY Sbjct: 420 ---------------IKFKSEQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEY 464 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 E + +I + +ILGS + +VI+ +L +++++G +RRT I A + E I + + Sbjct: 465 DECVKKIEKYEKILGSRKEMAKVIKADLLNIKKEYGVERRTVIEDGEAAVFEEKKIPEME 524 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V+ + GY + ++ +E + ++ ++ D I F+ G Sbjct: 525 VMFIMDRFGYARTIDMAAFERNKDAVFNEN----------KYVIPVMNTDKICIFTDTGD 574 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 ++ +K+ LP +G PI NL + + I + E + K+ T G +K Sbjct: 575 LHQLKIKDLPFTKFRDKGTPIDNLCNYDSSKEIIVYITPFERLKNQKMLFVTRQGMMKLV 634 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGV----------------------DLTSGEDEVML 696 EF + KL D D+LIG+ ++ V++ Sbjct: 635 DSEEFQVAKRT-VACTKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIV 693 Query: 697 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT 756 + G ++F + + + GVRGI+L + D + + + T GK Sbjct: 694 QTENGVFLKFPLTDIPMKKKSAVGVRGIKLSKDDYIEDVFLLTEGDE---FTMEYKGKSI 750 Query: 757 AVAEYPTKSRATKGVI 772 + A+ T R TKG Sbjct: 751 SFAKMKTAHRDTKGTK 766 Score = 62.2 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 85/247 (34%), Gaps = 40/247 (16%) Query: 625 LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIG 684 +E E A+ + E +F+ G + + F R + A E Sbjct: 507 IEDGE--AAVFEEKKIPEMEVMFIMDRFGYARTIDMAAFERNKDAVFN--------ENKY 556 Query: 685 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGD---KVVSLIVPRG- 740 V D++ +F+ G + + K + G L D +++ I P Sbjct: 557 VIPVMNTDKICIFTDTGDLHQLKIKDLPFTKFRDKGTPIDNLCNYDSSKEIIVYITPFER 616 Query: 741 --DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN------------------ 780 + +L T+ G K E+ R V K+ + + Sbjct: 617 LKNQKMLFVTRQGMMKLVDSEEFQVAKR---TVACTKLADDDKLIGMYSTDARVEIYSKF 673 Query: 781 ---GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 G + V+ +++ T+ G ++ +++I + ++ GV I+ ++D+ + + Sbjct: 674 SLDGEIKEEEVVESNQNVIVQTENGVFLKFPLTDIPMKKKSAVGVRGIKLSKDDYIEDVF 733 Query: 838 RVAEPVD 844 + E + Sbjct: 734 LLTEGDE 740 >UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV72_BACTU Length = 740 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 302/773 (39%), Positives = 449/773 (58%), Gaps = 36/773 (4%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + +I ++ +E+KSS++DYA++V+ RALPDVRDGLKPVHRR+LYAM LG +KAY Sbjct: 1 MGGKIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAY 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VG+VIGKYHPHGDSAVY+++V+ AQ F L+DG GNFGS+DGDSAAAMRYT Sbjct: 61 KKSARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ +A E++ DL K VDF DN+D +E+ P V+P K+PNLLVNG GIAVGMA P Sbjct: 121 EARLSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PH + V++ +AY D +DI IE L++ I PD+P+ II + + + YRTG GK IR Sbjct: 181 PHGVNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGIITNKNELRDLYRTGIGKAVIR 240 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 A+ ++E DA GR+ ++V EIPY +K L K+ +V EK++E I + DESDKDG+ Sbjct: 241 AKIDIE-DAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGI 299 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RIV+EVK+ + +LN LYS+T LQ S + L +G P +NLKD + ++E+ Sbjct: 300 RIVLEVKKGVDIDNLLNKLYSKTPLQSSESYQYLVLVNGVPTTINLKDYCKHYFDFQKEI 359 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 +R + L KA+ R ILE L A +D IIE++R A EAK L+ + + Sbjct: 360 TRKRYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTESISFK 419 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + + TE+QAQAILD+RLQKL GLE E+L EYKE+ Sbjct: 420 T----------------KKHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEV 463 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 L ++ E +LGS +++VI++ L ++ FG +RRTEI I + I +EDV V Sbjct: 464 LAEMEEYELVLGSEKEMLKVIKKYLRGFKKDFGRERRTEIQEKKT-IEYVEEIKEEDVWV 522 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 + GY K E + ++ + F+++GR+Y Sbjct: 523 LIDKFGYTKSVDTISVERSSEETLS----------EYKQEILTKNTSKLSVFTNQGRLYQ 572 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 +K+ +P+ +G PI L ++++E I TE E V M T G +K+T+ + Sbjct: 573 IKLADIPKVKIKDKGVPIQRLGKMKKNEYPLYITTNTELETER-VIMLTKTGLIKQTLCS 631 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSG-EDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E R+ VA KL + DE+I + + +++V++FS +G ++RF + + + N G Sbjct: 632 ELISSRSV-VVATKLEEDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKG 690 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 V+ + L E D + + + + + + GK+ +++ K+R KG+ Sbjct: 691 VKAVSLMEEDVIEGVYILNENNKDV---KQLNGKQIELSKVERKTRGKKGINF 740 Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 90/219 (41%), Gaps = 18/219 (8%) Query: 633 AILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 692 I V E +E + G K R L + + I LT Sbjct: 508 TIEYVEEIKEEDVWVLIDKFGYTKSVDTISVERSSEE-----TLSEYKQEI---LTKNTS 559 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDK-----VVSLIVPRGDGAILTA 747 ++ +F+ +G++ + K + + + GV RLG+ K ++ ++ Sbjct: 560 KLSVFTNQGRLYQIKLADIPKVKIKDKGVPIQRLGKMKKNEYPLYITTNTELETERVIML 619 Query: 748 TQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD-CDQIMMITDAGTLVR 806 T+ G K+T +E SR+ V+ E + V+ +++ + +++ + G ++R Sbjct: 620 TKTGLIKQTLCSEL-ISSRS---VVVATKLEEDDEVIQITPINEVDEDVLVFSKKGYILR 675 Query: 807 TRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 ++EI ++ +N +GV + E++ + G+ + E + Sbjct: 676 FSINEIPVLRKNAKGVKAVSLMEEDVIEGVYILNENNKD 714 >UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=uncultured bacterium RepID=C5JAG1_9BACT Length = 765 Score = 713 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 285/788 (36%), Positives = 431/788 (54%), Gaps = 65/788 (8%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 A +I P I EL+S YL YA+S I+ R+LPDVRDGLKPVHRR+L+AM L D +K Sbjct: 6 AEKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFK 65 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSARVVGDVIGK+HPHGD A YD +VR+AQ F+ RY LVDGQGNFG++DGD AAAMRYTE Sbjct: 66 KSARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAMRYTE 125 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL +A L+ DL+++TVD + YDG+++ P V+P + PNLL NG++GIAVGM+T IPP Sbjct: 126 ARLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIPP 185 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIR 243 HN EV+ L I D + LM+H+PGPDFPT ++ + E Y TGRG + +R Sbjct: 186 HNAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRLR 245 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 AR E E+ G ++V EIPY V K RLIE+IA+L+ +++ +S +RDESD +RI Sbjct: 246 ARWEQEM-VGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAK-VRI 303 Query: 304 VIEVK-RDAVGEVVLNNLYSQTQLQVSFGIN-MVALHHGQPKIMNLKDIIAAFVRHRREV 361 V+E + R E ++ L+ + L+V +N V +P++M+LK ++ A++ HR +V Sbjct: 304 VLEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQV 363 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 TRR +L + R+R H+L+A NID +I +I+ PA A L+ Sbjct: 364 HTRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPA---LMQR-------- 412 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + + +QA+A+L+LRL+ L LE + E E Sbjct: 413 --------------------------FGMDSEQAEAVLNLRLRALRRLEEMSIRKEMGEK 446 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDV 539 + AEL +L + +++E++ R++F D RRT + + +I+L EDLI +E + Sbjct: 447 EARAAELSAMLADPTLMWAAVQDEVKRTRKEFSDGRRTRMAGPAPEIDLRPEDLIQKEPL 506 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 LS +G++K + + ++ R KEED ++R + +H + ++ G+V Sbjct: 507 TAVLSRKGWIKALKGHDIDLEK--------IRFKEEDGLERAVKGYSHQTVTFLAASGKV 558 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 YS+ +LP R G P+ L L+ +RI +L V + + F+ T G + Sbjct: 559 YSLLGDRLPSGKR--FGEPLTVLFELDPGDRILWMLAV---DPEGEYFVTTRLGQGFRIR 613 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 + + GK + L +GD+ + V G V S +++ + +G Sbjct: 614 GRDLVANQRTGKQVVSLREGDQPLHVHPVRGAA-VAAISHGRRLLICRLEEFPLLGR-GK 671 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 GVR LG G+ +V + ++ + GKRT K + T+G + Sbjct: 672 GVRIQNLGRGEGLVDAMTFDPQAGLVLDS----GKRTRQLTELDKWQGTRGSRGAML--P 725 Query: 780 NGLVVGAV 787 +G + GAV Sbjct: 726 HGFLGGAV 733 Score = 53.4 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 12/205 (5%) Query: 632 TAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 691 + P ++ + + G +K + + + I+ + D L Sbjct: 493 IDLRPEDLIQKEPLTAVLSRKGWIKALKGHDIDLEK------IRFKEEDGLERAVKGYSH 546 Query: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI-RLGEGDKVVSLIVPRGDGAILTATQN 750 V +A GKV + + + + L GD+++ ++ +G T+ Sbjct: 547 QTVTFLAASGKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVDPEGEYFVTTRL 606 Query: 751 GYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 810 G G R + R K V+S++ ++ V + I+ L+ R+ Sbjct: 607 GQGFRIRGRDLVANQRTGKQVVSLREGDQPLHVHPVRGAA----VAAISHGRRLLICRLE 662 Query: 811 EISIVGRNTQGVILIRTAEDENVVG 835 E ++GR +GV + E +V Sbjct: 663 EFPLLGR-GKGVRIQNLGRGEGLVD 686 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 64/216 (29%), Gaps = 21/216 (9%) Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA----IKLVDGDELI 683 E+ ++ + A VK+T EF+ R I L D Sbjct: 444 GEKEARAAELSAMLADPTLMWAAVQDEVKRTR-KEFSDGRRTRMAGPAPEIDLRPED--- 499 Query: 684 GVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA 743 L E + S +G + K + IR E D + + Sbjct: 500 ---LIQKEPLTAVLSRKGWIKALKGHDIDLEK--------IRFKEEDGLERAVKGYSHQT 548 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 803 + +G P+ R + + + + ++ + VD + + T G Sbjct: 549 VTFLAASGKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVDPEGEYFVTTRLGQ 608 Query: 804 LVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 R R ++ R G ++ E + + + V Sbjct: 609 GFRIRGRDLVANQRT--GKQVVSLREGDQPLHVHPV 642 >UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n=22 Tax=Ureaplasma RepID=B5ZBW2_UREU1 Length = 855 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 252/811 (31%), Positives = 430/811 (53%), Gaps = 47/811 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MS ++I ++ + SY YA +I RALPD+RDGLKPV RR+LYAM+ LG + Sbjct: 1 MSVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHD 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSAR VG+VIGKYHPHGDS++Y+ +VRM+Q + L+D GN GSIDGD+AAAM Sbjct: 61 KPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+KIA ++ +L+K+ V F N+D +EK P ++P+ PNLL+NG++GIA G AT Sbjct: 121 RYTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +IPPHN EV + + ID D SIE L++ P PDFPT I+ G A++TG GK Sbjct: 181 SIPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKF 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IRA E + ++ II++ IPY+ NKA +I++I +++ K V G+ +RDESD G Sbjct: 241 VIRASIEFKT-SEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+I+ K+D E V N LY +T L++S+ +A+ H P +++L + A + H + Sbjct: 300 VSIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLD 359 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ + +++L K R I+E L + ID II++IR + + +AK AL+ Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQT------- 412 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + T QA+AI+ +RL LT + L +E++ Sbjct: 413 ---------------------------FAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWES 445 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQED 538 L Q L + S +++++ +++FG +R+T++ A++N + +I ++ Sbjct: 446 LQQQAKILKERIKSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQS 505 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + + +S GY+K +E+ + G +K D + V N+HD IL +S+ + Sbjct: 506 LNLVISRDGYIKIVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAK 560 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF--EEGVKVFMATANGTVK 656 + ++ +++ G + N + +E++ A+ E + ++ + + +K Sbjct: 561 LINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIK 620 Query: 657 KTVLTEFNRLRTAG-KVAIKLVDGDELIGVDLTSGEDE--VMLFSAEGKVVRFKESSVRA 713 + L E + + + +KL + D LI +L + V+ S G V+ F + Sbjct: 621 RIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINC 680 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 + G++ ++L D++ S+++ +G + + K +++E RA Sbjct: 681 LNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPL 740 Query: 774 IKVTERNGLVVGAVQVDDCDQIMMITDAGTL 804 T++ V+ A V + + ++ + + Sbjct: 741 YLPTKKAQSVLAAFLVGNENVFYLLDEQQKI 771 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 94/223 (42%), Gaps = 14/223 (6%) Query: 628 DERITAILPVTEFEEGVKV-FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVD 686 DE I A + + E + + + +G +K F + + L D L + Sbjct: 488 DEFIKAEVNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKYD---ELGLKTNDLLFYHN 544 Query: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPR---- 739 + + D +++ +++ K++ + M G + +KVV++ V Sbjct: 545 VINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFK 604 Query: 740 -GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ-IMM 797 + ++ ++ KR + E ++ +K + +K+ E +GL+ + D +Q ++ Sbjct: 605 VDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNENDGLISANLIKKDHNQFVVA 663 Query: 798 ITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 I+ G ++ V EI+ + R +G+ +++ ++ + + V Sbjct: 664 ISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706 >UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Planctomycetaceae RepID=A6CC19_9PLAN Length = 802 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 262/816 (32%), Positives = 425/816 (52%), Gaps = 64/816 (7%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM-NVLGNDWNKAY 63 + I V I + + YL+YAMSVI RALPDVRDGLKPV RR+LY M + L N Sbjct: 21 SDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAKP 80 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +K A++ GD G YHPHGD++VYD +VR+AQ F+LR L++GQGNFGSI G AAA RYT Sbjct: 81 RKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAAAARYT 140 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL IA LM +L +TV+ NYDGT P V+P + PNLLVNG GIAVGMATNIP Sbjct: 141 EARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNIP 200 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYI 242 PHNL EVI C+ I +D ++ LM+HI GPDFP I+ +R + Y+ GRG V + Sbjct: 201 PHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVKV 260 Query: 243 RARAEVEVDAKT-GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-DKDG 300 R + E +T G + ++V+ +PY V L+ +I +V+ +++ + + DE+ DK+G Sbjct: 261 RGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKNG 320 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-----PKIMNLKDIIAAFV 355 ++IV+E+K DA E V+ LY T L+ +F +NM L + P+ +LK+++ F+ Sbjct: 321 LKIVLEIKPDADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQYFL 380 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW 415 R V +R ++L+ R HIL+ A+ ++D ++LIR + +A L+AN Sbjct: 381 DFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN-- 438 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 + L E Q AIL+L+L +++ LE + Sbjct: 439 --------------------------------FPLDEIQTMAILELQLYRISKLEINTIR 466 Query: 476 DEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDL 533 +E E + ++ +IL S RL +V+ EL+ + ++F +KR+T++ + + + + Sbjct: 467 EELAEKEAEAEKIRKILASDKRLWKVVENELKELADEFPEKRQTKLGSSEEITEFDPQAY 526 Query: 534 ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF 593 I +E+ V +S +G++K + + G + + R +E D + + +T DH++ F Sbjct: 527 IVRENTNVVVSREGWIKRVGRLK---TKEGTQELAKTRTREGDSVLAVAPGSTLDHVVFF 583 Query: 594 SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE-FEEG--------- 643 SS G Y++ + Q+P ++ G P+ + + A + F Sbjct: 584 SSDGVAYTLPIEQVPVSS--GYGEPLSKHARMSDGAVLVAAVTTDSRFTPEDKATKKQPL 641 Query: 644 --VKVFMATANGTVKKTVLTEFNRLRT-AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 V + T G + + F T AG+ +L D ++ L + + + + + Sbjct: 642 PTPHVLIVTEKGQFMRISFSLFRTASTKAGRKYCRLGKDDRVVYAGLVEEAETMFIATQD 701 Query: 701 GKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVA 759 +V+ + + GV+GIRL +GD+V+ ++ + R + G Sbjct: 702 ARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIGVLQLTRPSDCLRVINTAGKKMTFGQM 761 Query: 760 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 795 +Y SR KGV + + + ++ ++V D D++ Sbjct: 762 KYGVTSRGGKGVKTSQRSGFAEILYPPIEVVDWDEL 797 Score = 84.9 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 90/246 (36%), Gaps = 37/246 (15%) Query: 624 PLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV-------LTEFNRLRTAGKVAIKL 676 L E IT P + + G +K+ E + RT Sbjct: 511 KLGSSEEITEFDPQAYIVRENTNVVVSREGWIKRVGRLKTKEGTQELAKTRTR------- 563 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVV 733 +GD ++ V S D V+ FS++G V + G + R+ +G +V Sbjct: 564 -EGDSVLAVAPGSTLDHVVFFSSDGVAYTLPIEQVPV--SSGYGEPLSKHARMSDGAVLV 620 Query: 734 SLIVPRGD---------------GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 + + +L T+ G R + + + T S G ++ Sbjct: 621 AAVTTDSRFTPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTAS-TKAGRKYCRLG- 678 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 ++ VV A V++ + + + T ++ + E +++ +GV IR + + V+G+ + Sbjct: 679 KDDRVVYAGLVEEAETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIGVLQ 738 Query: 839 VAEPVD 844 + P D Sbjct: 739 LTRPSD 744 >UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma hominis RepID=O52166_MYCHO Length = 933 Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 247/811 (30%), Positives = 411/811 (50%), Gaps = 49/811 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + ++ I N+ + + + Y+ +I RA+PD RDGLKPV RR+LY+M L + Sbjct: 9 IQEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNS 68 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + +KKSAR+VGDVIG+YHPHGDS++Y+ +VRMAQ + + L++ GN GSID D AAAM Sbjct: 69 EPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSIDDDPAAAM 128 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL KI+ ++ DL+++ V N+D +E P V+P PNLLVNG+ GIA G AT Sbjct: 129 RYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFAT 188 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL EVI+ +A I + ISIE L E + GPDFPT AIING I++A +G+G++ Sbjct: 189 EIPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGAIINGINEIKKALSSGQGRI 248 Query: 241 YIRARAEVEVDAK--TGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 I ++ D K + I + EIP+ V K++L+ I + +K++ GI + D++D+ Sbjct: 249 TISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQTDR 308 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+ I I+++ A + ++ L ++T+L +S+ NMVA+ + +P I+NL + A++ H Sbjct: 309 NGISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAIDNNRPVILNLYSALIAYLSHL 368 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 +EV ++L+K + R I+E D +I LI+ + Sbjct: 369 KEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSK-------------- 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + + +E QA AI +LRL KL+ ++ + +E Sbjct: 415 -------------------KGVILALMNKFKFSELQATAIAELRLYKLSRMDQIEFQEEK 455 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQ 536 K L QI ++L + + ++L ++ Q+ R TEI+ D I+ + L Sbjct: 456 KNLEIQIENCNKLLNDKWEFNQYLIKQLLEIKNQYSKPRLTEISDQKIDKEIDHKLLTKN 515 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ED + ++ GY K L Y + S ++KEED + N+ IL F++ Sbjct: 516 EDFYLYITKDGYYKKISLKVYTSNE-----LSTFKLKEEDNVFYFDKVNSLSKILFFTNL 570 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G + + + + G+ I +++ LE E+I ++ +T F + + G K Sbjct: 571 GNYFIIDCHLFKDCNWKDLGQHISSIVALESSEKIIRVIEITSFNNYANFILMSKLGYAK 630 Query: 657 KTVLTEFNRLRT-AGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA- 713 K L +F + K + D DELI +++ E + + G E+ ++ Sbjct: 631 KVNLRDFENKSSLKTKTCMSFKDDNDELIDAQISNDEKMLFILLNNGMYHLVSENELKVG 690 Query: 714 MGCNTTGVR-GIRL--GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 + G+R + L +V I I+ TQ GY K ++ + +R T Sbjct: 691 ISLKARGIRLLLNLYKHPQLQVSGFITVSKYNNIIYLTQGGYIKCWDTSKLESTTRNTPK 750 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 ++ + + N L + ++ V + M+ TD Sbjct: 751 MLFTPL-KNNILGLQSLAVTLSNLKMLYTDN 780 >UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mobile RepID=Q6KHI4_MYCMO Length = 858 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 271/854 (31%), Positives = 453/854 (53%), Gaps = 56/854 (6%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 ++L + +++ + + Y YA +I RALPDVRDGLKPV RR+LY+M+ LG K Sbjct: 4 NELKDKFLLQSLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEK 63 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSARVVGDVIGKYHPHGDS++Y+ +VRM+Q + + L+ GN GSID D AAAMR Sbjct: 64 PFKKSARVVGDVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPAAAMR 123 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL+KI+ L++D++ +TV F N+D +EK P V+P PNLLVNG+ GIA G AT Sbjct: 124 YTEARLSKISSLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATE 183 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL EVI+G +A I + +I IE L I GPDFPT II G GI+EA +GRG++ Sbjct: 184 IPPHNLGEVIDGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAFSGRGRIT 243 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 I ++ EV + I++ EIPY V K++L+ +I E+ +K + G++ +RDE+++DG+ Sbjct: 244 ITSKYEVH------KNQIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGI 297 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 +IVI+++ A ++ L +T+LQ+ + N +A+H+ P +MNL D+I AF+ H + + Sbjct: 298 KIVIDLEAGADASKIMKFLMQKTELQLYYSYNNIAIHNNAPVLMNLHDLIQAFLDHVKVI 357 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 T + FEL K R I+E D +IE+IR + K +V N ++ Sbjct: 358 QTNKINFELEKLSKRLEIIEGFIKLTEISDQVIEMIRKSEGS---KVGVVENLIKI---- 410 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + +E QA++I +LRL +L+ + E+ + E +EL Sbjct: 411 --------------------------FNFSEIQAESIANLRLYRLSKTDVEEFIKEKQEL 444 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDV 539 +I L +L S + + + +++ + R+TEI D++L DLI E+ Sbjct: 445 ETRINFLKTLLSSESEFNAELIKIFKDIKKTYATPRKTEIKDQALKLDVSLSDLIQAEET 504 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V +S GY+K + + +KE+D + L T +L F+++G Sbjct: 505 FVGISRDGYIKR-----FNQKIHDSNEMQTYLLKEDDALIFLSKTLTTGKLLIFTNQGNY 559 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 S+ ++++ E G + + L +E + +L V +F + + + T G KK Sbjct: 560 ISIPIFKIAEEKWKNLGIHLNDFATLLPNEFLIKVLYVDDFSKDFSITLITKKGFGKKVQ 619 Query: 660 LTEFNRLRTAGKV-AIKL-VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 L EF R AIK DGDEL+ +T+ +++L + + +V +F E+ + G Sbjct: 620 LPEFEVSRENKSYPAIKFKKDGDELLNAFITNDRLDILLVNTKLEVYKFSENDFKTYGIK 679 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS-RATKGVISIKV 776 GV+ ++ + I + ++ T++G+ ++ + + ++ K +S Sbjct: 680 AAGVKISDNATKFEISAAIAYSQNDTLVFLTESGHARKINPKKVDILNQKSIKTFLSTSA 739 Query: 777 TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI----VGRNTQGVI-LIRTAEDE 831 ++ ++D + + T ++V EIS +T+G+ I ++ Sbjct: 740 KPSGKIIKYIFNLNDNVDLAIRTTD-SIVTINTKEISETESFTNLHTKGIYGAISLGDNS 798 Query: 832 NVVGLQRVAEPVDE 845 ++ ++ P++ Sbjct: 799 KLIS-NKLKHPIEN 811 >UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7D2_9CAUL Length = 737 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 274/757 (36%), Positives = 406/757 (53%), Gaps = 67/757 (8%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 I +E L YL YA+S I RALPDVRDG KPVHRR+LYAM+ + + A +K Sbjct: 12 RIIDEPMETALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKC 71 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A+VVG+V+G YHPHGD+++Y+ +VR+AQ F+ RY LVDGQGNFG+IDGDSAAAMRYTE + Sbjct: 72 AKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECK 131 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L A L+ +++++VDF YD ++ P V+P PNLL NGSSGIAVGMAT+IPPHN Sbjct: 132 LTPAAVLLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHN 191 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRAR 245 + E+I+ C +D + + L++ +PGPDFPT + + G I +AY TGRG V +RAR Sbjct: 192 VGELIDACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRAR 251 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E E D G IIV E+PYQV K+RLIE +A+L++ K+ + +RDES +D +R+++ Sbjct: 252 WETE-DLGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAED-IRLIL 309 Query: 306 EVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVT 363 E K R E+++ +L+ + L+V F INM L G P++M LK + AF+ HRREV+ Sbjct: 310 EPKNRTIEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLN 369 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ + + + R H+LE L + NID +I ++R P K L+A Sbjct: 370 RRSQWRIARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQP---KAVLIAR---------- 416 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + LTE QA ILD RL++L LE + E+K L + Sbjct: 417 ------------------------FGLTEVQADFILDTRLRQLARLEEMTIEKEFKALSE 452 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI---TANSADINLEDLITQEDVV 540 ++A L + S + + I +ELE VR+ RRT I SA + E I +E + Sbjct: 453 ELAHLQALTSSEGKQWKAISKELEAVRKALISPRRTTIADAVDTSAFVAPEAFIPREAIT 512 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V LS +G+++ + S + KE D + L+ A T D +L +S GR++ Sbjct: 513 VILSERGWIRAAKGK--------VEDPSELKFKEGDQLAYLVPAYTTDKLLVGASDGRIF 564 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++ +L G P+ ++ L++ I +L + G K+ +A+ G Sbjct: 565 TIGADKLASGR--GHGEPLRLMIDLDEKAEIINVLA---HQPGGKLLIASKAGYGFIAPE 619 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 + + GK + GD L + + T D V K + F + MG Sbjct: 620 DDTLAQKRGGKQVLN---GDMLAMLRIPQTPTADHVATIGENIKTLIFPLDELPEMGR-G 675 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKR 755 GVR +G + + V + +G G+R Sbjct: 676 KGVRLQNFKQG-GLADVTVFNAEQG--PEWADGGGRR 709 Score = 66.1 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 75/182 (41%), Gaps = 17/182 (9%) Query: 674 IKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG---IRLGEGD 730 +K +GD+L + D++++ +++G++ + A G G I L E Sbjct: 534 LKFKEGDQLAYLVPAYTTDKLLVGASDGRIFTIGADKL-ASGR-GHGEPLRLMIDLDEKA 591 Query: 731 KVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD 790 ++++++ + G +L A++ GYG + + R K V+ NG ++ +++ Sbjct: 592 EIINVLAHQPGGKLLIASKAGYGFIAPEDDTLAQKRGGKQVL-------NGDMLAMLRIP 644 Query: 791 DC---DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 D + I + + + E+ +GR +GV L + + + E Sbjct: 645 QTPTADHVATIGENIKTLIFPLDELPEMGR-GKGVRLQNFKQGG-LADVTVFNAEQGPEW 702 Query: 848 LD 849 D Sbjct: 703 AD 704 >UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB60_MYCGA Length = 797 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 244/785 (31%), Positives = 427/785 (54%), Gaps = 54/785 (6%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +++ ++++ + S+ YA +I RALPD+RDGLKPV RRVLY M LG +NK+Y+K Sbjct: 5 KKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRK 64 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SA VG+VIGK+HPHGDS++Y+ +VRM Q + L+D QGN GSIDGD+AAAMRYTE Sbjct: 65 SAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEA 124 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL+ + ++ ++ KETV+FV+N+D +E P ++P+ +PNLLVNGS+GIA G ATNIPP Sbjct: 125 RLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIPPF 184 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+I+ + ID + +E +++ +PGPDFPT II GI+ AY TG+GK+ IRA+ Sbjct: 185 NLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIRAK 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E D ++V +IP++ NKA +I I E+++ ++ + +RDESD+ G+R+V+ Sbjct: 245 IVNEND------QLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVVL 298 Query: 306 E--VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 + K + V + N LY TQLQ+++ N V + +P M++ + + +++ H ++ Sbjct: 299 QTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTILR 358 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 F+L+K + R ++ L A + ID II +I+ + +A L+ Sbjct: 359 NAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINK---------- 408 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 Y + QA+AI+ LRL +LT + L +E K L Sbjct: 409 ------------------------YQFSAIQAEAIVSLRLYRLTNTDILALKEEKKSLDT 444 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 I + +L + L + ++E L ++ F KRR+ I N IN +I ++++ + Sbjct: 445 NIKQYQLLLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLVINEASIIEKKELYL 504 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 S G +K + + ++ +IK++D++ L+ ++ + + ++ G V Sbjct: 505 VSSVDGLIKTIAYDQNKQLNP-----TSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVV 559 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + +++ +A G I L ++ +E+I ++ ++ ++ ++ + + G +K+ + Sbjct: 560 INAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELS--DQNDRIVLVSKYGMIKQISVN 617 Query: 662 EFNRLRTAG-KVAIKLVDGDELIGVDLTSG-EDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 + +++ + L D DEL+ +L S E+++ + +RF + V G + Sbjct: 618 DLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNLTGLKSM 677 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 GVR I+L D+V+ + L +N K+ V+ +SRA +G S+ + + Sbjct: 678 GVRAIKLKTNDQVIGFDQIKNSIDQLVLVKNKQIKKLKVSLIENQSRANQG-KSLGLGKD 736 Query: 780 NGLVV 784 +V Sbjct: 737 KKPLV 741 Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 94/209 (44%), Gaps = 8/209 (3%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 E+ +++ +G +K +++ + ++K+ D L + S ++V + Sbjct: 498 EKKELYLVSSVDGLIKTIA---YDQNKQLNPTSLKIKQDDYLSDLIKVSSLNKVAFITNY 554 Query: 701 GKVVRFKESSVRAMGCNTTGVRGIRL---GEGDKVVSLI-VPRGDGAILTATQNGYGKRT 756 G VV ++ G+ L + +K+V L+ + + I+ ++ G K+ Sbjct: 555 GNVVVINAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELSDQNDRIVLVSKYGMIKQI 614 Query: 757 AVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVG 816 +V + ++TK + + + + LV + D ++++IT +R ++E+++ G Sbjct: 615 SVNDL-VNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNLTG 673 Query: 817 RNTQGVILIRTAEDENVVGLQRVAEPVDE 845 + GV I+ ++ V+G ++ +D+ Sbjct: 674 LKSMGVRAIKLKTNDQVIGFDQIKNSIDQ 702 >UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaproteobacteria RepID=PARC_CAUCR Length = 759 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 267/742 (35%), Positives = 403/742 (54%), Gaps = 74/742 (9%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 I + E L YL YA+S I RALPDVRDGLKPVHRRVLYAM+ + + + A +K Sbjct: 17 RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A+VVG+V+G +HPHGD+++YD +VR+AQ FS R LV+GQGNFG+IDGDSAAAMRYTE + Sbjct: 77 AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + + A L+ ++++ VDF YDG ++ P V+P+ PNLL NGSSGIAVGMAT+IPPHN Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRAR 245 E+I+ C + + D + L+E +PGPDFPT +I R + E Y TGRG V +RA+ Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E E D G I+V EIPYQV K+ L+E++A+L+ K+ + +RDES +D +R+V+ Sbjct: 257 WEKE-DTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAED-IRLVL 314 Query: 306 EVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVT 363 E K ++ EV++ +L+ + L+ F +N+ L G P +M +K + AF+ HRREV+T Sbjct: 315 EPKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLT 374 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR L K R HIL+ L +A N+D +I ++R+ P K L+ Sbjct: 375 RRARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKP---KEKLIET---------- 421 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + LT+ QA AIL+ RL++L LE ++ E+ EL++ Sbjct: 422 ------------------------FGLTDIQADAILNTRLRQLAKLEEMEIRREHAELVE 457 Query: 484 QIAELLRILGSADRLMEV-------IREELELVREQFGDKRRTEITAN---------SAD 527 + +L +L S + ++ +R L ++ R T +T AD Sbjct: 458 ERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGRSVFGEAPQVDAD 517 Query: 528 INLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 +E +I +E + + LS +G+++ S + KE D + L+ A T Sbjct: 518 AAIEAMIVREPITIILSERGWIRAAKGKI--------DDPSELKFKEGDKLGFLVPAETT 569 Query: 588 DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF 647 D +L FSS GR +++ +LP A G P+ ++ L+ +I + P F+ G K Sbjct: 570 DKLLIFSSDGRFFTLGCDKLPSAR--GHGEPVRMMIELDDKVKIIDVFP---FKAGRKRI 624 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 +A+ G E R AGK + + G+E L + D++ + GK++ F Sbjct: 625 LASKGGYGFLMPEEEALANRKAGKQVLNV--GNEGAAFCLEAVGDQLAVIGDNGKILIFP 682 Query: 708 ESSVRAMGCNTTGVRGIRLGEG 729 + M GV+ EG Sbjct: 683 LEELPEMPR-GKGVKLQAYREG 703 Score = 59.1 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 7/159 (4%) Query: 674 IKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI-RLGEGDKV 732 +K +GD+L + D++++FS++G+ + + + VR + L + K+ Sbjct: 552 LKFKEGDKLGFLVPAETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKI 611 Query: 733 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 + + + + A++ GYG E +A K V+++ E + AV Sbjct: 612 IDVFPFKAGRKRILASKGGYGFLMPEEEALANRKAGKQVLNVG-NEGAAFCLEAV----G 666 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE 831 DQ+ +I D G ++ + E+ + R +GV L E Sbjct: 667 DQLAVIGDNGKILIFPLEELPEMPR-GKGVKLQAYREGG 704 >UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G39_TROWT Length = 824 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 270/830 (32%), Positives = 423/830 (50%), Gaps = 59/830 (7%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +IT V++ +++ S+L+YA SVI RALPD RDGLKPV RR+LY M+ +G +KA+ Sbjct: 18 NEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHV 77 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARV G+V+GK HPHGD+A+YDT+VRM+Q F++R L+DG GNFGS+ D AA RYTE Sbjct: 78 KCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSL-NDGPAASRYTE 136 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL++ A ++ DLE VDFV NYD P+V+P +PNL+VNGSSGIAVGMAT+IPP Sbjct: 137 ARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPP 196 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E + + + + S+E +M+ +PGPDFPT +II G+ +E Y TG+G IRA Sbjct: 197 HNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKGSFKIRA 256 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRI 303 + ++ A G +++ E+PY V R+IEKI + V R++GI + D SD+ +G+++ Sbjct: 257 KISIDY-AGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKL 315 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 VI +K + V++NLY T L+ SF +N VAL G+PK + + D++ F+ HR V+T Sbjct: 316 VIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDMLKVFIDHRVCVIT 375 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ F L + R H+++ L +AL +ID I +IR++ EA+ L+ Sbjct: 376 RRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMK----------- 424 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 +T QA+ ILD+RL LT L KL E +EL Sbjct: 425 -----------------------CLNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRK 461 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 +L IL +++ ++ +EL+ V ++ RRT + ++ + ++ V L Sbjct: 462 TTQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRTILESSVKSKKQKTDYPRQ---VVL 518 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDF----IDRLLVANTHDHILCFSSRGRV 599 + G++ ++ + +V I +S G+V Sbjct: 519 TTNGFIFTIEVNNDLISELSQPETFDMAFNTHSEPLRVVKSSIVCGVRSRIGALTSAGKV 578 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 LP G + L LE DE + E + + +AT++G VK+ Sbjct: 579 IPFTPIGLPVLDSGF--VTAKSFLGLENDEEAVLLF---ELHQKESLAIATSSGIVKRVT 633 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDL-TSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 RT I L GD ++G S + +A+G ++ + V Sbjct: 634 -PAIWPDRTE--RVITLSAGDRVVGAARGVSSCGYFVFITAKGNLLHYSAGLVNPQNRPA 690 Query: 719 TGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GV G+ L + D+V+S T + + ++ Y T+ RAT+GV K Sbjct: 691 RGVAGVTLKDDDDRVISFGYTEDVDRANVLTVSKRMTTSRLSSYQTRGRATRGVQCHKFL 750 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 + + A+ + + I + G +V + + S+ ++ GV R Sbjct: 751 KGEEWLHAAIV---GENLAAIDNLGNVV--AIGKSSVTAKSCAGVKQYRL 795 >UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsia RepID=PARC_RICBR Length = 736 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 284/775 (36%), Positives = 414/775 (53%), Gaps = 68/775 (8%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I ++ L YL YA+S I+ R+LPDVRDGLKPVHRR+LYAM L + N YKK Sbjct: 5 KIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKC 64 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDVIGKYHPHGD AVYDT+VR+AQ FSLRY L+DGQGNFGSIDGD+AAAMRYTE R Sbjct: 65 ARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTESR 124 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + +I LM D++K+TVDF YD ++ P +MP PNLL NGS GIAVGMATNIPPHN Sbjct: 125 MTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPHN 184 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYRTGRGKVYIRAR 245 L E+ + + ID I +M I GPDFPT II + I AY TGRG +RAR Sbjct: 185 LHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVRAR 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E E + G I+V EIPYQV K++LIE+IA L+K+K++ +S +RDES D +R+VI Sbjct: 245 WEKE-ELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRLVI 302 Query: 306 EVK-RDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVT 363 E + R ++V+ +L+ T L+ +NM + + PK+MN+ +++ F+ HR+ ++T Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNIIT 362 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ + L K + R ILE L +A N+D II++IR P Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPK------------------- 403 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + + LTE Q +AIL+ RL+ L LE ++++ E+ L Sbjct: 404 ------------------AIMMQRFQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQK 445 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFG-----DKRRT---EITANSADINLEDLIT 535 Q A L IL + L +V+++E++ V+ +FG RRT ++T + +++ IT Sbjct: 446 QQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFIT 505 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 +E + + S G+V + + S+ + KE D +L A T D IL SS Sbjct: 506 KEPITIICSKMGWV--------RSLKGHNNDLSSIKYKEGDAEKFILEAYTTDKILIISS 557 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 GR +++ + + G I L+ + ++ IT IL ++ + +A++ G Sbjct: 558 EGRFFTLLADNI--SKGKGTGESIKLLVDIGNND-ITEILV---YKPDHLLLLASSIGKG 611 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 E +GK + + DG I +G D V K++ F + M Sbjct: 612 FVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNG-DSVACIGESRKLLVFNIDEIPEM- 669 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 GV + + K++ + + + L+ G K R + G Sbjct: 670 KKGQGVTLQKF-KNAKLLDIKIFNREDG-LSWNSGGKVKLEKNIIAFLGKRGSTG 722 >UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6X2_MYCCR Length = 864 Score = 688 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 252/771 (32%), Positives = 405/771 (52%), Gaps = 43/771 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +I +++ + ++ YA VI RA+PDVRDGLKPV RR+LY+M +LG Sbjct: 1 MKTNLNQIINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKE 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSARVVGDVIGKYHPHGDS++YD +VRM+Q + + LVD GN GSID D AAAM Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+RL +I+ ++ L K + + N+D +EK P V+PT +PNLLVNG+ GIA G AT Sbjct: 121 RYTEVRLEEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL+EVI+G +A I +E I+ L IPGPDFPT I+ GI +A+ G+G++ Sbjct: 181 EIPPHNLSEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGGIVYDNGGISDAFSKGKGRI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + A+ E+ K +I + +IPY + KA LI +I ++ E++V GI + D+SD++G Sbjct: 241 SLVAKY--EIVNKNKDISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I I+++ DA ++V+N L +T +Q+ + N VA+ + PK+++L ++I ++ H + Sbjct: 299 ILISIDLEADANVDLVVNYLLQKTDMQIYYSYNSVAICNNSPKLVSLSEMIKYYLDHLKN 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + + ++L K++ R I++ D +I++IR + Sbjct: 359 IKLKEIDYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSK---------------- 402 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + T+ QA+AI +RL +L+ ++ E L E KE Sbjct: 403 -----------------IGVIKDLIAHFGFTQIQAEAIAQMRLYRLSKIDQENFLSESKE 445 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT--ANSADINLEDLITQED 538 L ++I L + + + + + L+ V+ FG R+T+I S IN EDLI E+ Sbjct: 446 LENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQPRKTQILKKDFSIKINHEDLIKDEN 505 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + ++ QGY K L + IK++DF+ L N D I +++ Sbjct: 506 IYFGITQQGYYKKISLKNFSLSD-----LDKYAIKKDDFLILLTKLNLKDKIFLVTNKAN 560 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + + +QL E + G + + +QDE I A + ++E + + + + +G K+ Sbjct: 561 LVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQINISENKNNSNIILVSKHGLAKRV 620 Query: 659 VLTEFNRLRTAGKVAI-KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 L LRT I KL + DELIG LT + + S + ++ E + G N Sbjct: 621 SLDSLFNLRTKKLTNIFKLKEHDELIGAYLTDNLANIAIISNLNRSLKVAEIDIPIYGRN 680 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 768 + GV+ L +G+++ I + + ++ +R Sbjct: 681 SAGVKLATLKKGEQIQLAYPIADGEKIAIIDSWASYEEISNSQITFGARGA 731 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 14/222 (6%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 ++ F T G KK L F+ L K AIK D LI + + +D++ L + + Sbjct: 502 KDENIYFGITQQGYYKKISLKNFS-LSDLDKYAIK--KDDFLILLTKLNLKDKIFLVTNK 558 Query: 701 GKVVRFKESSVRAMGCNTTGVRG---IRLGEGDKVVSLIVP---RGDGAILTATQNGYGK 754 +V + G + + + +V+ I + + I+ +++G K Sbjct: 559 ANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQINISENKNNSNIILVSKHGLAK 618 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 R ++ TK + +I + + ++GA D+ I +I++ ++ +I I Sbjct: 619 RVSLDSLFNLR--TKKLTNIFKLKEHDELIGAYLTDNLANIAIISNLNRSLKVAEIDIPI 676 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 GRN+ GV L + E + Q D E + ID A+ Sbjct: 677 YGRNSAGVKLATLKKGEQI---QLAYPIADGEKIAIIDSWAS 715 >UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaproteobacteria RepID=PARC_RHIME Length = 758 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 260/744 (34%), Positives = 399/744 (53%), Gaps = 73/744 (9%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I PV+++ L+ YL YA+S I+ RALPDVRDGLKPVHRR+++AM+ +G N ++K Sbjct: 12 DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K AR+VGDVIGK+HPHGD +VYD +VR+AQ FS RY +VDGQGNFG+IDGD+AAA RYTE Sbjct: 72 KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 ++ ++A L+ ++++ VDF Y+ ++ P V+P PNLL NG+SGIAVGMAT+IPP Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191 Query: 185 HNLTEVINGCLAYIDDEDISIEGLM--------EHIPGPDFPTAAII-NGRRGIEEAYRT 235 HN E+ + L I D ++E L+ I GPDFPT +I R + E+YRT Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRT 251 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 GRG +RAR VE D G I+V EIPYQV K+RLIEKIAEL+ +++ + +RDE Sbjct: 252 GRGGFRVRARWAVE-DLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDE 310 Query: 296 SDKDGMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAA 353 S +D +R+V+ K R +++ +L+ T+L+ +NM L G+ P++M L ++++ Sbjct: 311 SAED-VRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSE 369 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVAN 413 ++ HRREV+ RR+ L R IL +A NID +I +IR P Sbjct: 370 WLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPK--------- 420 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 V + LT+ QA+AIL++RL+ L LE + Sbjct: 421 ----------------------------AVMIERFGLTDVQAEAILNMRLRSLRKLEEFE 452 Query: 474 LLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSAD 527 + E+ L + AE+ +L S D+ + + E+ V+++F G +R T A AD Sbjct: 453 IRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPDAD 512 Query: 528 INL--EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585 + + +I +E + V +S +G++ A + S+ + K+ D + A Sbjct: 513 VEAIQQAMIEKEPITVVISEKGWI--------RALKGHIADTSSLQFKDGDGLKVSFPAQ 564 Query: 586 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK 645 T D IL F++ G+ Y++ +LP G P+ ++ +E D+ + + K Sbjct: 565 TTDKILIFTTGGKAYTLGGDKLPGGR--GHGEPLRIMVDMENDQDVLTAFV---HDPARK 619 Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 + +++ G ++ GK + + DE V G D + + K++ Sbjct: 620 LIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKG-DHLAVVGENRKMLV 678 Query: 706 FKESSVRAMGCNTTGVRGIRLGEG 729 F V M GVR R +G Sbjct: 679 FPLVQVPEMAR-GKGVRLQRYKDG 701 >UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z3_MYCS5 Length = 860 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 246/781 (31%), Positives = 409/781 (52%), Gaps = 43/781 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 ++ +I ++++ ++ + Y+ VI RA+PDVRDGLKPVHRR+LY+M LG D++K Sbjct: 4 KEIIEKIITKSVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDK 63 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSAR+VGDVIGKYHPHGD++VY+ ++ +AQ + + L+ GN GSID D AAMR Sbjct: 64 KFKKSARIVGDVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQAAMR 123 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE++LAKIA+ ++ D++K+TV F+ N+D +E P V+P+ PNLLVNGS GIA+GMAT Sbjct: 124 YTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATE 183 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG-KV 240 +PPHNL E+I+ C+ I S L + GPDFPT +I G +GI EA GR K Sbjct: 184 MPPHNLGEIIDACVYKIKHPKASYSELSNFVLGPDFPTGGVIKGTKGIAEALENGRNEKN 243 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I+ + E+ K + I + EIPY V K +L+ +I +++ K ++GI ++D SD+DG Sbjct: 244 KIKLFCKYEIYTKGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDG 303 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+I + ++ E +LN L+S+TQ+Q+++ N + + + P +MNL+++I++++ H + Sbjct: 304 INILITLDINSNEESILNYLFSKTQMQITYSYNNIVIDNNSPTLMNLENLISSYIAHIKN 363 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V T ++L KA+ R I+ +IELIR Sbjct: 364 VKTLSLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSK---------------- 407 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ++ T+ QA++I +LRL KL+ + E L E E Sbjct: 408 -----------------MGVVNNLIQVFNFTKLQAESIAELRLYKLSQTDKEIYLKEKVE 450 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI--NLEDLITQED 538 + + I + +L + + E++ ++++F R+T+I ++ N DL+ +E Sbjct: 451 VKETINIIENLLNNEKEFNNFLINEIKAIKKEFSVPRKTQIEEKDFEVSYNKLDLVKEEI 510 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + V++S G++K E +KE+D + NT + +LCF++ G Sbjct: 511 INVSISKNGFIKRFSDKVLENNE-----WKNYALKEKDNLVFFSKVNTVNFLLCFTNLGN 565 Query: 599 VYSMKVYQLPEATRGARGRPIVNLL-PLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 + +YQ+ E G I + DE I +++ V++FEE + V + T G K+ Sbjct: 566 YVIVAIYQIQEVKWKDLGNNINLFASDIRPDEEIVSVIEVSDFEENLSVMLGTKQGYFKR 625 Query: 658 TVLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 +L +F R T A+ L + D LI LT+ + ++ + + +F ES + Sbjct: 626 VMLKDFLVSRFTKKYTAMPLNEDDYLIKAKLTNLDSYLVAITENSIISKFSESEIMFYST 685 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKV 776 G + I GDK+ + + I + + A+ + KG Sbjct: 686 KARGSKAIYFSVGDKLSNFTIASYGDEIFAFSSDLNYFYFNEADIVLTPKNIKGRNIFDK 745 Query: 777 T 777 Sbjct: 746 K 746 >UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria RepID=PARC_SYNY3 Length = 920 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 279/917 (30%), Positives = 453/917 (49%), Gaps = 118/917 (12%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + +I P ++ EE++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM LG ++ ++ Sbjct: 8 SGQIIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFR 67 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARVVGDV+GKYHPHGD +VYD +VRM Q FS RY L+ G GNFGS+D D AAMRYTE Sbjct: 68 KCARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTE 127 Query: 125 IRLAKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RLA IA ++ + + VDF N+D +++ P V+P ++P LL+NG SGIAVGMAT+IP Sbjct: 128 TRLAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIP 187 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EV++G + I+ D+S + L + IPGPDFPT I GI +AY+TGRG + +R Sbjct: 188 PHNLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQAYQTGRGLIPVR 247 Query: 244 ARAEVEVDAK-----TGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 + +E R I++ E+P+QVNKA IEKIA LV + +++GIS LRDESD+ Sbjct: 248 GVSHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDR 307 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 GMR+VIE+KRDA +L LY T LQ +FG+ +AL + QP M+L+ I+ F++ R Sbjct: 308 TGMRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMSLRQILQEFLQFR 367 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 + + R+ EL + R R +L L + L N+D +IE++R A AK L Sbjct: 368 EDTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQER----- 422 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 ++ QQ AIL + ++++TGLE EKL E+ Sbjct: 423 -----------------------------LGISLQQGDAILGMPMRRITGLEREKLQQEH 453 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT---------------- 522 +L +I +L ++G ++ +++EL ++++F D+RRT+I Sbjct: 454 TDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFADERRTKILQGMPAKIEPLPVNQDP 513 Query: 523 -------------ANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSA 569 A +++ QE +V+ S P ++ + K + Sbjct: 514 LPEATIPPVESQSAPEEELDSPGEPEQEQLVLENSSPPTADSAPEAKQDDLNLAVK-PTP 572 Query: 570 ARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE--- 626 +K+E ++A TH ++ + + P + P L + Sbjct: 573 KTVKQEAQPSPEVIA-THSKLVSVAEKN----------PLTLFTPQTPPAEAFLSINLQG 621 Query: 627 ----QDERITAILPVTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGKVAIKL 676 E +T+ ++ + + +G + + L +++ Sbjct: 622 EIAWHPEELTSANSFEPLDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQI 681 Query: 677 VDGDELIGVD---------LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG 727 + +++L S +G+V ++ +G G+ ++L Sbjct: 682 LPKSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGRVKLLAGQELQELGP--RGLSLMKLK 739 Query: 728 EGDKVVSLIVP---------RGDGAILTATQNGYGKRTAVAEYPTK--SRATKGVISIKV 776 GD + + ++ AT NG R A+ S + +G ++++ Sbjct: 740 NGDLLQFAQLVTPVNPASAQNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRL 799 Query: 777 TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR-TAEDENVVG 835 +VG + D+++++T AG + ++ + + G +++ T++ + ++ Sbjct: 800 RA-TESLVGVLMASPGDRVLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFTSKADRLLT 858 Query: 836 LQRVAEPVDEEDLDTID 852 + + T D Sbjct: 859 MVAANQGAQSPQSSTYD 875 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 104/278 (37%), Gaps = 22/278 (7%) Query: 578 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILP- 636 +D+ + ++ G+ + + + +P P++ +LP T + Sbjct: 639 LDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTR--IPLLQILPKSAQRDATTVTFQ 696 Query: 637 --VTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLT------ 688 + E+ + + + G VK E L G +KL +GD L L Sbjct: 697 GFLPPPEQPQDLLLVSQQGRVKLLAGQELQELGPRGLSLMKLKNGDLLQFAQLVTPVNPA 756 Query: 689 ---SGEDEVMLFSAEGKVVRFKESSVRAM--GCNTTGVRGIRLGEGDKVVSLIVPRGDGA 743 + +++ ++ G+++RF + V + G +RL + +V +++ Sbjct: 757 SAQNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLRATESLVGVLMASPGDR 816 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ------IMM 797 +L TQ GYGK+ +A + G ++ T + ++ V + Q Sbjct: 817 VLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFTSKADRLLTMVAANQGAQSPQSSTYDF 876 Query: 798 ITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 ++ L + + G++ G L+ E E+++ Sbjct: 877 YSNQQRLHSVQADQFQPWGKDGFGDRLVDLNEGEHLIT 914 >UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteobacteria RepID=PARC_PSEAE Length = 754 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 262/784 (33%), Positives = 418/784 (53%), Gaps = 75/784 (9%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + ++ E + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG D + + Sbjct: 8 SLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKH 67 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRY 122 KKSAR VGDV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D S AAMRY Sbjct: 68 KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 127 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL++ + L+++L + TVD+V N+DGT P V+P ++PNLL+NG++GIAVGMAT++ Sbjct: 128 TEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDV 187 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVY 241 PPHNL EV + C+ +D ++ L EH+PGPDFPT A II R +++ Y TGRG V Sbjct: 188 PPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVR 247 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG- 300 +RA VE I++H +P+QV+ ++++E+IA ++ K++ ++ LRDESD + Sbjct: 248 MRAVYRVEDGD------IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENP 301 Query: 301 MRIVIEVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHR 358 RIVI + + E ++ +L++ T L+ S+ +N+ + G+P++ +L+ +++ +++ R Sbjct: 302 TRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLSEWLQFR 361 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 V RR F L K R H+L+ L +A N+D +I +IR P K L+ Sbjct: 362 IGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQP---KAVLMER----- 413 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + L+E QA ILD RL++L LE K+ E Sbjct: 414 -----------------------------FELSEVQADYILDTRLRQLARLEEMKIRGEQ 444 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT--ANSADINLEDLITQ 536 +ELL + L +LGS +L +++REEL E +GD RR+ I A + ++ +L+ Sbjct: 445 EELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELMPT 504 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 E V V LS +G+V+ + +A + K D ++ + + S Sbjct: 505 EPVTVVLSEKGWVRCAKGHDIDA--------AGLSYKAGDGFKAAAPGRSNQYAVFIDST 556 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 GR YS+ + LP A +G P+ L +L ++ +A+ G Sbjct: 557 GRSYSLPAHSLPSAR--GQGEPLSGRLTPPPGASFECVLLP---DDDALFVIASDAGYGF 611 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG--EDEVMLFSAEGKVVRFKESSVRAM 714 + AGK + L +G ++ +D + + EG+++ FK S + + Sbjct: 612 VVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQL 671 Query: 715 GCNTTGVRGIRLGEGDKVVS--------LIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 766 G G + I + G++V S ++P G +L A + + E+ R Sbjct: 672 G-KGKGNKIIGI-PGERVASREEYLTDLAVLPAGATLVLQAGKRTLSLKGDDLEHYKGER 729 Query: 767 ATKG 770 +G Sbjct: 730 GRRG 733 >UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobiales RepID=D0B2I0_BRUME Length = 770 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 268/761 (35%), Positives = 405/761 (53%), Gaps = 89/761 (11%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D I V+++ L+ YL YA+S I+ RALPDVRDGLKPVHRR+++AM +L + ++A Sbjct: 10 DGEEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQA 69 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Y K AR+VGDV+GK+HPHGD+++YD +VR+AQ F++RY LVDGQGNFG+IDGD+AAAMRY Sbjct: 70 YAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRY 129 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R+ ++A L+ + + +DF Y+ ++ P V+P PNLL NGS+GIAVGMATNI Sbjct: 130 TEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNI 189 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLME----------------------HIPGPDFPTA 220 PPHN+ E+ + L I+ D +E L+ + GPDFPT Sbjct: 190 PPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTG 249 Query: 221 AIINGRRG-IEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAE 279 I+ G I EAYRTGRG +RAR E + G I+V EIPYQV K+RLIEKIAE Sbjct: 250 GILVEEHGNILEAYRTGRGAFRVRARWHKE-EGNRGTWVIVVTEIPYQVQKSRLIEKIAE 308 Query: 280 LVKEKRVEGISALRDESDKDGMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALH 338 L+ K++ + +RDES +D +RIV+E K R E+++ +L+ T+L+ +NM L Sbjct: 309 LLLAKKLPLLDDIRDESAED-IRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLS 367 Query: 339 HGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELI 397 HG+ P +++L ++ ++ HR+EV+ RR+ F L + R IL +A N+D +I +I Sbjct: 368 HGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRII 427 Query: 398 RHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQA 457 R P K L+ + LT+ QA++ Sbjct: 428 REEDEP---KQELM----------------------------------RAFELTDVQAES 450 Query: 458 ILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD-- 515 IL++RL+ L LE ++ E+ +L + +L +L S R + I E++ VRE+FG Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 510 Query: 516 ---KRRTEITANSADINLED----LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKS 568 KRRT A++ +LED +I +E V + +S +G+++ + S Sbjct: 511 RLGKRRTTF-AHAPTHDLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLAD--------FS 561 Query: 569 AARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQD 628 KE D + A T D +L F++ G+ +++ LP G PI L+ +E D Sbjct: 562 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGR--GHGEPIRILVDMEND 619 Query: 629 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLT 688 + I + K+ + + G +E GK + + DE Sbjct: 620 QDILTAFV---HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRV 676 Query: 689 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 SG D + + K++ F S + M GVR + +G Sbjct: 677 SG-DHIAVVGENRKMLVFPLSDIPEMTR-GKGVRLQKYKDG 715 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 86/223 (38%), Gaps = 21/223 (9%) Query: 647 FMATANGTVKKTV--LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVV 704 + + G ++ L +F+ + +GD+L D+++ F+ GK Sbjct: 542 IVVSEKGWLRAMKGHLADFST--------LSFKEGDKLKLAFHAETTDKLLFFTTGGKFF 593 Query: 705 RFKESSVRAMGCNTTG--VRGIRLGEGDK-VVSLIVPRGDGAILTATQNGYGKRTAVAEY 761 +++ G G +R + E D+ +++ V +L + G G +E Sbjct: 594 TIGANTLP--GGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEA 651 Query: 762 PTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQG 821 +R K V+++K + L Q D I ++ + ++ +S+I + R +G Sbjct: 652 VANTRKGKQVMNVKAPDEAKLC----QRVSGDHIAVVGENRKMLVFPLSDIPEMTR-GKG 706 Query: 822 VILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAP 864 V L + + V ++ A D+ D + +E+ Sbjct: 707 VRLQKYKDGG-VCDVRTFAIADGLSWQDSADRTFNRSKEELVE 748 >UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hyopneumoniae RepID=Q4A8X9_MYCH7 Length = 846 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 223/791 (28%), Positives = 392/791 (49%), Gaps = 48/791 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+ + +E+ L ++ Y+ VI RA+PDVRDGLKPV RR+LY+M LG + Sbjct: 1 MNKSLDSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNS 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVGDVIGKYHPHGD ++YD +VR+AQ + + LV+ GN GSID D AAM Sbjct: 61 KNYKKSARVVGDVIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+RLA+I+ L+ + K V F N+D +EK P ++P PNLL+NG+ GIA G AT Sbjct: 121 RYTEVRLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL EVI+ + I + I+IE + I GPDFPT I+ G+ GI +A++TG+GK+ Sbjct: 181 EIPPHNLGEVIDATILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I + ++ K G+ I + IP+ ++K+ LIE+I ++ + ++ GI + D+SD++G Sbjct: 241 KISSDYKIFE--KNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+IE+++D ++++N L +T LQ+ + N VA+ PK++++K++I ++ H R+ Sbjct: 299 VSILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRK 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + FEL K + R I+ D +I++IR + Sbjct: 359 IKLAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSK---------------- 402 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++ QA+AI +RL +L+ +E + L+E K Sbjct: 403 -----------------VGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKN 445 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRT--EITANSADINLEDLITQED 538 L IA +++ + D + + L ++ G R+T + IN ++L+ E Sbjct: 446 LEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEF 505 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 ++ G K + ++ DF + N + +++G Sbjct: 506 FYFWITKSGLYKKLDIK-----NSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGE 560 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + + V+Q+PE + L + +++I ++ FE + + K+ Sbjct: 561 IAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISKFSFAKRM 620 Query: 659 VLTEFNRLRTAGKVAI-KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 L + +++ I + +GDELI V L ++L + + + ++ S + N Sbjct: 621 NLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYTRN 680 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYP-----TKSRATKGVI 772 +TG++ R + + + + ++ N ++ + K + Sbjct: 681 STGIKIFRHRKNEFISASQTIESSESLAVIDFNSQFEKINTENLFFGNKILTPKNFKTKL 740 Query: 773 SIKVTERNGLV 783 ++ ++ ++ Sbjct: 741 DFSLSPKSIII 751 Score = 59.5 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 80/209 (38%), Gaps = 11/209 (5%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 ++ F T +G KK + +L +GD I + + + + + + + Sbjct: 502 KDEFFYFWITKSGLYKKL---DIKNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNK 558 Query: 701 GKVVRFKESSVRAMG-CNTTGVRGIRLG--EGDKVVSLIVPRG---DGAILTATQNGYGK 754 G++ + + N+ I LG +++S+ ++ ++ + K Sbjct: 559 GEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISKFSFAK 618 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 R + + + K + +I + ++ + I++IT ++ +SEI I Sbjct: 619 RMNLDQLMKIKQ--KKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPI 676 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAEPV 843 RN+ G+ + R ++E + Q + Sbjct: 677 YTRNSTGIKIFRHRKNEFISASQTIESSE 705 >UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteobacteria RepID=A4JTQ2_BURVG Length = 808 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 260/796 (32%), Positives = 396/796 (49%), Gaps = 77/796 (9%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + I + +YLDYAMSV+ GR LPDV DG KPV RR+LYAMN +G KSARVV Sbjct: 57 IPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARVV 116 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 GDV+GKYHPHGD + YD +VR+AQ FS+RY L+DGQGNFGS DGD AAAMRYTE RL Sbjct: 117 GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPF 176 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A L+A++++ TVDF NYDG + P ++P ++P LL+NG+SGIAVGMAT+IP HNL EV Sbjct: 177 ADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLREV 236 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVE 249 + C I D + +M +PGPD+P A II+ I + Y GRG + +RAR +E Sbjct: 237 ADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSLE 296 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGIS------------------A 291 G+ I V E+P+ V+ +++E+I EL K G + Sbjct: 297 -QLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLDS 355 Query: 292 LRDESD-KDGMRIVIEVKRDA-VGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLK 348 +RD+SD K +RIV E E ++N L + T L+ + +N+V + G+P+ + Sbjct: 356 VRDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGIV 415 Query: 349 DIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKT 408 + +V R VTRRT L + R HIL+ +A NID +I++IR + P K Sbjct: 416 PALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEP---KR 472 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 L+A ++L+E QA+ IL++RL++L Sbjct: 473 DLIAT----------------------------------FHLSEVQAEDILEIRLRQLAR 498 Query: 469 LEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI 528 LE K+ E +L D+ L +L + I +E+E +++FGD RRT I + Sbjct: 499 LEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKFGDDRRTLIESAEKVT 558 Query: 529 NLEDL-ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 + + + V + +S G+++ + G S K D + + T Sbjct: 559 SGAVVPTADDPVTIIVSRSGWLRARSGH--------GIDISTLTFKAGDDLLASIETRTS 610 Query: 588 DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF 647 + F + GR Y++ +P G P+ +L+ L+ R+T ++ + ++ Sbjct: 611 TSLAVFDTNGRCYNVASALIPTGR--GDGVPLTSLIELQGGGRLTHVIVI---DQTANYL 665 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 +A++ G + + AGK L G+ + +G D V + G++V F Sbjct: 666 IASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAG-DTVSAVCSGGRLVLFP 724 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT-AVAEYPTKSR 766 S V+ M GV+ + L + +V++ + G I++ T T + R Sbjct: 725 LSEVKVM-PKGKGVKLMELEARETLVAVAIGDGASCIVSTTSGKPIALTGTALDKYRLHR 783 Query: 767 ATKGVISIKVTERNGL 782 A KG + G Sbjct: 784 ARKGCQLPGKAKPTGF 799 Score = 56.1 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 25/235 (10%) Query: 609 EATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT 668 EA + G L+ E E++T+ V ++ V + + + R R+ Sbjct: 537 EADKQKFGDDRRTLI--ESAEKVTSGAVVPTADDPVTII----------VSRSGWLRARS 584 Query: 669 AGKVAI---KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV---R 722 + I GD+L+ T + +F G+ + + G GV Sbjct: 585 GHGIDISTLTFKAGDDLLASIETRTSTSLAVFDTNGRCYNVASALIP-TGR-GDGVPLTS 642 Query: 723 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 I L G ++ +IV L A+ GYG A A+ T+ +A K +++ G Sbjct: 643 LIELQGGGRLTHVIVIDQTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEP----GE 698 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 V+ D + + G LV +SE+ ++ + +GV L+ E +V + Sbjct: 699 VMHPPAKIAGDTVSAVCSGGRLVLFPLSEVKVMPK-GKGVKLMELEARETLVAVA 752 >UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaproteobacteria RepID=A1TLU5_ACIAC Length = 785 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 268/802 (33%), Positives = 399/802 (49%), Gaps = 98/802 (12%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK-------K 65 + + +YL+YA+SV+ GRALPDV DG+KPV RR+L+AM +G + + K Sbjct: 22 LAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKPVK 81 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVGDV+G++HPHGD + YD +VR+AQ FS RY L+DGQGNFGS DGD AAAMRYTE Sbjct: 82 SARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEA 141 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL +IA L+ ++++ TVDFV NYDG+ + P +P ++P L+NG+SGIAVG+AT IP H Sbjct: 142 RLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSH 201 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYRTGRGKVYIRA 244 NL E+ + C+A + + ++ E L +PGPD+P I G I++AYRTGRG + +RA Sbjct: 202 NLREIADACVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKVRA 261 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISA------------- 291 R ++E D G+ ++V E+P V+ +++E+I EL K G A Sbjct: 262 RWKIE-DLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKATVL 320 Query: 292 -----LRDESDKD-GMRIVIEVKRDAVGEV-VLNNLYSQTQLQVSFGINMVALH-HGQPK 343 +RDES KD +RIV E K V + ++ L + T L+ S IN+ + G+P Sbjct: 321 GVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMVGLDGKPV 380 Query: 344 IMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP 403 +L+ ++ ++ R++ +TRR+ L K DR HILE L NID +I +IR + P Sbjct: 381 QKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRASDEP 440 Query: 404 AEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRL 463 A + L+++QA+ IL++RL Sbjct: 441 KAA-------------------------------------LIERFRLSDRQAEDILEIRL 463 Query: 464 QKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA 523 ++L LE K+ E KEL ++ +L IL + L ++ +E+E +QF D RRT I A Sbjct: 464 RQLARLEAIKIEQELKELREEQGKLEDILANPASLRRLMVKEIEADAKQFADARRTLIQA 523 Query: 524 NSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR--IKEEDFIDRL 581 + E + E V V +S +G+V+ R G G A K D + Sbjct: 524 DKRA-TAEVKVVDEPVTVVVSQKGWVRA----------RQGHGHDAGTFAFKSGDALYGT 572 Query: 582 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE 641 T D ++ F S GRVYS+ V QLP A G+PI L+ LE + Sbjct: 573 FECRTVDTLIAFGSNGRVYSVAVSQLPGAR--GDGQPITTLIDLEAGTQPVHYFA---GP 627 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELI---GVDLTSGED------ 692 + +A + G + GK + L +G++L TSG Sbjct: 628 ANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGSQPLAPAT 687 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 752 V SA G+++ F+ + ++ M G+ I L D + I + G Sbjct: 688 HVCCASAGGRILTFEITELKQMANGGRGLMLIDLEPKDTLAGAAAYTRSVRIAGVGRGGK 747 Query: 753 GK----RTAVAEYPTKSRATKG 770 + R KG Sbjct: 748 ERDETLEIRSLNNARFPRGRKG 769 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 7/169 (4%) Query: 676 LVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR-GIRLGEGDKVVS 734 GD L G D ++ F + G+V S + + + I L G + V Sbjct: 563 FKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITTLIDLEAGTQPVH 622 Query: 735 LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER------NGLVVGAVQ 788 + A+L A GYG AV ++R K +S+ E+ G+ Sbjct: 623 YFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGSQP 682 Query: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 + + + G ++ ++E+ + +G++LI + + G Sbjct: 683 LAPATHVCCASAGGRILTFEITELKQMANGGRGLMLIDLEPKDTLAGAA 731 >UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria RepID=Q21V46_RHOFD Length = 796 Score = 671 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 273/804 (33%), Positives = 401/804 (49%), Gaps = 91/804 (11%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY------- 63 +N+ + +YL+YA+SV+ GRALPDV DG KPV RR+LY+M+ +G + Sbjct: 24 LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSAR+VGDV+G++HPHGDS+VYD VRMAQ FS RY L+DG GNFGS DGD AAAMRYT Sbjct: 84 VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYT 143 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RLAKI L+ ++++ TVDF+ NYDG+ + P +P ++P L+NG+SGIAVG+AT IP Sbjct: 144 EARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIP 203 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYI 242 HNL EV + C+A I +S L IPGPD+P II+ I EAYR+GRG + Sbjct: 204 SHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKC 263 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISA----------- 291 RAR ++E D G+ +++ E+P V+ R++E+I EL K G A Sbjct: 264 RARWKIE-DLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKAT 322 Query: 292 -------LRDESDKD-GMRIVIEVKRDAVGEV-VLNNLYSQTQLQVSFGINMVALH-HGQ 341 +RDES KD +R+V E K + + ++ L + T L+ S IN+ + G+ Sbjct: 323 LLSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGR 382 Query: 342 PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAP 401 P +L+ ++ ++ R++ + RR+ L K DR HILE A+ L NID +I +IR A Sbjct: 383 PTQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQAD 442 Query: 402 TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDL 461 P A L+A ++L+++QA+ IL++ Sbjct: 443 EPKAA---LIAR----------------------------------FHLSDRQAEDILEI 465 Query: 462 RLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI 521 RL++L LE K+ E L + +L ILGS L ++ +E+E + F D RRT I Sbjct: 466 RLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPSALRRLMIKEIEADAKTFADPRRTLI 525 Query: 522 TANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAA--RIKEEDFID 579 A + LE + E V V +S +G+V+ Q A R G A K D + Sbjct: 526 QAEKKAV-LEVKVVDEPVTVVVSQKGWVRAQKG---WASERAANGVLPAEYSFKAGDALY 581 Query: 580 RLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE 639 T D +L F S GRVYS+ V LP A G+P+ +LL LE ++ Sbjct: 582 DTFECRTVDTLLAFGSNGRVYSVAVALLPGAR--GDGQPMTSLLELEAGTQLLYYFA--- 636 Query: 640 FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED------- 692 + ++++ G + AGK + G+ L +G Sbjct: 637 GPAPATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEILCRPSPVAGGSGATPWPA 696 Query: 693 --EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQN 750 V SA G+++ F+ S ++ M G+ I L + D++ I + Sbjct: 697 ATHVACASAGGRILTFEISQLKTMATGGRGLMLIDLEDKDRLAGACAYTRSVKIEGLGRG 756 Query: 751 GY----GKRTAVAEYPTKSRATKG 770 G R KG Sbjct: 757 GKPRDETLEIRSLNNARALRGRKG 780 >UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma RepID=PARC_MYCPN Length = 789 Score = 671 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 240/804 (29%), Positives = 397/804 (49%), Gaps = 56/804 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + + IE+ S+ YA +I RALPD+RDGLKPV RR+LY M +G Sbjct: 1 MEKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPT 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 YKKSAR VG+++GKYHPHGD+++YD IVRM+Q + + GN GSIDGD+AAAM Sbjct: 61 SPYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+ EL+ D+EK+ V FV+N+D +E P V+PT +PNL +NG+SGIA G AT Sbjct: 121 RYTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NI PHN+ E+++G I++ D ++ +++ + GPDFPT ++ + + Y+TG+GK Sbjct: 181 NIAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKF 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I+A+ E + G+ I++ EIPY+ KA ++++I EL+ + ++ + ++ D SD+ G Sbjct: 241 VIQAKY--ETNTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RI+I K + ++ L+ TQLQV+F +N + + P + L F+ E Sbjct: 299 IRIIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ ++L A R I++ L A++ ID II LIR A +AKT L+ Sbjct: 359 LIINSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDK------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y T QA+AI+ LRL +LT + + L E KE Sbjct: 412 ---------------------------YAFTLNQAEAIVSLRLYQLTNTDIKVLFAEQKE 444 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQED 538 L I R++ ++++ + ++QF RR +I + D I ++ Sbjct: 445 LEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDFIEHKE 504 Query: 539 VVVTLSHQG-YVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSR 596 V + +SH G Y K++P K K E D + V D+ +S Sbjct: 505 VGLLISHDGIYFKFEP---------EQLAKHLVEFKSEQDQLIFGGVVQNSDYFFMVTSL 555 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERIT-AILPVTEFEEGVKVFMATANGTV 655 G + ++ +Y+ T+ + L +DE++ A + + E + + + G V Sbjct: 556 GNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLLVLTSQCGMV 615 Query: 656 KKTVLTEFNRLRT-AGKVAIKLVDGDELIGVDLTSGED--EVMLFSAEGKVVRFKESSVR 712 K+ L++ + + L + D+L+ + + + V L S+ F + Sbjct: 616 KRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFATFLAEEIP 675 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 + GV+GI+L +KV + + + A++ +G V E SR + G Sbjct: 676 IISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYNFEVVELAVASRMSVGK- 734 Query: 773 SIKVTERNGLVVGAVQVDDCDQIM 796 K+ + V + +I+ Sbjct: 735 --KLIPKTKTPVSCFAANKHSEII 756 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 87/240 (36%), Gaps = 24/240 (10%) Query: 630 RITAILPVTEFEEGVKV------FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELI 683 +I ++ + ++ + + + +G K + V K + D+LI Sbjct: 484 QIVGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLA----KHLVEFK-SEQDQLI 538 Query: 684 GVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR---LGEGDKVVSLIVPRG 740 + D + ++ G ++ + + L E +K+V + Sbjct: 539 FGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNP 598 Query: 741 D----GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIM 796 D ++ +Q G KR +++ + K + + ER+ LV VQ +++ Sbjct: 599 DKMEQQLLVLTSQCGMVKRVELSKVINTKQ-IKSSCCMALRERDKLVNAFVQTKGEPKLV 657 Query: 797 -MITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 +++ + + EI I+ GV I+ +E V R A P+ + D + S Sbjct: 658 CLVSSSNSFATFLAEEIPIISNKGIGVKGIKLKAEEKV----RFAMPLQDNDALVVINSD 713 >UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBL7_9GAMM Length = 749 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 269/799 (33%), Positives = 402/799 (50%), Gaps = 90/799 (11%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 + ++ +YLDY+M VI+ RALP + DGLKPV RR++YAM+ LG +KKSAR Sbjct: 7 EQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSAR 66 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRL 127 VGDVIGKYHPHGDSA Y+ +V MAQ F+ RY LVDGQGN+GS D S AAMRYTE RL Sbjct: 67 TVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESRL 126 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A L+A+LE+ TV++V N+DGT + P +P ++PN+L+NG SGIAVGMATN+ PHNL Sbjct: 127 TGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHNL 186 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARA 246 EV+ C A I D ++ + LM++IP PDFPT +++ R I YRTGRG V +RA Sbjct: 187 GEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRATW 246 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG-MRIVI 305 +E II+ ++PYQV+ +++ E+IA+ ++ K++ + LRDESD + +R+V+ Sbjct: 247 HLEDG------NIIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVL 300 Query: 306 EVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVT 363 + + E ++ +L++ T L+ + M + G+P++ NL I+ ++ +R E V Sbjct: 301 VPRSNRVDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVR 360 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR L +R HIL+ L +A N+D II +IR T E + L+A Sbjct: 361 RRLNHRLHAVNERLHILQGLLIAYLNLDEIIRIIR---TEDEPRPVLMAT---------- 407 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + L+E QA+AIL+ RL+ L LE ++ E + L Sbjct: 408 ------------------------FALSEAQAEAILNTRLRHLARLEEIQIRAEQEALAA 443 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DLITQEDVVV 541 + L +L S +RL+ +I +EL +GD RRT I A + L+ +L E V + Sbjct: 444 EQQHLHELLQSRERLLTLIADELAADAATYGDARRTVIIEREAAVALDETELTPSEAVTL 503 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVANTHDHILCFSSRG 597 LS G++ RGGKG +A K D + ++ + G Sbjct: 504 ILSKMGWI------------RGGKGHAIDGAALTYKNGDAYLTQISGRSNQQACLLADNG 551 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 R Y++ ++ LP A + G P+ + + ++ I+ E + +A NG Sbjct: 552 RSYTLALHGLPSAR--SYGEPLSSSMSIDAS---AHIIAAAIIEPERRYLIAADNGYGFL 606 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGV-DLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 E +GK I I + L GE +++ S EG+V + + Sbjct: 607 IPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPAEEIPELA- 665 Query: 717 NTTGVR------------GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTK 764 G + GIRL L VPRG L + + R E+ Sbjct: 666 KGKGSQTLAIAKKTYDADGIRLAH-----ILAVPRGRDITLHSGKQKLTIRANEREHYLT 720 Query: 765 SRATKGVISIKVTERNGLV 783 R KG K R + Sbjct: 721 PRGHKGNWLPKNYRRIDHI 739 >UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphaproteobacteria RepID=C6XHT3_LIBAP Length = 753 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 275/794 (34%), Positives = 415/794 (52%), Gaps = 68/794 (8%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KK Sbjct: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE Sbjct: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R+ ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP H Sbjct: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRA 244 N+ E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RA Sbjct: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 R VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV Sbjct: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 Query: 305 IEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVV 362 + K R ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ Sbjct: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RR+ F ++ R IL+ L +A NID II +IR+ P Sbjct: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------ 414 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 V + LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 415 -------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGD-----KRRT---EITANSADINLEDLI 534 + ++ +L S + I E+ V+E F +RRT E++ + +I Sbjct: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 Query: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594 +E + V +S++G+++ + SA KE D + L A+T D IL S Sbjct: 516 EKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLS 567 Query: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654 + G+ Y++ L G I L+ L ++ I ++ K+ + ++ G Sbjct: 568 TDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622 Query: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 +E GK +K+ +++ V +G D V + K++ F + M Sbjct: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681 Query: 715 GCNTTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 GVR +G V+ + G I + Y + R G + Sbjct: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSL 739 Query: 773 SIKVTERNGLVVGA 786 K R+G + + Sbjct: 740 VPKGFPRSGKFLSS 753 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 48/338 (14%), Positives = 114/338 (33%), Gaps = 38/338 (11%) Query: 517 RRTEITANSADINLEDL-------ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSA 569 RR+ + D +E L + ++++ + ++ K +S + Sbjct: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 Query: 570 ARIKEEDFIDRLLVANTHDHILC-------FSSRGRVYS----MKVYQLPE--ATRGARG 616 R++ ++ + + D++L + G+ ++ ++ E + G Sbjct: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 Query: 617 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL 676 R + + ++ A L E+ + + G ++ + + A+ Sbjct: 494 RRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHF 545 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG---IRLGEGDKVV 733 +GD L D ++L S +GK ++ + G I L +V Sbjct: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 Query: 734 SLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD 793 + V +L + G +E +R K + + E+ LVV D Sbjct: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GD 659 Query: 794 QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE 831 + ++ + L+ + +I + R +GV L + Sbjct: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696 >UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Variovorax paradoxus S110 RepID=C5CST5_VARPS Length = 798 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 270/809 (33%), Positives = 404/809 (49%), Gaps = 91/809 (11%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK------- 61 T + + + +++YL+YA+SV+ GRALPDV DG KPV RR+LY+M+ +G + Sbjct: 18 TTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANGTVGA 77 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 KSARVVGDV+G++HPH D A YD +VRMAQ FS RY L DGQGNFGS DGD AAAMR Sbjct: 78 KPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDGDGAAAMR 137 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RLA+I L+ ++++ TVDF+ NYDG+ + P ++P ++P L+NG+SGIAVG+AT Sbjct: 138 YTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATE 197 Query: 182 IPPHNLTEVINGCLAYID-DEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGK 239 IP HNL E+ + C+A I + +S E L++ +PGPD+P A II+G I +AYRTGRG Sbjct: 198 IPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYRTGRGS 257 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISA-------- 291 + +RAR ++E D G+ ++V+E+P V+ +++E+I E+ K G A Sbjct: 258 LKVRARWKIE-DLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQTQL 316 Query: 292 ----------LRDESDKD-GMRIVIEVKRDAVGEVV-LNNLYSQTQLQVSFGINMVAL-H 338 +RDES KD +R+V E K + + + L +QT L+ S IN+ + Sbjct: 317 KAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTMVGI 376 Query: 339 HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIR 398 G+P +L+ ++ ++ R V +R+ F L K DR HILE + L NID +I +IR Sbjct: 377 DGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVIAIIR 436 Query: 399 HAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI 458 A P A L+A + L+E QA+ I Sbjct: 437 AAEDPKAA---LIAR----------------------------------FNLSEVQAEDI 459 Query: 459 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 518 L++RL++L LE K+ + EL + +L ILGS L ++ +E+E + F D RR Sbjct: 460 LEIRLRQLARLEGIKIQQQLDELRTEQKKLEDILGSPAALRRLLVKEIEADAKTFEDPRR 519 Query: 519 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 578 T I A + E + E V V +S +G+V+ Q E G K D + Sbjct: 520 TLIQAEKRAVA-EVKVVDEPVTVIVSQKGWVRAQKGWASEKAAGNGGTAPEYSFKSGDTL 578 Query: 579 DRLLVANTHDHILCFSSRG----RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAI 634 + D +L F S RVY++ V LP A G+P+ L+ L+ +T Sbjct: 579 YGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLPGAR--GDGQPVTTLIELDAGTHVTHF 636 Query: 635 LPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED-- 692 G V +A G + + GK I + +G++L L G Sbjct: 637 FA---GPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQLCRPSLVGGASGA 693 Query: 693 -------EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAIL 745 V S G+++ F + ++++ G+ I L D + I Sbjct: 694 EPMPAATHVACASTGGRILTFDIAELKSLPKGGRGLTLIDLDAKDTLAGAAAYTRSVKIE 753 Query: 746 TATQNGYGK----RTAVAEYPTKSRATKG 770 + G + SRA KG Sbjct: 754 GIGRGGKERDETLEIRTLNNARGSRARKG 782 Score = 52.6 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 22/274 (8%) Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + V ++ EA P L+ E+ A+ V +E V V + G V+ Sbjct: 501 RLLVKEI-EADAKTFEDPRRTLIQAEK----RAVAEVKVVDEPVTVI-VSQKGWVRAQKG 554 Query: 661 TEFNRLRTAGKVA--IKLVDGDELIGVDLTSGEDEVMLF-SAEGKVVRF---KESSVRAM 714 + G A GD L G D +++F SA+ K VR +S+ Sbjct: 555 WASEKAAGNGGTAPEYSFKSGDTLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLPGA 614 Query: 715 GCNTTGVR-GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 + V I L G V ++L A GYG V ++ R K I Sbjct: 615 RGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGGKAFID 674 Query: 774 IKVTER------NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 + E+ G GA + + + G ++ ++E+ + + +G+ LI Sbjct: 675 VGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKGGRGLTLIDL 734 Query: 828 AEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDE 861 + + G V ++ I E D+ Sbjct: 735 DAKDTLAGAAAYTRSVK---IEGIGRGGKERDET 765 >UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria RepID=PARC_HAEIN Length = 747 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 247/786 (31%), Positives = 407/786 (51%), Gaps = 73/786 (9%) Query: 1 MSDLARE-ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDW 59 M+++ E I + + + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG + Sbjct: 1 MTNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNA 60 Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAA 118 YKKSAR VGDV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D S A Sbjct: 61 TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 120 Query: 119 AMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178 AMRYTE RL+KI+ L+ +L + TVD+ N+DGT P +P ++P++L+NG++GIAVGM Sbjct: 121 AMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGM 180 Query: 179 ATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGR 237 AT+IPPHN+ E+ + + +D+ ++ ++E + GPDFPT A II+ + I + Y GR Sbjct: 181 ATDIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGR 240 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 G + +RA + E II+ +P+Q + +++I +IAE + K++ + +RDE+D Sbjct: 241 GSIKMRATWKKEDGE------IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEAD 294 Query: 298 KDG-MRIVIEVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAF 354 + +RIV+ + + + ++ +L++ T L+ S+ +NM + +P + L +I+ + Sbjct: 295 HENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEW 354 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 + RR VTRR + L K R HILE L +A NID +IE+IRH P K L+A Sbjct: 355 LDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR- 410 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 + L+++QA AIL+LRL+ L LE +L Sbjct: 411 ---------------------------------FNLSDEQADAILNLRLRHLAKLEENQL 437 Query: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLED 532 E EL + L ILGS RL +I++E++ +++ + R +++ I+ D Sbjct: 438 KAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVEREEAKMISESD 497 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 + E V V LS G+V+ + + + K D ++ ++ Sbjct: 498 MTPAEPVTVILSEMGWVRCAKGHDID--------PKSLSYKAGDSYLAHACGKSNQAVVF 549 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 S GR Y++ LP A ++G P+ L L I ++ +E +E + MA+ Sbjct: 550 IDSTGRSYALDPLSLPSAR--SQGEPLTGKLNLPTGATIEYVVMASEQQE---LLMASDA 604 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVD-LTSGEDEVMLFSAEGKVVRFKESSV 711 G + AGK I L + +++ L + V+ ++ G+++ F + Sbjct: 605 GYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDL 664 Query: 712 RAMGCNTTGVRGIRL-----GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY--PTK 764 + G + I + + ++++ ++ D A L + Sbjct: 665 PVLS-KGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRKIVLKPEDLQKFRA 723 Query: 765 SRATKG 770 R KG Sbjct: 724 ERGRKG 729 >UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=Prochlorococcus marinus RepID=A2BND1_PROMS Length = 813 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 273/832 (32%), Positives = 450/832 (54%), Gaps = 64/832 (7%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + T ++++EE++ SYL+YAMSVIVGRALPD RDGLKPV RR+++AM LG +K ++K Sbjct: 4 KNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPFRK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 ARVVGDV+GKYHPHGD AVYD +V++ Q FS +Y +DG GNFGSID D AAMRYTE Sbjct: 64 CARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRYTET 123 Query: 126 RLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLA IAH+ + ++ ETV+F +N+DG++K PDV+P ++P LL+NGS+GIAVGMATNIPP Sbjct: 124 RLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNIPP 183 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+++G + + ++DIS + L I GPDFPT + R IEE Y+TG+G + IR Sbjct: 184 HNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRAIEELYQTGKGSITIRG 243 Query: 245 RAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 E K + II+ E+PYQ+NKA IEK+AELV ++ GIS +RDESD+DG Sbjct: 244 VINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDRDG 303 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+K+D+ E+V++NLY +T LQ +FG +AL G+P +NLK + F+ R E Sbjct: 304 MRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKKYLNYFLEFREE 363 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + +RT + L+ D+ I E L+ A +I +I +I + +A++ LV Sbjct: 364 TIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEK------- 416 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ++L+E+QA ++LD+ L+KLT LE ++ +E K Sbjct: 417 ---------------------------FFLSEKQANSVLDMPLKKLTNLEKNQIDNEIKN 449 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT------ANSADIN---LE 531 L ++ ++L + L++++ EEL ++++++ R+T+I +N LE Sbjct: 450 LAEKKNYFQKLLNERELLLKLLIEELLILKKKYNVIRKTKIIKNLNQNEELETLNNQILE 509 Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLV-ANTHDHI 590 D I + + + ++ Y+K LS Y+ G +I + I + + + + Sbjct: 510 DFI-NKKTKLYIDNRLYLKRMILSNYKKSFEGVN-----KIIDNKNIQKFICNIEKNTKL 563 Query: 591 LCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 650 + ++ GRV+++ + L + E I + + E + + Sbjct: 564 IGITNTGRVFNI---DWESSINKDYKLDNKILGNIHPSE-IINFHSIKK-ETRNYLCILN 618 Query: 651 ANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS 710 ++G KK + + KL + + + +++ +++ ++ G++ +F S+ Sbjct: 619 SDGRFKKVLFDKDMIKSNRSFTITKLKNNLKTVDSFISNESKNLIILTSIGRIFKFNLSN 678 Query: 711 --VRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 768 + A + G+ +L +K+VS I ++ G E + + Sbjct: 679 KFLTATSKQSKGLIIAKLLPTEKIVSCCTFHDGENIFLISKQGKIFCINSNEIYCSNEYS 738 Query: 769 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQ 820 G ++ K +N + + + + T+ R +++I+ + Sbjct: 739 LGYLNEKTQLKNDYFLKIMA--SNHYLDIETNKNKSARLDLNKINFKSNKSN 788 >UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaproteobacteria RepID=PARC_NEIGO Length = 768 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 257/788 (32%), Positives = 389/788 (49%), Gaps = 92/788 (11%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 + +YL+YAMSV+ GRALP+V DG KPV RR+L+AM +G KSARVVG+++GKY Sbjct: 22 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAD 137 HPHGDS+ Y+ +VRMAQ F+LRY L+DG GNFGS DGD AAAMRYTE RL IA L+++ Sbjct: 82 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141 Query: 138 LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAY 197 + + TVDF+ NYDG P +P ++P +L+NG+SGIAVGMAT IP HNL EV +A Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201 Query: 198 IDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 + + LM++IP PDF II + Y TG+G V +RAR E+E G+ Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIE-KLARGQ 260 Query: 257 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEG------------------ISALRDESD- 297 +IV E+P N A+++ +I E K G I +RDESD Sbjct: 261 WRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDG 320 Query: 298 KDGMRIVIEVKRDA-VGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFV 355 + +R+V E K + +N L +QT L+ + +N+V + +P NLK I+ ++ Sbjct: 321 EHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWL 380 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW 415 R VTRR F L + R HILE +ID +I++IR + P K L+A Sbjct: 381 DFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDP---KADLMA--- 434 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 ++ LTE QA+ IL++RL++L LE KL Sbjct: 435 -------------------------------VFGLTEIQAEDILEIRLRQLARLEGFKLE 463 Query: 476 DEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLIT 535 E EL ++ L LG + ++I +E++ +QFGD RRT + + L Sbjct: 464 KELNELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAA 522 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLL---VANTHDHILC 592 E + + LS +G+++ + + S KE D + + L T H Sbjct: 523 DEPITLILSEKGWIRSRAGHNLDL--------SQTAFKEGDRLKQTLEGPHCFTRRHPRF 574 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 RGR YS+ ++P RG G P+ +L+ L+ + A+L ++++ Sbjct: 575 I--RGRTYSIDAAEIP-GGRGD-GVPVSSLIELQNGAKPVAMLT---GLPEQHYLLSSSG 627 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELI------GVDLTSGEDEVMLFSAEGKVVRF 706 G L + AGKV + G+ ++ + + +++ +++ + + F Sbjct: 628 GYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAF 687 Query: 707 KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGK----RTAVAEYP 762 ++ M G++ I L G+ + V + IL ++ G R VA Sbjct: 688 PIGELKIMA-KGKGLQIIGLNAGESMTHTAV-SSEPEILIESEGRRGAAHKDRLPVALIE 745 Query: 763 TKSRATKG 770 K R KG Sbjct: 746 AK-RGKKG 752 Score = 43.0 bits (100), Expect = 0.052, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 9/161 (5%) Query: 701 GKVVRFKESSVRAMGCNTTGV---RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTA 757 G+ + + G GV I L G K V+++ + L ++ GYG Sbjct: 577 GRTYSIDAAEIP--GGRGDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAK 634 Query: 758 VAEYPTKSRATKGVISIKVTE---RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 + + + +A K V++ E V + ++ +I+ T + + E+ I Sbjct: 635 LGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKI 694 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 + + +G+ +I E++ +EP + + G+A Sbjct: 695 MAK-GKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAA 734 >UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinomycetales RepID=C6WIH8_ACTMD Length = 1143 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 270/776 (34%), Positives = 390/776 (50%), Gaps = 72/776 (9%) Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VV + +GKYHPHGD+A+YD +VR+AQ FSL L+DG GNFGS D D AA RYTE R++ Sbjct: 401 VVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPD-DGPAASRYTEARMS 459 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 A L+ +L+++TV+F NYDG+ P V+P PNLLVNG+SGIAVGMATN+ PHNL Sbjct: 460 GAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNLG 519 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV 248 EV+ + D +E LME IPGPD PT ++ G + +AY TGRG V +RA Sbjct: 520 EVVAAARHLVKHPDADLEKLMEFIPGPDLPTGGMLLGLDEVRKAYETGRGVVRMRATVTT 579 Query: 249 E-VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKE-KRVEGISALRDESDK-DGMRIVI 305 ++ GR+ I V E+PY V ++IEKI + V + KR+ GI+ ++D +D+ +G+R+VI Sbjct: 580 GPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRLVI 639 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E K + +L +LY T L+ SFGIN + L GQP+ + LK ++ F+ HR EVVTRR Sbjct: 640 ECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKALLEVFLAHRYEVVTRR 699 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T F RK DR H+++ L AL +ID +I+LIR + AK LV+ Sbjct: 700 TRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVST------------ 747 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E QA ILD L++LT + +L E + L +I Sbjct: 748 ----------------------FALSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEI 785 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED-------LITQED 538 AEL IL L V+ EL V + +RRT + L + + Sbjct: 786 AELSTILDDDKVLRRVVSNELGKVAKDLSAERRTTLLDGDLKEVLAASRTSGPLEVADDP 845 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V LS G V EA +G+ + + D + + +L +SRGR Sbjct: 846 CQVVLSATGLVARTAAESEEA----VEGRKRSGRAKHDAVAATVHTTARGQVLLVTSRGR 901 Query: 599 VYSMKVYQLPEATRG------ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 + V LP +G + G P+ L+ LE ER+ I P+ E + + + T Sbjct: 902 AFKTDVLPLPVLPQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGE-TDSPGLALGTKQ 960 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVD-LTSGEDEVMLFSAEGKVVRFKESSV 711 G VK V +R+ I L GDE++G L G++ ++ S+E ++R+ S V Sbjct: 961 GVVK--VCAPEWPVRSDEFEVIGLKAGDEVVGAQWLADGQEALVFVSSEASLLRYAASLV 1018 Query: 712 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA-----ILTATQNGYGKRTAVAEYPTKSR 766 R G G+ GI L VV R D A ++ + K T YP K R Sbjct: 1019 RPQGLRGGGMAGITLPGEASVVFFGAVRTDDAEHGEPVVVTSTGQSVKVTPFDLYPAKGR 1078 Query: 767 ATKGVISIKVTE-RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQG 821 AT GV + + + +GLV+ V +T++G V + R+ G Sbjct: 1079 ATGGVRAHRFLKGEDGLVLAWVGARPA----AVTESGAAVELPEIDPR---RDGSG 1127 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 35/73 (47%), Positives = 47/73 (64%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 ++ ++ E++ SYL+YA SVI RALPD RDGLKPVHRR+L++MN + Sbjct: 16 FDSAGAKVIDNSLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPT 75 Query: 61 KAYKKSARVVGDV 73 Y KS+RVVGD Sbjct: 76 SPYVKSSRVVGDC 88 >UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VBP9_9CLOT Length = 759 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 235/793 (29%), Positives = 398/793 (50%), Gaps = 61/793 (7%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 ++ +I V+ E E+ SY+DY+MSVI RALPDVRDGLKPV RR+LY++N L +K + Sbjct: 1 MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLA-GSDKPH 59 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +K AR+VGD +GKYHPHGDS++Y+ +V MAQ + L LVD GNFGS+DG AAAMRYT Sbjct: 60 RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRYT 119 Query: 124 EIRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 E R++K ++ M DL F+ N+DGTE P +P ++PN+LV+GS+GIAVGMATNI Sbjct: 120 EARISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGKVY 241 P HNL EVI+ + Y++D ++ +E L++ + GPDF T IIN + + + Y TG G++ Sbjct: 180 PTHNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIK 239 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDKD 299 +R + E+ D GR++I V EIP+ + A+ ++ +AEL + + + + + D DK+ Sbjct: 240 VRGKVEIR-DIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKN 298 Query: 300 GMRIVIEVKRDAVGE---VVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 G + I+VK+ E ++N LY + L+ +FG+N+ ++ G+P++M L+ I++ + Sbjct: 299 GECLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYDGKPEVMGLRRILSIYTD 358 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 + + + L + I L A+ ID IIE++R + A+AK L+ Sbjct: 359 FKYGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMH---- 414 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 G+ + + R A ++L TE+QA AIL +RLQKL GLE L Sbjct: 415 -GDTSNITFRFKGSEADAKFL-----------CFTEKQADAILAMRLQKLIGLEVNALKK 462 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 E ++ I + ++L S + + + ++ ++E++ R+T I + + + Sbjct: 463 ELEDAEKLIKKYSKLLESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAVE 522 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 +V V L Y+K + Y+ + ++D+ + + F+ Sbjct: 523 TEVAVLLDRFYYIKVVDANLYDKNKAQI---------DKDY-RFSFKCKNTERVGVFADN 572 Query: 597 GRVYSMKVYQL-----------------PEATRGARGRPIVNLLPLEQDERITAILPVTE 639 ++Y +KV + +G I + +E I + + + Sbjct: 573 NQMYMIKVADIIKLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQ 632 Query: 640 FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSA 699 + + T +G K ++ LR +A + D +I + ED +++ S Sbjct: 633 IID-KNLLFVTKHGQAKLVPGNNYDVLRK--MIAASKQEED-IIFIHDAEMEDFIVVKSM 688 Query: 700 EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 759 G R + S + G +R + + + D++ + V + Sbjct: 689 LGYYARIQISEIPVKGKGAGCIRLVNITDDDEIEEVAVGSTKDSFFVDNTE-----ILFT 743 Query: 760 EYPTKSRATKGVI 772 R +KG Sbjct: 744 RIKACKRGSKGTK 756 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 73/214 (34%), Gaps = 36/214 (16%) Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 + +K +++ + +D D + V +F+ ++ Sbjct: 527 VLLDRFYYIKVVDANLYDKNKAQ-------IDKDYRFSFK-CKNTERVGVFADNNQMYMI 578 Query: 707 KESSV------RAMGCNTTGV--------RGIRLGE------GDKVVSLIVPRG--DGAI 744 K + + + G G +GI++ E + ++ + D + Sbjct: 579 KVADIIKLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQIIDKNL 638 Query: 745 LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 804 L T++G K Y + I +++ ++ + D I++ + G Sbjct: 639 LFVTKHGQAKLVPGNNYDVLRK------MIAASKQEEDIIFIHDAEMEDFIVVKSMLGYY 692 Query: 805 VRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 R ++SEI + G+ + L+ +D+ + + Sbjct: 693 ARIQISEIPVKGKGAGCIRLVNITDDDEIEEVAV 726 >UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNU6_9RICK Length = 746 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 261/793 (32%), Positives = 420/793 (52%), Gaps = 81/793 (10%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +++ I ++ + YL YA+S I RALPDVRDGLKPVHRR++YAM +L + Sbjct: 1 MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSARVVGDVIGK+HPHGD +VYD +VR+AQ FS Y LV+GQGNFG++DGD+AAAMRYT Sbjct: 61 KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E +L K + L+AD+E+ETV+F YDG P+++P++ PN+L NGSSGIAVGMAT+IP Sbjct: 121 ETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGKVYI 242 PHN+ E+ + D+ + SI+ L++ I GPDFPT I+N ++ I +AY+TGRG I Sbjct: 181 PHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEI 240 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 +++ +VE D G I V EIPY VNK++LIEK+A ++ K+ + + + DESD+ +R Sbjct: 241 KSKYKVE-DLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEK-IR 298 Query: 303 IVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLKDIIAAFVRHRRE 360 IV+ K R+ E ++N+L+ Q++L+ +NM L+ +PK+MNLK+I+ + ++HR Sbjct: 299 IVLRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYI 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ + F+L+K + R IL+ + N++ II++IR++ P K L+ Sbjct: 359 ILNNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDP---KKELIKK------- 408 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y T Q +IL++RL+ L +E + E+K Sbjct: 409 ---------------------------YKFTLIQVDSILEMRLRNLKKIEELDIKKEFKN 441 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGD-----KRRTEITANSADINLE---D 532 L + L +IL S + I E V +FGD RR+ + + E Sbjct: 442 LELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDNSTYGPRRSILEKFVKFTDDELESK 501 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 L E++ V+L ++ ++K KG K D + ++ T D I Sbjct: 502 LEVIENINVSLINEKFLK------------SKKGTYKRSEKNSDDVSLIINCKTSDQICL 549 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 S+ G+ Y + L + +G I + L L+ +E+I + E +E + +++ N Sbjct: 550 LSNIGKSYILNCSNLKFGS--TKGFLISSYLKLKDEEKIVDLFVYKEKQE---IILSSQN 604 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE--VMLFSAEG---KVVRFK 707 G + + +GK + D+ G L + E + ++LF + K++ F+ Sbjct: 605 GYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNLKYKLIIFE 664 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYP--TKS 765 V + +GV + +G K+ + + +++ K+ + Sbjct: 665 LKEVPYL-QKGSGVILFK-TKGFKLNNFCSIDDNLSLIDIDS----KKIELGNLKSFLSK 718 Query: 766 RATKGVISIKVTE 778 R G IK+ + Sbjct: 719 RGKSG-KVIKLKK 730 >UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammaproteobacteria RepID=A5EV71_DICNV Length = 739 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 239/774 (30%), Positives = 383/774 (49%), Gaps = 72/774 (9%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ + +YLDYAM VI+ RALP + DGLKPV RR++YAM+ LG YKKSAR VG Sbjct: 8 SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRLAKI 130 DV+GKYHPHGDSA Y+ +V MAQ FS RY L+DGQGN+GS D S AAMRYTE +L Sbjct: 68 DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESKLTAY 127 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 AH L+A+L ETVD+ N+DGT + P +P ++PN+L+NG SGIAVGM+T+IPPHN+ E+ Sbjct: 128 AHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGEI 187 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVE 249 + C A + + +S E L++ +P PDFPT + IN R I YRTG G V +RA +E Sbjct: 188 VAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHIE 247 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIEVK 308 ++ I++ E+PYQV+ +++ E+I + ++EK++ + A+RDESD K+ R+V+ + Sbjct: 248 ------KDNIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPR 301 Query: 309 RDAVGEV-VLNNLYSQTQLQVS--FGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 + + ++ +L++ T L+ + +NM+ L G+P+I L I+ ++ +R + V RR Sbjct: 302 SHRIDKKRLMQHLFATTDLEKTVRIQLNMIGL-DGKPQIKPLIVILREWLTYREQTVMRR 360 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + L +R IL L +A +D +I++IR A+TAL+ Sbjct: 361 LSYRLHALNERLEILAGLRIAFLQLDTVIQIIREHDD---AQTALM-------------- 403 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 LT Q++AIL++RL++L LE ++ E K L+D+ Sbjct: 404 --------------------QALPLTAAQSEAILNIRLRQLAKLEENAIVQEEKTLIDEQ 443 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI--TQEDVVVTL 543 L ++ + D ++ I +EL + + D RRT A L E V + L Sbjct: 444 KSLQNLIDNRDARLQFIADELAADAQNYADPRRTTFIKPDAKTALPARAWQPSEAVTLVL 503 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S +V+ + + K D + A + + + GR Y++ Sbjct: 504 SKMAWVRLAKTHQVDG--------RTLAYKSGDEFLLQIAAKSDQTAILCGNDGRYYALS 555 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 + + A G P+ + I A + + +A N ++ Sbjct: 556 LANIASAR--GYGEPLSRYFSFAEKTTIVAAAAL---DPEQYYVLAANNAYGFVVKGSDL 610 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 GK + + + L + L E + G+ + F + G + Sbjct: 611 VAKTKKGKAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFPARDLPQQS-KGKGNKI 669 Query: 724 IRLGEGDKVVS------LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 + + + + + LI+P +LT+ + +R KGV Sbjct: 670 MAITQKEWIQGVRLKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCGARGQKGV 723 >UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria RepID=A0Q573_FRATN Length = 742 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 250/771 (32%), Positives = 406/771 (52%), Gaps = 67/771 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + + ++ E + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ +G Sbjct: 1 MDLFSSLESTRSVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHL 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAA 119 YKKSAR VGDV+GKYHPHGDSA Y+ +V MAQ FS RY +DGQGN+GSID S AA Sbjct: 61 SKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAA 120 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 MRYTE RL+K A L+ +L+K TVD+ N+DGT P ++P ++PN+L+NG+ GIAVGM+ Sbjct: 121 MRYTESRLSKYAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMS 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRG 238 T IPPHN+TE+IN CL + + +IE ++E + PD+P A II+ + I + Y++G G Sbjct: 181 TYIPPHNITEIINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNG 240 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-D 297 + +A E + +++ ++P+QV+ A ++E+IA +K++++ I ++DES D Sbjct: 241 SIRQQAVYEYD-----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDD 295 Query: 298 KDGMRIVI-EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFV 355 K+ ++IV+ + ++ +L + T L+ SF +NM + +P++ NL DI+ ++ Sbjct: 296 KEPVKIVLYSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWL 355 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW 415 +R+ + RR L K DR HILE L +A NID +I++IR+ P+ Sbjct: 356 EYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPS----------- 404 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 G + L+E QA+AIL++RL+KL +E ++ Sbjct: 405 --------------------------GELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIK 438 Query: 476 DEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DL 533 E KEL + L L S + ++++E + + FGD RR++I LE DL Sbjct: 439 KEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDL 498 Query: 534 ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF 593 + E V + LS G+++ + + K ED + N++ ++ F Sbjct: 499 MPSEKVTIILSKAGWIRCAKGENID--------PAGLSYKPEDKPFLVTTGNSNIKLVFF 550 Query: 594 SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 653 S G+ YSM V +LP A G I +PL++ ++I +I V +A+ +G Sbjct: 551 SKLGKAYSMYVDKLPSAR--GYGEHITTYIPLDKQDQIISIAFVNA---AGYFLIASESG 605 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA 713 + + GK + D D++ + +++ S++G+V+ +S Sbjct: 606 KAFVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFAL 662 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTK 764 + G IRL + DK+ + + R + LT R T Sbjct: 663 L-KKGKGKSIIRLDKKDKLKFIELFRANQE-LTLNAGKRFIRIDSKNIETY 711 Score = 46.4 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 71/214 (33%), Gaps = 22/214 (10%) Query: 629 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLT 688 E+ A+ + + G ++ + + D+ V Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDP------AGLSYKPEDKPFLVTTG 541 Query: 689 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG-----VRGIRLGEGDKVVSLIVPRGDGA 743 + +++ FS GK + + G I L + D+++S+ G Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLP----SARGYGEHITTYIPLDKQDQIISIAFVNAAGY 597 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 803 L A+++G + T K + V + D +++ I+ G Sbjct: 598 FLIASESGKAFVIPAEDLITNKITGKNIFD------ADDVFKFMPFDQDHKMLAISSQGR 651 Query: 804 LVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 ++ + +++ + +G +IR + + + ++ Sbjct: 652 VIIRDFASFALL-KKGKGKSIIRLDKKDKLKFIE 684 >UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H694_9FIRM Length = 749 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 220/741 (29%), Positives = 352/741 (47%), Gaps = 61/741 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + I L+++Y+ YAMSVIV RALP++ DG KP HR++LY M +G A KSA Sbjct: 29 VLEDPITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGL-LKGARTKSA 86 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQ-PFSLRYMLVDGQGNFGSIDGDS--AAAMRYTE 124 +VG + +PHGD+A+YDT+VRM + SL VD +GNFG AA RYTE Sbjct: 87 NIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTE 145 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +L + EL D++KETVDFV NYDGT P ++P P +L N + GIAVGMA NI Sbjct: 146 AKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNICS 205 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIR 243 NL E+ +A + D I M P PDF I+ + E Y GRG + +R Sbjct: 206 FNLAELCATTVALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRGSIKVR 262 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 AR V G + + +IP +++KIAELVK +++ IS +RDE+D +G+++ Sbjct: 263 ARYNV----VPGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLKL 318 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 +++KR E ++ LY T L+ SF N L GQP++M +++I+ + R E V Sbjct: 319 TLDLKRGVDPEKLMAKLYKTTPLEDSFSCNFNVLVSGQPRVMGVREILQEWTAFRMECVR 378 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT ++L R H+L+ LA L +ID I +IR E L+ Sbjct: 379 RRTYYDLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLM------------ 426 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + + E QA + +++L+ L K E ++L Sbjct: 427 ----------------------IGFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEK 464 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN---SADINLEDLITQEDVV 540 IA+L IL R+ +I EL V +++ RR+EI + E++I V Sbjct: 465 DIADLNDILAKPARIRRIIINELNDVAKKYAQPRRSEILYDLPEEESGAEEEVIPDYPVT 524 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V + +GY+K P A ++KE D I + + L F+ + +VY Sbjct: 525 VFFTREGYLKKIPPQSLRTAG-------AHKLKEGDEIIHQVETRNNVEALFFTDKQQVY 577 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +++ +L + G + L +++ E I A++ ++ V F A G K L Sbjct: 578 KVRLNELEDGKVAQMGIYLPGRLGMDEGENILAMVITGDYSGYVLFFFA--GGKCAKIPL 635 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCNTT 719 + + K+ D + L + + E+ + ++ G+++ + + A ++ Sbjct: 636 ASYATKQNRRKLLKAYSDKEPLAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTTRDSQ 695 Query: 720 GVRGIRLGEGDKVVSLIVPRG 740 GV + L + + S++ Sbjct: 696 GVAVVTLKKNQTIASVVPAET 716 Score = 70.3 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 17/197 (8%) Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 T G +KK LRTAG A KL +GDE+I T E + F+ + +V + Sbjct: 525 VFFTREGYLKKIPP---QSLRTAG--AHKLKEGDEIIHQVETRNNVEALFFTDKQQVYKV 579 Query: 707 KESS-----VRAMGCNTTGVRGIRLGEGDKVVSLIVPRG-DGAILTATQNGYGKRTAVAE 760 + + V MG G G+ EG+ ++++++ G +L G + +A Sbjct: 580 RLNELEDGKVAQMGIYLPGRLGM--DEGENILAMVITGDYSGYVLFFFAGGKCAKIPLAS 637 Query: 761 YPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS-IVGRNT 819 Y TK K + + E + + + + ++ + T AG ++ ++I+ R++ Sbjct: 638 YATKQNRRKLLKAYSDKE---PLAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTTRDS 694 Query: 820 QGVILIRTAEDENVVGL 836 QGV ++ +++ + + Sbjct: 695 QGVAVVTLKKNQTIASV 711 >UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial, putative n=5 Tax=Magnoliophyta RepID=B9SK06_RICCO Length = 540 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 222/395 (56%), Positives = 292/395 (73%), Gaps = 3/395 (0%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + + +E +Y+ YAMSV++GRALPDVRDGLKPVHRR+L+AM+ LG K +KK Sbjct: 108 RVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 167 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVG+V+GK+HPHGDSAVYD +VRMAQ FSLR L+ G GNFGSID D AAMRYTE R Sbjct: 168 ARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPPAAMRYTECR 227 Query: 127 LAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 L + L+ADLE +TVDFV N+D ++K P ++P ++P LL+NGSSGIAVGMATNIPPH Sbjct: 228 LEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPH 287 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+++ A I + + +++ L+E++PGPDFPT +I G GI EAYRTGRG++ +R + Sbjct: 288 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGRGRIIVRGK 347 Query: 246 AEVE-VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 EVE +D+KT R +I+ EIPYQ NKA L+EKIAELV+ K ++G+S +RDESD+ GMRIV Sbjct: 348 TEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDESDRSGMRIV 407 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IEVKR + +VLNNLY T LQ SF NMV + GQPK M LKD++ A R VV R Sbjct: 408 IEVKRGSDPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKDLLQASY-FRCSVVER 466 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRH 399 R F+L +A++R HI+E + + L N+D +I +I+ Sbjct: 467 RARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKE 501 >UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clostridiaceae RepID=A6TSS8_ALKMQ Length = 930 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 231/864 (26%), Positives = 420/864 (48%), Gaps = 88/864 (10%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M EI IE+ L+S+Y+ YAMSVIV RALP++ DG KP HR++LY M+ +G Sbjct: 1 MDKSINEIEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGL-LT 58 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFS-LRYMLVDGQGNFGSIDGDSA-- 117 K KSA +VG + K +PHGD A+Y+T+V+M + L + VD +GNFG + Sbjct: 59 KGRSKSANIVGTTM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMRE 117 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RYTE +L K E+ ++++K VDFVDNYD T K P ++PT PN+LV + GIAVG Sbjct: 118 ASARYTEAKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVG 177 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTG 236 MA +IP NL EV +AY+ D++I L+E++ PDF T +I +++ Y TG Sbjct: 178 MAEHIPSFNLKEVCEATIAYLKDKEI---DLLEYLKAPDFSTGGELIFNEVTMKQVYHTG 234 Query: 237 RGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 RG +R + I ++EIPY + +IE I ELVK+ +++ I+ +RDE+ Sbjct: 235 RGTFKVRGKYRY----VKADNAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDET 290 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 DK+G++I I++KR + ++ + T+L+ SFG N L +G PK+M +K+I+ ++ Sbjct: 291 DKNGLKITIDLKRGVNPDDLMVKFFKWTKLEDSFGCNFNILINGHPKVMGVKEILDHWIA 350 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R + R+ FE+ K ++ ++L+ L NI ++++I++ + L+ Sbjct: 351 FRLSCLKRQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQ--- 407 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 + L QA+ I +++L+ L K + Sbjct: 408 -------------------------------FDLNLAQAEYIAEIKLRSLNQELILKKIK 436 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLI 534 E + ++ L +L + E+I +L+ + E +G R+T+I ++ E LI Sbjct: 437 EISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYGIPRKTDIINENEVEVLSEEILI 496 Query: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594 ++ + L+++GY+K L+ + ++K+ D+I + + +L FS Sbjct: 497 ENYNMKLFLTNEGYIKKISLASLRSSGDH-------KLKDNDYIVQEIDGTNRGEVLLFS 549 Query: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654 ++ VY +K Y+L ++ G+ + N+L L DE I I+ +++ + F NG Sbjct: 550 NKETVYKIKAYELEDSKASNLGQYLNNVLGLSSDEIILHIVCTEDYQGHMLFFF--ENGK 607 Query: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 K +T + ++A L+ + + E+M S K + F + + Sbjct: 608 GAKIPITSYETKTNRKQLANAYSGDSPLVYISSIEEDLEMMATSNLNKTLIFNTEEMSPI 667 Query: 715 -GCNTTGV------RGIRLGE--------GDKVVSLIVPRGDGAI-LTATQNGYGKRTAV 758 N+ GV +GI L + D++++ V + + T+ GY K+ + Sbjct: 668 NSRNSKGVQVFKCKKGISLKKIKPMDEVSPDEMLNQKVLDENPRVKFFLTKGGYIKKIPL 727 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGR- 817 + +++ ++ V+ + ++++ ++ L +T+ E+ Sbjct: 728 TTLVEDEE--------QRLKKDDYIIQEVEGAEEGELLLFSNKQILYKTKARELEEDEDK 779 Query: 818 -NTQGVI---LIRTAEDENVVGLQ 837 + G ++ DE+++ + Sbjct: 780 VASIGQRIRSILALDADEDIIYIT 803 >UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms RepID=C0QRN3_PERMH Length = 1217 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 236/736 (32%), Positives = 384/736 (52%), Gaps = 64/736 (8%) Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL K+A E++AD++K TVD +N+D + P+V+P K PNL+ NG+SGIAVG++TNI Sbjct: 534 TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVY 241 PPHN +EV + + ++E L + I GPDFPT I I I + Y GRG V Sbjct: 594 PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 ++ +A +E R II++EIPYQVNK LI++IAELV++ + +GIS LRDESD+DG+ Sbjct: 654 VKGKARIE-RLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGI 712 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RIV+E+KR+A E VL LY +TQLQ S IN+ L QPK ++LK ++ F++HR +V Sbjct: 713 RIVVELKREADPEKVLKKLYRRTQLQKSIPINLTVLVGKQPKTVDLKGLLQEFIKHRVDV 772 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 +TRRT+F+L KA +R HI+E L AL N D +I+++R + + A++ LV Sbjct: 773 ITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEE-------- 824 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + L++ QAQAILD+RL + T LE +KL E +L Sbjct: 825 --------------------------FELSDTQAQAILDMRLSRFTALEGDKLYQEADDL 858 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 +I E RIL S + + V EE++ + E+FGD+R+T I L +E ++ Sbjct: 859 RLKIEEYQRILSSEEEKIRVFIEEIDELLEKFGDERKTVIVEEKE----AGLTFEEHYIL 914 Query: 542 TLSHQGYV---KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + G + + ++ + + + + +K + + + + I + +G+ Sbjct: 915 AVLSSGRILNRRIDDDADKKDIFQKVMNEVVSSVKPGEKLISVQEVESSIPIAFITDKGK 974 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 Y V LP +G + +++ E I E EE +F+ T NG +K+ Sbjct: 975 AYWSLVADLP------KGE---GRINIDEGE-IVGTAFKGEGEEDR-LFILTKNGIIKRM 1023 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 + ++ I L + D ++ + +++ +G ++ F+ + VR G Sbjct: 1024 SYEDIF-YKSQNHSIIPLAEDDCVVTAFADDHPSLIGVYTRKGDLLLFERNQVRVTGDKA 1082 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY-----PTKSRATKGVIS 773 GV I L EGD V + + I+T T+NGY K E+ K RA KG+++ Sbjct: 1083 KGVEAIDLDEGDTVAGGFLINSEDLIMTVTKNGYTKLVRKEEFFTKEGKVKKRAQKGLMA 1142 Query: 774 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE--ISIVGRNTQGVILIRTAEDE 831 +K+ ++ + AV V+ + + T+ G +++ V + I + R G +++ E + Sbjct: 1143 VKLG-KDDFLSVAVPVELDETVYFSTEKGRVLKLIVDQKRIPVAKRTAMGDPVLKI-EGD 1200 Query: 832 NVVGLQRVAEPVDEED 847 VV + +E D Sbjct: 1201 YVVRAVKPKIKSEEND 1216 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 89/117 (76%), Positives = 100/117 (85%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 EI IEEE+KS+YLDYAMSVIVGRA+PDVRDGLKPV RR+LYAMN LG NK YKK Sbjct: 2 SEIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKK 61 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 SARVVG+V+GKYHPHGD++VYD +VRMAQ F+LRY L+ GQGNFGSIDGD AAMRY Sbjct: 62 SARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRY 118 >UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular organisms RepID=A7AVY4_BABBO Length = 1051 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 247/983 (25%), Positives = 414/983 (42%), Gaps = 201/983 (20%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 +L + + + +EL S++ YA+S+I+GRALPD RDGLK VHRR+L+AM V+ + Sbjct: 93 ELLHTVQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTP 152 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Y+K A+VVGDV+GKYHPH D +VYD + R++Q F +R LVDG GNFGS D D AAMRY Sbjct: 153 YRKCAKVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRY 211 Query: 123 TEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 TE RL+ + + L+A++ K TVD + N+D TE P V+P+K+P LL+NGSSGIAVG+ATN Sbjct: 212 TECRLSPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATN 271 Query: 182 IPPHNLTEVINGCLAYIDDE-DISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGK 239 IPPHN E++ + ++ E L+ + GPDFPT I+ + + Y TG+G Sbjct: 272 IPPHNPEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGS 331 Query: 240 VYIRARAEVEVDAK-------------------------TGRETIIVHEIPYQVNKARLI 274 + ++A+ E K R +IIV E+PY V + ++ Sbjct: 332 IMLQAKYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVM 391 Query: 275 EKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG----EVVLNNLYSQTQLQVSF 330 I++ V+ + GIS LRDESD+ G+R+VIE+K+ E ++ L + L F Sbjct: 392 LAISKAVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFF 451 Query: 331 GINMVALH--HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA 388 N +AL +P ++L + ++ R + V +R + +A++R +I++ A+A Sbjct: 452 KCNFIALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFN 511 Query: 389 NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLY 448 ID I+ ++R++ + AEA L + Sbjct: 512 KIDDIVHMVRNSSSSAEAMRMLSEKRYG-------------------------------- 539 Query: 449 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 508 L +QA A+L + L +L+ +E +K+ E KEL + I ILG + +I ELE Sbjct: 540 GLNAEQASAVLRMSLSQLSRIERDKIDLEEKELSESIKRYNHILGDESHIYSLIYSELEH 599 Query: 509 VR----EQFGDKRR-----------------------------TEITANSADINLEDLIT 535 +R + + + R E + + ED I Sbjct: 600 IRQNPEKHYTVRHRCTTLSVSGHTSLGDGDVAQDYPPELGGNDEEFVDSISATIAEDHIA 659 Query: 536 -----------------------QEDVVVTLSHQGYVKYQPLSE--YEAQRR-------- 562 E ++ +++ G ++ L + +Q+ Sbjct: 660 NEPGNDPGDLVKQNPDLEGHNPHDEPSLIVMNNYGLMQRIKLDNSFFRSQKSRYIPSSRL 719 Query: 563 ------------GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 G A I + + V D + S G + + V L Sbjct: 720 QQPYQGQYSIGEGENEDVAPEITQSELQLHYGVCRPGDSCMMISKDGTCFVLPVSALRLC 779 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEF--------------------EEGVKVFMAT 650 +G I + L+ E + ++ E + + Sbjct: 780 ---NKGYSIWKQVKLKSPENVEYFTVTSKLLFSQDQNSGVSNCMYKLIMDETTSYLVLIF 836 Query: 651 ANGTVKKTVLTEFNR--LRTAGKVAIKLVDGDEL--IGVDLTSGEDEVMLFSAEGKVVRF 706 +G V F L + ++L + EL I +D++ + + G +R Sbjct: 837 TDGQVGIISTKHFPSGHLYKNPLIRLRLWNNKELKPIFAMFCCPDDDIFVGTLRGYSLRV 896 Query: 707 KESSV------RAMGCNTTGVRGIRLGEGDKVVSLIVPR------------------GDG 742 + + + R + I+L E DKV + + Sbjct: 897 RLNDLLGGMEHRGKTRK----KLIKLKENDKVTCGAILESLSNVENDAKEICRFENYDNR 952 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD-CDQIMMITDA 801 +L +++G K ++E + G + + + A V D D I++++ Sbjct: 953 HLLLLSEHGRAKLLHISELQLRRHGGYGYNITRQSSSTIEGLYAATVVDTDDDILLVSKD 1012 Query: 802 GTLVRTRVSEISIVGRNTQGVIL 824 G L R + + R+ + Sbjct: 1013 GLLARKDPFTLPVASRHQKMRKF 1035 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 217/809 (26%), Positives = 391/809 (48%), Gaps = 87/809 (10%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +I + L +YL YA+ VI RA+ + DG KP HR++L+ ++ + K Sbjct: 665 DNEQEKDIVKVLNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNLYNKR--TK 721 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS--AAAMRYT 123 SA +VG + + HGD ++Y+T+VRMAQ +L Y V+G+GNFG S A MRYT Sbjct: 722 SAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYT 780 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E + I E + K VDFV N+DG ++ P ++PT PN+LVN + GIAVGMA+ P Sbjct: 781 EAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATP 840 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYI 242 NL EV + +AYI D +I + ++ PDF T I + + Y TG+G V + Sbjct: 841 SFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQIYETGQGSVTL 897 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKR---VEGISALRDESDKD 299 RA+ EV+ + IIV EIPY N+ +++ I L +E + + I+ + D +D+ Sbjct: 898 RAKYEVKDNE------IIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRK 951 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM-VALHHGQPKIMNLKDIIAAFVRHR 358 GM I I++K++ E+++ LY+ T+LQ S+ +NM + P+++++K I+ +++ R Sbjct: 952 GMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFR 1011 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 R ++R + ++ + + H+L A + L +ID ++ + R+A + L Sbjct: 1012 RMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQ------- 1064 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL-LDE 477 + + ++QA+ + +++L+KL ++ + Sbjct: 1065 ---------------------------LYFKIDQEQAEYVSNIKLKKLNKNNIIEITEQQ 1097 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDL-I 534 L +I++L I R+ +I ++L+ +R+++ R+TEI + + LED+ I Sbjct: 1098 ITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEIINVEDIPSVTLEDIKI 1157 Query: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594 + + L+ Q Y+K + + ++K++D I + N D +L F+ Sbjct: 1158 EDFNPTLVLTEQQYIKKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLLFT 1206 Query: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLL--PLEQDERITAILPVTEFEEGVKVFMATAN 652 ++G V KVY+L E G + NLL LE DE++ I ++ V N Sbjct: 1207 NKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTKNYKG--SVITVFEN 1264 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 712 G V + L ++ + +L+ + + + + ++L S EGK + S +R Sbjct: 1265 GNVARIDLKQYKTKQNRQVPMDAYNTDSKLVSISVITDDTNILLVSQEGKALIINTSQIR 1324 Query: 713 AM-GCNTTGVRGIRLG-EGDKVVSLIV-PRGDGAILTATQNGYGK-----------RTAV 758 NT GV G+++ E +KV+ I+ + T+ K + ++ Sbjct: 1325 PTKSRNTQGVAGMKIDTEHNKVIGSIIGVTVEDNFDIKTEKSKSKFIMLDDIAPNGKQSM 1384 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAV 787 EY +R T+G +++ V+ + Sbjct: 1385 TEYLKGNRNTQGNFIYNTRQKHDKVIELI 1413 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 23/224 (10%) Query: 635 LPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEV 694 + + +F + T +KK + F++ + KL D D+++ + +D++ Sbjct: 1155 IKIEDFNPT---LVLTEQQYIKKNRV--FSQSQ-------KLKDDDKILQFHQCNNKDDL 1202 Query: 695 MLFSAEGKVVRFKESSVRAMGCNTTG-----VRGIRLGEGDKVVSLIVPRG-DGAILTAT 748 +LF+ +G V+ K + +T G + G L +KV+ + + G+++T Sbjct: 1203 LLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTKNYKGSVITVF 1262 Query: 749 QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR 808 +NG R + +Y TK + + + +V + D I++++ G + Sbjct: 1263 ENGNVARIDLKQYKTKQNRQVPMDAYNTDSK---LVSISVITDDTNILLVSQEGKALIIN 1319 Query: 809 VSEI-SIVGRNTQGVILIRTA-EDENVVGLQRVAEPVDEEDLDT 850 S+I RNTQGV ++ E V+G D D+ T Sbjct: 1320 TSQIRPTKSRNTQGVAGMKIDTEHNKVIGSIIGVTVEDNFDIKT 1363 >UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976864 Length = 664 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 192/719 (26%), Positives = 339/719 (47%), Gaps = 78/719 (10%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 T NIE+ ++++ ++Y+ +++ RALPD+RDGLKPVHRR+LY+M + + KSA Sbjct: 4 TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMYLQKAF---KFTKSAN 60 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS--AAAMRYTEIR 126 V G V+ K HPHG + Y ++V M Q +++G+GNFG AA RY+E++ Sbjct: 61 VAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVK 117 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L++I+ ++M + +K VDF+DNYDGT K+P+V+P K P++L +SGI VG +++IP N Sbjct: 118 LSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFN 177 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI-EEAYRTGRGKVYIRAR 245 L E+ + YI+ + + + PDF T +I + + GRG V IR + Sbjct: 178 LKELTEAIVKYIETGE-------KTVLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGK 230 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 AE+ + I + EIPY + +IEKI EL K +++ ++ ++D + GM I I Sbjct: 231 AEI------VKNEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 +R+ V+L LY T LQ +F NM L PK++ + I ++ R + R Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTTCIKRG 344 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 ++ + H+L+ L L +ID IE+IR + Sbjct: 345 LSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSS------------------------ 380 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + + + +QA+ + +++L+ + K +++ + I Sbjct: 381 -----------QDQIEPNLQKHFGIDFEQAKEVANMKLRNINREYIIKKIEDIDKFEKTI 429 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQEDVVVTL 543 I+ S D++ ++I + L +E++G +RRT+I + L + + V + L Sbjct: 430 ENYKMIVKSQDKINQIIIKGLNETKEKYGKERRTKIVELTEVKPVRLVEEVPNYAVTIYL 489 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + +GY KG +K D + ++ IL F S + ++ Sbjct: 490 TKEGYCYK------------FKGNQEPNLKPGDEVLKVFETENKAEILIFGSDRVCHKVE 537 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT-ANGTVKKTVLTE 662 + + E A G + N++ +D+ IT I+ + + K +A +N + K L Sbjct: 538 LKDIDETRANALGTYLPNMI---RDKNIT-IVSYSILDSTHKFIIAAYSNNRIAKINLEA 593 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 F RT K + L L+ + + + L + + K+ ++ G N TGV Sbjct: 594 FQGNRTILKNSYCLKQD--LLDMITLEDDVSLNLLTDKSKLTVDTKNFNLTNGRNATGV 650 >UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=Mycobacterium RepID=A4T3N2_MYCGI Length = 716 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 187/729 (25%), Positives = 311/729 (42%), Gaps = 88/729 (12%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + + +E L +A+ + RA+P DGLKP RR+LY M+ + Sbjct: 9 PELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNKPQ 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KS+++ V G HPHG +++Y MA F R ++DGQG F I GD AA RYTE Sbjct: 69 KSSKICSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADRYTE 127 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +RL+ L A+L+ V V +DG P V+P + P LL NG+ GIA G AT +P Sbjct: 128 MRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPA 187 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HN EV+ C A + +++ + L++ IPGPD+ A + G G+ E TGRG +R Sbjct: 188 HNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLREYITTGRGLFTVRG 247 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRI 303 V + I+ E+P V + ++I LV+ + G++ + D +D ++G+RI Sbjct: 248 TVSV------DGKNCIITELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRI 301 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVV 362 V+ KR E + + L + T L+ SF ++VAL + P+ +++++IAAF+ R VV Sbjct: 302 VVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVV 361 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 R+ + L K R H++ L +ID + +IR + T +A+ L Sbjct: 362 LHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQER--------- 412 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + + QA +L L+L++LT L+ +L E ++L Sbjct: 413 -------------------------FAIDAVQADYVLALQLRRLTKLDVIELQAEAEKLD 447 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDK---RRTEITANSADINLEDLITQEDV 539 + A L ++ + D +VI +EL + F RRT + ++ V Sbjct: 448 AEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDRRTVLDYDAT-----------PV 496 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 S G + + + + RG S + T I + G Sbjct: 497 AANNSEDGPRERKVNAAWRLDDRGVFSDSHGTLLSS---GLGWAVWTDGRIKFTTGGGLP 553 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 + ++ +P + IT +L G + + T G V + Sbjct: 554 FKIR--DIPVSP------------------DITGLLQSGVLAPGSHLALITRRGRVLRID 593 Query: 660 LTEFNRLRTA--GKVAIKLVDG---DELIGVDL--TSGEDEVMLFSAEGKVVRFKESSVR 712 N A G +KLV D +I + + ++ S + V + + + Sbjct: 594 PAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSWKVT-EVADIP 652 Query: 713 AMGCNTTGV 721 G GV Sbjct: 653 VKGRGGAGV 661 Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 6/110 (5%) Query: 682 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL---GEGDKVVSLIVP 738 L+ + + + L + G+V+R ++V G GV G++L D+V++ + Sbjct: 568 LLQSGVLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPV 627 Query: 739 R--GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 AIL+ ++ + K T VA+ P K R GV + ++ A Sbjct: 628 SCANGEAILSISEKSW-KVTEVADIPVKGRGGAGVGFHPFGKGEDALLSA 676 Score = 51.1 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 6/144 (4%) Query: 737 VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKV--TERNGLVVGAVQVD-DCD 793 V + T+ G R A + A GV +K+ + V+ A+ V Sbjct: 573 VLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANG 632 Query: 794 QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDG 853 + ++ + T V++I + GR GV + E+ + ++ T+ Sbjct: 633 EAILSISEKSWKVTEVADIPVKGRGGAGVGFHPFGKGEDALLSAAISATGYVRGTRTVRA 692 Query: 854 ---SAAEGDDEIAPEVDVDDEPEE 874 + A A D P + Sbjct: 693 EKRAKASIKGSGADVTPADAAPAD 716 >UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria RepID=Q4N468_THEPA Length = 1014 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 221/907 (24%), Positives = 389/907 (42%), Gaps = 157/907 (17%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + + + + SS+L YA+S+I+GRALPD RDGLK VHRR+++AM++L D N Y+K A+VV Sbjct: 102 LKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNGQYRKCAKVV 161 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 GDV+G YHPH D +VYD + R++Q F ++ L+DG GNFGS + D AAMRYTE RL Sbjct: 162 GDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAAMRYTECRLTNF 220 Query: 131 AHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 + ++ D+ T+D++ N+D T P V+P ++PN+L+NGSSGIAVG+ATNIPPHN TE Sbjct: 221 SKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLATNIPPHNPTE 280 Query: 190 VINGCLAYIDD---------------------EDISIEGLMEHIPGPDFPTAAIING-RR 227 VIN + +I +D ++ + GPDFPT +I R Sbjct: 281 VINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDFPTGGVIRTTRE 340 Query: 228 GIEEAYRTGRGKVYIRARAEVEVDAK----------------TGRETIIVHEIPYQVNKA 271 + + Y +G+G V I+++ E + R +I++++IPY Sbjct: 341 AMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIVINQIPYNTRIN 400 Query: 272 RLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG----EVVLNNLYSQTQLQ 327 +IE I +K + G++ ++DESD++G RIV+E+KR+ + ++ L T + Sbjct: 401 DIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMAKLQRLT--E 458 Query: 328 VSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVAL 387 ++ N + L +P NL I+ ++ R +V+ R+ L K + I+ A + Sbjct: 459 YNYKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKNLDIINAYIIIY 518 Query: 388 ANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGL 447 NI+ II + + + V Sbjct: 519 LNINTII------------------------------------NSFQNHQKGVYKVLKEE 542 Query: 448 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 507 + L + Q ++++ L L++L L + L ++ E QI +L + L I +L Sbjct: 543 FKLNDDQMKSVMRLTLRQLNQLNIDNLKEKSGEYTKQIEFYENVLNNDTNLYNEIISDLT 602 Query: 508 LVREQFGDKRR-TEITANSADINLED-------------------LITQEDVVVTLSHQG 547 +++ F + +R T I N E ++ +D ++ + G Sbjct: 603 ELKDHFKNIKRNTLIIYTDEGSNFETTVEGVEGPEGTSEDKVDPSVVESDDNIIIYNSLG 662 Query: 548 YVKYQPLS----------------------------------EYEAQRRGGKGKSAARIK 573 + L + R KG++ Sbjct: 663 RISKIKLDQKFYKSNKNKSIRISNPIHSHSTTPDTSIESSTPDSNKNNRAKKGETKIDEA 722 Query: 574 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITA 633 + N++ I+ + GR+ + +L +G + L ++ DE I Sbjct: 723 AALEVGYCSNNNSNKIIIILKN-GRIMHVNSSKLKLCK---KGYDMFKYLGIKNDEMIEY 778 Query: 634 ILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 693 I + + + + + NG + N + K+ +KL ++ I + Sbjct: 779 ITSIGKHLGDI-IMVGYGNGIMTICNTNRLNLKLSKTKLNLKLNLKNKEIKFFFNYNLNH 837 Query: 694 V------MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTA 747 + + + G ++ S+ V+ IRL +GD+VVS + IL Sbjct: 838 ISQNPFLFICTKRGYCIKISLRSIMEKFDKKKNVKLIRLHKGDEVVSSCLANDQQHILIL 897 Query: 748 TQN----------GYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMM 797 T G K + + + KG ++ ++++ G + D+ + Sbjct: 898 TSKGKHQRHNLYVGKYKLININDIKLQKIKGKGYNILRNSQKSIKKSGGDNSSNLDEAVS 957 Query: 798 ITDAGTL 804 T+ + Sbjct: 958 CTNVDKI 964 Score = 44.5 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 28/172 (16%) Query: 534 ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF 593 I+Q + + +GY L + K R+ + D + +AN HIL Sbjct: 838 ISQNPFLFICTKRGYCIKISLRSIMEKFDKKKNVKLIRLHKGDEVVSSCLANDQQHILIL 897 Query: 594 SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 653 +S+G+ + L L+ + + + + + + + Sbjct: 898 TSKGKHQR---HNLYVGKYK--------LININD-------IKLQKIKGKGYNILRNSQK 939 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 ++KK + G + L + VD + ++L S G + + Sbjct: 940 SIKK----------SGGDNSSNLDEAVSCTNVDKIKEKKNILLISKGGILCK 981 >UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LCM1_PLAKH Length = 1173 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 212/927 (22%), Positives = 401/927 (43%), Gaps = 142/927 (15%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-YKK 65 E V I + L ++L YA +I+ R L D RDGLK V RR++++M + K+ YKK Sbjct: 172 EYHDVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKSSYKK 231 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L++G GNFGS++ + AAAMRYTE Sbjct: 232 CARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSVEYN-AAAMRYTEA 290 Query: 126 RLAKIAHELM-ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++++ ++ E +++V N+DG E P V+ +K+P LL+NG SGIAV + +NIP Sbjct: 291 KVSNFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGCSGIAVSILSNIPC 350 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIR 243 HNL +VIN ++++ D +I + L I GPDF T II + ++ Y+TG+G + IR Sbjct: 351 HNLVDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQNVYQTGKGNIEIR 410 Query: 244 ARAEVEVDAK---------------------TGRETIIVHEIPYQVNKARLIEKIAELVK 282 + +E G + +++ +P V LIE + ++ Sbjct: 411 SNVFLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVKPNELIENMINILN 470 Query: 283 EKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVVLN---NLYSQTQLQVSFGINMVA 336 EK+ E + +RDES+K+ MRIV+E+++++ E + + ++ TQ+Q+++ N V Sbjct: 471 EKKNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKYTQMQITYHCNFVC 530 Query: 337 LHH-GQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 + H +LK + + +R + + + + + HI++ + I II Sbjct: 531 IGHQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDLYILIQKKILEIIS 590 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 ++ E K N + L + Q Sbjct: 591 FLQKNQNIEEIKNFFKEN----------------------------------FKLNDYQI 616 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 IL +++QKL +++ +++L ++ + ++ + D++ +I ++L ++ ++G Sbjct: 617 HHILSMKIQKLVNIKNVDFCTHKEQILARMEQNRDLISNVDKIKRLIIDQLTYIKNKYG- 675 Query: 516 KRRTEITANSADINLEDLITQEDVVVTLSHQG-YVKYQPLSEYEAQRRG--GKGKSAARI 572 + + V + + + K L+ A+R G G G A + Sbjct: 676 ------INSVGRFAPPQSVKYRYVYINPPERNHHFKEHSLALVNAERDGPSGYGGDAEDL 729 Query: 573 KEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERIT 632 K E I + + + + ++ LP+A R RG ++ + I Sbjct: 730 KGERKISKKDTLSDEIR----NQEEQQTPVEDPALPKA-RNLRGVKKIDPTTQYRQTYID 784 Query: 633 AILP--VTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI-------------KLV 677 +I + + + T G VKK + E + + + KL Sbjct: 785 SIHTDVKNVYNNDYVLVLITYGGYVKKIKVAEKLKNHQNNIIKLSNVKYILKENEEKKLK 844 Query: 678 DGDELIGVD--------------------------------LTSGEDEVMLFSAEGKVVR 705 DG + L +D+++L ++ K Sbjct: 845 DGGAPVEAANVVESGEEGANSMSAKSSSLNAINCYKVKKSILCRNKDKLLLTDSQNKAYI 904 Query: 706 FKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRGDGAILTA-TQNGYGKRTAVAEY 761 ++ ++ G + I + + + + L ++NG K + Sbjct: 905 LNVYDLQTSSYDSKGTPINQVIHCSKN--ITGMTKFEENKKYLIVCSENGKMKVINNDVF 962 Query: 762 PTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQG 821 K + KG+ K + D ++ T +G +++ ++ I +N+ G Sbjct: 963 LKKKK--KGIRLFKNKKDIHFSYCNFS----DNCIVGTASGHIIQFPLANFKISKKNSLG 1016 Query: 822 VILIRTAEDENVVGLQRVAEPVDEEDL 848 I +++ VV L +A DE+++ Sbjct: 1017 NKCINLGKNDKVVDL--LAYDNDEKNV 1041 Score = 138 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 66/366 (18%), Positives = 141/366 (38%), Gaps = 63/366 (17%) Query: 530 LEDLITQEDVVVTLSHQGYVKYQ-----------PLSEYEAQRRGGKGKSAARIKEED-- 576 E L ++ ++ LS+ Y+ + P+ G +G ++ K Sbjct: 815 AEKLKNHQNNIIKLSNVKYILKENEEKKLKDGGAPVEAANVVESGEEGANSMSAKSSSLN 874 Query: 577 -----FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI 631 + + ++ D +L S+ + Y + VY L ++ ++G PI ++ ++ I Sbjct: 875 AINCYKVKKSILCRNKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKN--I 932 Query: 632 TAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 691 T + E + + + NG +K F + + G I+L + I + Sbjct: 933 TGMTKFEE--NKKYLIVCSENGKMKVINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFS 987 Query: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA------IL 745 D ++ +A G +++F ++ + N+ G + I LG+ DKVV L+ D I+ Sbjct: 988 DNCIVGTASGHIIQFPLANFKISKKNSLGNKCINLGKNDKVVDLLAYDNDEKNVGNFQII 1047 Query: 746 TATQNGYGKRTAVAEYPTKSRATKGVISIKVT--ERNGLVVGAVQVDDC----------- 792 ++ G+GK + E + + KG +K +R+ ++ G V ++ Sbjct: 1048 FLSKGGHGKMINLEELKVQKKKGKGYKIMKFKRAKRDAVLQGEVAKEEDKENKNHEKYVK 1107 Query: 793 -------------------DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 D ++MITD L+R ++ + R I + ++ + Sbjct: 1108 DADEFLGFKLYDMTKKNDNDFLIMITDHAILIRKNITLLKKKNRKHSSQIYAKLSKLNRL 1167 Query: 834 VGLQRV 839 V + Sbjct: 1168 VYFDIM 1173 >UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodium RepID=A5K033_PLAVI Length = 1263 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 164/540 (30%), Positives = 273/540 (50%), Gaps = 66/540 (12%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-YKK 65 E V I E L ++L YA +I+ R L D RDGLK V RR++++M + K YKK Sbjct: 149 EYYDVEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKK 208 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L++G GNFGS++ + AAAMRYTE Sbjct: 209 CARIVGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVEYN-AAAMRYTEA 267 Query: 126 RLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++ L+ ++ +E V++V N+DG E P V +K+P LL+NG SGIAV + +NIP Sbjct: 268 KISNFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPC 327 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIR 243 HNL +VIN ++++ + I + L I GPDF T II + ++ Y TGRG + IR Sbjct: 328 HNLVDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIR 387 Query: 244 ---------------------ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK 282 A E G + +++ +P V LIE + ++ Sbjct: 388 SNVFLEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILN 447 Query: 283 EKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVVLNNL---YSQTQLQVSFGINMVA 336 EK+ E + +RDES+K+ MRIV+E++++ E + + L + TQ+Q ++ N V Sbjct: 448 EKKNEHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVC 507 Query: 337 LHH-GQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 + H +LK + + +R + + + + + HI++ + I II Sbjct: 508 IGHQNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEIIS 567 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 ++ E K N + L + Q Sbjct: 568 FLQKNQNIEEIKNFFKKN----------------------------------FQLNDYQI 593 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 Q IL +++QKL +++ +++L ++ + ++ DR+ +I EEL ++ ++G Sbjct: 594 QHILSMKIQKLVNIKNVHFGPHKEKILTRMRDNRDLIADVDRIKRLIIEELAYIKNKYGT 653 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 15/216 (6%) Query: 578 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV 637 + + ++ D +L S+ + Y + V L ++ ++G PI ++ + IT + Sbjct: 943 VKKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSK--SITGMAKF 1000 Query: 638 TEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLF 697 E + + + NG +K F + + G I+L + I + D ++ Sbjct: 1001 EE--SKKYLIVCSENGKMKIINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFSDNCIVG 1055 Query: 698 SAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA------ILTATQNG 751 +A G +++F S+ + N+ G + I LG+ DKVV L+ D I+ ++ G Sbjct: 1056 TASGHIIQFPLSNFKISKKNSLGNKCISLGKNDKVVDLLTYENDEKSVKKFQIIFLSKGG 1115 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVT--ERNGLVVG 785 +GK + E + R KG +K +R + G Sbjct: 1116 HGKMVNLGELKVQKRRGKGYKIMKFKRAKRGAPIQG 1151 >UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from direct assay n=9 Tax=Plasmodium RepID=Q8I0X3_PLAF7 Length = 1222 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 180/723 (24%), Positives = 327/723 (45%), Gaps = 108/723 (14%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-YKK 65 E V I E L S+L YA +I+ R L D RDGLK V RR++++M + +K YKK Sbjct: 171 EYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKK 230 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L+ G GNFGS++ + AAAMRYTE Sbjct: 231 CARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVEYN-AAAMRYTEA 289 Query: 126 RLAKIAHELM-ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++++ ++ E V+++ N+DG E+ P V+ +KIP LL+NG SGIAV + ++IP Sbjct: 290 KISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPC 349 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI-EEAYRTGRGKVYIR 243 HNL +V N C+ ++ +E+I + L I GPDF T II + I + Y +G+G IR Sbjct: 350 HNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIR 409 Query: 244 ARAEVEVDAKTGR---------------------ETIIVHEIPYQVNKARLIEKIAELVK 282 + E + + II+ +P V LIE I L+ Sbjct: 410 SNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKPNELIENIINLLN 469 Query: 283 EKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVVLN---NLYSQTQLQVSFGINMVA 336 +K+ E + +RDES+K+ MRIV+E+K+ + E + N L+ T +Q+S+ N V Sbjct: 470 DKKNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVC 529 Query: 337 L-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 + + +LK I + +R + + + + + + +I++ + I II Sbjct: 530 IGYENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNIIDLYLIIQNKILDIIT 589 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 + + + L N + L +Q Sbjct: 590 FFQKNQNIEQIQLYLKNN----------------------------------FKLNPEQI 615 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 + IL ++LQKL +++ + + +++ QI I+ + + +I +EL ++ ++G Sbjct: 616 KYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYG- 674 Query: 516 KRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE 575 ++N + +I Y+ + + ++ + + Sbjct: 675 ---------IHNLNKQCIIPSTPKY----KYSYINSEYHPNFSKNKQIIDTYNTVSTNDN 721 Query: 576 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQ-LPEATRGARGRPIVNLLPLEQDERIT-- 632 I+ + + + V V++ + ++ + N+ +++ +T Sbjct: 722 -NINHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISSDIS-----NNIKNSDKNSSLTKN 775 Query: 633 ----AILPVTE-------------FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK 675 ++P + + + T G +KK + E + + IK Sbjct: 776 QDSDNMMPYRNTYIDSLDNNMKDIYNNDEVLILITYGGYIKKIKINEKLKNHSN--NIIK 833 Query: 676 LVD 678 L + Sbjct: 834 LSN 836 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 15/210 (7%) Query: 578 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV 637 I + ++ D IL + + + + VY L ++ ++G PI ++ ++ I + Sbjct: 916 IKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSSKN-----ITGI 970 Query: 638 TEFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVML 696 T+F+E + + + NG +K F + + G IKL + I + D ++ Sbjct: 971 TKFQENKKYLIVCSENGKMKVINNDVFLKRKKKG---IKLFKNKKNIYFSYCNFNDNCIV 1027 Query: 697 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG------AILTATQN 750 + G +++F SS + N+ G + I L + DKVV L+ + I+ T+N Sbjct: 1028 GTKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKN 1087 Query: 751 GYGKRTAVAEYPTKSRATKGVISIKVTERN 780 G+GK + E + + KG +K + Sbjct: 1088 GFGKMINLNELKIQKKKGKGHRIMKFKKSK 1117 >UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2480 Length = 417 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 150/417 (35%), Positives = 254/417 (60%), Gaps = 3/417 (0%) Query: 435 EWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGS 494 + E + L+E QA+AIL ++L++LTGLE E + +E +ELL I +L IL Sbjct: 1 KTQEEAEKSLIARFGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILAD 60 Query: 495 ADRLMEVIREELELVREQFGDKRRTE-ITANSADINLEDLITQEDVVVTLSHQGYVKYQP 553 ++ +I+ EL ++E++GD+RR++ I + E+LI +ED VV L+ + Y+K Sbjct: 61 EQEILNIIKNELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVLLTSENYIKRTL 120 Query: 554 LSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 613 S+Y Q RGGKGK KE D I+ ++ A THD +L F++RGRV+ +K Y++P A+ Sbjct: 121 ASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQ 180 Query: 614 ARGRPIVNLLPLEQDERITAILPV-TEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 A+G VNLL L+ +E+ITAI+ + ++ +FMAT GT+KKT + ++ +RT G + Sbjct: 181 AKGVAAVNLLQLQPEEKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLI 240 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKV 732 AIKL DGDEL + +SG D++++ ++ G+ +RF E R+MG GVRG+RL D V Sbjct: 241 AIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRGVRLRPNDSV 300 Query: 733 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 V + + D +L ++NGYGK T ++ +P+ R G+ + VT + G ++ + Sbjct: 301 VGMDIANDDRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIISVKTIQQD 360 Query: 793 D-QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848 D + ++++ G +R + +I ++GR TQGV +++T++D++V + ++E E+ Sbjct: 361 DIEALLVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMSERSSNEES 417 >UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteria RepID=D1N6B5_9BACT Length = 877 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 168/599 (28%), Positives = 272/599 (45%), Gaps = 91/599 (15%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + ++L+YA VI RA+PDV DGLKPV RRVL+A+ + ++ K A VVG+ Sbjct: 48 FRTMMDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGN 104 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + YHPHG++++ D +V +A + + QGNFG+I G AAA RY E L+ + Sbjct: 105 TM-HYHPHGNASIEDALVVLA----NKEYYITRQGNFGNILTGSPAAAGRYIECSLSPLG 159 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 HE++ + +FVD YDG P +P K+P+LL+ GS GIAVGMAT I PHN E++ Sbjct: 160 HEVL--FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELL 217 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 +A + E+ + PDF +++ R Y G GK+ +RA+ E+ Sbjct: 218 EAEIAVLRGEEFELY--------PDFQQGGLMDVRE-----YNDGNGKITLRAKIEI--- 261 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 GR+ +I+ EIP + L+ I + ++ +++ IS++ D + D + I + R Sbjct: 262 --VGRD-LIIREIPATTSTETLVASIEKAAEKNKIK-ISSVNDYTT-DKVEIKVVPTRGY 316 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 E + LY T VS +NM + +P M++ +++ E + R +L Sbjct: 317 DPEKTMQGLYMYTDCSVSISVNMTVIRENRPVQMSVSEVLRRNADKLLEYLKRELEIDLA 376 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 K D H + N I + I + E T + A L +L R Sbjct: 377 KQEDLFHAKTLAQIFFEN--RIYKKIEECKSEKEEYTEVHAG---LAPFRHLLRR----- 426 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 +T+Q +L L +++++ + EK E E+L ++ E+ + Sbjct: 427 -----------------DVTDQDIDKLLALPVRRISRFDIEKNQRELAEVLAKMEEIKKN 469 Query: 492 LGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 LGS L + L + +++G RRTEI + E + +E + + G+ Sbjct: 470 LGS---LKKYAINYLRKLLDKYGKDFPRRTEIE------HFEKIDRREAALNNI-KVGWD 519 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 + G IK +D +L N D LC G S KV LP Sbjct: 520 RK-------------NGYVGTSIKSDD----ILACNEFDRFLCVEKSG---SYKVIALP 558 >UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLW5_FIBSS Length = 846 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 152/647 (23%), Positives = 288/647 (44%), Gaps = 92/647 (14%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E +LDYA VI+ RA+P DGLKPV RR+L++M + + Y+K A +VG Sbjct: 18 LERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQKVATIVGR 74 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKIA 131 + YHPHGD+++ D +V + Q + +L+D QGN+G+ GD AAA RY E RL A Sbjct: 75 TM-AYHPHGDASIGDALVGLGQ----KNLLIDTQGNWGNPYTGDRAAAPRYIEGRLTPFA 129 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 +++ ET +++ +YDG + P +P K P LL G GIAVG++T+I PHN E+ Sbjct: 130 VDVV--FNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELC 187 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEVE 249 +A + + ++ PDF T II+ Y G+ GKV +RA+ E Sbjct: 188 EASIACLRGKKFTLY--------PDFFTGGIIDVSD-----YNDGQRGGKVKVRAKIE-- 232 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 K +T+ + EIPY LIE I + + +++ I + D + + G+ I++ ++ Sbjct: 233 ---KVDNKTLAIREIPYGTTTVSLIESIVKANDKGKIK-IKHVDDNTSQ-GVEILVHLQP 287 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 +V ++ LY+ T + S + PK + + DI+ H +++ E Sbjct: 288 GTDPQVAIDALYAFTDCEKSLSPCTCVIIDKHPKFVGVSDILKLNTEHTVKLLEWELANE 347 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 L+ D+ H+ + + + E+I+ A + + Sbjct: 348 LKHLEDKWHMTTLEKIFIEK--EVYEVIKKAKDREQIIRLVREGLTPYLKRLHRQT---- 401 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 +T+++ ++++ +++++ + EK +EL + IA+ Sbjct: 402 --------------------VTDEEIGKLIEIPIRRISHYDREKADQLLQELEENIAKCK 441 Query: 490 RILGSADRLMEVIREELELVREQF--GDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 + + +++ + + +++ G +RRT+I A +N V V L++Q Sbjct: 442 Y---NQEHIIDYAVNHFKNILKKYGEGKERRTQI-AEFGKVN--------AVHVALANQK 489 Query: 548 -YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 YV +G +K+E+++ + +D ++ F + G S KV + Sbjct: 490 LYVNR------------KEGFVGTGMKKEEYL---FDVSEYDDLIVFKADG---SFKVVK 531 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 653 + + + +V + + I ++ + + G Sbjct: 532 VSDKDFVGKDIILVEKFNKDDERHIYNVIHQDGKDGYAYIKRFNVGG 578 >UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bacterium Ellin514 RepID=B9XEN7_9BACT Length = 701 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 150/651 (23%), Positives = 287/651 (44%), Gaps = 96/651 (14%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 + + + S+L+YA VI RA+P++ DGLKPV RR+L++++ + + K A Sbjct: 56 VETPLHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHE---KDDGRFIKVAT 112 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRL 127 + G +YHPHG++A+ D +V + + + L++GQGNFG+I GD AAA RY E RL Sbjct: 113 ISGHC-AQYHPHGEAAIGDALVVI----TNKRYLIEGQGNFGNIYTGDPAAAPRYIECRL 167 Query: 128 AKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 ++A EL E +FV +YDG K P +P+K+P LL+ G+ GIAVGM+ I PHN Sbjct: 168 TELARNELF---NDELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHN 224 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 E++ +A + + + PDFPT +++ R Y G+G + +RA+ Sbjct: 225 FPELLEAQIAILKKQPFKVL--------PDFPTGGLMDARE-----YADGKGSIKVRAKI 271 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 + + ++ T+++ EIP LI I + ++ +++ I ++ D + ++ I I+ Sbjct: 272 KAKDES-----TVVIKEIPPMTTTDSLIGSIEDASRKGKIK-IKSINDFTSEEA-EIEIK 324 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 + +++ LY+ T ++S ++ + + +P M + +++ + + R Sbjct: 325 APSGVSADQLIDALYAFTDCEMSISSRIIVIRNNRPVEMTVSEVLRENTAQLVDTLKREL 384 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 + +K ++ H + + + N I + I T A+ Sbjct: 385 ELKEKKLQEELHFKTLVRIFIEN--RIYKKIEQCKTNEAVYEAV---------------Y 427 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 G R E + L + + +L +R+++++ + K +E ++ ++ Sbjct: 428 DGFKPFRKEMIR----------DLVDTDVEMLLGVRIRRISLFDINKHREEIDKIKADLS 477 Query: 487 ELLRILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLS 544 E + L + L + LE + E++G R T+ ++ ++ +D+ + V Sbjct: 478 ETAKHLKN---LTKYAIGRLEALLEKYGPIYPRLTK-SSRYDEVEAKDVAFKAFKVAYDR 533 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GYV G S + + D +L G KV Sbjct: 534 ESGYV--------------GHKVSGEEFRVD--------CTKFDKLLLIFRDGHY---KV 568 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 +L E + G +V + +RI + E + T G + Sbjct: 569 TELQE--KLFVGPDVV-YCGIPDRDRIFTLAYTNR--EATYLKRFTFGGII 614 >UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria RepID=A4CLF9_9FLAO Length = 907 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 172/732 (23%), Positives = 313/732 (42%), Gaps = 118/732 (16%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 K +LDYA VI+ RA+P + DG KPV RR+++A+ + + Y K A VVG + +Y Sbjct: 28 KDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEM---DDGRYNKVANVVGQTM-QY 83 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++ D +V++ Q + +L+D QGN+G+I GD AAA RY E RL+K A E++ Sbjct: 84 HPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDGAAASRYIEARLSKFALEVV- 138 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 + ++ +YDG +K P +P K P LL G+ GIAVG++T I PHN E+I+ + Sbjct: 139 -FSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELIDASIK 197 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEVEVDAKT 254 ++ + + PDFPTA II+ Y G GKV +RAR A+ Sbjct: 198 HLQGKRFKLY--------PDFPTAGIID-----IGNYNDGERGGKVRVRARI-----AQQ 239 Query: 255 GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGE 314 + T+++ EIPY N + LI+ I + + + +++ + I++ + + Sbjct: 240 DKNTLVISEIPYGTNTSSLIDSILKA--NDKGKIKIKKIEDNTAAEVEILVHLPSGISPD 297 Query: 315 VVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKAR 374 ++ LY+ T + S + +P M + +++ H E++ L + + Sbjct: 298 KTIDALYAFTACETSISPLGCIIEDNKPVFMGVSEMLRRSTDHTVELLQAELEILLGELQ 357 Query: 375 DRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARP 434 ++ H + + N I I T G AA Sbjct: 358 EQWHAASLERIFIEN--RIYRDIEEEET-----------------------WEGVIAAIG 392 Query: 435 EWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGS 494 + L+P G +TE+ + ++R+++++ + +K + L +IAE L Sbjct: 393 KGLKPHTGHLRR--EVTEEDIVRLTEIRIKRISRFDLDKAQEHLDNLEKRIAETKHHLA- 449 Query: 495 ADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 554 L + + +++ FG R ++I + D I VV+ + YV + Sbjct: 450 --HLTDYAIDYFRELKKNFGAGR-----ERKSEIRVFDEIEATKVVIRNTKL-YVNRE-- 499 Query: 555 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 614 +G +++++++ + D I+ F+ G++ +V ++ Sbjct: 500 ----------EGFIGTSLRKDEYVTD---CSDIDDIIVFTKSGQMMITRVD-----SKTF 541 Query: 615 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG---TVKKTVLTEFNRLRTAGK 671 G+ I++ A+ + + G VK+ +T F R Sbjct: 542 VGKNIIH----------VAVYKKKDKRTTYNMIYKDGRGGPSYVKRFNVTAF--TRDKLY 589 Query: 672 VAIKLVDGDELIGVDL-TSGEDEVMLFS--AEGKV--VRFKES--SVRAMGCNTTG---- 720 E++ +GE EV+ + G + +++ V G N G Sbjct: 590 DLTTGKAQSEVLYFTANPNGEAEVVTVNLRQSGSIKKLKWDLDFADVMIKGRNAKGNIVT 649 Query: 721 ---VRGIRLGEG 729 V+ I L E Sbjct: 650 KYPVKRIELKEK 661 >UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Treponema RepID=Q73KU9_TREDE Length = 703 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 165/731 (22%), Positives = 305/731 (41%), Gaps = 132/731 (18%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 IE ++L+YA VI RA+PD+ DGLKPV RR+L+++ + + + K A V+G Sbjct: 4 IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEM---DDGKFHKVANVIGH 60 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + KYHPHGD+++ + +V +A + + +D QGNFG+I GD A+A RY E R+ + A Sbjct: 61 CM-KYHPHGDASIGNALVVLA----SKELFIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 + D+ +YDG K P K+P +L G+ GIAVGM+T I PHN+ E+I Sbjct: 116 KTIF--YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 A++ + ++ PDFPT +I+ Y G GKV +RA+ + Sbjct: 174 EAEKAFLSGKSFAL--------FPDFPTGGLIDVSE-----YEDGLGKVLVRAKLDT--- 217 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 + + I++ E+P+ +I I K +V+ IS + D + ++ + I +++ R Sbjct: 218 --SDEKRIVIRELPFGSTTESMINSIEAASKAGKVK-ISEISDYTGEN-VEIELKLPRGV 273 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 V++ LY+ T+ + S N++ + P + + DII + +++ +E Sbjct: 274 YSADVVDALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYERA 333 Query: 372 KARDRAHILEALAVAL-ANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 +R H+ + + I IE ++ A A G Sbjct: 334 MLTERLHLRTLERIFIEERIYKKIETMKTAEGVINA------------------VIKGFV 375 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 + E + +TE +L + +++++ + K +E +E+ +++ E+ + Sbjct: 376 PFKKELIR----------DVTEDDVDKLLKIPIRRISLYDINKNREEVREINNRLKEIAK 425 Query: 491 ILGSADRLMEVIREELELVREQFGDK---RRTEITANSADINLEDLITQEDVVVTLSHQG 547 +L + L L+ + + + R+TEIT +++++ +T++ + G Sbjct: 426 LLKN---LKGYAISVLDGIAAKLPAEEFKRKTEITG-FTKVDVKEAVTRDTALRYDEETG 481 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Y+ G S K+ +L + +D I G VY+ V + Sbjct: 482 YL----------------GTSVTTGKD------ILRVSPYDRIFVLRKSG-VYT--VMDV 516 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 P+ G + E ++ +L + + T +K+ + + R Sbjct: 517 PDRVFVDTGMW---YCGFAEKEELSKVLFTVIYRDSK-----TKYAYIKRARVEGYILNR 568 Query: 668 TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE-------GKVVR---------FKESSV 711 D L EV+ S + + FK S Sbjct: 569 ------------DYL----FAPDNTEVLFVSTKLKFSFKLNYAPKPRVKKIEEEFKADSF 612 Query: 712 RAMGCNTTGVR 722 G GVR Sbjct: 613 AEKGLKAQGVR 623 >UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opitutaceae RepID=B1ZME1_OPITP Length = 708 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 147/719 (20%), Positives = 294/719 (40%), Gaps = 116/719 (16%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 ++ +LDYA VI+ RA+P + DGLKPV RR+L+ M + + + K A +VG + ++ Sbjct: 71 RNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEM---EDGRFHKLANIVGATM-RF 126 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++ +V + Q R LV+ QGNFG++ GD AAA RY E RL A +++ Sbjct: 127 HPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARLTAFAKDVL- 181 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 +T + +YDG + P +P K P +L+ G+ GIAVG+AT I PHN ++ + Sbjct: 182 -FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNFNDLCRAAIN 240 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEVEVDAKT 254 ++ + I PDFPT + + Y G GKV IRA+ E+ Sbjct: 241 HLQGKTFRIY--------PDFPTGGVADFSE-----YNDGERGGKVKIRAKIEI-----R 282 Query: 255 GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGE 314 + + + E+P+ LIE I + +++ I + D++ D + I++ + + + E Sbjct: 283 SKYLLAITELPFGSTTESLIESILAANAKGKIK-IRHV-DDNTADAVEILVHLPQGSDPE 340 Query: 315 VVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKAR 374 ++ LY T Q + + +P + +++I+ V + ++ R + Sbjct: 341 KLIQQLYVFTACQTNLSPAACVIEDDKPHFLGVREILKRSVDKTKALLKRELEIRQAELE 400 Query: 375 DRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARP 434 + H + + + I I + T + Sbjct: 401 QQWHWDSLERIFIE--ERIYRRIEKSKTWQSVLDEIREGLQPF----------------- 441 Query: 435 EWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGS 494 ++ +T+ + ++R+++++ + + K++ ++ E L Sbjct: 442 --------LKQLRRPVTDDDITRLTEIRIKRISAYNRFQADEAIKKIEAELRETKANL-- 491 Query: 495 ADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQ 552 L E ++E++G KRRT IN ++++ + G++ Sbjct: 492 -KALTAYAVAWFEQLQEKYGKGLKRRTS-YDEIEQINAAEVVSANQRLYVNREDGFI--- 546 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 ++ +++ D ++C G S+KV ++ E + Sbjct: 547 ----------------GLNWRQHEYVQD---CTILDSVVCLMRDG---SLKVSKVAE--K 582 Query: 613 GARGRPIV--NLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG 670 GR I+ + P + D ++ + + K+ + +R + Sbjct: 583 VFMGRDIIHCAVFPKDGDPNFYTMVYQDKE---------SGKAFAKRFQIGGLSRDK--- 630 Query: 671 KVAIKLVDGDELIGVDLTSGEDE------VMLFSAEGKVVR---FKESSVRAMGCNTTG 720 ++ +G ++ ++++ E E + + G VR F+ V + G Sbjct: 631 LYSLVKSEGSRVVYLEISKTEKEMPKKLRIFIDGRSGARVREFDFELDRVPVSSRSAKG 689 >UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRS7_9BACT Length = 808 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 144/589 (24%), Positives = 262/589 (44%), Gaps = 85/589 (14%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + + +++DYA VI RA+PDV DGLKPV RR+L+ + + + K A +VG Sbjct: 33 LNRMMTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTLFK---ADDGKFHKVANIVGA 89 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + YHPHGDS++Y +V +A + ++ QGNFG+I GD+A+A RY E RL+ +A Sbjct: 90 CM-AYHPHGDSSIYGALVTVA----NKEYFIEKQGNFGNILTGDNASAARYIECRLSPLA 144 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 E + ET +FVD+YDG K P +P K+P LL+ G+ GIAVGMAT I PHN E++ Sbjct: 145 RETL--FNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELL 202 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 + + + I PDF I++ Y GRGKV +RA+ ++ Sbjct: 203 KAQIKILRGQRFEIY--------PDFLCGGIMD-----ISQYDFGRGKVTVRAKIDI--- 246 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 +T+++ ++ L+ I E K +++ I++++D + + + I I + R Sbjct: 247 --LNNKTLVIKQVAPGTTTESLMSSIEEAAKNGKIK-IASIQDYT-AEHVEIEINLPRGV 302 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 + LN LY+ TQ +VS N+ + G+PK +++ +++ + ++ + E Sbjct: 303 QADWALNALYAFTQCEVSLSPNITVIQRGRPKEIHVGEVLHHNTQTLVNILRWELLNEQN 362 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 K ++ H + + + I + I + +E A+ + Sbjct: 363 KLNEKYHDRTLERIFIE--ERIYKKIEECTSQSEVFEAVRSGLKPF-------------- 406 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 + ++++ + +L + +++++ + K E +E+L + E+ Sbjct: 407 -----------LDQLRRDVSDEDIERLLRIPIRRISLFDINKNNKELEEILKALKEVAYN 455 Query: 492 LGS-ADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 L D + I+ + +Q+ R TEI + E I +V + G Sbjct: 456 LEHLKDYTINFIKNLISKYGKQY--PRLTEIKSIEKVDAKE--IAVANVKLGYDKVG--- 508 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 G +I + D I+ + G+ Sbjct: 509 ---------------GYIGTQINNG----NHIKCTEFDRIIILTKDGKF 538 >UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella RepID=D1QVZ0_9BACT Length = 978 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 133/597 (22%), Positives = 267/597 (44%), Gaps = 82/597 (13%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + K+ +LDYA VI+ RA+P + DGLKPV RR+L++M + + Y K A +VG Sbjct: 114 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 170 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + ++HPHGD+++ D +V+M Q + +L+D QGN+G+I GD AAA RY E RL+K A Sbjct: 171 TM-QFHPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFA 225 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 +++ +T D+ +YDG K P +P K P LL G+ GIAVG+++ + PHNL E+ Sbjct: 226 LDVV--FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 283 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 + + Y+ ED + PDFPT I+ + Y G+ ++ RA++E Sbjct: 284 DAAIKYLRGEDFQLY--------PDFPTGGAIDVSK-----YNDGQRGGVLKVRAKIE-- 328 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 K +T+++ EIP+ LI+ I + + + +++ D++ + I + + Sbjct: 329 -KLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKIKAKR--VDDNTAAEVEIQVHLAPGV 385 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 + ++ LY+ + +++ N + +P + + D++ V ++ + Sbjct: 386 SSDKTMDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHGVDRTMGLLRKELQIRRG 445 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 + ++ + + + + A M E Sbjct: 446 ELLEQLFFASLERIFIEQR--------------------IYKEKKFEQAADMNEAVAFVD 485 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 + +P+F +T ++++++Q++ +K + + ++AE+ Sbjct: 486 LKLTPFKPDFIR-----EVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEH- 539 Query: 492 LGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 + + +V ++ ++G+ R TEI + + + + + + Y+ Sbjct: 540 --DLEHMTDVTINWFMFIKNKYGNEHPRHTEIRSFDTIDSAKVVEANQKL--------YI 589 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 Q +G +K+++F+ + D I+ F G+ +KV Sbjct: 590 NRQ------------EGFIGTGLKKDEFVCN---CSDIDDIIIFYKNGKYKIIKVAD 631 >UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_ECOLX Length = 211 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 210/211 (99%), Positives = 210/211 (99%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSARVVGDVIGKYHPHGD AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH 211 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH Sbjct: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH 211 >UniRef50_C0X5K0 Possible DNA topoisomerase IV subunit A (Fragment) n=2 Tax=Enterococcus faecalis RepID=C0X5K0_ENTFA Length = 465 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 152/501 (30%), Positives = 235/501 (46%), Gaps = 50/501 (9%) Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R+ V+ R FEL KAR R HI+ L AL+ +D +I IR + +AK LV+ Sbjct: 1 RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----- 55 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 Y TE+QA+AI+ L+L +LT + L +E Sbjct: 56 -----------------------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEE 86 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED--LIT 535 K L QIAELL IL + L V+++EL V++Q+G+ R T+I +I +E L+ Sbjct: 87 AKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVA 146 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 QEDVVVT++H+GY+K + Y A + G +KE DF+ NT DH+L ++ Sbjct: 147 QEDVVVTVTHEGYIKRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTN 201 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVN-LLPLEQDERITAILPVTEFEEGVKVFMATANGT 654 +G + V++LP+ G I +L L DE I A+ P E T G Sbjct: 202 KGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKTFVFITKAGM 261 Query: 655 VKKTVLTEFNRLRTAGKV---AIKLV-DGDELIGVDLTSGED--EVMLFSAEGKVVRFKE 708 +K+T + +F RT +KL D DE+ V LT+ +D +V L S G +R+ Sbjct: 262 IKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPL 321 Query: 709 SSVRAMGCNTTGVRGIRLGEGDKVVSLIVP--RGDGAILTATQNGYGKRTAVAEYPTKSR 766 V +G GV+ + L E D VV+ ++ GD I+ TQ G KR E R Sbjct: 322 YEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGR 381 Query: 767 ATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 A +G++ ++ ++N V + +++ T GT + I R + G +I Sbjct: 382 AKRGLMVLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVID 441 Query: 827 TAEDENVVGLQRVAEPVDEED 847 +D V+ + + V EE+ Sbjct: 442 EQKDGQVMEVHEMHSAVIEEE 462 >UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacteria RepID=GYRA_SPICI Length = 227 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 137/219 (62%), Positives = 173/219 (78%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 D +I ++I +E+K+ +LDYAMSVIV RA+PDVRDGLKPVHRR++YAM L + K Sbjct: 9 YDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEK 68 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSAR+VG+VIGKYHPHGD+AVY+ +VRMAQ FS RY L+DG GNFGS+DGD AAMR Sbjct: 69 QHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMR 128 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE +++KIA E++ D+EKET F+DNYDG+E+ P +P PNLLVNG+SGIAVGMATN Sbjct: 129 YTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATN 188 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTA 220 IPPHNL EVI+G +A + +I+ LM+ I GPDFPT Sbjct: 189 IPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227 >UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JAA3_9PORP Length = 899 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 161/761 (21%), Positives = 310/761 (40%), Gaps = 111/761 (14%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ + ++ +LDYA VI+ RA+P + DGLKPV RR+LYAM N K A++VG Sbjct: 47 SLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQ---LFENGHLHKVAKIVG 103 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMRYTEIRLAKI 130 + +HPHGD+++ D +V++ Q + L+D QGN+G ++ GD AAA RY E +L+ + Sbjct: 104 QTM-AFHPHGDASINDALVQLGQ----KGFLIDTQGNWGNTLTGDEAAAGRYIEAKLSSL 158 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ + + ++ YDGT P +P + P LL G+ GIAVG+++ I PHN E+ Sbjct: 159 ALEVL--FDSKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIYPHNPKEL 216 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 + +AY+ E + PDFPT +++ + Y G ++ RA++E Sbjct: 217 LEAAIAYLRGESFELY--------PDFPTGGLLD-----VDKYNDGHRGGALKCRAKIE- 262 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 K + + E+P+ LIE I + ++ +++ I + D + I I++ Sbjct: 263 --KIDDRVLSITELPFGKTTTSLIESILKANEKGKIK-IKHIDDMTAATA-DIRIQLPAG 318 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 + ++ LY+ T +V N + G P + + D++ +E++ + + L Sbjct: 319 VSTDKTIDGLYAFTDCEVGLSPNACVIKEGTPVFLGVSDLLKYSADRTKELLVAQLNYRL 378 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 + +D + + N I EA A + AM + Sbjct: 379 GEVQDALVTASLERIFIENR------IYKDKPFEEAACEADALDHVRKRIEAMEDLVFVR 432 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 +TE + +L++++ ++ EK + +L+ + + Sbjct: 433 P------------------ITEADLKRLLEIKMARILRFNIEKHEERIAQLMRDARTIEK 474 Query: 491 ILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQGY 548 L + + + + ++FG R+T I A I +I + + +G Sbjct: 475 HLAHST---QYTIDYYTRLLKEFGAGWTRKTTI-ARFGTIEATKVIEATE-KLYFDREG- 528 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 G + +K +F+ + D ++ G ++ ++ Sbjct: 529 -----------------GFAGTGLKNAEFVA---ECSLLDEMIVIFRNGTY---RISKIE 565 Query: 609 EATRGARGRPI-VNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 E RG + +N + I I+ + + G + +K+ +T +R + Sbjct: 566 EKKFIGRGEVLYINRFRRNDNRTIYNII-YRQGKRGPWL--------IKRCSITGISRDK 616 Query: 668 TAGKVAIKLVDGDEL--IGVDLTSGEDEVMLFSA---EGKVVRFKE--SSVRAMGCNTTG 720 I +G + + + V + +V+ F++ S V G G Sbjct: 617 D--YNLISDEEGSRITYFSANPNGEAETVRIALKPQPRMRVLTFEKSFSEVPIRGRGAKG 674 Query: 721 -------VRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYG 753 V+ I L G + D ++ NG G Sbjct: 675 NLVTRAEVQRITLKQRGASTLGGRKIWFDRDVMRINYNGQG 715 >UniRef50_C3X0L8 DNA gyrase subunit A (Fragment) n=1 Tax=Fusobacterium sp. 7_1 RepID=C3X0L8_9FUSO Length = 379 Score = 353 bits (907), Expect = 1e-95, Method: Composition-based stats. Identities = 146/379 (38%), Positives = 249/379 (65%), Gaps = 3/379 (0%) Query: 472 EKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE 531 EK+ E+KE+ I EL +L +++ +++++EL ++E++ DKRRT+I +I E Sbjct: 1 EKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPE 60 Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 591 DLI E++++T +++GYVK S+Y+AQRRGGKG SA E+D+ +++ A+T D I+ Sbjct: 61 DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIM 120 Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 F+ RG+VY+++ Y++P+ +R +RGR + N++ L + E++ + + EF +V T Sbjct: 121 VFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPEKEVVFITK 180 Query: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG--EDEVMLFSAEGKVVRFKES 709 NG +KKT L EF + +G +AIK + D++I V L ++E+++ + +G RF Sbjct: 181 NGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTD 240 Query: 710 SVRAMGCNTTGVRGIRLGEGDKVVS-LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 768 ++RA G +T GV+ I L +GD VVS +++ + ILT T+NGYGKRT++ EYP +R Sbjct: 241 TIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKRTSLDEYPQYNRGG 300 Query: 769 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTA 828 KGVI++KV E+NG VV ++V + +++M IT G ++RT ++EIS +GR TQGV +++ A Sbjct: 301 KGVINLKVNEKNGKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIGRATQGVRIMKVA 360 Query: 829 EDENVVGLQRVAEPVDEED 847 +DE V + ++ + D E+ Sbjct: 361 DDEKVAAITKIKKEEDLEN 379 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%) Query: 736 IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 795 + + + I+T T GY KR ++Y + R KGV ++ E + D I Sbjct: 61 DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIE-DDYAEKITSASTLDTI 119 Query: 796 MMITDAGTLVRTRVSEISIVGRNTQG---VILIRTAEDENVVGLQRVAEPVDEEDL 848 M+ TD G + R EI + R ++G +I +E E V + E + E+++ Sbjct: 120 MVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPEKEV 175 >UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bacteria RepID=C6XSV0_PEDHD Length = 977 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 159/763 (20%), Positives = 310/763 (40%), Gaps = 109/763 (14%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 T + I ++ +LDYA VI+ RA+P + DGLKPV RR+++++ + + + K+A Sbjct: 16 TVIPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEM---DDGRFNKAAN 72 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRL 127 V+G+ + KYHPHGD+++ D +V++ Q + +L+D QGN+G I GD+AAA RY E RL Sbjct: 73 VIGNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDNAAAPRYIEARL 127 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +K A+E++ +T + +YDG P +P K P LL G+ GIAVG+AT + PHN Sbjct: 128 SKFANEVV--FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNF 185 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+++ + + +I PDF T + E R GR + +RA+ Sbjct: 186 IELLDASIEALQGHRPNIL--------PDFFTGG-MADFSAYNEGMRGGR--IRVRAKI- 233 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 + ++T+++ EIPY +I+ I L + + +++ + IVI++ Sbjct: 234 ----TEKDKKTLVITEIPYSTTTGSVIDSI--LSANDKGKIKIKKIEDNTAAHVEIVIQL 287 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 +V ++ LY+ T +VS N + +P+ +++ DI+ H + ++ + Sbjct: 288 APGISPDVTIDALYAFTSCEVSISPNTCIIKDEKPQFLSVNDILIENSMHTKALLKKELE 347 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 +L + +++ L + + + + N Sbjct: 348 IKLHELQEKIFFSSLLKIFI--------------------QEGMYKNAEYENSVNFEMVV 387 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 E +P + ++D + +T + +K ++ K L D+I Sbjct: 388 EVLNRLFEPFKPGLYREILPEDF-----KKLIDKPMSSITRFDVKKADEQMKALSDEIKV 442 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 + L L E + +++++G R +I L D + V Sbjct: 443 VKNHL---RHLTEYAIAWFQKLKDKYGKGR-----ERKTEIRLFDRVEASKV-------- 486 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 L+ + G +++++F+ + D ++ F G+ KV Sbjct: 487 -----ALANVKLYMNREDGFIGTGLRKDEFVAD---CSDIDELIVFREDGKCIITKVAD- 537 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 T +G + + I ++ A+ +K+ + R Sbjct: 538 --KTFVGKGILHAQVFKKGDERTIYNMIYKDG---------ASGVSYIKRFAV--VGVTR 584 Query: 668 TAGKVAIKLVDGDELIGVDLTSGEDEVMLFS------AEGKVVRFKES--SVRAMGCNTT 719 K G +++ + E + + ++ K ++F + G + Sbjct: 585 DKEYDLTKGSKGSKVLYFT-ANPNGEAEIVTVQLKPHSKLKKLQFDLDFAEIAIKGRGSQ 643 Query: 720 G-------VRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGK 754 G V+ I L +G +S + D + +G GK Sbjct: 644 GNIVSKYPVKKILLKSKGVSTLSGLKIWYDDLLRRLNVDGRGK 686 >UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia RepID=PARC_BORBU Length = 626 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 161/717 (22%), Positives = 303/717 (42%), Gaps = 108/717 (15%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++I LK ++L Y+ VI RA+ V DG KPV RR+++++ + + + K A VV Sbjct: 1 MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAK 129 G+ + KYHPHGD+++Y+ +V +A + + ++ QGNFG++ GD A+A RY E RL Sbjct: 58 GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 +A +++ KE + +YDG P + P KIP +L+ GS GIAVGMA I PHN E Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 ++N + + E I PDFPT I++ Y G GKV +RA+ E Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIET- 216 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 +TI++ E+P+ LI I + +++ ++ +S++ D + ++ + I + + R Sbjct: 217 ----IDEKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAEN-VAIELSLPR 270 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 V+ LY T Q+S +N++ L P + +KD+I H ++++ + Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELELQ 330 Query: 370 LRKARDRAHILEALAVALA-NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 K ++ + + I ++E I + V + + + E Sbjct: 331 KSKILEKIFYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKE--- 387 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 + +L + ++K++ + +K + K L EL Sbjct: 388 -------------------------DVENLLKIPIRKISLFDIDKNSKDIKILNK---EL 419 Query: 489 LRILGSADRLMEVIREELELVREQFGDK--RRTEITANSADINLEDLITQEDVVVTLSHQ 546 I + + ++L+ ++ + R+T+I+ + E V + L+ Sbjct: 420 KSINSNISSIRGYSINFIDLLLAKYSKEHQRKTKISLIKSKNVKEIATKNMKVYLNLAE- 478 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 G + + + +FI A+ +D IL F R Y +K Sbjct: 479 -------------------GFAGTSLFDGEFIGN---ASYYDKILVF--RENSYVLK--N 512 Query: 607 LPEATRGARGRPIVNLLPLEQD-ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 + + T + + + E+I +I+ + VK+ + +F Sbjct: 513 IEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFYY---------VKRFKIDKFIT 563 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 + L + DE + L + V + + V R + + ++ G R Sbjct: 564 DKVYEF----LGENDEFVDFSL--NPEFVEFSTNKDIVKRIEIDNFMVKSRSSIGKR 614 >UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteroidetes RepID=D2QEJ6_9SPHI Length = 904 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 138/560 (24%), Positives = 259/560 (46%), Gaps = 77/560 (13%) Query: 2 SDLAREITPVNIEEEL-----------KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 50 DL E P++ + E+ ++ +LDYA VI+ RA+P V DGLKPV RR+L+ Sbjct: 30 DDLVPEEQPIDTKTEVLHDQTVVSGLYENYFLDYASYVILERAVPAVEDGLKPVQRRILH 89 Query: 51 AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 110 A+ + + + K A V+G + ++HPHGD+++ + +V + Q + +L D QG++G Sbjct: 90 ALKEM---DDGRFNKVANVIGQTM-QFHPHGDASIGEALVNIGQ----KELLFDTQGSWG 141 Query: 111 S-IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 169 GD AAA RY E+RL+K A + + +T ++ +YDG ++ P +P K P LL Sbjct: 142 DVRTGDGAAAPRYIEVRLSKFAQDAI--YNDKTTEWQLSYDGRKREPITLPVKFPLLLAQ 199 Query: 170 GSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI 229 G GIAVG++T I PHN E+I+ + + D+ +S+ PDF T +I+ Sbjct: 200 GVEGIAVGLSTKILPHNFNELIDASINILKDKPVSL--------FPDFQTGGLIDVSN-- 249 Query: 230 EEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRV--- 286 Y G +R RA++E + ++ + + ++PY V ++LI+ I + + ++ Sbjct: 250 ---YNDGHRGGKVRVRAKIE---EVDKKILAIRDVPYGVTTSQLIDSIVKAAELGKIRIK 303 Query: 287 ---EGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPK 343 ++A+ D + KD + I++ ++ +V ++ LY+ T +VS N + +P Sbjct: 304 APSRNVAAVVDNTAKD-VEILVHLQPGVSPDVTIDALYAFTDCEVSISPNACVIIGDKPH 362 Query: 344 IMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP 403 +++ DI+ ++ R + +R + + N I I T Sbjct: 363 FVSVTDILRVNTHQTVHLLQRELEIRRSELMERLLYSSLEKIFIEN--RIYRKIEECET- 419 Query: 404 AEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRL 463 A+LE + L +D L LTE +++ Sbjct: 420 ----------------FEAVLEAIDKALKPHKKLFYRVITQDDLIRLTE--------IKI 455 Query: 464 QKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD--KRRTEI 521 ++++ + K + + L ++AE L + R + +++++G +R+TEI Sbjct: 456 KRISKYDGFKAEELMRRLEQELAETEDNLANITRFA---IAYYKDLQKKYGKGRERKTEI 512 Query: 522 TANSADINLEDLITQEDVVV 541 A + + + V Sbjct: 513 RAFNTIAASVVAAANQKLYV 532 >UniRef50_A4ECR3 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECR3_9ACTN Length = 339 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 131/336 (38%), Positives = 212/336 (63%), Gaps = 1/336 (0%) Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 +VVT++H GYVK P++ Y AQ+RGGKG S +KE+D ID + +A+TH+++L FSS+G+ Sbjct: 1 MVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGK 60 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 VY +KV++LP TR ARG IVNLLP E+ E+I +++ EF + AT +G VKKT Sbjct: 61 VYRLKVHELPVGTRQARGTAIVNLLPFEEGEKIASVISCREFPANEYLMFATKSGMVKKT 120 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 V++ ++R R G +AI L D D L+ V D+++L + GK + F E VRA G +T Sbjct: 121 VMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRATGRDT 180 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 +GVRGI + +G V+ + V G+G + T+ GYGKRT VA+YP ++R +GV +I++TE Sbjct: 181 SGVRGIGMKDGVSVLGMEVTNGNGDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTE 240 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 R G + V ++ ++T+ T++R + EIS GR TQGV ++ +++ + + R Sbjct: 241 RKGNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTVDDNDRICAVAR 300 Query: 839 VAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEE 874 + ++ + + + +AA+ ++ D +D PE+ Sbjct: 301 MTAAKEKPEGEGAE-AAADTEETPVDLGDGNDMPED 335 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 11/193 (5%) Query: 507 ELVREQFGDKRRTEITANSADINLEDL----ITQEDVVVTLSHQGYVKYQPLSEYEAQRR 562 + V + RR + A + + L + + D ++ + G + A R Sbjct: 119 KTVMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRATGR 178 Query: 563 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNL 622 G +K+ + + V N + + + RG V PE RG +G + + Sbjct: 179 DTSGVRGIGMKDGVSVLGMEVTNGNGDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQM 238 Query: 623 LPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA--GKVAIKLVDGD 680 ER + + ++F+ T TV + E ++ A G + + D D Sbjct: 239 T-----ERKGNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTVDDND 293 Query: 681 ELIGVDLTSGEDE 693 + V + E Sbjct: 294 RICAVARMTAAKE 306 >UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1N9_9BACT Length = 745 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 158/728 (21%), Positives = 302/728 (41%), Gaps = 128/728 (17%) Query: 18 KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77 ++ +L+YA VI+ RA+P + DGLKPV RRVL+ + + + + K A VVG + K Sbjct: 77 RNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDM---DDGRFHKVANVVGATM-KL 132 Query: 78 HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMRYTEIRLAKIAHELMA 136 HPHGD+++ +V + Q R L++ QGN+G ++ GD+AAA RY E RL A +++ Sbjct: 133 HPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARLTPFARDVL- 187 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 +T + +YDG K P +P K P +L+ G+ GIAVG++T I PHN ++ + Sbjct: 188 -FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNFNDLCRAAIN 246 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEVEVDAKT 254 ++ + I PDFPT G Y G GKV +RAR E + Sbjct: 247 HLQGKTFRIL--------PDFPTGG-----TGDFTDYNDGERGGKVKVRARIE-----EH 288 Query: 255 GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGE 314 + + + E+PY V LIE I + +++ I + D++ + I++ + + + Sbjct: 289 SKSVLCITELPYGVTTESLIESILAANAKGKIK-IKHV-DDNTASKVEILVHLPPGSQPD 346 Query: 315 VVLNNLYSQTQLQVSFGINMVALH------HGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 V+ LY T QV + +P+ M ++DI+ A V +E++ + Sbjct: 347 KVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGVRDILKASVDATKELLKQELEI 406 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 +L + + H + + + I I + T + Sbjct: 407 KLGELEQQWHWDSLERIFIE--ERIYRRIEKSQTWESVLEEIRTGLKPF----------- 453 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 + + +TE+ + ++R+++++ + + K++ + I E Sbjct: 454 --------------IGNLRREVTEEDIVRLTEIRIKRISAYNRFQADEALKKIEEAIKET 499 Query: 489 LRILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQ 546 L + L+ + E ++E++G KRRT A I+ VV+ + + Sbjct: 500 KHHLKN---LVAYAVDWFERLQEKYGKGVKRRTT-YDEIAQIDA-------SAVVSANQR 548 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 YV + G ++ +F+ + D +L G S+KV + Sbjct: 549 LYVNRED------------GFIGLNWRQHEFVT---ECSILDSVLTIMRDG---SLKVTK 590 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG-----TVKKTVLT 661 + + + GR +I I + + M +G KK + Sbjct: 591 VAD--KVFMGR------------KIIHIGLWPKDGDMNFYTMVYQDGETGKAFAKKFQIG 636 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEV---MLFSAEGKV------VRFKESSVR 712 +R + ++ + ++I + ++ E + + S +G+ + F +++ Sbjct: 637 GLSRDK---LYSLVKSEDSKIIFLHISPSEQAMPKTLHVSVDGRSGARVRELDFDLTALP 693 Query: 713 AMGCNTTG 720 + G Sbjct: 694 VSTRTSKG 701 >UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=Deltaproteobacteria RepID=Q1NV80_9DELT Length = 711 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 152/601 (25%), Positives = 271/601 (45%), Gaps = 88/601 (14%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 + ++LDY VI RA+PD+ DGLKPV RR+L ++ + + + K A VVG Sbjct: 57 ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNM---DDGRFHKVANVVG 113 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKI 130 + + K HPHGD++++ +V +A + L+D QGNFG++ GD A+A RY E RL+ + Sbjct: 114 ETM-KLHPHGDASIFSALVNLA----NKGYLIDRQGNFGNVHTGDGASAPRYIECRLSPL 168 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E M KE +F+D+YDG K P +P ++P LL+ G+ GIAVGMAT I PHN E+ Sbjct: 169 ARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 226 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 + + +E + PDFP +++ Y G G++ RAR E Sbjct: 227 LTASKQILREEPFEL--------FPDFPQGGLLD-----ASGYEDGNGRLRCRARIETRD 273 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 D +TI++ +IPY LIE + + + + + I ++ D + +D + I I++ R Sbjct: 274 D-----KTIVIRDIPYGTTTQSLIESVEKAARAGKFK-ILSIDDYTAED-VEIEIKLARG 326 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 E + LY+ T ++ N + P IM + +++ R+++ + +L Sbjct: 327 FKAEETIKALYAFTDCEIPISPNFTVIREQTPAIMTVSEVLRENTARLRQLLKKELELDL 386 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 + R++ + + + + + I P+ A L L AA L R Sbjct: 387 ARLREKLQARLLEQIFIE--ERLYKQIEECPSLA---VVLTTIDKALKPFAAELVRP--- 438 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 ++ + + +L++R+++++ + E+ E K + I + + Sbjct: 439 -------------------VSREDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVEK 479 Query: 491 ILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQGY 548 L L L+ + +++G RRTE+T + ++ + + G+ Sbjct: 480 NLAD---LTAYAIRFLDDLLKRYGQQYPRRTELT-SFKEVQASQVALSNLSLAYDPESGF 535 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 + Q + A+ R L + +D IL S G KV +P Sbjct: 536 LGTQVKTS--AENR-------------------LACSEYDKILLISRSG---WYKVVAVP 571 Query: 609 E 609 + Sbjct: 572 D 572 >UniRef50_Q5CB96 ATP-dependent Clp protease, ATPase subunit n=1 Tax=Thermotoga sp. KOL6 RepID=Q5CB96_9THEM Length = 652 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 130/365 (35%), Positives = 216/365 (59%), Gaps = 7/365 (1%) Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 +L+ +I+E+ IL ++ E++++E + ++E++GD RRT+IT ++E+LI +ED+ Sbjct: 291 KLVKKISEVKEILEKDVKVKEIMKKEFKYLKERYGDPRRTKITDEELRYDMEELIAEEDI 350 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V+TLSH+GY+K PLS Y +QRRGGKG + +++ E+D ++ ++V L ++ G+ Sbjct: 351 VITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNLGKA 410 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 Y +K YQ+ R RGR I L LE+ E++ A+ P+ +G + + T +G +K+T Sbjct: 411 YVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNG--KGKDLVIVTKHGKIKRTA 468 Query: 660 LTEFNR-LRTAGKVAIKLVDGDELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMGCN 717 L EF G AI++ GDE+I + E +++ + G V+RF S VR MG N Sbjct: 469 LEEFENATSNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGRN 528 Query: 718 TTGVRGIRLGEGDKVVSLIVP--RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 GV+ I+L D+VVS+ V +G ILT T+ G+GKRT V Y + R G+ +I Sbjct: 529 AAGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGFGKRTPVELYRIQKRGGTGLRNIS 588 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 ++ G VV V ++I+++T G ++R VS+I I+GR T+GV LI D+++ Sbjct: 589 DVKKTGYVVAVRYVRGDEEIVVVTKNGMMIRIPVSDIGIIGRITKGVKLIELG-DDSISK 647 Query: 836 LQRVA 840 + V Sbjct: 648 VAVVK 652 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 7/220 (3%) Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI--KLVDGDELIGVDLTSGEDEVMLFSA 699 E V + G +K T L+ + R GK KL + DE+ V +T + + Sbjct: 347 EEDIVITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITN 406 Query: 700 EGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRGDGAILT-ATQNGYGKR 755 GK K + G NT G + L E +KVV+L G G L T++G KR Sbjct: 407 LGKAYVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNGKGKDLVIVTKHGKIKR 466 Query: 756 TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV 815 TA+ E+ + + +GV +I++ + ++ V + +++ T G ++R VS++ + Sbjct: 467 TALEEFENAT-SNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRM 525 Query: 816 GRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 GRN GV I+ D+ VV + V + E L + Sbjct: 526 GRNAAGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGF 565 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 109/522 (20%), Positives = 199/522 (38%), Gaps = 53/522 (10%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + + + + ++ S R++P + DG KP R+VL+ +K K A++ Sbjct: 714 LTYNDFINKELILFSNSDN-ERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLA 769 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG+ A+ TIV +AQ F S L+ G FG+ G AA+ RY Sbjct: 770 GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 828 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ +A L ++ + F+ + D P+ IP +L+NG+ GI G A +P Sbjct: 829 TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 887 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 ++ E++N +D D P P P Y+ +G + Sbjct: 888 YDAREIVNNVRRMLDGLD----------PHPMLP-------------NYKNFKGTIQELG 924 Query: 245 RAEVEVDAKT---GRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDK 298 + + V + R T+ + E+P + E++ E + +K IS ++ Sbjct: 925 QNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTD 984 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFV 355 ++ V+++ + + + L+ +LQ + N + L K ++DI+ F Sbjct: 985 TTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFF 1044 Query: 356 RHRREVVTRRTIFELRKA-RDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 R R + + + + L I I + + + LV Sbjct: 1045 DLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITI--ENRSKKDLIQMLVQRG 1102 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 ++ V A E A E + IL++ L LT + E+L Sbjct: 1103 YESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEEL 1162 Query: 475 LDEYKELLDQIAELLRILGSADRLME----VIREELELVREQ 512 + + ++ +L R S L + EEL+ V Q Sbjct: 1163 IKQRDAKGREVNDLKR--KSPSDLWKEDLAAFVEELDKVESQ 1202 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 117/526 (22%), Positives = 208/526 (39%), Gaps = 66/526 (12%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 +L E+ + I + + + ++MS V R++P + DGLKP R++LY K Sbjct: 740 DNLDPEMNEIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKL---K 795 Query: 62 AYKKSARVVGDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++ V + YH HG+ ++ TI+ MAQ F S L+ G FGS G Sbjct: 796 NEIKVAQLAAYVADVSSYH-HGEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRATGGK 854 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 AAA RY L +I + + + ++++ + D + P +P +LVNG+ GI Sbjct: 855 DAAAARYIFTELNEITRTIFNEADDPLLNYLQD-DESTVEPQWYLPVLPMILVNGADGIG 913 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +TNIP +N +++ + E P G G E + Sbjct: 914 TGWSTNIPSYNPLDIVANLRRLMRGE-------------PMEEMNPWYKGWYGDIE--KV 958 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK-IAELVKEKRVEGISALRD 294 G K I R E + TI + E+P + + E +A L EK V+ I + + Sbjct: 959 GPQKFKISGRIE-----QIDDNTIEISEVPVKTWTNTVKEFLLAGLGNEKTVQWIKDM-E 1012 Query: 295 ESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH-HGQ-PKIMNLKDII 351 E +R V+++ + + + L + +L + + NMVA HG+ K +++ DI+ Sbjct: 1013 EQHTTSIRFVVKLSDAEMAKALSVGLLEKFKLVSTISLANMVAFDPHGRIKKYLDVLDIV 1072 Query: 352 AAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANI------------DPIIELIRH 399 F R E +R L + + ++ A + I +I ++ Sbjct: 1073 KDFYFVRLEYYEKRKNHMLEILQHKHSMISEQARFIKMIIDKQLSVANKKKKELIGILEA 1132 Query: 400 APTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA---- 455 K + + + D A ++ G + L ++ Sbjct: 1133 NKFLKFTKDGRPIEQVVVDDDDDDEDEDVIDGAGGAGVDGIAGGEADISQLNLKEVDENP 1192 Query: 456 -------------QAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 IL + + LT + KLL E ++ +Q+ +L Sbjct: 1193 TNEHRPETVSSSYDYILGMTIWSLTHERYVKLLAEKEKYQNQLQDL 1238 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 112/524 (21%), Positives = 200/524 (38%), Gaps = 54/524 (10%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + + + + ++ S R++P + DGLKP R+VL+ +K K A++ Sbjct: 693 LTYNDFINKELILFSNSDN-ERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG+ ++ TI+ +AQ F S L+ G FG+ G +A+ RY Sbjct: 749 GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ +A L + T+ F+ + D P+ IP +L+NG+ GI G + IP Sbjct: 808 TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 ++ E++N +D E+ P P P+ Y+ +G + A Sbjct: 867 FDVREIVNNIRRLMDGEE----------PLPMLPS-------------YKNFKGTIEELA 903 Query: 245 RAEVEVDAKT---GRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDK 298 + + + TI + E+P + E++ E + EK I+ R+ Sbjct: 904 PNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 963 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFV 355 ++ V+++ + + E L+ +LQ S N + L K + DI+ F Sbjct: 964 TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1023 Query: 356 RHRREVVTRRTIFELRKA-RDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 R + R + L + A + L ID I +I + P K + Sbjct: 1024 ELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKI-IIENKPKKELIKVLIQRGY 1082 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTE--QQAQAILDLRLQKLTGLEHE 472 A + + +T+ +LD+ L LT + + Sbjct: 1083 DSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTFNYLLDMPLWYLTKEKKD 1142 Query: 473 KLLDEYKELLDQIAELLRILGSADRLME----VIREELELVREQ 512 +L E ++ L R S L + EELE V + Sbjct: 1143 ELCRLRNEKEQELDTLKR--KSPSDLWKEDLATFIEELEAVEAK 1184 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 104/509 (20%), Positives = 199/509 (39%), Gaps = 38/509 (7%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L ++ + + + ++M+ + R++P + DGLKP R+VL+ + Sbjct: 785 LDHSTEKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLIHD--- 840 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 +K + G V YH HG+ ++ TIV +AQ F S ++ GNFGS G A Sbjct: 841 QKVVELAGYVSKEAAYH-HGEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGSDA 899 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY RL+ +A ++ L++ ++F + DG P V +P +LVNG+ GI G Sbjct: 900 ASARYIHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPILPMVLVNGADGIGTG 958 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T+IP ++ +++ + D S +G + P P G +G E G Sbjct: 959 WSTSIPNYHPLDIVENLKRRM-GRDSSGDGEEK----PFEPMTPWFRGWKGTPE--PDGP 1011 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK-EKRVEGISALRDES 296 K EV + V E+P ++ K+ E+++ +K I ++ + Sbjct: 1012 NKFKFNGIVEV---NPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKGPSWIKDYKEYN 1068 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALH--HGQPKIMNLKDIIAA 353 D + +I ++ + + + L + +L + N+VA K N ++I+ Sbjct: 1069 DHQTVHFIIALEEKQMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIYKYENPQEIMEE 1128 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP---IIELIRHAPTPAEAKTAL 410 + +R + R L+ L+ ++ I I+ + + E + Sbjct: 1129 YYHYRLNLYGERKKHWLKVYHADYRKLQNQYRFISEIIENKLIVAKKKKSVLVQELRERK 1188 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 + + + A E + Y +L + + LT Sbjct: 1189 YEAFPPKSDGRNVKSPDEELGAAENEDEEDAVGGARDY-------DYLLSMPIWSLTFER 1241 Query: 471 HEKLLDEYKELLDQIAELLRILGSADRLM 499 +KL + + EL + S L Sbjct: 1242 LDKLKQQIAAKKAEYDELDAL--SEKDLW 1268 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 105/508 (20%), Positives = 201/508 (39%), Gaps = 45/508 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + + + + + ++M+ + R++P V DGLKP R+VLY K Sbjct: 714 LDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNL---KKD 769 Query: 64 KKSARVVGDVIGKY-HPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAA 118 K + G V G + HG+ ++ TIV +AQ F S ++ GNFGS G A Sbjct: 770 MKVVELAGHVSGTTAYQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCA 829 Query: 119 AMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178 + RY RL A + + + + + ++ DG + +V +P +L+NG+ GI G Sbjct: 830 SARYIYTRLWPFARRVFHNHDDPLLTYNED-DGAKIEQEVYVPVVPMILINGADGIGTGW 888 Query: 179 ATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG 238 +++ P +N +++ +D E P P G G E G+ Sbjct: 889 SSSTPNYNPEDIVENLKRMMDGE-------------PLKPMQPWFRGFTG--EVTAVGQD 933 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK-EKRVEGISALRDESD 297 + + +TG + + + E+P + +K+ +++K EK I +D + Sbjct: 934 RFKFSG-----IIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 988 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALHHGQ-PKIMNLKDIIAAFV 355 + VI++ + + L + +L + N+VA + K +++DI+ F Sbjct: 989 HTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPERITKYASVEDIMKEFY 1048 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANI---DPIIELIRHAPTPAEAKTALVA 412 R + RR ++L + + L A + I +I + A AE K Sbjct: 1049 AVRLKYYERRKQYQLSEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVLVAELKEKDFK 1108 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 ++ E + + V Y +L + + LT E Sbjct: 1109 PFPKVKEAVKAGETEPVVEEEEDSESGDTEVLSNSY-------DYLLGMPIWSLTQERVE 1161 Query: 473 KLLDEYKELLDQIAELLRILGSADRLME 500 KL + + +I L+++ S + + + Sbjct: 1162 KLRRQIGDKELEIDTLIKL--SKEDIWK 1187 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 100/519 (19%), Positives = 200/519 (38%), Gaps = 50/519 (9%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + ++ + + + Y+ R++P++ DG KP R+VLY + Sbjct: 710 VDHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNE 765 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++VG + YH HG+S++ TI+ MAQ F S ++ G FGS G A Sbjct: 766 CKVAQLVGYIAEHSAYHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 825 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 +A RY +LA + + + + ++ N +G + P IP +LVNG GI G Sbjct: 826 SAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTG 884 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 ++ IP +N ++I+ YI+ E L+ +P Y+ + Sbjct: 885 YSSFIPNYNYKDIIDNIKRYINKEP-----LIPMVPW------------------YKDFK 921 Query: 238 GKVYIRARAEVEVDA---KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRD 294 G++ + E K +T+ + E+P + E + EL+ +++ + I D Sbjct: 922 GRIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYID 981 Query: 295 ESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALHHGQP--KIMNLKDII 351 S + + I++ + + L +L+ + NM + DI+ Sbjct: 982 NSSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDIL 1041 Query: 352 AAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANI--DPIIELIRHAPTPAEAKTA 409 F R + R + + K I+ + I + +I + + Sbjct: 1042 KEFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELI--VNKKKKKVLVEEL 1099 Query: 410 LVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL 469 ++ + + + + + + + +T + +L + + LT Sbjct: 1100 YRKGYDPYKDINKIKKEEIFEQELLDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLE 1159 Query: 470 EHEKLLDEYKELLDQIAELLRI------LGSADRLMEVI 502 + E LL + KE ++ L I L +++ E I Sbjct: 1160 KVEDLLTQLKEKERELEILRNITVETMWLKDIEKVEEAI 1198 >UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringiensis RepID=C3GSY0_BACTU Length = 745 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 171/724 (23%), Positives = 300/724 (41%), Gaps = 105/724 (14%) Query: 15 EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 74 + L Y+DYA V+ RAL D+RDGLKPV R LY M K KS + VG + Sbjct: 46 QYLVRGYIDYAREVLTNRALEDIRDGLKPVQRYALYWMFKEK---AKDMIKSEQ-VGAGV 101 Query: 75 GKYHPHGDSAVYDTIVRMAQPFSLRY-MLVDGQGNFGS-IDGDSAAAMRYTEIRLAKIAH 132 KYHPH + Y+++ +M + Y L+ G+G G S AA RYT ++ + A Sbjct: 102 LKYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 E+ ++ +D V N+D TE++P+V+P +P +L+ + GIAVG +T P +V N Sbjct: 162 EMFTAMDG--IDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEVD 251 YI +G + PDF T I + +E+ +TG+G R + + Sbjct: 220 LVREYIR------DGKCSTMIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFI--- 270 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGIS--ALRDESDKDGMRIVIEVKR 309 + I+V E+P V +EKI + +++ ++GI+ D + KDG I + Sbjct: 271 ---DGKNIVVTEVPQGVT----VEKIMKEIEKAEIQGITPNGYSDLTGKDGCYFEITCRA 323 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 + VL LY++T LQ F N++A+ + I + II +V+ RR+V+TR+T + Sbjct: 324 KNRVQEVLMELYTKTSLQKKFNSNLLAVESKKLVITGVWGIIDRWVKWRRKVLTRQTRLD 383 Query: 370 LRKARDRAHILEALAVALAN---IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 L K + A + LA D I+EL + +A + +V Sbjct: 384 LAKLVESAKYTKGFIDLLAIEGARDEIVELTTK-KSDNDAIKRIQEYIQCERDV------ 436 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 A+ I+ RL + K +++Y +IA Sbjct: 437 ----------------------------AEWIIKRRLNQFRN--DNKYINQYANYQIEIA 466 Query: 487 ELLRILGSADRLMEVIREELEL----VREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 +L + L + + +I E+++ V ++ +RRTEIT ++ + ++++ + Sbjct: 467 KLEKYLEN---IDTLILEDMDRFDLLVSKKH--ERRTEITNKVYEVET---VKEDEIEIP 518 Query: 543 LSHQGY-VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 +S Y +K L + + G+G + T+ I+ SS G ++ Sbjct: 519 VSECYYQIKDGFLRKLHVKPTSGEGI-------------IFEGYTNSTIIALSSEGEIFR 565 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + + T G I L + + L + K + +G V Sbjct: 566 IYGNDINYLTGNDIGTYIPTYSGLANAQHVQ--LIWATVCDEKKYVLTYEDGFVGFLDTA 623 Query: 662 EF------NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 EF ++ G A D+L V + +++ + + S++ Sbjct: 624 EFLVGAIKSKYLRNGISA----HADKLTDVREYQEDSVIVVETHDKLYACAHLDSIKMKS 679 Query: 716 CNTT 719 Sbjct: 680 RTAR 683 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 328 bits (842), Expect = 5e-88, Method: Composition-based stats. Identities = 113/498 (22%), Positives = 207/498 (41%), Gaps = 50/498 (10%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 ++ + E + + ++M+ + R++P V DG KP R+VL+ +A K Sbjct: 737 DVDEMGYTEFVNKELILFSMADNI-RSIPSVMDGFKPSQRKVLFCCFKRNL---RAELKV 792 Query: 67 ARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAM 120 A++ G V YH HG++++ IV MAQ F S L+ G FG+ + G AA+ Sbjct: 793 AQLAGYVSEHSAYH-HGEASLQGCIVNMAQDFVGSNNIHLLSPIGQFGTRLMGGKDAASA 851 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RY L ++ + L+ + + ++ + DG P+ IP +LVNGS GI G ++ Sbjct: 852 RYIFTNLEQLTRLIYHPLDNDCLKYL-SEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWSS 910 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG--IEEAYRTG-- 236 ++P +N ++I G I+ E+I+ P G G +E+A G Sbjct: 911 SVPNYNPLDIIKGLRQMINGEEIA-------------PLTPWYRGFTGHIVEKANSRGTD 957 Query: 237 RGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 G ++ EV D+ T++V E+P + + + L+ I ++ Sbjct: 958 TGNYIVQGLYEVTDDS-----TLVVSELPVKSWTQTYKQFLEGLLDAGT---IKDFKENH 1009 Query: 297 DKDGMRIVIEVKRDAVGEVVLN--NLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDII 351 + I ++ A+ +V + + +L+ S + + L K N K+I+ Sbjct: 1010 TDVKVLFTITMEPKALSDVTKAPGGIVKKFKLESSLSTSNMHLFDAAGHIKKYENPKEIM 1069 Query: 352 AAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALV 411 A F R E RR L+K +D+ +L A + + +L+ + E L+ Sbjct: 1070 AEFYGIRLEYYGRRKKAMLQKLQDQIKLLSNKARFVLAVVEG-KLVVNNRKKQELLEELM 1128 Query: 412 ANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEH 471 A + + +D+ E EP Y +L +++ LT Sbjct: 1129 AEGYDQIVSKTKKKPDNEDSNESEDEEPNVADVSRGY-------DYLLSMKIWSLTKERV 1181 Query: 472 EKLLDEYKELLDQIAELL 489 +KL E +E + + L Sbjct: 1182 DKLRAELQEREHEYSVLE 1199 >UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomatis RepID=C4PNH1_CHLTZ Length = 490 Score = 328 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 128/522 (24%), Positives = 234/522 (44%), Gaps = 56/522 (10%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 N+ + K+ + YA VI+ RA+P V DGLKPV RR+L+ + + + K A + G Sbjct: 3 NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKI 130 + HPHGD+ + + +V +A + L++ QGNFG+ + GD AA RY E RL+ + Sbjct: 60 RTM-ALHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ + + F D+YDG E+ PD++ KIP LL++G GIAVGM T I PHN ++ Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 + +A ++D+ S+ PDFP ++ Y+ G G + +RA ++ Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMDASD-----YQDGLGSIVLRATIDI-- 217 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 +T+++ EI LI I K ++ I +++D S D I I++ + Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFST-DLPHIEIKLPKG 272 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 + +L LY+ T+ QV A++ G+P + +I+ + + + + + L Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLI-L 331 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 + R + L + + +R + + + + Sbjct: 332 EDSLSR-ELYHKTLEYLFIKHKLYDTVRS--------------------MLSKRKTSPSS 370 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQA-ILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 +A + ++QA A + L ++K+ + E L + + + Sbjct: 371 SAIHNAVLEALTPFLDTLPAPDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQ 430 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE 531 + L + + ++L Q G R+T+I A D+ E Sbjct: 431 KDLSQLKKYTVLYIKKLLETYRQLGH-RKTKI-AKFDDLPTE 470 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 109/540 (20%), Positives = 207/540 (38%), Gaps = 74/540 (13%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++ + + + ++ S R++P + DGLKP R+VL+ +K K A++ Sbjct: 828 LSYNDFINKELILFSNSDN-ERSIPSLVDGLKPGQRKVLFTCLKRN---DKREVKVAQLA 883 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG+ A+ TIV +AQ F S ++ G FG+ G AA+ RY Sbjct: 884 GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRYIF 942 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ +A L ++ + F+ + D + P+ IP +LVNG+ GI G A IP Sbjct: 943 TMLSPLAKLLFPAVDSNLLKFLYD-DNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPN 1001 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +++ E++N + S + ++ +P G +G+ + G+ + + Sbjct: 1002 YDVREIVNNINRML-----SRQEPLQMLP--------SYKGFKGVI--HELGQNQYLVSG 1046 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGM 301 V + T+ + E+P + E + E + +K IS ++ + Sbjct: 1047 EVSV-----IDKNTVEITELPVRTWTQAYKESVLEPMLQGSDKTPALISDYKEYHTDTTV 1101 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGIN-MVALHHGQP------------KIMNLK 348 + ++ + + + + L+ +LQ S N MV +P + +++ Sbjct: 1102 KFLVRMSEEKLAQAEAAGLHKVFKLQSSLTCNSMVTACFHRPEHVLFDHMGCLKRYESVQ 1161 Query: 349 DIIAAFVRHRREVVTRRTIFELRKA-RDRAHILEALAVALANIDPIIELIRHAP------ 401 DI+ F R R + + + A + L I+ I + + Sbjct: 1162 DILKEFFELRLHYYKLRRDWLVGSLGAEAAKLSNQARFVLEKIEGKISIENKSKRELIRM 1221 Query: 402 --------TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ 453 P A T + +A ++ + Sbjct: 1222 LVQKGFESDPVAAWTRAQEKELRRFQSKREPRQAQEEDEGNDSDSSLDSGSSSGPNFN-- 1279 Query: 454 QAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLME----VIREELELV 509 IL++ L LT + E+LL + ++ EL R S + L + V EELE + Sbjct: 1280 ---YILNMPLWCLTKEKVEELLKQRDLKRGELNELQR--KSPEDLWKEDLAVFVEELEKL 1334 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 324 bits (831), Expect = 8e-87, Method: Composition-based stats. Identities = 104/503 (20%), Positives = 192/503 (38%), Gaps = 47/503 (9%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + I + + + + +++ R++P V DG KP R+VL+ Sbjct: 651 TTVDHSIKKLRYTDFINKELIQFSIY-DTERSIPSVVDGWKPGQRKVLFGCLKRNLV--- 706 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++ G V YH HG++++ TI+ MAQ F S +++ G FGS G Sbjct: 707 GECKVAQLTGYVAEHSAYH-HGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGGK 765 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 A+A RY +L I + + + +++ N +G P IP +LVNGS GI Sbjct: 766 DASAARYIFTKLNPITRLIFVEEDDNILEYQ-NEEGQTIEPMYYIPTIPMVLVNGSEGIG 824 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G ++ IP +N ++I+ Y+++ D+ P P G E Sbjct: 825 TGFSSQIPNYNPLDIIDNLKRYLNNVDMK----------PMVPWYHKFTG-----EIEPN 869 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARL---IEKIAELVKEKRVEGISAL 292 +G + + + + E+P + +E + + V + I Sbjct: 870 DKGGFDCLGNYQWLDENGL----LEITELPIRKWTHDYRVFLESLEQGV-NGKEPLILGF 924 Query: 293 RDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALHHGQ--PKIMNLKD 349 D S + + + V + + EV+ + +L+ S NM + + N + Sbjct: 925 VDNSTHESVHFTLNVNPECIEEVINEGVDKVFKLRTSIATTNMTLFDANKKLKRYSNELE 984 Query: 350 IIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP--AEAK 407 II F R +R + + + L ++N I ++ + +AK Sbjct: 985 IIRDFAAVRLATYEKRKTYLINNLK-------LLLRRISNQVRFIHMVVNEELVLFKKAK 1037 Query: 408 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT 467 LVA LG + G + R G +L++ L LT Sbjct: 1038 ATLVAELRDLGFDSNTDILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLWSLT 1097 Query: 468 GLEHEKLLDEYKELLDQIAELLR 490 + +KL +E+ + +Q+ LL Sbjct: 1098 LEQVQKLNEEHAQKENQLRILLE 1120 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 109/515 (21%), Positives = 212/515 (41%), Gaps = 46/515 (8%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + ++ + ++++ S R++P + DGLKP R++L+A K K A++ Sbjct: 652 LTYKDFVNKELINFSNSDN-ARSIPSLCDGLKPGQRKILFACFKRNL---KNEIKVAQLS 707 Query: 71 GDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTE 124 G V YH HG+ ++ TIV MAQ F + + G FGS + G AA+ RY Sbjct: 708 GYVAEHSAYH-HGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNMGGKEAASARYIH 766 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L KI + + + + ++++ +G + P IP L+NG+ GI G +T+IP Sbjct: 767 TCLNKITRCVFPEPDDHILYYLED-EGQQVEPIYYLPIIPTALLNGADGIGTGWSTSIPC 825 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +N E+++ SIE M +P D G G E + ++ + Sbjct: 826 YNPRELVD-----------SIEKRMMGVPFTDL--LPWYKGFTG--EISNNEKSQITVSG 870 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK--EKRVEGISALRDESDKDGMR 302 + + TI + E+P + + E ++ + + I +++ + + Sbjct: 871 KYHL-----VNETTIEITELPIKKWIRDYKNFLEEKLESTKDKDPEIEDIKEYHAGNRVH 925 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFG-INMVALHH--GQPKIMNLKDIIAAFVRHRR 359 V+++ + +V + +LQ + NMV +H + N+ +I+ F R Sbjct: 926 FVVKMSEKQMEKVQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICEIMEEFYEVRL 985 Query: 360 EVVTRRTIFELRKARDRAHILEALAVA-LANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 RR + + K IL LA I+ I +R+A K V Q+ Sbjct: 986 NAYKRRKEYLVSKIERDLEILSNKKRFILAVINESIR-VRNAKRKDLIKELSVQGYVQMK 1044 Query: 419 NVAAMLERAGDDAARPEWLE--PEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 ++ + E + E + ++ +L L + LT + E++ Sbjct: 1045 DMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLPMWSLTYEKVEEIKQ 1104 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVRE 511 E K + EL +++ ++++ +E+L+ E Sbjct: 1105 EQKN---KQDELDKLVA--TEVIDIWKEDLKNFIE 1134 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 112/509 (22%), Positives = 198/509 (38%), Gaps = 48/509 (9%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L I + I + + + ++M+ + R++P V DGLKP R+V+++ K Sbjct: 644 LDHRIRNIPISDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVIFSCFKRKL---KTE 699 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSA 117 K ++ G V YH HGD A+ TIV +AQ F S L+ G FGS + G A Sbjct: 700 IKVHQLQGYVSEHSAYH-HGDQALTMTIVGLAQDFCGSNNVNLLMPNGQFGSRSMGGKDA 758 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY + +I + ++ ++++++ DG P+ +P +L+NG+ GI G Sbjct: 759 ASARYIFTAVPRITRLMFHADDEPLLNYLED-DGQSIEPEWYAPVVPQVLLNGAEGIGTG 817 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T +P +N EV++ + E+ P G G E R Sbjct: 818 WSTFVPNYNPREVVDNLRRRMAGEEYV-------------PMNPWYRGFVGGIEPAGPER 864 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK--EKRVEGISALRDE 295 +V AR + T + E+P +V E + E V +K + ++ Sbjct: 865 FRVTGIAR-------QLDERTWEITELPVRVWTMTYKEWLEERVVGSDKTPAVLREYKEY 917 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH---GQPKIMNLKDIIA 352 + V+E+ + E+ + +L + + L + K ++I+ Sbjct: 918 HTDTSVHFVVELNPRGMEEIERVGPDTFFKLSTMLSTSNMVLFNPEGKIKKYATPQEILE 977 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 F R RR + + + L A ++ I + R + K A+V Sbjct: 978 DFYFVRLGFYQRRKEHLVDQLKLVYDRLSNQARFVSMI-----IARELSVSNKKKAAIVE 1032 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 QL A A + E +E + + T+ +L + + LT E Sbjct: 1033 ELRQLKFQAFPKVEAKAKSVTEEAVEDQEEPDEPANSNTDY--DYLLSMAIYSLTQERVE 1090 Query: 473 KLLDEYKELLDQIAELLRILG-SADRLME 500 +LL E EL +LG S L + Sbjct: 1091 RLLKERDHTE---TELKILLGRSPQNLWD 1116 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 103/494 (20%), Positives = 198/494 (40%), Gaps = 43/494 (8%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 V ++ + + ++ + ++ R++P V DG KP R+VL++ + K A++ Sbjct: 703 DVRYDDFINKELILFSRADLM-RSIPSVVDGFKPSQRKVLFSCFKRKLKSD---IKVAQL 758 Query: 70 VGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYT 123 G V YH HG++++ TIV +AQ F S L+ G FG+ G A+ RY Sbjct: 759 SGYVSEHSAYH-HGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYI 817 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RLA I + + + +D++D DG P+ +P +LVNG+ GI G +T+IP Sbjct: 818 FTRLAPICRVIFPECDDALLDYLDE-DGQVIEPEHYLPILPLVLVNGADGIGTGWSTSIP 876 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 N +++ +DDE M P G IEE G + I Sbjct: 877 NFNPRDIVANIRRILDDE---CTERMH-------PWYRNFKGT--IEEEIVKGEIRYNIT 924 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRV---EGISALRDESDKDG 300 + E+ T+++ E+P + + + ++ K I+ ++ Sbjct: 925 GKYEI-----VDETTLVITELPLRSWTTDYKDFLENMLSPKEKNAQPFITDYKEHHTDTT 979 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHH--GQPKIMNLKDIIAAFVRH 357 + ++ + + + + + + + +L NM A G K + + I+ AFV Sbjct: 980 VHFIVTMTPENMAKAQKDGIEKKFKLCAKVSTSNMHAFDEKGGITKYSSPEAIMEAFVPL 1039 Query: 358 RREVVTRRTIFELRKAR---DRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 R + RR +R+A R +A+ + + I + + E + A Sbjct: 1040 RLDAYARRRAMLIRQAEFELKRMSNKVRFILAVVDGEMTIGRKKKSVLIEELEAAGYDKM 1099 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 + AA + ++ + E +L + L LT + ++L Sbjct: 1100 PKTAKAAAAADAEPAESGLSDISEEGAPAPADGASY-----DYLLSMPLWNLTQEKVDEL 1154 Query: 475 LDEYKELLDQIAEL 488 ++E + ++ EL Sbjct: 1155 VEEQRVKTAEVEEL 1168 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 111/497 (22%), Positives = 188/497 (37%), Gaps = 43/497 (8%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++ + + + ++ R++P + DG KP R+VL+A K K A++ Sbjct: 775 LSYSDFVNKELILFSRY-DTERSIPQLVDGWKPGQRKVLFACIKKNM---KHELKVAQLA 830 Query: 71 GDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V YH HG++++ TIV MAQ F S ++ G FGS G A+A RY Sbjct: 831 GYVSEVSAYH-HGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYIF 889 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLA + + + +++ +G P + IP +L+NGS GI G ++ +P Sbjct: 890 TRLAFYTRLVFHEADDPILEYEYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVPN 948 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +N +VI YID E++ G RG E G G Sbjct: 949 YNPRDVIENLRRYIDGEEMQ-------------RMTPWYRGFRGRIEENAAGTG------ 989 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV--KEKRVEGISALRDESDKDGMR 302 + + + G ++ + E+P + E + E + EKR I+ RD S + + Sbjct: 990 FETIGLVRRCGEDSYEITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIH 1049 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH--GQ-PKIMNLKDIIAAFVRHRR 359 ++V + V L +L+ S I + L G+ + N +II F R Sbjct: 1050 FTVKVGEERVERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEIIKEFAPIRL 1109 Query: 360 EVVTRRTIFELRKARDRAHILEA---LAVALANIDPIIELIRHAPTPAE----AKTALVA 412 E RR + L IL +A+ N + II R E + Sbjct: 1110 EFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINNKRKKALIEELFSQGYDPMKE 1169 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 + E + + T + +L + + LT + E Sbjct: 1170 IEDAANAGIRAALKRDVIVDDEALAEGGEEEEEIVAGCTAKHYDYLLGMPMWSLTLEKVE 1229 Query: 473 KLLDEYKELLDQIAELL 489 L E ++ ++ EL Sbjct: 1230 DLRGEMRQKELELEELR 1246 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 186/468 (39%), Gaps = 44/468 (9%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 ++ + + + ++ + R++P + DGLKP R++L++ K K A++ Sbjct: 693 EISYTDFIDKELILFSKA-DCKRSIPSIVDGLKPGQRKILFSCFKRNL---KKEIKVAQL 748 Query: 70 VGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYT 123 G V YH HG+ ++ T+V MAQ F S L+ G FG+ G +A+ RY Sbjct: 749 AGYVSEQSAYH-HGEDSLNGTVVNMAQNFVGSNNINLLYPGGMFGTRLQGGKDSASPRYI 807 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 +L++I + + ++++D+ DG P +P +LVNGS GI +TNI Sbjct: 808 FTKLSEITRYIFPKADDPVLEYLDD-DGQSIEPRFYVPILPMVLVNGSEGIGTAWSTNIE 866 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 +N +++ G A I E+ G GI E + Sbjct: 867 TYNPVDIVEGLKALIKGEEAKEFH-------------PWYKGFDGIIERLAP----TKWQ 909 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + +E K T+ + E+P ++ E++ ++++ ++V+ R+ + Sbjct: 910 TKGVIE---KIDDNTLDISELPIRIWTESFKERLEKMMEAQQVD---DFRENHTDVTVSF 963 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH---HGQPKIMNLKDIIAAFVRHRRE 360 +++ + + LY +L F + + L G + + DI+ F R + Sbjct: 964 TVKMTDKQMKDAEDAGLYDYFKLFKKFSTSNMVLFSEEGGIKEYETVLDILKEFYPIRLK 1023 Query: 361 VVTRRTIFELRKARDRAHILEALAVAL-ANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 +R + L K + IL + I+ I++ + A+ L + Sbjct: 1024 FYGKRKEYMLEKMKKELEILSNKVRFIMEVINETIQVKKRKK--ADLLKELKTKKYSSFP 1081 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT 467 + AGD E E + LT+ +L + L LT Sbjct: 1082 KEKKIAAAGDIQNEEEEEEEDEEKDVA--DLTDG-YNYLLSMPLWSLT 1126 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 100/523 (19%), Positives = 204/523 (39%), Gaps = 52/523 (9%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + I+ + + ++M+ + R++P V DGLKP R+V+Y M K K ++ Sbjct: 721 IEIKNFINQELILFSMADNI-RSIPSVVDGLKPGQRKVIYGMFKKNL---KNEAKVEQLA 776 Query: 71 GDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G + YH HG++++ TI+ +A F S L+ +G FGS G AA RY Sbjct: 777 GYISEQTAYH-HGETSLQQTIIGLAHNFVGSNNINLLLPKGQFGSRIEGGKDAAQPRYIF 835 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++A L + ++++ N +G PD +P LLVNG+ GI G +T IP Sbjct: 836 TMPSRMARLLFDKRDDPILNYL-NDEGLWVEPDYYVPIVPMLLVNGAEGIGTGWSTFIPN 894 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 N ++++ I +E + P G +G + R KV Sbjct: 895 FNPSDLVKNIRHLIKNEPLE-------------PMHPWYRGFKGTIQQMTPDRYKVS--- 938 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV-KEKRVEGISALRDESDKDGMRI 303 + + +T+ + E+P ++ + E + L+ +K+ I + ++ + Sbjct: 939 ----GIIEQVSDDTVDITELPVRLWTQDMKEYLESLMAADKQGSFIKDYTEYHTEENVHF 994 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDIIAAFVRHRRE 360 +++ ++ + + L ++ ++ + NMVA K + DI+ F R Sbjct: 995 RVKLTKEGMATALAEGLENKFKVARTLATSNMVAFDPQGRIRKYDSAYDILKEFYEVRLR 1054 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDP---IIELIRHAPTPAEAKTALVAN--PW 415 RR + + A + I ++ + + E + Sbjct: 1055 YYQRRKEHLVNDLETVYTKISNQARFIHMIIEGTLVVAKKKRSVLVQELREKGFKAIPKP 1114 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 + G +A + + + E T +L++ + LT + LL Sbjct: 1115 KKGRLAEIAAQETAANRDADDDAEEEDASPEADDFT-----YLLNMPVYSLTYERYMNLL 1169 Query: 476 DEYKELLDQIAELLRI------LGSADRLMEVIREELELVREQ 512 + E +++ +L++I L + + +EL+ + Sbjct: 1170 KKKGECEEELDKLMKITPKDIWLTDLEGFEKEWEKELDEDAKT 1212 >UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=Q252N7_CHLFF Length = 479 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 123/515 (23%), Positives = 233/515 (45%), Gaps = 58/515 (11%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ + K+ ++ YA VI+ RA+P + DGLKPV RR+L+ + + + K A + G Sbjct: 3 DVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKI 130 + HPHGD+ + + +V +A + L+D QGNFG+ + GD AA RY E RL+ + Sbjct: 60 RTM-ALHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A +++ + + F D+YDG EK PD++P K+P LL++G GIAVGM T I PHNL E+ Sbjct: 115 AKDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYEL 172 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 I +A +++ ++ PDF + +++ Y+ G G + IRA ++ Sbjct: 173 IEAQIAILNNRTFTLL--------PDFYSGGVMDASE-----YQDGLGSITIRASIQI-- 217 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 +T+I+ EI LI I K ++ I +++D S I I++ + Sbjct: 218 ---VDSKTLIIKEICPSTTTETLIRSIENAAKRGVIK-IDSIQDFSTDQP-HIEIKLPKG 272 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 + +L L+ T+ QV A+++ +P ++ +I+ + + L Sbjct: 273 IYAKDILEPLFQYTECQVVLTSKPTAIYNNKPVETSISEILKLHTEALEGYLQKELQI-L 331 Query: 371 RKARDRAHILEAL-AVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 + H ++L + + + + +++R L++ + + E Sbjct: 332 HDELAQEHYYKSLEYIFIKH--RLYDIVRE----------LLSKLGNKVSQEDLHEAVLA 379 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 A PE + L + IL + + + + + Sbjct: 380 SLAPFISSLPEAPCKQATSQLASLAIKKIL--------CFNETSYTKDLEGIKKKQTAVK 431 Query: 490 RILGSADRLMEVIREELELVREQFGD--KRRTEIT 522 + L + + + L+ + ++G+ KR+T+I Sbjct: 432 KDLSNMKKFT---IKYLKGLLAKYGELGKRKTQIL 463 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 115/534 (21%), Positives = 217/534 (40%), Gaps = 62/534 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + + I + + + ++++ V R++P V DG KP R+VL+ + + Sbjct: 662 LDPNLDAIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLFCCFKINLTYE--- 717 Query: 64 KKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K + V K YH HG+ ++ TIV +AQ F + L+ G+FGS G A Sbjct: 718 IKVGTLAAKVSEKTSYH-HGEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRATGGKDA 776 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RY +L K+A + + +++++ DG+ P+ IP +LVNG+ GI G Sbjct: 777 AAARYIHTQLNKVARSIFHPSDDALFNYLED-DGSPIEPEWYLPIIPMVLVNGAEGIGTG 835 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TNIP N ++I ++ + +M+ + G +G+ E R Sbjct: 836 WSTNIPSFNPLDIIKNIRHLMN------DEVMDEM-------YPWYRGWKGVVEKVDDHR 882 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV--KEKRVEGISALRDE 295 ++Y +VE + G + + E+P + + + E + + EK I + +E Sbjct: 883 FRLY----GKVE---QVGPNVLEITEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDM-EE 934 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH-HGQ-PKIMNLKDIIA 352 + +R +I + + + + +Y + +L + NMVA HG+ K + DI+ Sbjct: 935 QHTNDIRFIITLTPEEMAKTKKIGVYDRFKLVSQVNLKNMVAFDAHGKIRKYDTVLDILT 994 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 F R E +R + +K + + L I I T + ++ Sbjct: 995 EFYYVRLEFYQKRKDYMSQKLQWTVEKISFQVKFLKMI------IDKEYTVSNKAKKIIM 1048 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQ-------------AQAIL 459 + + + + E E G E+Q +L Sbjct: 1049 KELEGFGFPRINKDGKPHYGSVKIEEIEEGNEIEEGNANEEQDDTVHKPSDIVGSYDYLL 1108 Query: 460 DLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 513 ++L LT +EKL + +E ++ LL++ S L +LE +++ Sbjct: 1109 GMKLWDLTMERYEKLRAQKQEKEIELETLLKL--SPKDLWNT---DLEAFEKEY 1157 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 105/517 (20%), Positives = 201/517 (38%), Gaps = 51/517 (9%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + + I + + + ++++ + R++P+V DG KP R+VLY K+ Sbjct: 663 LDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSE 718 Query: 64 KKSARVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ V YH HG+ ++ TI+ +AQ F S L+ G FG+ G A Sbjct: 719 LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDA 777 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RY L K+ ++ + ++ D P+ +P +LVNG+ GI G Sbjct: 778 AAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTG 836 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T IPP N E+I ++DE++ G G E R Sbjct: 837 WSTYIPPFNPLEIIKNIRHLMNDEELE-------------QMHPWFRGWTGTIEEIEPLR 883 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK-IAELVKEKRVEGISALRDES 296 ++Y R + G + + E+P + + + E + L +++ +E Sbjct: 884 YRMYGR-------IEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQ 936 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFG-INMVALH-HGQ-PKIMNLKDIIAA 353 D ++ +I + + + + Y + +L +NMVA HG+ K ++ +I++ Sbjct: 937 HDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSE 996 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANI------------DPIIELIRHAP 401 F R E +R + + + I + II+ + + Sbjct: 997 FYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLG 1056 Query: 402 TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ---QAQAI 458 P K +A + + E E + + E+ + + Sbjct: 1057 FPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYL 1116 Query: 459 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSA 495 L +R+ LT ++KLL + +E ++ LL++ Sbjct: 1117 LGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKD 1153 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 115/508 (22%), Positives = 204/508 (40%), Gaps = 52/508 (10%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + ++ + + ++M+ + R++P V DGLKP R+V++A + Sbjct: 725 LDHSTKSITYDDFVNRELILFSMADNM-RSIPSVLDGLKPGQRKVMFACFKRNLTKD--- 780 Query: 64 KKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 +K + G V K YH HG+ ++ TI+ +AQ F S ++ GNFGS G A Sbjct: 781 QKVVELAGYVSEKAAYH-HGEMSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDA 839 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY RL+ A ++ + L++ ++ V DG P V IP +L NG+ GI G Sbjct: 840 ASPRYIHTRLSPFARKIFSVLDEPNLE-VQMEDGKPIEPKVYAPIIPMVLCNGADGIGTG 898 Query: 178 MATNIPPHNLTEVINGCLA---YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYR 234 +T+IP ++ E++ +D +D + +P G +G E Sbjct: 899 WSTSIPNYHPMEIVRAIKRRMGRLDSDDTEGKPFETMMP--------WFRGWKGTPEPAE 950 Query: 235 TGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK-EKRVEGISALR 293 R K E D KTG II+ E+P ++ K+ E++ K I + Sbjct: 951 KDRYKF----NGIYETDDKTGE--IIIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDYK 1004 Query: 294 DESDKDGMRIVIEVKRDAVGEV--VLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLK 348 + +D + VI++ ++ + + +L N+VA K ++ Sbjct: 1005 EFNDHKNVNFVIQLDEKHYKDIHKTHEGIMDRFKLNKQVATSNLVAFDSTGRIRKYEKVE 1064 Query: 349 DIIAAFVRHRREVVTRRTIFEL-------RKARDRAHILEALAVALANIDPIIELIRHAP 401 DI+ F +R ++ + R L RK +++A ++ + + + I+ R Sbjct: 1065 DILEEFYVYRLDMYSARKKHWLGVYHSDYRKLKNQARFIQEII----DGELIVSKKRKPV 1120 Query: 402 TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDL 461 E + + D A + G D Y L+ I L Sbjct: 1121 LVQELRDRKYEAFPKNDGKKQATTEEEDMDASDNEDDSVGGAADYDYLLSLP----IWSL 1176 Query: 462 RLQKLTGLE--HEKLLDEYKELLDQIAE 487 L++L L K E+ LL Q + Sbjct: 1177 TLERLERLNSAIMKKKGEHDALLAQSEK 1204 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 103/504 (20%), Positives = 195/504 (38%), Gaps = 48/504 (9%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 + I++ + + ++M+ + R++P V DGLKP R+V+Y K +R+ Sbjct: 722 QIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHE---TKVSRL 777 Query: 70 VGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYT 123 G V YH HG+ ++ TIV +AQ F S L+ G FG+ G +A+A RY Sbjct: 778 AGYVASETAYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYL 836 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 L+ +A L + + +++ N +G P+ +P +LVNG+ GI G +T IP Sbjct: 837 NTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIP 895 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 +N ++ ++ E + I + YR RG + Sbjct: 896 NYNPKDITANLRHMLNGEPLEI-----------------------MTPWYRGFRGSITKV 932 Query: 244 A--RAEVE-VDAKTGRETIIVHEIPYQVNKARLIEKI-AELVKEKRV-EGISALRDESDK 298 A R ++ + + G + + E+P + + E + A LV +++ + I + Sbjct: 933 APDRYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHGE 992 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQL-QVSFGINMVALH--HGQPKIMNLKDIIAAFV 355 + + + + E + +L + +L + NM+A K +++DI+ F Sbjct: 993 GNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFY 1052 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW 415 R RR + + R A + I EL+ + L + Sbjct: 1053 EVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEG-ELVVSKKKKKDLIVELKEKKF 1111 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 Q + + E + G +L + L LT + +LL Sbjct: 1112 QPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDAY--NYLLSMPLWSLTYERYVELL 1169 Query: 476 DEYKELLDQIAELLRILGSADRLM 499 + E++ ++ L I + L Sbjct: 1170 KKKDEVMAELDAL--IKKTPKELW 1191 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 121/492 (24%), Positives = 199/492 (40%), Gaps = 54/492 (10%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + + + + + + + RA+P V DGLKP R+VLYA G K A Sbjct: 1006 VKNLTYSDFVDKELVQFCRAAN-ARAIPSVVDGLKPGQRKVLYASFKRGLTQEM---KVA 1061 Query: 68 RVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMR 121 ++ G V YH HG+ +++ TIV MAQ F + L+ G FG+ G AA+ R Sbjct: 1062 QLAGYVAEHTAYH-HGEESLHGTIVNMAQDFVGANNLPLLLPSGQFGTRLQGGKDAASAR 1120 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 Y +LA + + DL+ +++++ DG P+ IP +LVNGS G+ +G T+ Sbjct: 1121 YIFTKLAPLTRTIFPDLDDPVLNYLEG-DGDRIQPEFFAPIIPMVLVNGSEGLGMGWRTS 1179 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IP +N T +I+ L + +E P P G +G E K Sbjct: 1180 IPMYNPTNLIDNLLRLLHNE-------------PMEPLTPWYKGFKGSVELTPPFTFK-- 1224 Query: 242 IRARAEVEVDAKTGRETII-VHEIPYQVNKARLIEKIAELVK-EKRVEGISALRDESDKD 299 V T +E I + E+P + E + VK EK + + + Sbjct: 1225 -----TYGVIEPTKKEHIFKISELPVRKWTNDYKELLTTYVKPEKGKPTLKDFSEYNTDQ 1279 Query: 300 GMRIVIEVKRDAVGEVVLNN---LYSQTQLQVSFGINMVALH-HGQPK-IMNLKDIIAAF 354 + + R A + + N L +L+ +F + MV HG K M+ DII F Sbjct: 1280 KVDFEVTFPRGAEAKPIPQNAQDLLKLLRLESTFFMKMVLFDRHGAIKEYMDPLDIIRDF 1339 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIEL-IRHA-----PTPAEAKT 408 R E +R R +LE A L + ++L I + + AE + Sbjct: 1340 FEVRMEYYAKRKA-------AREKVLENEAKRLGDKLKFVKLVISGSLKLFGRSKAELRQ 1392 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 LV + G +L A DD + + + + L E + + + +L Sbjct: 1393 DLVKSGLGNG-YENLLSIALDDLTKEKTEQLAHAKQRKDAELAETRRTSAAAMWEHELRA 1451 Query: 469 LEHEKLLDEYKE 480 L +KL +++ Sbjct: 1452 L-RDKLDKAHEK 1462 >UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603, partial n=1 Tax=Taeniopygia guttata RepID=UPI000194EBBC Length = 424 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 109/421 (25%), Positives = 203/421 (48%), Gaps = 55/421 (13%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D + + + +S +LDYA VI+ RA+P++ DGLKPV RR+L++M +L + Sbjct: 37 DTSNDTIRHQLRGMYQSWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKLL---DDGR 93 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMR 121 + K A +VG+ + ++HPHGD+++Y+ +V++ Q + +LV+ QGN+G ++ G AAA R Sbjct: 94 FNKVANIVGNTM-QFHPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGR 148 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 Y E RL++ A +D V N P V + + GIAVG+++ Sbjct: 149 YIEARLSQFA-----------LDVVYN-------PKVTEWTL------SAEGIAVGLSSK 184 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GK 239 I PHN E+I+ ++Y+ E ++ PDF T I+ R Y G G Sbjct: 185 ILPHNFNEIIDAAISYLRGEPFTLY--------PDFFTGGSIDVSR-----YNDGERGGV 231 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 V IRA+ E K +T+ + EIPY A LIE I + + +++ I ++ D + + Sbjct: 232 VKIRAKIE-----KIDNKTLAITEIPYGKTTATLIESIVKAQEAGKIK-IRSVVDNTAQT 285 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 +++ + + ++ LY+ T +VS N + +P + + D++ V R Sbjct: 286 A-NVIVYLLPGTSSDKTIDALYAFTDCEVSVSPNCCVISDNKPHFIGVSDVLRHNVDRTR 344 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 +++ + +L + R++ H + + + + +A + + + Sbjct: 345 DILGQELRIQLGEVREQLHFASLERIFIEERIYKDKGYEESENREQAIAHIRGRLEKFKD 404 Query: 420 V 420 + Sbjct: 405 I 405 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 106/525 (20%), Positives = 193/525 (36%), Gaps = 85/525 (16%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + T ++I + + + ++M+ + R++P + DGLKP R+V+++ ++ Sbjct: 636 LDQSQTQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVIFSCFKRNL---RSE 691 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++VG V YH HG+ ++ TIV +AQ F S L+ G FGS G A Sbjct: 692 IKVAQLVGYVSEQSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQGGKDA 750 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY L+ + + + + ++++ N D P+ IP +LVNG+ GI G Sbjct: 751 ASPRYIFTSLSPLTRMIFNENDDAILNYL-NDDNFSIEPEFYVPIIPMVLVNGAEGIGTG 809 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T+IP N +V+ I ED +E +P RG E + G Sbjct: 810 WSTSIPNFNPVDVVENIRRMIRGED-----PVEMVPY--------YRNFRGTIE--KIGE 854 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 GK + E G + + E+P E + LV+ ++ Sbjct: 855 GKFQVSGIYE-------GDMDLEITELPVGTWTLNYKEFLESLVQAGVAR---DFKEYHT 904 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHHGQ--PKIMNLKDIIAAF 354 + + +++ + +L + + NMV K ++I+ F Sbjct: 905 EKTVSFTVKLSKPVS----------NLKLNSTITVNNMVCFDENLRIKKYATPQEILKEF 954 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 R R L+ R+ LE + I+ Sbjct: 955 YGVRLRYYLIRKENMLKVMREELEKLENK----------VRFIKE--------------- 989 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL--EHE 472 + R + D Y L+ +IL L ++++ L EH Sbjct: 990 -VSMGELVISRRRKGEVIFDLESRGYARADDYEYLLS----MSILSLTVERIERLSNEHA 1044 Query: 473 KLLDEYKELLDQIAE---LLRILGSADRLMEVIREELELVREQFG 514 K L EY +L+ + + L + + + E ++ Sbjct: 1045 KRLSEYNQLMGKTPKELWLEDLEVFEKEYLRIAENEAREYDDELN 1089 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 102/490 (20%), Positives = 184/490 (37%), Gaps = 62/490 (12%) Query: 33 ALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDTIV 90 ++P + DGLKP R+VL+A N K K A++ G V I YH HG+ ++ TIV Sbjct: 313 SIPCLVDGLKPGQRKVLFACFKRAN---KREVKVAQLAGAVAEISAYH-HGEQSLMGTIV 368 Query: 91 RMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 146 +AQ + S L+ G FG+ G +A+ R +L+++ L + + F+ Sbjct: 369 NLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFL 428 Query: 147 DNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIE 206 + P+ IP +LVNG+ G G +TNIP +N E++ I E Sbjct: 429 YE-ENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEP---- 483 Query: 207 GLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI---RARAEVEVDAKTGRETIIVHE 263 ++ + Y+ RGK+ A + TI + E Sbjct: 484 -------------------QKALAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNTIEITE 524 Query: 264 IPYQVNKARLIEKIAELVKE---KRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNN- 319 +P + EK+ E + E K+ I ++ ++ V+++ + E+ Sbjct: 525 LPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQD 584 Query: 320 LYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVRHRREVVTRRTIFELRKAR-- 374 L+ +LQ + L + + I F R+E +R + L + Sbjct: 585 LHQVFKLQAVINTTCMVLFDAAGWLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQ 644 Query: 375 -DRAHILEALAVALAN-------------IDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 R +A N +D +I++ A + K + Sbjct: 645 SKRLTNQARFILATINNKIVLENKKKTAIVDVLIKMKFDADPVKKWKEDQKLKELRESGE 704 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + E A E + + L++ ++ L L KL+ E KL+ E +E Sbjct: 705 IELDEDDLAAVAVEEGEDISSAAKAVETKLSDY--DYLVGLALIKLSEEEKNKLIKESEE 762 Query: 481 LLDQIAELLR 490 + ++ L + Sbjct: 763 KMAEVRVLEK 772 >UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YYJ6_BRAFL Length = 1181 Score = 305 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 89/358 (24%), Positives = 155/358 (43%), Gaps = 38/358 (10%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + E + + ++ S R++P + DGLKP R+VL+ +K K A++ Sbjct: 153 LTFNEFVHKELVLFSNSDN-ERSIPSLVDGLKPGQRKVLFTCLKRN---DKREVKVAQLA 208 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG++++ TI+ +AQ F S L+ G FG+ G AA+ RY Sbjct: 209 GSVAEMSAYH-HGETSLMGTIINLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIF 267 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ +A +L ++ +++ + D + P+ IP +LVNG+ GI G +T +P Sbjct: 268 TMLSTLARKLFNTFDEPMLNYQYD-DNQKIEPEWYIPLIPMVLVNGAEGIGTGWSTKVPN 326 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +++ E+IN L ID +D P P P+ G IEE A Sbjct: 327 YDVREIINNMLRMIDGKD----------PLPMNPSYKNFKG--DIEELEEN-----RFVA 369 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGM 301 EV + TI + E+P + E + E++ EK I+ ++ + Sbjct: 370 NGEVAI---LDNNTIEITELPIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTDTTV 426 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALHHG--QPKIMNLKDIIAAFVR 356 R V+ + + + + L+ +LQ + NMV H ++ I+ F Sbjct: 427 RFVVSMTEEQLMKAEAAGLHKVFKLQSNIASTNMVLFDHNGCLRTYNSVHQILQEFFD 484 Score = 44.5 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 21/212 (9%) Query: 314 EVVLNNLYSQTQLQVSFGINMVALH------HGQPKIMN-LKDIIAAFVRHRREVVTRRT 366 V L L++ + +N + + +G + N + I+ F R E T+R Sbjct: 516 NSVHQILQEFFDLRLQWFLNCLFVVPVLFDHNGCLRTYNSVHQILQEFFDLRLEWYTKRK 575 Query: 367 IFELRKARDRAHILEALAVALANIDPIIE--LIRHAPTPAEAKTALVANPWQLGNVAAML 424 + + A L A I IE L+ E L A + V A Sbjct: 576 DWLMGMLEAEASKLNNQARF---ILEKIEGKLVIENKPKRELIQMLQARGYDSDPVKAWK 632 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTE----QQAQAILDLRLQKLTGLEHEKLLDEYKE 480 E D + L+ E + + T +L + L L+ + E+LL + +E Sbjct: 633 ETQNDKDKPDDLLDVEEEEAESVASSTASRGGPDYNYLLGMPLWNLSREKKEELLKQQRE 692 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQ 512 ++ +L + L +++L E+ Sbjct: 693 KGQELEDLRH--KTPSDLW---KDDLNDFVEE 719 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 107/523 (20%), Positives = 204/523 (39%), Gaps = 95/523 (18%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + ++ + + + + + ++M+ + R++P V DGLKP R+V+++ K Sbjct: 638 LDQSMSNITVRDFVNKELILFSMADNI-RSIPSVIDGLKPGQRKVIFSCFKRNL---KTE 693 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++VG V YH HG++++ TI+ +A F S L+ G FGS G + Sbjct: 694 IKVAQLVGYVSEHSAYH-HGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLLGGKDS 752 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY L ++ + + + ++ D P IP +LVNG+ GI G Sbjct: 753 ASPRYIFTNLNPLSRLIFHEHDIPILESQIE-DNLVIEPTYYVPIIPMVLVNGTDGIGTG 811 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TNIP HN ++I +++++ + YR + Sbjct: 812 WSTNIPNHNPLDLIKNIKRLLNNQE-----------------------PEEMIPYYRNYK 848 Query: 238 GKV-YIRARAEV---EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALR 293 G + I A + +V ++ I V E+P V E + + + + I + + Sbjct: 849 GTITKINAGKYISCGKVFENINKKEINVVELPIGVWTQAYKEYLDQAIADNV---IKSFK 905 Query: 294 DESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH-HGQ-PKIMNLKDI 350 D S + I+I + + ++L S NMV +G+ K N +I Sbjct: 906 DYSTDKTIDILIHMNNNEFS----------SKLTTSISTNNMVCFDRNGKIKKYHNTLEI 955 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTAL 410 + F R E +R I+ L+ D + L+ I+ +I Sbjct: 956 LKDFYEVRLEFYNKRKIYRLKLLADELNKLKNKVRF---IEGVI---------------- 996 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 + ++ + + E EF D + +LD+++ LT + Sbjct: 997 --------TGSIIITQRPLNEIILELERKEFTRYDNY--------EYLLDMKISSLTKEK 1040 Query: 471 HEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 513 KL +EY + EL + + E+L+ +++ Sbjct: 1041 INKLREEYNNKNIEYNELKN-----KSIKNLWFEDLDKFEKEY 1078 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 100/410 (24%), Positives = 171/410 (41%), Gaps = 47/410 (11%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 V I + + + + ++ + R++P + DGLKP R++L+A K K A++ Sbjct: 668 VTITDFINNELILFSNQNNI-RSIPSIVDGLKPSQRKILFACLKRDL---KDEIKVAQLA 723 Query: 71 GDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V YH HG+ ++Y TI MAQ F + L+ G FG+ GD AA+ RY Sbjct: 724 GYVSEHSAYH-HGEQSLYGTITSMAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYIY 782 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL K+ + + + +D+ + DG P IP LLVNG+ G+ G +T+IP Sbjct: 783 TRLNKLTRLIFLKEDDQILDYQEE-DGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIPS 841 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTG----RGKV 240 N ++I+ +D S + ++ P G +G E +G +G Sbjct: 842 FNPIDLIDSLNILLD----SNAENIGNVKLPSLDM--WARGFKGKIEMNDSGKFISKGIF 895 Query: 241 YIRARAE-VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 +++R + +E D + E+P + LVK+ ++ R+ + Sbjct: 896 KMKSRGDSIEFD---------ISELPIGEWTENYKSHLQSLVKKGLIKSKITERNTENSV 946 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHHG--QPKIMNLKDIIAAFVR 356 G I I D E L L +L+ SF + NM + N+ DII F Sbjct: 947 GFTIAIN-DPDEFSESQLKKL----KLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYL 1001 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVAL-------ANIDPIIELIRH 399 R +R +++ + IL L +N++ I+ + Sbjct: 1002 VRLSYYHQRKSHLMKQLEKQIRILSNKVKFLNFITSNESNLNTFIKTKKE 1051 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 95/493 (19%), Positives = 191/493 (38%), Gaps = 35/493 (7%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 V + + + ++M+ + R++P + DGLKP R++L+ + K A++V Sbjct: 682 VTYSDFVNKELILFSMA-DLQRSIPSMVDGLKPGQRKILFVAFK---KIARKEMKVAQLV 737 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG+ ++ I+ MAQ + S L+ G FG+ G +A+ RY Sbjct: 738 GYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIF 796 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +L+ + L + +D N DG P IP +LVNG+ GI G +T IP Sbjct: 797 TKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPN 855 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +N E++ ++ E + P G +G E + G Sbjct: 856 YNPREIVANVRRLLNGESMV-------------PMDPWYRGFKGTIEKTASKEGGCTYTI 902 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 E + TI + E+P + + L + ++ +D+ + Sbjct: 903 TGLYE---EVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVDFD 959 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVRHRREV 361 + + + + + +L + + + L + K + + I+ F R E Sbjct: 960 LILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDLRFEY 1019 Query: 362 VTRRTIFELRKAR---DRAHILEALAVALANIDPIIELIRHAPTPAEAKTA-LVANPWQL 417 +R ++ + +A+ + + I+ + A + + P + Sbjct: 1020 YEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTPFPRKA 1079 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 +V A + A DD A E E Y+ + +L + + LT + E+LL + Sbjct: 1080 ESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVEELLAD 1139 Query: 478 YKELLDQIAELLR 490 +++ +A++ + Sbjct: 1140 RDKMIIAVADMKK 1152 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 95/493 (19%), Positives = 191/493 (38%), Gaps = 35/493 (7%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 V + + + ++M+ + R++P + DGLKP R++L+ + K A++V Sbjct: 682 VTYSDFVNKELILFSMA-DLQRSIPSMVDGLKPGQRKILFVAFK---KIARKEMKVAQLV 737 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG+ ++ I+ MAQ + S L+ G FG+ G +A+ RY Sbjct: 738 GYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIF 796 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +L+ + L + +D N DG P IP +LVNG+ GI G +T IP Sbjct: 797 TKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPN 855 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +N E++ ++ E + P G +G E + G Sbjct: 856 YNPREIVANVRRLLNGESMV-------------PMDPWYRGFKGTIEKTASKEGGCTYTI 902 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 E + TI + E+P + + L + ++ +D+ + Sbjct: 903 TGLYE---EVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVDFD 959 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVRHRREV 361 + + + + + +L + + + L + K + + I+ F R E Sbjct: 960 LILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDLRFEY 1019 Query: 362 VTRRTIFELRKAR---DRAHILEALAVALANIDPIIELIRHAPTPAEAKTA-LVANPWQL 417 +R ++ + +A+ + + I+ + A + + P + Sbjct: 1020 YEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTPFPRKA 1079 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 +V A + A DD A E E Y+ + +L + + LT + E+LL + Sbjct: 1080 ESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVEELLAD 1139 Query: 478 YKELLDQIAELLR 490 +++ +A++ + Sbjct: 1140 RDKMIIAVADMKK 1152 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 118/618 (19%), Positives = 219/618 (35%), Gaps = 116/618 (18%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + + + + + ++ R++P++ DGLKP R+VL+A + Sbjct: 801 YSINNQCRNLRYFDFIHKELVLFSRY-DTTRSIPNLLDGLKPGQRKVLFATFKKKLNNE- 858 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++ G V YH HG+S++ TIV MAQ F S L++ G FGS G Sbjct: 859 --LKVAQLAGYVAEHSAYH-HGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGK 915 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 A+A RY +L+K + + + + ++ + DG + P IP +LVNG+ GI Sbjct: 916 DASAARYIFTKLSKWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIG 974 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDI-SIEGLMEHIPGPDFP------------TAA- 221 G ++++P +N ++I + E + + + G FP Sbjct: 975 TGWSSSVPNYNPKDIIMNLKRMLKGEMMVPMTPWYKSFKGKIFPIKQKSKKNSASNGGGN 1034 Query: 222 ------------------IINGR---------RGIEEAYRTGRGKV--YIRARAEVEVDA 252 I+ G + I+ G G + + A E Sbjct: 1035 NNRKKTAINSFNNGSNSSILIGSQVDAEDDDLQQIQRTNNMGNGIIEETLELGANYETFG 1094 Query: 253 ---KTGRETIIVHEIPYQVNKARLIEKIAE------LVKEKRVE--GISALRDESDKDGM 301 K ET+++ E+P + E + +E I RD S + + Sbjct: 1095 NWYKKNEETLVITELPVRRWTQDYKEWLESTLLPAPNADNDNIENSWIIDYRDNSSHESV 1154 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHHGQP--KIMNLKDIIAAFVRHR 358 I + ++ + + + + + +L+ + NM H + DI+ F+ R Sbjct: 1155 HITVRMRPEKLQQAEMEGIEKIFRLKSTLSTSNMTLFDHNSRIVRYETELDILKEFIPIR 1214 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALA-NIDPIIELIRHAP----------TPAEAK 407 E+ +R + L K +LE + L I +I L + K Sbjct: 1215 LEMYEKRKNYLLSKLNYEKCLLEQKILFLKLVIQGVIGLSNKSKETLVSDLKKNNIKSIK 1274 Query: 408 TALVANPWQLGNVAAMLERAGD-----------DAARPEWLEPEFGVRDGLYYLTEQQA- 455 W + + + + D+ F + Y + QQ Sbjct: 1275 QVQELTQWVGVGGSNLAQNSISGSGIGGNPSFVDSGDNSMDYINFEMNSFDYLESSQQDG 1334 Query: 456 --------------------QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILG-S 494 +L + L LT E +LL+ +L+ + E ++L S Sbjct: 1335 ILESTSYSRETNKGNELKLFDYLLSMPLWSLTK-EKMELLE--ADLIKKTEEYEKLLKTS 1391 Query: 495 ADRLMEVIREELELVREQ 512 + + +EL V E+ Sbjct: 1392 IEEIWNTELDELLKVIEE 1409 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 131/619 (21%), Positives = 230/619 (37%), Gaps = 54/619 (8%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 V ++ + + ++ R+LP V DGLK R+VL+A K A++ Sbjct: 666 VTYQDFVNRELIQFS-HADNQRSLPSVVDGLKISQRKVLFACMKRKLTSE---VKVAQLA 721 Query: 71 GDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G YH HG+++++ TIV MAQ F S L+ G FG+ G AA+ RY Sbjct: 722 GYCSEHTAYH-HGEASLHSTIVNMAQDFVGSKNLPLLFPSGQFGTRLQGGKDAASPRYIF 780 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L K + + + + + D+ DG P IP LLVNG+ GI G +++IP Sbjct: 781 TLLQKHTRLVFPEEDDALLRYADD-DGFPVEPVFYVPIIPMLLVNGAEGIGTGWSSSIPC 839 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 H+ VI+ L +D E+ + + + G G + +TG+ R Sbjct: 840 HHPVLVIDNLLKLLDAEEAGDDLSIVELSL----MTPWAKGFSG--DIRQTGKHSFVSRG 893 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 E + T+ V E+P + + +LV +K + S S++D +R Sbjct: 894 NVE-----QVNTSTVRVTELPVGKWVEDYKKFLWDLVGKKAIRSFSE--HHSERD-VRFD 945 Query: 305 IEVKRD---AVGEVVLNN--------LYSQTQLQVSFGI-NMVALH-HGQP-KIMNLKDI 350 I + R E N L +L+ NM A + GQ K +D+ Sbjct: 946 ISMTRSDLAKYAEDAAENCDAGDSEALVKLLRLEAPLSTSNMHAFNADGQLVKYETSEDV 1005 Query: 351 IAAFVRHRREVVTRRTIF-ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTA 409 + F RR++ ++R E R+ ++ + + ++ I P Sbjct: 1006 LRDFYGVRRKLYSKRKRHLEQRQTKEVLRLSNRIRFIQEVSTGSLQKILRERIPKAELID 1065 Query: 410 LVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL 469 L+ A E + G +E +L+ L T Sbjct: 1066 LLKEHGFAPASAFKEEAIDHMGDLGLAAVGREQGKAGDLDGSED-YDYLLNTSLMSFTKE 1124 Query: 470 EHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADIN 529 ++L E+ D++ +L + +L E L V F ++ + ++D Sbjct: 1125 FADRLRKEHDTKQDKLQQLQA--TTPAQLWRNELERLRAVLSHFLNENSATLKRPASD-A 1181 Query: 530 LEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDH 589 + VV + K E + G S + +D + + N Sbjct: 1182 FGAMAKHGAEVVIVPRN--FKLLEELENSEKGHGDMSISYGLEQADD----IFLTNWIGT 1235 Query: 590 IL--CFS-SRGRVYSMKVY 605 IL + GR+YS++++ Sbjct: 1236 ILGPAGTCHDGRIYSLRIH 1254 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 108/494 (21%), Positives = 197/494 (39%), Gaps = 44/494 (8%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 V+ E+ + + ++ + + R++P DGLKP R+VLYA K+ K A+ Sbjct: 686 NNVSYEDFINKEMIHFSNADNI-RSIPSAIDGLKPSQRKVLYACFKRKL---KSEIKVAQ 741 Query: 69 VVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRY 122 + G YH HG++++ TI+ MAQ F S L+ G FG+ + G AA+ RY Sbjct: 742 LTGYCAEHTAYH-HGEASLQSTIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRY 800 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 LA IA L + + + ++++ DG + P+ IP L+VNG GI G +T I Sbjct: 801 IYTYLAPIARSLFPEADDTLLSYLED-DGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFI 859 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPH+ +V+ LA +D E L + P G +G E G G V Sbjct: 860 PPHSANDVLEYILAKLDG----AERLPKIHP--------FARGFQGRIEPDPNGNGYV-- 905 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 + TI++ E+P + + + ++ +++ + + + Sbjct: 906 ----SFGRSSCISDRTILIDELPLRCWTNKYKGILLKMRDRGE---VTSFVENHNTSKVS 958 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALH-HGQP-KIMNLKDIIAAFVRHRR 359 ++ +K + + L +L+ + NM A + GQ K + I+ AF R Sbjct: 959 FLVTLKSAQLARMTQAGLEKSFKLKTNLQTTNMHAFNKDGQICKFDTAESIVEAFFPVRM 1018 Query: 360 EVVTRRTIFELRKARDRAHILE---ALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 ++ R A IL A+ + D I+L + E L + + Sbjct: 1019 QLYQDRIALLQSLLNYEASILRNKAGFIKAVTSGD--IDLTSGRRSKQETSKKLKEHGFL 1076 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 ++ R ++ + L + +L++ L LT + +L + Sbjct: 1077 DSVELNAIKNENVLWKRRQFASEKGEGGSNLEPMNF---DYLLNMPLSSLTSEKIRELGE 1133 Query: 477 EYKELLDQIAELLR 490 ++ E+ Sbjct: 1134 HAATKDKELEEMKS 1147 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 296 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 108/607 (17%), Positives = 215/607 (35%), Gaps = 88/607 (14%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + + E + + ++M+ V R++P + DGLKP R+V++ K Sbjct: 750 LDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKL---KKE 805 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSA 117 K A++VG + YH HG++++ TI+ +AQ + S L+ G +G+ I G Sbjct: 806 IKVAQLVGYISEHAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDH 864 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RY I + + ++++ + D P+ +P +L+NG+ GI G Sbjct: 865 AAPRYIFTNAKSITRAIYHPFDDPLLNYLKD-DDVPIEPEWYMPTVPMVLINGAEGIGTG 923 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TNIPP+N +++ + +E+ P P P G +G E TG+ Sbjct: 924 WSTNIPPYNPVDIVANLRRMMKEEE----------PEPMTP---WWRGFKG--EVRPTGK 968 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKE-------------- 283 GK + V V K T+ + E+P +++ ++ Sbjct: 969 GKYDV-----VGVATKINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDED 1023 Query: 284 ------KRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFG-INMVA 336 K + ++ D + + + + + L L NM+ Sbjct: 1024 GKKDVVKNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVSTTNMIL 1083 Query: 337 LH--HGQPKIMNLKDIIAAFVRHRREVVTRRTIF---ELRKARDRAHILEALAVALANID 391 K ++I+ F R +R + EL A D+ + + + Sbjct: 1084 FDFEGKIKKYETPEEILKDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIEMIIKKE 1143 Query: 392 PIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLT 451 ++ + A AE + L P+ + ++ + E + Sbjct: 1144 LVVSNRKKADIVAELR-KLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDF--- 1199 Query: 452 EQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVRE 511 +L + + LT EKL + E + L + S L Sbjct: 1200 ----DYLLGMAIYSLTRERIEKLKQQAHE--KEQELLALLEKSPTDLWN----------- 1242 Query: 512 QFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR 571 T++ + + +I ++ + G K + + ++ G G+ Sbjct: 1243 -------TDLDKFLEEWEKDCMIFEQKKGEGGAVNG--KKRKQRTLKTRKSIGMGRRGKD 1293 Query: 572 IKEEDFI 578 ++DF+ Sbjct: 1294 SDDDDFV 1300 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 108/536 (20%), Positives = 193/536 (36%), Gaps = 69/536 (12%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 + E + + ++M+ + R++P + DGLKP R+VL+A K K ++ Sbjct: 652 ELGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNL---KQEIKVVQL 707 Query: 70 VGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYT 123 G + YH HGD ++ TI+ MAQ F S L+ +G FGS + G A+ RY Sbjct: 708 GGYIAEHSAYH-HGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYI 766 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 L KI + + + + + ++ DG P+ IP LVNG+ GI G +T+I Sbjct: 767 STALNKITRYIFPEQDDHLLKYQED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQ 825 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 +N E++N +D + P GI E G G + Sbjct: 826 NYNPIELVNQIKNRLDGQPFQ-------------PMTPFYRNFDGIIENLPNGNGIIKG- 871 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 +D + I + E+P + E + + + E+ I LR+ K + Sbjct: 872 -----IIDCNEATDIITIRELPIKKWTRNYKEWLDKEMAEEG-SQIVDLREYHTKYKIHF 925 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDIIAAFVRHRRE 360 I++ V + L N +L NMV + K + DI+ F + R + Sbjct: 926 EIQMVDGFVSD--LKNPLEYFKLSTPASCSNMVLFDSNNKIKKYECVSDIMEEFYQVRLQ 983 Query: 361 VVTRRTIFELRKARDRAHILEALAVALAN-IDPIIEL-----------------IRHAPT 402 +R + + K +L+ + I I++ R + Sbjct: 984 FYHKRKEYLVSKLDREVQLLDNKLKFIKMVISEEIQIRNVKKIDLVKQLDKNGFTRFSQL 1043 Query: 403 PAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQ-----A 457 T + A + + +D E + + + + Sbjct: 1044 IQVKSTKVKAFGDSQKQKKNVDDDESEDEQVSEDEDKQQKKQIQKKLQSTPSIDISEFNY 1103 Query: 458 ILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 513 +L + L LT + EKL +E R+ + + I ++F Sbjct: 1104 LLSMPLFSLTYEKVEKLQEELN---------QRVQSREALVNKEISLMWREDLDKF 1150 >UniRef50_Q56C44 Gp52 DNA topoisomerase subunit n=1 Tax=Enterobacteria phage RB43 RepID=Q56C44_9CAUD Length = 387 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 180/396 (45%), Gaps = 45/396 (11%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 +I++ ++ L +A+ I RA+P + DG KPVHR +++ G+ ++K A + Sbjct: 2 ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFVHSAAKGGSG----FQKVASI 57 Query: 70 VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 129 G V + HG+++V + + MA + L D G FGS A RY +L+ Sbjct: 58 AGGVAIYGYHHGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIYCKLSP 117 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 + + D + + D P IP +LVNG GIA G ATNIPPH+ Sbjct: 118 LFKAIYMDEDLTI----PHEDPEHLPPAYYLPIIPMVLVNGFRGIAKGYATNIPPHDPVS 173 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 V+NGC++Y++ +D +++ + P F I++G T GK ++ + + Sbjct: 174 VLNGCVSYLNGKDFTLD-----LKYPQF-KGDIVDG---------TMYGKYELQGKTK-- 216 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 +++ EIP + ++ + I I + ++EK I + +D S K+ R I +KR Sbjct: 217 ---------LVITEIPVKYDRVKYI-AILDKLEEKGC--IVSYKDLS-KEDFRYEITLKR 263 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPK-IMNLKDIIAAFVRHRREVVTRRTIF 368 + + + L + N+ + +G+ + ++ FV R T++ Sbjct: 264 EYANGLTHEKILKDFGLIENSNPNINVIFNGKLHSYERPETLLKDFVD------IRMTVY 317 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPA 404 + R + EALA ALA ++ I ++I + Sbjct: 318 QQRIEKRIQEAKEALARALAKVEFIDQMIESPDSLK 353 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 103/522 (19%), Positives = 203/522 (38%), Gaps = 54/522 (10%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L +++ ++ E+ + + ++ R++P V DGLKP R+VL+ Sbjct: 647 LDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIM---KE 702 Query: 64 KKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K +++ G V K YH HG+ ++ TIV MAQ F S + G FGS G Sbjct: 703 LKVSQLSGLVSEKSSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLGGGKDQ 761 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RY RL+ I+ L + + ++++ + D P IP +LVNG+ GI G Sbjct: 762 AAARYIYTRLSSISRYLCPKDDDQILEYLVDED-RRIEPKYYCPIIPTVLVNGADGIGTG 820 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T + +N ++++ C Y++ E+ G G + G Sbjct: 821 WSTAVSNYNPLDLVDNCRRYLNGEEFKE-------------MKPWFRGWTGQLRKNKDGS 867 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 G + + + I + E+P Q+ + + + ++ K V+G S Sbjct: 868 G-YDCYGKWR-----RLADDKIEITELPIQIWTDTYKQHLEKCIEAKIVKGYSEY---HM 918 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH--GQPKIMNLKDIIAAFV 355 + + VI++ + E + NL + ++ + NM + K + DI+A F Sbjct: 919 VNTVHFVIDLVQPMSDEDIWTNLKLVSSVKTT---NMHLFNSEYKITKYHTVLDILAEFC 975 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE--LIRHAPTPAEAKTALVAN 413 R + R + + IL + +IE LI + E L+ Sbjct: 976 DVRMKGYEERKKAIIESMERQLMILSNKVRFIKM---VIEGDLIINNRKKNELYKDLIKL 1032 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 + ++ + E D + +L +++ LT + +K Sbjct: 1033 GFDQIRDPKKANKSKPIGESEDAEIKEEDDDDEVGGY-----DYLLGMKIWTLTYEKAKK 1087 Query: 474 LLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 L+++ +L QI + + ++ ++L+ +++ Sbjct: 1088 LMEDCDDLKTQIDTVKT-----TPVKDMWLKDLDAFVKKYPQ 1124 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 98/497 (19%), Positives = 195/497 (39%), Gaps = 49/497 (9%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + + + + + ++ + + R+LP+V DGLKP R+VLYA K K A++ Sbjct: 696 ITYGDFVDNELIHFSNANNI-RSLPNVVDGLKPSQRKVLYACFKRNL---KDEIKVAQLA 751 Query: 71 GDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAAAMRYTE 124 G YH HG+++++ TI+ MAQ F S L+ G FG+ + G+ AA+ RY Sbjct: 752 GYCAEHTAYH-HGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDAASPRYIF 810 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ ++ L + +++ + DG P+ IP LLVNG GI G +T IP Sbjct: 811 THLSPLSRLLFPVDDDMLLNYKEE-DGQMIEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQ 869 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI-- 242 HN +V+N A +D+ + I + G + + Sbjct: 870 HNPLDVLNYIRAKLDETK-----------------------KPAIRPWVKGFEGGITVDS 906 Query: 243 -RARAEVE-VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 R E + ++++ E+P V + ++K+ I + Sbjct: 907 KRGDYVTEGIITPQKNSSVVISELPVGVWTNDYKATLVAMLKK---AEIKSFSQNHTTTT 963 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVAL--HHGQPKIMNLKDIIAAFVRH 357 + ++V + ++ ++ +L+ + NM A + + ++I AF Sbjct: 964 VSFNVKVNAAKLNRLLKGDMLKTFKLRKALSTRNMHAFTTDMKIARYNSPEEIADAFFPV 1023 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDP-IIELIRHAPTPAEAKTALVANPWQ 416 R ++ R A ++ A + + I+L+ + L + Sbjct: 1024 RLDLYADRKSVLESNMEYSASLMRNKARFIEAVSANKIDLLHGRKSKEATTALLEEMEFS 1083 Query: 417 LGNVAAMLERAGDDAARPEW---LEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 + ++ + A R E + EF + ++ +L+L L LT + + Sbjct: 1084 KQSELDAIKSNNNIAQRRESSNVVMDEFMSDEESAKGAAKEYDYLLNLPLSSLTLEKIDA 1143 Query: 474 LLDEYKELLDQIAELLR 490 L D+ + ++ ++ Sbjct: 1144 LNDDAAKTDTKLEQIKN 1160 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 107/525 (20%), Positives = 212/525 (40%), Gaps = 80/525 (15%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + I + + + + Y+ + + R++P + DGLKP R++L+A Sbjct: 781 IDHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNE--- 836 Query: 64 KKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K +++ G V + YH HG+ ++ TIV+MA F S L+ G FG+ G + Sbjct: 837 IKVSQLSGYVAEQTSYH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDS 895 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY +L +A L +L+ +++++ +G PD IP LLVNGS GI VG Sbjct: 896 ASARYIFTKLEPVARYLFNELDDPLLNYLEE-EGESIQPDYYIPIIPMLLVNGSEGIGVG 954 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI----EEAY 233 M+T+IP + ++I+ + ++++ L + IP G +G Y Sbjct: 955 MSTSIPLFSPIDIIDQLMLRLNNQ----VALKKLIP--------WYRGFKGTISPDRHTY 1002 Query: 234 RTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALR 293 RT G + + R + + E+P + E + +L+ + I + + Sbjct: 1003 RT-NGVIKLVGR------------NLEITELPIGRWTSDYKEVLNDLIDKDV---IKSFQ 1046 Query: 294 DESDKDGMRIVIEVKR---DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQP--KIMNLK 348 + + ++ + I + + + ++ N L +L S ++ K+ +++ Sbjct: 1047 ESNTENSVHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVE 1106 Query: 349 DIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKT 408 +II F + R + +R + L+ ++ L L I A Sbjct: 1107 EIIDQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVI---------------ASG 1151 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 L ++ LE +G+ + V L+ L+ ILD+ +++ Sbjct: 1152 KLKIQGRSKQDLIKELE-SGEIVGFENFGTHPPEVYQHLFSLS------ILDITKERIDN 1204 Query: 469 LEHEKLLDEYKELLDQIAELLRILGSADR-LMEVIREELELVREQ 512 L +L + +E I S + L ++L+ E+ Sbjct: 1205 L--------TNQLTKRKSEHQSISSSDPKSLWTADLQQLKEYLEK 1241 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 286 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 114/544 (20%), Positives = 206/544 (37%), Gaps = 68/544 (12%) Query: 15 EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 74 + + + ++ ++ R++P + DG KP R+VL+ + K A+ VG V Sbjct: 690 DFINKELVQFSKYDVM-RSIPSMVDGFKPSQRKVLFCALKRNLKSD---TKVAQFVGYVS 745 Query: 75 --GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTEIRLA 128 YH HG+ ++ IV MAQ F S L+ G FG+ G AA+ RY RL+ Sbjct: 746 EHSAYH-HGEQSLESCIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYTRLS 804 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 K + + + ++++ +G P IP +LVNG+ GI G +TN+ ++ Sbjct: 805 KYTRTIFHPDDDDVLEYL-TEEGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSYDPR 863 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV 248 E+I+ A I L + P G G E R + + + Sbjct: 864 EIIHLLRALIRG-----VELHDIHP--------WYRGFTGSVE--RNDKNGYDFVGKVRM 908 Query: 249 EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK 308 D + T+ + E+P + + + LV + G + + ++ Sbjct: 909 ASDDR----TVDITELPVKTWTQNYKD-LDTLVVSVILLG-----RYHTEHSVHFKCTLQ 958 Query: 309 RDAVGEVVLN-NLYSQTQLQVSFG-INMVALH-HGQ-PKIMNLKDIIAAFVRHRREVVTR 364 +A VV + L +L+ +F NMV G+ + ++ DII F R ++ + Sbjct: 959 NEAAKSVVDSLGLEKAFKLRSAFSTTNMVLFDRDGKIRRYDSVLDIIKDFADLRLDMYVK 1018 Query: 365 RTIFELRKARDRAHILEALAVALANI---------DPIIELIRHAPTPA-------EAKT 408 R + K IL + + I++L+ +A+T Sbjct: 1019 RKDSLIAKLTKEILILSNKCRFVMMVINGEIVFQKKKIVQLMEELKRKKFMTMMEIDAQT 1078 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA----QAILDLRLQ 464 G A D+ E D + +QQ +L + + Sbjct: 1079 RAAKIGSLKGKTVAASSATSDEVKSEGESSEEEEEADEEAKVEKQQKRSGYDYLLAMSMW 1138 Query: 465 KLTGLEHEKLLDEYKELLDQIAELLRILG-SADRLMEV-IREELELVREQFGDKRRTEIT 522 LT LE + ++ L D+ EL + G S + + + + + L + E D+RR + Sbjct: 1139 SLT-LERVEAMERL--LHDKEGELKVLRGRSIEEMWDRDLVQLLAALDED--DERRAKDI 1193 Query: 523 ANSA 526 A Sbjct: 1194 QAEA 1197 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 107/568 (18%), Positives = 202/568 (35%), Gaps = 83/568 (14%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + V+ + + + ++++ R++P DG KP R++L++ + Sbjct: 650 ESMDYSVRQVSYRDFVDKELILFSIA-DCERSIPSAIDGFKPGQRKILFSCFKRNLVNS- 707 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K ++ G V YH HG+ ++ TIV MAQ F S L+ G FG+ G Sbjct: 708 --IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGGK 764 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 AA RY RL +A + + V++ D+ DG P IP +LVNG++GI Sbjct: 765 DHAAGRYIFTRLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNGTTGIG 823 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +T+IP +N EVI + E++ G G E Sbjct: 824 TGFSTSIPNYNPLEVIRNLERLMRGEEVHK-------------MQPWYFGFTGTME--EK 868 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 GK R EV D + + E+P V + + ++ ++ E + R+ Sbjct: 869 EPGKFISHGRYEVRPDG-----VVCITELPIGVWTQTYKKFLEDMREK---ELVVQYREH 920 Query: 296 SDKDGMRIVIEVKRDAVGEVV-LNNLYSQTQLQVSF-GINMVALH--HGQPKIMNLKDII 351 + + + + + + V + + + QL+ N++A + K + + ++ Sbjct: 921 TTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYWDAESVL 980 Query: 352 AAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP--IIELIRHAPT------- 402 F R + +R + L + R LE + + + ++ R Sbjct: 981 KDFYLVRLDYYAKRKDYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLEDLQG 1040 Query: 403 ------PAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ--- 453 P AK L + + A + G D T + Sbjct: 1041 RLYLPFPPHAKKKLSSTTVEEEGGEAEPTTQNSEEDVLGMGSAADGGVDDGDAETPEVRR 1100 Query: 454 ---QAQAILDLRLQKLTGLEHEKLLDEY--------------------KELLDQIAELLR 490 +L ++L LT +L + ++L +L Sbjct: 1101 ATRNYDYLLGMKLWSLTAEMIARLEAQLARARHDTATMEARTPKDMWMEDLQVLRTKLES 1160 Query: 491 ILGSADRLMEVIREELELVREQFGDKRR 518 + + + I+ + V++ F D RR Sbjct: 1161 FYAAREVEIATIQR--KKVKKPF-DARR 1185 >UniRef50_UPI0001B4252C DNA gyrase subunit A n=1 Tax=Listeria monocytogenes FSL J1-175 RepID=UPI0001B4252C Length = 288 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 96/254 (37%), Positives = 159/254 (62%) Query: 588 DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF 647 D +L F++ G+VY K Y++PE R A+G PI+NLL +E E++ A++ ++EF + +F Sbjct: 1 DTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLF 60 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 T +G VK+T L++F ++R +G A++L + DELI V +T G +++ + G+ + F Sbjct: 61 FTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFP 120 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 E ++R MG GVRGIRL E D+V+ + V D +L T+ GYGK+T ++YP ++R Sbjct: 121 EENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRG 180 Query: 768 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 GV ++ +TE+NG +V V + +M++T +G L+R + +S GR+ GV LIR Sbjct: 181 GMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRL 240 Query: 828 AEDENVVGLQRVAE 841 EDE V + +V + Sbjct: 241 DEDEKVATVAKVPK 254 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 71/183 (38%), Gaps = 11/183 (6%) Query: 512 QFGDKRRTEITANSADINLEDLITQ----EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGK 567 QF R++ + A N E + Q ++ + G Y P R G Sbjct: 75 QFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGV 134 Query: 568 SAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQ 627 R++E+D + + V + +L + +G Q P RG G V + E+ Sbjct: 135 RGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTIT--EK 192 Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA--GKVAIKLVDGDELIGV 685 + + A+ VT E+ + + T +G + + + ++ + G I+L + +++ V Sbjct: 193 NGNLVAMKTVTGEED---LMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATV 249 Query: 686 DLT 688 Sbjct: 250 AKV 252 >UniRef50_Q6U961 Topoisomerase II medium subunit n=3 Tax=unclassified T4-like viruses RepID=Q6U961_9CAUD Length = 555 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 105/475 (22%), Positives = 189/475 (39%), Gaps = 42/475 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 +S+ E+ +++ + L++AM + RA+P + DGLKPV R +Y Sbjct: 103 LSNHLTELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNR 162 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + K A + G V + HG+ + +A ++ +++G GNFGS AAA Sbjct: 163 SKFNKVAALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAP 222 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RY R+ + ++ D+E V + P IP +L NG GIA G AT Sbjct: 223 RYVFCRVHQNFWDIYRDIELAPVHPEPEH----LPPRYYLPVIPMVLANGVKGIATGYAT 278 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NI PH+ +I A I+ + I + P+F +I R + Sbjct: 279 NIFPHSYKSLIKCTKAAIEGKPIPRLE----VQFPEFS--GVIR---------RVSAKTI 323 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + E+ +G+ + + E+P + ++ + + +L + ++ E K+G Sbjct: 324 EVEGLYEL-----SGQTKLTITELPVKFDRLSYVILLDKLKDQGKIVSYK----EQHKNG 374 Query: 301 MRIVIEVKR--------DAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQP-KIMNLKDI 350 R + +KR E + L+ N+ L+ G+ + +D+ Sbjct: 375 FRFDVTLKRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDV 434 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANI--DPI-IELIRHAPTPAEAK 407 I FV HRR+ R +E +K+ + A + + D I I+ + A E Sbjct: 435 IRDFVEHRRKFTAERVEYERQKSEHARDLAWAKFKFINMVIDDKITIKGKQKAELVKEIA 494 Query: 408 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL-TEQQAQAILDL 461 + ++ V + R +D E + Y+L T +A+ I DL Sbjct: 495 SNPDFKGFENELVGMSIYRMTEDETYKLQDEAIKQGKLFDYWLGTTPEAEYINDL 549 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 107/530 (20%), Positives = 210/530 (39%), Gaps = 76/530 (14%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 T ++ +E + + + M V + R++P + DGLKP R++L+ + L N K ++ Sbjct: 582 TEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNMDESTEIKVSQ 638 Query: 69 VVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRY 122 + G V + YH HG+ ++ TI+RM Q F S L+ G FG+ G+ AA+ RY Sbjct: 639 LAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARY 697 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 LA L + + + + +G P + +P +L+NG+ GI G +T I Sbjct: 698 IFTALAPTTRLLFPQADDDLLQ-KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWSTKI 756 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 N ++I+ ID I+ I Y RGK+ + Sbjct: 757 ANRNPIDIIDMIRRKIDS----------------------ISTEYEIPPFYEEFRGKLEV 794 Query: 243 --------RARAEVEVDAKTGRET--IIVHEIPYQVNKARLIEKIAELVKEKRVEGISAL 292 + ++ + T I + E+P + ++ EK++++V+ V S Sbjct: 795 VTPTKFISSGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSE- 853 Query: 293 RDESDKDGMRIVIEVKRDA-VGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIM-NLKD 349 R + RI ++ K+ + + ++L + +L+ S N V +G+ K N+ + Sbjct: 854 RHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISE 913 Query: 350 IIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTA 409 I A F RR++ +R + + + + + N IE++ T + Sbjct: 914 IAAEFFEVRRDLYEKRLKIQKEECEAKL-------IYVENQLNFIEMV----TNGTIEIR 962 Query: 410 LVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL 469 + + M R A + + +L++ + +LT Sbjct: 963 SMGRNQLEEKLQEMGFRVDPMATIAKNSKKANYG-------------YLLEMPVSRLTSD 1009 Query: 470 EHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRT 519 E ++L + ++ + R EL+ + E G+ R++ Sbjct: 1010 EMKRLEERKSRRRTELEAAES--ADWKSVW---RSELDKLAEAVGNNRKS 1054 >UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n=6 Tax=Leptospira RepID=Q04PE8_LEPBJ Length = 462 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 107/515 (20%), Positives = 208/515 (40%), Gaps = 69/515 (13%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 L E+++ Y+ V RA+P DGLKPV RR+L+AM +D Sbjct: 8 KLKDSFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW--NSDARNR 65 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFS--LRYMLVDGQGNFGSIDGDSA-AA 119 Y K+ +V G +G YHPHGD ++ D + +MAQ F+ LV G+G FG + SA A+ Sbjct: 66 YTKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIAS 124 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 RYTE++L+ +L +D+V NYD TE P K+P +L+N GIA G Sbjct: 125 PRYTEVKLSDFVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFR 184 Query: 180 TNIPPHNLTEVINGCLAYIDD-EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG 238 IP H L +++ + Y+ + +S++ G + T G Sbjct: 185 CFIPGHRLADIVKSQINYLKTKKPLSLK--------------PWYKDFNGEVKMAETETG 230 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 + + + + + + + P N+ ++I + +++ E++ + D S + Sbjct: 231 NITMSTTFAFKWEGDI----LYLTDSPMNWNREKVISLLDDIL-ERKDSWLKEYVDYSSQ 285 Query: 299 DGMRIVIEVKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 RI ++ K+ + + L+++ +Q + +N++ + G+ K ++II F Sbjct: 286 -TFRIELQYKKGEKPSQKEIMALFNKEDIQ-TLAMNVIT-YDGKLKNFKPEEIIKRFCDF 342 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R+ + RR ++ +I I+ W Sbjct: 343 RKTHLIRRFKRLSGLEEEKIE----------RNSELIRFIKE--------------KWNE 378 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + ++ +D + + + + + ++T E +K + Sbjct: 379 KVIGIKSKKDFEDKLKASKFKYFEWLST---------------IPVYRMTIEEVKKCEEA 423 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQ 512 E +A ++ +L + + EL ++ + Sbjct: 424 IIEAKTTLARYQGLVKEDKKLTDYMITELNELQNK 458 >UniRef50_C4MZZ9 Gp52 topoisomerase II, medium subunit n=2 Tax=unclassified T4-like viruses RepID=C4MZZ9_9CAUD Length = 459 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 100/467 (21%), Positives = 189/467 (40%), Gaps = 37/467 (7%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 TP +++ + + L YAM + RA+P++ DG KPV R V+ + + + Sbjct: 17 DDTFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFH 76 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K A + G V + HG+ + + MA ++ + L+DGQGNFGS AAA RY Sbjct: 77 KLASIAGGVADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIF 136 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+ ++ D E V + D K P IP +L+NG SGIA G ATNI P Sbjct: 137 ARIGTNFAKVYKDTEYAPV----HADVEHKPPAFYLPIIPTVLLNGISGIATGYATNILP 192 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 H+ V L + ++ ++ + P+F + G +R Sbjct: 193 HSFDSVKKAVLQVLQEKRVT----KPKVAYPEFRG-----------DVVEIEPGSYELRG 237 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + T R + + EIPY+ ++ + K+ + +++K G D+ D++G Sbjct: 238 TYKF-----TSRTQMHITEIPYKYDRETYVAKVLDPLEDK---GYITYDDDCDENGFGFK 289 Query: 305 IEVKRDA----VGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIM-NLKDIIAAFVRHR 358 ++++++ + L N+ ++ G+ K+ ++ ++I FV R Sbjct: 290 VKIRKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVR 349 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALAN-IDPIIEL---IRHAPTPAEAKTALVANP 414 + V +R ++ + + + A A + + ID ++ + R T + Sbjct: 350 KTFVQKRIDGKIIETEEAFKLALAKATFIKDVIDGVVVIQGKTRKVLTEELTGNKVYGEY 409 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDL 461 + D+A + + T+ + + DL Sbjct: 410 ADKLVAMNIFHITSDEAKKLALEAKAKKEEHQYWKTTDVVTEYVKDL 456 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 97/449 (21%), Positives = 169/449 (37%), Gaps = 41/449 (9%) Query: 48 VLYAMNVLGNDWNKAY---KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRY 100 +L++ L + K K A+ +G V YH HG+ ++ TI+ MAQ F S Sbjct: 679 ILFSRADLFGSFKKKLYKEIKVAQFIGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNI 737 Query: 101 MLVDGQGNFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 158 L+ G FG+ + G A+ RY L+ + L + + + ++++ N DG P+ Sbjct: 738 NLLKPNGQFGTCNLGGKDHASARYIYTELSPVTRCLFHEHDDKLLEYL-NEDGKSIEPNW 796 Query: 159 MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP 218 IP +LVNGS GI G ++ IP +N E+I ++ E++ P Sbjct: 797 YMPIIPLVLVNGSEGIGTGWSSYIPNYNPREIIANVRRLLNGEELV-------------P 843 Query: 219 TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARL---IE 275 G RG E G + E+D +T R + E+P + +E Sbjct: 844 MDPWYKGFRGTIEKSAK-EGGYIVNGTVT-EIDEQTFR----ITELPIRKWTQDYKQFLE 897 Query: 276 KIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMV 335 I + + I R D + I I++K + + ++ L+ + +L + + + Sbjct: 898 SITDGAPNVKDPLIEDFRQNGDDAIVDIEIKMKPEKIATILQEGLFKKFKLTSTISTSNM 957 Query: 336 ALHH--GQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA---NI 390 L G K + I+ F R + + + L IL+ + N Sbjct: 958 HLFDAEGNKKFDTPEQILEEFFPLRLDYYEKSKEYILGNLNRLLLILDNKVRFILGVVNG 1017 Query: 391 DPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL 450 + I+ + A E K + G +D E + E + Sbjct: 1018 EIIVSNRKKAELLIELKEKGFTPMPRKGKSTKPQVAGANDDDSEEQEDAEPETASQSVSV 1077 Query: 451 ---TEQQAQAILDLRLQKLTGLEHEKLLD 476 T +L L + LT +KLLD Sbjct: 1078 EGATWGDYDDLLSLPIGTLTLESVQKLLD 1106 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 114/500 (22%), Positives = 195/500 (39%), Gaps = 85/500 (17%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + L + V + + + + ++ + R++P V DG KP R+VLY + Sbjct: 622 NQLDHKKPEVPVPDFIDKELILFSRY-DLERSIPSVVDGFKPSQRKVLYCAFKRNLTSD- 679 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A+ G V YH HG+ ++ TIV +AQ + S + +G FGS G Sbjct: 680 --VKVAQFSGYVAEHSAYH-HGEVSLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGGK 736 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 A+ RY +L ++ D + + ++ + DG + P+ IP++LVNGSSGI Sbjct: 737 DHASARYIFTKLNPKTRQVFVDTDDNLLKYLYD-DGDKIEPECYVPIIPSILVNGSSGIG 795 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +TNIP +N ++++ I ED L+E P G +G + T Sbjct: 796 TGSSTNIPSYNPKDIVDNVKRLISGED-----LVEMKP--------WYKGFKG--KIMET 840 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 G + +TI+V E+P E + L+ EK++ IS R++ Sbjct: 841 SPGVYVTKGLY------MPNGKTIVVSELPVGKWTHDYKEHLDGLL-EKKI--ISYFREK 891 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALH--HGQPKIMNLKDIIA 352 + I D VG ++ L +L+ + NM A K DII Sbjct: 892 HSDTDVLFEI----DFVGNPNIDIL----KLETTIRSTNMHAFDPSGKIKKYDTPLDIIR 943 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEAL--AVALANIDPIIELIRHAPTPAEAKTAL 410 + R+++ +R + L R +I + + + N D II +H + L Sbjct: 944 DWFEVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAELEKL 1003 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 F DG Y +L++R+ LT Sbjct: 1004 -----------------------------NFYKVDGKY-------DYLLNMRISSLTLER 1027 Query: 471 HEKLLDEYKELLDQIAELLR 490 +L E +L ++ +L + Sbjct: 1028 ATELEREAVKLNKELDDLSK 1047 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 95/499 (19%), Positives = 197/499 (39%), Gaps = 64/499 (12%) Query: 25 AMSVIVG--RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI--GKYHPH 80 AM I R++P DGLKP R++++ + + +K K + + G V +YH H Sbjct: 356 AMHSISDNLRSIPSSIDGLKPTQRKIIHTL----LNHSKQEYKVSSLSGLVTTYAQYH-H 410 Query: 81 GDSAVYDTIVRMAQPF--SLRYMLVDGQGNFG--SIDGDSAAAMRYTEIRLAKIAHELMA 136 G+ ++ T+V MAQ F S L+ G FG S+ G AA RY +L+ + +L Sbjct: 411 GEQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYISTKLSSLTTKLFN 470 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 + + T++++D +G P +P +L+NG+ GI G +T +P N E+ Sbjct: 471 EDDLHTLNYLDE-EGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVPNFNPREICQQIKR 529 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 + E+ E +P T +I G +G + Sbjct: 530 KLRGEEFE-----ELVPWYKGFTGSITAGTNQYIA-----KGSFI------------QHK 567 Query: 257 ETIIVHEIPYQVN---KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG 313 + + EIP + + I+ E+ + K I +++ + + ++ Sbjct: 568 NHLYITEIPPKKSVKEYQAFIQSKMEVAEGKSEPEILDMKEYHAGNKVCFELK----VTD 623 Query: 314 EVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 EV+ ++ +LQ + + + L + + + N+ +I+ F + R + R + L Sbjct: 624 EVLKQDIEKYFKLQTTIAMTNLVLFNEKGLLKRYSNVSEILDEFYQTRIKFYQLRKEYLL 683 Query: 371 RKARDRAHILEALAVALA-NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 K ++ ++++ + + ID I+L ++ + Sbjct: 684 SKYQNELELVQSKSKFIEGMIDNSIQL---------------RGLKKMEMCKKLQSLGFK 728 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 ++ E ++ +D E+Q +L + + + + + K+L DQI L Sbjct: 729 GISKMEKVKSTRISKDFDADNLEKQYDYLLSMPMWNFSEEKITAFKQQIKQLQDQITALN 788 Query: 490 RILGSADRLMEVIREELEL 508 + + ++ +E Sbjct: 789 K--KTPQQIWSEDLDEFLE 805 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 155/385 (40%), Gaps = 50/385 (12%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 + + + + ++ V R++P + DG KP R +LY G + K +++ Sbjct: 813 QIPYSDFIDKDLIFFSN-VDNDRSIPSMIDGFKPSQRMILYCCFKRGRHSKE--VKVSQL 869 Query: 70 VGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYT 123 G V YH HG++++ I+ MAQ F S ++ GNFG G A+ RY Sbjct: 870 AGYVSENTDYH-HGEASLQGAIIGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYI 928 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEK-IPDVMPTKIPNLLVNGSSGIAVGMATNI 182 L IA+ + + + E + + NYD K PDV IP ++NGS GI G + N+ Sbjct: 929 FTELHPIANYIFREEDDEILKY--NYDDDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNV 986 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHN +V+ I+++D P P NG +G E K I Sbjct: 987 PPHNPLDVVANLKRLINEKD----------PVDMLP---WYNGFKGTIEKNPKATNKYII 1033 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 R + + I + +IP + +E + ++ + DG Sbjct: 1034 RGKYCI------DGNKIHIEDIP---------------IVNGWIEPYESKMEQKEDDGQE 1072 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 + ++ + VG L+ + TQ +NM K ++ D++ F +R E+ Sbjct: 1073 LQ-KLYKTGVGN--LDKFLNMTQSLSVTNLNMFNSKGKMTKYNSISDVLYEFYEYRLEMY 1129 Query: 363 TRRTIFELRKARDRAHILEALAVAL 387 +R F K ++ I + Sbjct: 1130 QKRKEFFFLKLQNDLDISTYKVKFI 1154 >UniRef50_P07065 DNA topoisomerase medium subunit n=8 Tax=T4-like viruses RepID=TOP5_BPT4 Length = 442 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 98/428 (22%), Positives = 172/428 (40%), Gaps = 43/428 (10%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 ++ +++ + + L YAM + RA+P++ DG KPV R V+ L + K Sbjct: 2 QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A + G V + HG+++ D MA ++ + L+DGQGNFGS AAA RY R Sbjct: 62 ASIAGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFAR 121 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPD-VMPTKIPNLLVNGSSGIAVGMATNIPPH 185 ++K + + D ++ + E IP IP +L+NG SGIA G AT I PH Sbjct: 122 VSKNFYNVYKD-----TEYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPH 176 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRA 244 +++ V L + + ++ + P+F + I+G+ I Y+ Sbjct: 177 SVSSVKKAVLQALQGKKVT----KPKVEFPEFRGEVVEIDGQYEIRGTYKF--------- 223 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 T R + + EIPY+ ++ + KI + ++ K G D + G Sbjct: 224 ---------TSRTQMHITEIPYKYDRETYVSKILDPLENK---GFITWDDACGEHGFGFK 271 Query: 305 IEVKRDA----VGEVVLNNLYSQTQLQVSFGINMVALHHGQP--KIMNLKDIIAAFVRHR 358 ++ +++ E + L N+ ++ N+ D+I FV R Sbjct: 272 VKFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVR 331 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPII--ELIRHAPTPAEAKTALVANPWQ 416 + V +R K ++ I +I E++ T E L Sbjct: 332 KTYVQKRID---NKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMY 388 Query: 417 LGNVAAML 424 V ++ Sbjct: 389 SSYVDKLV 396 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 95/496 (19%), Positives = 189/496 (38%), Gaps = 72/496 (14%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D +I +NI + + +++ R+LP + DGLK R+V++ + K Sbjct: 683 DSPNKILQLNISTFINEELIKFSIE-DCKRSLPHLIDGLKESQRKVIFGLKQWN---GKN 738 Query: 63 YKKSARVVGDVIGKY-HPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ V K + HG+ ++DTI++MAQ F + L++ G FG+ G A Sbjct: 739 NIKVAQLGAFVAQKTDYKHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLSGGKDA 798 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY + I +++ + +++ DG P IP + +NGS G+ G Sbjct: 799 ASPRYIFVNQPPILNKIFRPEDDPILNY--TLDG---EPVFYAPVIPLICINGSVGVGTG 853 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 + NIP N +E+I+G +I+ + + + ++ P G G E +GR Sbjct: 854 FSCNIPMFNPSEIIDGLKQWINMREQGEKYVFKYKP--------WYKGFTGKIEKNGSGR 905 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 YI + G V E+P + + E + + ++ + + Sbjct: 906 ---YISYGTLSNEASNNGMYQYTVSELPINMWTDKFKEMCDQYRESNLIKTCDNYSEVTT 962 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH--GQPKIMNLKDIIAAFV 355 + K + E+ + NL ++ + S NMV H K L I+ F Sbjct: 963 -------VNFKISSEHELTIENLKLRSYIHTS---NMVMFDHEGKIHKYETLNGIMQRFC 1012 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALAN-IDPIIELIRHAPTPAEAKTALVANP 414 + R ++ +R + L+K I E + + ++ I+++ Sbjct: 1013 KERIKIYEKRRQYMLQKLNKSLTISENKKRFMEDVMNQKIKIL----------------- 1055 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 + + + + + Y E + +L++ + +KL Sbjct: 1056 -----------------LQEDEVVHQQLLDMNYYKDDEGEFDYLLNMNIGGFRKKNVDKL 1098 Query: 475 LDEYKELLDQIAELLR 490 + + +L I Sbjct: 1099 ISKIDDLKKDIMWYTN 1114 >UniRef50_A2I985 DNA gyrase subunit A (Fragment) n=5 Tax=Campylobacterales RepID=A2I985_9PROT Length = 262 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 109/262 (41%), Positives = 168/262 (64%), Gaps = 3/262 (1%) Query: 531 EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHI 590 EDLI E +VVT++H GYVK P+ YE Q+RGGKGK A ++DFI+R V+NTHD + Sbjct: 1 EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60 Query: 591 LCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 650 + ++ G++Y +KVY++PE +R A+G+ +VNL+ L DE+I AI+P +F+E + T Sbjct: 61 MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESKSLVFFT 120 Query: 651 ANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKES 709 NG +K+T L EF+ +R+ G AI L D DE++ + + + +M+F++ G+ +RF+ Sbjct: 121 RNGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180 Query: 710 SVRAMGCNTTGVRGIRLG-EGDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRA 767 R G +T GVRGI+ + D VV V + ILT ++ G GKRT + EY +RA Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDIVVDADVIDNEEQEILTVSEKGIGKRTTIEEYRLTNRA 240 Query: 768 TKGVISIKVTERNGLVVGAVQV 789 GVI++K++ + G +VG V V Sbjct: 241 GSGVIAMKLSPKTGNIVGEVLV 262 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 10/222 (4%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFS 698 V T NG VK+ + + R + GKVA+ D D + +++ D +M + Sbjct: 5 PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64 Query: 699 AEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVP---RGDGAILTATQNGY 752 G++ K + G V I L +K++++I +++ T+NG Sbjct: 65 NMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESKSLVFFTRNGV 124 Query: 753 GKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 812 KRT++ E+ + GV +I + + + +V + IM+ T G +R + + Sbjct: 125 IKRTSLNEFSNIR--SNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEKT 182 Query: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854 GR+T+GV I+ D ++V V + ++E L + Sbjct: 183 RDQGRSTRGVRGIKFKIDTDIVVDADVIDNEEQEILTVSEKG 224 Score = 95.3 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 98/251 (39%), Gaps = 18/251 (7%) Query: 590 ILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMA 649 ++ + G V + + RG +G+ V D+ I + + Sbjct: 10 VVTITHNGYVKRVPIKSYERQKRGGKGKVAVT---THDDDFIERFFVSNTHD---TLMFV 63 Query: 650 TANG-----TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEG 701 T G V K A I L ++++ + T DE ++ F+ G Sbjct: 64 TNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESKSLVFFTRNG 123 Query: 702 KVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAE 760 + R + + + GVR I L + D++V+ + I+ T G R + + Sbjct: 124 VIKRTSLNEFSNI--RSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181 Query: 761 YPTKSRATKGVISIKVTERNGLVVGAVQVDDCD-QIMMITDAGTLVRTRVSEISIVGRNT 819 + R+T+GV IK +VV A +D+ + +I+ +++ G RT + E + R Sbjct: 182 TRDQGRSTRGVRGIKFKIDTDIVVDADVIDNEEQEILTVSEKGIGKRTTIEEYRLTNRAG 241 Query: 820 QGVILIRTAED 830 GVI ++ + Sbjct: 242 SGVIAMKLSPK 252 Score = 63.0 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 4/116 (3%) Query: 736 IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 795 + + ++T T NGY KR + Y + R KG +++ + + + + D + Sbjct: 2 DLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHD-DDFIERFFVSNTHDTL 60 Query: 796 MMITDAGTLVRTRVSEISIVGRNTQG---VILIRTAEDENVVGLQRVAEPVDEEDL 848 M +T+ G L +V +I R +G V LI DE ++ + + + + L Sbjct: 61 MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESKSL 116 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 102/495 (20%), Positives = 186/495 (37%), Gaps = 61/495 (12%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 E + ++Y+ + + R+LP+V DGLKP R+VL+ M + + + ++ Sbjct: 714 NQKTFSEFVNEELVEYSQ-LDLRRSLPNVVDGLKPSQRKVLFTMFGR---YERGEIRVSQ 769 Query: 69 VVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRY 122 + G V YH HG+ ++ +TIVR+AQ F S L+ G FG+ G+ A+ RY Sbjct: 770 LAGAVSQYCGYH-HGEESLVNTIVRLAQDFVGSNNLNLLLPLGQFGTRLSGGEDVASARY 828 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 L+ +A + + + + + + P+ IP +L+NG+ GI G AT I Sbjct: 829 IYTSLSPLARAIFPHPDDKVLKNLVE-ENALVEPEWYCPIIPMILINGAEGIGTGWATKI 887 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 P +VI+ ID L + +P +G Y T + I Sbjct: 888 LPRCPRQVISNAQRLIDGRP-----LQDMLPH--------FRKFQGTI--YETAPRQYSI 932 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 + R I+ E+P + + EK+ + + + IS + + + Sbjct: 933 SGKVSYRRLKSGLRA--IITELPTGIWNNKYKEKVLDSAIKNGI--ISNYEELHTESNVH 988 Query: 303 IVIEV--KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVRH 357 ++ V K + + L +L+ N + L + K + ++I F Sbjct: 989 FILHVIDKPLLSDKKQIKALNRLLKLRSVASENSMILFDEKNVLQKYDSTREIFQEFFEV 1048 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPII--ELIRHAPTPAEAKTALVANPW 415 RR+ R EL + +E ++ II E+I AE L + Sbjct: 1049 RRQKYIERRECELVIMEGKLKFIENQVRF---VNAIINGEIIIKKKNRAEIIAQLAEKGF 1105 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 + A G+ +LD+ L +L+ E L Sbjct: 1106 DSNPMKAKNATDGNCNPPDFA--------------------YLLDMPLCRLSNEEILVLQ 1145 Query: 476 DEYKELLDQIAELLR 490 ++ +L ++ L Sbjct: 1146 EKRSQLWERFKSLKS 1160 >UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK7_9CAUD Length = 514 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 117/546 (21%), Positives = 221/546 (40%), Gaps = 76/546 (13%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 R + ++++ + + Y +V + R++PD+ DGLKPV RR+L++ + + ++ Sbjct: 18 DRHVVDESLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQVCRT---QFE 74 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+ G +G YHPHG+SA+Y V M Q S + G+GNFGS+ D AAA RYT Sbjct: 75 KSARLTGHCMGAYHPHGNSAIYSAAVNMVQHPS---PTLLGKGNFGSMT-DGAAAERYTN 130 Query: 125 IRLAKIAHELMAD--LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 +RL+ + ET FV NYD + P +P ++PN+L+NG GI VG+ T + Sbjct: 131 VRLSHYGQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKL 190 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 P V+ E + + + ++ + + + G + Sbjct: 191 PTFTPESVLEVLNRMFKGEKLQAVDFAKTLKYHHKWGGQLVRSKENQAQWKQMFVGSM-- 248 Query: 243 RARAEVE--VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 A + E +D + + + P N ++K+ + + + + K Sbjct: 249 -ANLQFEAVLDLDRDHKRMTISSWPPGTNLETFMKKVRAMPECHKC--------FNSKGT 299 Query: 301 MRIVIEVKRDAV---GEVVLNNLYSQTQLQVSFGINMV----ALHHGQPKI------MNL 347 IE K + + + T + +F IN+ G +++ Sbjct: 300 TTYQIECKPGFNYDQFDKFVEKVRKATMQRQAFKINVTRREAKTVDGVTTFKTEFLALSV 359 Query: 348 KDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAK 407 D+I + R R + + + ++K + L A+ +D I + +R + P + Sbjct: 360 PDLILQWCRMRVALELKSLAYRIKKQEAAIAYSKLLIYAVDKLDLIFKALRQS-DPDASL 418 Query: 408 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT 467 L+ +T +QA+ ILDL+++KL+ Sbjct: 419 QKLL-------------------------------------KITAEQAKQILDLQVRKLS 441 Query: 468 GLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD 527 L+ KL K ++ +L + +L V++ R ++ ++ Sbjct: 442 KLDQSKLKGTLKTQEQELKQLQTWQAKPKAQ---VLLDLAAVQQALDKDRNFKLKESTQK 498 Query: 528 INLEDL 533 + + DL Sbjct: 499 LTVCDL 504 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYR... 1040 0.0 UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYR... 1018 0.0 UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A... 986 0.0 UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms... 980 0.0 UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multac... 980 0.0 UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organism... 977 0.0 UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8C... 971 0.0 UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GY... 969 0.0 UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepI... 969 0.0 UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH... 968 0.0 UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8... 964 0.0 UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYR... 959 0.0 UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms... 958 0.0 UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber... 958 0.0 UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio ... 958 0.0 UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GY... 958 0.0 UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0L... 954 0.0 UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organism... 950 0.0 UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria Rep... 949 0.0 UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms... 949 0.0 UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachl... 943 0.0 UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria Rep... 942 0.0 UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostri... 941 0.0 UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V... 940 0.0 UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2R... 932 0.0 UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GY... 932 0.0 UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYR... 930 0.0 UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincenti... 929 0.0 UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacteriu... 920 0.0 UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6... 920 0.0 UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepI... 919 0.0 UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X... 918 0.0 UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadens... 917 0.0 UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA... 915 0.0 UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6... 911 0.0 UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae R... 911 0.0 UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ... 910 0.0 UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphapr... 910 0.0 UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=... 908 0.0 UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneo... 908 0.0 UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum fer... 903 0.0 UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthro... 899 0.0 UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYR... 898 0.0 UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia Re... 897 0.0 UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales ... 896 0.0 UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia Re... 895 0.0 UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepI... 893 0.0 UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0... 887 0.0 UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GY... 887 0.0 UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9R... 886 0.0 UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio p... 886 0.0 UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succino... 885 0.0 UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C... 885 0.0 UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondria... 884 0.0 UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacter... 882 0.0 UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagiba... 881 0.0 UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter pis... 880 0.0 UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepI... 875 0.0 UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6B... 873 0.0 UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepI... 872 0.0 UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium fer... 868 0.0 UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C... 863 0.0 UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus mo... 860 0.0 UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 T... 860 0.0 UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytopla... 859 0.0 UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon... 855 0.0 UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicut... 854 0.0 UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneum... 851 0.0 UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus... 848 0.0 UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 845 0.0 UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chr... 842 0.0 UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorfe... 840 0.0 UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5R... 839 0.0 UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium... 839 0.0 UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=G... 837 0.0 UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obsc... 836 0.0 UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5... 835 0.0 UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepI... 834 0.0 UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cy... 831 0.0 UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix ore... 828 0.0 UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae ... 827 0.0 UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio s... 825 0.0 UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae Rep... 823 0.0 UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 822 0.0 UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibaci... 813 0.0 UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyan... 806 0.0 UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobact... 806 0.0 UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A ... 801 0.0 UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium ex... 799 0.0 UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales R... 796 0.0 UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria ... 794 0.0 UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarin... 783 0.0 UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipel... 776 0.0 UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q... 775 0.0 UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicut... 772 0.0 UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q... 770 0.0 UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 764 0.0 UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID... 763 0.0 UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipel... 761 0.0 UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter ... 761 0.0 UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholepl... 760 0.0 UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain pr... 756 0.0 UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms Rep... 754 0.0 UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=... 749 0.0 UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae R... 749 0.0 UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. ... 748 0.0 UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales... 744 0.0 UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcu... 740 0.0 UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetoco... 737 0.0 UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinoba... 731 0.0 UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myx... 730 0.0 UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=... 727 0.0 UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firm... 724 0.0 UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms Rep... 722 0.0 UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma Re... 717 0.0 UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphapr... 717 0.0 UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Acti... 713 0.0 UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicut... 711 0.0 UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundi... 709 0.0 UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcac... 707 0.0 UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family pr... 707 0.0 UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rho... 705 0.0 UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pu... 704 0.0 UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula balt... 702 0.0 UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphapr... 702 0.0 UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=... 701 0.0 UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n... 701 0.0 UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma ar... 700 0.0 UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae R... 697 0.0 UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria R... 697 0.0 UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z... 694 0.0 UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Pla... 690 0.0 UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsi... 686 0.0 UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis... 684 0.0 UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=unculture... 684 0.0 UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaprot... 681 0.0 UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Trophe... 679 0.0 UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaprot... 679 0.0 UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mo... 678 0.0 UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteoba... 677 0.0 UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID... 674 0.0 UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma homi... 672 0.0 UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobia... 667 0.0 UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaprot... 665 0.0 UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphapro... 664 0.0 UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma sy... 663 0.0 UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma co... 660 0.0 UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria... 660 0.0 UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteoba... 658 0.0 UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hy... 656 0.0 UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma... 654 0.0 UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=P... 654 0.0 UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Vari... 645 0.0 UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria... 642 0.0 UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacteri... 640 0.0 UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaprote... 629 e-178 UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammapro... 627 e-178 UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 615 e-174 UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostri... 608 e-172 UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria... 606 e-171 UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacteri... 591 e-167 UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H... 589 e-166 UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular ... 587 e-166 UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial,... 576 e-162 UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clos... 571 e-161 UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms ... 553 e-156 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 530 e-149 UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=M... 521 e-146 UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodiu... 494 e-138 UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=... 493 e-137 UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria... 432 e-119 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 431 e-119 UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodiu... 424 e-117 UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from dire... 419 e-115 UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibr... 418 e-115 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 418 e-115 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 417 e-115 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 417 e-114 UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opit... 415 e-114 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 414 e-114 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 412 e-113 UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 410 e-113 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 407 e-111 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 406 e-111 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 406 e-111 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 405 e-111 UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella... 405 e-111 UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria... 404 e-111 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 403 e-110 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 401 e-110 UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JA... 401 e-110 UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bact... 397 e-108 UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chth... 395 e-108 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 394 e-108 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 394 e-108 UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bac... 393 e-107 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 393 e-107 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 392 e-107 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 390 e-107 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 390 e-106 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 390 e-106 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 389 e-106 UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentispha... 388 e-106 UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate di... 388 e-106 UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Tr... 388 e-106 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 387 e-105 UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia ... 382 e-104 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 380 e-103 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 378 e-103 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 378 e-103 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 377 e-103 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 377 e-102 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 373 e-101 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 370 e-100 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 368 e-100 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 366 2e-99 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 365 6e-99 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 363 2e-98 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 363 2e-98 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 363 2e-98 UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=D... 362 3e-98 UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 357 8e-97 UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacter... 352 3e-95 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 351 5e-95 UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchi... 351 8e-95 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 350 2e-94 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 348 7e-94 UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringien... 347 1e-93 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 344 7e-93 UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomat... 343 3e-92 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 341 5e-92 UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS11... 341 6e-92 UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_... 341 8e-92 UniRef50_A4ECR3 Putative uncharacterized protein n=1 Tax=Collins... 340 1e-91 UniRef50_C0X5K0 Possible DNA topoisomerase IV subunit A (Fragmen... 340 2e-91 UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=... 330 2e-88 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 327 1e-87 UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginali... 327 1e-87 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 327 1e-87 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 326 2e-87 UniRef50_C3X0L8 DNA gyrase subunit A (Fragment) n=1 Tax=Fusobact... 325 3e-87 UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2... 324 9e-87 UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 323 2e-86 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 322 4e-86 UniRef50_Q5CB96 ATP-dependent Clp protease, ATPase subunit n=1 T... 319 3e-85 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 318 4e-85 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 316 3e-84 UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase... 313 2e-83 UniRef50_Q6U961 Topoisomerase II medium subunit n=3 Tax=unclassi... 313 3e-83 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 306 2e-81 Sequences not found previously or not previously below threshold: >UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYRA_ERWCA Length = 878 Score = 1040 bits (2689), Expect = 0.0, Method: Composition-based stats. Identities = 740/857 (86%), Positives = 795/857 (92%), Gaps = 1/857 (0%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM+VLGNDWN Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVGDVIGKYHPHGDSAVY+TIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIR++KIAHEL+ADLEKETVDFV NYDGTE+IPDVMPT+IPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNLTEV+NGCLAYIDDE+IS+EGLMEHI GPDFPTAAIINGRRGIEEAYRTGRGK+ Sbjct: 181 NIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRARAEVE DAKTGRETIIVHEIPYQVNKARLIEKIAELVK+KR+EGISALRDESDKDG Sbjct: 241 YIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+KRDAVGEVVLNNLYSQTQLQ SFGINMVALH GQPKIM LKDI+ AFVRHRRE Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRRE 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVTRRTIFELRKARDRAHILE LA+ALANIDPIIELIR A +PAEAK +L+A W+LG+V Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSV 420 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 A MLERAGDDAARPEWLEPEFG+RDG YYLTEQQAQAILDLRLQKLTG+EHEKLLDEYKE Sbjct: 421 ATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKE 480 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 LL +IAELL IL S +RLMEVIREELE + Q+ D+RRTEITAN+ADIN+EDLI QEDVV Sbjct: 481 LLAEIAELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLINQEDVV 540 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLSHQGYVKYQPLS+YEAQRRGGKGKSAARIKEEDFIDRLLVANTHD ILCFSSRGR+Y Sbjct: 541 VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 600 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 MKVYQLPEA+RGARGRPIVNLLPLE DERITAILPV E+EEG +FMATA+GTVKKT L Sbjct: 601 WMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGTVKKTAL 660 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 TEF+R +G +A+ L +GDELIGVDLT G DE MLFSAEGKVVRF E +VR+MG TG Sbjct: 661 TEFSR-HVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATG 719 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 VRGI L D+VVSLI+PRG+G ILT TQNG+GKRTAV+EYPTKSRATKGVISIKV+ERN Sbjct: 720 VRGINLQGEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN 779 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G VVGAVQVD DQIMMITDAGTLVRTRVSE+SIVGRNTQGV LIRTAEDE+VVGLQRVA Sbjct: 780 GKVVGAVQVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVA 839 Query: 841 EPVDEEDLDTIDGSAAE 857 EPV++E+LD + E Sbjct: 840 EPVEDEELDGVVKVEGE 856 >UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYRA_PSEAE Length = 923 Score = 1018 bits (2633), Expect = 0.0, Method: Composition-based stats. Identities = 583/919 (63%), Positives = 719/919 (78%), Gaps = 46/919 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +LA+EI PVNIE+ELK SYLDYAMSVIVGRALPD RDGLKPVHRRVLYAM+ LGNDWN Sbjct: 1 MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVGDVIGKYHPHGD+AVYDTIVRMAQPFSLRYMLVDGQGNFGS+DGD+AAAM Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R+AK+AHEL+ADLEKETVD+V NYDGTE+IP VMPTKIPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVI+GCLA +D+ D++++ LM++IPGPDFPTA IINGR GI EAYRTGRG++ Sbjct: 181 NIPPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRI 240 Query: 241 YIRARAEVEVDAKTG-RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 YIRARA VE K G RE II+ E+PYQ+NKARLIEKIAELVKEK++EGIS LRDESDKD Sbjct: 241 YIRARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKD 300 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMR+VIE++R VGEVVLNNLY+QTQLQ FGIN+VAL GQP+ +NLKD++ FVRHRR Sbjct: 301 GMRVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRR 360 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVVTRRT++ELRKAR+R HILE AVAL+NIDP+IELI+ +PTPAEAK L+A W+ Sbjct: 361 EVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSA 420 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 V AM+ERAG DA RPE L+P++G+RDG YYL+ +QAQAIL+LRL +LTGLEHEKLL EY+ Sbjct: 421 VEAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQ 480 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 E+L+ I EL+RIL + RLMEVIREELE V+ +FGD RRTEI A+ D+ + DLIT+ED Sbjct: 481 EILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDR 540 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 VVT+SH GY K QPL+ Y+AQRRGGKGKSA +K+ED+I+ LLVAN+H +L FSS+G+V Sbjct: 541 VVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT--------------------- 638 Y ++ +++PEA+R ARGRP+VNLLPL++ ERITA+L + Sbjct: 601 YWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAV 660 Query: 639 ----------------------EFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL 676 G +FMATA GTVKKT L +F+R R++G +A+KL Sbjct: 661 LEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKL 720 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI 736 +GD LI +T G EVMLFS+ GKV+RF ES VR MG N GVRG+RLG+G +++S++ Sbjct: 721 EEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQLISML 780 Query: 737 VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIM 796 +P ILTA++ G+GKRT ++++P + R +GVI++ ERNG ++ AVQV + ++IM Sbjct: 781 IPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIM 840 Query: 797 MITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 +I+D GTLVRTRV E+S+ GRNTQGV LI+ A DE +VGL+RV EP +D D Sbjct: 841 LISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDL--PEGE 898 Query: 857 EGDDEIAPEVDVDDEPEEE 875 E + + + + EP E Sbjct: 899 EAAESLGESAESESEPAAE 917 >UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A n=17 Tax=cellular organisms RepID=Q0W7S4_UNCMA Length = 826 Score = 986 bits (2548), Expect = 0.0, Method: Composition-based stats. Identities = 431/844 (51%), Positives = 587/844 (69%), Gaps = 37/844 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + PV IEEE+K SY+DYAMSVIVGRALPDVRDGLKPVHRR LY M LGN +K YKK Sbjct: 19 ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVGDV+GKYHPHGD+A+YDTIVRMAQ FSLRY LVDGQGNFGSIDGD AAAMRYTE+ Sbjct: 79 SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL +IA E++ADL+KETVDF N+D T K P V+P ++PNLL+NGSSGIAVGMATNIPPH Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+++G +A ID+ +I L+ ++ GPDFPTA I G+ GI+EAY TGRG + +RA+ Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAK 258 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 AE+ + G+ +IIV EIPY VNKARLIE IA+LVK+K++EGIS LRDESD+DGMRIVI Sbjct: 259 AEIVDE--NGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVI 316 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K+ A V+LN L+ TQ++ +FG+N +AL P ++LK+ I F++HR+EVVTRR Sbjct: 317 ELKKAANANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRR 376 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + FEL+KA+ R HIL L +AL NID + +IR + EAK L+ Sbjct: 377 SQFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEK------------ 424 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 Y L+++Q++AILD+RL +LT LE +K+ DE +L+ +I Sbjct: 425 ----------------------YGLSDEQSRAILDMRLARLTALERQKIDDERADLIKEI 462 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 A L +L S ++++I+ EL ++ ++GD+RRT+I ++ +I EDLI E+VVVT+S+ Sbjct: 463 AHLNEVLASPQMVLDIIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVENVVVTISN 522 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K P+ Y QRRGG G KEEDF+ L VA+THD+IL FS++G+VYS+KVY Sbjct: 523 TGYIKRMPVDTYRTQRRGGVGIVGMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVY 582 Query: 606 QLPE-ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 ++P A+R ARG+ I+NL+ +E E I A++P+ F++ + M T GT+KKT L+ F Sbjct: 583 EIPPAASRQARGKAIINLINIEPGEAINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQ 642 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +R+ G +AI L GDELI V +T+G EV++ + GK RF ES VR MG GV GI Sbjct: 643 NIRSTGIIAIGLESGDELISVKMTNGSQEVLIATRNGKCNRFSESEVRTMGRPAMGVIGI 702 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 RL E DKV+++ + ++LT +NG+GKRT + EY R +G+I+IK T RNG VV Sbjct: 703 RLTENDKVIAMEIVSPGQSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVV 762 Query: 785 GAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 + V DQI++ + G + R V++I +GRNTQGV +++ +++VV + R+ Sbjct: 763 AVISVMPDDQIVIASKEGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKK 822 Query: 845 EEDL 848 E+++ Sbjct: 823 EDEI 826 >UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms RepID=GYRA_BACSU Length = 821 Score = 980 bits (2533), Expect = 0.0, Method: Composition-based stats. Identities = 439/839 (52%), Positives = 596/839 (71%), Gaps = 36/839 (4%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 ++ +NI +E+++S+LDYAMSVIV RALPDVRDGLKPVHRR+LYAMN LG +K Sbjct: 3 EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 YKKSAR+VG+VIGKYHPHGDSAVY+++VRMAQ F+ RYMLVDG GNFGS+DGDSAAAMR Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE R++KI+ E++ D+ K+T+D+ DNYDG+E+ P VMP++ PNLLVNG++GIAVGMATN Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPH L E+I+G LA ++ DI+I LME IPGPDFPTA I GR GI +AY +GRG + Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 IRA+AE+E + +G+E IIV E+PYQVNKA+LIEKIA+LV++K++EGI+ LRDESD+ GM Sbjct: 243 IRAKAEIEQTS-SGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGM 301 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RIVIE++RDA V+LNNLY QT LQ SFGIN++AL GQPK++ LK + ++ H++ V Sbjct: 302 RIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVV 361 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 + RRT +ELRKA RAHILE L VAL ++D +I LIR++ T A+T L+ Sbjct: 362 IRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ-------- 413 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + LTE+QAQAILD+RLQ+LTGLE EK+ +EY+ L Sbjct: 414 --------------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSL 447 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVV 540 + IAEL IL + +++E+IREEL ++E+F D+RRTEI + + I EDLI +E++V Sbjct: 448 VKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIV 507 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTL+H GYVK P S Y +Q+RGGKG E+DF++ L+ +THD IL FS++G+VY Sbjct: 508 VTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVY 567 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 K Y++PE R A+G PI+NLL +E+ E I AI+PVTEF + +F T +G K+T L Sbjct: 568 RAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSL 627 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 ++F +R G +A+ L + DEL+GV LT G ++++ + G ++RF E+ VR MG G Sbjct: 628 SQFANIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAG 687 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+GI L + D VV + + + +L T+ GYGKRT EY T+SR KG+ + K+TE N Sbjct: 688 VKGITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN 747 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 G +V + +M+IT +G L+R +++ISI GR TQGV LIR AE+E+V + V Sbjct: 748 GQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806 >UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLW4_9FIRM Length = 808 Score = 980 bits (2533), Expect = 0.0, Method: Composition-based stats. Identities = 436/841 (51%), Positives = 587/841 (69%), Gaps = 35/841 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +I PVN+E E+K+SY+DYAMSVIV RALPDVRDGLKPVHRR+LYAM G N Sbjct: 1 MDFGQGKIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSAR+VG+V+GKYHPHGDS+VYD IVRMAQ FS+RYML DG GNFGS+DGD AAAM Sbjct: 61 KPYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R++KIA ++ D++KETVDF NYD + K P+V+P K P LLVNG+SGIAVGMAT Sbjct: 121 RYTEVRMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHN+ EVI+G L ID D +I+ LM+ I GPDFPTA +I G+ GI +AY TGRG + Sbjct: 181 NIPPHNMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA A +E + G+ IIV E+PYQVNKARL+EKIA+LV++K++EGI+AL DESD+ G Sbjct: 241 KMRANARIETLS-NGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVI+++RDA V+LN LY TQLQ SFG+ M+AL G+PKI+NLK+++ ++ H+ + Sbjct: 300 MRIVIDLRRDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQED 359 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+TRRT ++L+KA RAHILE L +AL ++D +I IR + T A+ AL++ Sbjct: 360 VITRRTRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISG------- 412 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + L+E+QAQAILDLRLQ+LTGLE EK+ +EY+E Sbjct: 413 ---------------------------FKLSEKQAQAILDLRLQRLTGLEREKIEEEYQE 445 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 +L I E IL R++ +I++EL+ V+ +FGD RRT +T ++++I++EDLI +EDVV Sbjct: 446 VLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDARRTRLTVDTSEIDVEDLIAEEDVV 505 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +TL+H Y+K L Y Q RGGKG KE+DF++ LL+ TH IL F++RGRVY Sbjct: 506 ITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVY 565 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +K Y++ EA+R A+G I+NLL LE+DE+ITA++ V F +FMAT G VKKT L Sbjct: 566 HLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQVKGFNPDAYLFMATKKGIVKKTSL 625 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 EF L G AI L D DELIGV T GE +++L + G + F E VRAMG G Sbjct: 626 VEFKNLHKGGLNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAMGRAARG 685 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+GI L +GD+V+ + + +LT T GYGKRT +EY ++R KG+I++KVTE+ Sbjct: 686 VKGISLNDGDEVIGMDTLSPNAEVLTVTAEGYGKRTETSEYRAQNRGGKGLINLKVTEKT 745 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G V+G V ++M+IT G ++RT +S+IS++ RNTQGV L+ T E++ V + + Sbjct: 746 GDVIGLRVVHPDQELMLITTEGIVIRTNISDISVISRNTQGVKLMSTGENDIVASMAVMD 805 Query: 841 E 841 + Sbjct: 806 Q 806 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 100/261 (38%), Gaps = 16/261 (6%) Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 + GR+ ++ +L G L ++ E I E V T Sbjct: 456 ILADEGRILAIIKDELKAVKAKF-GDARRTRLTVDTSE----IDVEDLIAEEDVVITLTH 510 Query: 652 NGTVKKTVLTEFNRLRTAGKVA--IKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKES 709 N +K+ L + R GK + + D + + +T+ ++ F+ G+V K Sbjct: 511 NNYIKRMALDTYRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVYHLKAY 570 Query: 710 SVRAMGCNTTGVRGIRL---GEGDKVVSLIVP---RGDGAILTATQNGYGKRTAVAEYPT 763 + G I L + +K+ ++I D + AT+ G K+T++ E+ Sbjct: 571 EIAEASRAAKGTAIINLLQLEKDEKITAVIQVKGFNPDAYLFMATKKGIVKKTSLVEFKN 630 Query: 764 KSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVI 823 + I++ + + ++G D +++ T G + ++ +GR +GV Sbjct: 631 LHKGGLNAINL---DDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAMGRAARGVK 687 Query: 824 LIRTAEDENVVGLQRVAEPVD 844 I + + V+G+ ++ + Sbjct: 688 GISLNDGDEVIGMDTLSPNAE 708 >UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organisms RepID=GYRA_STAES Length = 893 Score = 977 bits (2527), Expect = 0.0, Method: Composition-based stats. Identities = 426/879 (48%), Positives = 594/879 (67%), Gaps = 41/879 (4%) Query: 1 MSDLAR-EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDW 59 M++L + I NI E++ S+LDYAMSVIV RALPDVRDGLKPVHRR+LY +N G Sbjct: 1 MAELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 60 Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 119 +K YKKSAR+VGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDGQGNFGS+DGD AAA Sbjct: 61 DKPYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAA 120 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 MRYTE R+ KI EL+ D+ K+T+DF+DNYDG E+ P V+P + PNLLVNG++GIAVGMA Sbjct: 121 MRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMA 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNLTEVI+G L+ + DI+I LME I GPDFPTA ++ G+ GI AY TGRG Sbjct: 181 TNIPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGS 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-K 298 + +R+RAE+E GR+ I+V EIP+QVNKAR+IEKIAELV++K+++GI+ LRDE+ + Sbjct: 241 IQMRSRAEIEERG-GGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLR 299 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 G+R+VI+V++DA V+LNNLY QT LQ SFG+NM+AL +G+PK++NLK+ + ++ H+ Sbjct: 300 TGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQ 359 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 + VV RRT + L+KARDRAHILE L +AL +ID II IR + T A +L Sbjct: 360 KTVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER----- 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + LTE+QAQAILD+RL++LTGLE +K+ EY Sbjct: 415 -----------------------------FKLTERQAQAILDMRLRRLTGLERDKIESEY 445 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQE 537 ELL+ I EL IL + L++++R+EL ++E+FGD+RRTEI D+ EDLI +E Sbjct: 446 NELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEE 505 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 +V+TLSH Y+K P+S Y +Q RGG+G +EDF+ +L+ +THDH+L F+++G Sbjct: 506 QIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKG 565 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVK 656 RVY +K Y++PE +R ++G PI+N + LE DE I+ ++ V + E E + AT G VK Sbjct: 566 RVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVKDLESEEDYLVFATKQGIVK 625 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 ++ L+ F+R+ GK+AI + DELI V LT+G +++++ +A ++RF ES++R +G Sbjct: 626 RSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLGR 685 Query: 717 NTTGVRGIRLGEGDKVVSLIVPR--GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISI 774 GV+GI L EGD VV L V + +L T+NGYGKRT V+EY +R KG+ + Sbjct: 686 TAAGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTA 745 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 +TERNG +V V + +M++T+AG ++R V +IS GR QGV L++ + + V Sbjct: 746 TITERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVS 805 Query: 835 GLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPE 873 + +V E D E+ + + EV D P Sbjct: 806 TVAKVNEEDDNEENADEAQQSTTTETADVEEVVDDQTPG 844 >UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8CZP0_HALOH Length = 816 Score = 971 bits (2510), Expect = 0.0, Method: Composition-based stats. Identities = 427/852 (50%), Positives = 596/852 (69%), Gaps = 38/852 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M ++ V+IE E+K +YLDYAMSVIV RALPDVRDGLKPV RR+LYA++ LG N Sbjct: 3 MDINNGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPN 62 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K +KKSARVVG+V+GKYHPHGD+AVYDT+VRMAQ FS RY LVDG GNFGSIDGDSAAAM Sbjct: 63 KPHKKSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAM 122 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R+A++ EL+ D++K TVDF N+D + + P+V+P ++PNLL+NG SGIAVGM+T Sbjct: 123 RYTEVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMST 182 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVI+G +A ID+ D+ ++ LM+ I GPDFPT II G+ I +AY+TGRG++ Sbjct: 183 NIPPHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRL 242 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R +A +E D K G+ II+ EIPYQVNKARL+EKIA LV+++++ GIS LRDESD+ G Sbjct: 243 KVRGKARIEED-KNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRG 301 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIVIE+K+ V +V+LN LY TQLQV++G+ M+AL G P+++ LK+++ ++ H++E Sbjct: 302 LRIVIELKKGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKE 361 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVTRRT ++L KA RAHILE L +ALANID I++LIR AP A+ L+ N Sbjct: 362 VVTRRTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIEN------- 414 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + LTE+QA+AIL +RLQ+LTGLE +K+ EYKE Sbjct: 415 ---------------------------FNLTEKQAEAILRMRLQRLTGLERDKIEAEYKE 447 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L ++IA IL +L+ +I++EL ++E+F D+RRTEI+ + D+++EDLI +E VV Sbjct: 448 LKEKIAYYRSILADEGKLLGIIKDELLELKEKFQDERRTEISIQAVDLDVEDLIPEEQVV 507 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +TL+H GY+K P+ Y +QRRGGKG KEEDF++ + +TH + L F+++G+VY Sbjct: 508 ITLTHHGYIKRMPIDIYRSQRRGGKGIIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVY 567 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++V+++P+A+R ARG IVNLL LE++ERIT ++P+ EF+E + M T NG +KKT L Sbjct: 568 RLRVFEIPQASRQARGTAIVNLLELEEEERITTVIPIREFDEERYLVMVTRNGMIKKTPL 627 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E+ R G + + L D DELI V T G V++ + GK + FKE+ VR+MG G Sbjct: 628 AEYES-RYTGLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSMGRTAMG 686 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+ I L +GD VV + V +L T+ GYGKRT + EY +SR KG+I+ +TE+N Sbjct: 687 VKAITLEDGDYVVGMGVDSEGDDLLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKN 746 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G + G V + +++IT G ++RTRV IS +GRNT GV +IR E + VV L R++ Sbjct: 747 GNLAGVKVVREDHDLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARIS 806 Query: 841 EPVDEEDLDTID 852 +E+D++ +D Sbjct: 807 P--EEKDIEEMD 816 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 10/152 (6%) Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 ++ + L D + + ++T T +GY KR + Y ++ R KG+I I Sbjct: 485 RTEISIQAVDLDVED------LIPEEQVVITLTHHGYIKRMPIDIYRSQRRGGKGIIGIN 538 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE---N 832 T+ V + T+ G + R RV EI R +G ++ E E Sbjct: 539 -TKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASRQARGTAIVNLLELEEEER 597 Query: 833 VVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAP 864 + + + E +E L + + +A Sbjct: 598 ITTVIPIREFDEERYLVMVTRNGMIKKTPLAE 629 >UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GYRA_STAAC Length = 887 Score = 969 bits (2506), Expect = 0.0, Method: Composition-based stats. Identities = 429/882 (48%), Positives = 601/882 (68%), Gaps = 44/882 (4%) Query: 1 MSDLAR-EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDW 59 M++L + I NI E++ S+LDYAMSVIV RALPDVRDGLKPVHRR+LY +N G Sbjct: 1 MAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTP 60 Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 119 +K+YKKSAR+VGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDGQGNFGS+DGD AAA Sbjct: 61 DKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAA 120 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 MRYTE R+ KI EL+ D+ K+T+DF+DNYDG E+ P V+P + PNLL NG+SGIAVGMA Sbjct: 121 MRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMA 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNLTE+ING L+ + DISI LME I GPDFPTA +I G+ GI AY TGRG Sbjct: 181 TNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGS 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-K 298 + +R+RA +E GR+ I+V EIP+QVNKAR+IEKIAELV++K+++GI+ LRDE+ + Sbjct: 241 IQMRSRAVIEERG-GGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLR 299 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 G+R+VI+V++DA V+LNNLY QT LQ SFG+NM+AL +G+PK++NLK+ + ++ H+ Sbjct: 300 TGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQ 359 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 + VV RRT + LRKA+DRAHILE L +AL +ID II IR + T A +L Sbjct: 360 KTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR----- 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + L+E+QAQAILD+RL++LTGLE +K+ EY Sbjct: 415 -----------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEY 445 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQE 537 ELL+ I+EL IL + L++++R+EL +R++FGD RRTEI ++ EDLI +E Sbjct: 446 NELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEE 505 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 +V+TLSH Y+K P+S Y AQ RGG+G EEDF+ +L+ +THDH+L F+++G Sbjct: 506 QIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKG 565 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVK 656 RVY +K Y++PE +R ++G P+VN + LE DE I+ ++ V + E E + AT G VK Sbjct: 566 RVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKRGVVK 625 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 ++ L+ F+R+ GK+AI + DELI V LTSG++++++ ++ ++RF ES++R +G Sbjct: 626 RSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGR 685 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGD--GAILTATQNGYGKRTAVAEYPTKSRATKGVISI 774 TGV+GI L EGD+VV L V + +L T+NGYGKRT V +Y +R KG+ + Sbjct: 686 TATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTA 745 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 +TERNG VV V + +M++T+AG ++R V++IS GR QGV LIR +D+ V Sbjct: 746 TITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVS 805 Query: 835 GLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDV---DDEPE 873 + +V E ++E + ++ +D + + D+ P Sbjct: 806 TVAKVKEDAEDETNEDEQSTSTVSEDGTEQQREAVVNDETPG 847 >UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepID=A9GW54_SORC5 Length = 873 Score = 969 bits (2505), Expect = 0.0, Method: Composition-based stats. Identities = 421/832 (50%), Positives = 569/832 (68%), Gaps = 8/832 (0%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + ++ PV+I++EL++SYLDYAMSVI+GRA+PDVRDGLKPVHRR+LY+MN Sbjct: 4 TSNIQQKVPVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTG 63 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 A+KK ARVVGDV+GKYHPHGD AVYD +VRM Q FSLRY L+DGQGN+GS+DGDS AAMR Sbjct: 64 AHKKCARVVGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAAMR 123 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL+++A EL+ADL+K+TVDFV NYD +E P V+P K P LLVNGS GIAVGMATN Sbjct: 124 YTESRLSRMAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATN 183 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL E+I+ +A I + D+++E L+ +PGPDFPT +I G+ GI +AY TGRG + Sbjct: 184 IPPHNLGEIIDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIYGKSGIVQAYTTGRGSIT 243 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 +R R++VE K RE ++ EIPYQVNKARL+ KIAE +KEKR+EGIS +RDESD++GM Sbjct: 244 MRGRSQVEKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGM 303 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RIV+E+K+D +VVLN LY T LQ +FG+ +++ +G+P +++LKD ++ F+ HRREV Sbjct: 304 RIVVELKKDIFPQVVLNQLYRLTDLQATFGVINLSIANGRPAVLSLKDTLSHFIEHRREV 363 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 VTRR FELR+A + ++E L +A ++ID I+ IR + P +A+ L L + Sbjct: 364 VTRRCRFELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQK--LPLRGLG 421 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 L RAG + G Y+L+E+QA+AIL++RL +LTGLE EKL EY EL Sbjct: 422 EFLRRAGRPEPECAEAD-----TRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGEL 476 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 I L IL LM VI ELE ++ +FGDKRRTEI A+I +EDLI +ED+VV Sbjct: 477 SQTIERLRAILADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVV 536 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 T+SH GY+K P S Y AQRRGGKG +EED++ +L VA+TH ++ FS +G+V+ Sbjct: 537 TISHAGYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFV 596 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 KVY++P+A R A+GR IVN + +E E++ AI PV F+ V T G +KKT L Sbjct: 597 KKVYEIPQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGETFVVTLTRRGQIKKTALN 656 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 E+ R G + +++ +GD+L LT G+ E+++ + G +RF E VR G T GV Sbjct: 657 EYENYRDKGIIGVRIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRPTGRATMGV 716 Query: 722 RGIRLGEGDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 +GI L EGD VV L V G +L + GYGK+T + E+ +SR KGVI I +ERN Sbjct: 717 KGIELDEGDVVVGLGVSGDGRDRVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERN 776 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN 832 G VVG V D+++++TD G ++RT+ SEI GRN QGV ++ +DE Sbjct: 777 GPVVGVAMVSPSDEVLIVTDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828 >UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH79_ACIBL Length = 865 Score = 968 bits (2502), Expect = 0.0, Method: Composition-based stats. Identities = 401/860 (46%), Positives = 558/860 (64%), Gaps = 29/860 (3%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + I P+NIEEE+K SYLDY+MSVI+GRALPDVRDGLKPVHRR+LYAM+ +G N+ + Sbjct: 20 PQNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHV 79 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K A+VVG+V+GKYHPHGDSAVYD +VRMAQ FSLRY LVDGQGNFGS+DGD AA RYTE Sbjct: 80 KCAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTE 139 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+ IA EL+AD++K+TVDFV N+D T P ++PTK+PNLL+NGS+GIAVGMATNIPP Sbjct: 140 ARMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPP 199 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNLTE+++ C+ +++ +++ +++ + GPDFPT I+G+ GI+ AY+ GRG+ +RA Sbjct: 200 HNLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFIHGKGGIKNAYQNGRGRFMMRA 259 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + VE ++ I+V EIPYQVNK+ LI+KIA+LV +K ++ IS +RDESD+DGMRIV Sbjct: 260 KVAVEHLP--NKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRIV 317 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KR A E+VLN LY TQ+Q SF + +A+ + QPK M L + F+ HR +VV R Sbjct: 318 IELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQPKEMGLVQALNHFIDHRIDVVRR 377 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT + L+KA+DR HILE +AL ++D +I +IR + A+A+ LVA Sbjct: 378 RTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITINTT 437 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 +A + +QA AIL+L+L +LT L +++ E K++ ++ Sbjct: 438 GKAPKVDPEK--------------PFSTRQADAILELQLHRLTRLSIDEITSELKDVRER 483 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 IAE IL S +L VI +ELE +R+ +GD+RRT I +A+++LEDLI E V VT+S Sbjct: 484 IAEYESILASEKKLRSVIVKELEQIRKDYGDERRTIIQDEAAELSLEDLIADEQVAVTVS 543 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H GY+K P+S Y QRRGG G+ ++EDF++ + VA+TH ++L F++ GRVY +KV Sbjct: 544 HSGYLKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKV 603 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG-VKVFMATANGTVKKTVLTEF 663 Y++PE +G+ I NL+ L+ E + AILPV EE VF T GTVKKT L +F Sbjct: 604 YEVPEIAAAGKGKHIGNLVALQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDF 663 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + + G +AI + DEL+ LT V L S EG +RF E+ VR MG GVRG Sbjct: 664 SNVMARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADVRIMGRPAYGVRG 723 Query: 724 IRLGEGDKVVSLIVPRGDGA------------ILTATQNGYGKRTAVAEYPTKSRATKGV 771 + +G D +V + + + IL+ T+NGYGKRT V EY ++R KGV Sbjct: 724 MDIGAKDYIVGMAITPKERKKGKNGGADTANLILSVTENGYGKRTDVDEYRLQTRGGKGV 783 Query: 772 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE 831 I++K TERNG VV + V + + M+I+ G ++RT I GR+TQGV L+ + Sbjct: 784 INVKTTERNGKVVAIMLVTEDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGD 843 Query: 832 NVVGLQRVAEPVDEEDLDTI 851 V + + E T+ Sbjct: 844 KVAAAVVIPDDEKAEAEPTL 863 >UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8WIN1_EGGLE Length = 932 Score = 964 bits (2491), Expect = 0.0, Method: Composition-based stats. Identities = 409/863 (47%), Positives = 583/863 (67%), Gaps = 36/863 (4%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + +E+++S+L+YAMSVIV RALPDVRDGLKPVHRR+LYAMN G N+ + KSAR VGD Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 VIGKYHPHGDSAVYDT+VR+AQPFS+R LVDG GNFGSIDGD AAAMRYTE RL K+A Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAM 210 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 EL+ DL+KETVDF NYD + + P V+P + PNLLVNGS GIAVGMATNIPPHNL E I+ Sbjct: 211 ELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETID 270 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 +D+ D++ E LM+ +PGPDFPT II G++GI +AY TGRG + +RA+ +VE Sbjct: 271 ATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVEE-G 329 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 K GR +I+V EIPYQVN+ RL+EK+ ELV+EK++ IS + D +D+ G+ I+I++K+DA+ Sbjct: 330 KNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAI 389 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 +VVLN LY TQLQV FG+ M++L G P++++LK+++ ++ H+ EV+ RRT +EL K Sbjct: 390 PQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAK 449 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 A +RAHILE L +AL NID +I +IR + T EA + Sbjct: 450 AEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTER------------------- 490 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 + LT++Q AIL++RL++LTGLEH+K+ DE KELL++IA R+L Sbjct: 491 ---------------FGLTDKQTAAILEMRLRRLTGLEHQKIEDELKELLEKIAYFKRVL 535 Query: 493 GSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQ 552 + ++I+EEL V+++FG RRT ++ + D+++EDLI +E +VVT++ GYVK Sbjct: 536 SDDQLVHDIIKEELSEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRL 595 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 P++ Y Q+RGGKG S +K+ D+++ L VA+TH ++L FS++G+VY +KVY+LPEA+R Sbjct: 596 PVATYRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASR 655 Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 ARG IVNLLPLE+ E I+A++ +F + AT +G VKKT + ++R R G + Sbjct: 656 HARGTAIVNLLPLEKGETISAVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLI 715 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKV 732 AI L D D LI V + ++V++ S+ GK + + E VRAMG +T GVRG+ + KV Sbjct: 716 AISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVPPIAKV 775 Query: 733 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 + + + + D + T+ GYGKRT +AEYP R +GV +I +TE+ GL+ V + Sbjct: 776 LGMEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVAED 835 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTID 852 D+IM++++ G VRT VS IS +GR+TQGV +++TA+ + V + ++ ++ Sbjct: 836 DEIMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA-ISSRGKKKKASGAQ 894 Query: 853 GSAAEGDDEIAPEVDVDDEPEEE 875 E D+ E++ E E Sbjct: 895 VEGEELDENAIDELEDGAEGTAE 917 >UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYRA_MYCS2 Length = 842 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 383/864 (44%), Positives = 564/864 (65%), Gaps = 44/864 (5%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I PV+I++E++ SY+DYAMSVIVGRALP+VRDGLKPVHRRVLYAM G ++++ K Sbjct: 14 DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR V + +G YHPHGD+++YDT+VRMAQP+SLRY LVDGQGNFGS D AAMRYTE Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL +A E++ ++++ETVDF+ NYDG + P V+P++ PNLL NGS GIAVGMATNIPPH Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193 Query: 186 NLTEVINGCLAYIDD----EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 NL E+ +++ E+ + E +ME + GPDFPT+ +I G +GIE+ Y+TGRG + Sbjct: 194 NLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQGIEDTYKTGRGSIK 253 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDG 300 +R E+E D++ GR +I++ E+PYQVN I IAE V++ ++ GIS + D+ SD+ G Sbjct: 254 MRGVVEIEEDSR-GRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIV+E+KRDAV +VVLNNLY TQLQ SFG NM+++ G P+ + L +I +V H+ + Sbjct: 313 LRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVDHQLD 372 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT + LRKA +RAHIL L AL +D +I LIR + T A+ L+ Sbjct: 373 VIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIE-------- 424 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 L + + QAQAILD++L++L LE +K++D+ + Sbjct: 425 --------------------------LLDIDDIQAQAILDMQLRRLAALERQKIVDDLAK 458 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 + +IA+L IL +R ++R+EL+ + ++ GD RRT I +++ EDLI +EDVV Sbjct: 459 IEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAREDVV 518 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT++ GY K Y +Q+RGGKG A +K++D ++ V +THD IL F+++GRVY Sbjct: 519 VTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVY 578 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 K Y+LPEA+R ARG+ + NLL + +ERI ++ + +E+ + +AT NG VKK+ L Sbjct: 579 RAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKL 638 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAMGCNT 718 ++F+ R+ G VAI L +GDEL+G L S ED+++L SA G+ +RF + +R MG T Sbjct: 639 SDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRAT 698 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 +GV+G+R E D+++SL V R D +L AT GY KRT++ EY + R KG+++I+ Sbjct: 699 SGVQGMRFNEDDRLLSLNVVRPDTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDR 758 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + G +VGA+ VDD ++ IT G ++RT ++ GR T+GV L+ AE + ++ + R Sbjct: 759 KRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIAIAR 818 Query: 839 VAEPVDEEDLDTIDGSAAEGDDEI 862 ++E ++I S A+ + Sbjct: 819 --NADEDEAAESISESDADTAESP 840 >UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms RepID=Q2IHQ4_ANADE Length = 907 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 448/900 (49%), Positives = 599/900 (66%), Gaps = 75/900 (8%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 VNIE+E++ SYLDY+MSVI+GRALPDVRDGLKPVHRRVLYAM+ G +NK Y K A V Sbjct: 27 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86 Query: 70 VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 129 VG+V+ KYHPHGD++VYD +VR+AQ ++LRY L+DGQGNFGS+DGD AAA RYTE RL + Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 ++ L+AD++K+TVD+ N+D + P V+PT+ PNLLVNGS+GIAVGMATNIPPHN+ E Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 VI+ + I++ ++ LM IPGPDFPTA II GR GI AY GRG + +RAR VE Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGIIRGRDGIRAAYEKGRGTIQVRARTVVE 266 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 + KT RETI+V EIPYQVNKA+L+E IAELV+EKR+EGIS LRDES ++GMRIVIE+KR Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 DA+ +VVLNNLY+ TQ+Q+ FG+ M+A+ GQP+++ LK+++ FV HRR+VVTRRT +E Sbjct: 327 DALAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYE 386 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 LRKAR+R HIL +AL +ID IIELI+ A A+ ++A Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 + L+E QA+AIL+++LQ+LTGLE +K+LDE E+ I L Sbjct: 431 ------------------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLK 472 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 IL S LME+I EL V++ F D+RRTEI + D++ EDLI +E++VVT+SH GYV Sbjct: 473 EILASEKVLMELIVGELREVKQLFADERRTEIQGEATDLSTEDLIAEEEMVVTVSHLGYV 532 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 K P+S Y AQ+RGG+GK+ A ++EDF++ L VA+TH ++L FS +G+VY +KV+++P Sbjct: 533 KRNPVSLYRAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPP 592 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFE---------------------------E 642 A R A+G+PIVNL+ L E++ AILPV Sbjct: 593 AGRTAKGKPIVNLVQLAPGEKVAAILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGP 652 Query: 643 GVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGK 702 VFM T G +KKT L +F R R AG + + + +GDELI LT G ++L +A G Sbjct: 653 PAFVFMVTRKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGM 712 Query: 703 VVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG------AILTATQNGYGKRT 756 +RF+ES VR MG GV+GI L EGD+VV+ +LT T NGYGKRT Sbjct: 713 AIRFEESDVRPMGRTAYGVKGITLEEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRT 772 Query: 757 AVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVG 816 +AEY ++R KG+I+IK TERNG VV A V D +++M+IT+AG L+R IS++G Sbjct: 773 ELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVIG 832 Query: 817 RNTQGVILIRTA-EDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 RNTQGV LI ++E VVG+ RVAE E + + +E V+ P++E Sbjct: 833 RNTQGVRLITLESKEEQVVGVARVAETTPEAEEAGV-------REEPEGAAPVETAPQDE 885 >UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0H7_SALRD Length = 910 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 424/898 (47%), Positives = 595/898 (66%), Gaps = 29/898 (3%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + P+NIEEE+KSSY+DY+MSVIV RALPDVRDGLKPVHRRVLY M+ LG Sbjct: 1 MEADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQG 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 YKKSAR+VG+V+GKYHPHGDS+VYDT+VRMAQ FS+RY L DGQGNFGS+DGDSAAAM Sbjct: 61 ANYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+ +IA +++ D+ KETVD +N+DGT + P V+P PN+LVNG+ GIAVGMAT Sbjct: 121 RYTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL E I+ +AYIDD DI I+ LM+H+P PDFPT II G G+ EAY TGRG+V Sbjct: 181 KIPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRV 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA+ E + ++GR+ ++V E+PYQVNK+R +E+IA+ V+++R+EGI+ LRDESD+DG Sbjct: 241 VMRAKMH-EEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIVIE+K+ A E+V N +Y ++LQ +FG+NMVAL G+P+++ LKD I +V HR E Sbjct: 300 LRIVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHE 359 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 +V RRT ++L +A+DRAHILE L +AL ++D +I +IRH+P A+ L A + Sbjct: 360 IVVRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALS 419 Query: 421 AAMLERAGDDAARPEWLEPEFG---------------VRDGLYYLTEQQAQAILDLRLQK 465 L P + E D +LTE QA AIL LRL + Sbjct: 420 DDDLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSR 479 Query: 466 LTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA-N 524 LTGLE EK++ EY+++++QI E RIL S DR M +I+EEL V+E+F D+RRTEI Sbjct: 480 LTGLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTG 539 Query: 525 SADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVA 584 DI +EDLI ++ VVVT+++QG K P+ Y Q RGG G +E+DFI+ L V Sbjct: 540 GDDIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVC 599 Query: 585 NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE----- 639 ++HD +L F+ +G+ + ++ +++PE R A+GR I L+ ++ D+R+ A++ V++ Sbjct: 600 HSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFED 659 Query: 640 --FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLF 697 F V AT G VKKT L ++R R+ G + IK+ +GD+LI LT G++ V++ Sbjct: 660 EAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVA 719 Query: 698 SAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR----GDGAILTATQNGYG 753 S+ G+ V F E R MG NT GVRG+ L ++V +I D +L ++GYG Sbjct: 720 SSGGRAVHFDEGDARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAEHGYG 779 Query: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 813 KRTA+++Y + R KG+I++ T+R G +V V + +M+IT+ G ++RTRV EIS Sbjct: 780 KRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEIS 839 Query: 814 IVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLD-TIDGSAAEGDDEIAPEVDVDD 870 +GRNTQGV +I + + + + RVA+ + E D T D A + D A ++DD Sbjct: 840 TMGRNTQGVQVIDLKDGDAIADVTRVADTDEPEADDGTADDEAPDADAAAAANGEMDD 897 >UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8A6_THEAS Length = 816 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 379/846 (44%), Positives = 537/846 (63%), Gaps = 37/846 (4%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 SDL +++ P+ +EEE+K SY+DYAMSVIVGRALPD RDGLKPV RR+LYAM LG ++ Sbjct: 8 SDLFQKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQ 67 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSARVVG+ +GKYHPHGD+A+Y+T+VRM+Q FS+RY LVDGQGNFGSIDGD AAMR Sbjct: 68 PFKKSARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPAAMR 127 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL + E++AD++++TVD++ N+D + + P V+P++IPNLLVNGS+GIAVGMATN Sbjct: 128 YTEARLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATN 187 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 +PPHNL EV++ C +D+ D+ + LM H+PGPDFPT +I GR GI +AY TGRGK+ Sbjct: 188 MPPHNLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIMGRDGIIDAYTTGRGKIV 247 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 +R AE+E DAK G++ I++ +IPY VNK+ LIE I + V+ +++GI+ +RDES+++G+ Sbjct: 248 VRGCAEIE-DAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGI 306 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 R+V+E+ RD+ +VL LYS+TQLQ +FG+ +AL G+P +NLK ++ F+ HRR V Sbjct: 307 RLVLELHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVELNLKGLLQIFIDHRRMV 366 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 V RRT + LRKA +RAHILE L AL ID +I LIR + P AK LV Sbjct: 367 VRRRTQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEE-------- 418 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 TE QAQAILD+RLQ+LT LE KL +E EL Sbjct: 419 --------------------------LGFTEAQAQAILDMRLQRLTSLEKHKLQEELAEL 452 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 + QIA ILG L V+REEL V+ +GD+RRT I + D++ EDLI + +VVV Sbjct: 453 MAQIARYRLILGDPAELDSVVREELLEVKRAYGDERRTVIEDSVDDVSYEDLIPETEVVV 512 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 ++ G+++ PL +Y Q RGGKG A +K ED + + V TH + F+ RGRV+S Sbjct: 513 AMTRDGFIRRMPLQDYRCQARGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFS 572 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 +K +PE + RG+ + + L++ E + + E VF+ T G K+ + Sbjct: 573 LKCLAIPE-PKSGRGKHVSTFISLDEGESVVT-FRDSALEGARFVFLVTKMGLAKRLPVG 630 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 E + AG+ + L + D + V T GED+++L +A+G+ +R E+ R G GV Sbjct: 631 ELEGITRAGRRILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRPQGRAAKGV 690 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 RGI+L D VV V +L +Q G GKRT E+ R GV ++++ ER G Sbjct: 691 RGIKLDPDDLVVGCDVIMPGRQVLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGERTG 750 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 +VGA V D D+IM+IT G +VR ++S + R+ G+ L+R E + V + + Sbjct: 751 HLVGAWGVADDDEIMVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVIRC 810 Query: 842 PVDEED 847 ++E + Sbjct: 811 SMEEGE 816 >UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GYRA_STRR6 Length = 822 Score = 958 bits (2476), Expect = 0.0, Method: Composition-based stats. Identities = 408/855 (47%), Positives = 579/855 (67%), Gaps = 37/855 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + + VN+ +E+K+S++DYAMSVIV RALPDVRDGLKPVHRR+LY MN LG +K +K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+ GDV+GKYHPHGDS++Y+ +VRMAQ +S RYMLVDG GNFGS+DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R++KIA E++ D+ K TVDFVDNYD E+ P V+P + PNLLVNG++GIAVGMATNIPP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E I+ +D+ +++ + LME +PGPDFPT A++ G+ GI +AY TG+G + +R+ Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRS 242 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 R E+E KTGRE I+V E PY VNK ++ E I LV+EKR+EGI+A+RDES+++G+R V Sbjct: 243 RTEIET-TKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IEVKRDA V+LNNL+ TQ+Q +FG NM+A+ +G PKI++L+ I+ A++ H++EVV R Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT F+ KA RAHILE L +AL +ID +I +IR + T AEA+ L++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + L+E+Q+QAILD+RL++LTGLE +K+ EY +LL Sbjct: 411 -----------------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTE-ITANSADINLEDLITQEDVVVTL 543 IA+L IL +R+ ++I++EL+ V+ +F DKRRTE + + EDLI + DV++TL Sbjct: 448 IADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITL 507 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S++GY+K E+ AQ+RGG+G +K++DF+ L+ +THDH+L F+++GRVY +K Sbjct: 508 SNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLK 567 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPV-TEFEEGVKVFMATANGTVKKTVLTE 662 Y++PE R A+G P+VNLL L++DE I ++ V ++ + +F T +G VK+T + E Sbjct: 568 GYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKE 627 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 F +R G A+ L D DELI V L G+ ++++ + G VRF +S+VR M TGV+ Sbjct: 628 FANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVK 687 Query: 723 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 782 G+ L EGD VV + +L T+ GYGKRT EYPTK R KG+ + K+TE+NGL Sbjct: 688 GVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGL 747 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 + G + V + +M+ITD G ++RT ++ IS GR T GV ++R +D +V VA Sbjct: 748 LAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVA 807 Query: 843 VDEEDLDTIDGSAAE 857 EE + Sbjct: 808 EKEEVGTENETEGEA 822 >UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0LNR4_HALO1 Length = 891 Score = 954 bits (2465), Expect = 0.0, Method: Composition-based stats. Identities = 441/867 (50%), Positives = 587/867 (67%), Gaps = 12/867 (1%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSD+A +TPV IE+E++SS++DYAMSVI+ RALPD RDGLKPVHRR+L+A L N WN Sbjct: 1 MSDIA-NVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWN 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + Y K AR+VGDVIGKYHPHGDS+VYD +VRMAQ FS+RY LVDGQGNFGSIDGD AAM Sbjct: 60 RPYLKCARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+A++A +L+ADL+KETVD+ NYD E P V+PTK+PNLL+NG+SGIAVGMAT Sbjct: 120 RYTECRMARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL E+++ +A ++D D+ E L E +PGPDFPT II+GR GI A+ GRG V Sbjct: 180 NIPPHNLGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRAAHTLGRGAV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IR R + E K R+ I+V E+P+ VNK+R IE A LV++KR++GIS +RDESD+ G Sbjct: 240 VIRGRTQFETVRKE-RKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V E+KRDA +VVLNNL+ T LQ SF +NM+A+ G+P++++L+ + F+ HRR Sbjct: 299 IRVVFELKRDANEQVVLNNLFKMTALQTSFNVNMLAIVDGRPQVLSLRSALQVFIEHRRT 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV RR +FELR+AR+R I+E L +A+ ID +IE+IR + EAK L++ Sbjct: 359 VVRRRCLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSE------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 M + A E E G +L+ +QAQAILD+RL +LTGLE EK+ EY+E Sbjct: 412 RMMGLDGFLERAGRPADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRE 471 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L + L ILG +L VI +EL +R+Q+ D RRTEI +I E LI ED+V Sbjct: 472 LWEITDYLEGILGDDVKLRGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMV 531 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT + +GYVK L EY AQ RGGKG A ++DF+ + VA+THDH+L F++ GRVY Sbjct: 532 VTRTRRGYVKRTALDEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVY 591 Query: 601 SMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 KVY+LP +R ++GRP VN++ L+ DE + +LPV EF + + FMAT GTVKKTV Sbjct: 592 QKKVYELPSGSRISKGRPFVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTV 651 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 F+R+R G AI + DGDEL+ V LT + +V+L + G+ +RF+E VR MG Sbjct: 652 AAAFSRIRVTGIKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPMGREAR 711 Query: 720 GVRGIRLGEGDKVVSLIVP--RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GVRGI L GD VV + V + AILT +NGYGKRT ++ Y T+ R KG+I+IK T Sbjct: 712 GVRGIGLAGGDAVVGMSVFERDCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTT 771 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 ERNG V G V + D ++MI+ G L+R RV +I + R TQGV L+R E V L+ Sbjct: 772 ERNGPVSGVRLVGEDDHVIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLE 831 Query: 838 RVAEPVDEEDLDTIDGSAAEGDDEIAP 864 R+AEP D+ D + + + D+ Sbjct: 832 RLAEPDDDADSEAVTPELGDDDEIGNE 858 >UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organisms RepID=GYRA_NEIGO Length = 916 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 480/903 (53%), Positives = 622/903 (68%), Gaps = 50/903 (5%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 E PV++E+E++ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM+ L N+WN AYKKS Sbjct: 15 ETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKS 74 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 AR+VGDVIGKYHPHGDSAVYDTIVRMAQ F++RY+L+DGQGNFGS+DG +AAAMRYTEIR Sbjct: 75 ARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIR 134 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 +AKI+HE++AD+E+ETV+F NYDG+E P V+PT+ P LLVNGSSGIAVGMATNIPPHN Sbjct: 135 MAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHN 194 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 LT+ IN CL +D+ I+ L++ I PDFPT A I G G+ E Y+TGRG+V +R + Sbjct: 195 LTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREGYKTGRGRVVMRGKT 254 Query: 247 EVEVDAKTG-RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 +E K G RE I++ EIPYQVNKA+L+EKI +LV+EK +EGIS LRDESDK GMR+VI Sbjct: 255 HIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVI 314 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+KR+ EVVLN LY T LQ SFGINMV L GQP+++NLK I++ F+RHRREVVTRR Sbjct: 315 ELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRR 374 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T+F L+KAR HI E AVAL+NID II+LI+ +P AEAK L+A PW V ML Sbjct: 375 TLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEEMLT 434 Query: 426 RAGDDAA--RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 R+G D RPE L G++ YYL+E QA AIL + L+ LTGL+ +++++ YK L+ Sbjct: 435 RSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMG 494 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 +I + + IL +R+ ++IR+ELE ++ +GD+RR+EI DI EDLI Q ++VVTL Sbjct: 495 KIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTL 554 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 +H GY+K QP ++Y+AQRRGG+GK AA K+EDFI+ L VANTHD+++CF++ G+ + +K Sbjct: 555 THGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIK 614 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 VY+LPE R +RGRPI N++ LE+ E+++AIL V EF E VF ATA G VKK L+ F Sbjct: 615 VYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAF 674 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE--------------- 708 +R G AI L +GD L+G T G D++MLFS GK +RF E Sbjct: 675 KNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADI 734 Query: 709 ---------------SSVRAMGCNTTGVR----------GIRLGEGDKVVSLIVPRGDGA 743 + G N GVR G+RL K+VSLI + Sbjct: 735 ETEISDDLEDETADNENTLPSGKN--GVRPSGRGSGGLRGMRLPADGKIVSLITFAPETE 792 Query: 744 -----ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI 798 +LTAT NGYGKRT +A+Y K++ +G I+I ERNG +V A V + D +M+I Sbjct: 793 ESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLI 852 Query: 799 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEG 858 T G L+RT+V +I GR GV LI E E +V L+RVAE E ++ + E Sbjct: 853 TSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVISNVTEP 912 Query: 859 DDE 861 + E Sbjct: 913 EAE 915 >UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria RepID=GYRA_BUCAI Length = 830 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 552/846 (65%), Positives = 694/846 (82%), Gaps = 19/846 (2%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M D +REI VNIEEELKSSYLDY+MSVIVGRALPDVRDGLKPVHRR+L+AM +L NDWN Sbjct: 1 MKDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSAR+VGDVIGKYHPHGDSAVYD IVRMAQ FSLRYML+DGQGNFGS+DGDSAAAM Sbjct: 61 KAYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R++KIAHEL+ DLEK TV+F+ NYDGTE IP+++P KIPNLL+NGSSGIAVGMAT Sbjct: 121 RYTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVINGCLAYID+ DI++E L++HIPGPDFPTAAIING+ GIEEAYRTG+GK+ Sbjct: 181 NIPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRA+ ++E + K +E+I+ +EIPYQVNK+RLIEKIAELVKEKR++GI+ALRDESDKDG Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+KR+A+ EV+LN LYS TQLQ+SFGINMVAL GQPK ++LK+I+ F+ HR+E Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQE 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ RR++FEL K R+R HILE L +AL NI+ IIE+I+++ +AK ++ W+ + Sbjct: 361 IIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKI 420 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++ YY +E+QAQAILDLRL K+T LE EK++ E+ + Sbjct: 421 NYLAKK-------------------HEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHND 461 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L+ + EL IL + ++ EVI+ EL ++ F DKRRT+IT N +DIN+EDLI QEDVV Sbjct: 462 LIKKTKELKEILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVV 521 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLSH GYVKYQPLS+Y AQRRGGKGKSAA+IKEEDFI+ L++ANTHD ILCFSSRG +Y Sbjct: 522 VTLSHSGYVKYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILY 581 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 MKVYQLPE++R ARGRPIVNLLPL ERITAILPV ++++ + +FM TA+G VKK+ L Sbjct: 582 WMKVYQLPESSRHARGRPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSL 641 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 ++F + R AG +AI L DELIGV LT G + +MLF+ GKVV+F E+SVR MG +G Sbjct: 642 SQFKKPRFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASG 701 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+GI++ + DKVVSLIVP+ G+IL AT+NGYGKRT ++++P KSRAT+GVISIK+T++N Sbjct: 702 VKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN 761 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G ++GA+QV + DQIMMITDAGTLVR RVSE+ ++ RNTQGVILIRT+++E VV LQ++ Sbjct: 762 GKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIV 821 Query: 841 EPVDEE 846 +P+ E+ Sbjct: 822 DPMIEK 827 >UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms RepID=GYRA_SYNY3 Length = 860 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 384/894 (42%), Positives = 550/894 (61%), Gaps = 72/894 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D + ++ E+ SYL+YAMSVIVGRALPD RDGLKPVHRR+LYAM LG + Sbjct: 1 MTDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPD 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + ++K ARVVG+V+GKYHPHGD+AVYD +VRMAQ FS+R L+DG GNFGS+D D AAM Sbjct: 61 RPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAM 120 Query: 121 RYTEIRLAKI-AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 RYTE RL + + L+ D+E ETVDF+DN+DG+++ P V+P +IP LL+NGSSGIAVGMA Sbjct: 121 RYTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMA 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNL EVI+G +A I + +I+ + LM+ IPGPDFPT A I GR GI EAY TGRG Sbjct: 181 TNIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGS 240 Query: 240 VYIRARAEVEVD---AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 + +R A +E + R+ IIV E+PYQ NKA LIE+IA+LV +K+++GI+ +RDES Sbjct: 241 ITMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDES 300 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 D+DGMRIVIE+KRDA VVLNNLY QT +Q +FG N++AL +G P+++ +K + F Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWE 360 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R E +TRRT +ELRKA +R H+L+ L +AL N+D +I LIR A A AKT LV Sbjct: 361 FRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEG--- 417 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 + L+E QA AIL ++L++LT LE +K+ Sbjct: 418 -------------------------------FSLSEVQADAILQMQLRRLTALEADKITA 446 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 E+ EL +IA+ IL +R+ +I EELE ++ RRT I ++ DLI Sbjct: 447 EHDELQTKIADFQDILARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIAN 506 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + ++ L+ QGY+K P S + Q R +GK+AA+IK++D ++ L HD +L FS R Sbjct: 507 DQALILLTEQGYIKRMPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDR 566 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G VYS+ YQ+P A+R ARG PIV +LP+ +DE+IT+++ V+EF++ M T G +K Sbjct: 567 GVVYSLNAYQIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIK 626 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF--KESSVRAM 714 KT L+ F+ +R G +AI LV+GD+L V L ED V++ S +G + F + +RA+ Sbjct: 627 KTALSAFSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRAL 686 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVP--------------------------------RGDG 742 G T GV+ +RL GD ++S+ + Sbjct: 687 GRATRGVKSMRLRSGDALISMDILPSQVVANIAVGSEDEPDEDLGGDTDAILEESDNPGP 746 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802 +L T G+GKR + ++ + RA GV +I+ ++ +V V+ D++M++T+ G Sbjct: 747 WLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDDQLVALHVVNADDELMIVTNRG 806 Query: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 ++R V++IS R+ GV + R D+ + + V +EE + + + Sbjct: 807 IIIRQSVNDISPQSRSATGVRVQRLDADDAIAAVALVPPSGEEELAEMSESEES 860 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 107/288 (37%), Gaps = 25/288 (8%) Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 + R RV ++ +L + P ++ E E ++ + + T Sbjct: 461 ILARRERVNAIIEEELEQIKAI-HATPRRTVIVQEDGE----LIDTDLIANDQALILLTE 515 Query: 652 NGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKES 709 G +K+ + F GK A K+ D D + D+V+ FS G V Sbjct: 516 QGYIKRMPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAY 575 Query: 710 SVRAMGCNTTGV---RGIRLGEGDKVVSLIVP---RGDGAILTATQNGYGKRTAVAEYPT 763 + GV + + + + +K+ SL+ D + T+ GY K+TA++ + Sbjct: 576 QIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAFSN 635 Query: 764 KSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS--EISIVGRNTQG 821 G+I+I + E + D +++ + G + + E+ +GR T+G Sbjct: 636 IR--ANGLIAISLVE-GDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRG 692 Query: 822 VILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVD 869 V +R + ++ + + + A +DE ++ D Sbjct: 693 VKSMRLRSGDALISMDILPSQ-------VVANIAVGSEDEPDEDLGGD 733 >UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R591_9CHLA Length = 865 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 397/878 (45%), Positives = 554/878 (63%), Gaps = 44/878 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 I P N+E+E+K SYL Y+MSVI+ RALPD RDGLKP RR+LYAM L Sbjct: 3 YTENEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGG 62 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 ++K A++ GD G YHPHG+ +Y T+VRMAQ + +RY LVDGQGNFGS+DGD AAMR Sbjct: 63 KHRKCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMR 122 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL + +LM DL+K TV+ V NYD T+K P V P K PNLL NGSSGIAVGMATN Sbjct: 123 YTEARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATN 182 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL E+I L + + +SI+ +M +P PDFPT II G RGI+EA+ TGRG++ Sbjct: 183 IPPHNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYRGIKEAFHTGRGRLL 242 Query: 242 IRARAEVEVDAKT-GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA VE + + ++ +IV EIPY VNK+RLIE+IA+L+ K + GI+ LRDESDKDG Sbjct: 243 LRAVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDG 302 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRI+IE+KR + EV+LN L+ + LQ++FG NM+AL G PK+MN+K +IAA+V HR E Sbjct: 303 MRILIELKRGEIVEVILNQLFKYSDLQITFGCNMLALDKGLPKVMNVKQLIAAWVDHRIE 362 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV RRT FEL KA RAHILE A+ ++D ++ +IR + EA+ L+ Sbjct: 363 VVRRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQR------- 415 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + LTE+QA A+LDL+L +LTGLE+EK+ +EY+E Sbjct: 416 ---------------------------FDLTERQANAVLDLKLYQLTGLEYEKINEEYRE 448 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 LL +I L +L S + ++IREEL +++ R+T+I A +++N+EDLI E V+ Sbjct: 449 LLQKIDYLRAVLASEAMVRDIIREELLEIQKNHRSGRKTQIIAAESEVNMEDLIANESVI 508 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRV 599 +T+S Y+K P+ + QRRGG+G + +K EED I L VA+THD++L F++ GR Sbjct: 509 ITISEDDYIKRMPVDTFREQRRGGQGIAGMHLKREEDAIKGLYVASTHDYLLIFTNLGRC 568 Query: 600 YSMKVYQLPEATRGARGRPIVNLL-PLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 Y +KV+Q+PE R ++G+P++NLL + DE+I +L V+ FE+ + MAT G VKKT Sbjct: 569 YWLKVWQIPETGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQAYILMATKKGIVKKT 628 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 L+EF+ R G A+ +V+GDE++ L S ++MLF+ G VRF + VR MG Sbjct: 629 ELSEFSHPRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRPMGRTA 688 Query: 719 TGVRGIRLGEG-DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GV+G+ L + D VV G IL +NG+GKR+ V ++ +R GV SI + Sbjct: 689 RGVKGVTLKDDTDYVVGCEAVNGTETILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITS 748 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 ERNG VVGA+ V D D ++M++ G VR + ++ ++GRNTQGV L E + +V +Q Sbjct: 749 ERNGNVVGALCVTDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQ 808 Query: 838 RVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 ++ E D +D + + P V + EE Sbjct: 809 KL------EVSDDVDNAKVDTQPSAPPLVKEEGSDLEE 840 >UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria RepID=GYRA_BUCBP Length = 847 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 525/841 (62%), Positives = 675/841 (80%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M ++A+EI ++IE+ELK+SYLDYAMSVI+GRALPDVRDGLKPVHRR+L+AM VL NDWN Sbjct: 1 MKEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSAR+VGDVIGKYHPHGD+AVYD IVRMAQPFSLRY+L+DGQGNFGSIDGDSAAAM Sbjct: 61 KTYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIR++KIA+EL+ DL+K TV F NYDGTEKIP+V+P KIPNLL+NGSSGIAVGMAT Sbjct: 121 RYTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHN+ EVINGCLA+IDD++I+++ LMEHIPGPDFPTA +ING+RGIE+AY+TG+GK+ Sbjct: 181 NIPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 YIRA++ +E+ KT +++II++E+PYQVNKAR+I+ IA LVKEK++EGI+ LRDESDK+G Sbjct: 241 YIRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+K++ E++LN LYS TQL++SFGINMVAL HGQPK+M LK+I+ AF+ HRR+ Sbjct: 301 MRIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRK 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ RR++FEL K R + HILE L ++L NID II LI+ + T EAK L W + Sbjct: 361 IIMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHA 420 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + + + + + ++LT +Q QAIL+LRLQKLT LEH+KL+ EYK+ Sbjct: 421 QYTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQ 480 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L L IL + + L +++++EL +R+ FGDKRRT+I N +DIN DLI +E+VV Sbjct: 481 LFKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENVV 540 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +TLS+ GYVKYQ LS YEAQ+RGGKGK A + KEEDFI+ LLVANTHD ILCFSS+G +Y Sbjct: 541 ITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILY 600 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 MKVYQLPEA+R ARGRPIVNLLPL +ERITAILP++E+++ + +FMAT+ G VKKT L Sbjct: 601 WMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSKGMVKKTSL 660 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 EF + RT G +AI L DELIGV LT+G + +MLF+A+GK V F E VR G G Sbjct: 661 YEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVRKTGRTAIG 720 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+GI++ + DKVVSL+VP+ G IL T++GYGKRT + E+P KSRAT+G I++K+T++N Sbjct: 721 VQGIKIKKSDKVVSLVVPKKHGNILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKN 780 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G+V+G +QV + DQI++IT+AGTLVRTRV EI I+GRNTQGVI+IRT++ E VV LQ+ Sbjct: 781 GIVIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKKEKVVALQKAN 840 Query: 841 E 841 Sbjct: 841 A 841 >UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MRF5_9FIRM Length = 878 Score = 941 bits (2433), Expect = 0.0, Method: Composition-based stats. Identities = 367/855 (42%), Positives = 562/855 (65%), Gaps = 11/855 (1%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 S ++ V+IE+E++ S+L Y+M+V+V RALPDVRDG+KPVHRR++Y MN N + Sbjct: 8 FSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSS 67 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K Y+K A VG+V+GKYHPHGD++VYD +VR+AQ FS+RY L+DG GNFGS+DGD AA Sbjct: 68 KPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAY 127 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+AKIA EL+ D++K+T+D+ NYD P V+P K PNLLVNGS GIAVGMAT Sbjct: 128 RYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMAT 187 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EV + +A +D+ + SIE ++++I GPDFPT II G GI AY TGRGK+ Sbjct: 188 NIPPHNLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKI 247 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R +AE+ + R IIV EIPY VNK++L+E +L+++KR+EGIS LRDESDKDG Sbjct: 248 TLRGKAEIVEEGNHSR--IIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDG 305 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIV E+KRD +VVLN LYS TQLQ + G+ M+AL +G+PK + L +I+ ++ +++ Sbjct: 306 MRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQ 365 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++TRRT F+L+KAR+RAHIL+ +A+ NID +I ++R + + E K L+ + Sbjct: 366 IITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLA 425 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + G++ + L+E+QA AI+ +RL +LTGLE +K++ E E Sbjct: 426 KLLQRAMGENYKDVHFEHEI--------GLSEEQADAIVQMRLGQLTGLERDKVISELAE 477 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 ++++I + L IL S +R+ E+I+EE+ ++E++GD+RRT I S ++++EDLI +E+ V Sbjct: 478 IMEKINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECV 537 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T ++ GY+K QP+ Y Q+RGGKG S + +EEDF++ + +++THD+IL ++ G +Y Sbjct: 538 LTYTNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMY 597 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +K Y++PE ++ +RG IVNLL L++ ERI A++ ++F E T G +K+T L Sbjct: 598 KLKCYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPL 657 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +F +R G AI L +GDE+ LT G+ +++ + G + F E +R+MG G Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAG 717 Query: 721 VRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 VR I+L E D +V V D ILT T GYG+ +A+++Y ++R G+ + K+ + Sbjct: 718 VRAIKLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDD 777 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 G V G + D +++I+ G ++R R +++ ++ R GV +++ ++++ VV R Sbjct: 778 RGYVCGIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRT 837 Query: 840 AEPVDEEDLDTIDGS 854 + + S Sbjct: 838 EHDETADIEEVEQAS 852 >UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V9C1_DESVV Length = 856 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 408/870 (46%), Positives = 573/870 (65%), Gaps = 43/870 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 E ++IE+EL+ SYL+Y++SVI+GRA+PDVRDGLKPVHRR+++A + LGN +N+ +KK Sbjct: 21 SEQQQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKK 80 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VGDVIGKYHPHGDSAVYD IVRMAQ FS+R LVDGQGNFGSIDGD+AAAMRYTE+ Sbjct: 81 SARIVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEV 140 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R++++A E +AD+EKETVDF NYD T P V+PT++PNLL+NGS+GIAVGMATNIPPH Sbjct: 141 RMSRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPH 200 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+ N L +DD+ +I+ LM+H+ GPDFPT + +G+ +AY TGRG V +R + Sbjct: 201 NLGELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGK 260 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E+E K G + I++ EIPY +NK+ L+EKIA LV E+R++G++ LRDESD+ G+R+VI Sbjct: 261 VEIEERKK-GFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVI 319 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 ++KR + ++V+N LY T L+ S+GINM+A+ +P++++LK ++ F+ HRRE++ RR Sbjct: 320 DLKRGTIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRR 379 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T ++LRKA RAHILE L +AL NID ++ LIR + TP EAK L+ Sbjct: 380 TRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR------------ 427 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E Q+QAILD+RLQ+LT LEHEKLLDEY+ELL +I Sbjct: 428 ----------------------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKI 465 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTE-ITANSADINLEDLITQEDVVVTLS 544 IL + + L +V+REE +R+ + KRRTE + I +EDLI +DVV+TLS Sbjct: 466 EYFRSILENIEVLRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLS 525 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 +GY+K L Y+ QRRGGKG + ++DF+ L H ++L F++ G+++ +KV Sbjct: 526 RRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKV 585 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 +Q+ E +R A+G I NLLPLE+DE +T +L V EF E T G VK++ + + Sbjct: 586 HQVAEGSRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYA 645 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 R R G +A+ L D DELI V +D V+L + G +RF VR MG + TGV+G+ Sbjct: 646 RARKGGLIAVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGV 705 Query: 725 RLGEGDKVVSLIVPRGDG---AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 L D+VV+ V GD I++ + NGYGKRT + Y +SR KGV + +VT + G Sbjct: 706 ALSGDDRVVACAVLPGDDTSTEIMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTG 765 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 V+GA+ V D + ++++T ++R V E+ VGR T GV+L+R E VVG RV Sbjct: 766 DVIGAMPVRDDEALVLLTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRV-- 823 Query: 842 PVDEEDLDTIDGSAAEGDDEIAPEVDVDDE 871 DE ++ A + + APE Sbjct: 824 --DEREVVEESAPAQSSEQKTAPEGGDAGT 851 >UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2RJ49_PORG3 Length = 859 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 404/888 (45%), Positives = 578/888 (65%), Gaps = 53/888 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D I ++IEEE+K++Y+DY+MSVIV RALPDVRDG KPVHRRVLYAMN GN + Sbjct: 1 MTDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYT 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +K A VG+V+G YHPHGDS+VY +VRMAQP+SLRY LVDGQGNFGS+DGDS AAM Sbjct: 61 NPTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL++IA E++ D++KETVDF +N+D T + P V+PT+IPNLL+NG+SGIAVGMAT Sbjct: 121 RYTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYID-DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 N+PPHNL+E I+GC+AYI+ D DI +EGLM+++ PDFPT I G G++EA+ TGRG+ Sbjct: 181 NMPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGR 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 V IR+RAE+E E II+ EIPY VNKA L+ IA+L+ EKR++GIS + DES++ Sbjct: 241 VVIRSRAEIEQ--HNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRK 298 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMRIV+E+KRDA VVLN LY T LQ SF +N +AL G+P+++NLKD+I FV HR+ Sbjct: 299 GMRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQ 358 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVVTRR FELRKAR+RAHILE L +A+ NID +I +IR + AEA + L+ Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER------ 412 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L++ QA++I+D+RL+ LTGLE +KL E++ Sbjct: 413 ----------------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFE 444 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 E++ I L +L LME+++ EL ++E++GD R++EI S + N ED +D+ Sbjct: 445 EIMASINHLEALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDM 504 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 ++TLSH GY+K PLSE+ Q RGG G + +EEDF++ + A+ H I+ F+++GR Sbjct: 505 IITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRC 564 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV------TEFEEGVKVFMATANG 653 Y +KVY++PE + A+GR I NLL ++ D+++ A + + EF + T G Sbjct: 565 YWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRG 624 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA 713 +KKT+L F+R R G +AI L D D L+ V LT+G+ ++++ + G+ +RF ES VR Sbjct: 625 IIKKTLLEAFSRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP 684 Query: 714 MGCNTTGVRGIRLGEG--DKVVSLIVP--RGDGAILTATQNGYGKRTAVAEYPTKSRATK 769 G GV+G+ L + D+VV +I + IL ++ GYGKR+ + +Y +R K Sbjct: 685 SGRTAMGVKGMTLDDDGEDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYRITNRGGK 744 Query: 770 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 GV ++ +TE+ G +V V D + +M+I +G +R +V+++SI+GR TQGV LI ++ Sbjct: 745 GVKTLNITEKTGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSK 804 Query: 830 -DENVVGLQRVAEPVDEEDLD-----TIDGSAAEGDDEIAPEVDVDDE 871 + + + V +E + T + + DV D Sbjct: 805 RGDEIASVCSVVSEEEENKAEKHADHTHEVLPQDDSSSSVENGDVSDM 852 >UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GYRA_RICBR Length = 905 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 437/894 (48%), Positives = 600/894 (67%), Gaps = 62/894 (6%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + + PVNIE+E+K SYLDYAMSVIV RA+PDVRDGLKPVHRR++Y+M+ GN N+ Sbjct: 3 DNNSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANR 62 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 AY+KSAR+VGDV+GKYHPHGDSA+YD++VRMAQ FSLR LVDGQGNFGS+DGD+AAAMR Sbjct: 63 AYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMR 122 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE R+AK+AH+L+ D++KETV F NYDG+E+ P V+P+ PNLLVNGS GIAVGMATN Sbjct: 123 YTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATN 182 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL EVI+ C Y+D+ DI I L+E + GPDFPT+ II G GI+ AY TGRG + Sbjct: 183 IPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIA 242 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 IR RAE+E + GR+ II+ EIPY VNKARL+EKIAE+VKEKR+EGIS LRDES+K+G+ Sbjct: 243 IRGRAEIE-NLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGI 301 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RI IE+K+D V EVVLN +YS TQLQ SFG+ M+AL G PK+MNLK++IAAFV R V Sbjct: 302 RIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVV 361 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 +T RTI+ L KARD+AHIL L +A++NID II +I+ A P AK L+A W N+ Sbjct: 362 ITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNIL 421 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 +++ D A E G TE QA+AIL++RLQ+LT +E KL ++ K L Sbjct: 422 PLVKLVDDKAMLNEE---------GKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNL 472 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 +I E L ILGS +RL+E+++EEL V+E+F R T I D ++EDLI +E++VV Sbjct: 473 ATEITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 T++ GY+K PLS Y AQ+RGGKG+S +++ED ++ V +TH +L FS+ G+VYS Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKT 658 +K+Y+LP + +GRP+VN+LPL+ DE IT I+P+ E ++ + + ATA G ++++ Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCN 717 L +F ++++ GK+AI+L + D+LI V ++ ++L + GK +RF S+R Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712 Query: 718 TTGVRGIRLGEGDKVVSLIVP--------------------------------------- 738 + GVRG+RL E D V+S+ V Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDL 772 Query: 739 ---------RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV 789 + ILT T+NG+GKR++ Y R G+I++ + ++ GLVVG + V Sbjct: 773 TAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832 Query: 790 DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 D++M+IT++G L+R ++ + I GRNT GV L R + E VV +AE Sbjct: 833 KMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAESS 886 >UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYRA_CHLTR Length = 836 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 389/870 (44%), Positives = 548/870 (62%), Gaps = 40/870 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + I P N+EEE+K SYL Y+MSVI+ RALPD RDGLKP RR+LYAM L Sbjct: 1 MLNKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPG 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 ++K A++ GD G YHPHG+S +Y T+VRMAQ +++RY LVDGQGNFGSIDGD AAAM Sbjct: 61 VKHRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL A L+ DL+K+TVD V NYD T+ P V P+K PNLL NGSSGIAVGMAT Sbjct: 121 RYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL E+I L + + SIE ++E +PGPDFPT II G GI Y TGRGK+ Sbjct: 181 NIPPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKL 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RAR VE ++ RE II+ E+PY VNK+RLIE+IAEL+ EK + GIS +RDESDKDG Sbjct: 241 RLRARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDG 300 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V+E+K+ EVV+N LY T +QV+FG NM+AL P+ MN+ +I+A++RHR + Sbjct: 301 IRVVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMD 360 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT +EL KA RAHILE AL+ +D +++ IR + AK LV Sbjct: 361 VIQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE-------- 412 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 L+ +E QA AIL+LRL +LTGLE +K+ EY E Sbjct: 413 --------------------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSE 446 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI-NLEDLITQEDV 539 LL++I ++L + + ++IREEL+ + + RRT I ++ D+ ++ED+I+ E V Sbjct: 447 LLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESV 506 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGR 598 ++T+S YVK P+ + Q+RGG+G + +K+ DF+ + A+T D++L F++ G+ Sbjct: 507 IITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQ 566 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 Y +KV++LPE R A+G+PI+N L + E++ A+L V FE+G +F+AT G VKK Sbjct: 567 CYWLKVWRLPEGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKK 626 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGV-DLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 L F R G A+++ DGDELI + + E++VMLF+ G VRF VR MG Sbjct: 627 VSLDAFGSPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGR 686 Query: 717 NTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 GVRG+ L E D VVS V D ++L NG+GKR+ V ++ +R + GV SI Sbjct: 687 AARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIV 746 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 + +RNG V+GA+ V DCD I++++ G +R + ++ ++GR TQGV L+ E + +V Sbjct: 747 INQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVA 806 Query: 836 LQRVAEPVDE-EDLDTIDGSAAEGDDEIAP 864 +++++ + E + + S G D I Sbjct: 807 MEKLSINTESVETEENLAASVQSGQDTIEE 836 >UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PS29_9SPIO Length = 838 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 388/866 (44%), Positives = 568/866 (65%), Gaps = 42/866 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P++IE E+K +Y+DY+MSVIV RALPDVRDGLKPVHRR+LY+M ++ +K A Sbjct: 12 LIPISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCA 71 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VGDV+G YHPHGD++VYD +VR+ Q FSLRY ++ QGNFG+I GD AA RYTE ++ Sbjct: 72 KIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A++A ++ D++K+TVDF+ N+D + + P V+P K P LL NGSSGIAVGMATN+PPHNL Sbjct: 132 ARLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNL 191 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+ AYID+ DI+I+ L ++I GPDFPT II G++GI +A++TGRGK+ +R R Sbjct: 192 REIAQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIFGKKGIRQAFKTGRGKILVRGRFN 251 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 +EVD K G+ETII E+PYQVN L+ KI EL +EK +EGI+A+ DE SD+ G+R+VIE Sbjct: 252 IEVDKK-GKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIE 310 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KR A+ +VVLN L+S+T LQ SFG+ +AL G+P+ + LK ++ FV HR+EVVTRR Sbjct: 311 LKRGAIAKVVLNQLFSKTALQSSFGVINLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRV 370 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F+L+KA +RAHIL AL VA+ NID +I++IR + A AK AL+ Sbjct: 371 RFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMER------------- 417 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + + QAQAI+D++L++LT LE E L E +EL I Sbjct: 418 ---------------------FSFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELEVLIE 456 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEI-TANSADINLEDLITQEDVVVTLSH 545 L +L ++++ +I++E + E+FGD RRT+I + +IN+EDLI +E +VV +S+ Sbjct: 457 HLKDLLAHPEKILALIKQETNELAEKFGDDRRTDIVSDEVEEINIEDLIKKEQMVVLVSN 516 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K P++ Y+ Q RGGKG ++A + E+DFID++ A+THD+I+ ++ G+ Y +KV+ Sbjct: 517 LGYIKRVPVTAYKRQNRGGKGSNSAALVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVH 576 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 ++PEA+R +RG I +LL + DE IT I+ + EF + MATA G VKK F Sbjct: 577 EIPEASRTSRGSHIKSLLAVSSDEEITTIVSLKEFSSDTYLLMATAGGIVKKVQTDSFQN 636 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +T G +AIKL +GD+L+ LT+G+DE+ML + +G+ +R E+ +R G + GV GIR Sbjct: 637 AKTRGIIAIKLDEGDKLVSAILTTGKDELMLVTRQGQALRVSEAEIRDQGRASHGVIGIR 696 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L GD++ + +G +L ++NGYGKR +E+ R T G VTE+ G VVG Sbjct: 697 LSGGDELTGALRIN-NGKLLVMSENGYGKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVG 755 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 + V D D+I+ IT G +R +VS I+++GR QGV ++ + ++GL VA +E Sbjct: 756 LLAVADDDEIVCITGQGKTIRVQVSSINVMGRAAQGVRILDIESPDQLIGLDVVAREDEE 815 Query: 846 EDLDTIDGSAAEGDDEIAPEVDVDDE 871 +I +A+E ++D D Sbjct: 816 ----SITPAASETTFNGELDLDGGDA 837 >UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacterium RepID=C5JAM2_9BACT Length = 890 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 404/897 (45%), Positives = 568/897 (63%), Gaps = 60/897 (6%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 L +I + +EEE+K SYLDYAMSVIV RALPDVRDG K VHRR+LY + LG D K Sbjct: 5 TLFDDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKP 64 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 ++KSA +VG+V+GKYHPHGDSA+Y+T+VRMAQ FS+ L+DGQGNFGSIDGDSAAAMRY Sbjct: 65 HRKSALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRY 124 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R+AKI+ E++ADL+ TV F NYDG+ + P V+PT++P++L+NG+SGIAVGMATNI Sbjct: 125 TESRMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNI 184 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL E+++ C A +++ + + +ME + GPDFPT I G GI A+RTGRG + + Sbjct: 185 PPHNLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSGILNAFRTGRGSIVM 244 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 R +A VE K +E I+V EIPYQVNKA+L+EKI EL ++K V+GI +RDES++ G+R Sbjct: 245 RGKASVEE-LKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIR 303 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IVIE+KRD +V+LN LY TQLQ++F N++AL G P+ + LK + F+ R +V+ Sbjct: 304 IVIEIKRDGNSQVILNQLYKHTQLQMNFSANVLALVKGVPQTLGLKASLTCFLEFRYDVI 363 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT + L KARD+AHIL A+AL++ID +I LI+ A A L+ W ++ + Sbjct: 364 VRRTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKS 423 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 L L+ Y L+E QA AILDLRL KLTG+E E++ + + + Sbjct: 424 YLAL----------LQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTM 473 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 D I E + ILG +R+ +++ +E + ++ + RR+EI DI EDLI E++VVT Sbjct: 474 DAIQEYIDILGKPERVRKIMTDEFKTIKADYPTPRRSEILPAEDDIEDEDLIPSEEMVVT 533 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 +S GY+K PLS Y AQ RGGKG+S +KEED++ ++VANTHD +L F++ G+VY + Sbjct: 534 ISFGGYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRI 593 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPV-TEFEEGVKVFMATANGTVKKTVLT 661 V+QLP T A+GR I+N+LP+E+DE+IT+IL V E ++ + T+ G V++ ++ Sbjct: 594 PVHQLPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVS 653 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCNTTG 720 +F R+++ GK A+ L DG+ LI V ++ V+L + +G +RF + VR G +TG Sbjct: 654 DFERIQSNGKRAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTG 713 Query: 721 VRGIRLGEGDKVVSLIVPRG---------------------------------------- 740 VRGI+L D ++S V G Sbjct: 714 VRGIKLAHDDTIISASVLEGFNVDPAERALYLRARAAERGIQGETEDQDTTVEGALSDER 773 Query: 741 -------DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD 793 + ILT T G+GKRT+ EY T R G I ++ +NG VV A V D Sbjct: 774 LLELQEHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKNGHVVNAFPVIPQD 833 Query: 794 QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDT 850 QIM+IT+ G L+R V++I I GR TQGVIL+R +DE VV + R+ E + +D Sbjct: 834 QIMLITNKGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETEEGNVMDA 890 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 91/241 (37%), Gaps = 13/241 (5%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGEDEVMLFS 698 V + G +K+ L+ + GK + + + D + + + + D ++ F+ Sbjct: 526 PSEEMVVTISFGGYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFT 585 Query: 699 AEGKVVRFKESSVRAMGCNTTGVRGIR---LGEGDKVVSLIVPRGDGA----ILTATQNG 751 G+V R + G I + + +K+ S++ + +L T G Sbjct: 586 NIGQVYRIPVHQLPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKG 645 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811 +R AV+++ K + + E ++ + + +++ T G +R ++ Sbjct: 646 QVRRNAVSDFERIQSNGKRAMVL---EDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATD 702 Query: 812 ISI-VGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDD 870 + + GR + GV I+ A D+ ++ + + + A + I E + D Sbjct: 703 VRVFSGRTSTGVRGIKLAHDDTIISASVLEGFNVDPAERALYLRARAAERGIQGETEDQD 762 Query: 871 E 871 Sbjct: 763 T 763 >UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6XXU9_PEDHD Length = 869 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 410/845 (48%), Positives = 585/845 (69%), Gaps = 43/845 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + +I ++I+E+++S+Y+DY+MSVIV RALPDVRDGLKPVHRRVLY M LG NK Sbjct: 7 NQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANNK 66 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 YKKSAR+VG+V+GKYHPHGD++VY+T+VRMAQ +SLRY++V+GQGN+GSIDGDS AAMR Sbjct: 67 PYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSPAAMR 126 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE R KIA +++AD+ K+TVDF N+D + + P V+P+K+PNLL+NGSSGIAVGMATN Sbjct: 127 YTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMATN 186 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 +PPHN+TE IN +AYID+ +I+I LM+ I PDFPT AII G G++EA+ TGRG++ Sbjct: 187 MPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEAFETGRGRIV 246 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 +RA+AE+E A RE IIV EIPYQVNKA++IE+ AELV EK++EGIS ++DES+KDG+ Sbjct: 247 MRAKAEIE--AAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGI 304 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RIV E+KRDA +VLNNL+ QT LQ SF +N +AL G+P+++NL+D+I FV HR EV Sbjct: 305 RIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHYFVEHRHEV 364 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 V RRT FEL +A+ RAHILE L +AL ++D +I+LIR + TP +A+T L+ Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEK-------- 416 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + L++ QA+AILD+ L++LTGLE +K+ DEY EL Sbjct: 417 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNEL 450 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 + I L IL + M++I++EL ++E++GD+RRT I ++ D+++ED I E+VV+ Sbjct: 451 MKTIEYLQSILDDESKRMQIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVI 510 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 T+SH+GY+K P +EY Q RGGKG + + EDFI+ LL+A+ H+++L F+ GR + Sbjct: 511 TISHEGYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFW 570 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT-----EFEEGVKVFMATANGTVK 656 ++VY++PE TR ++GR I N++ + ++E+I A + V E+ E + M T GT+K Sbjct: 571 LRVYEIPEGTRLSKGRAIQNIINIPKEEKIKAFIKVKNLKDQEYLENNYIIMCTKKGTIK 630 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 KT L ++R R G AI + +GD+L+ LT+G E+++ G+ +RF E VR MG Sbjct: 631 KTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGR 690 Query: 717 NTTGVRGIRLG-EGDKVVSLIVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATKGVISI 774 TGVRG+ L E D+VV +I IL ++ GYGKRT + +Y +R KGV +I Sbjct: 691 TATGVRGVTLAHEKDEVVGMIAVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTI 750 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 VT++ G +V V D D +M+I +G ++R VSE+ ++GR TQGV LI ++ + Sbjct: 751 NVTDKTGNLVAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIA 810 Query: 835 GLQRV 839 + R+ Sbjct: 811 SVARI 815 >UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepID=C7H1V9_9FIRM Length = 854 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 390/861 (45%), Positives = 555/861 (64%), Gaps = 43/861 (4%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++++E+++++LDY+MSVIV RALPDVRDGLKPVHRR+LY M+ GND + AY+KSA V Sbjct: 18 RDVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTV 77 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 G V+G YHPHGD++VYD +VR+AQ FSLRY LVDGQGNFGS+DGD AA RYTE R++++ Sbjct: 78 GAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRM 137 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ D++K+T+D+ N+D T+K P V+P + PNLLVNGS GIAVGMATNIPPHNL+EV Sbjct: 138 AVEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEV 197 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 I+GC+AYI+D DI + GLMEHI GPDFPTA II GR GI AY TGRGK+ +R RA +E Sbjct: 198 IDGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEE 257 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 K GR IIV EIPY VNKARLIE IA+LVKEKR+EGIS L DE+++ GMRIVI+V++D Sbjct: 258 -KKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRKD 316 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 A +VVLN LY TQLQ + G+ M+A+ H PK+M LK +I +V + EVV RRT ++L Sbjct: 317 ANPQVVLNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDL 376 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTP-AEAKTALVANPWQLGNVAAMLERAGD 429 +KAR+RAHILE L A +D +I IR +EAK A++ Sbjct: 377 KKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQ---------------- 420 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 + + QA AI+ L+L +L GLE K+ +E L +I + Sbjct: 421 ------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELGSLNAKIRDWE 462 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 IL R++E+++ EL ++ +FGD RRTEI + ++++EDLI +E V TL+ GY+ Sbjct: 463 EILADDARVLEIVKSELLEMKRRFGDDRRTEIETVTGEVDIEDLIAEEQCVYTLTEAGYI 522 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 K Q + Y+AQ+RGG+G S KEED + + V +THD++L + +GR++ +K Y + E Sbjct: 523 KRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAE 582 Query: 610 ATRGARGRPIVNLLPLEQDERITAIL--PVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 +R ++G IVNLL L + E++T +L EG V M T G +K+T L ++ +R Sbjct: 583 GSRTSKGTNIVNLLQLAEGEKVTNMLCQSKDTANEGGFVTMVTKQGLIKRTPLEQYANIR 642 Query: 668 TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG 727 +G + I L +GD L LTSG D +++ + G+ +RF E R MG + GVR I+L Sbjct: 643 KSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMGRSGHGVRAIKLA 702 Query: 728 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787 EGD+VV + + R + ILT T+NG G+R+ + Y +R KG+ + ++ V Sbjct: 703 EGDEVVGVCICRENATILTVTENGKGRRSDIDTYRITARGGKGIRNYDASK--DKVAAVK 760 Query: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 VDD D +++ + G ++R +EI + R GV ++R E++ V+ +A +++ Sbjct: 761 IVDDVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVM---VLARTDHDDE 817 Query: 848 LDTIDGSAAEGDDEIAPEVDV 868 T A EGD+ A ++ Sbjct: 818 AQTETVEAEEGDEPTAEQLAA 838 >UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X523_FLAB3 Length = 884 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 399/853 (46%), Positives = 572/853 (67%), Gaps = 46/853 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + P+NI +E+KSSY+DY+MSVIV RALPDVRDGLKPVHRRVLY M L N Sbjct: 1 MQKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + + KSAR+VGDV+GKYHPHGDS+VYD +VRMAQP+SLRY VDGQGNFGS+DGD AAM Sbjct: 61 RKHLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE +L KI+ E++ADL+K+TVDF +N+D + P VMPTKIP LLVNG+SGIAVGMAT Sbjct: 121 RYTEAKLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+ PHNL+E I+ +AYID+++I+I+ LM+HI PDFPT II G G+ +A+ TGRG++ Sbjct: 181 NMAPHNLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGIIYGYDGVRDAFHTGRGRI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +RA+ E R IIV EIPYQVNKA +I + AELVK++++ GI +RDESD+ G Sbjct: 241 VLRAKINFEEVG--NRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIV E+K DA+ VVLN LY T LQ SF +N +AL G+P+ +NLK+II FV HR E Sbjct: 299 LRIVYELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKGRPEQLNLKNIIHHFVDHRHE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVAL---ANIDPIIELIRHAPTPAEAKTALVANPWQL 417 VV RRT FEL+KA++RAHILE + ++D I +IRH+ PAEAK L+ Sbjct: 359 VVIRRTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKE---- 414 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + L++ QAQAILDLRL +LTG+E +K+ E Sbjct: 415 ------------------------------FDLSDLQAQAILDLRLARLTGMELDKIRAE 444 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 Y E+++ I + IL + R E+I+ EL ++E++GD+RR+EI + ++++EDLI E Sbjct: 445 YDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDE 504 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 VV+T+SH GY+K LSEY+ Q RGG G AA ++EDF++ ++ A H ++L F+ +G Sbjct: 505 KVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIVAATNHQYMLFFTEKG 564 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKV-----FMATAN 652 + + ++V+++PE ++ ++GR + NL+ +E D++I A + + ++ + M T N Sbjct: 565 KCFWLRVFEIPEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVMVTKN 624 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 712 GT+KKT L ++R RT G AI++ D D+L+G LTSG+ E+M+ + GK +RF E R Sbjct: 625 GTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPEEKAR 684 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRG--DGAILTATQNGYGKRTAVAEYPTKSRATKG 770 A+G + GVRGI L + D+V+ +IV + +L ++ GYGKRTAV +Y +R KG Sbjct: 685 AVGRGSIGVRGISLEDDDEVIGMIVVNDVENETVLVVSEKGYGKRTAVEDYRVTNRGGKG 744 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 VI++ +TE+ G ++ V D D +M+I +G +R ++E+ ++GRNTQGV +I + Sbjct: 745 VITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVINLKGN 804 Query: 831 ENVVGLQRVAEPV 843 +++ + +V Sbjct: 805 DSIAAIAKVEMDK 817 >UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7T7_9BACT Length = 885 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 382/912 (41%), Positives = 551/912 (60%), Gaps = 76/912 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDL VNIE+ + ++YL Y++SV VGRA+PDVRDGLKPV+RR+LYAM LG + Sbjct: 1 MSDLGTRDFQVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKS 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 A K ARVVG+V+GKYHPHGD+A+YD +VR+AQ FS+R L++GQGNFG+IDGD AAA Sbjct: 61 HATVKCARVVGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAAS 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+ ++A EL+AD+EK+TV+ + N+D +E P+V+P + P LLVNG++GI VGMAT Sbjct: 121 RYTECRMERLAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +IPPHNL EVI+ + +D+ +++ LME++PGPDFPT AII GR + + Y+TG G + Sbjct: 181 SIPPHNLGEVIDATICLLDNPKATVDELMEYLPGPDFPTGAIIRGRYSMRQFYQTGHGSI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KD 299 IRA+A++ K GRE IIV EIPY + K +L++KIAELV +KR+ GIS LRDES + Sbjct: 241 KIRAKADI--IEKDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRT 298 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMRIVIE+KR A+G VVLN L++ T L+ + G M+ + H +P+ MNL ++ A++ HR Sbjct: 299 GMRIVIEIKRGAMGSVVLNQLFAHTMLETTIGCTMLVVDHNRPRTMNLVQVLQAYIDHRL 358 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EV+ RRT+FEL+KA+ RAHILE L ALANI+ ++++IR + + +A L+A Sbjct: 359 EVIVRRTLFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIAR------ 412 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + T+ Q AILD+RL +LTGL E L EY+ Sbjct: 413 ----------------------------FEFTQIQVDAILDMRLHQLTGLAIETLTAEYE 444 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 EL +I L + S + + VI++EL+ +RE++ D RRTEIT + D+N+ DLI + Sbjct: 445 ELKKRIEYLTALAASREMQLGVIKDELKEIREKYADPRRTEITIDDTDLNIADLIPRHSC 504 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V+T+S+ GY+K P Y Q RGGKG KEED ++ L A++HD I F+ RG + Sbjct: 505 VITVSNTGYIKRVPADTYRTQHRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFM 564 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF---EEGVKVFMATANGTVK 656 Y + VY++PE +R +GR I N++ +E E+I A+L V + + + MA+ G +K Sbjct: 565 YWLNVYEIPEGSRTGKGRAITNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIK 624 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAM 714 K+ L F LR G A+ + + D+LIG ++ +E++L + G F + +R M Sbjct: 625 KSELALFKNLRRVGLRALVIEEDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPM 684 Query: 715 GCNTTGVRGIRLG-EGDKVVSLIVPRG------------------------------DGA 743 G GV G+R EGD VVSL + R Sbjct: 685 GRTARGVTGMRFKIEGDSVVSLEIIREHLYEEPAEDEEGEEVEVEVDVDEEMPVVGSGPE 744 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 803 +L T G GKR+ V+ Y R KGV++IK+ V+ VQ+ + D+I++ T+ G Sbjct: 745 VLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKL-REGETVLSVVQITEEDEILLTTERGQ 803 Query: 804 LVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIA 863 LVR EI VGR + GV ++ + + G+ ++ VD + AE + A Sbjct: 804 LVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLV-EVDVPKSPATEEGGAESSETPA 862 Query: 864 PEVDVDDEPEEE 875 EV V + P E Sbjct: 863 -EVPVAEIPATE 873 >UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA_TREPA Length = 813 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 376/834 (45%), Positives = 533/834 (63%), Gaps = 37/834 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + P++IE E+K +Y+DY+MSVIV RALPDVRDGLKPVHRR+LYAM G ++ +K A Sbjct: 12 LVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCA 71 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VGDV+G +HPHGD++VYD +VR+ Q FSLRY ++ QGNFG+I GD AA RYTE ++ Sbjct: 72 KIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A+IA ++ D++KETV FV N+D ++ P V+P + P LL NGSSGIAVGM TN+PPHNL Sbjct: 132 ARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNL 191 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+ AYI++ ++SI+ L + I GPDFPT II G+ GI ++Y TGRGK+ +RAR Sbjct: 192 REIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQSYETGRGKIVVRARFT 251 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 +E D+K GR+TII E+PYQVN L+ +I EL + K +EGI+ + DE SD+ G+RIV+E Sbjct: 252 IETDSK-GRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVE 310 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K+ +VVLN+L+++T LQ SF + +AL G+P+++ LKD++ FV HR +VVTRR Sbjct: 311 LKKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVRYFVEHRVDVVTRRA 370 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FELRKA++R H++ AL AL ID II LIRH+ AK L Sbjct: 371 HFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQ------------- 417 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + QAQAI+D+++++LTGLE E L E K+L + I+ Sbjct: 418 ---------------------FDFDNVQAQAIVDMQMKRLTGLEVESLRTELKDLTELIS 456 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTLSH 545 L +L S +++ V+++E + + FGD RRT+I +N + +++ED I +E++V+ +SH Sbjct: 457 SLEELLTSPQKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISH 516 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 GY+K P+S Y Q RGGKG S+A + DFI ++ A+THD+++ +SRGR Y +KVY Sbjct: 517 LGYIKRVPVSAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVY 576 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 +PE+ R RG I +LL + DE ITAI+ + EF VFMATA G VKK F Sbjct: 577 GIPESGRANRGSHIKSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVN 636 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +T G +A+KL GD L+ L EDEVML + +GK +R VR MG N++GV GI+ Sbjct: 637 AKTRGIIALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIK 696 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L D V ++ +L T+NGYGKR + +E+ R T G T+R G ++G Sbjct: 697 LTSEDLVAGVLRVSEQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIG 756 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 A+ V D D+ M IT G +R V IS++GR QGV ++ + VVGL V Sbjct: 757 ALAVLDTDECMCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGLSCV 810 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 16/239 (6%) Query: 617 RPIVNLLPLEQDERITA----ILPVTEF-EEGVKVFMATANGTVKKTVLTEFNRLRTAGK 671 R I ++ ++ I + L V +F ++ V + + G +K+ ++ + GK Sbjct: 477 RDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGK 536 Query: 672 --VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG--VRGIRLG 727 + L D + + S D VM ++ G+ K + G G ++ + + Sbjct: 537 GSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMV 596 Query: 728 EGDK----VVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 D+ +VSL + AT G K+ + T+G+I++K++ + Sbjct: 597 ATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAK--TRGIIALKLSG-GDTL 653 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 V AV V D D++M+IT G +R E+ +GRN+ GVI I+ ++ V G+ RV+E Sbjct: 654 VSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTSEDLVAGVLRVSEQ 712 >UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6XJ15_HIRBI Length = 981 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 439/944 (46%), Positives = 610/944 (64%), Gaps = 81/944 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 ++P+NI +E+K SYLDYAMSVIV RALPDVRDGLKPVHRR+L++M+ G ++ Sbjct: 36 FDAGEDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFD 95 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSARVVGDVIGKYHPHGD +VYD +VRMAQ FS+ L+DGQGNFGS+DGD AAAM Sbjct: 96 KAYKKSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAM 155 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE++L K+A+ L+AD++K+TV+F +NYDG+EK P V+P + PNLLVNG GIAVGMAT Sbjct: 156 RYTEVKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMAT 215 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EVI+ +A I+D +I E L+E +PGPDFPT A+I GR G TGRG V Sbjct: 216 NIPPHNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALIIGRAGSRSGLMTGRGSV 275 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R+++ +E K GRE ++ EIPYQVNKA +IEKIAELV++KR+EGI+ +RDESD+DG Sbjct: 276 IMRSKSSIEE-LKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDG 334 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V+EVKRDA EVVLN L+ TQLQ SFG+NM+AL+ G+P++++LK I+ AF+ R E Sbjct: 335 VRVVVEVKRDASPEVVLNQLFRYTQLQTSFGMNMLALNSGRPELLSLKAILQAFIIFREE 394 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV RRT FEL KAR RAH+L LA+A+ANID +I++IRH+P P+ A+ L+ W ++ Sbjct: 395 VVARRTKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDM 454 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 +++ D + G L+E+QA+AILDLRLQ+LTGL +++ DE + Sbjct: 455 LSLINLIADRRTVANEV--------GEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARG 506 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L D+IA+ L IL S R+ME+I EEL +VRE+F RR++ D++ E I +ED+V Sbjct: 507 LADRIADYLDILSSRPRVMEIITEELRVVREEFAIPRRSQFIEAELDMDDEAFIEKEDMV 566 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V +H GY K LS Y Q RGG+G+S KEED + R VANTH +L FSS G VY Sbjct: 567 VMFTHGGYAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVY 626 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGV---KVFMATANGTVKK 657 KV+++P T +RG+ +VNLLPL++ E IT+++P+ E EE + AT +G V++ Sbjct: 627 KTKVWRMPLGTPQSRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRR 686 Query: 658 TVLTEFNRLRTAGKVAIKLVD------GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 711 L++F ++ GK+A+KL + D ++GV + S +D+VML +A G+ +RFK V Sbjct: 687 NKLSDFTQVNRNGKIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDV 746 Query: 712 RA-MGCNTTGVRGIRLGEGDKVVSLIVP---------------------------RGDGA 743 R G +TGVRGIRL GD+V+S++V GD Sbjct: 747 RVFTGRTSTGVRGIRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTE 806 Query: 744 ILTATQ--------------------------------NGYGKRTAVAEYPTKSRATKGV 771 I ++ +G GKR + +Y R KG+ Sbjct: 807 IDVVSEPDADDEGDEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGL 866 Query: 772 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDE 831 I+ K+ + A ++D D+IM++TDAG L+RT +I I GR TQGV ++RT+ +E Sbjct: 867 IAHKLNA-GRRLAAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEE 925 Query: 832 NVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 VV ++R+AE + D + + + + +V +D PE E Sbjct: 926 RVVSVERLAEQESDVDENETEENVDGSAE--IVDVAIDGAPEGE 967 >UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae RepID=C7MEZ8_BRAFD Length = 943 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 363/888 (40%), Positives = 533/888 (60%), Gaps = 57/888 (6%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 IT +++ E++ SYLDYAMSVIV RALPDVRDGLKPVHRR++YAM G ++++ K Sbjct: 68 DRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPDRSFSK 127 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 A+VVG+V+G YHPHGDSA+YD +VR+ QP+S+RY L+ GQGNFGS D AAA RYTE Sbjct: 128 CAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAAAPRYTEC 187 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 ++A +A EL+ D+E++TVD NYD T P V+P + PNLLVNGS+GIAVGMATNIPPH Sbjct: 188 KMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 247 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEH----IPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 NL EV + + + + + L+E I GPDFP+ A I G GIE+AYRTGRG + Sbjct: 248 NLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIVGTSGIEDAYRTGRGSIT 307 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDG 300 RA E GR +++V E+PYQVN L KIAE+VK +++GI+ + DE S + G Sbjct: 308 QRAVVSTEEI--NGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDETSGRTG 365 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 R+VI +KRDAV +VVLNNLY TQLQ +F NM+AL +G P+ +++ + + +H+ + Sbjct: 366 QRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANGVPRTLSIDSFVREWTKHQID 425 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT F LRKA ++ HI AL +D +I LIR +P EA+T L+ Sbjct: 426 VIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLM--------- 476 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 L + E QA AIL ++L++L LE +K+++E+ Sbjct: 477 -------------------------DLLEIDEIQANAILAMQLRRLAALERQKIIEEHDR 511 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L I E IL R +++ EEL + ++FGD RRTEI + D+ +EDLI +ED+V Sbjct: 512 LQALIEEYTAILADPQRQRDIVSEELAEIVDRFGDDRRTEILPFAGDMEMEDLIPEEDMV 571 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT++ GYVK +Y AQ+RGGKG A ++E+D ++ TH +L F+++GRVY Sbjct: 572 VTITRGGYVKRTREDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVY 631 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 K Y+LPEA R A+G+ + NL+ + DE I ++L + +E+ + +AT +G VKKT + Sbjct: 632 RAKGYELPEAPRDAKGQHVANLMAFQPDENIASVLAIDSYEDAQHLVLATESGLVKKTPM 691 Query: 661 TEFNRLRTAGKVAIKLVD--------GDELIGVDLTSGEDEVMLFSAEGKVVRFKESS-- 710 F+ RT G +AI L D D +I + +DE++L S G+ VRF Sbjct: 692 PAFDSSRTGGIIAINLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDGT 751 Query: 711 VRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 +R G T+GV G++ D ++++ V R D ++T T G+ KRT V EY + R G Sbjct: 752 LRPTGRATSGVTGMKFRHQDTLLAMDVIRPDSFVITVTDGGFAKRTTVDEYRLQGRGGLG 811 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 + K+ + G +VGA V++ D+++++ + G +VR++V+E+ GR T GV+ + + Sbjct: 812 IRVAKLPDDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKG 871 Query: 831 ENVVGLQR----VAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEE 874 + ++ + + + E + ID A +D A E D PE Sbjct: 872 DRILLVTTGQESEVDEEEAEAPEIIDADPAGSED--AVENSADAAPEG 917 >UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZEE7_NATMA Length = 861 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 412/867 (47%), Positives = 568/867 (65%), Gaps = 38/867 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + V IE+E++ SY+DYAMSVI GRALPDVRDGLKPVHRR+LYAM+ +G +++KS+ Sbjct: 31 VENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSHRKSS 90 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 +VG+ +G YHPHGDSA+YDT+VRMAQ FS+RY LVDGQGNFGS+DGD AAA RYTE R+ Sbjct: 91 SIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAPRYTEARM 150 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A ++ EL+ D++K+TVDF NYD + PDV+P+ PNLLVNGSSGIAVGM+TNIPPHNL Sbjct: 151 AAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIPPHNL 210 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EVI+ + IDD D ++E LMEH+ GPDFPT A I GR I AY+TGRG++ +RA E Sbjct: 211 GEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIVGRDAIYSAYKTGRGRIRVRAEFE 270 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 VE K GRE I++ E+PYQ NKARL+E+IAE V E +EGIS LRDESD+DG+RIV+E Sbjct: 271 VEE-WKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIVVEC 329 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KR A EVV N L L+ +FG+ +AL GQP++++LK+ + ++ HRREVV RR+ Sbjct: 330 KRGANVEVVKNKLLEN-HLEKTFGVINLALVDGQPQVLSLKETLEEYIAHRREVVRRRSE 388 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 ++L +A DRAHILE A+ N + +++LIR++ T +AK AL Sbjct: 389 YDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQE--------------- 433 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Y + +QA I+ ++L LT +E ++ DEY+++ +I Sbjct: 434 -------------------AYDFSAEQATHIVRMQLGSLTSMEAAEIEDEYEDVQAEIER 474 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L IL S L+ VI++EL +++++ D RRT I + + EDLI +E+V V ++ Sbjct: 475 LTSILESEQELLAVIKDELSEIKDEYDDDRRTSIIEDQGTVTHEDLIPEEEVFVVMTEDD 534 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 YVK P+S+++ Q RGGKG A +KE+D + + ANTHD++LCF+++G+VY +K Y++ Sbjct: 535 YVKRMPISQFDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKTYEI 594 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 PE R ARG+ VN+L L+ E ITAI+ F + V MAT +G VK+T +EF+ +R Sbjct: 595 PEMGRTARGKSAVNILDLDPGEDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIR 654 Query: 668 TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG 727 + G +A L +GDEL+ V++T G ++++ S G +RF E VRAMG N GV GI L Sbjct: 655 STGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAMGRNARGVNGIDLQ 714 Query: 728 EGDKVVSLIVPR--GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 D V L+ + +LT TQNGYGKRT ++EY T+SR KG+I IK ERNG V Sbjct: 715 GDDAVAGLVATDEGDEQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNGPVTT 774 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 A V DQ++M+++ G +VRTRV EIS VGRNT GVI++ + + V + V V E Sbjct: 775 AKAVSADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVDVVPAAVSE 834 Query: 846 EDLDTIDGSAAEGDDEIAPEVDVDDEP 872 D D D EG +E V+ D Sbjct: 835 ADDDGEDEDEDEGQNEDTETVEADAAN 861 >UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphaproteobacteria RepID=Q2NAD1_ERYLH Length = 931 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 417/933 (44%), Positives = 583/933 (62%), Gaps = 72/933 (7%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + ++I +E+K+SYLDYAMSVIV RALPDVRDGLKPVHRR+L+A G + Y+KS Sbjct: 3 DYERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKS 62 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A++VGDV+G YHPHGDSA+YD + RM Q +SLR L+DGQGNFGS+D D A+MRYTE R Sbjct: 63 AKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEAR 122 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 LAK+A+ L+ DL+K+TVDF DNYDG+ K P V+P + PNLLVNG+ GIAVGMATN+PPHN Sbjct: 123 LAKVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHN 182 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+GCLA+I + I+ E LM++IPGPDFPTA +I G+ G AY TGRG V +RAR Sbjct: 183 LGEVIDGCLAFIANPAITSEELMQYIPGPDFPTAPLILGQAGARAAYTTGRGSVLMRARH 242 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 E+E + R++I+ IPYQV K+ L+EKIA+ KEKR+EGIS +RDES ++G+R+V++ Sbjct: 243 EIEE-KRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVD 301 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KRDA EVVLN ++ T Q SF NM+A+ G+P+++ L+DI+ AFV R EV+TRRT Sbjct: 302 LKRDASPEVVLNQIWRYTPAQASFPANMLAIKGGRPEVLTLRDIVQAFVSFREEVITRRT 361 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL KAR+RAH+L L VA++N+D ++ +IR + P A+ L A W +G++A ++ Sbjct: 362 KFELNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQL 421 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 E +EP G Y L+E+Q +AILDLRL +LT L +++ DE KEL +I Sbjct: 422 I-------EAIEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIE 474 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 E L IL +L V+++EL +++++ R +EI + EDLI +ED+VVT++H Sbjct: 475 EYLSILADRGKLFGVLQDELVEIKDEYATPRVSEIAPAWDGLEDEDLIAREDMVVTVTHG 534 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K PL+ + AQ RGGKG+S K+ED + L V +TH+ +L F++ GRVY MKV++ Sbjct: 535 GYIKRTPLATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWK 594 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEF 663 LPE + +GRP+VNLLPL DER+T +L + E EE + + AT G V++ + F Sbjct: 595 LPEGSPTTKGRPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAF 654 Query: 664 NRLRTAGKVAIKLVD--GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTG 720 + T GK A+ V+ GD LIGV+L S + E+ L S GK +RF + R G Sbjct: 655 TNVPTGGKYAMGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIG 714 Query: 721 VRGIRLGEGDKVVSLIVPR-------------------------------------GDGA 743 VRG+ L + KVVS+ V G+ Sbjct: 715 VRGMTLKDDAKVVSMAVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEEGEEF 774 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKV----TERNGLVVGAVQVDDCDQIMMIT 799 ILT T NGYGK ++ EY T R +G+ +I ERNG VV + V Q+M++T Sbjct: 775 ILTLTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGSQLMLVT 834 Query: 800 DAGTLVRTRVS-------------EISIVGRNTQGVILIRTAEDENVVGLQRV---AEPV 843 D L+R + S+ GR + GV + A+ E++VG + EP Sbjct: 835 DQAKLIRMPIEFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVGAAIIDETEEPE 894 Query: 844 DEEDLDTIDGSAAEGDDEIAPEVDVD-DEPEEE 875 +E + ++G G +E AP+ +D D E E Sbjct: 895 NEAEEAVVEGMVGRGAEETAPDPTMDRDSNEGE 927 >UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=Cyanobacteria RepID=A8G5D2_PROM2 Length = 865 Score = 908 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 360/879 (40%), Positives = 524/879 (59%), Gaps = 66/879 (7%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 +S+ I ++ E+ SYL+YAMSVIVGRALPD RDGLKPVHRR+LYAM LG Sbjct: 12 LSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSG 71 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + Y+K ARVVG+V+GKYHPHGD+AVYD +VRMAQ FS+R L+DG GNFGS+D D AAM Sbjct: 72 RPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAM 131 Query: 121 RYTEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 RYTE RL + E L+ D+E ETVDF DN+DG+++ P V+P +IP LL+NGSSGIAVGMA Sbjct: 132 RYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMA 191 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TNIPPHNL E+ING + I + I L E I GPDFPT I GR GI E ++TG+G Sbjct: 192 TNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGREGIRETFKTGKGS 251 Query: 240 VYIRARAEVEVDAKTGR---ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 + +R A +E GR + +I+ E+P+Q NKA LIE+IA+LV EK++EGIS +RDES Sbjct: 252 ITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDES 311 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 D+DGMRIVIE+KRD+ +VVLNNL+ T LQ +F N++AL G+P ++L+ ++ F+ Sbjct: 312 DRDGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLD 371 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R E + RRT F L+KA +R HI++ L +AL +D II LIR A A+ L Sbjct: 372 FRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEH-- 429 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 L+ Q+ AIL ++L++LT LE +K+ + Sbjct: 430 --------------------------------KLSSIQSDAILQMQLRRLTALEADKIKE 457 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 E+ EL +I +IL S +R+ E+I EEL + +F R+TEI ++ DLI Sbjct: 458 EHNELTRKINLYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIAN 517 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + VV L+ GY+K P++++E+ RG +GK+ + KE+D + + N HD +L FS R Sbjct: 518 DRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDR 577 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G Y++ Y++P ++R A+G P V LLP+ ++E+IT+++ V F + + M T G +K Sbjct: 578 GVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFIK 637 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF--KESSVRAM 714 +T L+ F+++R+ G +AI L DGD L V L+ D V++ S G + F + +R + Sbjct: 638 RTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPL 697 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVP--------------------------RGDGAILTAT 748 G GV+ + L EGD +VS+ V +L A+ Sbjct: 698 GRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGPWVLIAS 757 Query: 749 QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR 808 G GKR VA++ + RA G+ +IK ++ +V + + ++++++T+ G +VRT Sbjct: 758 AFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLKVLGEGEELLLVTEKGVIVRTN 817 Query: 809 VSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 +IS R GV L R + +++ + V E Sbjct: 818 ADKISQQSRAATGVKLQRLDDGDHLSEVVLVPREQIEGK 856 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 92/518 (17%), Positives = 185/518 (35%), Gaps = 54/518 (10%) Query: 384 AVALANIDPIIELIRHAPTP--------AEAKTALVANPWQLGNVAAMLERAGDDAARP- 434 +ANI+ I + R K AL+ L N + + Sbjct: 254 MRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313 Query: 435 ---------EWLEPEFGVRDGLYYLTEQQAQA---ILDLRLQKLTGLEHEKLLDEYKELL 482 + V + L+ LT Q IL L + T L K+LD + + Sbjct: 314 DGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFR 373 Query: 483 DQ--IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 + +L A+ +++ L + D+ I + I+ + + E + Sbjct: 374 VETIRRRTAFLLKKAEERDHIVKGLLLALDAM--DEIINLIRSAKDSISAREKLQNEHKL 431 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 ++ Q + + Q R A +IKEE + N + IL +S+ R++ Sbjct: 432 SSI--------QSDAILQMQLRRLTALEADKIKEE-HNELTRKINLYQQIL--NSKERIF 480 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + + +L + +L L ++ V + T G +K+ + Sbjct: 481 EIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIA-----NDRSVVLLTEAGYLKRMPV 535 Query: 661 TEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 +F GK K + D++ + D ++LFS G V Sbjct: 536 NDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTA 595 Query: 719 TG---VRGIRLGEGDKVVSLIVPR---GDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 G V+ + + +K+ SL+ D +L T+ G+ KRTA++ + + G+I Sbjct: 596 KGTPSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIR--SNGLI 653 Query: 773 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV--RTRVSEISIVGRNTQGVILIRTAED 830 +I + E + + D +++ + G + R ++E+ +GR +GV + E Sbjct: 654 AINL-EDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREG 712 Query: 831 ENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDV 868 +N+V + + + ++ D + D+ D Sbjct: 713 DNLVSMDVLTSNLVDQLAKIEDLTEDLDDNVEENSSDG 750 >UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH72_9BACT Length = 859 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 391/890 (43%), Positives = 549/890 (61%), Gaps = 52/890 (5%) Query: 1 MSDLARE---ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGN 57 MSD ++ +TP IE+ L +YL Y+MSV VGRA+PDVRDGLKP RRVL+AM+ L Sbjct: 1 MSDNQQDFSTVTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNL 60 Query: 58 DWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 117 +Y K ARVVGDVIGKYHPHGD +VYDT+VRMAQ FS+R ML+DGQGNFGSIDGDSA Sbjct: 61 RKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDGDSA 120 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RYTE R+ ++A EL+ DL+K TVD +DG++ P V+P + PNLLVNG++GI VG Sbjct: 121 AAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVG 180 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 MAT+IPPHNL EVIN +A +D I+IE +M+H+PGPDFPTA I G GI Y TGR Sbjct: 181 MATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISIGFDGIRRLYETGR 240 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-S 296 G V++R RAE+ K GRE I++ EIPY VNK +++KIAELV K + GIS+L DE S Sbjct: 241 GGVHLRGRAEI--IEKNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESS 298 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 + G+R+V+ +K +A+ VV+N LY TQL VS G + + + QPK +NLK ++ A++ Sbjct: 299 SRVGIRVVVGIKTNAMATVVINQLYKHTQLAVSIGCQFLVVDNKQPKTLNLKQLLQAYLD 358 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 HR EV+TRR FEL KA RAHILE L A+ +ID +I++IR + +A L Sbjct: 359 HRLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKER--- 415 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 + L+ +QA+AILD+RL +LTGL ++L Sbjct: 416 -------------------------------FELSNEQAKAILDMRLSQLTGLAIDELTA 444 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 EY+EL+ +IA +L + ++V++EEL VR++F D+RRTE+ DIN EDLI + Sbjct: 445 EYEELMKRIAHYRELLANRQMRLDVVKEELIEVRDKFADERRTEMRPGERDINYEDLIAR 504 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 +T+S++GY+K P Y Q RGGKG K++DF+ +L A THD+I+ F++ Sbjct: 505 ASATITISNEGYIKRVPTEIYRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNF 564 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE-GVKVFMATANGTV 655 GR++ +KVY +PEATR ++G+ +VNLL E+ E + A++ V + ++ + M+T NG V Sbjct: 565 GRMHWLKVYDIPEATRVSKGKAMVNLLEFEKGEYVRAMISVDKVDDEDRFIMMSTRNGVV 624 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 KKT L F +R AI L + D+LI LT G +++L + EG FKES R G Sbjct: 625 KKTALAAFKNMRKKPIKAIVLDEDDDLIEAKLTDGNKKIILSTREGIACHFKESDCRTQG 684 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 T G RGIRL E D+VV++ + IL T G GKR+ V +Y R KGV +IK Sbjct: 685 RVTRGCRGIRLSESDQVVAMSIVEESEDILVVTAKGMGKRSCVDDYRLTKRGAKGVRNIK 744 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE-DENVV 834 + + VV + ++D D+I+M T G +VR I +GR +QGV +++ + + ++ Sbjct: 745 L-KEGDYVVEVMMIEDTDEIIMTTMEGLMVRISAEPIRSLGRASQGVTIMKFKKASDLII 803 Query: 835 GLQRVAEPVDEE---------DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 RV E ++ + + EG + A + +E +E Sbjct: 804 SASRVVEVEADKDEENEEGEDSENAESANTEEGSEAPAESAEQAEESSDE 853 >UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH3_9BACT Length = 854 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 399/864 (46%), Positives = 548/864 (63%), Gaps = 36/864 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 T V+I+EE++++YL+Y+MSVIVGRALPD RDGLKPV RRVL+AM+ +G AY+K Sbjct: 10 PRETTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRK 69 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VGDVIGKYHPHGD+AVYDT VR+ QPF+LRY L+DGQGNFGS+DGD+ AAMRYTEI Sbjct: 70 SARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEI 129 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL ++A E+MA+L++ETVD+ NYD + + P V+P +P LL+NGSSGIAVGMATNIPPH Sbjct: 130 RLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPH 189 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 N+TEV+N L +D+ + + LM + GPDFPT +I GR GIE AYRTGRG + +R Sbjct: 190 NITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVILGRSGIESAYRTGRGSIVMRGV 249 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 EVE ++ R+ +++ EIPY VNKARLIEKIAELV+EK++E I+ +RDESD+DGMRIV+ Sbjct: 250 VEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMRIVV 309 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+KR+A+ +++N L+ T LQ SFG N V++ +G+P+ ++L + F+ R++VVTRR Sbjct: 310 ELKREAIPRIIMNQLFLLTPLQSSFGYNAVSIVNGRPETLSLSQTLRVFLGFRKDVVTRR 369 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T+F LRKAR+R HILE L A+ ID II LIR + +P EA+ LV Sbjct: 370 TLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLV-------------- 415 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + +E QAQAILDLRLQ+LTGLE EK+ EY+E+ I Sbjct: 416 --------------------STFAFSELQAQAILDLRLQRLTGLEREKIEAEYREVAALI 455 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 A L IL S + L+EVIR+E ++ E+FGD RRT I + ++ E LI E +VTLS+ Sbjct: 456 ASLEAILASREALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVTLSY 515 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 +GY+K P + QRRGGKG+ +KE+D + L A HD +L F+ G+VY +K Y Sbjct: 516 EGYIKRMPDAVLPTQRRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRLKTY 575 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 +LPEA R ARG+ +++LL L DER+ AILPV FE + T G KKT L+E+ Sbjct: 576 ELPEAQRTARGKHLLSLLSLSPDERVAAILPVRSFEGDNLLLFGTVKGYFKKTRLSEYAN 635 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 +R G +A L +GD L V + + +++ + G +RF+ ++R G T GVR IR Sbjct: 636 IRQGGLIATVLEEGDRLARVLVLHPDRRLLVATRGGMSIRFEADNIRPTGRATRGVRAIR 695 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L D VVS +L T+ G+GKR + + R KGV KVT G VV Sbjct: 696 LSPDDSVVSFEEVSDSDLLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTPETGAVVA 755 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE--DENVVGLQRVAEPV 843 ++V + D I ++TD G ++R EI VGR +GV L+ ++ E +V + Sbjct: 756 ILKVTERDDIDVVTDTGRVIRIPSEEIRKVGRGAKGVKLVSLSDSPQETIVCAAINPKRE 815 Query: 844 DEEDLDTIDGSAAEGDDEIAPEVD 867 ++ + E Sbjct: 816 PTPLEAYLEKEPTGRESRGEEEDP 839 >UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5P0_9BACT Length = 836 Score = 899 bits (2323), Expect = 0.0, Method: Composition-based stats. Identities = 361/853 (42%), Positives = 519/853 (60%), Gaps = 38/853 (4%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D +T + EE+K SYLDYAMSVIVGRALPD RDGLKPV RR+LYAM LG N+ Sbjct: 6 DNLGRVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQP 65 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 YKKSARVVG+ +GKYHPHGDSA+Y+T+VR+AQ +S+RY LVDGQGNFGSIDGDSAAAMRY Sbjct: 66 YKKSARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRY 125 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R A+ ++AD++++TVD+ N+D + K P +P+ +PNLL+NGS+GIAVGMATN+ Sbjct: 126 TEARFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNM 185 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PHNL EV++ I D ++ LM +PGPDFPT II GR GI +AYRTGRGK+ + Sbjct: 186 APHNLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIMGREGILDAYRTGRGKIIL 245 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 R + VE ++ + +++ EIPY +NK LIE I + V+ K+++G+S +RDESD+ G+R Sbjct: 246 RGKCHVEQKSR-SKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLR 304 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +V+E+ R+A E+V LYS+T LQ +FGI +AL +P +NLK ++ F+ +RR VV Sbjct: 305 LVVELTREADAELVQRQLYSRTSLQSTFGIINLALVDNKPVELNLKQLLETFLNYRRSVV 364 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT F L KA R HI+E L AL ID +I +IR A T +AK L+ Sbjct: 365 RRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLIGE--------- 415 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 T+ QAQAILD+RLQ+LTGLE EKLL E +LL Sbjct: 416 -------------------------LAFTDLQAQAILDMRLQRLTGLEREKLLAELAQLL 450 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDVV 540 I IL + L VI +EL +R +F D+RRTE++A + +LEDL+ +ED++ Sbjct: 451 ADIERYRSILDNPSVLDGVINDELGELRRKFADERRTELSAALPTEGDSLEDLLPEEDIL 510 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLS G+++ PL Y Q RGGKG+ A +K++D + ++ V +TH I F+SRGRV+ Sbjct: 511 VTLSKDGFLRRSPLENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVF 570 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 +++ + +PE +GR + + L DER+ A+ E + T G K+ Sbjct: 571 AIRGHMIPETK-TGKGRAVSKFVSLTDDERVVAMRGTLEETATSHLLFITKRGIGKRMDA 629 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E L AG+ + L DGDE+ + T G +V+L +++ K ES R MG G Sbjct: 630 EELENLTRAGRRVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPMGRAARG 689 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+ ++L D++++ D +L ++ G GKRT E+P R + GV ++ + R Sbjct: 690 VKAMKLAPDDRIIAAWTVAPDENLLLVSETGIGKRTKPEEFPIHHRGSGGVQAMHLGART 749 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G + AV V D++ ++T+ G ++R S+I ++ R G I++R + + + + + Sbjct: 750 GRLAAAVGVASSDEVGLMTEKGRMIRLSASDIPLLSRTATGSIVLRLNDGDLLASVSVIP 809 Query: 841 EPVDEEDLDTIDG 853 P+ E L D Sbjct: 810 APMAPESLTDADP 822 >UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYRA_MYCGA Length = 846 Score = 898 bits (2320), Expect = 0.0, Method: Composition-based stats. Identities = 384/870 (44%), Positives = 566/870 (65%), Gaps = 46/870 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + +I +EL++S+++YAMSVIV RALP+ RDGLKPVHRRVLY G +K Y+KSA Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++VG V+GKYHPH DSA+Y+T+VRMAQPFSLRYML+DG GNFGSIDGDSAAAMRYTE RL Sbjct: 78 QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +KI+ E++ +++K+TVDFVDNYD +E+ P V+P+ PNLL NGSSGIAVGMATNIPPHNL Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 +E+I G + +E+ +IE L E I GPDFPTAA I G GI E + TGRG V +RA++E Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E + I++ +IPY VNKA LI KIAELVK ++++GI+ LRDES+++G+RIVIE Sbjct: 258 IEE-LANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIET 316 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KRD + EV+LN LY TQLQ +F + M+AL + QPK++NLK+ + ++ H+ +++ R+T Sbjct: 317 KRDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTN 376 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 FEL+KA+ AHI+E L +A NID +IE I++A +AK L+ Sbjct: 377 FELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTK-------------- 422 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Y L++ QA+AILD+RL+ L+GLE E L E +L + I + Sbjct: 423 --------------------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKD 462 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITAN-SADINLEDLITQEDVVVTLSHQ 546 L IL + +R +++I ++L+ + +FGD+RRT+I ++ I+ E LI E VV+T S + Sbjct: 463 LEEILQNKERRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSK 522 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K P+S Y+ Q RGG G E+D ++ L+V +TH +L F++ G+VY ++ +Q Sbjct: 523 GYLKRIPISAYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQ 582 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P +R ++G P +NL+ +E+DE++ ++L + +++ G F +T G VK+ +EF+R+ Sbjct: 583 VPLGSRISKGIPAINLISIEKDEKLMSLLSINDYDSG-YFFFSTKKGLVKRVKASEFSRI 641 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 + GK+AIKL + D L V T+G++E+ + + G +VRFKE VR+MG GV G++ Sbjct: 642 QNNGKIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKF 701 Query: 727 G-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 D+V+ L +L + G GK T EY +R +KGVI+IKVT + G ++ Sbjct: 702 KNPNDEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNIIN 761 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 V+ ++++MI+ G +VR ++E+S GRNT GV LI E E + + D+ Sbjct: 762 TQLVNGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVAIFDVEQDD 821 Query: 846 EDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 S G D E+ DD +++ Sbjct: 822 --------SQQVGSDNPDTELSSDDSNQDQ 843 >UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia RepID=B2URM6_AKKM8 Length = 873 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 380/889 (42%), Positives = 546/889 (61%), Gaps = 36/889 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I PV++ EL +S+LDY+MSVI+ RALPDVRDGLKP RR+LYAM L + Sbjct: 3 NNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKTR 62 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K +++VGD +G YHPHGD+A+Y T+V MAQ +S+R +LV GQGNFG+ DGD AA RYTE Sbjct: 63 KCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYTE 122 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +L+ + LMADL+K+TVDFV YD P V P+ PNLLVNG +GIAVGMATN+PP Sbjct: 123 AKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMPP 182 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EV++G A ID+ +++E L ++I GPDFPT + G GI+ +RTGRG V IR Sbjct: 183 HNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGFSGIDNYFRTGRGSVRIRG 242 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + ++EV +G++ +I+ E+PY VN+A L E+IAEL K+K + IS +RD SD+ I Sbjct: 243 KIDMEV-TDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTC-IE 300 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KRDA +VV+N LY T ++ SF +NM+A+H +PK + + D I ++ HRREVV R Sbjct: 301 IELKRDARPQVVMNQLYKLTSMETSFAVNMLAIHDNRPKTLAMMDAINFYIEHRREVVVR 360 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT + L A A LEA +AL ++D I +IR + EA+ L + ++ Sbjct: 361 RTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLG 420 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + ++ Y TE+Q +ILDLRL +LT LE++K+ EY ELL + Sbjct: 421 ILI----------RSQASIQGDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVR 470 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I + L IL + R++ ++++EL+ +++++ R T I S D+ +EDLI + ++VT++ Sbjct: 471 IKDYLDILANESRVLGIVKDELKAIKDKYATPRVTRIIPFSGDMAIEDLIPNDTMIVTIT 530 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIK------EEDFIDRLLVANTHDHILCFSSRGR 598 H GY+K +EY Q RGGKG AA + E DFI+ L A HD+++ F++ GR Sbjct: 531 HSGYIKRTNSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGR 590 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGV-----------KVF 647 VY +VY++ EA R A+GR I NLL L+ +E I AIL + + V Sbjct: 591 VYVDRVYEIDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVV 650 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 AT +GTVKKT L +F R AG +AI L +G+ L+ +LTSG DE++L + +G +RF Sbjct: 651 FATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFP 710 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 E +R G NT GVRGIR GD VV+L + +L A++NG GKRT+ EY T+ R Sbjct: 711 EEDLRTQGRNTIGVRGIRPRAGDYVVALAIVDPQKTLLVASENGLGKRTSFDEYRTQGRG 770 Query: 768 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 G+ ++ T++ G VV A V D D++M++T AG VR +V+ + GR TQGV L+ Sbjct: 771 GTGIKTMNCTDKTGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTL 830 Query: 828 AEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVD-DEPEEE 875 E E++ + V ++E+ AE +D A EV + + P EE Sbjct: 831 NEGESIQDISIVIPDDEDEEAP------AETEDAGAGEVSGEMEAPAEE 873 >UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales RepID=GYRA_HELPJ Length = 828 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 398/854 (46%), Positives = 572/854 (66%), Gaps = 42/854 (4%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 + + I V I+ ++ SYL Y+MSVI+GRALPD RDGLKPVHRR+LYAM+ LG A Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 YKKSAR+VGDVIGKYHPHGD+AVYD +VRMAQ FS+R LVDGQGNFGSIDGD+AAAMRY Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R+ K + E++ D++K+T+DFV NYD T K PD++P+++PNLLVNG++GIAVGMAT+I Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPH + E+I+ + + + ++ ++E + GPDFPT II G+ GI EAY+TGRG+V + Sbjct: 187 PPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKV 246 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 RA+ VE +E I++ E+P+Q NKA+L+E+I++L +EK++EGIS +RDESD++G+R Sbjct: 247 RAKVHVEKTK--NKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIR 304 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +VIE+KRDA+ E+VLN+LY T ++ +F I ++A+++ +PKI L +++ F+ HR+ ++ Sbjct: 305 VVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTII 364 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRTIFEL KA+ RAHILE +AL NID I+ LI+ +P+P AK AL+ Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIER--------- 415 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + L+E Q++AIL++RLQ+LTGLE +K+ +EY+ LL Sbjct: 416 -------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLL 450 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 + I +L IL S DRL EV++ EL V+EQF RRTEI + I+ EDLI E +VV+ Sbjct: 451 ELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVVS 510 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 +S++GYVK L YE Q RGGKGK + E+DFI+ VANTHD +L +++G++Y + Sbjct: 511 MSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHL 570 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 KVY++PEA+R A G+ IVNL+ L +E+I A L +F + + T NG VK+T L+E Sbjct: 571 KVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSE 630 Query: 663 FNRLRTA-GKVAIKLVDGDELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 F R+ G AI L +GDEL+G + +++ S G ++F VR +G T G Sbjct: 631 FGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRTTRG 690 Query: 721 VRGIRLGEGDKVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 V GIRL E D VV +V D +L+ ++NG GK+T Y +SR KGVI +K+T++ Sbjct: 691 VMGIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK 750 Query: 780 NGLVVGAVQVDDCD-QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 G +V + VDD + +M++T + ++R + +I GRN GV LI TA + VV + Sbjct: 751 TGNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNS 808 Query: 839 VAEPVDEEDLDTID 852 + + E+L+T Sbjct: 809 CPKEEEPENLETSS 822 >UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia RepID=B1ZTK3_OPITP Length = 830 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 373/861 (43%), Positives = 536/861 (62%), Gaps = 46/861 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + +++ NI + ++++Y+DY+MSVI+ RALPD RDGLKPV RRVLYAM G N Sbjct: 1 MYTASEKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +A+ K A VVG+V+ YHPHGDS+VYDT+VRMAQP+ +RY L+D QGNFGS+DGD AAA Sbjct: 61 RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAY 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL IA +L+ D+E++TVDF NY + P V+P +PNLL+NGS+GIAVGM T Sbjct: 121 RYTECRLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL E+I+ A ID+ IS++ L + GPDFPT +I GR GI +TG+G V Sbjct: 181 NIPPHNLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIAGREGILSYLKTGKGIV 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 R +A E K G E I+V EIPY VN+A L+ +IAELV +K+++GI LRDESD++ Sbjct: 241 RTRGKAHTEEM-KGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDENT 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 RIVIE+KR +VV+N L+ +T L+ SFG+ ++AL +PK MN+K++I ++ HRRE Sbjct: 300 -RIVIELKRGEQSKVVINQLFQKTALESSFGVTLLALDKKRPKQMNIKELIECYIEHRRE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VVTRRT F L++A DRAHILE +AL N+D +++IR + EAK L+A Sbjct: 359 VVTRRTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAK------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y L+E+Q AIL+LRL +LTGLE K+ EY E Sbjct: 412 ---------------------------YPLSERQTDAILELRLYQLTGLERGKIEAEYLE 444 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L+ I EL IL S +L+ +I++EL ++E++ RRTEI A + + +ED+I E V Sbjct: 445 LMKLIEELRGILESEPKLLALIKKELAEMKEKYTSPRRTEIIAAAGEFRMEDVIPNEGCV 504 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T+SH G++K P++EY +QRRGGKG A EEDF+ L A+THD+IL F+S G+ + Sbjct: 505 ITVSHLGFIKRTPVAEYRSQRRGGKGVIGAETYEEDFVANLFTASTHDYILFFTSIGQCH 564 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + KVY +PE TR ++G+ + + L L + E+I A+L V +F E + AT G +KK+ L Sbjct: 565 AKKVYDIPEGTRASKGKSVSSFLRLAEGEKIAAMLCVKDFAEDRYLVTATKRGIIKKSAL 624 Query: 661 TEFNR-LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS-------VR 712 +++ R G + I L + D +IG LT+GE+E++L S +G VRF+E R Sbjct: 625 SDYANATREGGLIGINLQEADSVIGTVLTTGENELILVSHQGLAVRFRERDPESGEELFR 684 Query: 713 AMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 A G T GV G+R + D + + V + L A++ G G RT +Y +R GV Sbjct: 685 ATGRATGGVTGMRFKLKSDYLDVIEVVDHEAKFLVASEAGLGVRTRFEDYRLINRGGSGV 744 Query: 772 ISIKVTERNG-LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 +I + E + GA+ V + D++M++T G +R V +I R +GV L+ Sbjct: 745 WAIDLPEDGSIKLAGALSVREDDEVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPG 804 Query: 831 ENVVGLQRVAEPVDEEDLDTI 851 + ++ + R+ E +E + Sbjct: 805 DKLLSIARIVETEEESGAEAT 825 >UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepID=C6RQR3_ACIRA Length = 985 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 506/982 (51%), Positives = 644/982 (65%), Gaps = 113/982 (11%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 EI P+ IE+ELK SYLDYAMSVIV RALPDVRDGLKPVHRRVLYAM+ LGND+NKAYKK Sbjct: 4 SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVGDVIGKYHPHGDSAVY+TIVRMAQ FSLRY LVDGQGNFGS+DGDSAAAMRYTE+ Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R+ K+ HE++ADLEK+TVD+ DNYDG+E+IP VMPT+IPNLL+NG++GIAVGMATN+ PH Sbjct: 124 RMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPH 183 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 N+TEV+N CLAY D+ +IS+EGLME+I GPDFPT II G+ GI +AYRTG+G+++IR + Sbjct: 184 NMTEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E D KTGR TI+ EIPYQVNKAR+IE+IAELVKEK++EGIS LRDESDKDGMRI I Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 ++KR EVV+NNL+ TQL+ SF INMV L +GQPK+MNLKDIIAAF+RHR+EVVTRR Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T++ELRKAR+R HILE L VALANID II+ I+ + PAEA+ L+A W G V AMLE Sbjct: 364 TMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLE 423 Query: 426 RAGDDAARPEWLEPE-----FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 RAG + RP+ +E E FG+ +Y L+ Q AIL+LRL +LTGLE +KL EY E Sbjct: 424 RAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSE 483 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 +L QI EL IL + LM VI+EEL LV +Q+GD RRTEI + D + EDLI +E VV Sbjct: 484 ILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESRIDFSREDLIPEEQVV 543 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T+S GY K QPLS+Y AQRRGG+GKSA +KE+DFI L+V + H +LCF++ G+VY Sbjct: 544 LTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVGKVY 603 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT-- 658 ++V+++P+A+RG+RGRP++NLLPL+ +E ITAILPV + + +A VK Sbjct: 604 RLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTERLAAFKNFVKTNTV 663 Query: 659 ------------------------VLTEFNRLRTAGKVAIKL-----VDGDELI-----G 684 E + + + DE+I Sbjct: 664 KLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEIIIEFAQQ 723 Query: 685 VDLTSGEDEVMLFSAEGKVVRFKES----------------------------------- 709 + V + +A G V R + Sbjct: 724 AESVRKNYYVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQIML 783 Query: 710 -------------SVRAMGCNTTGVRGIRLGEGDK------------------------V 732 VRAMG + GVRG+R+ + + Sbjct: 784 FSNEGKAIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVSRI 843 Query: 733 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 VSL+V G +L A+ NGYGKRT V ++PTK R KGVI+IK +ERNG +VGAV +D+ Sbjct: 844 VSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDET 903 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTID 852 ++M+I+D GTLVRTR +E++ GRN QGV LIR E E +VG+ + ++E Sbjct: 904 KELMLISDGGTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVGVVSIEAVEEDEVEAFET 963 Query: 853 GSAAEGDDEIAPEVDVDDEPEE 874 + E + E + E+ Sbjct: 964 VESTEQLEVEKTETEHQQPQED 985 >UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0S912_LEPBA Length = 843 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 385/845 (45%), Positives = 545/845 (64%), Gaps = 39/845 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + PV IE+++K +YLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMN ++ Y KS Sbjct: 34 RVIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKS 93 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A++VG+VIG YHPHGDSAVY+T+VRMAQ FS+R L+DGQGNFGS+DGD+AAA RYTE R Sbjct: 94 AKIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEAR 153 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L K+A EL+ D+EK TV F N+D T + PDV+P PN+LVNGS+GIAVGMATNIPPHN Sbjct: 154 LTKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHN 213 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L E +N +A I + DI++ LM+ +PGPDFPT I G G+ +AY TG+G + IR++ Sbjct: 214 LKEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIGGEGLYQAYATGKGSIRIRSKV 273 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 ++ ++ GRE I++HEIPYQVNK ++EKI +LV EK +EGIS + D SD+ G+R+ I Sbjct: 274 DI-IENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIH 332 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 VK+DA +V+LN L+ TQLQVS+GI M+A+ +PKI +LK+I+ ++ HRREVV +RT Sbjct: 333 VKKDANAQVILNQLFKLTQLQVSYGITMLAILDNRPKIFSLKEILKSYAEHRREVVVKRT 392 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F+L KA+ RAHILE L +AL NID +I +IR + EA+++L+A Sbjct: 393 EFDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMA-------------- 438 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + L+E QA AIL++RLQ+LT LE +K++DE +++ IA Sbjct: 439 --------------------TFSLSELQADAILEMRLQRLTSLEVQKIIDELEQVRILIA 478 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD---INLEDLITQEDVVVTL 543 +L IL DR+ +I +EL V + FG+ R TEI+ S + N EDLI E+VVV L Sbjct: 479 DLEDILSKPDRVKSIICDELGKVSQSFGNTRTTEISLESLESSTFNAEDLIADEEVVVQL 538 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S ++K P+ + Q+RGGKG K EDF+ +L A THD+++ FS++GR + +K Sbjct: 539 SEDMFIKRLPMDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHDNLMLFSNKGRAFLLK 598 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 VY+LP AT+ ARG+ + ++ L DE IT++ F+E + M T G VKK L EF Sbjct: 599 VYELPIATKEARGKSLKAVINLNDDEIITSLFTFRNFDES-YLLMVTREGFVKKIQLDEF 657 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + +G +AI L DGDELI V +V + S G +R + +R+ G +GV Sbjct: 658 TNTKKSGIIAIGLRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRSQGRTASGVTA 717 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 ++L + D + + + + ++NG+GKRT E+ TK R KG+ +K+ E+NG Sbjct: 718 MKLEDDDSIAGITKVEPNTNLFCISENGFGKRTDFEEFSTKGRGGKGMTYLKIGEKNGRA 777 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 VG V + D++++IT +G +R V IS+VGR+ GV ++ T +++ V V E Sbjct: 778 VGISSVKEEDELLVITQSGMAIRVEVKTISMVGRSAMGVKVVNTKDEDFVKDFAVVRESD 837 Query: 844 DEEDL 848 + Sbjct: 838 SDSAE 842 >UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GYRA_MYCPN Length = 839 Score = 887 bits (2291), Expect = 0.0, Method: Composition-based stats. Identities = 367/854 (42%), Positives = 521/854 (61%), Gaps = 38/854 (4%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I +++ EL+ S+++YAMSVIV RALPD RDGLKPVHRRVLY G ++ +KKSA Sbjct: 20 IKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRPFKKSA 79 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+ K+HPHGD A+YDT+ RMAQ FSLRY+L+DG GNFGSIDGD AA RYTE RL Sbjct: 80 RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARL 139 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +K+A EL+ D++K+TVDFV NYDG E+ P V+P PNLL NGSSGIAVGM+T+IP HNL Sbjct: 140 SKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNL 199 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 +E+I G + ID+ D +I L+ I GPDFPT A I +GIE + TG+G V IR++ Sbjct: 200 SELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVS 259 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E R ++V EIPY VNK LIEKI ELVK + + GI+ +RDES ++G+R+VIEV Sbjct: 260 IEQLPT--RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIRLVIEV 317 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 KRD V EV+LN L+ T+LQV F +NM+AL G PK++N+K + ++ H+ +V+ R+T Sbjct: 318 KRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVLIRKTQ 377 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F L+K ++R HIL L +A NID +I +I+ + A AL Sbjct: 378 FNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER-------------- 423 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + L E QA+A+LD+RL+ L+ LE KL E +EL I Sbjct: 424 --------------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEF 463 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANS-ADINLEDLITQEDVVVTLSHQ 546 ++L +++I+E+L + EQFGD RR+EI DI+ EDLITQE+VV+T+S Sbjct: 464 CQQVLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTN 523 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 GY+K + Y Q RGG G +D I +LLV +TH +L F+ +G+VY ++ +Q Sbjct: 524 GYLKRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQ 583 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P R +G P VNL+ +++DE+I A++ V +++ G F T NGT+K+T L+EF + Sbjct: 584 IPPGFRTNKGIPAVNLIKIDKDEKICALISVNDYQNG-YFFFCTKNGTIKRTSLSEFANI 642 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 + GK AI + D L V TSG+D++ + S G VVRF E +VR + GV GI L Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINL 702 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 + + V L +L+ QNG GK T++ +Y R KGV +++VT + G VV Sbjct: 703 NQCEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTGPVVTT 762 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 V + ++MI+ AG +VR + ++S +NT GV LI+ E E + + + + Sbjct: 763 TTVFGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIK 822 Query: 847 DLDTIDGSAAEGDD 860 + Sbjct: 823 TTTATETDDVGSKQ 836 >UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9RT53_DEIRA Length = 812 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 394/844 (46%), Positives = 562/844 (66%), Gaps = 43/844 (5%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I PV+I E+K+++++YAM+VIV RALPDVRDG+KPV RR++YAM G N + KSA Sbjct: 4 IQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 VVG+V+ +YHPHGDS++YD +VR+ Q +++RY LVD QGNFGS+DGD AAAMRYTE R+ Sbjct: 64 SVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEARM 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 K+A E++ADLEKETVD NYD T P V+P+ +PNLL+NG+SGIAVGMATNIPPHNL Sbjct: 124 TKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 TE+ NG LA ID+ I+++ +M H+ GPDFPT I + GI EAY TG + +R +A Sbjct: 184 TEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI-AKVGIREAYATGHAGLKVRGKAR 242 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRIVIE 306 +E K GR II+ EIPYQ+NK L++ I+ + K ++ I ALRDESD+ + +RIVIE Sbjct: 243 IEE-GKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301 Query: 307 VKRDA--VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +KR A +G +VLN LY TQLQ S+ + +++ +G+P+++ L D + F+ HRR+VVTR Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNGEPRVLPLIDTMRYFLDHRRDVVTR 361 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT+++LRKA++RAH+LE L AL +ID +I LIR + T AEA+ L+A Sbjct: 362 RTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMAR----------- 410 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + L+E QAQAILD+RLQ+L GLE EKL EY EL Sbjct: 411 -----------------------FGLSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKT 447 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I L ILG L I++E+ +R+++GD RR+ IT DIN EDLI ED+V+T++ Sbjct: 448 ITRLESILGDEKLLWREIKKEIRDIRDRYGDARRSVITELEEDINKEDLIAVEDMVITMT 507 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GYVK L+ Y Q+RGG+G S +++EED + V +THD++L F+ +GRV+ K+ Sbjct: 508 RAGYVKRTNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKI 567 Query: 605 YQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 Y LPEA R A+G I NLLP L DE I ++L V+ F++ AT +G +KK+++T++ Sbjct: 568 YDLPEAGRDAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGSFIFATKSGVIKKSLITDY 627 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + +AG +AI L GDELIGVD+ D+V+L + G+ +RF+ + VR G T GV G Sbjct: 628 ANITSAGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDTGRATQGVIG 687 Query: 724 IRLGEGDKVVSLIVPRGDGA---ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 IRL EGD+VVS+ + G+ +L ++ G GKRT V++YP+K R GVI++ VT++ Sbjct: 688 IRLREGDEVVSMALVPGNDEEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKT 747 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G +V V +++M++T+ GT++RTRV E+ + GRN QGV +I + + V+ + Sbjct: 748 GKLVTLAHVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIR 807 Query: 841 EPVD 844 + + Sbjct: 808 KEDE 811 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 18/237 (7%) Query: 646 VFMATANGTVKKTVLTEF--NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 V T G VK+T LT + + G KL + D GV + S D ++ F+ +G+V Sbjct: 503 VITMTRAGYVKRTNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRV 562 Query: 704 VRFKESSVRAMGCNTTGVRGIRL----GEGDKVVSLIVPRGDGA---ILTATQNGYGKRT 756 K + G + G L + + + S++ G + AT++G K++ Sbjct: 563 FHEKIYDLPEAGRDAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGSFIFATKSGVIKKS 622 Query: 757 AVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVG 816 + +Y + + G+I+I + ++G D D +++ T G +R + + G Sbjct: 623 LITDYANIT--SAGLIAINLQP-GDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDTG 679 Query: 817 RNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPE 873 R TQGVI IR E + VV + V +E +L I + V D P Sbjct: 680 RATQGVIGIRLREGDEVVSMALVPGNDEEGELLAISECG------LGKRTKVSDYPS 730 >UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNA3_9BACT Length = 814 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 370/846 (43%), Positives = 529/846 (62%), Gaps = 39/846 (4%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 L +I + EE+K SYLDYAMSVIVGRALPD RDGLKPV RR+L+AM LG N+ Sbjct: 4 QTLFGKIIRHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQ 63 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +YKKSARVVG+ +GKYHPHGDSA+YDT+VR+AQ FS+RY LVDGQGNFGSIDGDSAAAMR Sbjct: 64 SYKKSARVVGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMR 123 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL ++ ++ D++++TV++ N+D + K P V+P+++PNLLVNGS+GIAVGMATN Sbjct: 124 YTEARLQELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATN 183 Query: 182 IPPHNLTEVINGCLAYID-DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +PPHNL EV++ I+ + LM +PGPDFPT +I G+ GI +AYRTGRG++ Sbjct: 184 MPPHNLGEVVDAICYLIEAGDQADFGELMARMPGPDFPTGGVILGKDGIIDAYRTGRGRL 243 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 ++ VE K G+ +++ EIPY VNK +IE IA V+ K ++G++ +RDESD+ G Sbjct: 244 VVQGLVHVEE-GKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKG 302 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V+EV RD ++V+ LY ++QLQ +FG+ +AL G+P ++L D++ F+ HRR Sbjct: 303 LRVVLEVSRDVDPDLVIRQLYRRSQLQNTFGVINLALVDGRPVELSLTDMLNVFLGHRRT 362 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV RRT F L+KA RAHILE L AL ID +I LIR + A AK LVA Sbjct: 363 VVRRRTEFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAE------- 415 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 +E QAQAILD++LQ+LTGLE +KL DE+ Sbjct: 416 ---------------------------LDFSEIQAQAILDMKLQRLTGLERDKLNDEFAG 448 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS-ADINLEDLITQEDV 539 LL I IL S L VI EEL ++ ++GD RRT+I D + EDLI +ED+ Sbjct: 449 LLADIQRYRSILDSEKVLDGVIVEELVALKGKYGDDRRTKIVDRVGQDCSDEDLIPREDI 508 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 VV LS GY++ PL +Y Q +GGKG+ AR++EED + + V+ THD I F+++GRV Sbjct: 509 VVMLSRDGYLRRVPLEDYSLQAKGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRV 568 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 +++K Y + E +R +G+ I + LE DER+ ++ +E +F T G K+ Sbjct: 569 FAIKGYIISE-SRTGKGKLIGKYISLENDERVVSM-KTRRGQESGFLFFLTRRGIAKRLP 626 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 +E + L AG+ + L +GDE+ + TSG D+++L SA G+ +R E R MG + Sbjct: 627 SSELDNLTRAGRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPMGRSAR 686 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 GV+ +RL +GD+++S V D + ++ G GKRT ++ R G+ + + R Sbjct: 687 GVKAMRLKDGDRIISGEVVTEDRRPILVSETGIGKRTNFEDFTVHHRGGGGMKVMSINSR 746 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 GL+ A V + D+I+++T G ++R EI ++GR G I++R ++VV L V Sbjct: 747 TGLLAAATSVSEDDEIIVMTAKGRMIRVAAKEIRVLGRTAAGSIVVRLDGGDSVVDLSVV 806 Query: 840 AEPVDE 845 ++ Sbjct: 807 NMDGED 812 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 99/252 (39%), Gaps = 11/252 (4%) Query: 497 RLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSE 556 + I E + + K + + + L+ +G K P SE Sbjct: 570 AIKGYIISESRTGKGKLIGKYISLENDERVVSMKTRRGQESGFLFFLTRRGIAKRLPSSE 629 Query: 557 YEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 616 + R G+ + E D I ++L + D +L S+ G+ + + R ARG Sbjct: 630 LDNLTRA--GRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPMGRSARG 687 Query: 617 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG--KVAI 674 V + L+ +RI + VTE + + + G K+T +F G + Sbjct: 688 ---VKAMRLKDGDRIISGEVVTE---DRRPILVSETGIGKRTNFEDFTVHHRGGGGMKVM 741 Query: 675 KLVDGDELIGVDL-TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVV 733 + L+ S +DE+++ +A+G+++R +R +G G +RL GD VV Sbjct: 742 SINSRTGLLAAATSVSEDDEIIVMTAKGRMIRVAAKEIRVLGRTAAGSIVVRLDGGDSVV 801 Query: 734 SLIVPRGDGAIL 745 L V DG L Sbjct: 802 DLSVVNMDGEDL 813 >UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=GYRA_FIBSS Length = 903 Score = 885 bits (2287), Expect = 0.0, Method: Composition-based stats. Identities = 394/900 (43%), Positives = 551/900 (61%), Gaps = 90/900 (10%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E++++ YL Y+MSVIV RALPD RDG KPVHRRV+Y+M+ LG NK KSAR+VGD Sbjct: 15 VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 VIGKYHPHGD AVYDT+ RMAQ FSLRY LV GQGNFGSIDGDS AAMRYTE ++ + Sbjct: 75 VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 134 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 ++ DLEKETVD NYD + + P V+P+ +PN++VNG+SGIAVGMATN+ PHNL EV Sbjct: 135 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 194 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDA 252 A ++ D++ E LME++ GPDFPT AI+ GR GI EAY TG G+V +RAR E+E DA Sbjct: 195 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 254 Query: 253 KTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAV 312 K G+ IIV EIPY VNKA L +KIA+LV++KR++GI+ +RDES +D +RIVIE++RDAV Sbjct: 255 K-GKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD-IRIVIELRRDAV 312 Query: 313 GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK 372 GEVVLNNL+ TQLQ +F I +AL + PK++ LKD++ ++ HR +V+TR T F+L+K Sbjct: 313 GEVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKK 372 Query: 373 ARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAA 432 A R HI+E L +A NID ++++IR + T AK +L Sbjct: 373 AAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR------------------- 413 Query: 433 RPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 492 + L E Q+QAI+D+RL +L GL EKL EY EL+ +A+L IL Sbjct: 414 ---------------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDIL 458 Query: 493 GSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQ 552 +R + ++ ++L+ V +++GD+RRT I D + EDLI +E+ V+TLS +GY++ Sbjct: 459 EKRERRVAIMLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRL 518 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 P+ ++AQ RGGKG A +K+ED ++++ A+TH ++L F+++GRVY KVY+LPE R Sbjct: 519 PIDTFKAQNRGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGAR 578 Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 +GRPIVN + L + E++ AI+PV +F + AT G + K LT F+R R AG Sbjct: 579 NGKGRPIVNFVALTEGEKVQAIVPVRKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVN 638 Query: 673 AIKLVDGDELIGVDLTS------------------------------------------- 689 AI L + DEL+ V L Sbjct: 639 AISLDEDDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDA 698 Query: 690 --------GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 +D +M+ + G+ V F S RAMG T GV+GI L EGD+V+SL+ + Sbjct: 699 EDFANRPIPKDLLMIATKNGQAVTFPISCFRAMGRGTHGVKGITLAEGDEVISLLWLKAG 758 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 ILT T+ GYGKR+ Y R +KGV ++ VT++ G V V D +++ + Sbjct: 759 NKILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKD 818 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDE 861 G ++R + ++I + GRN QGV I + + V + ED++ A E D+ Sbjct: 819 GQVIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSV---EDIEQDSADAKETFDK 875 >UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C0R046_BRAHW Length = 834 Score = 885 bits (2287), Expect = 0.0, Method: Composition-based stats. Identities = 365/849 (42%), Positives = 535/849 (63%), Gaps = 38/849 (4%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 D+ + + ++IE EL+ SYL YAMSVIV RALPDVRDGLKPVHRR+LYAM +K Sbjct: 21 KDILKRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDK 80 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 YKKSA VG+V+ +YHPHGD+AVY T+VRMAQ FS+RY+LVDGQGNFGSID D AAMR Sbjct: 81 PYKKSAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMR 140 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE R+ + A E++ D+EKETV FV N+D + P V+P +P LLVNGS GIA+GMATN Sbjct: 141 YTEARMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATN 200 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 +PPHNL EV+N + YID +D I+ LM ++ GPDFPTA II G+ GI+EAY TG+G++ Sbjct: 201 MPPHNLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIYGKEGIKEAYTTGKGRIK 260 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDG 300 +RAR EVE K RE I+V E+PY V K L EKIA+LVK+ ++EG++ +RDE S++ G Sbjct: 261 LRARLEVEE-TKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAG 319 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R++IE+K+ ++VLN L+ T L+ +FGI +AL +G+PK++NLK++I FV HR E Sbjct: 320 IRLIIELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVE 379 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+T+RT ++L +A+ +AHILE L +A ANI+ +I +IR + A+T L+ Sbjct: 380 VITKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------- 432 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + L+E+QAQAILD+ L++LT LE K+ E ++ Sbjct: 433 ---------------------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQ 465 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQED 538 L + IA +L ++++ VI++EL+ + E++GD RR+EI N +I+ EDLI ED Sbjct: 466 LREFIAYCEDLLAHPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTEIDEEDLIHDED 525 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V V+++ QG++K P S Y Q RGG G + + E +I+ L VA+T D++ F+ RG+ Sbjct: 526 VAVSITTQGFIKRVPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGK 585 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + MKV+++P ++ ++G+ I +L L +E+IT+ V+EF+ + M T GT+KK Sbjct: 586 AFWMKVHEIPALSKISQGKSIKFILNLAPEEKITSYFTVSEFDPKQSIIMVTKMGTIKKM 645 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 L + G +A+ L + DEL+ V D+ ++ +A G +R E +R MG Sbjct: 646 ELKHLENAKKRGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKMGRAA 705 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GV+GI L + D VS +++ T+NG GKR + ++ K R KG I IK Sbjct: 706 AGVKGISLDDDDICVSGNAIHKGESLIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDN 765 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + G VV V D D+IM++T ++ + I +GRN +GV ++ ++ V L Sbjct: 766 KTGNVVSVKTVGDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAV 825 Query: 839 VAEPVDEED 847 V +E+ Sbjct: 826 VPADNEEKK 834 >UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondrial n=14 Tax=cellular organisms RepID=GYRA_NICBE Length = 935 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 364/886 (41%), Positives = 527/886 (59%), Gaps = 67/886 (7%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 + + + +E +Y+ YAMSV++GRALPDVRDGLKPVHRR+LYAM+ LG K Sbjct: 85 NGGERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKP 144 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 YKK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLR L+ G GNFGSID D AAMRY Sbjct: 145 YKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPPAAMRY 204 Query: 123 TEIRLAKIAHELM-ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 TE RL + ++ ADLE+ TVDFV N+D ++K P ++P ++PNLL+NG+SGIAVGMATN Sbjct: 205 TECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATN 264 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL E+++ A I + + +++ L+E++PGPDFPT II G GI EA+RTGRG+V Sbjct: 265 IPPHNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAFRTGRGRVV 324 Query: 242 IRARAEVEV-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IR + ++E+ D+KT R II+ EIPYQ NKA L+EKIA+LV+ K +EG+S +RDESD+ G Sbjct: 325 IRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSG 384 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+KR + +VLNNLY T LQ SF NMV + +GQPK+M LK+++ AF+ R Sbjct: 385 MRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQAFLDFRCS 444 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV RR F+L +A++R HI+E + V L N+D +I IR Sbjct: 445 VVERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRK--------------------- 483 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + L+E+QA+AILD+ L++LT LE K ++E K Sbjct: 484 -------------ASSNALAAASLRKEFELSEKQAEAILDISLRRLTALERNKFVEEGKS 530 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA-NSADINLEDLITQEDV 539 L QI++L +L S +++++I EE ++ +F + RR+ + +S D+ D+I E++ Sbjct: 531 LRTQISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEM 590 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 ++ +S +GYVK + Q RG GKS +++ D + LV HD +L FS +G V Sbjct: 591 LLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTV 650 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 YS Y++PE +R A G P+V +L L ERIT+I+PV+EF + M T NG +KK Sbjct: 651 YSSPAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFAADQYLVMLTVNGYIKKVS 710 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L F +R G +AI+LV DEL V S D V + S G V+ +++RA+G NT Sbjct: 711 LNYFASIRCTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRALGRNTR 770 Query: 720 GVRGIRLGEGDKVVSLIVPRG---------------------DGAILTATQNGYGKRTAV 758 G +RL EGDKV S+ + +L +++GYGKR V Sbjct: 771 GSVAMRLKEGDKVASMDIIPDALQKELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPV 830 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAVQV--------DDCDQIMMITDAGTLVRTRVS 810 + + T G+ K + + V + +Q+++++ +GT+ R +V Sbjct: 831 SRFRTSPLNRVGLFGYKFSSE-DCLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVR 889 Query: 811 EISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 +ISI R +GVIL+R + ++ + + + AA Sbjct: 890 DISIQSRYARGVILMRLEHAGKIQSASLISAADADPEDEDATAVAA 935 >UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacteria RepID=D0SBV6_ACIJO Length = 993 Score = 882 bits (2280), Expect = 0.0, Method: Composition-based stats. Identities = 518/980 (52%), Positives = 662/980 (67%), Gaps = 116/980 (11%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 EI P+ IE+ELK+SYLDYAMSVIV RALPDVRDGLKPVHRRVLYAM+ LGND+NKAYKK Sbjct: 4 SEIRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVGDVIGKYHPHGDSAVY+TIVRMAQ FSLRY LVDGQGNFGS+DGDSAAAMRYTE+ Sbjct: 64 SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R+ K+ HE++ADLEK+TVD+ DNYDG+E+IP VMPT+IPNLL+NG++GIAVGMATN+ PH Sbjct: 124 RMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 N+TEV+N CLAY ++ +ISIEGLME+I GPDFPT II G+ GI +AYRTG+G+++IR + Sbjct: 184 NMTEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIYGKAGIVDAYRTGKGRLHIRGK 243 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E D KTGR TI+ EIPYQVNKA+ IE+IAELVKEK++EGIS LRDESDKDGMRI I Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 ++KR EVV+NNL+ TQL+ SF INMV L +GQPK+MNLKDI+AAF+RHR+EVVTRR Sbjct: 304 DLKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIVAAFIRHRQEVVTRR 363 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T+FELRKAR+R HILE L VALANID IIE I+ + PAEA+ L A W GNV A+LE Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLE 423 Query: 426 RAGDDAARPEWLEPE-----FGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 +AG + RP+ +E E FG+ +Y L+ Q AIL+LRL +LTGLE +KL EY E Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTE 483 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 +L QIAEL IL + LM VI+EEL L+ +Q+GD RRT I + D + EDLI +E VV Sbjct: 484 ILGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESRIDFSREDLIPEEQVV 543 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 +T+S GY K QPLS+Y AQRRGG+GKSA +KE+D+I L+V + H +LCF++ G+VY Sbjct: 544 LTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGKVY 603 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++V+++P+A+RG++GRP+VNLLPL+ DE ITAILPV + + K +A V+ V Sbjct: 604 RLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKKFKERLAEFKNFVRSNVA 663 Query: 661 T-EFNRLRTAGKVAIK-----LVDG-DEL----------IGVDLTSGEDE---------- 693 T N + A A+K L + DEL +GV+L++ + + Sbjct: 664 TLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNETVVEFADL 723 Query: 694 ---------VMLFSAEGKVVRFKESSV--------------------------------- 711 V + +A G V R + Sbjct: 724 AEKMRKNFFVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVAITDGEQQIML 783 Query: 712 ---------------RAMGCNTTGVRGIRL------GEGD-------------------K 731 R MG GVRG+R+ E D + Sbjct: 784 FSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVASR 843 Query: 732 VVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD 791 +VSL+V G +L A+ NGYGKRT V ++PTK R KGVI+IK +ERNG +VGAV +D+ Sbjct: 844 IVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDE 903 Query: 792 CDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTI 851 ++M+I+D GTLVRTR SE++ GRN QGV LIR +E +VG+ V E+D+ + Sbjct: 904 SKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEEILVGVVAVEAVEVEDDI--L 961 Query: 852 DGSAAEGDDEIAPEVDVDDE 871 D S ++ + EV+VD Sbjct: 962 DASIETTEETVVDEVNVDAS 981 >UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1UZ45_PELUB Length = 849 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 378/854 (44%), Positives = 560/854 (65%), Gaps = 27/854 (3%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + I +++ +E+ SSYL YAMSVIV RALPDVRDGLKPVHRR+L+AM G DW+K ++ Sbjct: 9 DKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFR 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDVIGKYHPHGD +VYD +VRM Q FS+ LV GQGNFGSIDGD AAAMRYTE Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLAK++ L+ D+EK+T+++ NYD TEK P V+P + PNLLVNG+ GIAVGMAT+IPP Sbjct: 129 TRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPP 188 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+I+G LA I+++DI I+ LM+HIPGPDFPT +I G+ I+ Y GRG IR Sbjct: 189 HNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAGYNVGRGSFKIRG 248 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 VE K GRE +++ +PYQVNK+ L E+IA+LV+EK++EGI +RDES+++G+R+ Sbjct: 249 EISVEA-QKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 I+++ E + LY T ++ SFG N +A+ G+PKI +LK+ + F+ R +VV + Sbjct: 308 IDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICDLKEFLTNFLTFREDVVIK 367 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 +T F+L+KA DRAHIL L+V++ N+D II++IR + TP +AK +L+ W++ ++ Sbjct: 368 KTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKLI 427 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 D + LY L++ Q AIL+LRLQKLT L ++ E K+L D Sbjct: 428 SLVEDKKEK------------NLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADL 475 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I +I+ S L+ VI EEL+ ++E+F RRT+I + ++E+ I +E V++T++ Sbjct: 476 IKGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVIITVT 535 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 QGY+K LS + Q+RGGKGKS ++ED + + L NTH +L FS+ G VY +K Sbjct: 536 LQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKA 595 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLT 661 +++PE + ++G+ + N+LPL+ + I++I+P + E K + ATA G V+K L Sbjct: 596 WKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLE 655 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCNTTG 720 +F+ + +AGK+AIKL D+++GV++ + +VML + GK +RF+ +R G ++ G Sbjct: 656 DFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKG 715 Query: 721 VRGIRLGEGDKVVSLIVPR----------GDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 ++GI L D++VSL + +L+ T+NGYGK+T EY +R KG Sbjct: 716 IKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVTNRGGKG 775 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 +I I + RNG + + V + D +M+ T+ G ++R V EI GRNTQGV +I+ + D Sbjct: 776 IIGIVNSPRNGSICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGD 835 Query: 831 ENVVGLQRVAEPVD 844 E VV ++ + ++ Sbjct: 836 EKVVSAIKIDDNLE 849 Score = 95.8 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 95/248 (38%), Gaps = 19/248 (7%) Query: 619 IVNLLPLEQDERITAILPVTEFEE----GVKVFMATANGTVKKTVLTEFNRLRT--AGKV 672 I + + +I + + EE + T G +K+ L+ + + GK Sbjct: 500 IKEKFAVPRRTKIIDAILNYDIEETIQKESVIITVTLQGYIKRGALSSVKQQKRGGKGKS 559 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR---LGEG 729 I D D ++ + V+ FS EG V + K + + G L Sbjct: 560 GITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTTSKGKSLFNILPLKNH 619 Query: 730 DKVVSLIVPRGDG------AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 + S++ + I+ AT G ++ ++ ++ + + A K + N + Sbjct: 620 QSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGK---IAIKLDPNDKI 676 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISI-VGRNTQGVILIRTAEDENVVGLQRVAEP 842 VG D +M+ T G +R ++ I GR+++G+ I + ++ +V L + Sbjct: 677 VGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDEIVSLSITNKE 736 Query: 843 VDEEDLDT 850 ++D + Sbjct: 737 KIKKDTKS 744 >UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y742_9BACT Length = 871 Score = 880 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 375/873 (42%), Positives = 532/873 (60%), Gaps = 48/873 (5%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + P + E+K SYLDYAMSVIVGRALPD RDGLKPV RRVLY M LG N+AYKKS Sbjct: 8 RVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKS 67 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVG+V+GKYHPHGD+++YDT+VR+AQP++LRY LVDGQGNFGS+DGD AAAMRYTE R Sbjct: 68 ARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAMRYTEAR 127 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A++ ++ D++++TVD+ N+D + K P +P+ +PNLLVNGS+GIAVGMATN+PPHN Sbjct: 128 FAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHN 187 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+ ID + + LM ++PGPDFPT II GR GI +AYRTGRGK+ +R R Sbjct: 188 LGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIMGREGIVDAYRTGRGKIIVRGRC 247 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 VE + R ++++ EIPY VNK LIE IA+ V+E ++G+S LRDESD+ G+RIV++ Sbjct: 248 VVEEGKR--RTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGLRIVLD 305 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 + RD E+V LY++T +Q +FG+ + L +P + LK ++ F+ +RR+VV RRT Sbjct: 306 LNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVELGLKSMLEVFLDYRRDVVRRRT 365 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 F L KA++R HI+E L AL ID +I +IR A T EA L Sbjct: 366 AFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQ------------- 412 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 +E+QAQAILD+RLQ+LTGLE +KL E +LL IA Sbjct: 413 ---------------------LQFSEKQAQAILDMRLQRLTGLERDKLTAEMAQLLADIA 451 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDVVVTLS 544 IL A L VIR+EL +R +FGDKRRTEI + + EDL+ +E++V+TLS Sbjct: 452 RYQEILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTSDSYEDLMPEENIVITLS 511 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GY++ L +Y Q RGGKG+ A + EED + ++V TH+ +L F+SRGRV+++K Sbjct: 512 KDGYLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKG 571 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG-VKVFMATANGTVKKTVLTEF 663 + +PE +GR + + L + E + IL F + V + T G K+ +E Sbjct: 572 HMVPETK-SGKGRKVEQFISLSEGETVVEIL--GRFPDNCSTVVLITRRGIAKRMDKSEL 628 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 L AG+ + L DGD++ + T+G D++ L SA G+ +R E +R MG + GV+ Sbjct: 629 QNLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTMGRSARGVKA 688 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 ++LG+ D+++S V GD IL +Q G GK T+ E+ RAT G ++++ +R G + Sbjct: 689 MKLGKDDEIISCEVIAGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDRTGRL 748 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 A V D++ ++T G ++R V I +GR+ G ILIR + V + + + Sbjct: 749 AVANTVFPDDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKED 808 Query: 844 DEEDLDTIDGSAAEGDDEIAPEVDVDDE-PEEE 875 G + + AP+ V+ P E Sbjct: 809 -----LVQSGGLRAVEPKPAPQRPVEPTLPFGE 836 >UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepID=Q2GCH4_NEOSM Length = 869 Score = 875 bits (2262), Expect = 0.0, Method: Composition-based stats. Identities = 393/877 (44%), Positives = 556/877 (63%), Gaps = 43/877 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I PVN+E+ELKSSYL YAMSVI+ RA+PDVRDGLKPVHRR+LY+MN L WNK Y+K Sbjct: 2 STIIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRK 61 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARV+G+VIGKYHPHGDSA+YD +VRMAQ FSL L+DGQGNFGSIDGD AAAMRYTE+ Sbjct: 62 SARVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEV 121 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL I+ L+ DL + +VDF NYD +E P V+P K PN+LVNG++G+AVGMATN+P H Sbjct: 122 RLEYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTH 181 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL+EVI C Y+++ +++ + L++ I GPDFPT +I G GI+ ++ +GRG + IR++ Sbjct: 182 NLSEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSK 241 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E + IIV E+PYQVNKA+LIE IA LVKEKR++ IS LRDES+K+G+R+VI Sbjct: 242 THFEETEAG--KAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVI 299 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+KR A EVVLN L+ TQLQ S+ NMV L + +P +M+L+DI+AAF+ HR+EV++RR Sbjct: 300 ELKRGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRR 359 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T F L KAR++A++L AL VA+ NID ++ +++ + A AL A W Sbjct: 360 TEFRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHW---------- 409 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 ++ + + Y L+ Q++AIL++++Q++T E +L+ E +D + Sbjct: 410 AIDEELELLVETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIV 469 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI-NLEDLITQEDVVVTLS 544 E ILGS L VI EL ++ ++ R++ I N + EDLI +E VVVT + Sbjct: 470 KECASILGSEAVLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTAT 529 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 + GY+K +S Y QRRGGKG+ A IK ED + ++ V +THD IL FSSRG+VY +K Sbjct: 530 YSGYIKRVHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKA 589 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y+LP +RGR +VN+ L DE IT+ILP+ + + TA G VK+ +++F Sbjct: 590 YKLPIGEPQSRGRALVNIFDLADDESITSILPLKS-SDAENLIFLTAQGKVKRNSMSDFA 648 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 + GKVAI+L D D LI V ED V + + +GK +RF +R + ++ GV+ Sbjct: 649 YVPANGKVAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKA 708 Query: 724 IRLGEGDKVVSLIVPR---------------------------GDGAILTATQNGYGKRT 756 I LG+ D +SL + + +LT T+NGYGK T Sbjct: 709 ITLGKDDNAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKIT 768 Query: 757 AVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVG 816 + EY +R G+I+I +ERNG VV + +V + IM++T+ G ++R + I ++G Sbjct: 769 SSYEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVTNRGQVIRIEANNIPVLG 828 Query: 817 RNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDG 853 RNTQGV L +E V + V E V+++D +T + Sbjct: 829 RNTQGVRLFSIRAEERVASVTEV-EEVEDDDSETTEN 864 >UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6BPL3_9RICK Length = 859 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 371/862 (43%), Positives = 559/862 (64%), Gaps = 37/862 (4%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I +++ +E+ SSYL YAMSVIV RALPD+RDGLKPVHRR+LYAM G DW+K ++ Sbjct: 9 DNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQFR 68 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDVIGKYHPHGD +VYD +VRM Q FS+ LV GQGNFGSIDGD AAAMRYTE Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL+K++ L+ D+EK T+ F NYD TEK P V+P + PNLLVNG+ GIAVGMAT+IPP Sbjct: 129 TRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIPP 188 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+ING LA ID++DI I LM+++PGPDFPT +I G+ I+ Y GRG IR Sbjct: 189 HNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVIIGKDIIKHGYNNGRGSFKIRG 248 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 VE K GRE +++ IPYQVNK+ L E+IA+LV+EK++EGI +RDES+++G+R+ Sbjct: 249 EVSVE-SLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 I+++ E + LY TQ++ SFG N +A+ G+PK LKD ++ F+ R ++V + Sbjct: 308 IDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDFLSNFLSFREDIVIK 367 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 +T F+L+KA +RAHIL L+V++ N+D II++IR + TP +AK A++ W++ ++ Sbjct: 368 KTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQKLI 427 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + GLY L+E Q AIL+LRLQKLT L ++ E K+L + Sbjct: 428 SLVEGKKGK------------GLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAEL 475 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 IA +I+ S L++VI EEL+ ++E+F RRT+I + ++E+ I ++ V++T++ Sbjct: 476 IARYKKIISSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVIITVT 535 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 QGY+K L + Q+RGGKGKS +++D + + L NTH +L FS+ G VY +K Sbjct: 536 LQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKA 595 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLT 661 +++PE + ++G+ + N+LPL+ + I++I+P+ E E +K + ATA G V+K L Sbjct: 596 WKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLE 655 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCNTTG 720 +F+ + +GK+A+KL + D+++GV + + +++L + GK +RF+ +R G ++ G Sbjct: 656 DFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKGRSSKG 715 Query: 721 VRGIRLGEGDKVVSLIVPRG--------------------DGAILTATQNGYGKRTAVAE 760 ++GI L D++VSL V + +L+ ++NGYGK+T+ + Sbjct: 716 IKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFVLSISENGYGKKTSHID 775 Query: 761 YPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQ 820 Y +R KG+I I + RNG + + V + D+I++ T+ G ++R V EI GRNTQ Sbjct: 776 YRVTNRGGKGIIGIVNSPRNGNITSSFPVFEGDEILISTNKGRVIRVAVKEIRTAGRNTQ 835 Query: 821 GVILIRTAEDENVVGLQRVAEP 842 GV +I+ + +E VV ++ + Sbjct: 836 GVRIIKLSGEEKVVSAIKIDDN 857 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 79/522 (15%), Positives = 176/522 (33%), Gaps = 51/522 (9%) Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R +V +++ K+ I + + I+ IR + A+ Sbjct: 259 RERLVITSIPYQVNKSVLNERIAQ---LVREKKIEGIKDIRDESNREGIRVAIDLRNGVE 315 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 V+ T + L + ++ + Sbjct: 316 PETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDF-------LSNFLSFREDIVIKK 368 Query: 478 YKELLDQIAELLRIL-------GSADRLMEVIRE-ELELVREQFGDKRRTEITANSADIN 529 K L + E IL + D+++++IR + +Q K + +I + I+ Sbjct: 369 TKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQKLIS 428 Query: 530 LEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHD 588 L + + + +LS + L + G K E + ++ Sbjct: 429 LVE-GKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKIISSKK 487 Query: 589 HILCFSSRGRVYSMKVYQLPEATRGARGRPIVN-LLPLEQDERITAILPVTEFEEGVKVF 647 +L +V S ++ + E R I++ +L + +E I ++ + Sbjct: 488 ELL------KVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETI---------QKQSVII 532 Query: 648 MATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 T G +K+ L + + GK I D D ++ + V+ FS EG V + Sbjct: 533 TVTLQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYK 592 Query: 706 FKESSVRAMGCNTTGVRGIR---LGEGDKVVSLIVPRGDG------AILTATQNGYGKRT 756 K + ++ G L + S++ + I+ AT G ++ Sbjct: 593 VKAWKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKN 652 Query: 757 AVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI-V 815 ++ ++ + + + K + N +VG D I++ T G +R ++ + Sbjct: 653 SLEDFSSINASGK---IAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFK 709 Query: 816 GRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE 857 GR+++G+ I A ++ +V L + +++ +E Sbjct: 710 GRSSKGIKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSE 751 >UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepID=GYRA_THEMA Length = 804 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 360/843 (42%), Positives = 536/843 (63%), Gaps = 44/843 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + +E+EL SYL Y+MSVIVGRA+PDVRDGLKPV RR+LY M LG N Sbjct: 1 MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VG+V+GKYHPHGD+ VYD +VRMAQPF++RY L++GQGNFGSID D AAMRYT Sbjct: 61 KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL ++A E++ D+EK TV+ +DN+DGT K P+V+P+K+PNL++NG+SGIAVGMATNIP Sbjct: 121 EARLTRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL+E ++ + ID + ++E LM+ I GPDFPT A++ +++ Y GRG++ +R Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVR 240 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + VE + + I++ EIPY V+KA LIE+IA++ K+ I +RDESDK GMRI Sbjct: 241 GKVHVEDGKRV--KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVV 362 VIE+ +DA EV++NNLY +T LQ F + M+ + H +P++MNLK ++ AF+ HR EV+ Sbjct: 299 VIEIPKDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RR +E + RAH++E L A I +++++R++ A+ +L+ Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME---------- 408 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 +TE+QA+AILD+RL +LT LE E L +EY +L+ Sbjct: 409 ------------------------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLV 444 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 +I+E+ IL +++ E++++E +++Q+GD RRTE+T S + N E+LI +EDVV+T Sbjct: 445 RKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVIT 504 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 LSH+GY+K PL+ Y +Q+RGGKG + +++ E+D ++ ++VA L ++ GR Y + Sbjct: 505 LSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVL 564 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 K YQL R RGR I L LE E+I A+ + EG + +AT +G +K+T L E Sbjct: 565 KNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG--EGRDLVIATKSGKIKRTALKE 622 Query: 663 FNRLRTA-GKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRAMGCNTTG 720 F + G AIK+ GDE++ + + E E +++ + G +RF S VR MG N G Sbjct: 623 FENATSNRGVRAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAG 682 Query: 721 VRGIRLGEGDKVVSLIVPRG--DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 V+ I+L GD+VVS+ V +G ILT T+ G+GKRT V Y + R G+ +I Sbjct: 683 VQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVN 742 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + G VV V ++I+++T G ++R VSEI ++GR T+GV LI + + + + Sbjct: 743 KTGYVVAVRYVRGDEEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGD-DTISKVAV 801 Query: 839 VAE 841 V + Sbjct: 802 VKD 804 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 7/219 (3%) Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI--KLVDGDELIGVDLTSGEDEVMLFSA 699 E V + G +K T L + + GK KL + DE+ V + + + Sbjct: 498 EEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITN 557 Query: 700 EGKVVRFKESSVRAMGCNTTGVRG---IRLGEGDKVVSLIVPRGDGAILTA-TQNGYGKR 755 G+ K + G NT G + L + +K+V+L G+G L T++G KR Sbjct: 558 LGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNGEGRDLVIATKSGKIKR 617 Query: 756 TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV 815 TA+ E+ + + +GV +IK+ + +V V + + +++ T G +R VS++ + Sbjct: 618 TALKEFENAT-SNRGVRAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM 676 Query: 816 GRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854 GRN GV I+ + VV + + + E L + Sbjct: 677 GRNAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKG 715 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 10/151 (6%) Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 + I E + +V + ++T + GY K T + Y ++ R KG+ K++E + Sbjct: 486 QSIEYNEEELIV------EEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSE-DD 538 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL---IRTAEDENVVGLQR 838 V V + + IT+ G + ++ GRNT+G + + + E +V L Sbjct: 539 EVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALAS 598 Query: 839 VAEPVDEEDLDTIDGSAAEGDDEIAPEVDVD 869 + + + T G + + Sbjct: 599 LNGEGRDLVIATKSGKIKRTALKEFENATSN 629 >UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M119_ACIFD Length = 816 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 352/841 (41%), Positives = 496/841 (58%), Gaps = 36/841 (4%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + ++EE++ S+L+Y++SVI+ RALPD RDGLKPVHRR+LY+M G ++ + K Sbjct: 10 SNVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHVK 69 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSID-GDSAAAMRYTE 124 A+VVGDV+ ++HPHGD+A+YD +VRMAQ FSL + L+DG GNFGS D AA RYTE Sbjct: 70 CAKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYTE 129 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLA IA EL+A ++++TVDFV NYD P V+P + PNLLVNGS GIAVGMAT IP Sbjct: 130 CRLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIPS 189 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EV++ ID + +++ LM +PGPDFPT II GR GI +AYRTGRG V +RA Sbjct: 190 HNLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIILGRDGIRDAYRTGRGSVKLRA 249 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 A +E I+V EIP+Q + + +KI LV+EK +EGI +++ S R V Sbjct: 250 VATIEE--ARSGYQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFSAGSETRFV 307 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KRDA VVLNNLY T LQ SF I M+AL G P+ +NL + +V H+REV+ R Sbjct: 308 IELKRDANPNVVLNNLYRLTPLQTSFPIQMLALVDGAPRTLNLLGLCQIYVDHQREVIRR 367 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R+ F L KAR+R HI+E L + +D +I I Sbjct: 368 RSEFRLGKARERLHIVEGLLSCIDQLDAVIATI--------------------------- 400 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 A + + + +E QA ILD+ L +LT L E+L +E L Sbjct: 401 ------RASEDRAAARAALMAEPFGFSELQANHILDMTLGRLTRLGREELEEEAATLRAT 454 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 IAEL IL A RL V+++E+ ++ RRT + D EDLI E +VV +S Sbjct: 455 IAELEAILADAQRLSAVVKDEMLAATAEYRQARRTRFEVDPGDFAAEDLIEDEPIVVLIS 514 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GY+K P S ++AQ RGG+G AR+K+ED I ++ ++ +L FSSRGRVY ++ Sbjct: 515 RSGYIKAVPESSFKAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRG 574 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y+LP+ R ARG +VNL+PL DERIT+++ +F E + T NG VK+T + E+ Sbjct: 575 YELPKLERSARGTALVNLVPLADDERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEYA 634 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 R R G +AI + DEL+ V + + E + ++F+ G+V+RF + VR G T GVR I Sbjct: 635 RSRRDGIIAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVRRTGRATAGVRSI 694 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 R +GD +V+ + +L T GYGKRT + +P R G+ I +TER G +V Sbjct: 695 RRADGDWIVAGGLIEDGVEVLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERKGELV 754 Query: 785 GAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 A V D++++++ G ++R R+ +IS GR GV LI +E+V + V E Sbjct: 755 AAAFVRPEDEVLIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVPESGT 814 Query: 845 E 845 + Sbjct: 815 D 815 Score = 49.2 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 + GD + + + ++ +++GY K + + + + + + Sbjct: 493 VDPGDF-AAEDLIEDEPIVVLISRSGYIKAVPESSFKAQG-RGGRGVVGARVKDEDEIAH 550 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQG---VILIRTAEDENVVGLQRVAEP 842 + ++++ + G + + R E+ + R+ +G V L+ A+DE + + + Sbjct: 551 VISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGTALVNLVPLADDERITSVMGTKDF 610 Query: 843 VDEEDL 848 ++ DL Sbjct: 611 PEDADL 616 >UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C6CYI7_PAESJ Length = 817 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 338/848 (39%), Positives = 508/848 (59%), Gaps = 48/848 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + P +EE + + Y+ +I RA+PDVRDGLKPV RR+LYAM N +K Y Sbjct: 3 MLEQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPY 62 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VGDV+G YHPHGDS++Y+ +VRMAQP+ + ++L+DG GN+GS+D D AAAMRYT Sbjct: 63 RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYT 122 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ IA E++ D++K TV F DN+D T K P V+P++ PNLLVNG+SGI+ G AT IP Sbjct: 123 EARLSPIAMEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIP 182 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PH+L E I+ C+A + ++++E LM + GPDFPT II G GI EAY TG+G++YIR Sbjct: 183 PHSLRETIDACIAVMARPEMTVEELMGIVKGPDFPTGGIIMGEEGIREAYTTGKGRIYIR 242 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 ++ E+E D + GR+ I + EIPYQV K+RL+ + + EK+VEGIS +RDES ++G+RI Sbjct: 243 SKVEIE-DVRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRI 301 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+E+K++A +L L +T LQV++ NMVA+ + P+ + +K I+ A++ H++EVVT Sbjct: 302 VVELKKEADANGILAYLLKKTDLQVTYNFNMVAIVNKAPQQLGIKQILNAYINHQKEVVT 361 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RT +EL KA +RAH++E L AL +D +I I+ + A+A+ LVA Sbjct: 362 HRTQYELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAK---------- 411 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 Y +E+QA AIL L+L +LT LE L E+KE Sbjct: 412 ------------------------YGFSERQADAILTLQLYRLTNLEITSLEKEWKETQK 447 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 +IA L IL S +L+ VI++EL +RE++G RR+ I + +NLE ++ EDV+V Sbjct: 448 KIAYLRSILESEKKLLGVIKDELTEIREKYGIDRRSSIRGEVEELKVNLEVMVQSEDVIV 507 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 TLS +GY+K + + R G A +KE D I + NT D++L F+ +G+ Y Sbjct: 508 TLSEEGYMKRTSMLSF---TRSGGDLQTAGVKEGDAISSVYEVNTIDNLLLFTRKGQYYM 564 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTVL 660 + V+Q+PE G +VN++P+ +D+ I AI+PV +F G + T VK+T L Sbjct: 565 LPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAIIPVKDFNLPGASLVFVTKRAQVKRTEL 624 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E+ R+ A K+ +GDE+I V L+ G +++L S G +RF E V AMG G Sbjct: 625 KEYMTTRSTAIAAAKVAEGDEVIRVTLSEGTKQLLLVSKLGMSIRFSEQEVNAMGRVAAG 684 Query: 721 VRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE- 778 VRG++L E D++++ V +G +L T GY KRT + +YP + R KGV + + E Sbjct: 685 VRGMQLREDDELIAAEWVADDEGEVLVVTDLGYAKRTLLLDYPLQGRGGKGVQTFEFKEG 744 Query: 779 -----RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 +V A+ + I+ +T G + + I R + G IL+ +++ + Sbjct: 745 KRVKPNGSALVAALYCKEELGIIALTSQGAQLAASSEKAPIEDRKSIGRILLPMEKNDVI 804 Query: 834 VGLQRVAE 841 + E Sbjct: 805 TTIFVRPE 812 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 88/208 (42%), Gaps = 13/208 (6%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAG-KVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVV 704 + + G +K+T + F R+ G + +GD + V + D ++LF+ +G+ Sbjct: 506 IVTLSEEGYMKRTSMLSF--TRSGGDLQTAGVKEGDAISSVYEVNTIDNLLLFTRKGQYY 563 Query: 705 RFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRG----DGAILTATQNGYGKRTA 757 + TG V + + + D +V++I + +++ T+ KRT Sbjct: 564 MLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAIIPVKDFNLPGASLVFVTKRAQVKRTE 623 Query: 758 VAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGR 817 + EY T I+ V+ + Q+++++ G +R E++ +GR Sbjct: 624 LKEYMTTR---STAIAAAKVAEGDEVIRVTLSEGTKQLLLVSKLGMSIRFSEQEVNAMGR 680 Query: 818 NTQGVILIRTAEDENVVGLQRVAEPVDE 845 GV ++ ED+ ++ + VA+ E Sbjct: 681 VAAGVRGMQLREDDELIAAEWVADDEGE 708 >UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVF2_STRM9 Length = 870 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 399/852 (46%), Positives = 563/852 (66%), Gaps = 56/852 (6%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + IE+E+K+SYLDY+MSVIV RALPDVRDGLKPVHRR+LYAM+ L + N YKKSAR+V Sbjct: 43 IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKSARLV 102 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 130 G+V+GKYHPHGDSAVY+++VRMAQ F+ RYMLVDG GNFGSIDGDSAAAMRYTE R++KI Sbjct: 103 GEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDGDSAAAMRYTEARMSKI 162 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ D+ K+T+D+ N+D + P V+P ++PNLL+NG++GIAVGMATNIPPHNL E+ Sbjct: 163 AEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHNLGEL 222 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 +G +A ID+ DISI+ L+ HI GPDFPT II G+ GI AY+TGRGKV + A+ E+ Sbjct: 223 SDGIIALIDNRDISIDELITHIKGPDFPTGGIIYGKSGIYSAYKTGRGKVRVSAKTEIIT 282 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 D K GR++I++ E+PYQVNKA LI++I ELVK+K + GIS L D S+ +G+RIVI++K+ Sbjct: 283 DKK-GRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVIDIKKG 341 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 E+VLN L T LQ +FGI M+AL + PKI+NLK+I+ ++ HR +V+TR+TIF+L Sbjct: 342 EEAEIVLNKLLKFTDLQTTFGIIMLALVNNAPKILNLKEILEKYLEHRYDVITRKTIFDL 401 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 KA+DRAHILE L AL +ID II +IR + T A AK +L+A Sbjct: 402 NKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAK----------------- 444 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 + TE Q AILD+RL +LTGL E++ EY +L+ I +L Sbjct: 445 -----------------FEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLMLFITDLED 487 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 IL +R +I+EE+ +++++GD RRT I + +IN+EDLI EDV+VT++ +GY K Sbjct: 488 ILAKDERKYAIIKEEVLELKQKYGDARRTSIENDRYEINIEDLIKNEDVIVTITKRGYAK 547 Query: 551 YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 L Y+AQ+RGGKG S E+D + L A T D ++ FS +G+VYS+KVY++PE Sbjct: 548 RMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEV 607 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTE-FEEGVKVFMATANGTVKKTVLTEFNRLRTA 669 ++ ARG+ I N++ L+++E+I+ I+PV E + + T NG KKT ++EF + Sbjct: 608 SKQARGKLIGNIIELDENEKISVIIPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRN 667 Query: 670 GKVAIKLVDG-DELIGVDLTSGE--DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 GK+AI D DE+ V +TSG DE+ + + G VRFKE +R+MG GVR I+L Sbjct: 668 GKIAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSMGRTAAGVRAIKL 727 Query: 727 GEGDKVVSLIVPR-----GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER-- 779 D+VVS V + ++L+ T G GK+T ++EY R KGV + + R Sbjct: 728 NSNDEVVSADVIYTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSK 787 Query: 780 ----NGLVVGAVQVDDCDQ------IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 + VV + +D D+ ++ I+ GT++R ++ ++ +VGRN++GV + Sbjct: 788 EESEHHYVVYSTIIDPSDENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKY 847 Query: 830 DENVVGLQRVAE 841 E +V RVA Sbjct: 848 KEYLVSADRVAA 859 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV--DGDELIGVDLTSGEDEVMLFS 698 + + T G K+ L + + GK + D L + D +M+FS Sbjct: 532 KNEDVIVTITKRGYAKRMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFS 591 Query: 699 AEGKVVRFKESSVRAMGCNTTGV---RGIRLGEGDKVVSLIVP----RGDGAILTATQNG 751 +GKV K + + G I L E +K+ +I + ++ T+NG Sbjct: 592 DKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKISVIIPVDEIENDNRDLIFITRNG 651 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811 K+T ++E+ T +R K IS K E VG + D+I + T G VR + + Sbjct: 652 IAKKTKISEFKTINRNGKIAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEED 711 Query: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 I +GR GV I+ ++ VV + + +++ + ++ Sbjct: 712 IRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVDEMSVLSVTS 755 >UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 Tax=Thalassiosira pseudonana RepID=B8BXG7_THAPS Length = 820 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 339/849 (39%), Positives = 502/849 (59%), Gaps = 51/849 (6%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 + YA+S+I+GRALPD RDG+KPVHRR+LYAMN LG + +Y+K ARVVG+V+GKYHPHG Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI-AHELMADLEK 140 D+AVYD +VR+AQPFS L+DG GNFGSID D AAAMRYTE RL +I A L+ D+ Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID- 199 +TV+F+ N+DG+E P V+P K+P LL+NG +GIAVGMATN+PPHNL E+++ C+A Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180 Query: 200 ----DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV----- 250 E+++ L++ IP PDFPT A I G+ G Y TG G V +RA +E Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240 Query: 251 -DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 K+ R IIV E+PYQVNKA L+E+IA LV EK++EGI+ LRDESD+DG+R+VIE+KR Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHG--QPKIMNLKDIIAAFVRHRREVVTRRTI 367 DAV VV NNL +T LQ +F N +AL G P+ L++ + F+ R + + + Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 F+L K +RAHI+ L +AL + D +I ++R+AP A A+ AL+ Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALM---------------- 404 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 + L+ QA A+L L+L +LT L +KL DE K L + Sbjct: 405 --------------STDNPKLGLSSAQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTN 450 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L +L + + + + EE ++++FG R+T+I + D DL+ E V+ ++ G Sbjct: 451 LRNLLTNDAAVRDTMLEEFMAMKKRFGTPRKTKILPDEEDKADIDLVQNERSVIVVTRGG 510 Query: 548 YVKYQPLSEYEAQRRGGKGKSAAR--IKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 Y+K PL +E+Q RG +GK I +++ + N HD +L + G Y ++ Y Sbjct: 511 YIKRMPLKTFESQNRGTRGKRGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAY 570 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 Q+PE R ARG PI ++LP++ D+ IT++LPV+EF + + +AT G +KKT L F + Sbjct: 571 QVPEGGRTARGAPIPSVLPVKSDDVITSVLPVSEFSKNEFIVLATEYGWIKKTPLAAFEK 630 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 L G + L DGD L + + D++++ S G+ RFK + +R + GV+ + Sbjct: 631 LTQRGLIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRPTARTSRGVKSMT 690 Query: 726 LGEGDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT--ERNGL 782 L +GD + + V R + +L T GYGKR E+ T +R GVI+IK + Sbjct: 691 LKKGDTIADMNVLRKEDKFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDR 750 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTA--EDENVVGLQRVA 840 + V++ D+I++IT G +VR +VS+IS GR GV++ + +++ + V Sbjct: 751 ISTMRVVNEDDEILLITSQGVIVRQKVSDISCQGRAATGVLVQKVDVRSGDSISTVSIVP 810 Query: 841 EPVDEEDLD 849 + + D+ Sbjct: 811 KEDADGDVT 819 >UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytoplasma RepID=Q2NJM2_AYWBP Length = 835 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 368/848 (43%), Positives = 550/848 (64%), Gaps = 42/848 (4%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I VN+ EE+K S+L YAMSVIV RALPD++DGLKPV RR+LY+M LG + +YKK+ Sbjct: 21 KIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKA 80 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGDS++Y+ +VRMAQ FS RY LVDG GNFGSIDGD AAAMRYTE++ Sbjct: 81 ARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVK 140 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 +AK+A EL+ +++KET+DFVDNYDGTEK P V+PT +PNLL+NG++GIAVGMAT IP HN Sbjct: 141 MAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHN 200 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EVI+G + YI+++DISI+ LM+HI GPDFPT + G + ++ AY TG+G V ++A++ Sbjct: 201 LGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGLQSLKSAYHTGQGAVILKAKS 260 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 V + G+ +IIV EIPYQV K LIEKIA LVK K VEGI+ LRDES + GM+IVIE Sbjct: 261 HVLEE--RGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKGMKIVIE 318 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +KRDA +++LN LY +QL++SFGINMVAL P++++LK I+ AF R EV+ R+ Sbjct: 319 LKRDANAKIILNKLYKHSQLRISFGINMVALVGKTPQLVSLKQILEAFFNFRIEVINRQK 378 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL+KA R H++ AL L +I+ I+LI+ + EA+ L+ Sbjct: 379 SFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQK------------- 425 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Y E Q++AIL++ LQ+L+ E +KL+ E K L +I Sbjct: 426 ---------------------YNFDEIQSKAILEMSLQRLSNQETQKLITEEKNLTQEIL 464 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEI-TANSADINLEDLITQEDVVVTLSH 545 E I+ S + ++ +EL +++++ D R+T + + EDLI ++ +++T+++ Sbjct: 465 ECKSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLIEKKPIIITITN 524 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 +GY+K + Y+ Q+RGG+G S +I EEDFI+ L + +THD+ L F+++G+VY +K Y Sbjct: 525 KGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGY 584 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFN 664 ++P R ++G +VN LP E+DE +T+ + F++ +F AT G VKKT L E++ Sbjct: 585 EIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQDYLFFATKKGIVKKTPLKEYS 644 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 + G +AI+L + DE++ V T+G ++L S G + F E+ ++++ N+ GV G+ Sbjct: 645 HISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKIKSISRNSMGVIGM 704 Query: 725 RLGEGDKVVSLIVPR---GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 RLG + +V + + IL T+NG+GK T V +Y ++R+ KG +IKV ++ G Sbjct: 705 RLGSDEFLVGAALFDVDSKEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVNDQKG 764 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVA 840 ++ V D +++ +D G +VR + +I + TQG +I+ V + V Sbjct: 765 RLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAVSVAVVK 824 Query: 841 EPVDEEDL 848 + V + D+ Sbjct: 825 KEVLDIDV 832 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 12/224 (5%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFS 698 E+ + T G +K + + + + G +K+ + D + + +TS D + F+ Sbjct: 514 EKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573 Query: 699 AEGKVVRFKESSVRAMGCNTTGVRGIRL---GEGDKVVSLIVPRG----DGAILTATQNG 751 +GKV + K + + G + + + + S + + AT+ G Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQDYLFFATKKG 633 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811 K+T + EY S+ +G+I+I++ + N V+ + I++ ++ G + ++ Sbjct: 634 IVKKTPLKEYSHISK--RGLIAIRL-KENDEVLTVKKTTGIKNIILASNNGNAICFCETK 690 Query: 812 ISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 I + RN+ GVI +R DE +VG E+++ + + Sbjct: 691 IKSISRNSMGVIGMRLGSDEFLVGAALFDVDSKEQNILVMTENG 734 >UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon RepID=D1JED8_9ARCH Length = 843 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 384/865 (44%), Positives = 552/865 (63%), Gaps = 64/865 (7%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + V++E+E+ SY+DYAMSVIVGRALPD RDGLKPVHRR+LY M+ LG N+ +KK Sbjct: 12 ERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPHKK 71 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VGDV+GKYHPHGD AVYDT+VRMAQ FS RY LVDGQGNFGS+DGD+AAAMRYTE Sbjct: 72 SARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDGDAAAAMRYTEA 131 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL+KIA EL+ DLEK+TV++ N+D + K P ++P K+PNLL+NGSSGIAVGMATN+PPH Sbjct: 132 RLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMPPH 191 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NLTEV++G + I++ ++SIE LM+ I PDFPT II G GI+ AY TGRG + IRA+ Sbjct: 192 NLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIGYEGIKRAYETGRGSIRIRAK 251 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 AE+EV K +E I+++EIPYQVNK+RL+E+IAE K+ +VE IS LRDESD+ GMRIVI Sbjct: 252 AEIEVKGK--KERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKGMRIVI 309 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K A ++LN LY TQL+ +FG+ +AL G+P+++ LK++I +++HR+EV RR Sbjct: 310 ELKAGANSAIILNRLYKHTQLENTFGVINLALIDGEPRVLTLKELIECYIKHRKEVTIRR 369 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 +EL +A R HIL+ L +A++NID +I LI+ A AK+AL+A Sbjct: 370 LQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR------------ 417 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E+QA+ ILD+RL +L+ LE +K+ E EL +I Sbjct: 418 ----------------------FELSEEQAKEILDMRLSRLSALERDKIETERAELETKI 455 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 L +LGS R+ E+++E+L ++++GD RRT I ++ D + +++V++ L+ Sbjct: 456 NWLKEVLGSEARIYELLKEDLIEQKDKYGDARRTNI-EEMVTLSERDFVEEKEVILYLTQ 514 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 + YVK P ++ Q RGGKG + KE+D I + A+T + ++ F+ G+ Y +K Y Sbjct: 515 RDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQVKTY 574 Query: 606 QLPEATRGARGRPIVNL----LPLEQDERITAILPVTEF--------EEGVKVFMATANG 653 ++P ++R ++G+P+VN+ + E+ E+ + + E EG + AT G Sbjct: 575 EIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATKRG 634 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS----------GEDEVMLFSAEGKV 703 VK++ L + +R+ G VA++ GD L V L G++ ++L S GK Sbjct: 635 VVKRSSLAKLKAIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSKNGKA 694 Query: 704 VRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-----VPRGDGAILTATQNGYGKRTAV 758 + F E +R MG GVRG+RL + D++ S+ V + +T T+ GYGKRT + Sbjct: 695 IFFHEEELREMGRYAAGVRGMRLEKDDEIASVEALDVGVSKEKSRAVTITEKGYGKRTKL 754 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRN 818 Y R KGVISIK ERNG VV QV + D++M+ T G + + V IS+ GRN Sbjct: 755 DAYRETHRGGKGVISIKTGERNGKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRN 814 Query: 819 TQGVILIRTAEDENVVGLQRVAEPV 843 TQGV ++ + E VV + ++ Sbjct: 815 TQGVRIMNVKKGERVVAVDILSATE 839 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 81/538 (15%), Positives = 183/538 (34%), Gaps = 64/538 (11%) Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRH--APTPAEAKTALVA 412 R + R E+ + I+ N ++E I E+ + L Sbjct: 239 YETGRGSIRIRAKAEIEVKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRD 298 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 + G + +AG ++A + + + + A++D + LT E Sbjct: 299 ESDRKGMRIVIELKAGANSAIILNRLYKHTQLENTFGVINL---ALIDGEPRVLTLKELI 355 Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED 532 + ++ I L L A++ + +++ + + R + A+ Sbjct: 356 ECYIKH-RKEVTIRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIK-AASDTKTAKSA 413 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 LI + ++ + + + LS A R A ++ + + Sbjct: 414 LIARFELSEEQAKE--ILDMRLSRLSALERDKIETERAELETKINWLKE----------V 461 Query: 593 FSSRGRVYSMKVYQLPEATRG---ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMA 649 S R+Y + L E AR I ++ L + + + EE + Sbjct: 462 LGSEARIYELLKEDLIEQKDKYGDARRTNIEEMVTLSERDFV---------EEKEVILYL 512 Query: 650 TANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 T VK+ F + GK I+ + D+++ S + ++ F+ GK + K Sbjct: 513 TQRDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQVK 572 Query: 708 ESSVRAMGCNTTGVRG-------IRLGEGDKVVSLIVPRGD-----------GAILTATQ 749 + ++ G I E +K V+ + + ++ AT+ Sbjct: 573 TYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATK 632 Query: 750 NGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD----------CDQIMMIT 799 G KR+++A+ + GV++++ T + + V + + I++ + Sbjct: 633 RGVVKRSSLAKLKAIR--STGVVAVRTT-KGDSLADVVLIKPSLDSQDRGAGQNGIILSS 689 Query: 800 DAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE 857 G + E+ +GR GV +R +D+ + ++ + V +E + + Sbjct: 690 KNGKAIFFHEEELREMGRYAAGVRGMRLEKDDEIASVEALDVGVSKEKSRAVTITEKG 747 >UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicutes RepID=PARC_BACSU Length = 806 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 327/843 (38%), Positives = 493/843 (58%), Gaps = 44/843 (5%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + +EE + + Y+ +I RALPD RDGLKPV RR+LYAM+ GN ++K ++ Sbjct: 4 PELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFR 63 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K+A+ VG+VIG YHPHGDS+VY+ +VRM+Q + +R +L++ GN GSIDGD AAMRYTE Sbjct: 64 KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL+ IA EL+ D++K TV+FV N+D T K P V+P PNLLVNGS+GI+ G AT+IPP Sbjct: 124 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 H+L EVI+ + I S++ LME I GPDFPT II G GI +AY TG+GK+ IR Sbjct: 184 HHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRG 243 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 +AE+E + GRE I++ EIP++VNKA L++K+ E +K+VEGIS +RDE+D+ G+R+V Sbjct: 244 KAEIETI-RGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVV 302 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+K++A + +LN LY T LQ+++ NMVA+H+ +P +M+L I+ A++ H++EVVT Sbjct: 303 IELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTN 362 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R+++EL+KA+DR HI+E L AL+ +D +I IR + +AK L+A Sbjct: 363 RSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK----------- 411 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Y TE QA+AI+ L+L +LT + L +E +EL + Sbjct: 412 -----------------------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKK 448 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRT--EITANSADINLEDLITQEDVVVT 542 I EL IL + +L++VI L+ +++++ D RR+ E INLE ++ EDV VT Sbjct: 449 IEELESILSNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVT 508 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 ++ GY+K + A G +K+ D + NT D +L F+++G Sbjct: 509 VTKDGYLKRTSQRSFAASNGQDFG-----MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYC 563 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 V+QLP+ G+ NL+ +++DE I +P+ EF+ + T NG VKKT LT Sbjct: 564 PVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLFFTKNGMVKKTELTH 623 Query: 663 FNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 + R + VA+ L DELI V +T+GE ++ + + G + F E V +G GV Sbjct: 624 YKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGV 683 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN- 780 +GI L E D VVS + + +I+ TQ G KR +++E+ SRA +GV+ ++ ++N Sbjct: 684 KGINLKEDDFVVSGEILQQSDSIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNP 743 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 VV ++M T+ G + E+ R + G E V + R+ Sbjct: 744 HRVVALFACGLEQRLMAETEKGDRKELQTKELRTNDRYSNGSFFFDEEESGKVTAVWRLH 803 Query: 841 EPV 843 Sbjct: 804 TEQ 806 >UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7J5_MYCH7 Length = 853 Score = 851 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 342/851 (40%), Positives = 532/851 (62%), Gaps = 38/851 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + + I+P+ IE+E+K+S+LDY+MSVIV RALPDVRDGLKPVHRR+LY M LG Sbjct: 39 LESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSG 98 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +YKKSAR+VGDV+GKYHPHGD++VY+++VRMAQPFSLRY LVDG GNFGSIDGD AAAM Sbjct: 99 TSYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAM 158 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+KI+++++ L+K TVDF NYD +E P+V+P K PNLLV+G SGIAVGM T Sbjct: 159 RYTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMT 218 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL E+I+ + + + I I L+ +PGPDFPT A I G++GI +AY TG+G Sbjct: 219 KIPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSF 278 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IRA+A++E + +GR II +EIPY+V K +IEK+A LV+ K++ GI +RDES + G Sbjct: 279 IIRAKAKIE-NLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHG 337 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +R+V E+K+ E++LN LY T LQ+++ INM+AL +G PK+MNL I ++ H++E Sbjct: 338 IRVVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKE 397 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + R F+L KA ++ ++LE + VA+ NID +I++I+ + + A+ L Sbjct: 398 INLRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL---------- 447 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y L Q +AI+++RL +LT L EKL +E +E Sbjct: 448 ------------------------AHTYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEE 483 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L +I+E+ I+ S +L+++I E+ + V QFGD RR+EI ++ EDLI E V+ Sbjct: 484 LKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVI 543 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 ++L+ YVK L EY Q RGG G A+ ++D + L + NT +L SS +++ Sbjct: 544 ISLTQNNYVKKMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIF 603 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++ +Q+P+ ++ +G PI+NL+ LE++E I+ ++P + + + +A G +KKT L Sbjct: 604 KLRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTAL 663 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLT--SGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 + F + GK+A+KL + D L+ + + + +++ S++G V R+ +R G Sbjct: 664 SAFRNITKNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRDSGRTA 723 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GV+GI+L EG K++ + I + ++ G+GK+T V EY R TKG++S+ + Sbjct: 724 IGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLD-AK 782 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + G +V + + + ++ T G +R + + I+ R T+GV +I + + + + Sbjct: 783 KAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSL 842 Query: 839 VAEPVDEEDLD 849 +++ E+ + Sbjct: 843 ISKNETEKQNE 853 >UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZG6_BACS4 Length = 834 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 326/872 (37%), Positives = 498/872 (57%), Gaps = 51/872 (5%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + +E+ + + Y+ +I RALPD RDGLKPV RR+LYAM N +K ++K Sbjct: 5 ERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFRK 64 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 +A+ VG+VIG YHPHGDS+VYD ++R +Q + +R++LV GN GSIDGD AAMRYTE Sbjct: 65 AAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRYTEA 124 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL+ I+ EL+ D+EK+TVDF+ N+D + + P V+P++ PNLLVNGS+GI+ G AT+IPPH Sbjct: 125 RLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIPPH 184 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 +L EVI+ + +++ D +++ LM+HI GPDFPT I G G+++AY TG+GK+ +R + Sbjct: 185 HLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTIQGVDGLKKAYETGKGKIVLRGK 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 AE+E D + G++ I++ EIPY+VNKA L++++ EL +K+V+GI+ +RD++D+ G+RIV+ Sbjct: 245 AEIE-DVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRIVV 303 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K++A + +L+ LY T LQVS+ NMVA+ + PK++ LK ++ A++ H++EVVTRR Sbjct: 304 ELKKEADSKGILHYLYKNTDLQVSYNFNMVAIFNKTPKLLGLKHMLEAYINHQKEVVTRR 363 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T F+L KA++RAHI+E L A++ +D +I+ IR + +AK L Sbjct: 364 TKFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQ-------------- 409 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 +Y TE QA+AI+ L+L +LT + L +E EL I Sbjct: 410 --------------------DMYQFTEPQAEAIVTLQLYRLTNTDVTTLEEEASELKKLI 449 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVVTL 543 +L IL S L+ I+ EL+ +++++ + RRT I D INLE +I EDV VT+ Sbjct: 450 EKLEAILSSEKNLINEIKRELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTV 509 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + +GYVK L Y A G +KE D + L NT D +L F+ +G + Sbjct: 510 TKEGYVKRSSLRSYAASNGEPPG-----MKETDRLLYSLEINTTDTLLLFTRKGSFLFLP 564 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 V+QLPE G+ + NL+ ++ D+ I +PV EF + V AT G VKKTVL+E+ Sbjct: 565 VHQLPEIRWKDSGQHVANLVAMDNDDDILTAIPVKEFNDSEYVLFATKLGMVKKTVLSEY 624 Query: 664 NRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 722 R + +A+KL DE+I V L+ G ++ + G + F E V A G T GV+ Sbjct: 625 KAQRNSKALMAVKLKKDDEVISVTLSDGTHDIFFATHTGYGLWFTEEEVSATGQRTAGVK 684 Query: 723 GIRLGEGDKVVSLIVPRGD--GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 I L + D VVS + + + + TQ K+ + + SRA +G++ +K +R Sbjct: 685 AINLKKDDFVVSCMSFKEESPPDLFLVTQRAAYKKMKLNVFEKTSRAKRGLVMLKELKRY 744 Query: 781 -GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 V + + I + T G V+ I R T G L T + V+ + Sbjct: 745 PHRVASLLPITKYGSIFVQTKNGNTDTIEVASIRSNDRYTNGSFLFDTGDTGEVIDVW-- 802 Query: 840 AEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDE 871 +E D D D D Sbjct: 803 ---FEEGDAPNTDLDDEGSSRNAINNADDDQT 831 >UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y5U7_PHATR Length = 818 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 338/849 (39%), Positives = 486/849 (57%), Gaps = 60/849 (7%) Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 81 + YA+S+I+GRA+PD RDGLKPVHRR+LYAM+ L N ++K ARVVG+V+GK+HPHG Sbjct: 1 MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60 Query: 82 DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH-ELMADLEK 140 D AVYD +VR+AQ FS Y L+DG GNFGSID D AAAMRYTE RL K++ L+ DL+ Sbjct: 61 DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120 Query: 141 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYID- 199 +TVDF+ N+DG E P V+P K+P LL+NGSSGIAVGMATNIPPHNL E++ C A + Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180 Query: 200 ---DEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV-----D 251 ++ + L++ +PGPDFPT A I G E+ Y TG G + +RA ++E Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASILSTGGTEKLYTTGNGGIVMRAVTKIEKITTGRK 240 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 + R IIV E+PYQVNKA L+EKIA LV EK+++GI+ LRDESD+DG+R+VIE+KRDA Sbjct: 241 SSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRDA 300 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHG--------QPKIMNLKDIIAAFVRHRREVVT 363 V VVLNNLY +T LQ +F N +AL P+ L+ + F+ R E + Sbjct: 301 VAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETIR 360 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 R++ F+L K R+HI+ L +AL +D +I+++R + A+ AL Sbjct: 361 RKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIE---------- 410 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + +Q AIL L+L +LT L KL E +L + Sbjct: 411 ------------------------LGTSSEQTDAILKLQLGQLTRLNKGKLESEKADLEE 446 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDVVVT 542 L +L D + +V+REE + ++FG +R++ I + D DLI V+ Sbjct: 447 SRESLTHLLEVDDAVYDVMREEFIDMMKRFGGERKSSIIVEDDGDFCDMDLIENSRSVIV 506 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAAR---IKEEDFIDRLLVANTHDHILCFSSRGRV 599 ++ GY+K PL +E+Q RG +GK + + N HD +L + G Sbjct: 507 VTRGGYIKRMPLKTFESQGRGTRGKRGTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIA 566 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 Y ++ YQ+P A R A+G+PI ++LP+ DE ITAILPV+EF + V + T G +K+T Sbjct: 567 YGLRAYQVPIAGRTAKGQPIPSVLPVRGDEVITAILPVSEFSDEEYVVLTTEQGWIKRTP 626 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L F +L + G L DGD L ED++++ + G RF + +R G + Sbjct: 627 LDAFEKLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTVGGMATRFGAAKLRPTGRTSR 686 Query: 720 GVRGIRLGEGDKVVSLIVPRGDG--AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GVR ++L EGD + + V G ILT T GYGKR A +E+ ++R GVI+IK Sbjct: 687 GVRAMKLREGDTIADMNVLSGKNKEYILTVTAQGYGKRIATSEFRAQARGGVGVIAIKFK 746 Query: 778 E--RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 V V D ++I++IT G +VR + S+I GR+ GV++ R + +++ Sbjct: 747 RGQEEDKVSCLRIVKDDEEILVITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHISS 806 Query: 836 LQRVAEPVD 844 + V + + Sbjct: 807 VSIVPQYEE 815 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 90/247 (36%), Gaps = 24/247 (9%) Query: 628 DERITAILPVTEFE--------EGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIKL- 676 ER ++I+ + + V + T G +K+ L F GK Sbjct: 478 GERKSSIIVEDDGDFCDMDLIENSRSVIVVTRGGYIKRMPLKTFESQGRGTRGKRGTSDG 537 Query: 677 --VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG--VRGIRLGEGDKV 732 E+ + D +++ + G + V G G + + GD+V Sbjct: 538 GESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQVPIAGRTAKGQPIPSVLPVRGDEV 597 Query: 733 VSLIV----PRGDGAILTATQNGYGKRTAVAEY-PTKSRATKGVISIKVTERNGLVVGAV 787 ++ I+ + ++ T+ G+ KRT + + SR ++I E + Sbjct: 598 ITAILPVSEFSDEEYVVLTTEQGWIKRTPLDAFEKLSSRG----LTIATLEDGDRLKWCH 653 Query: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 +V + D I++ T G R +++ GR ++GV ++ E + + + ++ E Sbjct: 654 RVRNEDDILIGTVGGMATRFGAAKLRPTGRTSRGVRAMKLREGDTIADMNVLSGKNKEYI 713 Query: 848 LDTIDGS 854 L Sbjct: 714 LTVTAQG 720 >UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chroococcales RepID=Q2JQA2_SYNJB Length = 819 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 321/849 (37%), Positives = 481/849 (56%), Gaps = 64/849 (7%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + +++ E++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG ++ Y+K A Sbjct: 1 MIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 60 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDV+GKYHPHGD AVYD +VRM Q FS RY LV G GNFGS+D D AAMRYTE RL Sbjct: 61 RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 120 Query: 128 AKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A+++H L+ + +E VDF+ N+DG++ P V+P ++P LL+NGSSGIAVGMATNIPPHN Sbjct: 121 AELSHTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHN 180 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV++G LA ID D+S E L+ IPGPDFPT I +GI AY TGRG + +R A Sbjct: 181 LGEVVDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQGIRAAYLTGRGSITLRGVA 240 Query: 247 EVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 E + R +++ E PYQVNKA IEK+AEL + R+ GI+ LRDESD+ G+R Sbjct: 241 RFEEIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIR 300 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +V+E+KR+A + VL LY T LQ +FG ++AL +G+P+ ++LK+I+ F++ R + Sbjct: 301 VVVELKREANPQAVLQQLYKLTPLQSNFGAILLALVNGEPRQLSLKEILQHFLQFREATL 360 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 R EL++ + +A + + +ALA+++ +IEL+R AP AK L Sbjct: 361 NRMFRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTR--------- 411 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 T QQA+ IL + L++LTGLE E+L E+ +L Sbjct: 412 -------------------------LGCTPQQAETILAMPLRRLTGLERERLHQEHAQLQ 446 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI------TANSADINLEDLITQ 536 +I EL +L +L+ +++EL +++ FGD RRT+I A A I + + Sbjct: 447 TRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDPRRTQILSASELEAEVAQIPSGEETEE 506 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ++ + +GYV+ PL R + A R ED + L IL ++ Sbjct: 507 THFLLQFTRKGYVRRLPLPS-----RRSRSNPAQRELGEDVLVGLECVTLEQEILVLTAG 561 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G+ +++ + +P +T +RG P+V LLP E I A + + + + G +K Sbjct: 562 GKAFTLPIAGIPLSTGSSRGVPLVTLLP--NPEPIVATFTLDPDPGKASLVVLSRQGRIK 619 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVRFKESSVRA 713 + L E L G +KL +GDEL L + + V+L ++ G+V+R + Sbjct: 620 RLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPL 679 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 MG G +RLG +++V + + G ++ A++ GY KR ++ E P R G + Sbjct: 680 MGRAAMGSPALRLGRTERIVGMALVPSQGILVLASRLGYLKRLSLEEIPILERGQVGAPA 739 Query: 774 IKVTERNGLVVGAVQVDDCDQ------IMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 ++R ++VG V + + + +IT++ + +EI + R+ G +L++ Sbjct: 740 FHFSDRGDVLVGLVGLPPELERPSHLQLDVITESEQVYSFSPAEIPLQSRSGGGSLLVK- 798 Query: 828 AEDENVVGL 836 E V L Sbjct: 799 --GERVREL 805 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 97/237 (40%), Gaps = 9/237 (3%) Query: 612 RGARGRPI-VNLLPLEQDERITAILPVTEFEEGVKVFM-ATANGTVKKTVLTEFNRLRTA 669 + G P +L + E A +P E E + T G V++ L R+ Sbjct: 474 KKTFGDPRRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRLPL---PSRRSR 530 Query: 670 GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 A + + D L+G++ + E E+++ +A GK + + ++ GV + L Sbjct: 531 SNPAQRELGEDVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPN 590 Query: 730 -DKVVSLIVPRGDG---AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 + +V+ D +++ ++ G KR A+AE ++ V+ +K + G Sbjct: 591 PEPIVATFTLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAAL 650 Query: 786 AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 +++ T G ++R V +I ++GR G +R E +VG+ V Sbjct: 651 WDPDHQGYSVVLATSGGRVLRLDVQQIPLMGRAAMGSPALRLGRTERIVGMALVPSQ 707 Score = 46.1 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 731 KVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD 790 ++ S +L T+ GY +R + SR ++ + + ++VG V Sbjct: 497 QIPSGEETEETHFLLQFTRKGYVRRLPLP-----SRRSRSNPAQRELGE-DVLVGLECVT 550 Query: 791 DCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED-ENVVGLQRVAEPVDEEDLD 849 +I+++T G ++ I + +++GV L+ + E +V + + L Sbjct: 551 LEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPNPEPIVATFTLDPDPGKASLV 610 Query: 850 TIDGSA 855 + Sbjct: 611 VLSRQG 616 >UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorferi group RepID=GYRA_BORBU Length = 810 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 334/840 (39%), Positives = 525/840 (62%), Gaps = 39/840 (4%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 + +I V IE+E+K+SYL+YAMSVIV RALPDVRDGLKPVHRR+LY+M +G +KA Sbjct: 5 ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 +KK+ R+VGDV+GKYHPHGD ++YD +VR+AQ FSLRY ++ GQGNFGSIDGD AAMRY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE ++ KI ++ D++KETV+F NYD + P++MP+ P LLVNGSSGIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PHNL E+ + + +D+E+ SI L++ + GPDFPT I + +AY+TG+G V I Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 RAR +E A+ R IIV EIPY VNK+ L+ K+A L KE+++EG+ +RDESD++G+R Sbjct: 245 RARYHIEERAE-DRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIR 303 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IV+EVKR V++N LY T+ + F IN +AL +G PK +NL++++ F+ HR+ ++ Sbjct: 304 IVLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RR F+LRKA+++AH+LE L +AL NID +I++I+ + +A+ LV+N Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSN--------- 414 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + L+E QA ++LD+RLQKLT LE KL +E LL Sbjct: 415 -------------------------FGLSEIQANSVLDMRLQKLTALEIFKLEEELNILL 449 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLITQEDVV 540 I + IL + R++ +IREE + +FGD+RRT+I ++ DL+ +E++V Sbjct: 450 SLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIV 509 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V L+ +G++K +EY+ Q GGKG S+ + + D I L NTHD++ S+ G++Y Sbjct: 510 VMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLY 569 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + Y++ +++R ++G+ I L+ L E I I + + + + TA+G + + Sbjct: 570 LINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 629 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 T+F +++ G + IKL D D + ++ +++V+ S +G F VR T G Sbjct: 630 TDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG 689 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT-ER 779 V G++L EGD V ++ + + +L ++NGYGKR +++ R G S K + ++ Sbjct: 690 VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKK 749 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 G VV A+ V + D+I++++ +RT ++S G++ +G+ ++ +++++V + + Sbjct: 750 AGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFL-DNDSLVSVSKF 808 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 11/224 (4%) Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGV 685 DE + ++ V M T G +K+ E+ T GK + L DGDE++ Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIA 550 Query: 686 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLI---VPR 739 + D + + S EGK+ ++ + G I LG+ ++++++ Sbjct: 551 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLT 610 Query: 740 GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMIT 799 D +L T +G R ++ ++GVI IK+ ++ V A V ++++ ++ Sbjct: 611 DDAYLLLTTASGKIARFESTDFKAVK--SRGVIVIKLNDK-DFVTSAEIVFKDEKVICLS 667 Query: 800 DAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 G+ ++ + R TQGV ++ E + V + V E Sbjct: 668 KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENP 711 >UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5RLZ1_BORDL Length = 815 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 336/842 (39%), Positives = 533/842 (63%), Gaps = 39/842 (4%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + + ++ + IE+E+++SYL+YAMSVIV RALPDVRDGLKPVHRR+LY+M+ +G + Sbjct: 8 IENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSD 67 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K++KK+ R+VGDV+GKYHPHGD ++Y+ +VR+AQ FSLRY +V GQGNFGSIDGD AAM Sbjct: 68 KSFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAM 127 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+AKIA EL+ D++K+TV+F NYD + P+V+P P LLVNGSSGIAVGMAT Sbjct: 128 RYTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMAT 187 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+ PHNL EV + + ++ +D+SI L+ I GPDFPT A I + +AY TG+G V Sbjct: 188 NMAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSV 247 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IRAR +E ++ +II+ +IPY VNK+ L+ KIA L+KE+++EG+S +RDESD++G Sbjct: 248 VIRARYHIEEKSE-DNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREG 306 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIV+E+K+ VV+N LY T+L+ +F IN +AL +G PK +NL+++I+ F+ HR+ Sbjct: 307 IRIVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKN 366 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ RR F+L++A+++AHILE L +AL NID +IE+IR + +A+ ++ Sbjct: 367 ILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMRE------- 419 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + L+E QA +ILD++LQKLT LE K+ ++++ Sbjct: 420 ---------------------------FQLSEIQANSILDMKLQKLTSLEVAKIEEDFQV 452 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLITQED 538 +L I + IL S R++ +IREE+ + +FGD RRT+I ++ DL+ +E+ Sbjct: 453 VLALIKDYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQREN 512 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V+V L+ QG++K EY+ Q GGKG + +++ D ++ L NTHD +L S+ G+ Sbjct: 513 VIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGK 572 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 +Y + Y + +++R +RG+ I L+ L + E I AI +E + + TANG + + Sbjct: 573 LYVINAYGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDNYLLITTANGKIARI 632 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 F +++ G + +KL D D + ++ S +D+++ S +G F + +R T Sbjct: 633 ETEGFKTVKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGT 692 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT- 777 GV G+++ EGD ++ + + +L ++NGYGKR V++ R + G K + Sbjct: 693 QGVSGMKVREGDMLIKALAIKQGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSD 752 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 E+ G VV A+ V D+I++I+ + ++RT V +IS G++ +G+ ++ E + +V + Sbjct: 753 EKAGEVVDAITVSQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLVAVS 811 Query: 838 RV 839 + Sbjct: 812 KF 813 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 82/510 (16%), Positives = 176/510 (34%), Gaps = 41/510 (8%) Query: 348 KDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN---IDPIIELIRHAPTPA 404 +++I A+ + VV R K+ D I+ N + I L+ Sbjct: 234 ENLIKAYTTGKGSVVIRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLE 293 Query: 405 EAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI-LDLRL 463 + + + +++ D L +R I L L Sbjct: 294 GVSDIRDESDREGIRIVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNL 353 Query: 464 QKLTGLEHEKLLDEYKELLDQIAELLRILGSAD-RLMEVIREELELVREQFGDKRRTEIT 522 ++L + ++ K +L + E ++E + L + R + + Sbjct: 354 REL----ISEFIEHRKNILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLV 409 Query: 523 ANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLL 582 ++ + + + E ++ + + + Q+ + EEDF L Sbjct: 410 KDARECIMREFQLSE-----------IQANSILDMKLQKLTSLEVAKI---EEDFQVVLA 455 Query: 583 VANTHDHILCF-SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE 641 + ++ IL S + ++ L R I+ DE + + Sbjct: 456 LIKDYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIY------DEEVLKTSMSDLMQ 509 Query: 642 EGVKVFMATANGTVKKTVLTEFN--RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSA 699 + + T G +K+ + E+ + G + L D D++ + D +++ S Sbjct: 510 RENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISN 569 Query: 700 EGKVVRFKESSVRAMGCNTTGV---RGIRLGEGDKVVS---LIVPRGDGAILTATQNGYG 753 EGK+ ++ + G I LGE +++++ D +L T NG Sbjct: 570 EGKLYVINAYGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDNYLLITTANGKI 629 Query: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 813 R + T ++GVI +K+ ++ V A V D+I+ I+ G ++I Sbjct: 630 ARIETEGFKTVK--SRGVIIMKLDDK-DFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR 686 Query: 814 IVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 + R TQGV ++ E + ++ + + Sbjct: 687 LTHRGTQGVSGMKVREGDMLIKALAIKQGS 716 >UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FW91_DESHD Length = 808 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 343/848 (40%), Positives = 509/848 (60%), Gaps = 53/848 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MS IT ++EE L SYL Y+ VI+ RA+PDVRDGLKPVHRR++YAM+ LG + Sbjct: 1 MSIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPD 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K Y KSAR+VGD +GKYHPHGDS++YD VRMAQP++ RY L+DGQGNFGSIDGD AAAM Sbjct: 61 KPYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+R+ ++ + D+EK+ + F NYD EK P V+P+ PNLLVNG SGIAVGMA+ Sbjct: 121 RYTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMAS 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NIPPHNL EV+ + ID+ +++E LME + GPDFPT +I G +G EAYR+GRGKV Sbjct: 181 NIPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKV 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 +R +A +E K G+ I++ EIP+QV+K+ L KI + ++EGIS +RDESD++G Sbjct: 241 TMRGKAIIE-SGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRR 359 +R+V+E K+DA + +L LY TQLQ +FGI + + G P+++ LK+I ++++HRR Sbjct: 300 IRLVVECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRR 359 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVV RRT +EL KA+ RAHILE L +A+ N+D ++++IR + TPA AK L+ Sbjct: 360 EVVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR------ 413 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + +E QAQAILD++LQ LT LE + + EY Sbjct: 414 ----------------------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYA 445 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI---TQ 536 E+L IAEL IL +++ +I+ EL+ + +Q+GD+RRT I ++ + Sbjct: 446 EILKLIAELESILADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPE 505 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 + + V L+ +G++K P RR A K+ D + + + D + F+ Sbjct: 506 KPMEVLLTRKGFIKQIPTPT----RRSQINAIAFAFKDGDVLLEHVSCTSKDTLYFFTHS 561 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G+ Y K + EA +GR + NL PL ++ERI A++ + E +EG T +G V Sbjct: 562 GKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQYFVFVTKDGQVM 621 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 ++ + +F RTA A+ L + DE++ V L++GE E+ L S +G+ +RF E+ V MG Sbjct: 622 RSPVKDFLNARTA--EAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMGR 679 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGD-----GAILTATQNGYGKRTAVAEYPTKSRATKGV 771 + GV+G+ L EGD VV ++ + G ++T T+ GY KRT++ EY + RA +G+ Sbjct: 680 KSRGVKGMTLNEGDYVVDALLIQPGADGETGDLITVTEQGYVKRTSLEEYKPQGRAGRGI 739 Query: 772 ISIKVT-ERNGLVVGAVQVDDCDQIM--MITDAGTLVRTRVSEISIVGRNTQGVILIRTA 828 K+ E+ G +V +QV + + +I G + + R G L+ Sbjct: 740 AIAKIDAEKTGYLVSLIQVGPKEDKLLHIIQAGGAVTGVEAQSLKRESRVKSGAGLVNVI 799 Query: 829 EDENVVGL 836 ++ +V + Sbjct: 800 INDYIVHV 807 Score = 99.7 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 61/350 (17%), Positives = 125/350 (35%), Gaps = 26/350 (7%) Query: 521 ITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED---- 576 + +++ I + L+ G + SE +AQ E D Sbjct: 383 LVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEVQAQAILDMKLQHLTNLELDGIRK 442 Query: 577 -FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAIL 635 + + L + + IL +VY++ +L + +LP + + + Sbjct: 443 EYAEILKLIAELESILA--DINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDY-- 498 Query: 636 PVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL--VDGDELIGVDLTSGEDE 693 E E + T G +K+ R + AI DGD L+ + +D Sbjct: 499 SAFEEPEKPMEVLLTRKGFIKQIP----TPTRRSQINAIAFAFKDGDVLLEHVSCTSKDT 554 Query: 694 VMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRGD---GAILTA 747 + F+ GK K V G G L E +++V+++ R + + Sbjct: 555 LYFFTHSGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQYFVFV 614 Query: 748 TQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRT 807 T++G R+ V ++ + ++ + E+ +V ++ + + G +R Sbjct: 615 TKDGQVMRSPVKDFL----NARTAEAMGLKEQ-DEIVKVFLSAGEGELFLASLQGQAIRF 669 Query: 808 RVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE 857 +E++ +GR ++GV + E + VV + D E D I + Sbjct: 670 AEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLITVTEQG 719 >UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC7F Length = 819 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 344/856 (40%), Positives = 518/856 (60%), Gaps = 48/856 (5%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 L+ + P +EE + + Y+ +I RA+PDVRDGLKPV RR+LYAM GN +K Sbjct: 2 SLSEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKP 61 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Y+KSA+ VGDV+G YHPHGDS++Y+ +VRMAQP+ + ++LVDG GN+GS D D AAAMRY Sbjct: 62 YRKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRY 121 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL+ IA EL+ D+EK TV F DN+D T K P V+P++ PNLLVNG+SGI+ G AT I Sbjct: 122 TEARLSPIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEI 181 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL EVI+ C+A + +I ++ +M I GPDFPT II G GI +AYRTG+G+VY+ Sbjct: 182 PPHNLREVIDACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYL 241 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 R++ +E + G++ I++ EIPYQV K+RL+ + + EK+VEGI+ +RDES ++G+R Sbjct: 242 RSKTVIE-SLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLR 300 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IV+E+K+DA +L L+ +T LQ+++ NMVA+ + P+ + LK +++A++ H+REVV Sbjct: 301 IVVELKKDADANGILAYLFKKTDLQITYNFNMVAIVNKTPQQLGLKAMLSAYIDHQREVV 360 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 T RT FEL KA DRAH+LE L AL +D +I I+ + +A+ L Sbjct: 361 THRTQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQ----------- 409 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 ++ TE+QA +IL L+L +LT LE L E EL Sbjct: 410 -----------------------WMFGFTERQADSILTLQLYRLTNLEIHSLQKELDELT 446 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI--NLEDLITQEDVV 540 +I L IL S +L+ VIR+EL +RE++G RR+ I +I NLE L+ EDV+ Sbjct: 447 KKIEGLRAILDSDKKLIGVIRKELIEIREKYGIDRRSVIQEEVEEIKVNLEVLVNAEDVL 506 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VTLS++GY+K + + R G ++ +KE D+I RL NT +++L F+SRG+ + Sbjct: 507 VTLSNEGYIKRTSMLSF---TRSGGELESSGVKEGDYITRLFEVNTLENLLIFTSRGQYF 563 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE-GVKVFMATANGTVKKTV 659 + V+Q+PE G IVN++ + +++ I +++PV+ F+E G + + G VK+T Sbjct: 564 LLPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEAGKSLVFVSRKGQVKRTD 623 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L E+ R+ A K+ D +I V ++ +++L S EG +RF E V AMG + Sbjct: 624 LKEYVTKRSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMSIRFNEQEVNAMGRVSG 683 Query: 720 GVRGIRLGEGDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GVRGI+L +GD+VV+ + +G ILT T GYGKR+ + +YP +SR KG+ + + E Sbjct: 684 GVRGIQLRDGDEVVAALWVENDEGEILTITDLGYGKRSLLLDYPAQSRGGKGMATFEFKE 743 Query: 779 ------RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN 832 +VGA + QI ++ G ++ I+ R + G +L ++ Sbjct: 744 GKRVKPNGSAIVGAFYCREPLQINAYSEDGQAFPIHTEKVPIMERKSIGKLLADVGKNGQ 803 Query: 833 VVGLQRVAEPVDEEDL 848 +V L + ++ Sbjct: 804 IVDLVSLPHAELGKEG 819 >UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C558B Length = 883 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 347/755 (45%), Positives = 499/755 (66%), Gaps = 10/755 (1%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I P++I +EL+ SYL YA SVI+ RALPDVRDGLKP RR+L AMN LG + K A Sbjct: 23 INPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCA 82 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 ++G+ + +YHPHGD+++YD++VRMAQ ++LRY LV GQGNFGSI G AA RYTE RL Sbjct: 83 GIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPPAAHRYTEARL 142 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A EL+ DLE++TVDF+DNYDG + P V+P K PNLLVNGS GIAVGMAT+IPPHNL Sbjct: 143 TPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNL 202 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 EV + +D+ ++ L++ IPGPDFPT II GR+G+ EAY G GK+ +RARA+ Sbjct: 203 REVCKALVLLLDNPGATLADLIQIIPGPDFPTGGIIMGRQGLLEAYARGAGKITLRARAQ 262 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK---DGMRIV 304 V + K +I++ E+P+QV + ++E+IA LVKE+R+ +S +RDES + +R++ Sbjct: 263 VMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRLI 322 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 +E+KR +VLN LY T+LQ + I M+AL G+P+ + LK+++ F+ HR V+ R Sbjct: 323 VEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVDGRPRELTLKEMLQKFLDHRVHVIRR 382 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT F LR+A+ R H+LE +A+A+I+ +I++ R +P AEAK L + + Sbjct: 383 RTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALMQRAI 442 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 A + E Y +TEQQA+A+++LRL +L LE E++L EY +L + Sbjct: 443 GEGAFAALQREL------GAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLREL 496 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I +L + VIRE+LE + ++GD R+TE++ + D+++EDLI E VVT+S Sbjct: 497 IRGYETLLSDDANIHAVIREDLERMAAKYGDDRKTEVSDDGGDVDMEDLIVDEPNVVTIS 556 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H+G+VK L+EY Q RGGK +++ DF++ VA+T ++LCF++ GR+Y +KV Sbjct: 557 HEGFVKRMALTEYRVQGRGGK-GVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLKV 615 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++P A R + GR I N+L L + E+I++I+PV EF EG + MAT GTVKKT L ++ Sbjct: 616 YRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTVKKTDLMAYS 675 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +R G + I L +GDELI V LT DEV+L + +G +RF+ES++R MG GVRGI Sbjct: 676 NVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIRFRESAIRPMGRTARGVRGI 735 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 759 +LG+ D +V ++V DG +LT +NGYGKRT Sbjct: 736 KLGKDDALVGMVVADPDGLLLTVCENGYGKRTPFG 770 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 12/209 (5%) Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK-LVDGDELIGVDLTSGEDEVMLFSAE 700 + V + G VK+ LTE+ GK L D D + + S + ++ F+ Sbjct: 548 DEPNVVTISHEGFVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANT 607 Query: 701 GKVVRFKESSVRAMGCNTTGVRGI----RLGEGDKVVSLIVPRG---DGAILTATQNGYG 753 G++ K + G + G R I L EG+K+ S++ R +L AT+ G Sbjct: 608 GRMYWLKVYRIPTAGRTSPG-RAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTV 666 Query: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 813 K+T + Y + G+I I + E ++ D++++ T G +R R S I Sbjct: 667 KKTDLMAYSNVRQG--GIIGITLDE-GDELINVALTRANDEVVLSTQKGMAIRFRESAIR 723 Query: 814 IVGRNTQGVILIRTAEDENVVGLQRVAEP 842 +GR +GV I+ +D+ +VG+ Sbjct: 724 PMGRTARGVRGIKLGKDDALVGMVVADPD 752 >UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5 Tax=Thermoplasmatales RepID=Q9HJB6_THEAC Length = 796 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 343/836 (41%), Positives = 513/836 (61%), Gaps = 42/836 (5%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + +E E++ SYL+YAMSVIV RA+PDVRDGLKPV RRVLY+M LG +K YKK Sbjct: 2 HIMEKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKK 61 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+ +GKYHPHGD A+YD +VRMAQ FSLRY LVDGQGNFGSIDGDS AAMRYTE Sbjct: 62 CARIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 121 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL +IA ++M D+++ TV F N+DGT P+ +P+KIPNLL+NGSSGIAVGMATN+ PH Sbjct: 122 RLTQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPH 181 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NLTE+ + L +D D ++ L++++ GPDFP I+ + + EAYRTGRGKV ++ Sbjct: 182 NLTEICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG- 240 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 EVDA R +I+ IPY VNKA L++ IA+L K + ++ I+ ++DESD++G+RIVI Sbjct: 241 ---EVDATEDR-RLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVI 296 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 +V+ D + +VLN LY T L+ S GI + L QPK+MNLKD+I +F+ HR +V+ RR Sbjct: 297 KVRDDDIKPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRR 356 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + F L + ++R +L + A+ +ID ++E+++ + EA + L Sbjct: 357 SQFRLDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLR-------------- 402 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L ++Q +AIL++RLQ+L E E + E ++ +I Sbjct: 403 --------------------NEFDLNDRQIKAILEMRLQRLVNTEQESVRSEIAQIQAEI 442 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEI-TANSADINLEDLITQEDVVVTLS 544 +L I+ S DR ++ ++E+ +++++GDKRR+ I + +EDLI E+ ++ LS Sbjct: 443 KDLEEIILSEDRRIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLS 502 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 + G VK EY +QRRGGKG + +K D I ++ +HD + F++ GRV+ K Sbjct: 503 YGGLVKRVQADEYRSQRRGGKGVN-TSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKA 561 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++P+ +R + G L L Q ER+T I+ E+G + + T +G+VKKT Sbjct: 562 YEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPP-EKGYYLILVTRDGSVKKTAADPVF 620 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 +++G I L D DEL+ V T+G+ + + S++GK F S +R G + GVR + Sbjct: 621 DSKSSGLKIITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRETGRTSMGVRSM 680 Query: 725 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 784 RL EGD +++ V D IL+ ++ GYGKRT ++E+P R + GV+ + TER G V Sbjct: 681 RLNEGDTILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVS 740 Query: 785 GAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 A+ V D D++++++ +R + SEI R T GV L+ D+ V+ + Sbjct: 741 HAIPVRDEDEVILVSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 9/210 (4%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA-IKLVDGDELIGVDLTSGEDEVMLFSA 699 + M + G VK+ E+ R GK + D + + D V F+ Sbjct: 493 PNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIKSMIHCFSHDTVYYFTN 552 Query: 700 EGKVVRFKESSVRAMGCNTTGVRG---IRLGEGDKVVSLIVPRGDG--AILTATQNGYGK 754 G+V + K + + GV ++L +G++V ++ + ++ T++G K Sbjct: 553 TGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEKGYYLILVTRDGSVK 612 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 +TA + +I++ E + +V + +++ G SEI Sbjct: 613 KTAADPVFDSKSSGLKIITL---EDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRE 669 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 GR + GV +R E + ++ V D Sbjct: 670 TGRTSMGVRSMRLNEGDTILTAFVVNSDED 699 >UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepID=C8PKZ3_9PROT Length = 914 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 389/896 (43%), Positives = 561/896 (62%), Gaps = 72/896 (8%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +EI +++EE +K+SYLDY+MSVI+GRALPD RDGLKPVHRR+LYAMN LG + YK Sbjct: 8 NQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRQPYK 67 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGDVIGKYHPHGD+AVYD +VRMAQ FS+R VDGQGNFGSIDGD AAAMRYTE Sbjct: 68 KSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAAMRYTE 127 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 R+ +A EL+ DL+KETVDFV NYD + PDV+P ++PNLL+NGSSGIAVGMATNIPP Sbjct: 128 ARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIPP 187 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 H+L E++ G L +++++ S+E +M I GPDFPT II G++GI EAY+TGRG+V IRA Sbjct: 188 HSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIYGKKGIIEAYKTGRGRVKIRA 247 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + +E K ++ I++ E+PYQ NKARLIE+IA+LVKEK++EGIS +RDESD+DG+R+V Sbjct: 248 KTHIE--KKASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRDGIRVV 305 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KRDA+ E+VLNNL+ QT ++ +FG+ M+A+ +PKI L +++ F+ HR+ V+ R Sbjct: 306 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDGKEPKIFTLIELLKLFLNHRKTVIIR 365 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RTIFEL+KAR RAHILE L +AL NID +I++IR++ A+ L++ Sbjct: 366 RTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSR----------- 414 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 + L+E Q+ AILD+RL +LTGLE EK+ +E KE+L + Sbjct: 415 -----------------------FDLSEAQSGAILDMRLSRLTGLEREKIEEELKEILAE 451 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLS 544 I L IL S + + +I++EL ++++F R TEI + DI++EDLI E++VVT++ Sbjct: 452 IKRLDAILKSEELIEGIIKDELLEIKDKFKCPRITEIVDDYEDIDIEDLIANENMVVTIT 511 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 H+GY+K P YE Q+RGGKG+ A ++DFI+ +NTHD ++ + RG++Y +KV Sbjct: 512 HRGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKV 571 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 Y++PE +R A+G+ +VNL+ L DE+I AI+P T+F+ + T NG VK+T L+EF Sbjct: 572 YKIPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKSLVFFTRNGIVKRTNLSEFK 631 Query: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR------FKESSVRAMGCNT 718 +R+ G AI L + D L+ + E + + +G + + + Sbjct: 632 NIRSLGIRAISLDEDDTLVTALIAPNSAE-EMQNYKGGALSGDDLDGGEAEEILEQTE-- 688 Query: 719 TGVRGIRLGEGDKVVSLIV-----------PRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 + I G D++ I + + AT+ G + + + R Sbjct: 689 ---QDILEGSEDEISDEISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRI 745 Query: 768 TKGVISIKVTERNGLVVG-AVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 +GV IK E+ V+G A + D +I+ ++ G RT SE + R +GVI ++ Sbjct: 746 ARGVKGIKFKEKGDEVIGAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMK 805 Query: 827 TAE-DENVVGLQRVAEPVD-----------EEDLDTIDGSAAEGDDEIAPEVDVDD 870 ++G+ V E +D D+ +I + I V+ DD Sbjct: 806 LTNRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQSIRKAGRNTSGVIVVNVEGDD 861 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 563 GGKGKSAARIKEEDFIDRLLVANTHDHILCF-SSRGRVYSMKVYQLPEATRGARGRPIVN 621 G + + + I +++ +T++++L + +G + ++ + R ARG + Sbjct: 694 GSEDEISDEISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIK 753 Query: 622 LLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDG 679 + DE I A +++ +E + + G K+T +E+ GK + +KL + Sbjct: 754 FKE-KGDEVIGAAFILSDMQE---ILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNR 809 Query: 680 -DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP 738 ELIGV + E ++M + GK++R S+R G NT+GV + + EGD VVS+ Sbjct: 810 TGELIGVVMVDEEMDLMALTTSGKMIRVDMQSIRKAGRNTSGVIVVNV-EGDDVVSIATC 868 Query: 739 R 739 Sbjct: 869 P 869 >UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cyanobacteria RepID=Q2JY71_SYNJA Length = 849 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 321/847 (37%), Positives = 475/847 (56%), Gaps = 69/847 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + +++ E++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG ++ Y+K A Sbjct: 23 VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 RVVGDV+GKYHPHGD AVYD +VRMAQ FS RY LV G GNFGS+D D AAMRYTE RL Sbjct: 83 RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142 Query: 128 AKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 A+++H L+ + + VDF+ N+DG++ P V+P ++P LL+NGS+GIAVGMATNIPPHN Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 L EV++G LA ID+ D+S E L+ IPGPDFPT I +GI EAY TGRG + +R A Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQGIREAYLTGRGSITLRGVA 262 Query: 247 EVEVD----AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 E + R +I+ E PYQVNKA +EK+AELV + R+ GI+ LRDESD+ GMR Sbjct: 263 RFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMR 322 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +V+E+KR+A + VL LY T LQ +FG+ ++AL G+P+ ++LK I+ F++ R + Sbjct: 323 VVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGKPQQLSLKQILQHFLQFREATL 382 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 R EL++ + +A + + +ALA+++ +I+L+R AP A AK L Sbjct: 383 KRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTR--------- 433 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 T QQA+ IL + L++LT LE E+L E EL Sbjct: 434 -------------------------LGCTSQQAETILAMPLRRLTTLERERLYQEQAELQ 468 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLIT------Q 536 +IAEL +L +L+ +++EL +++ F D RRT+I + S I Sbjct: 469 ARIAELQGLLQDRRKLLNYLKKELRHLKKTFADPRRTQILSASELEAEAAQIPGGEAGED 528 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ++ L+ +GYV+ PL + + A R ED + L IL ++ Sbjct: 529 SRFLLQLTRKGYVRRLPLPGPRS-----RSNPAQRELGEDTLVSLECVTPEQAILVLTAS 583 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF--------EEGVKVFM 648 GR +++ + +P +T +RG P+V LLP E I A P+ + + Sbjct: 584 GRAFTVPIEGIPLSTGSSRGVPLVTLLP--NPEPIVAAFPLDPVRVSGAEHSPGEASLVV 641 Query: 649 ATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVR 705 + G +K+ L E L G +KL +GDEL L + V+L ++ G+V+R Sbjct: 642 LSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLR 701 Query: 706 FKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS 765 + MG G +RLG +++V + + G ++ A+++GY KR + E P Sbjct: 702 LDAEQIPLMGRAAMGSPALRLGRTEQIVGMALLPPQGILVLASRSGYLKRLPLGEIPILE 761 Query: 766 RATKGVISIKVTERNGLVVGAV------QVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 819 + GV + + + +VG V Q+ +I ++ + EI + GR+ Sbjct: 762 QGKVGVSAFHFSNKGDGLVGLVGFPPDLAAHPHLQVDVIAESERVHSFSPEEIPLQGRSG 821 Query: 820 QGVILIR 826 G +L++ Sbjct: 822 GGSLLVK 828 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 15/214 (7%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 E+ + T G V++ L R+ A + + D L+ ++ + E +++ +A Sbjct: 527 EDSRFLLQLTRKGYVRRLPL---PGPRSRSNPAQRELGEDTLVSLECVTPEQAILVLTAS 583 Query: 701 GKVVRFKESSVRAMGCNTTGVRGIRLGEG------------DKVVSLIVPRGDGAILTAT 748 G+ + ++ GV + L +V G+ +++ + Sbjct: 584 GRAFTVPIEGIPLSTGSSRGVPLVTLLPNPEPIVAAFPLDPVRVSGAEHSPGEASLVVLS 643 Query: 749 QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR 808 + G KR A+AE S+ V+ +K + G +++ T G ++R Sbjct: 644 RQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLRLD 703 Query: 809 VSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 +I ++GR G +R E +VG+ + Sbjct: 704 AEQIPLMGRAAMGSPALRLGRTEQIVGMALLPPQ 737 Score = 48.8 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 6/130 (4%) Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 E ++ +L T+ GY +R + R+ + +V Sbjct: 515 AEAAQIPGGEAGEDSRFLLQLTRKGYVRRLPL----PGPRSRSNP--AQRELGEDTLVSL 568 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 V I+++T +G + I + +++GV L+ + + +PV Sbjct: 569 ECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTLLPNPEPIVAAFPLDPVRVS 628 Query: 847 DLDTIDGSAA 856 + G A+ Sbjct: 629 GAEHSPGEAS 638 >UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXA6_HALOH Length = 796 Score = 828 bits (2138), Expect = 0.0, Method: Composition-based stats. Identities = 340/846 (40%), Positives = 533/846 (63%), Gaps = 53/846 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A +I + IE+++K SYL Y++SVI RALPDVRDGLKPVHRR+LYA LG +K + Sbjct: 1 MAEKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPH 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VG+V+GKYHPHGD++VYD +VRMAQ F+ RY L+DG GNFGSIDGDS AAMRYT Sbjct: 61 KKSARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL ++A ++MAD+ ++TVDFVDN+DG+ + P+++PTK+PNLL+NG+SGIAVGM+T+IP Sbjct: 121 EARLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EV++ + + + +E +M++IPGPDFPT A I G GI++AY+TG GK+ +R Sbjct: 181 PHNLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIVGLSGIKKAYKTGNGKITLR 240 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 AR ++E K ++ II+ EIPY +NK +L+E IAEL+ + +++ +S LRDESD++G+RI Sbjct: 241 ARTQIE--KKGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRI 298 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+E+K A +++LN LY T LQ ++ INM+AL QP++M+L I+ F+ RR+V+T Sbjct: 299 VVELKSGADPDIILNQLYKFTSLQTNYRINMLALDGKQPRVMDLITILKNFINFRRQVIT 358 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT ++L KA++R H+L+ L A+ +D +I +IRH+ + EA+ L Sbjct: 359 RRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEKLV-------- 410 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 +TE+QA+AIL +RLQKL G+E EKL E L + Sbjct: 411 --------------------------ITEKQAEAILRMRLQKLVGMEEEKLHQESAGLEE 444 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 QI +IL + + L +V+++EL ++ ++ DKR+TEI + I DLI +E V + Sbjct: 445 QIKYYKKILNNKNELDKVLKKELLDIKNKYADKRKTEIIEDEEKAIIEKTDLIKKEKVFL 504 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 T S++ +K SEY R GK D+I + T D +L F++ G VY+ Sbjct: 505 TFSYRQNIKRTTSSEY---ARAGK---------NDYIIDTMTGTTLDTLLFFTNTGDVYT 552 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + V+++PE + G I + L + ++I ++ + E + + +AT G VKKT+ Sbjct: 553 LPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVICLNEETKEKYITIATKQGMVKKTIGG 612 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 E+ + AIKL GDE++GV++T G E++L + + K +RF+E SV G NT G Sbjct: 613 EYQTTYSR-IKAIKLNKGDEVVGVEITDGNQEILLGTKKAKTIRFEEDSVSDTGRNTIGS 671 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 GI+L +GD+VVS + + ++++ ++ G GKR+ + EY ++R KG+ + + Sbjct: 672 IGIKLAKGDEVVSFNLVNNNTSVVSISKTGRGKRSPIEEYNPQNRNGKGLKTCGSSIY-- 729 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 841 + G + + D I++ T L +V++++ R ++ D+ + G++++ Sbjct: 730 KMAGVICANPDDYILITTGNEKLYTVKVNDLTETSRTGNMYEVVSLKNDDKITGVEKLPF 789 Query: 842 PVDEED 847 +E++ Sbjct: 790 APEEDN 795 >UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae RepID=D2QWS9_9PLAN Length = 938 Score = 827 bits (2136), Expect = 0.0, Method: Composition-based stats. Identities = 376/854 (44%), Positives = 516/854 (60%), Gaps = 22/854 (2%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D IE+ELK SYL YAMSVIV RALPDVRDGLKP RR+L AMN L Sbjct: 20 DDGTRFLDQPIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAP 79 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 K A++ GD G YHPHG+S +Y T+VRMAQ +++R++L+D QGNFGSI G AAMRY Sbjct: 80 RVKCAKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAAMRY 139 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL+ +A ++ DL +TVDFV YD + P V+P + PNLLVNG+ GIAVGMAT+I Sbjct: 140 TEARLSPVASMMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSI 199 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL EV + IDD ++++ L E I GPDFPT I GR GI YR GR + + Sbjct: 200 PPHNLGEVCEALVKVIDDPEVTLGELCEIIKGPDFPTGGTICGRAGIRRGYRDGRSTIVL 259 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGM 301 RA+ +E K R II+ EIPYQ + R++EKIAELV E+R++GIS + D SD K+ + Sbjct: 260 RAKTRIEEHKK-DRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPV 318 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 +VI++KRDA VVLN LY + LQ S I ++AL G+P+ ++LK+++ F+RHR V Sbjct: 319 HLVIDIKRDADPYVVLNQLYQFSPLQDSISIILLALVDGKPRELSLKELLEEFLRHRVTV 378 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 + RRT F L KAR R H +E L +ALANID II +IR + T AEAK L+ + Sbjct: 379 IRRRTQFLLSKARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQ 438 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 L G + E Y LT Q++AIL + L +L LE E+L E+ EL Sbjct: 439 RALGEEGFAMFQSE------RGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAEL 492 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDVV 540 L +IAE LRIL + + +I+EEL + ++GD+RRTEI+ D+NLEDLIT+E +V Sbjct: 493 LKEIAEYLRILADENIIRAMIKEELIAIAAKYGDERRTEISGEEIGDVNLEDLITEETMV 552 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V++SH+GY+K P S Y AQRRGGKG A+ ++ED I L VA+TH ++L F++ GRVY Sbjct: 553 VSISHRGYIKRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVY 612 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTV 659 KVY LPE +R +RGR IVNLL L + E+I + + +F+ +G + MAT G VKK+ Sbjct: 613 WQKVYDLPELSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSP 672 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 L +++R + G +AIKL + DE++ V +T DEV+L ++ G +RF ES R MG NT+ Sbjct: 673 LEDYSRPKKGGIIAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIRFSESDARPMGRNTS 732 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 GV+GI L GD +V ++V D +LT +NGYGKRT + + Sbjct: 733 GVKGISLASGDSLVGMVVADPDATLLTVCENGYGKRTNFGPNAEV---VGPPPADDDSID 789 Query: 780 NGLV--------VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE-D 830 G + + + D G + S R +G+ I+T + Sbjct: 790 TGSIDTSSAEAETVVAEPPAPAEEAAAEDEGDEEGSSGSRYRTQRRGGKGLRDIKTTTRN 849 Query: 831 ENVVGLQRVAEPVD 844 V+ + RV + + Sbjct: 850 GTVIAVARVDDTEE 863 >UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ27_9GAMM Length = 823 Score = 825 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 341/847 (40%), Positives = 510/847 (60%), Gaps = 47/847 (5%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 + I ++SS+ DYAMSVI RALPD RDGLKPVHRR+LY+M+ LG A+KKSAR Sbjct: 16 LELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHKKSAR 75 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VVGDV+GKYHPHGDSA YD+ VRMAQ +++R+ L+DGQGNFGSIDGD+AAAMRYTE+RL+ Sbjct: 76 VVGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDGDNAAAMRYTEMRLS 135 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 K+ L AD++K TVDF DN+DGTE+ P+V+P PNLLVNGS GIAVGMAT++PPHNL Sbjct: 136 KLGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVPPHNLR 195 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV 248 E + LA++D+ +I+ + +H+PGPDFPT I++ G +A TGRG V +R++ V Sbjct: 196 ETADAFLAWLDNPEITTREIAQHMPGPDFPTGGILHDLDGYIQALDTGRGAVKLRSQWTV 255 Query: 249 EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK 308 E D G +++ +IPY VNKA+L+E+IAELV+EK++EG++ LRDES+K G+RIV+E+K Sbjct: 256 E-DRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKGIRIVLEIK 314 Query: 309 RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 R+ E + L + TQL+ S N++AL P + ++D+ F HR EV+ RRT F Sbjct: 315 REFEAEAIAFQLVTMTQLETSVRYNIMALVGQTPMQLGVRDLFEHFRAHRIEVIQRRTQF 374 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 +L +A DR HILE L +AL +D I IR + EA+ L+ Sbjct: 375 DLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLI----------------- 417 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 L + QAQAILD++LQKLTGL+ + + DE+ L ++A+L Sbjct: 418 -----------------DLLGIDVTQAQAILDMKLQKLTGLQIQDIRDEHDRLTAEVADL 460 Query: 489 LRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGY 548 IL ++R +E++R EL + +Q ++R TEI + + ++ DLI +EDV++ + QGY Sbjct: 461 RDILARSERQVEIMRTELLDLCDQHANERCTEIDTSLSKVSAADLIPEEDVMLIGTQQGY 520 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 +K + Q RG KG+S + E+D + ++HD ++ + G+V+++K Y +P Sbjct: 521 LKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTFHAGHSHDTLIALTDSGQVHAIKAYDIP 580 Query: 609 EATRGARGRPIVNLLPLEQDERITAILPVTEFEE-GVKVFMATANGTVKKTVLTEFNR-L 666 + G +GR N+ + + A+L V E + + TA G VK+T L+ ++ Sbjct: 581 DTGLGNKGRHYRNVFEGVEG-NVVAMLTVDGLESVTHSLVIFTAQGLVKRTPLSAYSNAT 639 Query: 667 RTAGKVAIKLVDGDELIGVDLTSG--EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 724 R G I LV+GD ++ ++ + V++ + K +RF RA+G + GVR + Sbjct: 640 RRGGIQGISLVEGDSIVCARVSKDEPNESVIVAADNAKAIRFGMEEARAIGRTSRGVRAM 699 Query: 725 RLGEGDKVVSLIVPRGDG----AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 L E +VV+ + D ++ ++ G GK T +E+ +SR KGV S +R+ Sbjct: 700 NLSEDARVVAGDIIHADDLEKAHLMVVSEKGLGKATPASEFRLQSRGGKGVTSYTPNKRS 759 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G VV A + + +++ D G R S++ GR T G +IR + +V + V Sbjct: 760 GPVVAATVLFEGADVVLFNDQGGANRIAGSDVPHNGRATTGSAIIR---NGSVRNVLAVP 816 Query: 841 EPVDEED 847 PV+E+ Sbjct: 817 PPVEEDQ 823 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 94/248 (37%), Gaps = 12/248 (4%) Query: 628 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGV 685 D ++ + E + + T G +K+ + NR G+ + + + D + Sbjct: 494 DTSLSKVSAADLIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTF 553 Query: 686 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDK--VVSLIVPRGDGA 743 D ++ + G+V K + G G + EG + VV+++ G + Sbjct: 554 HAGHSHDTLIALTDSGQVHAIKAYDIPDTGLGNKGRHYRNVFEGVEGNVVAMLTVDGLES 613 Query: 744 I----LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD--CDQIMM 797 + + T G KRT ++ Y +R G+ I + E +V A D + +++ Sbjct: 614 VTHSLVIFTAQGLVKRTPLSAYSNATRRG-GIQGISLVE-GDSIVCARVSKDEPNESVIV 671 Query: 798 ITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE 857 D +R + E +GR ++GV + +ED VV + E+ + Sbjct: 672 AADNAKAIRFGMEEARAIGRTSRGVRAMNLSEDARVVAGDIIHADDLEKAHLMVVSEKGL 731 Query: 858 GDDEIAPE 865 G A E Sbjct: 732 GKATPASE 739 >UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae RepID=A7HL65_FERNB Length = 823 Score = 823 bits (2125), Expect = 0.0, Method: Composition-based stats. Identities = 363/848 (42%), Positives = 540/848 (63%), Gaps = 45/848 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 S+ + +E+EL SYL Y+MSVI+GRA+PDVRDGLKPV RR++Y+M LG NK Sbjct: 15 SNEQNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNK 74 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KK+AR+VG+V+GKYHPHGDS++Y+ +VRMAQP+ +RY LV+GQGNFGSID D AAMR Sbjct: 75 PFKKTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMR 134 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL KIA E++ D++K+TV +DN+DG+ + PDV+P K+PNLL+NG+SGIAVGMATN Sbjct: 135 YTEARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATN 194 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IP HNL +V++ +AYI + DIS+E L++ I GPDFPT II G+ GI E Y TG+G Sbjct: 195 IPTHNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGIIIGKSGIREMYITGKGGFT 254 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 IR +AE++ + K +++II+ EIPY ++KA LI++IA+ ++E+ + + LRDESDKDG+ Sbjct: 255 IRGKAEIKHEKK--KKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGL 311 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRRE 360 R+VIE D EV+LNNLY +T LQ F N + + QP++MNLK +I A+V+HR E Sbjct: 312 RVVIEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFE 371 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 VV +RT + ++ RAHI+E L A ID ++ +IR + +EA + LV Sbjct: 372 VVRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLV--------- 422 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++E+QA+A+LD+RL +LT LE + L EY++ Sbjct: 423 -------------------------DILQMSEEQAKAVLDMRLGRLTNLETQNLQQEYRD 457 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA---DINLEDLITQE 537 LL ++ + +L + D++ EVI EELE +++++GD R+TEIT + +DLI + Sbjct: 458 LLVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGDPRKTEITDLEETATKFDKKDLIPNK 517 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 D+V+TL+ +G++K + + QRR GKG A + E+D I +++ + H L F+S G Sbjct: 518 DIVITLTKKGFLKLMDIDAFRTQRRNGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLG 577 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 +VY ++ + E+ RG +G+PI + LE ER+ A++ +T++ +F T G VK+ Sbjct: 578 KVYEIENLDIEESNRGTKGKPINKYIKLENGERVLAMVDITDYVGE--LFFVTKKGVVKR 635 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRAMGC 716 T L +F + + G AI DGDEL+ V + E V++ + G +RF VR MG Sbjct: 636 TSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTMGR 695 Query: 717 NTTGVRGIRLGEGDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 N GVRGIRL EGD+V+S V +G ILT T+NGYGK T V++Y +SR G+ +I Sbjct: 696 NAAGVRGIRLREGDEVISSTVLENDNGYILTITENGYGKLTEVSDYRKQSRDGLGIKNIG 755 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 E+ G +VG V+ ++I++ T G ++ +VS+I R QGV ++ A+ + V Sbjct: 756 EIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLADGDIVAD 815 Query: 836 LQRVAEPV 843 + Sbjct: 816 FAVIGGEE 823 >UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EGN9_9CHLO Length = 963 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 319/891 (35%), Positives = 496/891 (55%), Gaps = 81/891 (9%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I + + E SYL YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG D K +K Sbjct: 106 DERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFK 165 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARVVG+V+GK+HPHGD +VYD +VRMAQ FS+ LVDG GNFGS+D D AAMRYTE Sbjct: 166 KCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYTE 225 Query: 125 IRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RL A + +AD+ + VDF + +DG++ P V+P ++PNLL+NGS+GIAVGMAT+IP Sbjct: 226 CRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSIP 285 Query: 184 PHNLTEVINGCLAYIDDED-ISIEGLMEHIPGPDFPTAAIINGRR-GIEEAYRTGRGKVY 241 PHNL EV N + + D + ++E L+E +P PDFPT II +R G +E YRTG+G V Sbjct: 286 PHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGVN 345 Query: 242 IRARAEVEVDAKTGRE-----TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 +R A VE + GR +++ IPYQ NKA L E+IA+LV + +EG+S +RDES Sbjct: 346 LRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDES 405 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 D+DGMR+V+E++R A VL+ LY++T+LQ +N+V L +PK+++L +I+ F+ Sbjct: 406 DRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLVGREPKVLSLMEIMREFLA 465 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R + V RR EL+KA R H++E A D ++ IR A A+ AL P Sbjct: 466 FRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKP-- 523 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 ++L+E+QA+A+L + L++LTGLEH+KL Sbjct: 524 -------------------------------FWLSEKQAEAVLAMPLRRLTGLEHDKLKT 552 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA----DINLED 532 E EL ++ +L +LG R++ + E + +R+ FG RRT+I ++ +N+ Sbjct: 553 EEAELTARVEDLTGLLGDRSRVIATVAREAKELRDTFGVDRRTDIDTDAQIHAKKMNVTL 612 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 + +V ++++GY+K + + Q R +G++ +++ D + ++ N D +L Sbjct: 613 DMLNSPSLVIMTNRGYIKRIDPAVFSKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLF 672 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT-----EFEEGVKVF 647 F+ RGRV++++ + +P+A+ A G P +L L + E ITA+LPV E + Sbjct: 673 FTDRGRVHAVRAFNIPQASTSALGTPFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLC 732 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 TA G +K+T +EF +R GK A+ L GD L VD+ D +++ +G V+ F Sbjct: 733 FVTARGLIKRTCASEFVGIRNNGKKALVLRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFD 792 Query: 708 ESSVRAMGCNTTGVRGIRLGEG---------------------------DKVVSLIVPRG 740 SVRA G GV+ + + Sbjct: 793 ADSVRAQGRAAAGVKAMAFKPDGLDDTSEDDDTSEALPANASAGDVEDDSEEDGEDEDAK 852 Query: 741 DGAILTATQNGYGKRTAVAEYPTK---SRATKGVISIKVTERNGLVVGAVQVDDCDQIMM 797 + + +G GKR +VA++ + R KG+ +K ++ L + + D+ + +++ Sbjct: 853 GPMLFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGSKLAALCLTGLDSDEHEHVII 912 Query: 798 ITDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847 + G + R V+ I GR +GV +++ ++ + V + + + +++ Sbjct: 913 GSQGGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTVRDITLLPAELGDDE 963 >UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZEN0_BREBN Length = 847 Score = 813 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 306/879 (34%), Positives = 485/879 (55%), Gaps = 51/879 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L+ +I + E + + DYA VI+ RA+PD RDGLKPV RR+LYAM GN +K Y Sbjct: 2 LSNQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPY 61 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VG V+G YHPHGDSA+Y+T+VRMAQ + +R +L+ G GNFGS+D D AAMRYT Sbjct: 62 RKSAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRYT 121 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ +A+EL+ D+EK+TV F+ NYD + + P V+P++ PNLLVNG++GIAVG AT+IP Sbjct: 122 ESRLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIP 181 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 HNL EVI+ +A + + +IS++ LM+H+ GPDFPT I+ G GI +A+ TGRG+ IR Sbjct: 182 THNLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGGIVQGLSGIRKAFETGRGQFIIR 241 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK----- 298 + VE + I+V EIPY+V K++L+ +I ELV E+++EG A+RDE+ + Sbjct: 242 GKTHVEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAEQ 301 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +RIV++++++A + +LN LY T LQ+ + NM +H G + M LK ++ A++ H+ Sbjct: 302 KKVRIVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVIHEGTIRQMGLKALLGAYIDHQ 361 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 +EVVT R ++L + + R HI+E L A + + I++ I + A+AK ++ Sbjct: 362 KEVVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEK----- 416 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 Y T+ QA AIL ++L LT L+ KL E Sbjct: 417 -----------------------------YGFTDNQADAILSIQLASLTRLDIVKLEKEL 447 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQ 536 L +I EL IL S +L++VI EL +++++ ++R TEI + I++ I Sbjct: 448 ATLAKEIEELKSILASEKKLIQVITGELNEIKKKYAEERLTEIQGEIEEIKIDIAMQINA 507 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ED +VTL+++GY+K +++ G +KE D + + NT L F+ Sbjct: 508 EDCIVTLTNEGYIKRTSPRSFKSV---GGTLETCGVKEGDRVRYFMETNTSHTALFFTQD 564 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G+ ++ V P+ G +VN++PLE+++RI V F++ + V+ + NG +K Sbjct: 565 GKYFATLVNAFPDDKWKDIGSALVNIIPLEKNQRIVGFTIVENFKQPLYVYHVSKNGLMK 624 Query: 657 KTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 KT L+E+ R++ VA KL G DE + V + ++ + +G +RF+ S V A G Sbjct: 625 KTALSEYETNRSSALVAAKLKGGDDEFMNVFVADEAGAILGATKDGMGIRFQRSEVSATG 684 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPR--GDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 ++GV+ I L GD V++++ A T G KRTA+ P ++RA KGV Sbjct: 685 RASSGVKAIALAPGDDVITMLPIEEVDSRAFSLLTAEGVVKRTAIGAIPLQARAGKGVQL 744 Query: 774 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 I+ + N + A+ +++ + T ++ + + G LI Sbjct: 745 IRKRKNNPHELVAMFLEET--VYAWTSQNEWTLVETEQVIVNEQGGIGRQLI--EGGVKA 800 Query: 834 VGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872 V + + + +D T GS + Sbjct: 801 VAFETILPTDEPKDEATAKGSGDGSGTAGQQKTSNVQAN 839 >UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyanobacteria RepID=B7KIH9_CYAP7 Length = 848 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 305/881 (34%), Positives = 492/881 (55%), Gaps = 92/881 (10%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I P + +E++ SYL+YAMSVIVGRALPDVRDG+KPVHRR++YAM+ LG ++ Y+K Sbjct: 12 QIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKC 71 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGD AVYD +VRM Q FS RY L+ G GNFGS+D D AAMRYTE R Sbjct: 72 ARVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131 Query: 127 LAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 LA I E ++ ++ + VDF +N+D +++ P V+P ++P LL+NG SGIAVGMATNIPPH Sbjct: 132 LAPIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPH 191 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+++G +A ID + E L E IPGPDFPT I GI+EAYRTG+G + ++ Sbjct: 192 NLGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTEGIKEAYRTGKGIIPVQGV 251 Query: 246 AEVEVDAKTGR-----ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 VE + GR I+V E+PYQVNK+ IEK+A+LV + R+EGI+ +RDESD+ G Sbjct: 252 THVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQG 311 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MR+VIE+KR+ + VL +LY QT LQ +FG+ ++AL +P ++L++++ F+ R + Sbjct: 312 MRVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNKPCQLSLRELLEEFLNFREQ 371 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 +TR+ EL +A+ R H+LE L +AL N+D +I ++R+AP AK Sbjct: 372 TLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEE------- 424 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ++E+QA +IL + +++LTGLE +KL EY++ Sbjct: 425 ---------------------------LTISEEQADSILAMPMRRLTGLEQQKLQTEYED 457 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED-------- 532 L +I +L +L LM+ ++++L ++ +FGD+RRT I +++ + + Sbjct: 458 LQQRINQLQVLLNDRIELMKSLKKDLRALKRKFGDERRTRIVSSAPTASKSEEKKGNPST 517 Query: 533 -----------------------------LITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 563 +D V+T++ QGY+ +Q +E+ + Sbjct: 518 PPQPSKTTTPSKSSEPKAKDSSSLSLFTPQPPPKDAVLTITEQGYIYWQSAAEFNSISSI 577 Query: 564 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLL 623 KG DF D ++ + +G+ Y + ++P + ++ ++NLL Sbjct: 578 KKGT--------DFPIYTQRIQQQDSLIVITDQGKAYPVSGSEIP--PQESQPCSLLNLL 627 Query: 624 P---LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGD 680 P + ++I + + + ++ + T G +K+ ++E ++ G IKL D D Sbjct: 628 PNSVQKNSQKIASYFLFPQQKNLSELILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDD 687 Query: 681 ELIGVDLTSGEDEVMLFSAEGKVVRFKE--SSVRAMGCNTTGVRGIRLGEGDKVVSLIVP 738 L + LTS EV + + G+V+R + MG N G + +RL G+ +V + P Sbjct: 688 RLGYLSLTSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQALRLRYGENIVGCVTP 747 Query: 739 RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI 798 + D +L TQ+GYGKR V G ++++ + + + G + +++++ Sbjct: 748 KIDDNLLLITQSGYGKRIPVNSLRITKLGEIGTMALQFSSKTDNLAGMILAKPKKEVILV 807 Query: 799 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 T+ + + + I G++ G +++ E+++ + + Sbjct: 808 TNQERRLIIPIDSVGIWGKDGVGDQVVKLKPQESILLVVAL 848 >UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobacteria RepID=Q114B8_TRIEI Length = 873 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 318/902 (35%), Positives = 490/902 (54%), Gaps = 100/902 (11%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 ++ L+ ++ ++ E++ SYL+YAMSVIVGRALPDVRDG KPVHRR++YAM+ LG + Sbjct: 5 LNLLSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPD 64 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + ++K ARVVGDV+GKYHPHGD AVYD +VRM Q FS RY L+DG GNFGSID D AAAM Sbjct: 65 RPFRKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAM 124 Query: 121 RYTEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 RYTE RLA I +E L+ + + VDF +N+DG+++ P V+P ++P LL+NGSSGIAVGMA Sbjct: 125 RYTESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMA 184 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 239 TN+PPHNL EV++G +A ID+ +IS + L E IPGPDFPT I GI + Y GRG Sbjct: 185 TNVPPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVSTDGIIDTYTKGRGS 244 Query: 240 VYIRARAEVEVD----AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 + +R A +E + + I+V E+P+QVNKA IEK A+LV ++EGI+ LRDE Sbjct: 245 IPMRGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDE 304 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFV 355 SD+ G+R+VIE+KR+A VVL++LY T L FG M+AL +GQP+ ++L+ ++ F+ Sbjct: 305 SDRSGIRVVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALVNGQPQQLSLRTLLQEFL 364 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW 415 R E +TR EL+ A+ R+HI+ L AL +D +I+++R+AP AK + Sbjct: 365 NFREETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQE--- 421 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 L+E QA AIL + +++LTGLE +KL Sbjct: 422 -------------------------------SLGLSENQADAILAMPMRRLTGLEKQKLE 450 Query: 476 DEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI- 534 +E+++L+ +I EL +LG +L++ +++EL ++ ++ D RRT I N +D Sbjct: 451 EEHEQLMGKIQELENLLGDRHQLLKALKKELRTLKRKYNDPRRTRIIDQIKLKNADDFAS 510 Query: 535 -------------------------------------------TQEDVVVTLSHQGYVKY 551 E VV+ SH+GYV+ Sbjct: 511 ISQQKKYLEAGNKEIDIKTKGRVIKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRR 570 Query: 552 QPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEAT 611 P +E + K EDF ++ A T ++ + G+ Y +KV +P A+ Sbjct: 571 IPAKGFEKYKIDKKSHITME-NSEDFTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSAS 629 Query: 612 RGA------RGRPIVNLLPLE--------QDERITAILPVTEFEEGVKVFMATANGTVKK 657 + +G P+V LLP + E I + E +E + M T NG +K+ Sbjct: 630 NRSTIRNENKGVPLVTLLPPSATKEITDARKEIIIGQFILNEAKENKDLIMLTQNGKIKR 689 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAMG 715 L++ + +R G IKL + DEL V L ++V+L ++ G+++R + + MG Sbjct: 690 LCLSDLSDMRNRGVTVIKLKEDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMG 749 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 G + RL + +++V + +L +Q+ YGK+ V +R G + Sbjct: 750 RAAQGSQATRLRKQEELVGCVTLDIGSNLLLVSQHSYGKQIPVTALRVANRGGIGQNVFQ 809 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 T ++ ++ G V + ++T G + + + ++ G L++ E ++ Sbjct: 810 FTRQDDILAGIVASSSNVLVQVLTTDGRVFGMIADRVKVDQQDDHGHRLLKLGAKEKIIK 869 Query: 836 LQ 837 + Sbjct: 870 VV 871 >UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI1_9ZZZZ Length = 898 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 340/927 (36%), Positives = 520/927 (56%), Gaps = 102/927 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A + +I +E++ SY++YAMSVI+GRALPDVRDGLKPVHRR+L+ M+ G+ +K Y Sbjct: 1 MAENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGY 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSAR VG+V+GKYHPHGD A+YDT+VRMAQ FSLRY L+DGQGNFGSIDGD AAMRYT Sbjct: 61 SKSARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL +++ ++ D+ K+T+D N+D TE P V+P ++PNLL+NGS GIAVGMAT IP Sbjct: 121 ESRLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIP 180 Query: 184 PHNLTEVINGCLAY------------IDDED-ISIEGLMEHIPGPDFPTAAIINGRRGIE 230 PHNL EV + +D+ I ME++ GPDFPT A I+G GI Sbjct: 181 PHNLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATIHGVDGIL 240 Query: 231 EAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGIS 290 + YRTG G+ IR+ EV+ D++ + ++VH IPYQV KA +++ IAELV++ ++GI Sbjct: 241 DMYRTGNGRFQIRSDVEVQEDSRG--KRLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIR 298 Query: 291 ALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI 350 +RDES K+G+R+VIE+K++A VLN LY ++LQ S+ NM+ + +G+P ++L+ I Sbjct: 299 DIRDESSKEGIRVVIEIKQNADPHAVLNQLYQSSRLQESYSANMMGILNGEPVQLDLRTI 358 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTAL 410 + +VRHR VV RRT FE KA RAHIL L A + IIE+ R + + + + L Sbjct: 359 LHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFEQYL 418 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 E + + +++QA+AI + RL +LT L Sbjct: 419 RG--------------------------DEKYPKIRRFDFSDKQAKAIAERRLYQLTKLN 452 Query: 471 HEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL 530 +++ DE K+L I + ILGS R + +I EL+ V ++ GD+RR+ I ++ Sbjct: 453 VQEVADELKKLKGAIKDYQNILGSRIRRLNIIISELDEVVDRHGDERRSRIDPMPLSMDR 512 Query: 531 EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHI 590 EDL+ ++ +V++L+ Y+++ P+ + Q RGGKG KEED +++ + D + Sbjct: 513 EDLVAEQAIVISLTRDNYIRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRL 572 Query: 591 LCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVT----EFEEGVK 645 L F+ GRVY ++ ++ P A+R RG I NLL + DE++ +ILP++ E EG Sbjct: 573 LIFTDMGRVYGLRAWETPSASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHY 632 Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLV--DGDELIGVDLTSGEDEVMLFSAEGKV 703 + ATANG +KK+ L+E+ ++ GK A++ + D L+ V + D V+L S+ G Sbjct: 633 LMFATANGRIKKSRLSEYVKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNA 692 Query: 704 VRFKESS-----------------VRAMGCNTTGVRGIRLGEGDKVVSLIVPRG-DGAIL 745 RF + VR G + GV G++L +GD+V+ +IV D ++L Sbjct: 693 CRFMPAQKKSRVDSNSGETITTHVVRVQGRVSQGVSGMKLRKGDQVIGMIVTDDFDTSVL 752 Query: 746 TATQNGYGKRTAVAE---------------------------YPTKSRATKGVISIKVTE 778 T ++ G KR+ + Y +R T+GV ++ + Sbjct: 753 TISRYGMAKRSRLGSGEMKPVLDDDSMPVLDEDGGLVQQRDGYRRTNRGTRGVRTMSL-R 811 Query: 779 RNGLVVGAVQVDD-CDQIMMITDAGTLVRTRVSEISIV-GRNTQGVILIRTAED------ 830 +V QV D DQ+ M+T G ++R + G+ T+G ++ Sbjct: 812 DGDHIVSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTKGTRIMELRNADRTGYV 871 Query: 831 ENVVGLQRVAEPVDEEDLDTIDGSAAE 857 + ++ + R+ + + E Sbjct: 872 DEIIFVARLPADLVDSSDAEGPSLEEE 898 >UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4N9_METEA Length = 894 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 343/894 (38%), Positives = 506/894 (56%), Gaps = 72/894 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + + EE++ SYL Y MS + RALPDVRDG+KPVHRR++++M ++ + KSA Sbjct: 18 VKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSA 77 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 +VVGDV+G+YHPHGD+A+YD +VRM Q +SLRY L+D QGNFGSID D AAMRYTE RL Sbjct: 78 KVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMRYTESRL 137 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 ++A L+ADL + VDF NYD + K P V+P + PNLLVNG GIAVGMATNIPPH+L Sbjct: 138 ERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHHL 197 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E I CL + + ++++ +M +PGPD PT +I+GR GI +A+ TGRG + + A Sbjct: 198 GETIEACLLRLANPAVTLDEIMRVMPGPDLPTGGVIHGRSGIRQAFATGRGAIRVSGVAS 257 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SDKDGMRIVIE 306 VE K GR I++ ++PY V KA +EK+AELV+EK++EGIS +RDE SDK G+RIVI+ Sbjct: 258 VEE-GKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVID 316 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLKDIIAAFVRHRREVVTRR 365 V++DA VVLN L +T + +NM L G+P+ M + ++ FV RREVV RR Sbjct: 317 VRKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVRRR 376 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T+ L K R+ H L A ID I+ LIR + EA+ AL+A + Sbjct: 377 TMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSG------ 430 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + A+ + + L++ Q +AIL++RL +LTGLE +K+ + +EL +I Sbjct: 431 ----EFAQLLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEI 486 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-INLEDLITQEDVVVTLS 544 L IL L V+R ELE ++ F D RRT I ++ D ++ EDL+ +D+VVT++ Sbjct: 487 GGHLEILNVKAVLDGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVVTVT 546 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GYVK L Y +++ ED + +V T +L F++RG ++ Sbjct: 547 AGGYVKRTDLPAYMGRQKAADEAV------EDPVATTIVCTTKTPLLFFTNRGLAHAEVA 600 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLT 661 ++LPEA RGR +VN L L+ +E + AI+ + + E + + T GT+++ + Sbjct: 601 HKLPEAAPNVRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDAS 660 Query: 662 EFNRLRTAGKVAIKLVDGD-----ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-G 715 +F R+ GKVAIKL D + +L+ V L S ED+V L S +G RF + +R M Sbjct: 661 DFARVNKGGKVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKS 720 Query: 716 CNTTGVRGIRLGEGDKVVSLIVP------------------------------------- 738 ++ GV GI LG DKV+S+ V Sbjct: 721 RDSVGVAGISLGRKDKVISVSVLRHFEATGTEREAYLAGGSARTKDETTGEPATFELPSD 780 Query: 739 ------RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 + IL+ T+NG+ KRT+ Y +R +GV + K+ +R G +V + V++ Sbjct: 781 RMLAMQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADRTGDLVALMPVEEQ 840 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 D +++ TDAG RT +E+ I+ R TQG + +V + ++A + Sbjct: 841 DVLVITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSVVKIAAEPAAK 894 >UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales RepID=C7XU56_9LACO Length = 843 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 305/875 (34%), Positives = 477/875 (54%), Gaps = 60/875 (6%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +I + +E+ + + Y+ S+I RALPD+RDGLKPV RR+L+AMN GN ++K ++ Sbjct: 3 DNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSA+ VG+V+G +HPHGDS++Y+ +VR++Q + LR L++ GN GS+DGD AAAMRYTE Sbjct: 63 KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 122 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL+KIA ++ D++K+TV+ N+D TEK P V+P +IPNL VNG++GI+ G AT IPP Sbjct: 123 ARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATEIPP 182 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+I + + + ++ LM ++PGPDFPT II G GI +AY TGRG+V +RA Sbjct: 183 HNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGGIIQGVDGIRKAYETGRGRVILRA 242 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 +E + GR+ IIV EIPY VNKA+L+++I +L K+VEGIS RDE+D+ G+RI Sbjct: 243 NTTIEE-LRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSGLRIA 301 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+KR+A +LN L T LQ+++ NMVA+ + +P + LK + +++ ++E++TR Sbjct: 302 IELKRNADANGILNYLLKNTDLQINYNFNMVAIDNQRPMRVGLKHYLKSYLAFQQEIITR 361 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT F L KA+ R HI+E L AL+ +D +I+ IR + +A LV Sbjct: 362 RTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLV------------- 408 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Y T+ QA+AI+ L+L +LT + L DE + L D Sbjct: 409 ---------------------NEYQFTQPQAEAIVALQLYRLTNTDVTDLRDEQQRLNDS 447 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVVT 542 IAE +IL + L V+ +E + + +QFG R+T+I + ++ + + E+VVV Sbjct: 448 IAEYNKILNDQNELNRVLVKEFKAIDKQFGSDRKTQIEKHIQKLTVDTKVTVPDEEVVVL 507 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSM 602 +SH GY+K L ++A G ++E+D+ + A+T +H+ F+++G V Sbjct: 508 VSHAGYIKRTSLRSFKASVLEENG-----LREDDYPLLIQRASTLNHLFMFTNQGHVIYR 562 Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 V++L +A G I + L DE I L E + +T++G VK+T + + Sbjct: 563 PVHELTDAKWKETGEHISQSIGLADDEEIIKALIFENLELPGTMIFSTSDGQVKQTTIQD 622 Query: 663 F---NRLRTAGKVAIKLVDGD-ELIGVDLTSGEDE---VMLFSAEGKVVRFKESSVRAMG 715 +R ++ V +KL D +I + + + + S G +RF + V G Sbjct: 623 LKPGSRYKSRASVVMKLKDASARMINAEYYEPQAQNVSLTAISKHGYGLRFDVAEVPTQG 682 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 T GVR I L + D++V+L+ D + TQ G K E SRA +GV+ + Sbjct: 683 TRTAGVRAINLKDDDELVNLVQTADDDRLAIMTQRGAFKEMRANELEVGSRARRGVLVLH 742 Query: 776 VTERNGLVVGAVQVDDCDQ---IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN 832 +++ + D +ITD V + + + G +I T Sbjct: 743 KLKKHPHEIVDFLAYPADYHGAFEVITDRPEFQDILVDDHHLGTAKSNGTFVIDTDTQGT 802 Query: 833 VVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVD 867 V L+R + + A EG D + D Sbjct: 803 PVTLRR--------KITVMANPAKEGSDNKNTQTD 829 >UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria RepID=PARC_STAES Length = 800 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 308/837 (36%), Positives = 487/837 (58%), Gaps = 44/837 (5%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 ++ I +++E+ + + Y+ +I RALPDVRDGLKPV RR+L+AM GN ++K + Sbjct: 1 MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSA+ VGDVIG+YHPHGDS+VYD +VR++Q + LR++L++ GN GSID D AAMRYT Sbjct: 61 RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E +L++++ EL+ D+ KETV F+ NYD T P V+P + PNLL+NGS+GI+ G AT+IP Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EVI G L YID DI+I LM++I GPDFPT II G GI++AY TG+GKV +R Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVR 240 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 +R + E ++GR+ +IV EIPY+VNK+ L++KI EL +K+V+GI +RDE+D+ G+RI Sbjct: 241 SRVD-EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRI 299 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 IE+K+DA E + N LY + LQ+S+ NMVA+ G+PK+M L++II +++ H+ EVVT Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVT 359 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RT ++L +A R HI+E L AL+ +D +I LIR++ +AK LVA Sbjct: 360 NRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE---------- 409 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 Y TE QA+AI+ L+L +LT + E L E++EL Sbjct: 410 ------------------------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEA 445 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 I EL IL + + L+ VI++EL ++++F R + I A ++ I+ E ++ E+V++ Sbjct: 446 LIKELRNILDNHEALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVIL 505 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 +L+ GY+K + A G + +K+ D + + NT D +L F+++GR Sbjct: 506 SLTQHGYIKRTSTRSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLF 560 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + V++L + G+ I ++P+++DE + + +F+ MAT NG +KK+ + Sbjct: 561 IPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIKKSSAS 620 Query: 662 EFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +F R + +K+ D DELI V + + + + +G + + + + G G Sbjct: 621 QFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELSDTGLRAAG 680 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+ I L + D VV +I+ TQ G KR RA +G+ +K ++ Sbjct: 681 VKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKKK 740 Query: 781 -GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 836 +V V + ++ + ++ + + T G +I T + V + Sbjct: 741 PHRIVAGAVVKENHTKYIVFSQHHEEYGNIDDVHLSEQYTNGSFIIDTDDFGEVESM 797 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 99/209 (47%), Gaps = 11/209 (5%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 + T +G +K+T FN +G I L DGD L+ + + +D V++F+ + Sbjct: 499 PSEEVILSLTQHGYIKRTSTRSFNA---SGVTEIGLKDGDRLLKHESVNTQDTVLVFTNK 555 Query: 701 GKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSL---IVPRGDGAILTATQNGYGK 754 G+ + + + G + + + E ++VV++ + + + AT+NG K Sbjct: 556 GRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIK 615 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 +++ +++ +R K +I++KV ++ ++ V+++ I ++T G + +E+S Sbjct: 616 KSSASQFK-TTRFNKPLINMKVKDK-DELINVVRLESDQLITVLTHKGMSLTYSTNELSD 673 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAEPV 843 G GV I +++ VV + V + Sbjct: 674 TGLRAAGVKSINLKDEDYVVMTEDVNDSD 702 >UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S991_OSTLU Length = 897 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 311/900 (34%), Positives = 478/900 (53%), Gaps = 94/900 (10%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +I V + E K+SYL YAMSVIVGRALPD RDGLKPVHRR+LY M+ LG +K ++ Sbjct: 32 EEKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHR 91 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARVVGDV+GKYHPHGD +VY+ +VR+AQ FS+ LVDG GNFGS+D D AAMRYTE Sbjct: 92 KCARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYTE 151 Query: 125 IRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RL K+A + L+AD+ E V+F + +DG++ P+V+P ++PNLL+NGSSGIAV +ATN+ Sbjct: 152 CRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMA 211 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL E ++ A + D S++ LM +P PDFPT ++ + G++E Y TG+G V +R Sbjct: 212 PHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGGVVTNKSGMKEIYETGKGGVTLR 271 Query: 244 ARAEVEVDAK----TGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 RA +E + ++ +++ EIPYQ NKARL+E+IA+ V + ++GIS +RDESD+D Sbjct: 272 GRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRD 331 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMR+VIE+KR VL LY++T+L+V F +N VAL +P +M L+ I+ F++ R Sbjct: 332 GMRVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNKPTVMPLRQILDEFIKFRV 391 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 + + RRT F L KA+DR H++E ++ LA+ D ++++IR + A L + Sbjct: 392 DTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESH----- 446 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 L++ QA +IL + L++LTGLE +KL E K Sbjct: 447 -----------------------------GLSDIQADSILAMPLRRLTGLEADKLDAELK 477 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 EL +QIA +L + ++++V+ +E +E F RRT + + +ED +D Sbjct: 478 ELNEQIAHFQGLLSNKSKVIDVLVQEAMEAKEAFARPRRTSVEQIESLSGVEDDSPPKDN 537 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 ++TLS +GYVK + AQ RG +GK ++++ D + + + D IL FS RGRV Sbjct: 538 ILTLSERGYVKRICPKNFGAQNRGTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRV 597 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPL--EQDERITAILPVT----EFEEGVKVFMATANG 653 + +P++ G P +LL ++++ +TA+L E + V M T+ G Sbjct: 598 QKLSAKAIPQSELNTIGVPATSLLNTFAKRNQNVTAMLSTNMKQGEVADDQVVVMLTSQG 657 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSA----EGKVVRFKES 709 K +V + + L GK I L GD L V D + + +G ++ + Sbjct: 658 --KVSVASAASMLGHKGKKVITLDKGDRLQQVMFARTSDHLFITGTGKAGKGLILHCRVG 715 Query: 710 SVRAMGCNTTGVRGIRLGEGDKV--------------------------VSLIVPRGD-- 741 R + + GI+ KV V + + G+ Sbjct: 716 DFRVVKSACRPISGIKTMGEKKVAEAVVEDAGDDEDDDEDDGELLPPKTVGMAIVPGERM 775 Query: 742 --------GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD-- 791 IL T+ G GK A Y R GV+ +K + + + + + D Sbjct: 776 VSASEEFGPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKKGDDDALATITLVDRI 835 Query: 792 ----CDQIMMITDAGTLVRTRVSEISIVGRN-TQGVILIRTAEDENVVGLQRVAEPVDEE 846 D++++ T G R V+++ G +I+ + + + V E Sbjct: 836 GDDVTDEVLLSTTGGISNRIAVNDLPKRSDPLALGAAIIKLDATDALKSANLLPSEVASE 895 >UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZH8_ERYRH Length = 822 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 290/856 (33%), Positives = 474/856 (55%), Gaps = 53/856 (6%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + IE+ + + Y+ +I RALPDVRDGLKPV RR+LYAM N ++K Y+K Sbjct: 4 DSLIKLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYRK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SA+ VG VIG YHPHGDS+VY+ +VRM+Q + + L+D QGN GSID D AAAMRYTE Sbjct: 64 SAKTVGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRYTEA 123 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R++K++ +L+ ++++E V FV N+D P V+P + PNLLVNGS+GIA G ATNIPP Sbjct: 124 RISKLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPPF 183 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+++ + + + + S+E +M + GPDFPT AII G+ GIE+ R G+G++ +RA+ Sbjct: 184 NLNEIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGAIIQGQEGIEDIIRKGKGRIVVRAK 243 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEG---ISALRDESDKDGMR 302 AE+ + I++ E+PY+V K+ ++ KI EL K EG + +RDESD+ G+R Sbjct: 244 AEI--VENKSMKQIVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTGLR 301 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IVI+ KRDA E +LN Y T+LQV + NMVA+ +PK+ L +++ A+++ R+EVV Sbjct: 302 IVIDCKRDANVESILNLFYKYTELQVYYNANMVAIVDQRPKVCGLLEVLDAYLKFRQEVV 361 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 R+ + + R HILE L A +N+D II +IR + +E++ ++A Sbjct: 362 LNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAE--------- 412 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + TE QA AI+DL+L +L+ + L DE+ +L Sbjct: 413 -------------------------FGFTEAQATAIVDLQLYRLSSTDINALRDEFAKLA 447 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA--DINLEDLITQEDVV 540 +++ L ++ + D L +I +E ++E F RR+ I A + +++ LIT E V+ Sbjct: 448 NELEYLDLVINNIDMLNNMIVKEFMEIKEAFDTPRRSVIEAEISELEVDHLSLITNEAVM 507 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 VT+S GY+K L Y G K + +ED T D+++ +SRGR Sbjct: 508 VTVSRDGYLKKVSLRSY-----GSSQKDVIALMDEDMPVFSSEVETTDYLVFVTSRGRYG 562 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 + V+++ EA G I + + +E+I ++ + F+ + +TA+G +KKT + Sbjct: 563 MILVHEIDEARWRDTGSHINQYMKCDPNEKIISVFTLKSFDTYRFIVTSTASGMIKKTAI 622 Query: 661 TEFNRLRTAGKV-AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 +E RT +KL DEL+G +TS ++ ++L S EG+ +R + + +G Sbjct: 623 SELEVKRTNRLYDVMKLGKHDELVGAVITSNDEHLLLVSKEGQCMRLDLAEINPIGLRAK 682 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 GV G++L D+VVS + + ++ + KR + +RAT+G +K+ + Sbjct: 683 GVIGMKLKLNDRVVSTMGLSDESEVVFVSDRFQMKRIKAQDIAINNRATQGTSIVKMVKS 742 Query: 780 NGLVVGAVQVDD-CDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN---VVG 835 N + + V + D I++ D +++ + ++ I+ + + + +V Sbjct: 743 NPHCLAELFVGNIQDHILIYNDHTSII--PIKDVPIMSADATFSTVTTEKDFSILRPLVH 800 Query: 836 LQRVAEPVDEEDLDTI 851 + +VA P E+ T Sbjct: 801 VVKVAIPKVEDKSVTE 816 >UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q2ST76_MYCCT Length = 795 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 355/831 (42%), Positives = 514/831 (61%), Gaps = 43/831 (5%) Query: 26 MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 85 MSVIV RALPD++DGLKPVHRR++YAMN LG +K +KKSAR+VG+VIGKYHPHGDSAV Sbjct: 1 MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60 Query: 86 YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145 Y+T+VRMAQ FS RY L+DG GNFGSIDGD AAAMRYTE RLAKI++ L+ D++ +TV F Sbjct: 61 YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120 Query: 146 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISI 205 +DNYD +E P + +PNLLVNG+ GIAVGMAT+IPPHNL EV++ AYID+ DI+I Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180 Query: 206 EGLME-HIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEI 264 + +++ HI GPDFPT A++ + E Y+TGRG V IRA+ + E + K R +V EI Sbjct: 181 DEILDNHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENKKHDR--FVVTEI 238 Query: 265 PYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQT 324 PYQ NKA++IEKIAELVK+K +EGI +RDES+ +G+RI+IE+K+DA +VVL+ LY T Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYT 298 Query: 325 QLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALA 384 LQ SF IN++ L++ P +++LK II +V + V+ +R+IFE K R HILEAL Sbjct: 299 ALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEALH 358 Query: 385 VALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVR 444 +AL N+D +I +I+++ T EAK L Sbjct: 359 IALDNVDDVINIIKNSKTSEEAKIQL---------------------------------- 384 Query: 445 DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 504 Y E+Q +AILD+RLQ+L GLE +K+ E + +++ L ++ + + V++ Sbjct: 385 TNKYNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKN 444 Query: 505 ELELVREQFGDKRRTE-ITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 563 +L + ++FGD RRTE I +I E+LI ++ LS +GY++ E+ Q+RG Sbjct: 445 QLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRG 504 Query: 564 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLL 623 G+G S + D ID + D +L F++ G+VY K+Y + +R ARG PIVN L Sbjct: 505 GRGVS-VNAEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFL 563 Query: 624 P-LEQDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDE 681 L +++ITAILP+ +E + T G +K+T ++EF + GK AI L + D+ Sbjct: 564 NDLTSEDKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQ 623 Query: 682 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 L+ V T+G+D + + + GKV+R KES V +GVR ++L D VV I Sbjct: 624 LVSVFATTGQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLETNDVVVGAISSFKL 683 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 I T + G K+T + +Y R KG+ + + +R G + + D I++I+ Sbjct: 684 THITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSD 743 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENV--VGLQRVAEPVDEEDLDT 850 G L++T+VS I + RN GV IR A+++ + + L+ ++ ED + Sbjct: 744 GNLIKTKVSNIPSLSRNASGVKAIRLADNQEINAITLEYRKHGLENEDFEE 794 >UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicutes RepID=PARC_STRPN Length = 823 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 297/864 (34%), Positives = 475/864 (54%), Gaps = 65/864 (7%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I +++E+ + + Y+ +I RALPD+RDGLKPV RR+LY+MN N ++K+Y+K Sbjct: 2 SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SA+ VG+++G +HPHGDS++YD +VRM+Q + R +LV+ GN GS+DGD AAMRYTE Sbjct: 62 SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL++IA L+ D+EK+TV F N+D TEK P V+P PNLLVNGS+GI+ G AT+IPPH Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL EVI+ + ID I+ LME +PGPDFPT AII GR I++AY TG+G+V +R++ Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E+E K G+E I++ EIPY++NKA L++KI ++ +V GI+ +RDESD+DG+RI I Sbjct: 242 TEIE-KLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+K+DA E+VLN L+ T LQ+++ NMVA+ + P+ + + I+++++ HRREV+ R Sbjct: 301 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + F+ KA R HI+E L ++ +D +I LIR + A+AK L Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLK-------------- 406 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 Y TE+QA+AI+ L+L +LT + L +E EL ++I Sbjct: 407 --------------------VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKI 446 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQEDVVVTL 543 A L I+G + ++++EL V+++F R + + + +I+ LI +ED V++ Sbjct: 447 AMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSV 506 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + GY+K + A GK +++D + + A T H+L F+S G V Sbjct: 507 TKAGYIKRTSPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRP 561 Query: 604 VYQLPEATRGARGRPIVNLL-PLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 662 +++L + G + + E +E I + + +F++ F T G +K+ E Sbjct: 562 IHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKE 621 Query: 663 FNR---LRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 F R+ KL D D+++ V D+V+L S G +RF V +G Sbjct: 622 FTPWRTYRSKSVKYAKLKDDTDQIVAVAPIK-LDDVVLVSQNGYALRFNIEEVPVVGAKA 680 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GV+ + L E D + S + L TQ G KR ++ E SRA +G+ ++ + Sbjct: 681 AGVKAMNLKEDDVLQSGFICNTSSFYL-LTQRGSLKRVSIEEILATSRAKRGLQVLRELK 739 Query: 779 RNGLVVGAVQV----------------DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGV 822 V + +++ ++ GT+ +R+ ++++ R + G Sbjct: 740 NKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGS 799 Query: 823 ILIRTAEDENVVGLQRVAEPVDEE 846 + T DE V +++ Sbjct: 800 FISDTISDEEVFDAYLQEVVTEDK 823 >UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q98RX7_GUITH Length = 877 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 292/852 (34%), Positives = 502/852 (58%), Gaps = 48/852 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 ++ I ++ E+ SY++YA+SVI GRALPD+RDGLKPVHRR+L+AM L Sbjct: 59 TNDKTRIINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEA 118 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 Y+K ARVVG+V+GKYHPHGD+AVYD++VRM+Q FS+R +L+ G GNFGSID D AAMR Sbjct: 119 PYRKCARVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMR 178 Query: 122 YTEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 YTE +L+ ++ + L+ +L+ +TV++V N+DG+ P +MP+ IP++L+NGSSGIAVGMAT Sbjct: 179 YTECKLSNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMAT 238 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +IPPHNL E++ CLA ID+ +I+ + L++++P PDFPT +I G ++ Y G + Sbjct: 239 SIPPHNLGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLIIGNNSCKDLYEKGISSI 298 Query: 241 YIRARAEVEVD---AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 +R + VE K + +I+ EIP+Q+NK+ LI K+A+LV K ++GIS +RDESD Sbjct: 299 ILRGKINVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESD 358 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 + G+RIVIE+KRD ++ + ++ LQ++F M+ + QP ++NLK+I++ F+ Sbjct: 359 RKGIRIVIEIKRDYDPIKIVKIILKKSSLQITFSSYMLCIVDKQPILVNLKEILSLFLHF 418 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 RR+++ + FEL+ + +IL+ ++++L ID IE I+ + EAK L+ Sbjct: 419 RRKIIRKNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILME----- 473 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + L+++Q++AIL+L+L++LT LE +K+ ++ Sbjct: 474 ------------------------------FGLSQEQSEAILNLQLRRLTKLESKKIDND 503 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLIT 535 ++ + EL IL S + +I+ +++ + E +G R+T + + + I + I Sbjct: 504 FEITKSSLNELKCILSSNILIDGIIKNQIKNISEIYGFPRKTLLINSINENIIEELETIE 563 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 + V+ ++ Y+K L +E+Q RG KGK I + D I N D ++ SS Sbjct: 564 NYESVIMITQ-YYIKKMFLESFESQTRGTKGKRGLIISDGDEISHFFSCNNRDDLIAISS 622 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 G Y +KV ++P + R ++G PI+++L ++ +I++I+ + E + + T G + Sbjct: 623 GGIAYKIKVSRIPISKRNSKGTPILSILKGLENNQISSIIATSNCETEKFLVLLTQKGLI 682 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKES--SVRA 713 K+T ++ FN + + G + + L + D L V +D V++ + +GK++RF S +++ Sbjct: 683 KRTSISNFNNISSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKS 742 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGD---GAILTATQNGYGKRTAVAEYPTKSRATKG 770 G + G++ I L D + + I+ T+ GYGKR V E + R KG Sbjct: 743 TGRTSKGIKSIDLDSNDIISDFDIIPSQAITNFIILLTEMGYGKRIKVTELKIQKRGKKG 802 Query: 771 VISIKVTER-NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAE 829 + I + E N ++ + + ++I++ T G +V+ ++S+I++ +N++G+I+ R E Sbjct: 803 IKVISLRENVNDYLISSRFCIENEEILISTSYGNVVKQKISDIAVQKKNSKGIIIQRLTE 862 Query: 830 DENVVGLQRVAE 841 + V + + Sbjct: 863 GDKVSKISIINS 874 >UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K4_SPHTD Length = 813 Score = 764 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 301/849 (35%), Positives = 472/849 (55%), Gaps = 59/849 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 I + +++ YA++V+ RALPD RDGLKPV RR+L+ M G+ N+ Sbjct: 10 HEETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPT 69 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSA VVGDV+ YHPHGDSAVYD VRMAQ F++RY L++GQGNFGSIDGD+AAA RYT Sbjct: 70 VKSASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDGDAAAAYRYT 129 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDG--TEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 E+RL+ I L+ D+E+ETV F Y P +P +IP + N SSGIAVG++T+ Sbjct: 130 EMRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPPI-CNPSSGIAVGLSTD 188 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL E I +A +D+ +++++ LM+ +PGPDFPT I G GI +G+G++ Sbjct: 189 IPPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRIIGTDGIRAYLESGKGRLV 248 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD-G 300 IR +E + + + ++V EIP ++++RL+ I V + +V G++ +R+ESD + G Sbjct: 249 IRGEVRLEEELR--QRNLVVTEIPP-ISRSRLVRSIINAVNDGKVTGVTDVRNESDDEKG 305 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH------GQPKIMNLKDIIAAF 354 RIV+E++R A EVVLN LY T LQ + +NMV L QP+ + D++ + Sbjct: 306 TRIVVELERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLLRYW 365 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 RH+ +V+TRR ++LRKA++R H++E L + A+ D I+ + + A AK + Sbjct: 366 NRHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEKIKVK- 424 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 Y LT+ QA I ++ L ++T L+ K Sbjct: 425 ---------------------------------YNLTDIQADVIANMTLAQVTRLDAAKY 451 Query: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLED 532 +E KEL +I EL +L S + + +++EEL + ++ GD RRT I + ++ Sbjct: 452 AEEKKELTKRIKELQALLASEAKKVALLKEELTAIAQEHGDDRRTRIDREGQEEIASVAS 511 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 LI + +++ S G VK P + ++ R G R + + ++ A+T D++L Sbjct: 512 LIEERPILIVASQSGRVKALPENAFKRARAG-------RTARGEGLAAIVPASTLDYLLV 564 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 + GRVY + +++P TR + G P + L+ DE + ILPV E E V TAN Sbjct: 565 LTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPDEALATILPVNELTEDRYVVWFTAN 624 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 712 G VKKT L E+ + +AG ++L+ D ++ L+ E ++ ++ G+ +RF + VR Sbjct: 625 GKVKKTSLAEYRTITSAGLNDLRLLGDDRVVAATLSESGGEYLVIASNGQALRFADDEVR 684 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRG--DGAILTATQNGYGKRTAVAEYPTKSRATKG 770 A G + GV I L G +VV+ + DG +L T G GKRTA+ ++P + RAT G Sbjct: 685 ATGRDGQGVNAIALKAGAEVVTALAIPPKSDGDVLVVTAQGMGKRTALKDFPARRRATAG 744 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830 V +I + + + GA V D +++ G ++ V ++ GR T+G L+ A++ Sbjct: 745 VAAITLA-KGDRIAGAALVTPDDDVVLGAAGGQALQVTVKDLRRQGRATKGSRLLEVAKN 803 Query: 831 ENVVGLQRV 839 ++V + RV Sbjct: 804 DHVATIARV 812 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 99/248 (39%), Gaps = 16/248 (6%) Query: 613 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 G + E E I ++ + E + +A+ +G VK F R R AG+ Sbjct: 488 QEHGDDRRTRIDREGQEEIASVASLIEERP--ILIVASQSGRVKALPENAFKRAR-AGRT 544 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLGEG 729 A G+ L + S D +++ + G+V + V A ++G + L Sbjct: 545 A----RGEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPD 600 Query: 730 DKVVSLIVPRG---DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 + + +++ D ++ T NG K+T++AEY T + + G+ +++ + VV A Sbjct: 601 EALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTIT--SAGLNDLRLLG-DDRVVAA 657 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846 + + ++I G +R E+ GR+ QGV I VV + D + Sbjct: 658 TLSESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIPPKSDGD 717 Query: 847 DLDTIDGS 854 L Sbjct: 718 VLVVTAQG 725 >UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID=Q5MZD4_SYNP6 Length = 858 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 297/892 (33%), Positives = 459/892 (51%), Gaps = 98/892 (10%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 + A I P + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+LYAM+ LG ++ Sbjct: 8 NGADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRP 67 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 ++KSARVVGDV+GKYHPHGD AVYD +VR+ Q FS RY L+ G GNFGSID D AAMRY Sbjct: 68 FRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRY 127 Query: 123 TEIRLAKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 TE RLA ++H L+ ++ +ETVDFV N+D +++ P V+P ++P LL+NG SGIAVGMATN Sbjct: 128 TETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATN 187 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL E+++ +A ID +S L+ ++PGPDFPT + G +GI +AY GRG + Sbjct: 188 IPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILDAYLEGRGSIP 247 Query: 242 IRARAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 +R A +E + R IIV E+PYQV+KA IEK+A+LV + +++GI+ +RDESD Sbjct: 248 VRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESD 307 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 ++GMR+VIE++RDA + VL LY +T LQ +FG ++A+ GQP+ ++LK ++ F+ Sbjct: 308 REGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSLKQLLEQFLSF 367 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R + RR EL + R ILE L +L+++D +IE++R +P A+ L Sbjct: 368 REGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQ------ 421 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + L E+QA A+L + ++++T LE E+L E Sbjct: 422 ----------------------------VHFDLNERQADAVLSMPMRRITSLEQEQLQQE 453 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI---------------- 521 L +Q A L +LG L++ ++++L ++ +FG RT + Sbjct: 454 AANLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFGSPHRTRLPEIPPEAIAAPRQVTA 513 Query: 522 -----------------------------TANSADINLEDLITQEDVVVTLSHQGYVKYQ 552 +SA + QE + LS + ++ Sbjct: 514 PVAPISAPTPATAGPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAA 573 Query: 553 PLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 612 +E E + G DF L A+ +L ++ GR Y + ++ Sbjct: 574 SATELEPWLKAKSGAQERT----DFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPG-- 627 Query: 613 GARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK 671 PI NLLP Q I A L + E + ++ G VK+ LTE + G Sbjct: 628 -----PIANLLPTGRQSTAIAATLLLPLASEERSLLPLSSQGRVKRLALTELAEISNRGL 682 Query: 672 VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG-VRGIRLGEGD 730 +KL + + + L + + EV+L S+ G+++R S + + G R +RL EG+ Sbjct: 683 QLLKLAEEEIIQAACLCAPQQEVLLGSSGGRLLRLSLSELPLASRISRGQPRLLRLREGE 742 Query: 731 KVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD 790 + + + +L + G KR + G + + T++ ++ + Sbjct: 743 QPLGCLSLPSGQDLLLVSTLGLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIALLPAP 802 Query: 791 DCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEP 842 + +D R +S I++ G + +G L E + + Sbjct: 803 SQGLAIFASDQRLWQR-SISTIAVTGTDAEGQTLFNLRSTETLQSATTLEGD 853 >UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipelotrichaceae RepID=D2MM14_9FIRM Length = 830 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 277/832 (33%), Positives = 447/832 (53%), Gaps = 50/832 (6%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +E+ + + + YA +I RALPDVRDGLKPV RR+LYAM GN +K Y+KS Sbjct: 12 RYLNQRLEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKS 71 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A+ VG VIG YHPHGDS+VYD +VRM+Q + +R +D GN GSID D AAAMRYTE R Sbjct: 72 AKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPAAAMRYTEAR 131 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 LAK+ + DL+K+TV+ N+D T+ P V+P P +LVNG++GIA G ATN+PPHN Sbjct: 132 LAKVTQVMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHN 191 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 + EVI+ + I + + S+ +M+ +PGPDFPT I+ G GI EA+ TG+G++ +RA+ Sbjct: 192 INEVIDATIYRIQNAECSLNDVMDILPGPDFPTGGIVQGEEGIREAFTTGKGRIVVRAKT 251 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 E+ + + I++ EIPY+V K L++K+ E+ + V+G+ +RDESD++G+RIVI+ Sbjct: 252 EI--IQEKNLQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVID 309 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 V++D ++L + T LQV + N VA+ +P + L ++ AF+ R+EVV RR+ Sbjct: 310 VRKDVDANLILQYFFKNTDLQVYYNYNNVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRS 369 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 FEL K R HI+E L A++ +D +I +IR + A+AK L+ N Sbjct: 370 RFELNKMEARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIEN------------- 416 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 + E QA+AI+ LRL +L+ + L +E+ +L++QI Sbjct: 417 ---------------------FGFDEVQAEAIVTLRLYRLSNTDIVSLRNEFAQLVNQIE 455 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL--EDLITQEDVVVTLS 544 E IL + L ++ +EL V+E +GD RRT+I A +IN+ E +I E V++T+S Sbjct: 456 ETKSILENESVLRHLMVQELRQVKENYGDARRTKIEAKIDEINISKEAMIPSEQVMITVS 515 Query: 545 HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV 604 GY+K L + A R G +K D + NT D +L F+S+G + V Sbjct: 516 KDGYLKRVSLRSFNAVRDQETG-----LKTGDQLIGQREVNTLDTLLLFTSKGNYAMVPV 570 Query: 605 YQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 664 +Q+ + G + L+ ++ +E++ + + V F+ + + T +KKT L+++ Sbjct: 571 WQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSYAWITLVTKGNKIKKTKLSDWK 630 Query: 665 RLRTAGK-VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 RT+ AI L + DE+ +T EV++ + +G +R + + + + GV+ Sbjct: 631 VERTSRLFKAINLEEKDEVCAAFMTYQSQEVLVVTKDGYALRMSQDQIPEV-KASKGVQA 689 Query: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-KGVISIKVTERNG- 781 +++ D+V +L T KR + + RA G K + N Sbjct: 690 MKVAFEDEVAFATSVYSSDNLLFLTDTLQAKRIHLEDLRLSGRAKNMGERICKKNKSNPS 749 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 833 + + V + + ++ ++I + G + +D + Sbjct: 750 RLQYVLAVKTGQNLEFGGEFRQIL--STTDIPFKEKE-MGFSTLSLDKDHYL 798 >UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y886_COPPD Length = 758 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 309/820 (37%), Positives = 467/820 (56%), Gaps = 71/820 (8%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 I I EELK SY+DYAMSVIVGRALPDVRDGLKPV RR++Y+M+ G+ +N YKKSA Sbjct: 4 IHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKSA 63 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 R+VGDV+GKYHPHGD++VYD +VRMAQ F +RY LVDG GNFGS+DGD AAMRYTE+RL Sbjct: 64 RIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVRL 123 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +++ L+ DL+K+TV++V N+DG+ K P+V+P P LLVNGSSGIAVG++T IPPHNL Sbjct: 124 TRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHNL 183 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 E+I+ L ++ + + + LM + GPDFPT I + + + Y G+G + +R RA+ Sbjct: 184 GEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQDLVKVYEEGKGVIRVRGRAK 243 Query: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 +E R ++++EIPY VNKA L+ +IA+L++++++ G+ +RDES++ G+R+V+E+ Sbjct: 244 LEEGHGQKR-RLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLEL 302 Query: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 K+ A +LN LY QT L+ SF INMVAL G P + L+D IA+FV R+E + RRT Sbjct: 303 KKGASFHHILNQLYEQTALENSFAINMVALKDGAPVQLTLRDYIASFVDFRKETILRRTR 362 Query: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 + L KA R ++E + AL NID +IE+IR+A T +AK L++ Sbjct: 363 YLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQI------------- 409 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 LTE QA+A+L+++L+ L +E EK+ E + LL IAE Sbjct: 410 ---------------------GLTEVQAEAVLEIKLRSLVHMEKEKVEQELESLLKAIAE 448 Query: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 IL S +L+EVI EEL+ V++ F D+RRT I + +E + L G Sbjct: 449 YTEILNSETKLLEVIAEELKHVKKLFADQRRTLIGFSDQQ-TETVQAAEETFFIELLEYG 507 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 ++ + + D ++ ++ G+++ + Y++ Sbjct: 508 IIRRSKTQT--------------------NLVDFIEVQGSDPVMFLTNFGKIFCISAYEI 547 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 PE+ R G + L P+ DE++ + + ++ + G K+ L Sbjct: 548 PESQR---GVALNALFPMGNDEKVLLL-----GTQNQELIAISEKGKGKRFRLDVEKIPS 599 Query: 668 TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG 727 G + L GD ++ V + E+++ SA+GK +R S+ G T GV+ +R Sbjct: 600 RGGYYFL-LDPGD-MVSVIVPVTSKELVVISAQGKALRLDVESIPERGLRTGGVKVMRTY 657 Query: 728 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787 EGD+VV + I+T T+N Y KRT + E P ++R GV K E G V+G Sbjct: 658 EGDRVVGATCLK-QKYIVTMTENAYAKRTDIDEIPKRNRGAAGVFIHKANETTGPVIGV- 715 Query: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 C++ M+ + +S+I + + + G ++RT Sbjct: 716 ---SCNENMLYRSGREWLPLSMSDIPVCSKASMGKKVLRT 752 Score = 92.7 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 17/192 (8%) Query: 682 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 L+ G D VM + GK+ + +G +KV L++ + Sbjct: 518 LVDFIEVQGSDPVMFLTNFGKIFCISAYEIPESQRGVALNALFPMGNDEKV--LLLGTQN 575 Query: 742 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 ++ ++ G GKR + SR G +V + ++++I+ Sbjct: 576 QELIAISEKGKGKRFRLDVEKIPSRGG-----YYFLLDPGDMVSVIVPVTSKELVVISAQ 630 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDE 861 G +R V I G T GV ++RT E + VVG + + ++ Sbjct: 631 GKALRLDVESIPERGLRTGGVKVMRTYEGDRVVGATCLKQKYI----------VTMTENA 680 Query: 862 IAPEVDVDDEPE 873 A D+D+ P+ Sbjct: 681 YAKRTDIDEIPK 692 >UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF72_ACHLI Length = 857 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 302/872 (34%), Positives = 474/872 (54%), Gaps = 59/872 (6%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + +I V +E+ + S + Y+ +I RALPD RDGLKPV RR+LYAM +G +NK+Y Sbjct: 12 IEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSY 71 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+ G+V+GKYHPHGDS++Y+ +VRM+Q F +R LVD GN GSIDGDSAAAMRYT Sbjct: 72 KKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAMRYT 131 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+K A L+ D++K TV+FV N+D E+ P V+P + PNLLVNG+ GI+ G AT IP Sbjct: 132 EARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYATKIP 191 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EVI+ +A ID+ +I+ + ++++I GPDFPT I+ G+ GI+EA TG GK+ IR Sbjct: 192 PHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGGIVQGKAGIKEALTTGSGKIIIR 251 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 A+ VE +K ++ I++ EIPY+VNKA L+ +I L +E I +RDE+D++G+RI Sbjct: 252 AKMNVEEMSK-SQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEGLRI 310 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 I++K+ A + + N L + LQV++ NMVA+ +P + +++ ++ H++EVVT Sbjct: 311 AIDLKKGADAQFIQNYLLKSSDLQVNYNYNMVAILKHRPVLSGAFELLKVYLEHQKEVVT 370 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 R+ +EL +A R HI++ L + + +IE IR + A++K + Sbjct: 371 NRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKR---------- 420 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + +E QA+AI+ L+L +L+ + + LLDE L Sbjct: 421 ------------------------FGFSELQAEAIVMLQLYRLSTTDIQALLDEKDTLYK 456 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA--DINLEDLITQEDVVV 541 +I L +IL + L++ I+ EL+ V+ RRTE+ A I+ +DLI+ E V Sbjct: 457 EITRLEQILSNERILLKTIKSELQEVQTLLPSPRRTELEAEIETIKIDEKDLISDEQTYV 516 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 ++ GYVK L A + G +KE D + NT D +L F++ G+ Sbjct: 517 AITKDGYVKRASLRSVVASKEVG-------LKENDAMLYEEELNTLDTLLLFTNLGQYIY 569 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + VY++ E G I N++P + E I +L V++F K+ + T G +K+ L Sbjct: 570 LPVYKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVSDFSIDQKILLTTKQGQMKQVNLA 629 Query: 662 EFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 +F R A+KL DEL+ VD + D ++ S G V+RF + G G Sbjct: 630 DFEVSRYNRPLRAMKLSKDDELVSVDY-NQLDNIVAISKHGYVLRFDTEELPVYGLTAGG 688 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 V+ + L EGD+V + T G+ + V E P +R +G+I + + + Sbjct: 689 VKSMALAEGDEVAVAFYAKESDDFYFLTSRGHIIKDTVLELPKYARNRRGIILVDRIKTS 748 Query: 781 GLV------VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 V Q+ + ++ +++ L+ T VS++ V N G ++ Sbjct: 749 PHFIISASRVSKTQIKEDVKVRILSTKEALI-TTVSDLKYVA-NKYGKKMVEDGY----- 801 Query: 835 GLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEV 866 L+ +E+D + DD + +V Sbjct: 802 YLEIYPAETEEKDTPVQPKKEVKKDDTLQAKV 833 >UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIX4_9CHRO Length = 834 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 288/860 (33%), Positives = 454/860 (52%), Gaps = 69/860 (8%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I P+ + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+L+AM+ LG ++ Y+ Sbjct: 17 DGRIQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 76 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARVVGDV+GKYHPHGD AVYD +VR+ Q F+ R+ L+DG GNFGS+D D AAMRYTE Sbjct: 77 KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 136 Query: 125 IRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RLA IAHE L+ ++ +TVDF N+DG+++ P V+P ++P LL+NG +GIAVGMATNIP Sbjct: 137 TRLAPIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIP 196 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EV++ +A I D+S E L +PGPDFPT + G+ + YR GRG + +R Sbjct: 197 PHNLGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLSSGVRDTYRLGRGSIPMR 256 Query: 244 ARAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 A +E + R +++ E+PYQ++KA IEK+AE V + ++ GI+ +RDESD++ Sbjct: 257 GVAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 316 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMR+V+E++RDA + VL L +T LQ +FG ++AL +GQP ++L+ ++ F+ +R Sbjct: 317 GMRVVVELRRDANADTVLAELQRRTALQSNFGAILLALVNGQPVQLSLRRLLQEFLDYRE 376 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 + RRT LR+ DR ++E L AL + +I +I A A A+ +L Sbjct: 377 LTLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVR------ 430 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 L+E+QA A+L + L++LTGLE E L E + Sbjct: 431 ----------------------------LDLSERQADAVLAMPLRRLTGLEQESLRQESE 462 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE-------- 531 EL + L +L D L+E + E +++++G RRT + D+ + Sbjct: 463 ELRTERTRLRHLLDDRDSLLEAMVAEFRALKKRYGTPRRTRLVEGGDDLVAQRAAAARPN 522 Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDR-LLVANT 586 + ++ + L+ V Q + G+ A + E + LL + Sbjct: 523 AELQRQQALEALASDSRVLIQADRAVKIVTPQVLGRLHLEEPAPLGEHPAPAQLLLTVAS 582 Query: 587 HDHILCFSSRGRVYSMKVYQLPEATRGARGR---PIVNLLPLE-QDERITAILPVTEFEE 642 +L F++ GRV + G+ P+ LP + + +LP+ E + Sbjct: 583 QPQVLAFTTDGRVAVL--------RWEFAGQQPGPLERFLPDSLEGASVMQVLPLQEGSD 634 Query: 643 GV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEG 701 + + +++G K+ L + L +KL +G L V E+++ S+ G Sbjct: 635 PHLSIGLLSSDGRFKRLPLDDLQDLSGRAATVLKLKEGVTLQRVVPCRSGAELVVASSTG 694 Query: 702 KVVRF--KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 759 +++R E V MG G +RL +++V G++L A++ G K+ AV Sbjct: 695 RMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVPASGSVLLASRQGQVKKLAVE 754 Query: 760 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 819 R G+I I+ ++R +V A+ + + ++ R +++ N Sbjct: 755 SLRRCERGDLGLIGIRFSQRGDALV-ALSSGEHPLVAVLAGENRSARLSSGSLALEDANG 813 Query: 820 QGVILIRTAEDENVVGLQRV 839 G+ L E++ L + Sbjct: 814 SGLTL-ELRPGESLRDLVPL 832 Score = 56.9 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 728 EGDKVVSLIVPRGDGA----ILTATQNGYGKRTAVAEYP-TKSRATKGVISIKVTERNGL 782 EG V+ ++ + I + +G KR + + RA ++ + Sbjct: 619 EGASVMQVLPLQEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAA----TVLKLKEGVT 674 Query: 783 VVGAVQVDDCDQIMMITDAGTLVRTRVSE--ISIVGRNTQGVILIRTAEDENVVGLQRVA 840 + V ++++ + G ++R +E + ++GR QG +L+R DE +VG V Sbjct: 675 LQRVVPCRSGAELVVASSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVP 734 Query: 841 E 841 Sbjct: 735 A 735 >UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms RepID=GYRA_MYCLE Length = 1273 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 306/730 (41%), Positives = 453/730 (62%), Gaps = 42/730 (5%) Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL +A E++ ++++ETVDF+ NYDG + P V+P++ PNLL NGS GIAVGMATNI Sbjct: 551 TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610 Query: 183 PPHNLTEVINGCLAYIDDEDISIE----GLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG 238 PPHNL E+ + +++ D E +ME + GPDFPTA +I G +GI +AY+TGRG Sbjct: 611 PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE-SD 297 + IR EVE D++ GR ++++ E+PYQVN I IAE V+ R+ GIS + D+ SD Sbjct: 671 SIRIRGVVEVEEDSR-GRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 + G+RIVIE+KRDAV +VVLNNLY TQLQ SFG NM+++ G P+ + L +I +V H Sbjct: 730 RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEH 789 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 + +V+ RRT + LRKA +RAHIL L AL +D +I LIR + T A+ +V Sbjct: 790 QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVE----- 844 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 L + + QAQAILD++L++L LE ++++D+ Sbjct: 845 -----------------------------LLDIDDIQAQAILDMQLRRLAALERQRIIDD 875 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 ++ +IA+L IL +R +IR EL + E++GD RRT I A D+N EDLI +E Sbjct: 876 LAKIEVEIADLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIARE 935 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 +VVVT++ GY K Y +Q+RGGKG A +K++D + V +THD IL F+++G Sbjct: 936 EVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQG 995 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 RVY K Y+LPEA+R ARG+ + NLL + +ERI ++ + +E+ + +AT G VKK Sbjct: 996 RVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRAGLVKK 1055 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAMG 715 + LT+F+ R+ G VAI L D DEL+G L + + +++L SA G+ +RF + +R MG Sbjct: 1056 SKLTDFDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMG 1115 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 T+GV+G+R D+++SL V R D +L AT GY KRT++ EYP + R KGV+++ Sbjct: 1116 RATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVM 1175 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 R G +VGA+ VD+ ++ IT G ++RT ++ GR T+GV L+ E + ++ Sbjct: 1176 YDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLA 1235 Query: 836 LQRVAEPVDE 845 + R AE + Sbjct: 1236 IARNAEESAD 1245 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 77/117 (65%), Positives = 97/117 (82%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + PV+I++E++ SY+DYAMSVIVGRALP+VRDGLKPVHRRVLYAM G ++++ K Sbjct: 14 QRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAK 73 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 SAR V + +G YHPHGD+++YDT+VRMAQP+SLRY LVDGQGNFGS D AAMRY Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 6/185 (3%) Query: 683 IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742 I V++ D + ++R + + + + R I + V + + Sbjct: 879 IEVEIADLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGD--VNDEDLIAREE 936 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802 ++T T+ GY KRT Y ++ R KGV + +++ +V D I+ T G Sbjct: 937 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL-KQDDIVRHFFVCSTHDWILFFTTQG 995 Query: 803 TLVRTRVSEISIVGRNTQGVILIRT---AEDENVVGLQRVAEPVDEEDLDTIDGSAAEGD 859 + R + E+ R +G + +E + + ++ D L + Sbjct: 996 RVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRAGLVKK 1055 Query: 860 DEIAP 864 ++ Sbjct: 1056 SKLTD 1060 >UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=GYRA_AQUAE Length = 744 Score = 749 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 312/799 (39%), Positives = 467/799 (58%), Gaps = 73/799 (9%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + + IEEE+K +Y+DYAMSVIVGRA+PDVRDGLKPV RR+LY+M +G +K +KK Sbjct: 5 ENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKK 64 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SAR+VG+ +GKYHPHGD AVY+ +VRMAQ F++RY L+ GQGNFGSIDGD AA MRYTE Sbjct: 65 SARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEA 124 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 +L+ +A E++ D++K+TVDF N+D T P+V+P+K PNLL NG+SGIAVG+AT+IPPH Sbjct: 125 KLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPH 184 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NLTEV N + + IS++ +ME + GPDFPT +I ++E Y+TGRG + ++ + Sbjct: 185 NLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKVKGK 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 A VE + GRE I++ EIPYQVNKA LI+KIA+ V+ +++ IS +RDE+DK+G+RIV+ Sbjct: 245 AHVE-KVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVV 303 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E+KRDA GE VL LY T L+ F +N+V L +PK++++K ++ F++HR EV+ RR Sbjct: 304 ELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVILRR 363 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + + L+K +DR HI+E L A+ ID IIE IR + +EA+ L+ Sbjct: 364 SKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEE------------ 411 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E+QAQA+LDLRLQ+LT LE EKLL+E KEL ++I Sbjct: 412 ----------------------FGLSEKQAQAVLDLRLQRLTSLEREKLLEEEKELREKI 449 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 +++ S ++V EE E + +++GDKRRT I + + + V + Sbjct: 450 EYYKKLVASEGERIKVFIEETEELVKKYGDKRRTFIGG-------VKEVKEGSITVAVLQ 502 Query: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 G + P+ E ++ E + S+RGRVY + Sbjct: 503 DGSI--IPVEELPLEKAPVVNILRVPFTEG--------------LFLVSNRGRVYWIAGS 546 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 Q + ++ + ++E+I +F G ++ +AT G VKK L EF Sbjct: 547 QALQGSKVSL---------KSREEKIVGAFIREKF--GNRLLLATKKGYVKKIPLAEFE- 594 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 + G IKL +GDE++ + + E ++LF+ +G+V RF V GV+GI+ Sbjct: 595 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK 654 Query: 726 LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVG 785 L + D+ L + G+ +L T G K+ + E P +R KG + +V Sbjct: 655 LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEV---SGTKDTLVD 711 Query: 786 AVQVDDCDQIMMITDAGTL 804 + + + ++++ T G Sbjct: 712 LIPIKEEVELLITTKNGKA 730 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 44/277 (15%) Query: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGD----- 680 + ERI + TE + G ++T + ++ L DG Sbjct: 458 SEGERIKVFIEETEE-------LVKKYGDKRRTFIGGVKEVKEGSITVAVLQDGSIIPVE 510 Query: 681 -------ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVV 733 ++ + + + L S G+V S G + +K+V Sbjct: 511 ELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ------ALQGSKVSLKSREEKIV 564 Query: 734 SLIVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 + +L AT+ GY K+ +AE+ K +G+ IK+TE VV D Sbjct: 565 GAFIREKFGNRLLLATKKGYVKKIPLAEFEYK---AQGMPIIKLTE-GDEVVSIASSVDE 620 Query: 793 DQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN--------------VVGLQR 838 I++ T G + R V E+ +GV I+ +++ V+ + Sbjct: 621 THILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKG 680 Query: 839 VAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875 + + E++ + + + VD P +E Sbjct: 681 RVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKE 717 >UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae RepID=D2REE0_ARCPR Length = 738 Score = 749 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 335/820 (40%), Positives = 475/820 (57%), Gaps = 91/820 (11%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 E+ +I EELK +YLDYAMSVIVGRALPDVRDGLKPV RR+LYAM +G +K + K Sbjct: 3 EVLIRDIAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKC 62 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVG V+G YHPHGD+ VY+ +VRMAQ FS+RY L+DGQGNFGSIDGD AAMRYTE R Sbjct: 63 ARVVGHVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECR 122 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L +IA +++ D++K TVDF N+D +++ P V+P KIPNLL+NG +GIAVGM TNIPPHN Sbjct: 123 LTEIAEKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHN 182 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246 + EV +G +AYI + +ISIE LM I GPDFPT +I GR GI EAYRTG+GK+ +R + Sbjct: 183 IREVCDGIIAYIKNPNISIEELMNFIKGPDFPTGGVIVGRDGIIEAYRTGKGKIILRGKV 242 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 +VE D II+ EIPY VNKA+L+EKIA+L+K+ ++ +RDESD++G+R+VIE Sbjct: 243 DVEED------KIIIREIPYMVNKAKLVEKIADLIKKDKLLA-KTVRDESDREGIRVVIE 295 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366 +K D L LY T L+V+F + M+AL + +PK++NLK++IA +V HRREVV R+ Sbjct: 296 LKED--PYSALKKLYDHTPLKVTFNVVMLALVNNEPKLLNLKELIAHYVNHRREVVRRKA 353 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 +EL+KA +R HI+E L A+ +D +I LI+ + + AK L+ Sbjct: 354 EYELKKAEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMK-------------- 399 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 L +TE+QA+AIL LRLQ LT LE+E L+ E+ EL +I Sbjct: 400 --------------------LLRITEKQAEAILQLRLQMLTRLEYESLMKEFNELKGRID 439 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 EL IL R+ E+I EEL V+ +FGD RRTEI E+ V ++ Sbjct: 440 ELKSILADPKRVDEIIVEELREVKRKFGDNRRTEIIDKE-----ILKEVVEEFGVAVTLD 494 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 G +K + ++ LL A ++ IL FSS + YS+ Sbjct: 495 GQIKRFEI--------------GKALRSN--PKILLRAMSNLDILLFSSD-KAYSIHARD 537 Query: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 666 +P P+ + E+ E T ++ + V + + +G +KK L EF Sbjct: 538 IPLDF-----TPLSKFISAEKVE--TGVVAKGD------VVILSKDGNIKKVRLEEFANA 584 Query: 667 RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 726 + AG +A E IG + +V++ + G +VRF+ S + G + GV+ I L Sbjct: 585 KRAGIIA------GENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEYGRSAKGVKAITL 638 Query: 727 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 EGD++ + + +GD +L T++GY K+ + E+ +R GV ++ G + A Sbjct: 639 REGDEIAWMSIGKGD-YVLILTRDGYAKKVPIDEFRLTNRGAMGVRGVR-----GEIAVA 692 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 V + ++ T G VR V I R +G ++ Sbjct: 693 EIVSE-EEYYAYTSEGNAVRINVKRIPKGDRYKKGKKIVD 731 Score = 64.2 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 64/481 (13%), Positives = 155/481 (32%), Gaps = 81/481 (16%) Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 +++ R + + KA+ ++E +A + + + +R + + Sbjct: 248 KIIIREIPYMVNKAK----LVEKIADLIKKDKLLAKTVRDESDREGIRVVIELKEDPYSA 303 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLR--LQKLTGLEHEKLLDE 477 + + + + L L E A + R +++ E +K + Sbjct: 304 LKKLYDHTPLKVTFNVVMLALVNNEPKLLNLKELIAHYVNHRREVVRRKAEYELKKAEER 363 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 + I + ++ D ++ +I++ + A + L + ++ Sbjct: 364 NHIVEGLIRAIEKL----DEVINLIKQS------------DSTKNAKEGLMKLLRITEKQ 407 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 + + + KG+ D + + Sbjct: 408 AEAILQLRLQMLTRLEYESLMKEFNELKGRI-------DELKS-----------ILADPK 449 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 RV + V +L E R ++ E + + T +G +K+ Sbjct: 450 RVDEIIVEELREVKRKFGDNRRTEIIDKEILKEVV----------EEFGVAVTLDGQIKR 499 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 + LR+ K+ ++ +++LFS++ K + Sbjct: 500 FEIG--KALRSNPKILLR------------AMSNLDILLFSSD-KAYSIHARDIPLDFTP 544 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 + +KV + +V +GD ++ +++G K+ + E+ RA Sbjct: 545 -----LSKFISAEKVETGVVAKGD--VVILSKDGNIKKVRLEEFANAKRAGI-------- 589 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQ 837 G +G ++ + +++ T G +VR R SEI GR+ +GV I E + + + Sbjct: 590 -IAGENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEYGRSAKGVKAITLREGDEIAWMS 648 Query: 838 R 838 Sbjct: 649 I 649 >UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVW0_9AQUI Length = 781 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 325/841 (38%), Positives = 480/841 (57%), Gaps = 74/841 (8%) Query: 17 LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 76 +K SY+DYAMSVIVGRA+PDVRDGLKPV RR+LYAM +G K +KKSARVVG+V+GK Sbjct: 12 VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71 Query: 77 YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 136 +HPHGD AVYD +VRMAQ FS+RY L+ GQGN+GS+DGD A MRYTE +L+K+A EL+ Sbjct: 72 FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131 Query: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196 D++K+TVDF+ N+D + P V+P+K PNLL NG++GIAVG+AT+IPPHNL EV + Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191 Query: 197 YIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGR 256 + ++S E ++E + GPDFPT +I + I+E Y TGRG V ++A+A VE + GR Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVIENYKDIKEIYETGRGIVQVKAKAHVE-KVQGGR 250 Query: 257 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVV 316 E IIV EIPYQVNKA LI+KIA+ V+ R++ IS +RDESDKDG+RIVIE+KR+A GE V Sbjct: 251 EQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKV 310 Query: 317 LNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDR 376 L L+ TQL+ F +N+V L +G+PK++ +K+++ F++HR ++ RRT F L+KA DR Sbjct: 311 LKKLFKYTQLRKGFPVNLVVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKKAEDR 370 Query: 377 AHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEW 436 H+++ L +AL N+D +IE IR + EA+ L A Sbjct: 371 LHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQAR----------------------- 407 Query: 437 LEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSAD 496 + LTE+QAQA+LDLRL +LT LE +KL E +LL +I +++GS + Sbjct: 408 -----------FGLTERQAQAVLDLRLHRLTSLERDKLRQEEADLLQKIEYYRKVVGSEE 456 Query: 497 RLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSE 556 +++ EE E + ++FGD RRT +E+ I + +VV + G K P+ Sbjct: 457 ERIKIFVEETENLVKKFGDPRRT------FIEGIEEKIEEGSLVVAVLENG--KVMPVEN 508 Query: 557 YEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 616 E + S+RGRVY + Q + ++ Sbjct: 509 MPEGESPVVDILDVPFTEG--------------LFLVSNRGRVYWLAGSQALQGSKVNF- 553 Query: 617 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL 676 E +E I F + ++ +AT NG +KK L EF + G IKL Sbjct: 554 --------KESEEYIVGAFIRERFAD--RLLLATRNGMIKKIPLVEFE-YKAQGMRIIKL 602 Query: 677 VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI 736 + DE++G+ + ++++F+ GKV RF + A T G +GI++ + D+V Sbjct: 603 AEDDEVVGIAQSIDMSDILMFTRRGKVARFSIREIPAATPGTKGAQGIKVEDNDEVAGAR 662 Query: 737 VPRGD-GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 795 V R D I+ T +G KR E ++R KGV + +V + + D ++ Sbjct: 663 VIREDQPYIIVVTVDGKVKRIYQQEIGVRNRGVKGVNVLGSARE--RLVDLLPIKDELEL 720 Query: 796 MMITDAGTLV--RTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDG 853 ++ T G R R +I + R+ + E++ + + +E E+ ++ D Sbjct: 721 LITTKLGRAFYDRIRAEDIPLSKRDRLAKERWKLEEEDEIRRIVIKSEGKGYEEGESSDN 780 Query: 854 S 854 + Sbjct: 781 A 781 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 13/177 (7%) Query: 682 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 741 ++ + + + L S G+V S G + + E ++ + R Sbjct: 516 VVDILDVPFTEGLFLVSNRGRVYWLAGSQ------ALQGSK-VNFKESEEYIVGAFIRER 568 Query: 742 --GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMIT 799 +L AT+NG K+ + E+ K +G+ IK+ E + VVG Q D I+M T Sbjct: 569 FADRLLLATRNGMIKKIPLVEFEYK---AQGMRIIKLAE-DDEVVGIAQSIDMSDILMFT 624 Query: 800 DAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA 856 G + R + EI T+G I+ +++ V G + + E + T+DG Sbjct: 625 RRGKVARFSIREIPAATPGTKGAQGIKVEDNDEVAGARVIREDQPYIIVVTVDGKVK 681 >UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales RepID=C9Z0I9_STRSW Length = 818 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 301/860 (35%), Positives = 449/860 (52%), Gaps = 81/860 (9%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 I +++ +E++ S+L+YA SVI RALPD RDGLKPVHRR++Y MN +G ++ Sbjct: 13 DAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDR 72 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA-AAM 120 Y K ARVVG+V+GK HPHGDS++YD +VR+AQPFS+R LVDG GNFGS+ D AAM Sbjct: 73 GYVKCARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAM 132 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE R+A + +E+ TVDF NYDG E+ P +P PNLLVNG+SGIAVGMAT Sbjct: 133 RYTECRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMAT 192 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+PPHNL EVI I + ++ LM+H+PGPD PT I G GI +AY TGRG Sbjct: 193 NMPPHNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIVGLSGIRDAYATGRGTF 252 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-D 299 IRA V+ R+ +IV E+P+ V ++I KI +LV K+++GI+ ++D +D+ Sbjct: 253 KIRATVTVDNVTAR-RKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAH 311 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 G+R+VIE+K V E VL LY T ++ SFGIN VAL GQP + LK+++ ++ HR Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EVV RR+ F K RDR H++E L AL +ID +I LIR + A+AK L+ Sbjct: 372 EVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIER------ 425 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L++ Q Q ILD L++LT + +L E + Sbjct: 426 ----------------------------FALSDIQTQYILDTPLRRLTRFDRIELESEKE 457 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQE 537 +L +IAEL RIL S L +++ EL V ++FG +RRT + +S + + + Sbjct: 458 KLNTEIAELTRILESDAELRKLVSGELAAVAKKFGTERRTVLLESSGTQVAAVPLQVADD 517 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 V LS G + +E G+ + D I + A + +S G Sbjct: 518 PCRVLLSSTGLLARTASAEPFTADEDGR------RTKHDVIVSAVPATARGEVGAVTSTG 571 Query: 598 RVYSMKVYQLPEATRGAR------GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 R+ + V LP+ + G P+ L L+ E + ++ + E G + + T Sbjct: 572 RLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTLDESSPG--LAIGTE 629 Query: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIG-VDLTSGEDEVMLFSAEGKVVRFKESS 710 G VK+ + ++ + I L +GD ++G V+L +GE++++ + + +++R++ + Sbjct: 630 QGVVKRV-VPDYPSNKEE-LEVISLKEGDRIVGAVELRTGEEDLIFITDDAQLLRYQAAQ 687 Query: 711 VRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY-----------GKRTAVA 759 VR G G+ GI+L EG KV+S + T G K T Sbjct: 688 VRPQGRPAGGMAGIKLTEGAKVISFTAIDPAVDAVVFTVAGSRGTLDDSVQTTAKLTPFD 747 Query: 760 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVG--R 817 +YP K RAT GV + + + A + GT +++ + R Sbjct: 748 QYPRKGRATGGVRCQRFLKGEDCLSIAWAGPAPAR--AAQKNGT-----PADLPEMDPRR 800 Query: 818 NTQGVILIRTAEDENVVGLQ 837 + GV L + V + Sbjct: 801 DGSGVSL-----GKTVASVA 815 Score = 82.7 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 90/253 (35%), Gaps = 21/253 (8%) Query: 632 TAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 691 A +P+ ++ +V + ++ G + +T E G+ D ++ + Sbjct: 507 VAAVPLQVADDPCRVLL-SSTGLLARTASAEPFTADEDGRR----TKHDVIVSAVPATAR 561 Query: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG---------IRLGEGDKVVSLIVPRGDG 742 EV ++ G+++R + + + + L +G+ +V L+ Sbjct: 562 GEVGAVTSTGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTLDESS 621 Query: 743 AILTA-TQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDA 801 L T+ G KR P + + I + E + +V + ++ ITD Sbjct: 622 PGLAIGTEQGVVKRV----VPDYPSNKEELEVISLKEGDRIVGAVELRTGEEDLIFITDD 677 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE--EDLDTIDGSAAEGD 859 L+R + +++ GR G+ I+ E V+ + VD + G+ + Sbjct: 678 AQLLRYQAAQVRPQGRPAGGMAGIKLTEGAKVISFTAIDPAVDAVVFTVAGSRGTLDDSV 737 Query: 860 DEIAPEVDVDDEP 872 A D P Sbjct: 738 QTTAKLTPFDQYP 750 >UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F36_OENOB Length = 811 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 270/854 (31%), Positives = 468/854 (54%), Gaps = 52/854 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+D I +++E+ + + Y+ +I RALPD+RDGLKPV RR+L+AMN GN + Sbjct: 1 MTD-ESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQ 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 AY+KSA+ VG+V+G YHPHGDS++YD +VRM+Q + +R L+D GN GSID D AAM Sbjct: 60 HAYRKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+ IA +++ DL+++ VD V N+D T P V+P++IPNLLVNG+SGI+ G AT Sbjct: 120 RYTEARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL EVIN + + S+E LM+++ GPDFPT II G GI+ AY TGRGKV Sbjct: 180 EIPPHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 Y+RA+ E++ + G++ I + E+PY+VNK+ L+ +I E+ K V GI+ +RD++ ++G Sbjct: 240 YLRAKTEIKQ-LRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I IE+ +DA E +L+ L+ +T LQ+++ NM A++ +P + LK ++AF+ R+E Sbjct: 299 LLIAIELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RRT FEL+KA+ R I+E L L+ +D ++ IR + + AK L+ Sbjct: 359 VIRRRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKK------- 411 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++ QA+AI+ L+L +LT + L +E+ Sbjct: 412 ---------------------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDR 444 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA--DINLEDLITQED 538 L QI+E IL L +V+R EL+ + +++ + RR++I + I+ +I ED Sbjct: 445 LTKQISEFNSILKETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANED 504 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V+V ++ GY K Y+A G + ++D+ L NT + F+++G Sbjct: 505 VIVQITKNGYAKRASFRSYKATDDNG-------LTDDDYPVYLAKVNTLSSLFIFTNKGN 557 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 + +VY+L + G + + L +DE + + + ++ +++ VK+ Sbjct: 558 LIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQ 617 Query: 658 TVLTEFNRLRTAGKV---AIKLVDGDELIGVDLTSGEDE-VMLFSAEGKVVRFKESSVRA 713 N + K AI + + L+ V + ++ V++ + +G + +F + Sbjct: 618 VDKNALNPTKYYKKRASKAIAIKGKNVLVSVAFAASQNHLVVMATQKGYLYKFPIGEIAL 677 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-KGVI 772 M ++G + ++ + D++VS+ + + ++ + G+ K E P + + + Sbjct: 678 MTAKSSGAKPAKISKKDRIVSMDLIDSEDLMVLMSDRGHSKIINPLEIPISTVNSVQKAE 737 Query: 773 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDEN 832 +I + + A+ ++ IT+ ++ V+ +I G + + ++ ++ Sbjct: 738 TIFMADEIIGGTQAISRSKKSELQAITNDNQVIDFSVNPNNISGLDDEFKRKVKVNKNSM 797 Query: 833 VVGLQRVAEPVDEE 846 +V + R+ + V E Sbjct: 798 IVKV-RLKQEVIEN 810 >UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L827_MAGSM Length = 754 Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 296/794 (37%), Positives = 434/794 (54%), Gaps = 65/794 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MS+ +I P N+ EEL+S YL YA+S I+ R+LPDVRDGLKPVHRR+L+AM L D N Sbjct: 1 MSNTFEQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 YKKSARVVGDVIGKYHPHGD A YD +VR+AQ F++RY LVDGQGNFG+IDGDSAAAM Sbjct: 61 SPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL +A L+ DLE +TVDF+ YDG+ + P V+P + PNLL NGSSGIAVGM+T Sbjct: 121 RYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMST 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGK 239 N+PPHN+ E+++ CL I + SIE LM+H+P PDFPT I+ E Y GRG Sbjct: 181 NVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRGS 240 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 + +RAR VE D G I+V EIPYQV K+RLIE+IA+LV +++ ++ +RDESD++ Sbjct: 241 LRLRARWAVE-DLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDEN 299 Query: 300 GMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHG-QPKIMNLKDIIAAFVRH 357 +RIV+E + R E++++ L+ + L+ N+ + G +P++++LK I+ ++ H Sbjct: 300 -LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLDH 358 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R V TRR +EL+K R+R H+L+A + NID +IE+I+ PA Sbjct: 359 RFVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPA------------- 405 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 V + L E QA+AIL++RL+ L LE K+ E Sbjct: 406 ------------------------PVLMARFSLDEIQAEAILNMRLRNLRKLEEMKIRKE 441 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DLIT 535 +EL + L +L + + IR+EL+ R++F D RRTEI + D+++ D + Sbjct: 442 MEELQARADLLEAMLADDKIMWKAIRDELKATRKEFADVRRTEICGSVEDVHVRPEDFVE 501 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 +E + V LS G+VK + R K +D + R T+ + S Sbjct: 502 KEPISVILSQMGWVKANKGHDVNT--------EVLRFKGDDLLLRSFPCYTNQSVSFISQ 553 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 G+++++ LP G P+ ++ L+ +R+ LPV + + + T G Sbjct: 554 SGKLFTILASNLPAGK--GFGEPLTSMFDLDGGDRVLWALPV---DPEQEYLLITRLGQG 608 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 + + + GK I L GD+ + + G V S +++ F M Sbjct: 609 FRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGP-WVGSISRSRRLLIFPIEQFPLMA 667 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 GVR +LG + VV + + + + K + +RA +G + Sbjct: 668 -KGKGVRVQKLGADEVVVDVTTFTDEEGFVLDS-GKKTKHVTDYDQWHGNRAGRGAMLP- 724 Query: 776 VTERNGLVVGAVQV 789 +G + GAV Sbjct: 725 ----HGFLSGAVFA 734 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 12/213 (5%) Query: 632 TAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 691 + P E+ + + G VK + N ++ D L+ Sbjct: 492 VHVRPEDFVEKEPISVILSQMGWVKANKGHDVNTE------VLRFKGDDLLLRSFPCYTN 545 Query: 692 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI-RLGEGDKVVSLIVPRGDGAILTATQN 750 V S GK+ S++ A + + L GD+V+ + + L T+ Sbjct: 546 QSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWALPVDPEQEYLLITRL 605 Query: 751 GYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 810 G G R + R K +I++K ++ + + I+ + L+ + Sbjct: 606 GQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPV----KGPWVGSISRSRRLLIFPIE 661 Query: 811 EISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 843 + ++ + +GV + + DE VV + + Sbjct: 662 QFPLMAK-GKGVRVQKLGADEVVVDVTTFTDEE 693 >UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinobacteria (class) RepID=C5CCL2_MICLC Length = 868 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 312/902 (34%), Positives = 454/902 (50%), Gaps = 110/902 (12%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 I V++ EE+++S+L+YA SVI RALPD RDGLKPV RR+L+ M+ +G ++ + K Sbjct: 24 ENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRGHVK 83 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVG+V+GK HPHGD+A+YD +VR+AQPFSLR +VDG GNFGS+D D AA RYTE Sbjct: 84 SARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRYTEA 142 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 R+A A L ADL++ TVDFV NYD + P V+P PNLLVNG++GIAVGMATN+ PH Sbjct: 143 RMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNMAPH 202 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL EV+ G + D + +E +M HIPGPD P+ I G G+ +AY TGRG +RA Sbjct: 203 NLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIVGLDGVRDAYATGRGTFRMRAA 262 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRIV 304 VE + R ++V E+PY V ++IE+I V K++ GI+ + D +D+ +G+R+ Sbjct: 263 VAVEQVSAR-RTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRLQ 321 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTR 364 IE+K + VL LY T L+ +FGIN VAL GQP+ + L ++ +V HR +VV R Sbjct: 322 IELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYVDHRLDVVRR 381 Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 RT L K RDR H++E L +AL +ID +IE+IR + A A+T L+ Sbjct: 382 RTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM------------- 428 Query: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 G++ LT+ QA IL+LRL++LT +L E EL Sbjct: 429 ---------------------GVFDLTQVQADHILELRLRQLTKFSRIELQAERDELQAA 467 Query: 485 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS------------------- 525 IAEL IL S RL EV+ EL+ V ++ GD RRT + Sbjct: 468 IAELEAILASDARLREVVSAELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAGA 527 Query: 526 ADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585 A+ ++ ++ LS G + A R ++ D ++ Sbjct: 528 AEAGVDLMVPDTACWALLSTSGRLLRTADRTPIA--------PQGRRRKHDAFASVVPTT 579 Query: 586 THDHILCFSSRGRVYSMKVYQLPEATRGARGR------PIVNLLPLEQDERITAILPVTE 639 I +S G ++ ++ LP A + P L+PL + E + A++P+ Sbjct: 580 ARGEIGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL-- 637 Query: 640 FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE-DEVMLFS 698 + + TA+G VK+ L A+ L DGD ++G E D+++ + Sbjct: 638 ---DTVMALGTAHGVVKRVRPE--WPLNRQVVDAVALKDGDAVVGAAPAPDEADQLVFLT 692 Query: 699 AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV--------------------- 737 G+++R+ S+VR G GV GIRL GD V++ V Sbjct: 693 RTGQLLRYAASAVRPQGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAV 752 Query: 738 ---PRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE-RNGLVVGAVQVDDCD 793 A + + G K T + EYP K R T GV + ++ + +GLV+G + Sbjct: 753 VVTVTDGEADVLGSAPGSVKVTPLGEYPAKGRGTGGVRAHRLLKGESGLVLGWIGAAPAL 812 Query: 794 QIMMITDAGTLVRTRVSEISIVGRNTQGVIL-IRTAEDENVVGLQRVAEPVDEEDLDTID 852 + AG V R+ GV + R V+ P E+D + Sbjct: 813 A---ASRAGVARALPVEYGR---RDGSGVPMDQRIEAVGAGASPDLVSAPPAEDDAVAVS 866 Query: 853 GS 854 Sbjct: 867 AD 868 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 33/255 (12%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 + + + +G + +T + + G+ D V T+ E+ ++ Sbjct: 537 PDTACWALLSTSGRLLRTA--DRTPIAPQGRR----RKHDAFASVVPTTARGEIGALTSA 590 Query: 701 GKVVRFKESSVRAMGCNTTGVR---------GIRLGEGDKVVSLIVPRGDGAILTATQNG 751 G + R + + G + + L +G+ +V+L+ D + T +G Sbjct: 591 GALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL--DTVMALGTAHG 648 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC-DQIMMITDAGTLVRTRVS 810 KR +R V+ + VVGA D DQ++ +T G L+R S Sbjct: 649 VVKRVRPE--WPLNR---QVVDAVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAAS 703 Query: 811 EISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED----------LDTIDGSAAEGDD 860 + G GV IR A + V+ E + + E D Sbjct: 704 AVRPQGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVVVTVTDGEADV 763 Query: 861 EIAPEVDVDDEPEEE 875 + V P E Sbjct: 764 LGSAPGSVKVTPLGE 778 >UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myxococcales RepID=Q1D9G9_MYXXD Length = 813 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 275/784 (35%), Positives = 422/784 (53%), Gaps = 64/784 (8%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMN-VLGNDWNKAYKKSA 67 P ++ +E + Y++YA+SVI RALPDVRDGLKPV RR+L+ M Y+KSA Sbjct: 56 VPASLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSA 115 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 +VVG V+G+YHPHGD+++Y+ +VRMAQ FSLRY LVDG GNFGS+DGD AAAMRYTE RL Sbjct: 116 KVVGSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRL 175 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A ++ EL+ +L K+TV F YDGT + P V+P ++P LL+NG++GIAVGMATNIPPH+L Sbjct: 176 AMLSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHL 235 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 E+++ +A I++ + + L++ + GPDFPT I N ++ + + Y +G+G + IR Sbjct: 236 GELVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEY 295 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 ++E D K G + I++ IPY VNK+ L+ K +LV+E+++ I+ +RDES KD +RIV+E Sbjct: 296 KLE-DLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKD-VRIVLE 353 Query: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH-------GQPKIMNLKDIIAAFVRHRR 359 +K+DA E+V+ LY QT LQ +FG+N+ L P+ +NL+DI+ F+ R Sbjct: 354 LKKDANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRF 413 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 +VVT+R EL + R HILE +D +I++IR + +A L+A Sbjct: 414 DVVTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIAR------ 467 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L E Q AIL+++L KL LE + E K Sbjct: 468 ----------------------------FKLDEAQVDAILEMKLYKLARLEILVVEKELK 499 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA---NSADINLEDLITQ 536 E +I + IL +++ +R+EL ++ ++ DKRRT I + + E I Sbjct: 500 EKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYNDKRRTRIGGAGSEEMEFSAEAFIAD 559 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ED V ++ G+VK R K S R++E D + +L + +++ FS+ Sbjct: 560 EDAHVVITRDGWVKRV---------REVKDPSTTRLREGDAVMAVLAGSLKANLVLFSNF 610 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT-EFEEGVKVFMATANGTV 655 G Y + +P + G P+ + ER+ + L + K+ T G Sbjct: 611 GTAYVTRFNDVPAS--TGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKLVGVTKQGMG 668 Query: 656 KKTVLTE-FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714 + +L AG+ K +GDE+IGV + D + + + + + K + V + Sbjct: 669 MRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNEL 728 Query: 715 GCNTTGVRGIRLGEGDKVVSLIVPRG---DGAILTATQNGYGKRTAVAEYPTKSRATKGV 771 GV I++ GD+VV + D + TQ G + A+Y R KG Sbjct: 729 AGPGKGVTVIKVDGGDRVVDFLAVSPAQKDAKLEFETQKGRKLHLSPAKYEVTGRGGKGH 788 Query: 772 ISIK 775 K Sbjct: 789 EMSK 792 Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 16/209 (7%) Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 + T +G VK+ + L +GD ++ V S + ++LFS G Sbjct: 564 VVITRDGWVKRVREVKDPSTTR-------LREGDAVMAVLAGSLKANLVLFSNFGTAYVT 616 Query: 707 KESSVRAMGCNTTGV-RGIRLGEGDKVVSLIVPRGD----GAILTATQNGYGKRTAVA-E 760 + + V A V + + +G++VVS + ++ T+ G G R + Sbjct: 617 RFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKLVGVTKQGMGMRFLLEPH 676 Query: 761 YPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQ 820 +RA + T ++G V D D + ++T+ + + +V+E++ + + Sbjct: 677 LEVSTRAGRR---YAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNELAGPGK 733 Query: 821 GVILIRTAEDENVVGLQRVAEPVDEEDLD 849 GV +I+ + VV V+ + L+ Sbjct: 734 GVTVIKVDGGDRVVDFLAVSPAQKDAKLE 762 >UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=cellular organisms RepID=Q7V9E4_PROMM Length = 829 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 288/858 (33%), Positives = 465/858 (54%), Gaps = 62/858 (7%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + P+ + +E++ SYL+YAMSVIVGRALPD RDGLKPV RR+L+AM+ LG ++ Y+ Sbjct: 3 EERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 62 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARVVGDV+GKYHPHGD AVYD +VR+ Q FS R+ ++DG GNFGS+D D AAMRYTE Sbjct: 63 KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTE 122 Query: 125 IRLAKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RLA IAH L+ ++ +ETVDF N+DG+++ P V+P ++P LL+NG SGIAVGMAT+IP Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL EV++G +A I D+S + L+ IPGPDFPT I GI E Y GRG + +R Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMR 242 Query: 244 ARAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 A VE + R ++V E+PYQ++KA IEK+A+LV ++ GI+ +RDESD++ Sbjct: 243 GVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDRE 302 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 GMRIV+E++RDA E VL +L+ +T LQ +FG ++AL +GQP+ ++L+ ++ F+ +R Sbjct: 303 GMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYRE 362 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 V RRT L K + R ++E L AL + +I +I+ A A A+ L+ Sbjct: 363 LTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLM-------- 414 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 L E+QA A+L + L++LT LE L E K Sbjct: 415 --------------------------VQLDLNEKQADAVLAMPLRRLTSLEQSSLRQEAK 448 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE-------- 531 EL ++ +L +L + + ++EV+ +EL ++++F + RRT + D+ E Sbjct: 449 ELQEKQEQLQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDLVAERAANQRPN 508 Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLL-VANT 586 + ++ + L G + Q S+ + G+ A ++ + RL+ Sbjct: 509 AEVQRQQALSALPSDGRILIQQDSQVKVMSPQILGRLHLNEACKLSDGPSPARLILPIEP 568 Query: 587 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKV 646 +L ++ GRV ++ ++ G+ R + L + E + I P+ ++ + + Sbjct: 569 APRLLAVTNNGRVALVR-WEFAGQQPGSLERFLPGGL---EKETLINIFPLP-VDQNLSL 623 Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 + +++G K+ + E L +KL DG L + D+V+L S G+V+R Sbjct: 624 GLLSSDGRFKRLPIEEVMELSGRAATIVKLKDGVILKSAFICKANDDVILASNIGRVIRI 683 Query: 707 KESS--VRAMGCNTTGVRGIRLGEGDKVVSL--IVPRGDGAILTATQNGYGKRTAVAEYP 762 ++ + MG G +RL + VV P + +L AT+ G + V+ Sbjct: 684 NVNNDSMPLMGKLAQGPMTMRLLPEEMVVGAVSCPPNCESTVLLATRLGKFAKILVSSIR 743 Query: 763 TKSRATKGVISIKVTERNGLVVGAVQVDDCDQIM-MITDAGTLVRTRVSEISIVGRNTQG 821 R G I + + + + V + + ++++ +++ G R ++ + Sbjct: 744 ICQRGDLGEIGLTIKDSSRDQDRVVDICNGNRLVGLVSSQGRHGRIEAGKLELTIPIKPS 803 Query: 822 VILIRTAEDENVVGLQRV 839 + ++ ++E + L + Sbjct: 804 LNIVELKDNEEIQKLVPL 821 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Query: 736 IVPRGDGAILTATQNGYGKRTAVAEY-PTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ 794 + + ++ + +G KR + E RA +I + ++ A D Sbjct: 615 LPVDQNLSLGLLSSDGRFKRLPIEEVMELSGRAA----TIVKLKDGVILKSAFICKANDD 670 Query: 795 IMMITDAGTLVRTRV--SEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 +++ ++ G ++R V + ++G+ QG + +R +E VVG + Sbjct: 671 VILASNIGRVIRINVNNDSMPLMGKLAQGPMTMRLLPEEMVVGAVSCPPNCE 722 >UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firmicutes RepID=A9KS51_CLOPH Length = 748 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 292/781 (37%), Positives = 439/781 (56%), Gaps = 43/781 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M A I ++ EE+K+S+ +YAMSVI+ RA+PDVRDGLKPV RR+LY+M LG D Sbjct: 1 MKKEAENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPK 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K ++KSAR+VGD +GKYHPHGDS++YD +V M +P+S++ LVDG GNFGSIDGD AAAM Sbjct: 61 KPHRKSARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+ A L+ L+K V+FV N+D +EK P V+P +PNLL+NG++GIAVGMAT Sbjct: 121 RYTEARLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+PPHN +EVI G +AYID+ DI+ EGLM++IPGPDFPT I I Y TG G++ Sbjct: 181 NMPPHNPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSEDIRNIYETGEGRL 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDK 298 +RA+ E+E + GR+ I++ EIPY V NK +L+E + +L+K+K + I +RDES K Sbjct: 241 KVRAKTEIE-ASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSK 299 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+R+VIEVK+D E +LN LY +T ++ ++G+N++A+ QP + LK+++ FV + Sbjct: 300 EGIRVVIEVKKDRDIENLLNGLYKKTSMEDTYGVNLLAVKDQQPIVFKLKNLVGEFVSFQ 359 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 E+ T+ L KA R I++ L A ID IIE++R + + +AK L+ Sbjct: 360 EELYTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEI 419 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 N R TE+QA AIL + L KL GLE +L +E Sbjct: 420 NFKTEASRKKAA----------------KLDFTERQADAILAMPLSKLIGLEILRLHEEN 463 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 + LLD I + ILG+ L +VI+ L+ ++QF R T + AN + + ED Sbjct: 464 QSLLDSIEQYQSILGNKKELFKVIKSNLKEYKKQFNVPRHTVL-ANMEIAEYVEEVKVED 522 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + + + GY K + S +K+ ++ D + F+++G Sbjct: 523 IYILIDKFGYTKSVDNTSISR-------VSEDNLKD---FVHIVKMKNTDRLCLFTAQGN 572 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 +Y +K ++P+ +G I NL ++++E + I FE + T NG +K Sbjct: 573 MYQVKAEKIPKCKIKDKGTLIHNLCKVDKEEILLYIAFEDLFESQ--LLFTTKNGFIKLV 630 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGV------DLTSGEDEVMLFSAEGKVVRFKESSVR 712 EF R A KL + D ++ V +++ + +V+L + + + F + V Sbjct: 631 SGIEFETNRAM-ISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVS 689 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 + + GV+GI L + DKV V + GK + + + RA KG Sbjct: 690 ELKKTSKGVKGITLEKKDKVAFATVALPETEFF----EYQGKELSAKKVRNRKRAAKGQK 745 Query: 773 S 773 + Sbjct: 746 A 746 Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 81/219 (36%), Gaps = 22/219 (10%) Query: 636 PVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVM 695 V E + + G K T +R+ L D + + D + Sbjct: 514 YVEEVKVEDIYILIDKFGYTKSVDNTSISRVSED-----NLKD---FVHIVKMKNTDRLC 565 Query: 696 LFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRG--DGAILTATQNG 751 LF+A+G + + K + G L + ++++ I + +L T+NG Sbjct: 566 LFTAQGNMYQVKAEKIPKCKIKDKGTLIHNLCKVDKEEILLYIAFEDLFESQLLFTTKNG 625 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV------DDCDQIMMITDAGTLV 805 + K + E+ +RA IS E VV + + + +++++T+ + Sbjct: 626 FIKLVSGIEFE-TNRAM---ISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSL 681 Query: 806 RTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 ++E+S + + ++GV I + + V + Sbjct: 682 GFPLTEVSELKKTSKGVKGITLEKKDKVAFATVALPETE 720 >UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms RepID=C1N3Z1_9CHLO Length = 1082 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 289/800 (36%), Positives = 432/800 (54%), Gaps = 106/800 (13%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 I + E SYL YAMSVIVGRALPDVRDGLKPVHRR+LYAM+ LG D K Sbjct: 56 DATNERIIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKK 115 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KK ARVVG+V+GK+HPHGD +VYD +VRMAQ FS+ LVDG GNFGS+D D AAMR Sbjct: 116 PFKKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPPAAMR 175 Query: 122 YTEIRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 YTE RL +A + +AD++ + VDF + +DG++ P V+P ++PN+L+NGS+GIAVGMAT Sbjct: 176 YTECRLRSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMAT 235 Query: 181 NIPPHNLTEVINGCLAYIDDED-ISIEGLMEHIPGPDFPTAAIINGR---RGIEEAYRTG 236 +IPPHNL EV + Y D D +++ L++ +P PDFPT+ II +G + Y TG Sbjct: 236 SIPPHNLREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATG 295 Query: 237 RGKVYIRARAEVEVDA-------KTGRETIIVHEIPYQ-----------------VNKAR 272 +G V +R A +E T + +I+ IPYQ NKA Sbjct: 296 KGSVTLRGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKAS 355 Query: 273 LIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI 332 L +IA+LV ++++G+ +RDESD+DGMR+V+E++R V LY++T+LQV + Sbjct: 356 LCGQIADLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTRTRLQVRVSV 415 Query: 333 NMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP 392 N+V L +PK++ L DI+ F+ R E + RR EL KA R H++E A D Sbjct: 416 NLVGLIGREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPDA 475 Query: 393 IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTE 452 ++ IR A EA+ L P + L++ Sbjct: 476 VVAAIRAAKDGPEAQKTLQEAP---------------------------------FSLSK 502 Query: 453 QQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 512 +Q++A+L + L++LTGLEH+KL E +L ++ +L +L ++ + E + +R++ Sbjct: 503 EQSEAVLAMPLRRLTGLEHDKLRAEEADLTAKVEQLNALLSDRALVIAAVASEAKELRDK 562 Query: 513 FGDKRRTEITANSADINLEDLITQE----------------------------------- 537 +G +R+T I ++A + E + Sbjct: 563 YGVERKTLIDHSAAKLAAEVAEARRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLD 622 Query: 538 ----DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF 593 D ++ ++ +GY+K + Q +G GK R++ D + ++ N D +L F Sbjct: 623 SLDADNLIVMTGKGYIKRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFF 682 Query: 594 SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE-----GVKVFM 648 + RGRVY+++ Y +P+++ A G P +L L + E ITA+LPV G + M Sbjct: 683 TDRGRVYAVRAYDIPQSSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNVGEHLVM 742 Query: 649 ATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE 708 TA G VKKT ++EF + AGK A+ L GD L V+L D +M+ +G V+ F Sbjct: 743 LTARGVVKKTPISEFANINRAGKRALGLQKGDRLKHVELVRDGDGIMVAGVDGMVLHFSM 802 Query: 709 SSVRAMGCNTTGVRGIRLGE 728 S+RA +GV+ ++ E Sbjct: 803 DSIRAQSRIGSGVKAMKFRE 822 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 100/286 (34%), Gaps = 24/286 (8%) Query: 604 VYQLPEATRGA--RGRPIVNLLPLEQDERITAILPVTEFE------EGVKVFMATANGTV 655 ++ EA R + G ++ + + E A L + + + T G + Sbjct: 579 AAEVAEARRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLDSLDADNLIVMTGKGYI 638 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDG--DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA 713 K+ F+R D++ V +G D V+ F+ G+V + + Sbjct: 639 KRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRVYAVRAYDIPQ 698 Query: 714 MGCNTTGV---RGIRLGEGDKVVSLIVPRG--------DGAILTATQNGYGKRTAVAEYP 762 G R ++L EG+ + +++ ++ T G K+T ++E+ Sbjct: 699 SSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNVGEHLVMLTARGVVKKTPISEFA 758 Query: 763 TKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGV 822 +RA K + ++ + + V D D IM+ G ++ + I R GV Sbjct: 759 NINRAGKRALGLQ---KGDRLKHVELVRDGDGIMVAGVDGMVLHFSMDSIRAQSRIGSGV 815 Query: 823 ILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDV 868 ++ E ++ +P L D A + +V Sbjct: 816 KAMKFREASAGATEKKPKKPPAAHMLFAADARANAPEGTSYNMAEV 861 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 17/120 (14%) Query: 741 DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD------- 793 +L T G GKR +V ++ K R G +I + E G + A+ + D Sbjct: 964 GAMVLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEE--GSRLAAMCITGVDPALREAG 1021 Query: 794 -------QIMMITDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 ++++ + AG L R V+E+ +GRN +GV L++ + + V + + E Sbjct: 1022 DAECVAEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLPVDAVE 1081 Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 16/110 (14%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVDGDELIGVDLTSGE------------ 691 V + T+ G K+ + +F + G AI L +G L + +T + Sbjct: 967 VLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAECV 1026 Query: 692 -DEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVPR 739 +EV++ S G + R+ + +R G N GV+ ++L +GD V + + Sbjct: 1027 AEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLP 1076 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 14/99 (14%) Query: 694 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG----------- 742 V+L ++EG+ R R G G + I L EG ++ ++ + D Sbjct: 967 VLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAECV 1026 Query: 743 --AILTATQNGYGKRTAVAEYPTK-SRATKGVISIKVTE 778 ++ + G R V E + R KGV +K+ + Sbjct: 1027 AEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLND 1065 >UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma RepID=A5IXX2_MYCAP Length = 861 Score = 717 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 268/875 (30%), Positives = 453/875 (51%), Gaps = 47/875 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 ++DL +I N++ + + Y+ VI RALPDVRDGLKPV RR+LY+M LG N Sbjct: 9 LNDLLSKIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNN 68 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K +KKSARVVGDVIGKYHPHGD+++YD +VRM Q + + + LV+ GN GSID D AAAM Sbjct: 69 KPFKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAM 128 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+RL++IA+ ++ D+ K TV F N+D +EK P VMP IPNLL+NGS+GIA G AT Sbjct: 129 RYTEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFAT 188 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +PPHNL E+++ +A + + I + L + I GPDFPT II G GI EA+ G+G++ Sbjct: 189 EMPPHNLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGGIIYGTEGIHEAFERGKGRI 248 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + +R V D+K + I + EIPY V K++L+ +I +V + V G+ ++D++D++G Sbjct: 249 TLASRYNVYTDSKY--KYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNG 306 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+I + ++A V++N L+ +TQ+++ + N V + + PK + + ++ A+++H ++ Sbjct: 307 INILITLDKEADENVIVNYLFLKTQMRIYYNYNNVVIDNYTPKTLGISALLDAYLKHVKD 366 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + + F+L K + R I+ D +IE+IR + Sbjct: 367 IKIKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSK---------------- 410 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + + T QA AI +LRL KL+ + L E +E Sbjct: 411 -----------------QGVIDNLMSAFDFTLNQATAIAELRLYKLSKTDEHAFLIEKEE 453 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQED 538 L ++I + +L +D + + + ++ +FG RRT I IN EDL+ +E Sbjct: 454 LEEKIKQCELLLNDSDEFNKYLIALFKDLKSKFGRARRTSIENEQIKASINQEDLVKEEQ 513 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V + +S GY+K YE+ G IKE+D I A++ D +L F++ G Sbjct: 514 VFLGISKFGYIKKVSKKIYESNLINTYG-----IKEDDNILFYDNASSLDKLLLFTNFGN 568 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + V+++ E+ G + + + L E + + + V++F+ V + T G KK Sbjct: 569 YAYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVSAIKVSDFDSSNYVCLFTKKGQGKKV 628 Query: 659 VLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 +L EF+ R + VA+KL DELIG L++G +V+L + + E+ V G Sbjct: 629 LLKEFDVSRFSKTFVAMKLKSDDELIGAKLSNGLKDVLLITKNNFASLYSENEVPIYGLK 688 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 + G + L D++ + V + +++ N K V+E S+A KGV + Sbjct: 689 SNGNKACYLANYDELSAFAVVSSNDSVVLINANNRAKVVNVSEITKVSKANKGVALFAKS 748 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL-IRTAEDENVVGL 836 N + + +I+++ + G ++ + + + + + V + Sbjct: 749 RTNSPIKQCDSLQASSKILIVNNQGQAHFEKIQDYA---KAAYAKFINFDVDDLRTVSLI 805 Query: 837 QRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDE 871 + + + + D +A + + ++ + Sbjct: 806 SNYSSDSENSNTHSYDKESAVEEQIMNDAIETKNS 840 >UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphaproteobacteria RepID=A8LLG0_DINSH Length = 777 Score = 717 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 292/797 (36%), Positives = 421/797 (52%), Gaps = 50/797 (6%) Query: 1 MSDLAREI-----TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVL 55 M D E T + + + YL YA+S I+ RALPD RDGLKPVHRR+LYAM L Sbjct: 10 MDDPDAEEPGAAQTSEPLRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAMREL 69 Query: 56 GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 115 ++KSA++ GDV+G YHPHGD+A+YD + R+AQ F++RY LVDGQGNFG+IDGD Sbjct: 70 RLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 129 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 + AA RYTE RL A LM L + VDF DNYDGT P+V+P PNLL NGSSGIA Sbjct: 130 NPAASRYTEARLTAAAEALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIA 189 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYR 234 VGMATNIPPHNL E+I+GCL I + E L+E IPGPDFPT +I + I +AY Sbjct: 190 VGMATNIPPHNLHELIDGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYA 249 Query: 235 TGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRD 294 TGRG +RAR E D G+ I++ EIPYQV K++LIEKIA+L++ K+V ++ +RD Sbjct: 250 TGRGAFRLRARWARE-DLGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRD 308 Query: 295 ESDKDGMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIA 352 ES D +RI++E + ++ EV++ L+ ++L+ F +NM L G+ PK+ +L++++ Sbjct: 309 ESADD-VRIILEPRSKNVDPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLR 367 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 AF+ HRR+V+ RR+ L K R +LE VA N+D +I++IR+ P A L+ Sbjct: 368 AFLDHRRDVLGRRSRHRLAKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAA---LMR 424 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 W L +V A E A E LTE QA+AIL++RL+ L LE Sbjct: 425 EDWSLKHVRATDEADYKTPAPGEGE------------LTEVQAEAILNMRLRSLRRLEEM 472 Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD-----KRRTEI--TANS 525 +L+ E L+ + AEL +L I +EL VR+QFG KRRT+ Sbjct: 473 ELISERDALMAERAELEDLLADEALQWARIADELREVRKQFGKGTALGKRRTDFAVATEM 532 Query: 526 ADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585 A+++LED+I +E + V S G+++ Q A + K+ D + A Sbjct: 533 AEVSLEDMIEREPITVVCSKMGWIRAMKGHVALDQ--------ALKFKDGDEGRFIFHAE 584 Query: 586 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK 645 T D +L F + GR Y++ LP G PI ++ L + + + G + Sbjct: 585 TTDKLLAFGANGRFYTLSCAALPGGR--GMGEPIRLMVDLPNEAELVDLFL---HVPGRR 639 Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 + +A+ G TE GK + + + +G D + K++ Sbjct: 640 LIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPVAG-DAIAAVGENRKLLV 698 Query: 706 FKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT--AVAEYPT 763 F + MG GVR + +G + L + G + + Sbjct: 699 FAADELPEMGR-GKGVRLQKYKDG-GLSDLRSFDRAQGLQWLDAGGRTRTVADPELAEWS 756 Query: 764 KSRATKGVISIKVTERN 780 RA G ++ + R+ Sbjct: 757 GKRAGTGRMAPRGFPRD 773 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 74/523 (14%), Positives = 162/523 (30%), Gaps = 43/523 (8%) Query: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 R F LR R + + I I ++ + + + + Sbjct: 252 RGAFRLRARWAREDLGRGQWQIV--ITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDE 309 Query: 425 ERAGDDAARPEWLEPEFGV--RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + L+ L+E + + L++ + L K+ + L Sbjct: 310 SADDVRIILEPRSKNVDPEVLMGTLFRLSELETRFSLNMNV--LIDGRTPKVCSLREVLR 367 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVT 542 + +LG R + V E F DI D + ++ Sbjct: 368 AFLDHRRDVLGRRSRHRLAKIDHRLEVLEGFLVA--FLNLDRVIDIIRYDEDPKAALMRE 425 Query: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSA--------ARIKEEDFIDRLLVANTHDHIL--- 591 +V+ ++Y+ G + R++ ++ + + + D ++ Sbjct: 426 DWSLKHVRATDEADYKTPAPGEGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAER 485 Query: 592 -----CFSSRGRVYSMKVYQLPEATRG-ARGRPI-VNLLPLEQDERITAILPVTEFEEGV 644 + ++ +L E + +G + + + E Sbjct: 486 AELEDLLADEALQWARIADELREVRKQFGKGTALGKRRTDFAVATEMAEVSLEDMIEREP 545 Query: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVV 704 + + G ++ A+K DGDE + D+++ F A G+ Sbjct: 546 ITVVCSKMGWIRAMKGHVALD------QALKFKDGDEGRFIFHAETTDKLLAFGANGRFY 599 Query: 705 RFKESSVRAMGCNTTG--VRGI-RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY 761 +++ G G +R + L ++V L + ++ A+ G G E Sbjct: 600 TLSCAALP--GGRGMGEPIRLMVDLPNEAELVDLFLHVPGRRLIVASDAGDGFIVPETEV 657 Query: 762 PTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQG 821 ++R K V+++K + A V D I + + L+ E+ +GR +G Sbjct: 658 LAQTRTGKQVLNVKSP---HRALLARPVA-GDAIAAVGENRKLLVFAADELPEMGR-GKG 712 Query: 822 VILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAP 864 V L + + + L+ + LD + D E+A Sbjct: 713 VRLQKYKDGG-LSDLRSFDRAQGLQWLDAGGRTRTVADPELAE 754 >UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Actinomycetales RepID=D1BTH4_XYLCX Length = 855 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 297/878 (33%), Positives = 435/878 (49%), Gaps = 102/878 (11%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +I +++ E++SS+L+YA SVI RALPD RDGLKPV RR+LY M +G ++ Y Sbjct: 14 DEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMADMGLRPDRPYV 73 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KS+RV+G+V+GK HPHGD A+YD +VR+AQ FSLR LVDG GNFGS+D D AA RYTE Sbjct: 74 KSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLD-DGPAAPRYTE 132 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLA + + A L+++ VDFV NYD P+V+P+ IPNLLVNG+SGIAVGMATN+ P Sbjct: 133 ARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGIAVGMATNMAP 192 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EV+ + + ++E +M +PGPD PT I G GI +AYR+GRG RA Sbjct: 193 HNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIVGLDGIRDAYRSGRGTFRTRA 252 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD-GMRI 303 A +E R I + E+PY V +++EKIA+ VK K+++G++ ++D +D+ GMR+ Sbjct: 253 TARIENITPR-RRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDLTDRTHGMRL 311 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 V+EVK E VL LY T L+ SFGIN VAL GQP+ + L +++ +V HR EVV Sbjct: 312 VVEVKTGFDPEAVLEQLYRTTPLEDSFGINNVALVGGQPRTLGLLELLRVWVEHRIEVVR 371 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RRT + L K ++R H++E L +A+ +ID +I++IR + A+ L+ Sbjct: 372 RRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLM------------ 419 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 ++ L+E QA ILDL+L++LT +L E EL Sbjct: 420 ----------------------DVFDLSEPQATYILDLQLRRLTKFSRIELEKEQSELEK 457 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI--------------- 528 +IA L ILGS L V+ E+ V +G RRT + ++ Sbjct: 458 EIAALEEILGSDAVLRRVVSTEMGDVAATYGTPRRTVLLDSAGGATTSAAAAPGGARGRK 517 Query: 529 --NLEDLITQEDVVVTLSHQGYVK----------------YQPLSEYEAQRRGGKGKSAA 570 + I V LS G + L G G S A Sbjct: 518 PAEISLEIADAPTHVLLSATGLLARTAVAPAAAPTASEGDQLDLDGVALGAPGAPGASGA 577 Query: 571 RIK-----EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG------ARGRPI 619 + D + ++ + I ++ GR+ + +LP + G P+ Sbjct: 578 VSRHGRRHAHDALRGDVMTTSRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSGGIPV 637 Query: 620 VNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 679 L+ L E A++ + ++ + + TA G VK+ ++ + I L DG Sbjct: 638 SELVELAPGEEALAVVSL--ADDAPTLALGTAGGVVKRVAASDVPSNKDE-WTVIGLKDG 694 Query: 680 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV-- 737 D ++G +DEV+ S++ ++ + S+VR G G+ GI L G VV V Sbjct: 695 DSVVGAAPAGDDDEVVFISSDSSLLHYAASAVRPQGRAGGGIAGISLAAGQTVVFFGVAR 754 Query: 738 --PRGDGAILTAT---------QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786 R + ++T G K T YP K RAT GV S + + +V A Sbjct: 755 AAVRPELTVVTVGGSAGQLPGVGGGSVKVTPYELYPGKGRATGGVRSHRFLKGEDRLVLA 814 Query: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL 824 + AG V + R+ G L Sbjct: 815 WV--GEGPARAVGGAGQPVELPAPDHR---RDGSGTPL 847 Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 15/205 (7%) Query: 680 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN------TTGV---RGIRLGEGD 730 D L G +T+ ++ L + G+++R + ++ + G+ + L G+ Sbjct: 588 DALRGDVMTTSRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSGGIPVSELVELAPGE 647 Query: 731 KVVSLIVPRGDGAILTA-TQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV 789 + ++++ D L T G KR A ++ P + K ++ + VVGA Sbjct: 648 EALAVVSLADDAPTLALGTAGGVVKRVAASDVP----SNKDEWTVIGLKDGDSVVGAAPA 703 Query: 790 DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLD 849 D D+++ I+ +L+ S + GR G+ I A + VV VA +L Sbjct: 704 GDDDEVVFISSDSSLLHYAASAVRPQGRAGGGIAGISLAAGQTVVFFG-VARAAVRPELT 762 Query: 850 TIDGSAAEGDDEIAPEVDVDDEPEE 874 + + G V P E Sbjct: 763 VVTVGGSAGQLPGVGGGSVKVTPYE 787 >UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicutes RepID=Q2SS33_MYCCT Length = 899 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 282/822 (34%), Positives = 441/822 (53%), Gaps = 53/822 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSD + I +EE L + + YA +I RALPDVRDGLKPV RR+LYAMN L ++ Sbjct: 1 MSDKSE-IILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFD 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVG+VIGKYHPHGDS++YD +VRM+Q + + LVD QGN GSIDGDSAAAM Sbjct: 60 KPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAM 119 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL KI++ L+ DLEK+TV F N+D +E P V+P+ PN+LVNG++GIA G AT Sbjct: 120 RYTEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYAT 179 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 N+PPHNL+E+I+ + I + +I+I+ +++ + GPDFPT AII ++GI EA+ TG+GKV Sbjct: 180 NMPPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKV 239 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I ++ E + I++ EIPY+V K L++KI +++ GI +RDE+D+ G Sbjct: 240 IISSKWHQE------KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKG 293 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RIVIE+ A E V L+ T L VS+ N + + QPK + L DII A++ H +E Sbjct: 294 LRIVIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKE 353 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V +RT F L K R I++ L AL+ +D +I++IR + +A LV Sbjct: 354 VFIKRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLV--------- 404 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + T Q+ AI+D+RL +LT + KLL E E Sbjct: 405 -------------------------ISFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTE 439 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQED 538 L+D+I + IL L I LE V++QFG KR++++ D++ +++I +++ Sbjct: 440 LIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKE 499 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + + +S GY+K + GK K D V + DH++ S + Sbjct: 500 INLWISKDGYIKVIDNNILNKNELSSFGK-----KPNDMWISQGVCSNLDHLILISDQAN 554 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF-EEGVKVFMATANGTVKK 657 YS+ +Y++ + +G I ++ + +E I L + EF + + T NG +K+ Sbjct: 555 YYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEFINSTQHLLLVTKNGLIKR 614 Query: 658 TVLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMG 715 T +++ +K+ D D L+ DL S + + + G VR+ + Sbjct: 615 TQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIVTKNGYAVRYNIEDIPIQS 674 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 + GV+ L D+++S + + + I+ T K+ P R KG+ + Sbjct: 675 TISKGVKAANLK-DDQIISALSLQTNKDIIIFTNKNNYKKIDQNLIPIYIRPKKGIRILV 733 Query: 776 VTERN-GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVG 816 ++N V+ + ++ + ++ + V ++ Sbjct: 734 EKKKNKEEVIFSFAINKEMILSILDQNDQITDINVDDLKYTN 775 Score = 80.0 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 81/235 (34%), Gaps = 20/235 (8%) Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG 670 R ++ +V L ++Q E I E + +G +K + N L Sbjct: 475 KRKSQVEDLVEDLDVDQKEVII---------EKEINLWISKDGYIKVI---DNNILNKNE 522 Query: 671 KVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV---RGIRLG 727 + D I + S D ++L S + + GV Sbjct: 523 LSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQ 582 Query: 728 EGDKVVSLIVP----RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 + +++ +V +L T+NG KRT +++ K +K+++ + LV Sbjct: 583 PNETIINALVIKEFINSTQHLLLVTKNGLIKRTQISDLE-TKIFNKSFKIMKISDDDSLV 641 Query: 784 VGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + ++T G VR + +I I ++GV +D+ + L Sbjct: 642 YADLISSKTSYCCIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKDDQIISALSL 696 >UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7D2_9CAUL Length = 737 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 274/781 (35%), Positives = 408/781 (52%), Gaps = 65/781 (8%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 I +E L YL YA+S I RALPDVRDG KPVHRR+LYAM+ + + A +K Sbjct: 12 RIIDEPMETALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKC 71 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A+VVG+V+G YHPHGD+++Y+ +VR+AQ F+ RY LVDGQGNFG+IDGDSAAAMRYTE + Sbjct: 72 AKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECK 131 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L A L+ +++++VDF YD ++ P V+P PNLL NGSSGIAVGMAT+IPPHN Sbjct: 132 LTPAAVLLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHN 191 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRAR 245 + E+I+ C +D + + L++ +PGPDFPT + + G I +AY TGRG V +RAR Sbjct: 192 VGELIDACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRAR 251 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E E D G IIV E+PYQV K+RLIE +A+L++ K+ + +RDES +D +R+++ Sbjct: 252 WETE-DLGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAED-IRLIL 309 Query: 306 EVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVT 363 E K R E+++ +L+ + L+V F INM L G P++M LK + AF+ HRREV+ Sbjct: 310 EPKNRTIEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLN 369 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ + + + R H+LE L + NID +I ++R P K L+A Sbjct: 370 RRSQWRIARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQP---KAVLIAR---------- 416 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + LTE QA ILD RL++L LE + E+K L + Sbjct: 417 ------------------------FGLTEVQADFILDTRLRQLARLEEMTIEKEFKALSE 452 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD---INLEDLITQEDVV 540 ++A L + S + + I +ELE VR+ RRT I + E I +E + Sbjct: 453 ELAHLQALTSSEGKQWKAISKELEAVRKALISPRRTTIADAVDTSAFVAPEAFIPREAIT 512 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 V LS +G+++ + S + KE D + L+ A T D +L +S GR++ Sbjct: 513 VILSERGWIRAAKGK--------VEDPSELKFKEGDQLAYLVPAYTTDKLLVGASDGRIF 564 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 ++ +L G P+ ++ L++ I +L + G K+ +A+ G Sbjct: 565 TIGADKLASGR--GHGEPLRLMIDLDEKAEIINVLA---HQPGGKLLIASKAGYGFIAPE 619 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 + + GK + GD L + + T D V K + F + MG Sbjct: 620 DDTLAQKRGGKQVLN---GDMLAMLRIPQTPTADHVATIGENIKTLIFPLDELPEMGR-G 675 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 GVR +G + + V + A G + + RA G + Sbjct: 676 KGVRLQNFKQG-GLADVTVFNAEQGPEWADGGGRRRNWPDWKDWLGKRAGAGRQGPRGLR 734 Query: 779 R 779 + Sbjct: 735 K 735 Score = 85.8 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 67/452 (14%), Positives = 154/452 (34%), Gaps = 34/452 (7%) Query: 405 EAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVR---DGLYYLTEQQAQAILDL 461 EA L+ + E A D E + L+ L++ + + +++ Sbjct: 280 EALADLIEHKKAPLLGDVRDESAEDIRLILEPKNRTIEPEMLMESLFKLSDLEVRFPINM 339 Query: 462 RLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI 521 + L +++ L + +L + + R E + + + Sbjct: 340 NV--LDADGTPRVMGLKACLRAFLDHRREVL-NRRSQWRIARVE----KRLHLLEGLRIV 392 Query: 522 TANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL 581 N ++ ++ V ++ G + Q + + R I++E Sbjct: 393 FLNIDEVIRIVREEEQPKAVLIARFGLTEVQADFILDTRLRQLARLEEMTIEKEFKALSE 452 Query: 582 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF- 640 +A+ SS G+ + +L EA R A P + D T+ E Sbjct: 453 ELAHLQA---LTSSEGKQWKAISKEL-EAVRKALISPRRTTIADAVD---TSAFVAPEAF 505 Query: 641 -EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSA 699 + + G + + + +K +GD+L + D++++ ++ Sbjct: 506 IPREAITVILSERGWI-RAAKGKVEDPSE-----LKFKEGDQLAYLVPAYTTDKLLVGAS 559 Query: 700 EGKVVRFKESSVRAMGCN-TTGVRG-IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTA 757 +G++ + A G +R I L E ++++++ + G +L A++ GYG Sbjct: 560 DGRIFTIGADKL-ASGRGHGEPLRLMIDLDEKAEIINVLAHQPGGKLLIASKAGYGFIAP 618 Query: 758 VAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGR 817 + + R K V++ + ++ Q D + I + + + E+ +GR Sbjct: 619 EDDTLAQKRGGKQVLNGDML----AMLRIPQTPTADHVATIGENIKTLIFPLDELPEMGR 674 Query: 818 NTQGVILIRTAEDENVVGLQRVAEPVDEEDLD 849 +GV L + + + E D Sbjct: 675 -GKGVRLQNFKQGG-LADVTVFNAEQGPEWAD 704 >UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SLW9_9CAUL Length = 738 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 282/783 (36%), Positives = 416/783 (53%), Gaps = 62/783 (7%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D I + E L YL YA+S I+ RALPDVRDGLKPVHRRVLYAM+ + + A Sbjct: 8 DEGGRILSEPMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAA 67 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 +KSA+VVG+V+G +HPHGD ++YD +VRMAQ F+ RY +VDGQGNFG+IDGDSAAAMRY Sbjct: 68 ARKSAKVVGEVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDGDSAAAMRY 127 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE ++ A L+ +++ VDF YDG ++ P V+P PNLL NG++GIAVGMAT+I Sbjct: 128 TECKMTTAAMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSI 187 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVY 241 PPHN+ E+I+ C I + + GLM IPGPDFPT I + R I EAY TGRG V Sbjct: 188 PPHNVAELIDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVR 247 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 +RAR EVE D G I+V EIPYQV K+RLIE++A+L++ K+ + +RDESD++ + Sbjct: 248 VRARYEVE-DLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEE-V 305 Query: 302 RIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLKDIIAAFVRHRR 359 R+++E K R+ EV++ +L+ + L+ F NM L G P++M LK I+ +F+ HRR Sbjct: 306 RLILEPKTRNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRR 365 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 EV+ R++ + L K R H+L+ L +A N+D +I +IR TP K L+A Sbjct: 366 EVLIRQSQWRLDKIEKRLHVLDGLMIAFLNLDEVIRIIREDETP---KQTLMAR------ 416 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + LTE Q ILD RL++L LE + E+ Sbjct: 417 ----------------------------FELTEVQVDYILDTRLRQLARLEEMAIKGEHD 448 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLED---LITQ 536 +L + LL +LGS + + I E+L VR+Q RRT + + + + Sbjct: 449 KLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQLLSARRTTFAEAPQGVEVAAIESYLPK 508 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 E + V LS +G+++ S + KE D + L+ D +L +S Sbjct: 509 EALTVILSERGWIRATKGR--------VDDPSELKFKEGDNLGFLVPGYNTDKLLIMTSD 560 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 GR +++ +LP G P+ +L +E++ RI + F G K M + NG Sbjct: 561 GRFFTLGCDKLPSGR--GHGEPLQLMLEMEENTRIVNVF---MFTPGAKRLMVSKNGYGF 615 Query: 657 KTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 + + AGK + DG E +G D V++ KV+ + S + M Sbjct: 616 VMNEEDAVGNKKAGKSVLN-ADGTEAFVALPVTG-DHVVILGENNKVLVYPVSELPEMAR 673 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKV 776 GV+ +G V + + G + +G + + RA+ G ++ + Sbjct: 674 -GKGVKLQGYKDG-GVKDIAIFDQAGPVQWFDGSGKARDFKDWKDFVGKRASVGKMAPRG 731 Query: 777 TER 779 + Sbjct: 732 LRK 734 >UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family protein n=37 Tax=Clostridium RepID=Q0SRA9_CLOPS Length = 979 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 314/854 (36%), Positives = 472/854 (55%), Gaps = 76/854 (8%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I + +EE + +YL YA+ V RALPDVRDGLKPVHRR+LY +L +K Y Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+VGD++GKYHPHGDS+VYD +V +AQ FS R L+DG GN+GSIDGD AAAMRYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL+ I+ E++ D+EK VD V NY +E P V+P + PNLLVNG+ GIAVG++TNIPP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL EVI+G LAYID+ +I+ LM +I GPD PT ++ G + + AY TG GKV +RA Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLRA 250 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKR----VEGISALRDESDKDG 300 +A++E + GR I++ E PY+ NKAR+++ I+++ +KR ++GI +RDESD+ G Sbjct: 251 KAKIET-LENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 301 MRIVIEVKRDAV---GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH 357 +R VIE K+ + VL LY +T LQ + NMVAL G+P+ M LK II+ +V H Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 +++VVTRRT EL A R HI+E A+ +D +I IR + + +A LV Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVLK---- 425 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + T+ QA+AIL+L L +LTGLE + E Sbjct: 426 ------------------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKE 455 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLIT 535 +KEL +I L +IL + L+ VI++EL+ V E +GD+RRT + + ++ I+LE+LI Sbjct: 456 HKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEELIV 515 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 EDV+VTLS++G++K PL Y R ++ +E D++ L+ +NT D + F+ Sbjct: 516 AEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTD 572 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLP--LEQDERITAILPVTEFEEGVKVFMATANG 653 +G VY +K + + +G + +L+ +DE+I A+ + F TANG Sbjct: 573 KGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANG 632 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE---VMLFSAEGKVVRFKESS 710 +KKT L +F + +AIKL + D L V L +DE V + + G E Sbjct: 633 LIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPE 691 Query: 711 VRAMGCNTTGVRGIRLGEGDKVVSLIVPRG---DGAILTATQNGYGKRTAVAEYPTKSRA 767 + N GV+ + L G+++ S+ I+ + G K + + + Sbjct: 692 LEFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEK- 750 Query: 768 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 V+V+ I+ ++ G + + + + ++ Sbjct: 751 -------------------VKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGF 791 Query: 828 AEDENVVGLQRVAE 841 +DE ++ + + E Sbjct: 792 EKDELIIKVAPINE 805 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 158/477 (33%), Gaps = 54/477 (11%) Query: 374 RDRAHILEA---LAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 + E + +N + + T + K VA+ + + Sbjct: 544 ENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGL 603 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 + E + + + L + + I L K T L+ K + Y +L+ + Sbjct: 604 SLEDEKIIALESIENF---LPNKCFKFITANGLIKKTTLD--KFVTAYSKLMAIKLKNDD 658 Query: 491 ILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK 550 +L S + E + G + ++ D +V L +K Sbjct: 659 LLASVSLIDSQDEERFVEIETTNGLN----FVVSEPELEFTDRNILGVQLVPLKSGNQIK 714 Query: 551 YQP-LSEYE----AQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 + YE KG + N+ +I+ FS++G+V+ Y Sbjct: 715 SIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAY 774 Query: 606 QLPEATRGARGRPIVNLLP-LEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLT 661 L I +L+ E+DE I + P+ EF E + V+ + G VKKT L Sbjct: 775 LLQNTEESN----ISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLR 830 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 EF DEL+ VD+ V+L + G ++F +++ MG +GV Sbjct: 831 EFLGEFNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFLATAINPMGRIASGV 890 Query: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781 GI L + +KV+ V I K + + ++ Sbjct: 891 TGISLKDDNKVIFGKVIPPSEGID----------------------DKTLEAYNDYKK-- 926 Query: 782 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 + +++++ + + +I + R +G L+ ++ + + Sbjct: 927 -----ELTSNYEKLVLESKQKEKAEVNIEDIKLQNRAGRGSSLMILVLEDYIRDVII 978 >UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rhodothermaceae RepID=Q2S2H4_SALRD Length = 777 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 273/804 (33%), Positives = 416/804 (51%), Gaps = 88/804 (10%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNV-LGNDWNKAYKKSA 67 + + E + YL+YA+SVI RALPD+RDGLKPV RR+L+AM L +K ++KSA Sbjct: 5 ETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSA 64 Query: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 VVG+ +GKYHPHGD A+YD +VRMAQ FSLR LVDG GNFGS+DGDSAAAMRYTE +L Sbjct: 65 TVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKL 124 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 +A E++ L ETVD+ DN+DG+ + P V+P ++PNLLVNG+SGIAVGMATNIPPHNL Sbjct: 125 QPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNL 184 Query: 188 TEVINGCLAYIDDEDISIEGLM-EHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIRAR 245 EV++ L I++ ++ L+ +HI GPDFPT I + E Y TG G + +R Sbjct: 185 GEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGA 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 + G+ I+ +PY V+K++++E+IA+ + E+ V +S +RDES D +RIV+ Sbjct: 245 YRTK-----GKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDD-VRIVL 298 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH------GQPKIMNLKDIIAAFVRHRR 359 E+KR + E + L+ T+LQ F +N+ L PK ++L+ I+ F+ R Sbjct: 299 ELKRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 +VVTRR EL + R HILE +D IE+IR + A+A L+ Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR------ 412 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L E+Q AIL+ +L KL+ +E E + DE Sbjct: 413 ----------------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELG 444 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADIN--LEDLITQE 537 E + + R+L D ++++EL+ +R+++ D+RR+ + AD+ ED I E Sbjct: 445 EKRARAEGIRRLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPGADMEYTEEDYIVDE 504 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 DV V ++ G+VK Q A R ++ D + L +T + F++ G Sbjct: 505 DVHVIVTRDGWVKRQGTYS---------DLDAIRTRDGDEVGWALAGSTRATVGFFTNYG 555 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE------------------ 639 Y+ ++ ++P G P+ L + E + ++ + Sbjct: 556 TCYTTRITEIPST--TGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELF 613 Query: 640 ------FEEGVKVFMATANGTVKKTVLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGED 692 + V + G + L + + G+ ++L DGDE+ V L G++ Sbjct: 614 DPDDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDE 673 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTA-TQNG 751 + L S +G+ + F V GVR IRL + D+V+ + LT T NG Sbjct: 674 NICLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDRVLDFALSTRARDGLTVETNNG 733 Query: 752 YGKRTAVAEYPTKSRATKGVISIK 775 + ++ +R KG + IK Sbjct: 734 REEIVRTTKFDATNRGAKGTLVIK 757 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 77/256 (30%), Gaps = 42/256 (16%) Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 + T +G VK+ + + AI+ DGDE+ S V F+ G Sbjct: 508 VIVTRDGWVKR-------QGTYSDLDAIRTRDGDEVGWALAGSTRATVGFFTNYGTCYTT 560 Query: 707 KESSVRAMGCNTTGV-RGIRLGEGDKVVSLIVPRG------------------------- 740 + + + + V + +G+ VV ++ Sbjct: 561 RITEIPSTTGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDPDDPDA 620 Query: 741 --DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI 798 ++ ++ G R + Y + E V + I + Sbjct: 621 PDQPYVVAISKGGQATRFTLDGYL--EPSISTGRKYMRLEDGDEVARVHLARGDENICLA 678 Query: 799 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEG 858 + G + V ++S+ +GV IR +++ V+ D ++T + G Sbjct: 679 SHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDRVLDFALSTRARDGLTVETNN-----G 733 Query: 859 DDEIAPEVDVDDEPEE 874 +EI D Sbjct: 734 REEIVRTTKFDATNRG 749 >UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pulmonis RepID=Q98QI8_MYCPU Length = 939 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 243/780 (31%), Positives = 416/780 (53%), Gaps = 43/780 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + ++ ++++ + + Y+ +I RALPD RDGLKPV RR+LY+M L +K Sbjct: 10 EQINEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLKLWNDK 69 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSAR+VGDVIGKYHPHGDS++Y+ +VRMAQ + + L+ GN GSID D AAAMR Sbjct: 70 PFKKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSIDDDPAAAMR 129 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RLA+I++ ++ +EK V F N+D +EK P V+P IPNLL+NG+ GIA G AT Sbjct: 130 YTESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFATE 189 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 +PPHNL E+++ +A I + +E L+++I GPDFPT +I+G GI +A++ GRG++ Sbjct: 190 MPPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGGVIHGLSGIVQAFKEGRGRIS 249 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 + + E + I++ +IPY K++++ I E++ ++++GI + D+SD+DG+ Sbjct: 250 LTCKY--EHINLPDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRDGI 307 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 I I++++ A E ++ L+S+T+LQV + N +A+ +G P ++NL +++ ++ H + + Sbjct: 308 SIAIKLEKKANHESIMKYLFSKTELQVFYNYNNIAIKNGSPTLLNLNELLDIYIEHLKTI 367 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 + F+L KAR R ++E D II IR + Sbjct: 368 NVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGK----------------- 410 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + ++ +++QA AI +LRL +L+ + +E +EL Sbjct: 411 ----------------KGVIEDLIRIFAFSQRQATAIAELRLYRLSQTDFYLYQNEKEEL 454 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDV 539 + QI + +IL S + L + L+ +++ + R+T+I ++E+L+ E Sbjct: 455 IKQINDFEKILNSDNELKTYLVNILKKIKKTYPTPRKTQIIDEELKRNYDIEELVVDEKC 514 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V+LS GY+K ++ G +KE D + L A T D +L FS G Sbjct: 515 YVSLSQDGYLKRVSSKTFKTNDFASFG-----LKENDNLSFLSKATTKDKLLIFSDHGNY 569 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 + +Y++ E + G I + + E+I +L V EF + + + T G K+ Sbjct: 570 AIIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNEFSQDYYISLVTQKGLGKRVS 629 Query: 660 LTEFNRLRTAGK-VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 L +F R + AI L D D L+ V ++ G+ ++LF+ VV+F E ++ + Sbjct: 630 LNKFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSEDALPVISTKG 689 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 G + I+L EG+KV ++ + + ++ T + + + RA KG + + Sbjct: 690 QGNKMIQLSEGEKVSAMSITKTTDNLILITNKNNLIKVPTSHFKFTPRAAKGKRISEELK 749 >UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula baltica RepID=Q7UU73_RHOBA Length = 825 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 283/813 (34%), Positives = 426/813 (52%), Gaps = 65/813 (7%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 L EI + + + YL+Y++SVI RALPDVRDGLKPV RRVLY M++L D + Sbjct: 25 ESLLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSA 84 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 + K A+VVGDV+GKYHPHGDS++Y+ +VRM+Q FSLR ++DG GNFGSIDGD+AAAMR Sbjct: 85 KHSKCAKVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMR 144 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE R+ IA E++ADL TV F NYDGT + P V+P+++P+LLVNG++GIAVGMATN Sbjct: 145 YTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATN 204 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLM--EHIPGPDFPTAAIING-RRGIEEAYRTGRG 238 IPPHNL EV N L + + +I L+ + I GPDFPT I + + E Y TG G Sbjct: 205 IPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTG 264 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 + +R AEV ++TG T+ + EIP+ VNKA ++E+IAELV ++ + +RD S + Sbjct: 265 TIKLRGVAEVAEKSRTGD-TLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTE 323 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH------GQPKIMNLKDIIA 352 D +R+ + +K++A + VL LY T LQ +F +N+ L G PK + LK+I+ Sbjct: 324 D-IRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILW 382 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 F+ R +V+T R ELR R HILE LA+ +D II++IR + A+A ++ Sbjct: 383 YFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMK 442 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 A R + L +Q AIL+L+L +L LE Sbjct: 443 RFPVKELTPAQARRKTRASN----------------GLDAEQTDAILELKLYRLARLEIN 486 Query: 473 KLLDEYKELLDQIAELLRILGSADR------LMEVIREELELVREQFGDK----RRTEIT 522 +LDE K+ ++ E+ ++L +I+EEL+ + +G+ RR+ I Sbjct: 487 VVLDELKKKRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIV 546 Query: 523 ANSADIN--LEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDR 580 + ++ ED I ED V ++ G+VK Q S +R+++ D + Sbjct: 547 VPTEEVEYTEEDFIVAEDCHVMVTVDGWVKRQK---------QIADPSKSRLRQGDAVLA 597 Query: 581 LLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT-- 638 + NT + FSS G Y+ ++ +P + G PI L + ERI A L + Sbjct: 598 CVAGNTRTTLAFFSSLGVCYTARMIDIPAS--TGFGEPIQKLFKFKDGERIIAALSMDPR 655 Query: 639 -----------EFEEGVKVFMATANGTVKKTVLTEF-NRLRTAGKVAIKLVDGDELIGVD 686 + A+ +G + L F AG+ ++ G ++ V Sbjct: 656 ILGDISEDPKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVV 715 Query: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAIL- 745 +G + V+ SA+ + + + + GV ++L DK++ GD +L Sbjct: 716 PIAGTETVLAVSADARAMVCPADEINYLSGAGKGVLLLKLAASDKLLGFKPSTGDRDLLN 775 Query: 746 TATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 T G K + A+Y T SR +G+ K + Sbjct: 776 VVTNRGAKKTVSTAKYRTTSRGGRGIELQKNGK 808 >UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphaproteobacteria RepID=A3VFM2_9RHOB Length = 856 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 271/764 (35%), Positives = 410/764 (53%), Gaps = 61/764 (7%) Query: 2 SDLAREITP--VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDW 59 D I+ + + YL YA+S I+ RALPD RDGLKPVHRR+L+AM L + Sbjct: 45 DDPDNPISEFAEPLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLNS 104 Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 119 ++KS+++ GDV+G YHPHGD+A+YD + R+AQ F++RY LVDGQGNFG+IDGD+ AA Sbjct: 105 GGRFRKSSKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAA 164 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 RYTE R+ +A L+ L+++ VDF +NYDGT + P V+P P+LL NG++GIAVGMA Sbjct: 165 SRYTEARMTIVAEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGAAGIAVGMA 224 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRG 238 TNIPPHN++E+++ CL I D + L+ +IPGPDFPT +I R I EAYRTGRG Sbjct: 225 TNIPPHNISELVDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAEAYRTGRG 284 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 + +R++ EVE D G+ IIV EIPYQV K++LIEK+AE+++ K+V ++ +RDES Sbjct: 285 SIRLRSKWEVE-DLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDESAD 343 Query: 299 DGMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHG-QPKIMNLKDIIAAFVR 356 D +RIV+E K R+ E+++ L+ + L+V F +NM L G PK+ +LK+++ AF+ Sbjct: 344 D-VRIVLEPKTRNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVLRAFLD 402 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 RREV+ RR+ + K R +LE +A N+D +I++IR+ P A L+ W Sbjct: 403 FRREVLIRRSQHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMYEDWS 459 Query: 417 LG---------------------NVAAMLERAGDDAARPEWLEPEFGVRD-------GLY 448 +VA++ R + A PE + G Sbjct: 460 RPHQDTIARATNEHDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFVGRSE 519 Query: 449 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 508 L++ QA AIL++RL+ L LE +L+ E L+++ A L +L S D I +EL+ Sbjct: 520 GLSDVQADAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGDELKD 579 Query: 509 VREQFGDK-----RRTEITA--NSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQR 561 +++FG RRT+ D+ LE +I +E V + S G+++ Sbjct: 580 AKKKFGKDYVAGARRTQFAEAAEVPDVPLEAMIEREPVTIVCSQMGWIRAMSGH------ 633 Query: 562 RGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVN 621 + K+ D A T D I+ F++ GR Y++ LP G P+ Sbjct: 634 --VDLTRDFKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGGR--GMGEPLRL 689 Query: 622 LLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDE 681 ++ L D I + K+ +A+ G + GK + + D Sbjct: 690 MVDLPNDVEIIDMFV---HAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNVSDD-- 744 Query: 682 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR 725 + + D V + S K++ F + + MG GVR + Sbjct: 745 VAKLVKPVAGDHVAVVSENRKLLVFPIAELPEMGR-GKGVRLQK 787 Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 17/204 (8%) Query: 675 KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG--VRGI-RLGEGDK 731 K DGD D++++F+A G+ S++ G G +R + L + Sbjct: 641 KFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLP--GGRGMGEPLRLMVDLPNDVE 698 Query: 732 VVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD 791 ++ + V D ++ A++ G G A+ +++ K V+++ + V V+ Sbjct: 699 IIDMFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNV-----SDDVAKLVKPVA 753 Query: 792 CDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED---ENVVGLQRVAEPVDEEDL 848 D + ++++ L+ ++E+ +GR +GV L + + + L + DL Sbjct: 754 GDHVAVVSENRKLLVFPIAELPEMGR-GKGVRLQKYGSARGRQGTLDLDGGLSDLTTFDL 812 Query: 849 DTIDGSAAEGDDEIAPEVDVDDEP 872 T AA GD +VD P Sbjct: 813 ATGLSWAATGDRT---RTEVDMSP 833 >UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=A9F3U1_SORC5 Length = 800 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 266/796 (33%), Positives = 416/796 (52%), Gaps = 74/796 (9%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM-NVLGNDWNKAYKKSAR 68 ++ +E + YL+YA+SVI RALPDVRDGLKPV RR+LYAM + L + Y+KSA Sbjct: 35 DTSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAA 94 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VVGDV+GKYHPHGD A+YD +VR+AQ F +R L+ G GNFGS+DGD+ AAMRYTE +L Sbjct: 95 VVGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLR 154 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 +A EL+++L + TVDF NYDGT P V+P++ PNLLVNGS GIAVGMAT+IPPHNL Sbjct: 155 PLALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLG 214 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIING-RRGIEEAYRTGRGKVYIRARAE 247 EVI+ C+A I++ +++ L+ ++ GPDFPT ++ ++ +E Y G+G + +R + Sbjct: 215 EVIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQ 274 Query: 248 VEV-DAKTG-RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 +E D K G I++ IPY + + ++EKIAE++ K++ + +RDES + +RIV+ Sbjct: 275 LEEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGE-VRIVM 333 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH------GQPKIMNLKDIIAAFVRHRR 359 E+KR A ++V+ LY QT L ++ +N+ L P+ + L +I+ F+ R Sbjct: 334 ELKRGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRY 393 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 VTRR FEL + R R ILE +D +I +IR + A+A L+ Sbjct: 394 ATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKR------ 447 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 + L E+Q AIL+L+L +L LE + + Sbjct: 448 ----------------------------FTLNEEQTDAILELKLYRLARLEILLVQKDLG 479 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQE 537 E + + +L S + ++R+EL ++ +G+KRRT++ + + ED I E Sbjct: 480 EKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGSYGEKRRTKVVGSIDEPEYQAEDFIVAE 539 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 D V LS QG+VK R K ++ RI+E D + + +T + FS+ G Sbjct: 540 DANVILSAQGWVKRV---------REVKDLASTRIREGDSVLAAVAGSTRSTVAFFSNLG 590 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE-------------FEEGV 644 Y +++ +P++ G P+ L L ER+ A++ E Sbjct: 591 ACYVCRIHDVPQS--TGYGDPVQKLFKLADGERLIALMSFDPRALDVPAQTPDSAEPEPP 648 Query: 645 KVFMATANGTVKKTVLTEF-NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 T G + L + +G+ KL +GDE++ V G D V+ S++ Sbjct: 649 FALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLFVHAVDGADRVLCASSDAWA 708 Query: 704 VRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTA-TQNGYGKRTAVAEYP 762 + + + G +R+ EG+++V + G ++T T+ G A ++ Sbjct: 709 LSVAVEELALLSGPGKGSVVMRVAEGERLVGAALALGPSDVITVETEKGKTLEIAASKI- 767 Query: 763 TKSRATKGVISIKVTE 778 R T+G + Sbjct: 768 AGQRGTQGEPVARRDR 783 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 89/535 (16%), Positives = 169/535 (31%), Gaps = 76/535 (14%) Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R+ +V + L K L L + ++ A+A+ + Q Sbjct: 299 RKAIVEKIAEVILSK------KLPTLVDVRDESTGEVRIVMELKRGADAQLVMAYLYKQT 352 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 + LT LD R +T +L E Sbjct: 353 PLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILT-----KFLDFRYATVTR----RLEFE 403 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 EL +I L D L EVIR R++E A++A+ ++ E Sbjct: 404 LGELRRRITILEGFEKIFDALDEVIR-----------IIRKSEGKADAAEKLMKRFTLNE 452 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 + + + L Q+ G+ ++ A+ E L S Sbjct: 453 EQTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEG---------------LLRSDAK 497 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 R ++ + R + +++ E V E + +A G VK+ Sbjct: 498 RWGIVRDELVEIKGSYGEKRRTKVVGSIDEPEYQAEDFIVAEDAN----VILSAQGWVKR 553 Query: 658 T-VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 + + R + +GD ++ S V FS G + V Sbjct: 554 VREVKDLASTR--------IREGDSVLAAVAGSTRSTVAFFSNLGACYVCRIHDVPQSTG 605 Query: 717 NTTGV-RGIRLGEGDKVVSLIVPRGD----------------GAILTATQNGYGKRTAVA 759 V + +L +G+++++L+ L T+ G G R ++ Sbjct: 606 YGDPVQKLFKLADGERLIALMSFDPRALDVPAQTPDSAEPEPPFALAITRGGLGFRFSLR 665 Query: 760 EYPT-KSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRN 818 + +R+ + V+ VD D+++ + + V E++++ Sbjct: 666 PHRDPSTRSGRR---FAKLNEGDEVLFVHAVDGADRVLCASSDAWALSVAVEELALLSGP 722 Query: 819 TQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE-GDDEIAPEVDVDDEP 872 +G +++R AE E +VG P D ++T G E +IA + EP Sbjct: 723 GKGSVVMRVAEGERLVGAALALGPSDVITVETEKGKTLEIAASKIAGQRGTQGEP 777 >UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n=22 Tax=Ureaplasma RepID=B5ZBW2_UREU1 Length = 855 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 252/811 (31%), Positives = 429/811 (52%), Gaps = 47/811 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MS ++I ++ + SY YA +I RALPD+RDGLKPV RR+LYAM+ LG + Sbjct: 1 MSVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHD 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSAR VG+VIGKYHPHGDS++Y+ +VRM+Q + L+D GN GSIDGD+AAAM Sbjct: 61 KPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+KIA ++ +L+K+ V F N+D +EK P ++P+ PNLL+NG++GIA G AT Sbjct: 121 RYTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +IPPHN EV + + ID D SIE L++ P PDFPT I+ G A++TG GK Sbjct: 181 SIPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKF 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 IRA E + ++ II++ IPY+ NKA +I++I +++ K V G+ +RDESD G Sbjct: 241 VIRASIEFKT-SEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKG 299 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+I+ K+D E V N LY +T L++S+ +A+ H P +++L + A + H + Sbjct: 300 VSIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLD 359 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ + +++L K R I+E L + ID II++IR + + +AK AL+ Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALI--------- 410 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + T QA+AI+ +RL LT + L +E++ Sbjct: 411 -------------------------QTFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWES 445 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQED 538 L Q L + S +++++ +++FG +R+T++ A++N + +I ++ Sbjct: 446 LQQQAKILKERIKSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQS 505 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + + +S GY+K +E+ + G +K D + V N+HD IL +S+ + Sbjct: 506 LNLVISRDGYIKIVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAK 560 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE--FEEGVKVFMATANGTVK 656 + ++ +++ G + N + +E++ A+ E + ++ + + +K Sbjct: 561 LINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIK 620 Query: 657 KTVLTEFN-RLRTAGKVAIKLVDGDELIGVDLTSGEDE--VMLFSAEGKVVRFKESSVRA 713 + L E + + +KL + D LI +L + V+ S G V+ F + Sbjct: 621 RIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINC 680 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 773 + G++ ++L D++ S+++ +G + + K +++E RA Sbjct: 681 LNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPL 740 Query: 774 IKVTERNGLVVGAVQVDDCDQIMMITDAGTL 804 T++ V+ A V + + ++ + + Sbjct: 741 YLPTKKAQSVLAAFLVGNENVFYLLDEQQKI 771 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 94/223 (42%), Gaps = 14/223 (6%) Query: 628 DERITAILPVTEFEEGVKV-FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVD 686 DE I A + + E + + + +G +K F + + L D L + Sbjct: 488 DEFIKAEVNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKYDE---LGLKTNDLLFYHN 544 Query: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPR---- 739 + + D +++ +++ K++ + M G + +KVV++ V Sbjct: 545 VINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFK 604 Query: 740 -GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ-IMM 797 + ++ ++ KR + E ++ +K + +K+ E +GL+ + D +Q ++ Sbjct: 605 VDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNENDGLISANLIKKDHNQFVVA 663 Query: 798 ITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 I+ G ++ V EI+ + R +G+ +++ ++ + + V Sbjct: 664 ISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706 >UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PLT5_MYCA5 Length = 949 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 247/823 (30%), Positives = 419/823 (50%), Gaps = 44/823 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +L I N+ + + + Y+ +I RA+PD RDGLKPV RR+LY+M L N Sbjct: 9 MYNLTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNN 68 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +A++KSA++VG+V+G+YHPHGDS++Y+ +VRM+Q + + L++ GN GSID D AAAM Sbjct: 69 QAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAM 128 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL KI+ ++ DL+++ V N+D TE P V+P+ IPNLL+NGS GIA G AT Sbjct: 129 RYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFAT 188 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL+EVI+ + I + IS+E L + + GPDFPT +I+G GI +A+ TG+GK+ Sbjct: 189 EIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQAFETGQGKI 248 Query: 241 YIRARAEVEVDAKTGRET--IIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 I +R + I ++E P+ V K++L+ I LV +K + G+ +RD+S++ Sbjct: 249 NISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNR 308 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+ I +E++ +A E ++N L S+T L++S+ NMVA+H PK+MNL+ ++ ++ H Sbjct: 309 EGISIYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQMLLFTYLSHL 368 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 +++ T+ F+L+K R I++ D +I +I+++ Sbjct: 369 KDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSK-------------- 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + + + T QA AI +LRL KL+ ++ + +E Sbjct: 415 -------------------KGVIEALEKTFGFTNIQATAIAELRLYKLSKMDQLEFQNEA 455 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQ 536 KEL +IA +L + + + I E+L+ +++++ R +EI+ + +IN + L Sbjct: 456 KELAIKIARCKELLENPNEFDKFIIEQLKDIKKEYAKPRFSEISQDKIRTEINTKLLAKN 515 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ED LS +GY+K + + G S ++K+ D I N+ ++ F++ Sbjct: 516 EDFYFFLSKEGYIKRISKKAFSSN-----GFSGFKLKDNDAIFYYDKINSLSKLIFFTNL 570 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G + + + L E G I +L+ LE +ERI ++ + F + + T G K Sbjct: 571 GNYFIIDAHTLKENGWKDIGNHISSLVALENNERIIRVMEIESFNTYSRFIILTKKGMAK 630 Query: 657 KTVLTEFNRLRTAGKV-AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 K + EF+ + A K I L DEL V + + E + + G E+ V Sbjct: 631 KVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNKEKLLFILLTGGLYYLIDENVVPEYS 690 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-VISI 774 +G+ I+ ++ + ++ T G KRT + R++ G V Sbjct: 691 LKASGISLIKTDRDQEIEAFSPISPKNKVIIMTDKGQFKRTKMETVKLVGRSSHGKVFYY 750 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGR 817 + + V+ Q + + I + + Sbjct: 751 PMKTVSSKVISLEVATTQLQCYFTNKENEPTKFDLKNIPLSKQ 793 >UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae RepID=B8DTB4_BIFA0 Length = 982 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 302/901 (33%), Positives = 431/901 (47%), Gaps = 134/901 (14%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + I + EE+ S+L+YA SVI RALPD RDG+KPV RR++Y M + + Y Sbjct: 16 VEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPY 75 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSARVVG+V+GK HPHGDSA+Y+ +VR+AQPF++R LVDG GNFGS+D D AA RYT Sbjct: 76 MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 134 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RLA A + AD++++TVDFV NYD K P V+P+ IPNLLVNG+SGIAVGMATN+ Sbjct: 135 EARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMA 194 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 HNL EV+ + D +++ LM+++PGPD+P II GR+GI +AY TGRG V R Sbjct: 195 THNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTR 254 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMR 302 + VE ++ I+V ++PY V R++E+I+E VK +++GIS D +D+ +G R Sbjct: 255 SATHVENLTAR-KKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTR 313 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IVIE+K VL L+ T LQ +F IN VAL +G+P + L+ ++ ++ HRR V+ Sbjct: 314 IVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVI 373 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RR+ F +KA DR H++E L +AL +ID +I +IR + AK L++ Sbjct: 374 RRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR--------- 424 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + L + QAQ ILDLRL++LT + +L E EL Sbjct: 425 -------------------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQ 459 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--------------- 527 I EL RILGSA L V+ +E++ +G RRT + D Sbjct: 460 SSITELERILGSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPS 519 Query: 528 ----------------------------INLEDLITQEDVVVTLSHQGYVKYQPLSEYEA 559 I E V+ LS G + + Sbjct: 520 DAALDAARHAENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDALTI 579 Query: 560 QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR---- 615 +G + + +D I L+ A T +S GR+ V +LP Sbjct: 580 W--AKRGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLT 637 Query: 616 -GRPIVNLL------PLEQDERITAILPVTE-------FEEGVKVFMATANGTVKKTVLT 661 G LL ER+ A L + + + V + T NG VK+ Sbjct: 638 GGIEATELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRE 697 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 + I L DGDEL+ +D + S++ ++ ++ +VR G G+ Sbjct: 698 --SPTTMDSWSIIDLKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRPQGRTAAGM 755 Query: 722 RGIRLGEGDKVVSLIV------------------------------PRGDGAILTATQNG 751 GI L +G V+S V GD L T+NG Sbjct: 756 AGIHLADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSPASGAVVLTVAGDVDALPGTENG 815 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 811 K T + YPTK RAT GV S + + ++ A ++ T G V Sbjct: 816 AAKVTPLELYPTKGRATGGVRSQRFLKGQNTLIRA--CVGSYPLLAATSGGHPVELPAPA 873 Query: 812 I 812 I Sbjct: 874 I 874 >UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria RepID=PARC_SYNY3 Length = 920 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 279/915 (30%), Positives = 453/915 (49%), Gaps = 118/915 (12%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I P ++ EE++ SYL+YAMSVIVGRALPDVRDGLKPVHRR+LYAM LG ++ ++K Sbjct: 10 QIIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKC 69 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDV+GKYHPHGD +VYD +VRM Q FS RY L+ G GNFGS+D D AAMRYTE R Sbjct: 70 ARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 129 Query: 127 LAKIAH-ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 LA IA ++ + + VDF N+D +++ P V+P ++P LL+NG SGIAVGMAT+IPPH Sbjct: 130 LAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPH 189 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL EV++G + I+ D+S + L + IPGPDFPT I GI +AY+TGRG + +R Sbjct: 190 NLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQAYQTGRGLIPVRGV 249 Query: 246 AEVEVDAK-----TGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + +E R I++ E+P+QVNKA IEKIA LV + +++GIS LRDESD+ G Sbjct: 250 SHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTG 309 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MR+VIE+KRDA +L LY T LQ +FG+ +AL + QP M+L+ I+ F++ R + Sbjct: 310 MRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMSLRQILQEFLQFRED 369 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + R+ EL + R R +L L + L N+D +IE++R A AK L Sbjct: 370 TLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQER------- 422 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ++ QQ AIL + ++++TGLE EKL E+ + Sbjct: 423 ---------------------------LGISLQQGDAILGMPMRRITGLEREKLQQEHTD 455 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI------------------- 521 L +I +L ++G ++ +++EL ++++F D+RRT+I Sbjct: 456 LAQRIEQLETLIGDRQERLKALKKELRGLKKKFADERRTKILQGMPAKIEPLPVNQDPLP 515 Query: 522 ----------TANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR 571 +A +++ QE +V+ S P ++ + K + Sbjct: 516 EATIPPVESQSAPEEELDSPGEPEQEQLVLENSSPPTADSAPEAKQDDLNLAVK-PTPKT 574 Query: 572 IKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE----- 626 +K+E ++A TH ++ + + P + P L + Sbjct: 575 VKQEAQPSPEVIA-THSKLVSVAEKN----------PLTLFTPQTPPAEAFLSINLQGEI 623 Query: 627 --QDERITAILPVTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD 678 E +T+ ++ + + +G + + L ++++ Sbjct: 624 AWHPEELTSANSFEPLDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILP 683 Query: 679 GDELIGVD---------LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 +++L S +G+V ++ +G G+ ++L G Sbjct: 684 KSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGRVKLLAGQELQELGP--RGLSLMKLKNG 741 Query: 730 DKVVSLIVP---------RGDGAILTATQNGYGKRTAVAE--YPTKSRATKGVISIKVTE 778 D + + ++ AT NG R A+ S + +G ++++ Sbjct: 742 DLLQFAQLVTPVNPASAQNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRL-R 800 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR-TAEDENVVGLQ 837 +VG + D+++++T AG + ++ + + G +++ T++ + ++ + Sbjct: 801 ATESLVGVLMASPGDRVLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFTSKADRLLTMV 860 Query: 838 RVAEPVDEEDLDTID 852 + T D Sbjct: 861 AANQGAQSPQSSTYD 875 >UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z0V3_EUBE2 Length = 769 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 277/797 (34%), Positives = 426/797 (53%), Gaps = 57/797 (7%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +A +I E ++ SY+DY+MSVI RALPDVRDGLKPV RRVLYAM+ LG +++K + Sbjct: 1 MAEKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPH 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +KSAR+VGD +GKYHPHGDS++Y+T+V ++Q F LVDG GNFGSI+GD AAAMRYT Sbjct: 61 RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120 Query: 124 EIRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 E +L K ++ +ADL+K VDFV N+D TEK P+V+P ++PNLLVNG+ GIAVGM TNI Sbjct: 121 EAKLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNI 180 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 PPHNL+EV++ AY+D+EDI+ + LM+ PGPDFPT I+ + + Y TG GK+ + Sbjct: 181 PPHNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGGIVINKSELGAIYETGTGKIKL 240 Query: 243 RARAEVEVDAKTG-RETIIVHEIPY---QVNKARLIEKIAELVKEKRVEGISALRDESDK 298 R + E ++ +++ EIPY N + I + L++ K+ I + +ES K Sbjct: 241 RGKVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESSK 300 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+RIV+E+K++A + + N LY +T+L+ +FG+NM+A+ G+P+ + +KDII + + Sbjct: 301 EGIRIVLELKKNADVKNLENLLYKKTKLEDTFGVNMLAIVDGRPETLGIKDIIKHHINFQ 360 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 E+ TR+ L K + I E L A ID IIE++R + AK LV + Sbjct: 361 YELATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNGNVEGI 420 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + + TE+QA AIL++RL KL GLE L EY Sbjct: 421 KFK----------------SEQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEY 464 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQED 538 E + +I + +ILGS + +VI+ +L +++++G +RRT I A + E I + + Sbjct: 465 DECVKKIEKYEKILGSRKEMAKVIKADLLNIKKEYGVERRTVIEDGEAAVFEEKKIPEME 524 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V+ + GY + ++ +E + ++ D I F+ G Sbjct: 525 VMFIMDRFGYARTIDMAAFERNKDAVFN----------ENKYVIPVMNTDKICIFTDTGD 574 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 ++ +K+ LP +G PI NL + + I + E + K+ T G +K Sbjct: 575 LHQLKIKDLPFTKFRDKGTPIDNLCNYDSSKEIIVYITPFERLKNQKMLFVTRQGMMKLV 634 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGV----------------------DLTSGEDEVML 696 EF + KL D D+LIG+ ++ V++ Sbjct: 635 DSEEFQVAKRT-VACTKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIV 693 Query: 697 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT 756 + G ++F + + + GVRGI+L + D + + + T GK Sbjct: 694 QTENGVFLKFPLTDIPMKKKSAVGVRGIKLSKDDYIEDVFLLTEGDEF---TMEYKGKSI 750 Query: 757 AVAEYPTKSRATKGVIS 773 + A+ T R TKG Sbjct: 751 SFAKMKTAHRDTKGTKI 767 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 34/244 (13%) Query: 625 LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIG 684 +E E A+ + E +F+ G + + F R + A E Sbjct: 507 IEDGE--AAVFEEKKIPEMEVMFIMDRFGYARTIDMAAFERNKDAVFN--------ENKY 556 Query: 685 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL----GEGDKVVSLIVPR- 739 V D++ +F+ G + + K + G L + +V + Sbjct: 557 VIPVMNTDKICIFTDTGDLHQLKIKDLPFTKFRDKGTPIDNLCNYDSSKEIIVYITPFER 616 Query: 740 -GDGAILTATQNGYGKRTAVAEYPTKSRA------------------TKGVISIKVTERN 780 + +L T+ G K E+ R V + Sbjct: 617 LKNQKMLFVTRQGMMKLVDSEEFQVAKRTVACTKLADDDKLIGMYSTDARVEIYSKFSLD 676 Query: 781 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 840 G + V+ +++ T+ G ++ +++I + ++ GV I+ ++D+ + + + Sbjct: 677 GEIKEEEVVESNQNVIVQTENGVFLKFPLTDIPMKKKSAVGVRGIKLSKDDYIEDVFLLT 736 Query: 841 EPVD 844 E + Sbjct: 737 EGDE 740 >UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Planctomycetaceae RepID=A6CC19_9PLAN Length = 802 Score = 690 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 260/818 (31%), Positives = 422/818 (51%), Gaps = 64/818 (7%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM-NVLGNDWNK 61 + I V I + + YL+YAMSVI RALPDVRDGLKPV RR+LY M + L N Sbjct: 19 TESDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANA 78 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +K A++ GD G YHPHGD++VYD +VR+AQ F+LR L++GQGNFGSI G AAA R Sbjct: 79 KPRKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAAAAR 138 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL IA LM +L +TV+ NYDGT P V+P + PNLLVNG GIAVGMATN Sbjct: 139 YTEARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATN 198 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKV 240 IPPHNL EVI C+ I +D ++ LM+HI GPDFP I+ +R + Y+ GRG V Sbjct: 199 IPPHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPV 258 Query: 241 YIRARAEVEVDAKT-GRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-DK 298 +R + E +T G + ++V+ +PY V L+ +I +V+ +++ + + DE+ DK Sbjct: 259 KVRGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDK 318 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-----PKIMNLKDIIAA 353 +G++IV+E+K DA E V+ LY T L+ +F +NM L + P+ +LK+++ Sbjct: 319 NGLKIVLEIKPDADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQY 378 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVAN 413 F+ R V +R ++L+ R HIL+ A+ ++D ++LIR + +A L+AN Sbjct: 379 FLDFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN 438 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 + L E Q AIL+L+L +++ LE Sbjct: 439 ----------------------------------FPLDEIQTMAILELQLYRISKLEINT 464 Query: 474 LLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLE 531 + +E E + ++ +IL S RL +V+ EL+ + ++F +KR+T++ + + + + Sbjct: 465 IREELAEKEAEAEKIRKILASDKRLWKVVENELKELADEFPEKRQTKLGSSEEITEFDPQ 524 Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 591 I +E+ V +S +G++K + G + + R +E D + + +T DH++ Sbjct: 525 AYIVRENTNVVVSREGWIKRVGR---LKTKEGTQELAKTRTREGDSVLAVAPGSTLDHVV 581 Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEF----------- 640 FSS G Y++ + Q+P ++ G P+ + + A + Sbjct: 582 FFSSDGVAYTLPIEQVPVSS--GYGEPLSKHARMSDGAVLVAAVTTDSRFTPEDKATKKQ 639 Query: 641 -EEGVKVFMATANGTVKKTVLTEFNR-LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFS 698 V + T G + + F AG+ +L D ++ L + + + + Sbjct: 640 PLPTPHVLIVTEKGQFMRISFSLFRTASTKAGRKYCRLGKDDRVVYAGLVEEAETMFIAT 699 Query: 699 AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTA 757 + +V+ + + GV+GIRL +GD+V+ ++ + R + G Sbjct: 700 QDARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIGVLQLTRPSDCLRVINTAGKKMTFG 759 Query: 758 VAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQI 795 +Y SR KGV + + + ++ ++V D D++ Sbjct: 760 QMKYGVTSRGGKGVKTSQRSGFAEILYPPIEVVDWDEL 797 Score = 93.1 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 19/237 (8%) Query: 624 PLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELI 683 L E IT P + + G +K+ + + T + +GD ++ Sbjct: 511 KLGSSEEITEFDPQAYIVRENTNVVVSREGWIKRVGRLK-TKEGTQELAKTRTREGDSVL 569 Query: 684 GVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV-RGIRLGEGDKVVSLIVPR--- 739 V S D V+ FS++G V + + R+ +G +V+ + Sbjct: 570 AVAPGSTLDHVVFFSSDGVAYTLPIEQVPVSSGYGEPLSKHARMSDGAVLVAAVTTDSRF 629 Query: 740 ------------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787 +L T+ G R + + + T S TK ++ VV A Sbjct: 630 TPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTAS--TKAGRKYCRLGKDDRVVYAG 687 Query: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 V++ + + + T ++ + E +++ +GV IR + + V+G+ ++ P D Sbjct: 688 LVEEAETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIGVLQLTRPSD 744 >UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsia RepID=PARC_RICBR Length = 736 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 284/785 (36%), Positives = 410/785 (52%), Gaps = 68/785 (8%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 +I ++ L YL YA+S I+ R+LPDVRDGLKPVHRR+LYAM L + N YKK Sbjct: 5 KIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKC 64 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 ARVVGDVIGKYHPHGD AVYDT+VR+AQ FSLRY L+DGQGNFGSIDGD+AAAMRYTE R Sbjct: 65 ARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTESR 124 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + +I LM D++K+TVDF YD ++ P +MP PNLL NGS GIAVGMATNIPPHN Sbjct: 125 MTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPHN 184 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYRTGRGKVYIRAR 245 L E+ + + ID I +M I GPDFPT II + I AY TGRG +RAR Sbjct: 185 LHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVRAR 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E E G I+V EIPYQV K++LIE+IA L+K+K++ +S +RDES D +R+VI Sbjct: 245 WEKEE-LNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRLVI 302 Query: 306 EVK-RDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVT 363 E + R ++V+ +L+ T L+ +NM + + PK+MN+ +++ F+ HR+ ++T Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNIIT 362 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ + L K + R ILE L +A N+D II++IR P Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI----------------- 405 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + LTE Q +AIL+ RL+ L LE ++++ E+ L Sbjct: 406 --------------------MMQRFQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQK 445 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFG-----DKRRTEITA---NSADINLEDLIT 535 Q A L IL + L +V+++E++ V+ +FG RRT + +++ IT Sbjct: 446 QQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFIT 505 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 +E + + S G+V+ S+ + KE D +L A T D IL SS Sbjct: 506 KEPITIICSKMGWVRSLKGHN--------NDLSSIKYKEGDAEKFILEAYTTDKILIISS 557 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 GR +++ + + G I L+ + ++ IT IL ++ + +A++ G Sbjct: 558 EGRFFTLLADNI--SKGKGTGESIKLLVDIGNND-ITEILV---YKPDHLLLLASSIGKG 611 Query: 656 KKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 715 E +GK + + DG I +G D V K++ F + M Sbjct: 612 FVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNG-DSVACIGESRKLLVFNIDEIPEM- 669 Query: 716 CNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 GV + K++ + + + L+ G K R + G + Sbjct: 670 KKGQGVTLQKFK-NAKLLDIKIFNREDG-LSWNSGGKVKLEKNIIAFLGKRGSTGKLPPM 727 Query: 776 VTERN 780 +N Sbjct: 728 GFPKN 732 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 77/197 (39%), Gaps = 12/197 (6%) Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 + + G V+ +IK +GD + D++++ S+EG+ Sbjct: 511 IICSKMGWVRSLKG------HNNDLSSIKYKEGDAEKFILEAYTTDKILIISSEGRFFTL 564 Query: 707 KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 766 ++ ++ + + + ++V + D +L A+ G G E +++ Sbjct: 565 LADNISKGKGTGESIKLLVDIGNNDITEILVYKPDHLLLLASSIGKGFVVNSNEVMAQTK 624 Query: 767 ATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 + K ++++ + + V + D + I ++ L+ + EI + + QGV L + Sbjct: 625 SGKQIMNV---PDGHTCIACLPV-NGDSVACIGESRKLLVFNIDEIPEM-KKGQGVTLQK 679 Query: 827 TAEDENVVGLQRVAEPV 843 ++ ++ ++ Sbjct: 680 F-KNAKLLDIKIFNRED 695 >UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV72_BACTU Length = 740 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 302/772 (39%), Positives = 449/772 (58%), Gaps = 36/772 (4%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + +I ++ +E+KSS++DYA++V+ RALPDVRDGLKPVHRR+LYAM LG +KAY Sbjct: 1 MGGKIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAY 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VG+VIGKYHPHGDSAVY+++V+ AQ F L+DG GNFGS+DGDSAAAMRYT Sbjct: 61 KKSARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL+ +A E++ DL K VDF DN+D +E+ P V+P K+PNLLVNG GIAVGMA P Sbjct: 121 EARLSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PH + V++ +AY D +DI IE L++ I PD+P+ II + + + YRTG GK IR Sbjct: 181 PHGVNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGIITNKNELRDLYRTGIGKAVIR 240 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 A+ ++E DA GR+ ++V EIPY +K L K+ +V EK++E I + DESDKDG+ Sbjct: 241 AKIDIE-DAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGI 299 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RIV+EVK+ + +LN LYS+T LQ S + L +G P +NLKD + ++E+ Sbjct: 300 RIVLEVKKGVDIDNLLNKLYSKTPLQSSESYQYLVLVNGVPTTINLKDYCKHYFDFQKEI 359 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 +R + L KA+ R ILE L A +D IIE++R A EAK L+ + + Sbjct: 360 TRKRYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTESISFK 419 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + + TE+QAQAILD+RLQKL GLE E+L EYKE+ Sbjct: 420 T----------------KKHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEV 463 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 L ++ E +LGS +++VI++ L ++ FG +RRTEI I + I +EDV V Sbjct: 464 LAEMEEYELVLGSEKEMLKVIKKYLRGFKKDFGRERRTEIQ-EKKTIEYVEEIKEEDVWV 522 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 + GY K E + ++ + F+++GR+Y Sbjct: 523 LIDKFGYTKSVDTISVERSSEETLS----------EYKQEILTKNTSKLSVFTNQGRLYQ 572 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 +K+ +P+ +G PI L ++++E I TE E V M T G +K+T+ + Sbjct: 573 IKLADIPKVKIKDKGVPIQRLGKMKKNEYPLYITTNTELETER-VIMLTKTGLIKQTLCS 631 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSG-EDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 E R+ VA KL + DE+I + + +++V++FS +G ++RF + + + N G Sbjct: 632 ELISSRSV-VVATKLEEDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKG 690 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 V+ + L E D + + + + + + GK+ +++ K+R KG+ Sbjct: 691 VKAVSLMEEDVIEGVYILNENNKDV---KQLNGKQIELSKVERKTRGKKGIN 739 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 86/219 (39%), Gaps = 18/219 (8%) Query: 633 AILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 692 I V E +E + G K R K LT Sbjct: 508 TIEYVEEIKEEDVWVLIDKFGYTKSVDTISVERSSEETLSEYKQE--------ILTKNTS 559 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL---GEGDKVVSLIVPRG--DGAILTA 747 ++ +F+ +G++ + K + + + GV RL + + + + ++ Sbjct: 560 KLSVFTNQGRLYQIKLADIPKVKIKDKGVPIQRLGKMKKNEYPLYITTNTELETERVIML 619 Query: 748 TQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDD-CDQIMMITDAGTLVR 806 T+ G K+T +E SR+ V+ E + V+ +++ + +++ + G ++R Sbjct: 620 TKTGLIKQTLCSEL-ISSRS---VVVATKLEEDDEVIQITPINEVDEDVLVFSKKGYILR 675 Query: 807 TRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDE 845 ++EI ++ +N +GV + E++ + G+ + E + Sbjct: 676 FSINEIPVLRKNAKGVKAVSLMEEDVIEGVYILNENNKD 714 >UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=uncultured bacterium RepID=C5JAG1_9BACT Length = 765 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 282/787 (35%), Positives = 427/787 (54%), Gaps = 65/787 (8%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +I P I EL+S YL YA+S I+ R+LPDVRDGLKPVHRR+L+AM L D +KK Sbjct: 7 EKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFKK 66 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVGDVIGK+HPHGD A YD +VR+AQ F+ RY LVDGQGNFG++DGD AAAMRYTE Sbjct: 67 SARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAMRYTEA 126 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL +A L+ DL+++TVD + YDG+++ P V+P + PNLL NG++GIAVGM+T IPPH Sbjct: 127 RLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIPPH 186 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIRA 244 N EV+ L I D + LM+H+PGPDFPT ++ + E Y TGRG + +RA Sbjct: 187 NAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRLRA 246 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 R E E+ G ++V EIPY V K RLIE+IA+L+ +++ +S +RDESD +RIV Sbjct: 247 RWEQEMVG-HGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAK-VRIV 304 Query: 305 IEVK-RDAVGEVVLNNLYSQTQLQVSFGIN-MVALHHGQPKIMNLKDIIAAFVRHRREVV 362 +E + R E ++ L+ + L+V +N V +P++M+LK ++ A++ HR +V Sbjct: 305 LEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQVH 364 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 TRR +L + R+R H+L+A NID +I +I+ PA A Sbjct: 365 TRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPA---------------- 408 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + + +QA+A+L+LRL+ L LE + E E Sbjct: 409 ---------------------LMQRFGMDSEQAEAVLNLRLRALRRLEEMSIRKEMGEKE 447 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DLITQEDVV 540 + AEL +L + +++E++ R++F D RRT + + +I+L DLI +E + Sbjct: 448 ARAAELSAMLADPTLMWAAVQDEVKRTRKEFSDGRRTRMAGPAPEIDLRPEDLIQKEPLT 507 Query: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 600 LS +G++K + + ++ R KEED ++R + +H + ++ G+VY Sbjct: 508 AVLSRKGWIKALKGHDIDLEK--------IRFKEEDGLERAVKGYSHQTVTFLAASGKVY 559 Query: 601 SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 660 S+ +LP R G P+ L L+ +RI +L V + + F+ T G + Sbjct: 560 SLLGDRLPSGKR--FGEPLTVLFELDPGDRILWMLAV---DPEGEYFVTTRLGQGFRIRG 614 Query: 661 TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 720 + + GK + L +GD+ + V G V S +++ + +G G Sbjct: 615 RDLVANQRTGKQVVSLREGDQPLHVHPVRGA-AVAAISHGRRLLICRLEEFPLLGR-GKG 672 Query: 721 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN 780 VR LG G+ +V + ++ + GKRT K + T+G + + Sbjct: 673 VRIQNLGRGEGLVDAMTFDPQAGLVLDS----GKRTRQLTELDKWQGTRGSRGAML--PH 726 Query: 781 GLVVGAV 787 G + GAV Sbjct: 727 GFLGGAV 733 Score = 68.1 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 12/196 (6%) Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 + + G +K + + + I+ + D L V +A GKV Sbjct: 509 VLSRKGWIKALKGHDIDLEK------IRFKEEDGLERAVKGYSHQTVTFLAASGKVYSLL 562 Query: 708 ESSVRAMGCNTTGVR-GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 766 + + + L GD+++ ++ +G T+ G G R + R Sbjct: 563 GDRLPSGKRFGEPLTVLFELDPGDRILWMLAVDPEGEYFVTTRLGQGFRIRGRDLVANQR 622 Query: 767 ATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 K V+S++ ++ V + I+ L+ R+ E ++GR +GV + Sbjct: 623 TGKQVVSLREGDQPLHVHPVRGAA----VAAISHGRRLLICRLEEFPLLGR-GKGVRIQN 677 Query: 827 TAEDENVVGLQRVAEP 842 E +V Sbjct: 678 LGRGEGLVDAMTFDPQ 693 >UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaproteobacteria RepID=PARC_CAUCR Length = 759 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 273/796 (34%), Positives = 414/796 (52%), Gaps = 75/796 (9%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 I + E L YL YA+S I RALPDVRDGLKPVHRRVLYAM+ + + + A +K Sbjct: 17 RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126 A+VVG+V+G +HPHGD+++YD +VR+AQ FS R LV+GQGNFG+IDGDSAAAMRYTE + Sbjct: 77 AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 + + A L+ ++++ VDF YDG ++ P V+P+ PNLL NGSSGIAVGMAT+IPPHN Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGKVYIRAR 245 E+I+ C + + D + L+E +PGPDFPT +I R + E Y TGRG V +RA+ Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E E D G I+V EIPYQV K+ L+E++A+L+ K+ + +RDES +D +R+V+ Sbjct: 257 WEKE-DTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAED-IRLVL 314 Query: 306 EVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVT 363 E K ++ EV++ +L+ + L+ F +N+ L G P +M +K + AF+ HRREV+T Sbjct: 315 EPKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLT 374 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR L K R HIL+ L +A N+D +I ++R+ P E Sbjct: 375 RRARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKE------------------ 416 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 + LT+ QA AIL+ RL++L LE ++ E+ EL++ Sbjct: 417 -------------------KLIETFGLTDIQADAILNTRLRQLAKLEEMEIRREHAELVE 457 Query: 484 QIAELLRILGSADRLMEV-------IREELELVREQFGDKRRTEITAN---------SAD 527 + +L +L S + ++ +R L ++ R T +T AD Sbjct: 458 ERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGRSVFGEAPQVDAD 517 Query: 528 INLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587 +E +I +E + + LS +G+++ S + KE D + L+ A T Sbjct: 518 AAIEAMIVREPITIILSERGWIRAAKGK--------IDDPSELKFKEGDKLGFLVPAETT 569 Query: 588 DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF 647 D +L FSS GR +++ +LP A G P+ ++ L+ +I + P F+ G K Sbjct: 570 DKLLIFSSDGRFFTLGCDKLPSAR--GHGEPVRMMIELDDKVKIIDVFP---FKAGRKRI 624 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 707 +A+ G E R AGK + + G+E L + D++ + GK++ F Sbjct: 625 LASKGGYGFLMPEEEALANRKAGKQVLNV--GNEGAAFCLEAVGDQLAVIGDNGKILIFP 682 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 + M GV+ EG + + + G + A + RA Sbjct: 683 LEELPEMPR-GKGVKLQAYREG-GLRDGLSFNAETGAYWIDTAGRRRDWAEWKEWVGRRA 740 Query: 768 TKGVISIKVTERNGLV 783 G + K N Sbjct: 741 GAGKLVPKGFATNKRF 756 >UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G39_TROWT Length = 824 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 270/830 (32%), Positives = 421/830 (50%), Gaps = 59/830 (7%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 +IT V++ +++ S+L+YA SVI RALPD RDGLKPV RR+LY M+ +G +KA+ Sbjct: 18 NEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHV 77 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARV G+V+GK HPHGD+A+YDT+VRM+Q F++R L+DG GNFGS+ D AA RYTE Sbjct: 78 KCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSL-NDGPAASRYTE 136 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RL++ A ++ DLE VDFV NYD P+V+P +PNL+VNGSSGIAVGMAT+IPP Sbjct: 137 ARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPP 196 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E + + + + S+E +M+ +PGPDFPT +II G+ +E Y TG+G IRA Sbjct: 197 HNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKGSFKIRA 256 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-DGMRI 303 + + A G +++ E+PY V R+IEKI + V R++GI + D SD+ +G+++ Sbjct: 257 KISI-DYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKL 315 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 VI +K + V++NLY T L+ SF +N VAL G+PK + + D++ F+ HR V+T Sbjct: 316 VIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDMLKVFIDHRVCVIT 375 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR+ F L + R H+++ L +AL +ID I +IR++ EA+ L+ Sbjct: 376 RRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMK----------- 424 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 +T QA+ ILD+RL LT L KL E +EL Sbjct: 425 -----------------------CLNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRK 461 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTL 543 +L IL +++ ++ +EL+ V ++ RRT + ++ + ++ V L Sbjct: 462 TTQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRTILESSVKSKKQKTDYPRQ---VVL 518 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI----DRLLVANTHDHILCFSSRGRV 599 + G++ ++ +V I +S G+V Sbjct: 519 TTNGFIFTIEVNNDLISELSQPETFDMAFNTHSEPLRVVKSSIVCGVRSRIGALTSAGKV 578 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 LP G + L LE DE + E + + +AT++G VK+ Sbjct: 579 IPFTPIGLPVLDSGF--VTAKSFLGLENDEEAVLLF---ELHQKESLAIATSSGIVKRVT 633 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDL-TSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 RT I L GD ++G S + +A+G ++ + V Sbjct: 634 -PAIWPDRTE--RVITLSAGDRVVGAARGVSSCGYFVFITAKGNLLHYSAGLVNPQNRPA 690 Query: 719 TGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GV G+ L + D+V+S T + + ++ Y T+ RAT+GV K Sbjct: 691 RGVAGVTLKDDDDRVISFGYTEDVDRANVLTVSKRMTTSRLSSYQTRGRATRGVQCHKFL 750 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 + + A+ + + I + G +V + + S+ ++ GV R Sbjct: 751 KGEEWLHAAIV---GENLAAIDNLGNVV--AIGKSSVTAKSCAGVKQYRL 795 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 87/236 (36%), Gaps = 16/236 (6%) Query: 632 TAILPVTEFEEGVKVFMATANGTVKKTV-----LTEFNRLRTAGKVAIKLVDGDELIGVD 686 +++ + + + + T NG + ++E ++ T + ++ Sbjct: 501 SSVKSKKQKTDYPRQVVLTTNGFIFTIEVNNDLISELSQPETFDMAFNTHSEPLRVVKSS 560 Query: 687 LTSG-EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG---IRLGEGDKVVSLIVPRGDG 742 + G + ++ GKV+ F + + ++ V + L ++ V L Sbjct: 561 IVCGVRSRIGALTSAGKVIPFTPIGLPVL--DSGFVTAKSFLGLENDEEAVLLFELHQKE 618 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802 ++ AT +G KR A +P + I ++ + +V A V C + IT G Sbjct: 619 SLAIATSSGIVKRVTPAIWPD-----RTERVITLSAGDRVVGAARGVSSCGYFVFITAKG 673 Query: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEG 858 L+ ++ R +GV + +D++ V E VD ++ T+ Sbjct: 674 NLLHYSAGLVNPQNRPARGVAGVTLKDDDDRVISFGYTEDVDRANVLTVSKRMTTS 729 >UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaproteobacteria RepID=PARC_RHIME Length = 758 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 269/803 (33%), Positives = 414/803 (51%), Gaps = 78/803 (9%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 I PV+++ L+ YL YA+S I+ RALPDVRDGLKPVHRR+++AM+ +G N ++K Sbjct: 12 DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K AR+VGDVIGK+HPHGD +VYD +VR+AQ FS RY +VDGQGNFG+IDGD+AAA RYTE Sbjct: 72 KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 ++ ++A L+ ++++ VDF Y+ ++ P V+P PNLL NG+SGIAVGMAT+IPP Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191 Query: 185 HNLTEVINGCLAYIDDEDISIEGLM--------EHIPGPDFPTAAIIN-GRRGIEEAYRT 235 HN E+ + L I D ++E L+ I GPDFPT +I R + E+YRT Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRT 251 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 GRG +RAR VE D G I+V EIPYQV K+RLIEKIAEL+ +++ + +RDE Sbjct: 252 GRGGFRVRARWAVE-DLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDE 310 Query: 296 SDKDGMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAA 353 S +D +R+V+ K R +++ +L+ T+L+ +NM L G+ P++M L ++++ Sbjct: 311 SAED-VRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSE 369 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVAN 413 ++ HRREV+ RR+ L R IL +A NID +I +IR P Sbjct: 370 WLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAV------- 422 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 + LT+ QA+AIL++RL+ L LE + Sbjct: 423 ------------------------------MIERFGLTDVQAEAILNMRLRSLRKLEEFE 452 Query: 474 LLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSAD 527 + E+ L + AE+ +L S D+ + + E+ V+++F G +R T A AD Sbjct: 453 IRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPDAD 512 Query: 528 INL--EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585 + + +I +E + V +S +G++ A + S+ + K+ D + A Sbjct: 513 VEAIQQAMIEKEPITVVISEKGWI--------RALKGHIADTSSLQFKDGDGLKVSFPAQ 564 Query: 586 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK 645 T D IL F++ G+ Y++ +LP G P+ ++ +E D+ + + K Sbjct: 565 TTDKILIFTTGGKAYTLGGDKLPGGR--GHGEPLRIMVDMENDQDVLTAFV---HDPARK 619 Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR 705 + +++ G ++ GK + + DE V G D + + K++ Sbjct: 620 LIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKG-DHLAVVGENRKMLV 678 Query: 706 FKESSVRAMGCNTTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEY-P 762 F V M GVR R +G + S + G + +T Sbjct: 679 FPLVQVPEMAR-GKGVRLQRYKDGGVSDIRSFAIAEGLTW--EDSAGRVFTKTRDELIEW 735 Query: 763 TKSRATKGVISIKVTERNGLVVG 785 RA G + K R+G G Sbjct: 736 MGDRAGAGRVVPKGFPRSGKFSG 758 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 65/478 (13%), Positives = 153/478 (32%), Gaps = 36/478 (7%) Query: 397 IRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGV--RDGLYYLTEQQ 454 ++ + + L+A L + L+ LTE + Sbjct: 283 VQKSRLIEKIAELLIARKLPLLEDIRDESAEDVRVVLVPKSRSVDANILMESLFKLTELE 342 Query: 455 AQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFG 514 ++ L++ + L+ +++ + L + +A +L R + + + Sbjct: 343 SRIPLNMNV--LSMGRVPRVMALNEVLSEWLAHRREVLQRRSRHRLAAIDRRLEILGGYL 400 Query: 515 DKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE 574 N ++ E V + G Q + + R + I+ Sbjct: 401 IA-----YLNIDEVIRIIREEDEPKAVMIERFGLTDVQAEAILNMRLRSLRKLEEFEIRT 455 Query: 575 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE-----ATRGARGRPIVNLLPLEQDE 629 E D L L S + + +++ E A G+ + Sbjct: 456 E--FDSLSKEKAEIEALLASGD-KQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPDAD 512 Query: 630 RITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS 689 + E+ + + G ++ L ++ ++ DGD L Sbjct: 513 --VEAIQQAMIEKEPITVVISEKGWIR--ALKGHIADTSS----LQFKDGDGLKVSFPAQ 564 Query: 690 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTG--VRGIRLGEGDK-VVSLIVPRGDGAILT 746 D++++F+ GK + G G +R + E D+ V++ V ++ Sbjct: 565 TTDKILIFTTGGKAYTLGGDKLP--GGRGHGEPLRIMVDMENDQDVLTAFVHDPARKLIV 622 Query: 747 ATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVR 806 ++ G G ++ +R K V+++ + + LVV D + ++ + ++ Sbjct: 623 SSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPV----KGDHLAVVGENRKMLV 678 Query: 807 TRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAP 864 + ++ + R +GV L R + V ++ A D+ + DE+ Sbjct: 679 FPLVQVPEMAR-GKGVRLQRYKDGG-VSDIRSFAIAEGLTWEDSAGRVFTKTRDELIE 734 >UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mobile RepID=Q6KHI4_MYCMO Length = 858 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 265/843 (31%), Positives = 442/843 (52%), Gaps = 53/843 (6%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 ++L + +++ + + Y YA +I RALPDVRDGLKPV RR+LY+M+ LG K Sbjct: 4 NELKDKFLLQSLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEK 63 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSARVVGDVIGKYHPHGDS++Y+ +VRM+Q + + L+ GN GSID D AAAMR Sbjct: 64 PFKKSARVVGDVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPAAAMR 123 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RL+KI+ L++D++ +TV F N+D +EK P V+P PNLLVNG+ GIA G AT Sbjct: 124 YTEARLSKISSLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATE 183 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241 IPPHNL EVI+G +A I + +I IE L I GPDFPT II G GI+EA +GRG++ Sbjct: 184 IPPHNLGEVIDGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAFSGRGRIT 243 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 I ++ EV + I++ EIPY V K++L+ +I E+ +K + G++ +RDE+++DG+ Sbjct: 244 ITSKYEV------HKNQIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGI 297 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 +IVI+++ A ++ L +T+LQ+ + N +A+H+ P +MNL D+I AF+ H + + Sbjct: 298 KIVIDLEAGADASKIMKFLMQKTELQLYYSYNNIAIHNNAPVLMNLHDLIQAFLDHVKVI 357 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 T + FEL K R I+E D +IE+IR + Sbjct: 358 QTNKINFELEKLSKRLEIIEGFIKLTEISDQVIEMIRKSEGSK----------------- 400 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 ++ +E QA++I +LRL +L+ + E+ + E +EL Sbjct: 401 ----------------VGVVENLIKIFNFSEIQAESIANLRLYRLSKTDVEEFIKEKQEL 444 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQEDV 539 +I L +L S + + + +++ + R+TEI D++L DLI E+ Sbjct: 445 ETRINFLKTLLSSESEFNAELIKIFKDIKKTYATPRKTEIKDQALKLDVSLSDLIQAEET 504 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V +S GY+K + + +KE+D + L T +L F+++G Sbjct: 505 FVGISRDGYIKR-----FNQKIHDSNEMQTYLLKEDDALIFLSKTLTTGKLLIFTNQGNY 559 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 S+ ++++ E G + + L +E + +L V +F + + + T G KK Sbjct: 560 ISIPIFKIAEEKWKNLGIHLNDFATLLPNEFLIKVLYVDDFSKDFSITLITKKGFGKKVQ 619 Query: 660 LTEFNRLR-TAGKVAIKL-VDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 L EF R AIK DGDEL+ +T+ +++L + + +V +F E+ + G Sbjct: 620 LPEFEVSRENKSYPAIKFKKDGDELLNAFITNDRLDILLVNTKLEVYKFSENDFKTYGIK 679 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 GV+ ++ + I + ++ T++G+ ++ + ++ + Sbjct: 680 AAGVKISDNATKFEISAAIAYSQNDTLVFLTESGHARKINPKKVDILNQKSIKTFLSTSA 739 Query: 778 ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI----VGRNTQGVI-LIRTAEDEN 832 + +G ++ + + + + I ++V EIS +T+G+ I ++ Sbjct: 740 KPSGKIIKYIFNLNDNVDLAIRTTDSIVTINTKEISETESFTNLHTKGIYGAISLGDNSK 799 Query: 833 VVG 835 ++ Sbjct: 800 LIS 802 >UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteobacteria RepID=PARC_PSEAE Length = 754 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 264/808 (32%), Positives = 427/808 (52%), Gaps = 75/808 (9%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + + ++ E + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG D + Sbjct: 5 LDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDAD 64 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAA 119 +KKSAR VGDV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D S AA Sbjct: 65 SKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 124 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 MRYTE RL++ + L+++L + TVD+V N+DGT P V+P ++PNLL+NG++GIAVGMA Sbjct: 125 MRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMA 184 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRG 238 T++PPHNL EV + C+ +D ++ L EH+PGPDFPT A II R +++ Y TGRG Sbjct: 185 TDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRG 244 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD- 297 V +RA VE I++H +P+QV+ ++++E+IA ++ K++ ++ LRDESD Sbjct: 245 SVRMRAVYRVEDGD------IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDH 298 Query: 298 KDGMRIVIEVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFV 355 ++ RIVI + + E ++ +L++ T L+ S+ +N+ + G+P++ +L+ +++ ++ Sbjct: 299 ENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLSEWL 358 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW 415 + R V RR F L K R H+L+ L +A N+D +I +IR P K L+ Sbjct: 359 QFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQP---KAVLMER-- 413 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 + L+E QA ILD RL++L LE K+ Sbjct: 414 --------------------------------FELSEVQADYILDTRLRQLARLEEMKIR 441 Query: 476 DEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDL 533 E +ELL + L +LGS +L +++REEL E +GD RR+ I A + ++ +L Sbjct: 442 GEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETEL 501 Query: 534 ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF 593 + E V V LS +G+V+ + +A + K D ++ + + Sbjct: 502 MPTEPVTVVLSEKGWVRCAKGHDIDA--------AGLSYKAGDGFKAAAPGRSNQYAVFI 553 Query: 594 SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 653 S GR YS+ + LP A +G P+ L +L ++ +A+ G Sbjct: 554 DSTGRSYSLPAHSLPSAR--GQGEPLSGRLTPPPGASFECVLLP---DDDALFVIASDAG 608 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG--EDEVMLFSAEGKVVRFKESSV 711 + AGK + L +G ++ +D + + EG+++ FK S + Sbjct: 609 YGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDL 668 Query: 712 RAMGCNTTGVRGIRLGEGDKVVS--------LIVPRGDGAILTATQNGYGKRTAVAEYPT 763 +G G + I + G++V S ++P G +L A + + E+ Sbjct: 669 PQLG-KGKGNKIIGI-PGERVASREEYLTDLAVLPAGATLVLQAGKRTLSLKGDDLEHYK 726 Query: 764 KSRATKGVISIKVTERNGLVVGAVQVDD 791 R +G + +R ++ + D Sbjct: 727 GERGRRGNKLPRGFQRVDSLLVDIPPQD 754 >UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB60_MYCGA Length = 797 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 247/813 (30%), Positives = 433/813 (53%), Gaps = 53/813 (6%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +++ ++++ + S+ YA +I RALPD+RDGLKPV RRVLY M LG +NK+Y+K Sbjct: 5 KKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRK 64 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SA VG+VIGK+HPHGDS++Y+ +VRM Q + L+D QGN GSIDGD+AAAMRYTE Sbjct: 65 SAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEA 124 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL+ + ++ ++ KETV+FV+N+D +E P ++P+ +PNLLVNGS+GIA G ATNIPP Sbjct: 125 RLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIPPF 184 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245 NL E+I+ + ID + +E +++ +PGPDFPT II GI+ AY TG+GK+ IRA+ Sbjct: 185 NLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIRAK 244 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E D ++V +IP++ NKA +I I E+++ ++ + +RDESD+ G+R+V+ Sbjct: 245 IVNEND------QLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVVL 298 Query: 306 E--VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 + K + V + N LY TQLQ+++ N V + +P M++ + + +++ H ++ Sbjct: 299 QTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTILR 358 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 F+L+K + R ++ L A + ID II +I+ + +A L+ Sbjct: 359 NAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLI------------ 406 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 Y + QA+AI+ LRL +LT + L +E K L Sbjct: 407 ----------------------NKYQFSAIQAEAIVSLRLYRLTNTDILALKEEKKSLDT 444 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLEDLITQEDVVV 541 I + +L + L + ++E L ++ F KRR+ I N IN +I ++++ + Sbjct: 445 NIKQYQLLLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLVINEASIIEKKELYL 504 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 S G +K + + ++ +IK++D++ L+ ++ + + ++ G V Sbjct: 505 VSSVDGLIKTIAYDQNKQLN-----PTSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVV 559 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 + +++ +A G I L ++ +E+I ++ +++ + ++ + + G +K+ + Sbjct: 560 INAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELSDQND--RIVLVSKYGMIKQISVN 617 Query: 662 EFNRLRTAG-KVAIKLVDGDELIGVDLT-SGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 + +++ + L D DEL+ +L E+++ + +RF + V G + Sbjct: 618 DLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNLTGLKSM 677 Query: 720 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 GVR I+L D+V+ + L +N K+ V+ +SRA +G ++ Sbjct: 678 GVRAIKLKTNDQVIGFDQIKNSIDQLVLVKNKQIKKLKVSLIENQSRANQGKSLGLGKDK 737 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 812 LV G + + LV +++I Sbjct: 738 KPLVNGYLLNTKKAALYGFNRDNELVNLELNQI 770 Score = 85.4 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 92/209 (44%), Gaps = 8/209 (3%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 E+ +++ +G +K +++ + ++K+ D L + S ++V + Sbjct: 498 EKKELYLVSSVDGLIKTIA---YDQNKQLNPTSLKIKQDDYLSDLIKVSSLNKVAFITNY 554 Query: 701 GKVVRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRG-DGAILTATQNGYGKRT 756 G VV ++ G + + +K+V L+ + I+ ++ G K+ Sbjct: 555 GNVVVINAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELSDQNDRIVLVSKYGMIKQI 614 Query: 757 AVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVG 816 +V + ++TK + + + + LV + D ++++IT +R ++E+++ G Sbjct: 615 SVNDL-VNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNLTG 673 Query: 817 RNTQGVILIRTAEDENVVGLQRVAEPVDE 845 + GV I+ ++ V+G ++ +D+ Sbjct: 674 LKSMGVRAIKLKTNDQVIGFDQIKNSIDQ 702 >UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma hominis RepID=O52166_MYCHO Length = 933 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 246/812 (30%), Positives = 410/812 (50%), Gaps = 49/812 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + ++ I N+ + + + Y+ +I RA+PD RDGLKPV RR+LY+M L + Sbjct: 9 IQEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNS 68 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + +KKSAR+VGDVIG+YHPHGDS++Y+ +VRMAQ + + L++ GN GSID D AAAM Sbjct: 69 EPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSIDDDPAAAM 128 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL KI+ ++ DL+++ V N+D +E P V+P PNLLVNG+ GIA G AT Sbjct: 129 RYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFAT 188 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL EVI+ +A I + ISIE L E + GPDFPT AIING I++A +G+G++ Sbjct: 189 EIPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGAIINGINEIKKALSSGQGRI 248 Query: 241 YIRARAEVEVDAKTGRE--TIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 I ++ D K + I + EIP+ V K++L+ I + +K++ GI + D++D+ Sbjct: 249 TISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQTDR 308 Query: 299 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHR 358 +G+ I I+++ A + ++ L ++T+L +S+ NMVA+ + +P I+NL + A++ H Sbjct: 309 NGISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAIDNNRPVILNLYSALIAYLSHL 368 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 +EV ++L+K + R I+E D +I LI+ + Sbjct: 369 KEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSK-------------- 414 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + + +E QA AI +LRL KL+ ++ + +E Sbjct: 415 -------------------KGVILALMNKFKFSELQATAIAELRLYKLSRMDQIEFQEEK 455 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN--SADINLEDLITQ 536 K L QI ++L + + ++L ++ Q+ R TEI+ +I+ + L Sbjct: 456 KNLEIQIENCNKLLNDKWEFNQYLIKQLLEIKNQYSKPRLTEISDQKIDKEIDHKLLTKN 515 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 ED + ++ GY K L Y + S ++KEED + N+ IL F++ Sbjct: 516 EDFYLYITKDGYYKKISLKVYTSN-----ELSTFKLKEEDNVFYFDKVNSLSKILFFTNL 570 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 656 G + + + + G+ I +++ LE E+I ++ +T F + + G K Sbjct: 571 GNYFIIDCHLFKDCNWKDLGQHISSIVALESSEKIIRVIEITSFNNYANFILMSKLGYAK 630 Query: 657 KTVLTEFNRLRTAG-KVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA- 713 K L +F + K + D DELI +++ E + + G E+ ++ Sbjct: 631 KVNLRDFENKSSLKTKTCMSFKDDNDELIDAQISNDEKMLFILLNNGMYHLVSENELKVG 690 Query: 714 MGCNTTGVR-GIRL--GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 + G+R + L +V I I+ TQ GY K ++ + +R T Sbjct: 691 ISLKARGIRLLLNLYKHPQLQVSGFITVSKYNNIIYLTQGGYIKCWDTSKLESTTRNTPK 750 Query: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802 ++ + N L + ++ V + M+ TD Sbjct: 751 ML-FTPLKNNILGLQSLAVTLSNLKMLYTDNN 781 >UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobiales RepID=D0B2I0_BRUME Length = 770 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 271/816 (33%), Positives = 414/816 (50%), Gaps = 90/816 (11%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D I V+++ L+ YL YA+S I+ RALPDVRDGLKPVHRR+++AM +L + ++A Sbjct: 10 DGEEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQA 69 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Y K AR+VGDV+GK+HPHGD+++YD +VR+AQ F++RY LVDGQGNFG+IDGD+AAAMRY Sbjct: 70 YAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRY 129 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE R+ ++A L+ + + +DF Y+ ++ P V+P PNLL NGS+GIAVGMATNI Sbjct: 130 TEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNI 189 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLME----------------------HIPGPDFPTA 220 PPHN+ E+ + L I+ D +E L+ + GPDFPT Sbjct: 190 PPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTG 249 Query: 221 AIINGRRG-IEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAE 279 I+ G I EAYRTGRG +RAR E G I+V EIPYQV K+RLIEKIAE Sbjct: 250 GILVEEHGNILEAYRTGRGAFRVRARWHKEE-GNRGTWVIVVTEIPYQVQKSRLIEKIAE 308 Query: 280 LVKEKRVEGISALRDESDKDGMRIVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALH 338 L+ K++ + +RDES +D +RIV+E K R E+++ +L+ T+L+ +NM L Sbjct: 309 LLLAKKLPLLDDIRDESAED-IRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLS 367 Query: 339 HGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELI 397 HG+ P +++L ++ ++ HR+EV+ RR+ F L + R IL +A N+D +I +I Sbjct: 368 HGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRII 427 Query: 398 RHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQA 457 R P + + LT+ QA++ Sbjct: 428 REEDEPKQ-------------------------------------ELMRAFELTDVQAES 450 Query: 458 ILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD-- 515 IL++RL+ L LE ++ E+ +L + +L +L S R + I E++ VRE+FG Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 510 Query: 516 ---KRRTEITANSA---DINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSA 569 KRRT + + +I +E V + +S +G+++ S Sbjct: 511 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLRAMKGHL--------ADFST 562 Query: 570 ARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDE 629 KE D + A T D +L F++ G+ +++ LP G PI L+ +E D+ Sbjct: 563 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGR--GHGEPIRILVDMENDQ 620 Query: 630 RITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS 689 I + K+ + + G +E GK + + DE S Sbjct: 621 DILTAFV---HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVS 677 Query: 690 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGD--KVVSLIVPRGDGAILTA 747 G D + + K++ F S + M GVR + +G V + + G +A Sbjct: 678 G-DHIAVVGENRKMLVFPLSDIPEMTR-GKGVRLQKYKDGGVCDVRTFAIADGLSWQDSA 735 Query: 748 TQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 783 + + +RA+ G + K R+G Sbjct: 736 -DRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 Score = 83.1 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 73/505 (14%), Positives = 162/505 (32%), Gaps = 39/505 (7%) Query: 372 KARDRAHILEALAVALANIDPIIE-LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 + R R H E + I ++ + + L+A L + Sbjct: 271 RVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLLAKKLPLLDDIRDESAEDIR 330 Query: 431 AARPEWLEPEFGVR--DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 + L+ LTE +++ L++ + L+ + +L L + + Sbjct: 331 IVLEPKNRTVDPELLMESLFKLTELESRVSLNMNV--LSHGKVPNVLSLGAVLREWLEHR 388 Query: 489 LRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGY 548 +L + E+ + F N ++ E + Sbjct: 389 KEVLVRRSQFRLAEIEKRLEILGGFLIA-----YLNLDEVIRIIREEDEPKQELMRAFEL 443 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 Q S + R + I++E + + + + + S ++ + Sbjct: 444 TDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVR 503 Query: 609 E----ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV--LTE 662 E TR + R P E I + E + + G ++ L + Sbjct: 504 EKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMI----EREPVTIVVSEKGWLRAMKGHLAD 559 Query: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG-- 720 F+ + +GD+L D+++ F+ GK +++ G G Sbjct: 560 FST--------LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLP--GGRGHGEP 609 Query: 721 VRGIRLGEGDK-VVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 779 +R + E D+ +++ V +L + G G +E +R K V+++K + Sbjct: 610 IRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDE 669 Query: 780 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV 839 L D I ++ + ++ +S+I + R +GV L + + V ++ Sbjct: 670 AKLCQRV----SGDHIAVVGENRKMLVFPLSDIPEMTR-GKGVRLQKYKDGG-VCDVRTF 723 Query: 840 AEPVDEEDLDTIDGSAAEGDDEIAP 864 A D+ D + +E+ Sbjct: 724 AIADGLSWQDSADRTFNRSKEELVE 748 >UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaproteobacteria RepID=A1TLU5_ACIAC Length = 785 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 263/802 (32%), Positives = 398/802 (49%), Gaps = 94/802 (11%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK------ 64 + + + +YL+YA+SV+ GRALPDV DG+KPV RR+L+AM +G + + Sbjct: 20 LGLAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKP 79 Query: 65 -KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSARVVGDV+G++HPHGD + YD +VR+AQ FS RY L+DGQGNFGS DGD AAAMRYT Sbjct: 80 VKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYT 139 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL +IA L+ ++++ TVDFV NYDG+ + P +P ++P L+NG+SGIAVG+AT IP Sbjct: 140 EARLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIP 199 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYRTGRGKVYI 242 HNL E+ + C+A + + ++ E L +PGPD+P I G I++AYRTGRG + + Sbjct: 200 SHNLREIADACVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKV 259 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISA----------- 291 RAR ++E D G+ ++V E+P V+ +++E+I EL K G A Sbjct: 260 RARWKIE-DLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKAT 318 Query: 292 -------LRDESDKD-GMRIVIEVKRDAVGEV-VLNNLYSQTQLQVSFGINMVALH-HGQ 341 +RDES KD +RIV E K V + ++ L + T L+ S IN+ + G+ Sbjct: 319 VLGVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMVGLDGK 378 Query: 342 PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAP 401 P +L+ ++ ++ R++ +TRR+ L K DR HILE L NID +I +IR + Sbjct: 379 PVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRASD 438 Query: 402 TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDL 461 P A + L+++QA+ IL++ Sbjct: 439 EPKAA-------------------------------------LIERFRLSDRQAEDILEI 461 Query: 462 RLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI 521 RL++L LE K+ E KEL ++ +L IL + L ++ +E+E +QF D RRT I Sbjct: 462 RLRQLARLEAIKIEQELKELREEQGKLEDILANPASLRRLMVKEIEADAKQFADARRTLI 521 Query: 522 TANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL 581 A+ ++ + V +S +G+V A++ G K D + Sbjct: 522 QADKRATAEVKVVDEPVTV-VVSQKGWV--------RARQGHGHDAGTFAFKSGDALYGT 572 Query: 582 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE 641 T D ++ F S GRVYS+ V QLP A G+PI L+ LE + Sbjct: 573 FECRTVDTLIAFGSNGRVYSVAVSQLPGAR--GDGQPITTLIDLEAGTQPVHYFA---GP 627 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELI---GVDLTSGED------ 692 + +A + G + GK + L +G++L TSG Sbjct: 628 ANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGSQPLAPAT 687 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 752 V SA G+++ F+ + ++ M G+ I L D + I + G Sbjct: 688 HVCCASAGGRILTFEITELKQMANGGRGLMLIDLEPKDTLAGAAAYTRSVRIAGVGRGGK 747 Query: 753 GK----RTAVAEYPTKSRATKG 770 + R KG Sbjct: 748 ERDETLEIRSLNNARFPRGRKG 769 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 10/194 (5%) Query: 676 LVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR-GIRLGEGDKVVS 734 GD L G D ++ F + G+V S + + + I L G + V Sbjct: 563 FKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITTLIDLEAGTQPVH 622 Query: 735 LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER------NGLVVGAVQ 788 + A+L A GYG AV ++R K +S+ E+ G+ Sbjct: 623 YFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGSQP 682 Query: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848 + + + G ++ ++E+ + +G++LI + + G V + Sbjct: 683 LAPATHVCCASAGGRILTFEITELKQMANGGRGLMLIDLEPKDTLAGAAAYTRSV---RI 739 Query: 849 DTIDGSAAEGDDEI 862 + E D+ + Sbjct: 740 AGVGRGGKERDETL 753 >UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphaproteobacteria RepID=C6XHT3_LIBAP Length = 753 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 275/796 (34%), Positives = 414/796 (52%), Gaps = 68/796 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+ Sbjct: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYT Sbjct: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E R+ ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP Sbjct: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGKVYI 242 HN+ E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG + Sbjct: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 RAR VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +R Sbjct: 253 RARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 Query: 303 IVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRRE 360 IV+ K R ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRRE Sbjct: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V+ RR+ F ++ R IL+ L +A NID II +IR+ P Sbjct: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------------- 414 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 V + LTE Q AIL+LRL+ L LE ++ E Sbjct: 415 ---------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGD-----KRRTEITA---NSADINLED 532 LL + ++ +L S + I E+ V+E F +RRT + Sbjct: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 +I +E + V +S++G+++ + SA KE D + L A+T D IL Sbjct: 514 MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILL 565 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 S+ G+ Y++ L G I L+ L ++ I ++ K+ + ++ Sbjct: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 712 G +E GK +K+ +++ V +G D V + K++ F + Sbjct: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679 Query: 713 AMGCNTTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 770 M GVR +G V+ + G I +A Y + R G Sbjct: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVG 737 Query: 771 VISIKVTERNGLVVGA 786 + K R+G + + Sbjct: 738 SLVPKGFPRSGKFLSS 753 Score = 82.3 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 59/475 (12%), Positives = 144/475 (30%), Gaps = 38/475 (8%) Query: 397 IRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVR--DGLYYLTEQQ 454 ++ + + ++A L + ++ L++ + Sbjct: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336 Query: 455 AQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFG 514 + L++ + L+ +++ L + +A +L + + + Sbjct: 337 TRFPLNMNV--LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394 Query: 515 DKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE 574 N +I + V +S + Q + + R + +IK Sbjct: 395 IA-----YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449 Query: 575 EDFIDRLLVANTHDHILCFSSRGRVYS----MKVYQLPE--ATRGARGRPIVNLLPLEQD 628 E D +L + G+ ++ ++ E + GR + + Sbjct: 450 ELDNLLAEK-EKIDSLL---NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 Query: 629 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLT 688 ++ A L E+ + + G ++ + A+ +GD L Sbjct: 506 DK--ATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHA 557 Query: 689 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR---GIRLGEGDKVVSLIVPRGDGAIL 745 D ++L S +GK ++ + G I L +V+ V +L Sbjct: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 Query: 746 TATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 805 + G +E +R K + + E+ LVV D + ++ + L+ Sbjct: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671 Query: 806 RTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDD 860 + +I + R +GV L + + + +D+ S ++ Sbjct: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSEN 724 >UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z3_MYCS5 Length = 860 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 254/861 (29%), Positives = 434/861 (50%), Gaps = 48/861 (5%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 ++ +I ++++ ++ + Y+ VI RA+PDVRDGLKPVHRR+LY+M LG D++K Sbjct: 4 KEIIEKIITKSVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDK 63 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSAR+VGDVIGKYHPHGD++VY+ ++ +AQ + + L+ GN GSID D AAMR Sbjct: 64 KFKKSARIVGDVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQAAMR 123 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE++LAKIA+ ++ D++K+TV F+ N+D +E P V+P+ PNLLVNGS GIA+GMAT Sbjct: 124 YTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATE 183 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG-KV 240 +PPHNL E+I+ C+ I S L + GPDFPT +I G +GI EA GR K Sbjct: 184 MPPHNLGEIIDACVYKIKHPKASYSELSNFVLGPDFPTGGVIKGTKGIAEALENGRNEKN 243 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I+ + E+ K + I + EIPY V K +L+ +I +++ K ++GI ++D SD+DG Sbjct: 244 KIKLFCKYEIYTKGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDG 303 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+I + ++ E +LN L+S+TQ+Q+++ N + + + P +MNL+++I++++ H + Sbjct: 304 INILITLDINSNEESILNYLFSKTQMQITYSYNNIVIDNNSPTLMNLENLISSYIAHIKN 363 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 V T ++L KA+ R I+ +IELIR Sbjct: 364 VKTLSLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSK---------------- 407 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ++ T+ QA++I +LRL KL+ + E L E E Sbjct: 408 -----------------MGVVNNLIQVFNFTKLQAESIAELRLYKLSQTDKEIYLKEKVE 450 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI--NLEDLITQED 538 + + I + +L + + E++ ++++F R+T+I ++ N DL+ +E Sbjct: 451 VKETINIIENLLNNEKEFNNFLINEIKAIKKEFSVPRKTQIEEKDFEVSYNKLDLVKEEI 510 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + V++S G++K E +KE+D + NT + +LCF++ G Sbjct: 511 INVSISKNGFIKRFSDKVLENN-----EWKNYALKEKDNLVFFSKVNTVNFLLCFTNLGN 565 Query: 599 VYSMKVYQLPEATRGARGRPIVNLL-PLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 + +YQ+ E G I + DE I +++ V++FEE + V + T G K+ Sbjct: 566 YVIVAIYQIQEVKWKDLGNNINLFASDIRPDEEIVSVIEVSDFEENLSVMLGTKQGYFKR 625 Query: 658 TVLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 +L +F R T A+ L + D LI LT+ + ++ + + +F ES + Sbjct: 626 VMLKDFLVSRFTKKYTAMPLNEDDYLIKAKLTNLDSYLVAITENSIISKFSESEIMFYST 685 Query: 717 NTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISI-- 774 G + I GDK+ + + I + + A+ + KG Sbjct: 686 KARGSKAIYFSVGDKLSNFTIASYGDEIFAFSSDLNYFYFNEADIVLTPKNIKGRNIFDK 745 Query: 775 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVV 834 K +N + D + L + + ++ + + V+ + E+V Sbjct: 746 KYKLQNKNYLLFEDALATDFLYFKNTLNKLNQVK---LNHLDKKKSAVLKHKFDNFESVS 802 Query: 835 GLQRVAEPVDEEDLDTIDGSA 855 ++ + + + A Sbjct: 803 LIKSLKKETINNSSKPKENPA 823 >UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6X2_MYCCR Length = 864 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 252/771 (32%), Positives = 405/771 (52%), Gaps = 43/771 (5%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M +I +++ + ++ YA VI RA+PDVRDGLKPV RR+LY+M +LG Sbjct: 1 MKTNLNQIINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKE 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSARVVGDVIGKYHPHGDS++YD +VRM+Q + + LVD GN GSID D AAAM Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+RL +I+ ++ L K + + N+D +EK P V+PT +PNLLVNG+ GIA G AT Sbjct: 121 RYTEVRLEEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL+EVI+G +A I +E I+ L IPGPDFPT I+ GI +A+ G+G++ Sbjct: 181 EIPPHNLSEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGGIVYDNGGISDAFSKGKGRI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + A+ E+ K +I + +IPY + KA LI +I ++ E++V GI + D+SD++G Sbjct: 241 SLVAKYEI--VNKNKDISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I I+++ DA ++V+N L +T +Q+ + N VA+ + PK+++L ++I ++ H + Sbjct: 299 ILISIDLEADANVDLVVNYLLQKTDMQIYYSYNSVAICNNSPKLVSLSEMIKYYLDHLKN 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + + ++L K++ R I++ D +I++IR + Sbjct: 359 IKLKEIDYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSK---------------- 402 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + T+ QA+AI +RL +L+ ++ E L E KE Sbjct: 403 -----------------IGVIKDLIAHFGFTQIQAEAIAQMRLYRLSKIDQENFLSESKE 445 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLITQED 538 L ++I L + + + + + L+ V+ FG R+T+I S IN EDLI E+ Sbjct: 446 LENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQPRKTQILKKDFSIKINHEDLIKDEN 505 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + ++ QGY K L + IK++DF+ L N D I +++ Sbjct: 506 IYFGITQQGYYKKISLKNFSLS-----DLDKYAIKKDDFLILLTKLNLKDKIFLVTNKAN 560 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + + +QL E + G + + +QDE I A + ++E + + + + +G K+ Sbjct: 561 LVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQINISENKNNSNIILVSKHGLAKRV 620 Query: 659 VLTEFNRLRTAGKVAI-KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 L LRT I KL + DELIG LT + + S + ++ E + G N Sbjct: 621 SLDSLFNLRTKKLTNIFKLKEHDELIGAYLTDNLANIAIISNLNRSLKVAEIDIPIYGRN 680 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 768 + GV+ L +G+++ I + + ++ +R Sbjct: 681 SAGVKLATLKKGEQIQLAYPIADGEKIAIIDSWASYEEISNSQITFGARGA 731 Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 79/483 (16%), Positives = 176/483 (36%), Gaps = 31/483 (6%) Query: 393 IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTE 452 E++ + + + + + + + ++ + R+G+ + Sbjct: 245 KYEIVNKNKDISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISID 304 Query: 453 QQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVR-- 510 +A A +DL + L ++ Y + I L S +++ + L+ ++ Sbjct: 305 LEADANVDLVVNYLLQKTDMQIYYSYNSV--AICNNSPKLVSLSEMIKYYLDHLKNIKLK 362 Query: 511 ----EQFGDKRRTEITANSADINLEDLITQEDVVVT-LSHQGYVKYQPLSEYEAQRRGG- 564 + F ++R EI + + + + S G +K Q + Sbjct: 363 EIDYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSKIGVIKDLIAHFGFTQIQAEA 422 Query: 565 ----KGKSAARIKEEDFIDRLLVANTHDHILC-FSSRGRVYSMKVYQLPEATRGARGRPI 619 + ++I +E+F+ +L + + + + + + G+P Sbjct: 423 IAQMRLYRLSKIDQENFLSESKELENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQPR 482 Query: 620 VNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 679 + L++D I I ++ F T G KK L F+ L K AIK Sbjct: 483 KTQI-LKKDFSI-KINHEDLIKDENIYFGITQQGYYKKISLKNFS-LSDLDKYAIK--KD 537 Query: 680 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG---IRLGEGDKVVSLI 736 D LI + + +D++ L + + +V + G + + + +V+ I Sbjct: 538 DFLILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQI 597 Query: 737 VPRGD---GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD 793 + I+ +++G KR ++ TK + +I + + ++GA D+ Sbjct: 598 NISENKNNSNIILVSKHGLAKRVSLDSLFNLR--TKKLTNIFKLKEHDELIGAYLTDNLA 655 Query: 794 QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDG 853 I +I++ ++ +I I GRN+ GV L + E + +A D E + ID Sbjct: 656 NIAIISNLNRSLKVAEIDIPIYGRNSAGVKLATLKKGEQIQLAYPIA---DGEKIAIIDS 712 Query: 854 SAA 856 A+ Sbjct: 713 WAS 715 >UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria RepID=Q21V46_RHOFD Length = 796 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 269/802 (33%), Positives = 396/802 (49%), Gaps = 87/802 (10%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-------Y 63 +N+ + +YL+YA+SV+ GRALPDV DG KPV RR+LY+M+ +G + Sbjct: 24 LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KSAR+VGDV+G++HPHGDS+VYD VRMAQ FS RY L+DG GNFGS DGD AAAMRYT Sbjct: 84 VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYT 143 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RLAKI L+ ++++ TVDF+ NYDG+ + P +P ++P L+NG+SGIAVG+AT IP Sbjct: 144 EARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIP 203 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYI 242 HNL EV + C+A I +S L IPGPD+P II+ I EAYR+GRG + Sbjct: 204 SHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKC 263 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISA----------- 291 RAR ++E D G+ +++ E+P V+ R++E+I EL K G A Sbjct: 264 RARWKIE-DLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKAT 322 Query: 292 -------LRDESDKD-GMRIVIEVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQ 341 +RDES KD +R+V E K + ++ L + T L+ S IN+ + G+ Sbjct: 323 LLSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGR 382 Query: 342 PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAP 401 P +L+ ++ ++ R++ + RR+ L K DR HILE A+ L NID +I +IR A Sbjct: 383 PTQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQAD 442 Query: 402 TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDL 461 P A ++L+++QA+ IL++ Sbjct: 443 EPKAA-------------------------------------LIARFHLSDRQAEDILEI 465 Query: 462 RLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI 521 RL++L LE K+ E L + +L ILGS L ++ +E+E + F D RRT I Sbjct: 466 RLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPSALRRLMIKEIEADAKTFADPRRTLI 525 Query: 522 TANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL 581 A + LE + E V V +S +G+V+ Q E G + K D + Sbjct: 526 QAEKKAV-LEVKVVDEPVTVVVSQKGWVRAQKGWASERAANGVL-PAEYSFKAGDALYDT 583 Query: 582 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE 641 T D +L F S GRVYS+ V LP A G+P+ +LL LE ++ Sbjct: 584 FECRTVDTLLAFGSNGRVYSVAVALLPGAR--GDGQPMTSLLELEAGTQLLYYFA---GP 638 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED--------- 692 + ++++ G + AGK + G+ L +G Sbjct: 639 APATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEILCRPSPVAGGSGATPWPAAT 698 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 752 V SA G+++ F+ S ++ M G+ I L + D++ I + G Sbjct: 699 HVACASAGGRILTFEISQLKTMATGGRGLMLIDLEDKDRLAGACAYTRSVKIEGLGRGGK 758 Query: 753 ----GKRTAVAEYPTKSRATKG 770 R KG Sbjct: 759 PRDETLEIRSLNNARALRGRKG 780 >UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteobacteria RepID=A4JTQ2_BURVG Length = 808 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 256/797 (32%), Positives = 392/797 (49%), Gaps = 77/797 (9%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 + I + +YLDYAMSV+ GR LPDV DG KPV RR+LYAMN +G KSARV Sbjct: 56 RIPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARV 115 Query: 70 VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 129 VGDV+GKYHPHGD + YD +VR+AQ FS+RY L+DGQGNFGS DGD AAAMRYTE RL Sbjct: 116 VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 175 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 A L+A++++ TVDF NYDG + P ++P ++P LL+NG+SGIAVGMAT+IP HNL E Sbjct: 176 FADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLRE 235 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEV 248 V + C I D + +M +PGPD+P A II+ I + Y GRG + +RAR + Sbjct: 236 VADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSL 295 Query: 249 EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEG------------------IS 290 E G+ I V E+P+ V+ +++E+I EL K G + Sbjct: 296 EQ-LARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLD 354 Query: 291 ALRDESDKDG-MRIVIEVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNL 347 ++RD+SD+ +RIV E E ++N L + T L+ + +N+V + G+P+ + Sbjct: 355 SVRDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGI 414 Query: 348 KDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAK 407 + +V R VTRRT L + R HIL+ +A NID +I++IR + P Sbjct: 415 VPALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPK--- 471 Query: 408 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT 467 ++L+E QA+ IL++RL++L Sbjct: 472 ----------------------------------RDLIATFHLSEVQAEDILEIRLRQLA 497 Query: 468 GLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD 527 LE K+ E +L D+ L +L + I +E+E +++FGD RRT I + Sbjct: 498 RLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKFGDDRRTLIESAEKV 557 Query: 528 IN-LEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT 586 + + V + +S G+++ + G S K D + + T Sbjct: 558 TSGAVVPTADDPVTIIVSRSGWLRARSGH--------GIDISTLTFKAGDDLLASIETRT 609 Query: 587 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKV 646 + F + GR Y++ +P G P+ +L+ L+ R+T ++ + ++ Sbjct: 610 STSLAVFDTNGRCYNVASALIPTGR--GDGVPLTSLIELQGGGRLTHVIVI---DQTANY 664 Query: 647 FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRF 706 +A++ G + + AGK L G+ + +G D V + G++V F Sbjct: 665 LIASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAG-DTVSAVCSGGRLVLF 723 Query: 707 KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT-AVAEYPTKS 765 S V+ M GV+ + L + +V++ + G I++ T T + Sbjct: 724 PLSEVKVM-PKGKGVKLMELEARETLVAVAIGDGASCIVSTTSGKPIALTGTALDKYRLH 782 Query: 766 RATKGVISIKVTERNGL 782 RA KG + G Sbjct: 783 RARKGCQLPGKAKPTGF 799 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 21/219 (9%) Query: 625 LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA--IKLVDGDEL 682 +E E++T+ V ++ V + + +G G + GD+L Sbjct: 551 IESAEKVTSGAVVPTADDPVTII-VSRSGW--------LRARSGHGIDISTLTFKAGDDL 601 Query: 683 IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV---RGIRLGEGDKVVSLIVPR 739 + T + +F G+ + + G GV I L G ++ +IV Sbjct: 602 LASIETRTSTSLAVFDTNGRCYNVASALIP-TGR-GDGVPLTSLIELQGGGRLTHVIVID 659 Query: 740 GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMIT 799 L A+ GYG A A+ T+ +A K +++ G V+ D + + Sbjct: 660 QTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEP----GEVMHPPAKIAGDTVSAVC 715 Query: 800 DAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 G LV +SE+ ++ + +GV L+ E +V + Sbjct: 716 SGGRLVLFPLSEVKVMPK-GKGVKLMELEARETLVAVAI 753 >UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hyopneumoniae RepID=Q4A8X9_MYCH7 Length = 846 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 223/792 (28%), Positives = 392/792 (49%), Gaps = 48/792 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M+ + +E+ L ++ Y+ VI RA+PDVRDGLKPV RR+LY+M LG + Sbjct: 1 MNKSLDSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNS 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 K YKKSARVVGDVIGKYHPHGD ++YD +VR+AQ + + LV+ GN GSID D AAM Sbjct: 61 KNYKKSARVVGDVIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+RLA+I+ L+ + K V F N+D +EK P ++P PNLL+NG+ GIA G AT Sbjct: 121 RYTEVRLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 IPPHNL EVI+ + I + I+IE + I GPDFPT I+ G+ GI +A++TG+GK+ Sbjct: 181 EIPPHNLGEVIDATILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKI 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I + ++ K G+ I + IP+ ++K+ LIE+I ++ + ++ GI + D+SD++G Sbjct: 241 KISSDYKI--FEKNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 + I+IE+++D ++++N L +T LQ+ + N VA+ PK++++K++I ++ H R+ Sbjct: 299 VSILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRK 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + FEL K + R I+ D +I++IR + Sbjct: 359 IKLAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSK---------------- 402 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + ++ QA+AI +RL +L+ +E + L+E K Sbjct: 403 -----------------VGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKN 445 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRT--EITANSADINLEDLITQED 538 L IA +++ + D + + L ++ G R+T + IN ++L+ E Sbjct: 446 LEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEF 505 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 ++ G K + ++ DF + N + +++G Sbjct: 506 FYFWITKSGLYKKLDIKNSLP-----DEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGE 560 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + + V+Q+PE + L + +++I ++ FE + + K+ Sbjct: 561 IAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISKFSFAKRM 620 Query: 659 VLTEFNRLRTAGKVAI-KLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717 L + +++ I + +GDELI V L ++L + + + ++ S + N Sbjct: 621 NLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYTRN 680 Query: 718 TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYP-----TKSRATKGVI 772 +TG++ R + + + + ++ N ++ + K + Sbjct: 681 STGIKIFRHRKNEFISASQTIESSESLAVIDFNSQFEKINTENLFFGNKILTPKNFKTKL 740 Query: 773 SIKVTERNGLVV 784 ++ ++ ++ Sbjct: 741 DFSLSPKSIIIY 752 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 78/209 (37%), Gaps = 11/209 (5%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 ++ F T +G KK + +L +GD I + + + + + + + Sbjct: 502 KDEFFYFWITKSGLYKKL---DIKNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNK 558 Query: 701 GKVVRFKESSVRAMG-CNTTGVRGIRLG--EGDKVVS---LIVPRGDGAILTATQNGYGK 754 G++ + + N+ I LG +++S ++ ++ + K Sbjct: 559 GEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISKFSFAK 618 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 R + + K + +I + ++ + I++IT ++ +SEI I Sbjct: 619 RMNLDQLMKIK--QKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPI 676 Query: 815 VGRNTQGVILIRTAEDENVVGLQRVAEPV 843 RN+ G+ + R ++E + Q + Sbjct: 677 YTRNSTGIKIFRHRKNEFISASQTIESSE 705 >UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma RepID=PARC_MYCPN Length = 789 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 244/835 (29%), Positives = 408/835 (48%), Gaps = 58/835 (6%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + + IE+ S+ YA +I RALPD+RDGLKPV RR+LY M +G Sbjct: 1 MEKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPT 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 YKKSAR VG+++GKYHPHGD+++YD IVRM+Q + + GN GSIDGD+AAAM Sbjct: 61 SPYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE RL+ EL+ D+EK+ V FV+N+D +E P V+PT +PNL +NG+SGIA G AT Sbjct: 121 RYTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NI PHN+ E+++G I++ D ++ +++ + GPDFPT ++ + + Y+TG+GK Sbjct: 181 NIAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKF 240 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 I+A+ E + G+ I++ EIPY+ KA ++++I EL+ + ++ + ++ D SD+ G Sbjct: 241 VIQAKY--ETNTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSG 298 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 +RI+I K + ++ L+ TQLQV+F +N + + P + L F+ E Sbjct: 299 IRIIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHE 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ ++L A R I++ L A++ ID II LIR A +AKT L+ Sbjct: 359 LIINSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLI--------- 409 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y T QA+AI+ LRL +LT + + L E KE Sbjct: 410 -------------------------DKYAFTLNQAEAIVSLRLYQLTNTDIKVLFAEQKE 444 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQED 538 L I R++ ++++ + ++QF RR +I + D I ++ Sbjct: 445 LEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDFIEHKE 504 Query: 539 VVVTLSHQG-YVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSR 596 V + +SH G Y K++P K K E D + V D+ +S Sbjct: 505 VGLLISHDGIYFKFEP---------EQLAKHLVEFKSEQDQLIFGGVVQNSDYFFMVTSL 555 Query: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERIT-AILPVTEFEEGVKVFMATANGTV 655 G + ++ +Y+ T+ + L +DE++ A + + E + + + G V Sbjct: 556 GNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLLVLTSQCGMV 615 Query: 656 KKTVLTEFNRLRTAGKV-AIKLVDGDELIGVDLTSGED--EVMLFSAEGKVVRFKESSVR 712 K+ L++ + + L + D+L+ + + + V L S+ F + Sbjct: 616 KRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFATFLAEEIP 675 Query: 713 AMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 + GV+GI+L +KV + + + A++ +G V E SR + G Sbjct: 676 IISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYNFEVVELAVASRMSVGKK 735 Query: 773 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRT 827 I + V + +I+ ++E++ + ++T V +R Sbjct: 736 LI---PKTKTPVSCFAANKHSEIIGHRGKNGSDLFTLNELNRLPKST--VSQMRL 785 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/296 (13%), Positives = 93/296 (31%), Gaps = 33/296 (11%) Query: 584 ANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPI-------VNLLPLEQDERITAILP 636 NT +L + +++ + A AR + + + +I ++ Sbjct: 431 TNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIE 490 Query: 637 VTEFEEGVKV------FMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 690 + ++ + + + +G K + + K + D+LI + Sbjct: 491 KQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFK-----SEQDQLIFGGVVQN 545 Query: 691 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR---LGEGDKVVSLIVPRGDGA---- 743 D + ++ G ++ + + L E +K+V + D Sbjct: 546 SDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQL 605 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD--QIMMITDA 801 ++ +Q G KR +++ +V A + + +++ + Sbjct: 606 LVLTSQCGMVKRVELSKVINTK--QIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSS 663 Query: 802 GTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE 857 + EI I+ GV I+ +E V R A P+ + D + S Sbjct: 664 NSFATFLAEEIPIISNKGIGVKGIKLKAEEKV----RFAMPLQDNDALVVINSDGG 715 >UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=Prochlorococcus marinus RepID=A2BND1_PROMS Length = 813 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 271/853 (31%), Positives = 454/853 (53%), Gaps = 65/853 (7%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 + T ++++EE++ SYL+YAMSVIVGRALPD RDGLKPV RR+++AM LG +K ++K Sbjct: 4 KNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPFRK 63 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 ARVVGDV+GKYHPHGD AVYD +V++ Q FS +Y +DG GNFGSID D AAMRYTE Sbjct: 64 CARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRYTET 123 Query: 126 RLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 RLA IAH+ + ++ ETV+F +N+DG++K PDV+P ++P LL+NGS+GIAVGMATNIPP Sbjct: 124 RLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNIPP 183 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HNL E+++G + + ++DIS + L I GPDFPT + R IEE Y+TG+G + IR Sbjct: 184 HNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRAIEELYQTGKGSITIRG 243 Query: 245 RAEVEV----DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 E K + II+ E+PYQ+NKA IEK+AELV ++ GIS +RDESD+DG Sbjct: 244 VINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDRDG 303 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360 MRIVIE+K+D+ E+V++NLY +T LQ +FG +AL G+P +NLK + F+ R E Sbjct: 304 MRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKKYLNYFLEFREE 363 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + +RT + L+ D+ I E L+ A +I +I +I + +A++ LV Sbjct: 364 TIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEK------- 416 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 ++L+E+QA ++LD+ L+KLT LE ++ +E K Sbjct: 417 ---------------------------FFLSEKQANSVLDMPLKKLTNLEKNQIDNEIKN 449 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQE--- 537 L ++ ++L + L++++ EEL ++++++ R+T+I N + + + Sbjct: 450 LAEKKNYFQKLLNERELLLKLLIEELLILKKKYNVIRKTKIIKNLNQNEELETLNNQILE 509 Query: 538 -----DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN--THDHI 590 + + ++ Y+K LS Y+ G ++ + + N + + Sbjct: 510 DFINKKTKLYIDNRLYLKRMILSNYKKSFEGVNKII------DNKNIQKFICNIEKNTKL 563 Query: 591 LCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 650 + ++ GRV+++ + L + E I + + + + Sbjct: 564 IGITNTGRVFNI---DWESSINKDYKLDNKILGNIHPSE-IINFHSIKKETRN-YLCILN 618 Query: 651 ANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS 710 ++G KK + + KL + + + +++ +++ ++ G++ +F S+ Sbjct: 619 SDGRFKKVLFDKDMIKSNRSFTITKLKNNLKTVDSFISNESKNLIILTSIGRIFKFNLSN 678 Query: 711 --VRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 768 + A + G+ +L +K+VS I ++ G E + + Sbjct: 679 KFLTATSKQSKGLIIAKLLPTEKIVSCCTFHDGENIFLISKQGKIFCINSNEIYCSNEYS 738 Query: 769 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVI-LIRT 827 G ++ K +N + + + + T+ R +++I+ + +I ++ Sbjct: 739 LGYLNEKTQLKNDYFLKIMA--SNHYLDIETNKNKSARLDLNKINFKSNKSNFLIDFLKI 796 Query: 828 AEDENVVGLQRVA 840 DE + R+ Sbjct: 797 DNDEYLENCFRLE 809 >UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Variovorax paradoxus S110 RepID=C5CST5_VARPS Length = 798 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 267/809 (33%), Positives = 400/809 (49%), Gaps = 91/809 (11%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK------- 61 T + + + +++YL+YA+SV+ GRALPDV DG KPV RR+LY+M+ +G + Sbjct: 18 TTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANGTVGA 77 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 KSARVVGDV+G++HPH D A YD +VRMAQ FS RY L DGQGNFGS DGD AAAMR Sbjct: 78 KPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDGDGAAAMR 137 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE RLA+I L+ ++++ TVDF+ NYDG+ + P ++P ++P L+NG+SGIAVG+AT Sbjct: 138 YTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATE 197 Query: 182 IPPHNLTEVINGCLAYID-DEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGK 239 IP HNL E+ + C+A I + +S E L++ +PGPD+P A II+G I +AYRTGRG Sbjct: 198 IPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYRTGRGS 257 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISA-------- 291 + +RAR ++E D G+ ++V+E+P V+ +++E+I E+ K G A Sbjct: 258 LKVRARWKIE-DLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQTQL 316 Query: 292 ----------LRDESDKD-GMRIVIEVKRDAVGEVV-LNNLYSQTQLQVSFGINMVAL-H 338 +RDES KD +R+V E K + + + L +QT L+ S IN+ + Sbjct: 317 KAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTMVGI 376 Query: 339 HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIR 398 G+P +L+ ++ ++ R V +R+ F L K DR HILE + L NID +I +IR Sbjct: 377 DGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVIAIIR 436 Query: 399 HAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI 458 A P A + L+E QA+ I Sbjct: 437 AAEDPKAA-------------------------------------LIARFNLSEVQAEDI 459 Query: 459 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 518 L++RL++L LE K+ + EL + +L ILGS L ++ +E+E + F D RR Sbjct: 460 LEIRLRQLARLEGIKIQQQLDELRTEQKKLEDILGSPAALRRLLVKEIEADAKTFEDPRR 519 Query: 519 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 578 T I A + + E V V +S +G+V+ Q E G K D + Sbjct: 520 TLIQAEKRAVAE-VKVVDEPVTVIVSQKGWVRAQKGWASEKAAGNGGTAPEYSFKSGDTL 578 Query: 579 DRLLVANTHDHILCFSSRG----RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAI 634 + D +L F S RVY++ V LP A G+P+ L+ L+ +T Sbjct: 579 YGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLPGAR--GDGQPVTTLIELDAGTHVTHF 636 Query: 635 LPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED-- 692 G V +A G + + GK I + +G++L L G Sbjct: 637 FA---GPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQLCRPSLVGGASGA 693 Query: 693 -------EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAIL 745 V S G+++ F + ++++ G+ I L D + I Sbjct: 694 EPMPAATHVACASTGGRILTFDIAELKSLPKGGRGLTLIDLDAKDTLAGAAAYTRSVKIE 753 Query: 746 TATQNGYGK----RTAVAEYPTKSRATKG 770 + G + SRA KG Sbjct: 754 GIGRGGKERDETLEIRTLNNARGSRARKG 782 >UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria RepID=PARC_HAEIN Length = 747 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 248/804 (30%), Positives = 412/804 (51%), Gaps = 73/804 (9%) Query: 1 MSDLARE-ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDW 59 M+++ E I + + + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG + Sbjct: 1 MTNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNA 60 Query: 60 NKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAA 118 YKKSAR VGDV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D S A Sbjct: 61 TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 120 Query: 119 AMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178 AMRYTE RL+KI+ L+ +L + TVD+ N+DGT P +P ++P++L+NG++GIAVGM Sbjct: 121 AMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGM 180 Query: 179 ATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGR 237 AT+IPPHN+ E+ + + +D+ ++ ++E + GPDFPT A II+ + I + Y GR Sbjct: 181 ATDIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGR 240 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 G + +RA + E II+ +P+Q + +++I +IAE + K++ + +RDE+D Sbjct: 241 GSIKMRATWKKEDGE------IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEAD 294 Query: 298 -KDGMRIVIEVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAF 354 ++ +RIV+ + + + ++ +L++ T L+ S+ +NM + +P + L +I+ + Sbjct: 295 HENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEW 354 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 + RR VTRR + L K R HILE L +A NID +IE+IRH P K L+A Sbjct: 355 LDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR- 410 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 + L+++QA AIL+LRL+ L LE +L Sbjct: 411 ---------------------------------FNLSDEQADAILNLRLRHLAKLEENQL 437 Query: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD--INLED 532 E EL + L ILGS RL +I++E++ +++ + R +++ I+ D Sbjct: 438 KAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVEREEAKMISESD 497 Query: 533 LITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 + E V V LS G+V+ + + + K D ++ ++ Sbjct: 498 MTPAEPVTVILSEMGWVRCAKGHDID--------PKSLSYKAGDSYLAHACGKSNQAVVF 549 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 S GR Y++ LP A ++G P+ L L I ++ +E +E + MA+ Sbjct: 550 IDSTGRSYALDPLSLPSAR--SQGEPLTGKLNLPTGATIEYVVMASEQQE---LLMASDA 604 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVD-LTSGEDEVMLFSAEGKVVRFKESSV 711 G + AGK I L + +++ L + V+ ++ G+++ F + Sbjct: 605 GYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDL 664 Query: 712 RAMGCNTTGVRGIRL-----GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY--PTK 764 + G + I + + ++++ ++ D A L + Sbjct: 665 PVLS-KGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRKIVLKPEDLQKFRA 723 Query: 765 SRATKGVISIKVTERNGLVVGAVQ 788 R KG + N ++ Sbjct: 724 ERGRKGSTLPRGLHTNLEIMVIEP 747 >UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBL7_9GAMM Length = 749 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 259/794 (32%), Positives = 397/794 (50%), Gaps = 80/794 (10%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 + ++ +YLDY+M VI+ RALP + DGLKPV RR++YAM+ LG +KKSAR Sbjct: 7 EQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSAR 66 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRL 127 VGDVIGKYHPHGDSA Y+ +V MAQ F+ RY LVDGQGN+GS D S AAMRYTE RL Sbjct: 67 TVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESRL 126 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A L+A+LE+ TV++V N+DGT + P +P ++PN+L+NG SGIAVGMATN+ PHNL Sbjct: 127 TGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHNL 186 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARA 246 EV+ C A I D ++ + LM++IP PDFPT +++ R I YRTGRG V +RA Sbjct: 187 GEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRATW 246 Query: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG-MRIVI 305 +E II+ ++PYQV+ +++ E+IA+ ++ K++ + LRDESD + +R+V+ Sbjct: 247 HLEDG------NIIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVL 300 Query: 306 EVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVT 363 + + E ++ +L++ T L+ + M + G+P++ NL I+ ++ +R E V Sbjct: 301 VPRSNRVDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVR 360 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 RR L +R HIL+ L +A N+D II +IR P Sbjct: 361 RRLNHRLHAVNERLHILQGLLIAYLNLDEIIRIIRTEDEP-------------------- 400 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 V + L+E QA+AIL+ RL+ L LE ++ E + L Sbjct: 401 -----------------RPVLMATFALSEAQAEAILNTRLRHLARLEEIQIRAEQEALAA 443 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI--NLEDLITQEDVVV 541 + L +L S +RL+ +I +EL +GD RRT I A + + +L E V + Sbjct: 444 EQQHLHELLQSRERLLTLIADELAADAATYGDARRTVIIEREAAVALDETELTPSEAVTL 503 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGK----SAARIKEEDFIDRLLVANTHDHILCFSSRG 597 LS G++ RGGKG +A K D + ++ + G Sbjct: 504 ILSKMGWI------------RGGKGHAIDGAALTYKNGDAYLTQISGRSNQQACLLADNG 551 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 R Y++ ++ LP A + G P+ + + ++ I+ E + +A NG Sbjct: 552 RSYTLALHGLPSAR--SYGEPLSSSMSIDAS---AHIIAAAIIEPERRYLIAADNGYGFL 606 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGV-DLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 E +GK I I + L GE +++ S EG+V + + Sbjct: 607 IPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPAEEIPELA- 665 Query: 717 NTTGVRGIRLGE------GDKVVSLIVPRGDGAI-LTATQNGYGKRTAVAEYPTKSRATK 769 G + + + + G ++ ++ I L + + R E+ R K Sbjct: 666 KGKGSQTLAIAKKTYDADGIRLAHILAVPRGRDITLHSGKQKLTIRANEREHYLTPRGHK 725 Query: 770 GVISIKVTERNGLV 783 G K R + Sbjct: 726 GNWLPKNYRRIDHI 739 >UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaproteobacteria RepID=PARC_NEIGO Length = 768 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 254/797 (31%), Positives = 388/797 (48%), Gaps = 92/797 (11%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + + +YL+YAMSV+ GRALP+V DG KPV RR+L+AM +G KSARVVG+ Sbjct: 17 LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 132 ++GKYHPHGDS+ Y+ +VRMAQ F+LRY L+DG GNFGS DGD AAAMRYTE RL IA Sbjct: 77 ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 L++++ + TVDF+ NYDG P +P ++P +L+NG+SGIAVGMAT IP HNL EV Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 +A + + LM++IP PDF II + Y TG+G V +RAR E+E Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIE-K 255 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEG------------------ISALR 293 G+ +IV E+P N A+++ +I E K G I +R Sbjct: 256 LARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVR 315 Query: 294 DESD-KDGMRIVIEVKRD-AVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDI 350 DESD + +R+V E K + +N L +QT L+ + +N+V + +P NLK I Sbjct: 316 DESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTI 375 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTAL 410 + ++ R VTRR F L + R HILE +ID +I++IR + P K L Sbjct: 376 LQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDP---KADL 432 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 +A ++ LTE QA+ IL++RL++L LE Sbjct: 433 MA----------------------------------VFGLTEIQAEDILEIRLRQLARLE 458 Query: 471 HEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINL 530 KL E EL ++ L LG + ++I +E++ +QFGD RRT + + L Sbjct: 459 GFKLEKELNELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVL 517 Query: 531 EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLL---VANTH 587 E + + LS +G+++ + + S KE D + + L T Sbjct: 518 TQTAADEPITLILSEKGWIRSRAGHNLDL--------SQTAFKEGDRLKQTLEGPHCFTR 569 Query: 588 DHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVF 647 H RGR YS+ ++P G P+ +L+ L+ + A+L Sbjct: 570 RHPRFI--RGRTYSIDAAEIPGGR--GDGVPVSSLIELQNGAKPVAMLT---GLPEQHYL 622 Query: 648 MATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELI------GVDLTSGEDEVMLFSAEG 701 ++++ G L + AGKV + G+ ++ + + +++ +++ Sbjct: 623 LSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQN 682 Query: 702 KVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGK----RTA 757 + + F ++ M G++ I L G+ + V + IL ++ G R Sbjct: 683 RALAFPIGELKIMA-KGKGLQIIGLNAGESMTHTAV-SSEPEILIESEGRRGAAHKDRLP 740 Query: 758 VAEYPTKSRATKGVISI 774 VA R KG + Sbjct: 741 VALIE-AKRGKKGRLLP 756 >UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammaproteobacteria RepID=A5EV71_DICNV Length = 739 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 235/784 (29%), Positives = 378/784 (48%), Gaps = 72/784 (9%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ + +YLDYAM VI+ RALP + DGLKPV RR++YAM+ LG YKKSAR VG Sbjct: 8 SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRLAKI 130 DV+GKYHPHGDSA Y+ +V MAQ FS RY L+DGQGN+GS D S AAMRYTE +L Sbjct: 68 DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESKLTAY 127 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 AH L+A+L ETVD+ N+DGT + P +P ++PN+L+NG SGIAVGM+T+IPPHN+ E+ Sbjct: 128 AHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGEI 187 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVE 249 + C A + + +S E L++ +P PDFPT + IN R I YRTG G V +RA +E Sbjct: 188 VAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHIE 247 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIEVK 308 ++ I++ E+PYQV+ +++ E+I + ++EK++ + A+RDESD K+ R+V+ + Sbjct: 248 ------KDNIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPR 301 Query: 309 RD-AVGEVVLNNLYSQTQLQVS--FGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 + ++ +L++ T L+ + +NM+ L G+P+I L I+ ++ +R + V RR Sbjct: 302 SHRIDKKRLMQHLFATTDLEKTVRIQLNMIGL-DGKPQIKPLIVILREWLTYREQTVMRR 360 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 + L +R IL L +A +D +I++IR A Sbjct: 361 LSYRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTA------------------- 401 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 LT Q++AIL++RL++L LE ++ E K L+D+ Sbjct: 402 ------------------LMQALPLTAAQSEAILNIRLRQLAKLEENAIVQEEKTLIDEQ 443 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLI--TQEDVVVTL 543 L ++ + D ++ I +EL + + D RRT A L E V + L Sbjct: 444 KSLQNLIDNRDARLQFIADELAADAQNYADPRRTTFIKPDAKTALPARAWQPSEAVTLVL 503 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 S +V+ + + K D + A + + + GR Y++ Sbjct: 504 SKMAWVRLAKTHQVDG--------RTLAYKSGDEFLLQIAAKSDQTAILCGNDGRYYALS 555 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 + + A G P+ + I A + + +A N ++ Sbjct: 556 LANIASAR--GYGEPLSRYFSFAEKTTIVAAAAL---DPEQYYVLAANNAYGFVVKGSDL 610 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 GK + + + L + L E + G+ + F + G + Sbjct: 611 VAKTKKGKAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFPARDLPQQS-KGKGNKI 669 Query: 724 IRLGEGDKVVSL------IVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT 777 + + + + + + I+P +LT+ + +R KGV + Sbjct: 670 MAITQKEWIQGVRLKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCGARGQKGVYLPQPF 729 Query: 778 ERNG 781 Sbjct: 730 RNAD 733 >UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinomycetales RepID=C6WIH8_ACTMD Length = 1143 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 265/776 (34%), Positives = 384/776 (49%), Gaps = 72/776 (9%) Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 128 VV + +GKYHPHGD+A+YD +VR+AQ FSL L+DG GNFGS D D AA RYTE R++ Sbjct: 401 VVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPD-DGPAASRYTEARMS 459 Query: 129 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 188 A L+ +L+++TV+F NYDG+ P V+P PNLLVNG+SGIAVGMATN+ PHNL Sbjct: 460 GAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNLG 519 Query: 189 EVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEV 248 EV+ + D +E LME IPGPD PT ++ G + +AY TGRG V +RA Sbjct: 520 EVVAAARHLVKHPDADLEKLMEFIPGPDLPTGGMLLGLDEVRKAYETGRGVVRMRATVTT 579 Query: 249 EV-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKE-KRVEGISALRDESDK-DGMRIVI 305 + GR+ I V E+PY V ++IEKI + V + KR+ GI+ ++D +D+ +G+R+VI Sbjct: 580 GPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRLVI 639 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 E K + +L +LY T L+ SFGIN + L GQP+ + LK ++ F+ HR EVVTRR Sbjct: 640 ECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKALLEVFLAHRYEVVTRR 699 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 T F RK DR H+++ L AL +ID +I+LIR + AK LV Sbjct: 700 TRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLV-------------- 745 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + L+E QA ILD L++LT + +L E + L +I Sbjct: 746 --------------------STFALSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEI 785 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD-------INLEDLITQED 538 AEL IL L V+ EL V + +RRT + + + + Sbjct: 786 AELSTILDDDKVLRRVVSNELGKVAKDLSAERRTTLLDGDLKEVLAASRTSGPLEVADDP 845 Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 V LS G V +G+ + + D + + +L +SRGR Sbjct: 846 CQVVLSATGLVARTAAES----EEAVEGRKRSGRAKHDAVAATVHTTARGQVLLVTSRGR 901 Query: 599 VYSMKVYQLPEATRG------ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 + V LP +G + G P+ L+ LE ER+ I P+ E + + + T Sbjct: 902 AFKTDVLPLPVLPQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGE-TDSPGLALGTKQ 960 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVD-LTSGEDEVMLFSAEGKVVRFKESSV 711 G VK +R+ I L GDE++G L G++ ++ S+E ++R+ S V Sbjct: 961 GVVKVCAPE--WPVRSDEFEVIGLKAGDEVVGAQWLADGQEALVFVSSEASLLRYAASLV 1018 Query: 712 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG-----AILTATQNGYGKRTAVAEYPTKSR 766 R G G+ GI L VV R D ++ + K T YP K R Sbjct: 1019 RPQGLRGGGMAGITLPGEASVVFFGAVRTDDAEHGEPVVVTSTGQSVKVTPFDLYPAKGR 1078 Query: 767 ATKGVISIKVTE-RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQG 821 AT GV + + + +GLV+ V +T++G V + R+ G Sbjct: 1079 ATGGVRAHRFLKGEDGLVLAWVGARP----AAVTESGAAVELPEIDPR---RDGSG 1127 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 35/73 (47%), Positives = 47/73 (64%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 ++ ++ E++ SYL+YA SVI RALPD RDGLKPVHRR+L++MN + Sbjct: 16 FDSAGAKVIDNSLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPT 75 Query: 61 KAYKKSARVVGDV 73 Y KS+RVVGD Sbjct: 76 SPYVKSSRVVGDC 88 >UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VBP9_9CLOT Length = 759 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 230/794 (28%), Positives = 386/794 (48%), Gaps = 61/794 (7%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 ++ +I V+ E E+ SY+DY+MSVI RALPDVRDGLKPV RR+LY++N L +K + Sbjct: 1 MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLA-GSDKPH 59 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 +K AR+VGD +GKYHPHGDS++Y+ +V MAQ + L LVD GNFGS+DG AAAMRYT Sbjct: 60 RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRYT 119 Query: 124 EIRLAKIAHEL-MADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 E R++K ++ M DL F+ N+DGTE P +P ++PN+LV+GS+GIAVGMATNI Sbjct: 120 EARISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGKVY 241 P HNL EVI+ + Y++D ++ +E L++ + GPDF T IIN + + + Y TG G++ Sbjct: 180 PTHNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIK 239 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQV--NKARLIEKIAELVKEKRVEGISALRDESDKD 299 +R + E+ D GR++I V EIP+ + A+ ++ +AEL + + + + + D DK+ Sbjct: 240 VRGKVEI-RDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKN 298 Query: 300 GMRIVIEVKRDAVGE---VVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 G + I+VK+ E ++N LY + L+ +FG+N+ ++ G+P++M L+ I++ + Sbjct: 299 GECLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYDGKPEVMGLRRILSIYTD 358 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 + + + L + I L A+ ID IIE++R + A+AK L+ Sbjct: 359 FKYGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHGDTS 418 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 TE+QA AIL +RLQKL GLE L Sbjct: 419 NITFRFKGS----------------EADAKFLCFTEKQADAILAMRLQKLIGLEVNALKK 462 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQ 536 E ++ I + ++L S + + + ++ ++E++ R+T I + + + Sbjct: 463 ELEDAEKLIKKYSKLLESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAVE 522 Query: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 +V V L Y+K + Y+ + + + + F+ Sbjct: 523 TEVAVLLDRFYYIKVVDANLYDKNKAQI----------DKDYRFSFKCKNTERVGVFADN 572 Query: 597 GRVYSMKVYQL-----------------PEATRGARGRPIVNLLPLEQDERITAILPVTE 639 ++Y +KV + +G I + +E I + + + Sbjct: 573 NQMYMIKVADIIKLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQ 632 Query: 640 FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSA 699 + + T +G K ++ LR +A + D +I + ED +++ S Sbjct: 633 IID-KNLLFVTKHGQAKLVPGNNYDVLRK--MIAASKQEED-IIFIHDAEMEDFIVVKSM 688 Query: 700 EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 759 G R + S + G +R + + + D++ + V + Sbjct: 689 LGYYARIQISEIPVKGKGAGCIRLVNITDDDEIEEVAVGSTKDSFFVDNT-----EILFT 743 Query: 760 EYPTKSRATKGVIS 773 R +KG Sbjct: 744 RIKACKRGSKGTKL 757 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 88/268 (32%), Gaps = 46/268 (17%) Query: 603 KVYQLPEATRGARGRPIVNLLPLEQDERI----------TAILPVTEFEEGVKVFMATAN 652 K +L E+ + + I ++L +++ I ++ + E + Sbjct: 473 KYSKLLESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAVETEVAVLLDRF 532 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV- 711 +K +++ + +D D + V +F+ ++ K + + Sbjct: 533 YYIKVVDANLYDKNKAQ-------IDKDYRFSFK-CKNTERVGVFADNNQMYMIKVADII 584 Query: 712 -----RAMGCNTTGVRGI--------------RLGEGDKVVSLIVPRG--DGAILTATQN 750 + G G I + + ++ + D +L T++ Sbjct: 585 KLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQIIDKNLLFVTKH 644 Query: 751 GYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 810 G K Y + I +++ ++ + D I++ + G R ++S Sbjct: 645 GQAKLVPGNNYDVLRK------MIAASKQEEDIIFIHDAEMEDFIVVKSMLGYYARIQIS 698 Query: 811 EISIVGRNTQGVILIRTAEDENVVGLQR 838 EI + G+ + L+ +D+ + + Sbjct: 699 EIPVKGKGAGCIRLVNITDDDEIEEVAV 726 >UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria RepID=A0Q573_FRATN Length = 742 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 250/793 (31%), Positives = 416/793 (52%), Gaps = 70/793 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M + + ++ E + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ +G Sbjct: 1 MDLFSSLESTRSVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHL 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAA 119 YKKSAR VGDV+GKYHPHGDSA Y+ +V MAQ FS RY +DGQGN+GSID S AA Sbjct: 61 SKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAA 120 Query: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 MRYTE RL+K A L+ +L+K TVD+ N+DGT P ++P ++PN+L+NG+ GIAVGM+ Sbjct: 121 MRYTESRLSKYAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMS 180 Query: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRG 238 T IPPHN+TE+IN CL + + +IE ++E + PD+P A II+ + I + Y++G G Sbjct: 181 TYIPPHNITEIINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNG 240 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-D 297 + +A E + +++ ++P+QV+ A ++E+IA +K++++ I ++DES D Sbjct: 241 SIRQQAVYEYD-----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDD 295 Query: 298 KDGMRIVI-EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFV 355 K+ ++IV+ + ++ +L + T L+ SF +NM + +P++ NL DI+ ++ Sbjct: 296 KEPVKIVLYSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWL 355 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW 415 +R+ + RR L K DR HILE L +A NID +I++IR+ P+ Sbjct: 356 EYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPS----------- 404 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 G + L+E QA+AIL++RL+KL +E ++ Sbjct: 405 --------------------------GELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIK 438 Query: 476 DEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDL 533 E KEL + L L S + ++++E + + FGD RR++I + + +DL Sbjct: 439 KEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDL 498 Query: 534 ITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCF 593 + E V + LS G+++ + + K ED + N++ ++ F Sbjct: 499 MPSEKVTIILSKAGWIRCAKGENID--------PAGLSYKPEDKPFLVTTGNSNIKLVFF 550 Query: 594 SSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 653 S G+ YSM V +LP A G I +PL++ ++I +I V +A+ +G Sbjct: 551 SKLGKAYSMYVDKLPSAR--GYGEHITTYIPLDKQDQIISIAFVN---AAGYFLIASESG 605 Query: 654 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA 713 + + GK + D D++ + +++ S++G+V+ +S Sbjct: 606 KAFVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFAL 662 Query: 714 MGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT---AVAEYPTKSRATKG 770 + G IRL + DK+ + + R + LT R + Y + + G Sbjct: 663 L-KKGKGKSIIRLDKKDKLKFIELFRANQE-LTLNAGKRFIRIDSKNIETYYSDKPSGGG 720 Query: 771 VISIKVTERNGLV 783 V+ + + + Sbjct: 721 VLLPQGFRKITKI 733 Score = 59.6 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 72/221 (32%), Gaps = 22/221 (9%) Query: 629 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLT 688 E+ A+ + + G ++ + + D+ V Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDP------AGLSYKPEDKPFLVTTG 541 Query: 689 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG-----VRGIRLGEGDKVVSLIVPRGDGA 743 + +++ FS GK + + G I L + D+++S+ G Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLP----SARGYGEHITTYIPLDKQDQIISIAFVNAAGY 597 Query: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 803 L A+++G + T K + V + D +++ I+ G Sbjct: 598 FLIASESGKAFVIPAEDLITNKITGKNIFD------ADDVFKFMPFDQDHKMLAISSQGR 651 Query: 804 LVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 844 ++ + +++ + +G +IR + + + ++ + Sbjct: 652 VIIRDFASFALL-KKGKGKSIIRLDKKDKLKFIELFRANQE 691 >UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNU6_9RICK Length = 746 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 257/792 (32%), Positives = 413/792 (52%), Gaps = 77/792 (9%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 +++ I ++ + YL YA+S I RALPDVRDGLKPVHRR++YAM +L + Sbjct: 1 MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60 Query: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123 KKSARVVGDVIGK+HPHGD +VYD +VR+AQ FS Y LV+GQGNFG++DGD+AAAMRYT Sbjct: 61 KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYT 120 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E +L K + L+AD+E+ETV+F YDG P+++P++ PN+L NGSSGIAVGMAT+IP Sbjct: 121 ETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIP 180 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIIN-GRRGIEEAYRTGRGKVYI 242 PHN+ E+ + D+ + SI+ L++ I GPDFPT I+N ++ I +AY+TGRG I Sbjct: 181 PHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEI 240 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 +++ +VE D G I V EIPY VNK++LIEK+A ++ K+ + + + DESD+ +R Sbjct: 241 KSKYKVE-DLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEK-IR 298 Query: 303 IVIEVK-RDAVGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLKDIIAAFVRHRRE 360 IV+ K R+ E ++N+L+ Q++L+ +NM L+ +PK+MNLK+I+ + ++HR Sbjct: 299 IVLRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYI 358 Query: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 ++ + F+L+K + R IL+ + N++ II++IR++ P Sbjct: 359 ILNNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPK---------------- 402 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 Y T Q +IL++RL+ L +E + E+K Sbjct: 403 ---------------------KELIKKYKFTLIQVDSILEMRLRNLKKIEELDIKKEFKN 441 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGD-----KRRTEITANSADINLEDLIT 535 L + L +IL S + I E V +FGD RR+ + + E Sbjct: 442 LELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDNSTYGPRRSILEKFVKFTDDELESK 501 Query: 536 ---QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILC 592 E++ V+L ++ ++K KG K D + ++ T D I Sbjct: 502 LEVIENINVSLINEKFLK------------SKKGTYKRSEKNSDDVSLIINCKTSDQICL 549 Query: 593 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN 652 S+ G+ Y + L + +G I + L L+ +E+I + E +E + +++ N Sbjct: 550 LSNIGKSYILNCSNLKFGS--TKGFLISSYLKLKDEEKIVDLFVYKEKQE---IILSSQN 604 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE--VMLFSAEG---KVVRFK 707 G + + +GK + D+ G L + E + ++LF + K++ F+ Sbjct: 605 GYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNLKYKLIIFE 664 Query: 708 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 767 V + +GV + G K+ + + +++ + R Sbjct: 665 LKEVPYL-QKGSGVILFKTK-GFKLNNFCSIDDNLSLIDIDSKK--IELGNLKSFLSKRG 720 Query: 768 TKGVISIKVTER 779 G IK+ + Sbjct: 721 KSG-KVIKLKKE 731 >UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H694_9FIRM Length = 749 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 218/741 (29%), Positives = 349/741 (47%), Gaps = 61/741 (8%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + I L+++Y+ YAMSVIV RALP++ DG KP HR++LY M +G KS Sbjct: 28 SVLEDPITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGAR-TKS 85 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQ-PFSLRYMLVDGQGNFGSIDGDS--AAAMRYT 123 A +VG + +PHGD+A+YDT+VRM + SL VD +GNFG AA RYT Sbjct: 86 ANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYT 144 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E +L + EL D++KETVDFV NYDGT P ++P P +L N + GIAVGMA NI Sbjct: 145 EAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNIC 204 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYI 242 NL E+ +A + D I M P PDF I + E Y GRG + + Sbjct: 205 SFNLAELCATTVALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRGSIKV 261 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 RAR V G + + +IP +++KIAELVK +++ IS +RDE+D +G++ Sbjct: 262 RARYNVVP----GENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLK 317 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 + +++KR E ++ LY T L+ SF N L GQP++M +++I+ + R E V Sbjct: 318 LTLDLKRGVDPEKLMAKLYKTTPLEDSFSCNFNVLVSGQPRVMGVREILQEWTAFRMECV 377 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 422 RRT ++L R H+L+ LA L +ID I +IR E L+ Sbjct: 378 RRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLMIG--------- 428 Query: 423 MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 + + E QA + +++L+ L K E ++L Sbjct: 429 -------------------------FGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLE 463 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN---SADINLEDLITQEDV 539 IA+L IL R+ +I EL V +++ RR+EI + E++I V Sbjct: 464 KDIADLNDILAKPARIRRIIINELNDVAKKYAQPRRSEILYDLPEEESGAEEEVIPDYPV 523 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V + +GY+K P A ++KE D I + + L F+ + +V Sbjct: 524 TVFFTREGYLKKIPPQSLRTAG-------AHKLKEGDEIIHQVETRNNVEALFFTDKQQV 576 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 Y +++ +L + G + L +++ E I A++ ++ V A G K Sbjct: 577 YKVRLNELEDGKVAQMGIYLPGRLGMDEGENILAMVITGDYSG--YVLFFFAGGKCAKIP 634 Query: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRA-MGCNT 718 L + + K+ D + L + + E+ + ++ G+++ + + A ++ Sbjct: 635 LASYATKQNRRKLLKAYSDKEPLAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTTRDS 694 Query: 719 TGVRGIRLGEGDKVVSLIVPR 739 GV + L + + S++ Sbjct: 695 QGVAVVTLKKNQTIASVVPAE 715 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 19/205 (9%) Query: 641 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE 700 + T G +KK LRTAG A KL +GDE+I T E + F+ + Sbjct: 519 PDYPVTVFFTREGYLKKIPP---QSLRTAG--AHKLKEGDEIIHQVETRNNVEALFFTDK 573 Query: 701 GKVVRFKESSVRAMGCNTTGVRGIRL------GEGDKVVSLIVP-RGDGAILTATQNGYG 753 +V + + + + G GI L EG+ ++++++ G +L G Sbjct: 574 QQVYKVRLNELED-GKVAQ--MGIYLPGRLGMDEGENILAMVITGDYSGYVLFFFAGGKC 630 Query: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 813 + +A Y TK K + + E + + + + ++ + T AG ++ ++I+ Sbjct: 631 AKIPLASYATKQNRRKLLKAYSDKE---PLAKLLFLPEDTELAIRTSAGRMLLVNTAQIA 687 Query: 814 -IVGRNTQGVILIRTAEDENVVGLQ 837 R++QGV ++ +++ + + Sbjct: 688 AKTTRDSQGVAVVTLKKNQTIASVV 712 >UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular organisms RepID=A7AVY4_BABBO Length = 1051 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 249/999 (24%), Positives = 419/999 (41%), Gaps = 202/999 (20%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 +L + + + +EL S++ YA+S+I+GRALPD RDGLK VHRR+L+AM V+ + Sbjct: 93 ELLHTVQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTP 152 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Y+K A+VVGDV+GKYHPH D +VYD + R++Q F +R LVDG GNFGS D D AAMRY Sbjct: 153 YRKCAKVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRY 211 Query: 123 TEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 TE RL+ + + L+A++ K TVD + N+D TE P V+P+K+P LL+NGSSGIAVG+ATN Sbjct: 212 TECRLSPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATN 271 Query: 182 IPPHNLTEVINGCLAYIDDE-DISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGK 239 IPPHN E++ + ++ E L+ + GPDFPT I+ + + Y TG+G Sbjct: 272 IPPHNPEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGS 331 Query: 240 VYIRARAEVEVDAK-------------------------TGRETIIVHEIPYQVNKARLI 274 + ++A+ E K R +IIV E+PY V + ++ Sbjct: 332 IMLQAKYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVM 391 Query: 275 EKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG----EVVLNNLYSQTQLQVSF 330 I++ V+ + GIS LRDESD+ G+R+VIE+K+ E ++ L + L F Sbjct: 392 LAISKAVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFF 451 Query: 331 GINMVALH--HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA 388 N +AL +P ++L + ++ R + V +R + +A++R +I++ A+A Sbjct: 452 KCNFIALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFN 511 Query: 389 NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLY 448 ID I+ ++R++ + AEA L + Sbjct: 512 KIDDIVHMVRNSSSSAEAMRMLSEKRYG-------------------------------- 539 Query: 449 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 508 L +QA A+L + L +L+ +E +K+ E KEL + I ILG + +I ELE Sbjct: 540 GLNAEQASAVLRMSLSQLSRIERDKIDLEEKELSESIKRYNHILGDESHIYSLIYSELEH 599 Query: 509 VR----EQFGDKRR-----------------------------TEITANSADINLEDLIT 535 +R + + + R E + + ED I Sbjct: 600 IRQNPEKHYTVRHRCTTLSVSGHTSLGDGDVAQDYPPELGGNDEEFVDSISATIAEDHIA 659 Query: 536 Q-----------------------EDVVVTLSHQGYVKYQPLSE--YEAQR--------- 561 E ++ +++ G ++ L + +Q+ Sbjct: 660 NEPGNDPGDLVKQNPDLEGHNPHDEPSLIVMNNYGLMQRIKLDNSFFRSQKSRYIPSSRL 719 Query: 562 -----------RGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA 610 G A I + + V D + S G + + V L Sbjct: 720 QQPYQGQYSIGEGENEDVAPEITQSELQLHYGVCRPGDSCMMISKDGTCFVLPVSALRLC 779 Query: 611 TRGARGRPIVNLLPLEQDERITAILPVTEF--------------------EEGVKVFMAT 650 +G I + L+ E + ++ E + + Sbjct: 780 ---NKGYSIWKQVKLKSPENVEYFTVTSKLLFSQDQNSGVSNCMYKLIMDETTSYLVLIF 836 Query: 651 ANGTVKKTVLTEFNR--LRTAGKVAIKLVDGDEL--IGVDLTSGEDEVMLFSAEGKVVRF 706 +G V F L + ++L + EL I +D++ + + G +R Sbjct: 837 TDGQVGIISTKHFPSGHLYKNPLIRLRLWNNKELKPIFAMFCCPDDDIFVGTLRGYSLRV 896 Query: 707 KESSV------RAMGCNTTGVRGIRLGEGDKVVSLIVPR------------------GDG 742 + + + R + I+L E DKV + + Sbjct: 897 RLNDLLGGMEHRGKTRK----KLIKLKENDKVTCGAILESLSNVENDAKEICRFENYDNR 952 Query: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL-VVGAVQVDDCDQIMMITDA 801 +L +++G K ++E + G + + + A VD D I++++ Sbjct: 953 HLLLLSEHGRAKLLHISELQLRRHGGYGYNITRQSSSTIEGLYAATVVDTDDDILLVSKD 1012 Query: 802 GTLVRTRVSEISIVGRNTQGVILI-RTAEDENVVGLQRV 839 G L R + + R+ + R + + + V Sbjct: 1013 GLLARKDPFTLPVASRHQKMRKFWTRMRAPDRLQYMSPV 1051 >UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial, putative n=5 Tax=Magnoliophyta RepID=B9SK06_RICCO Length = 540 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 226/409 (55%), Positives = 297/409 (72%), Gaps = 3/409 (0%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + + +E +Y+ YAMSV++GRALPDVRDGLKPVHRR+L+AM+ LG K +K Sbjct: 106 DARVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 165 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 K ARVVG+V+GK+HPHGDSAVYD +VRMAQ FSLR L+ G GNFGSID D AAMRYTE Sbjct: 166 KCARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPPAAMRYTE 225 Query: 125 IRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RL + L+ADLE +TVDFV N+D ++K P ++P ++P LL+NGSSGIAVGMATNIP Sbjct: 226 CRLEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVGMATNIP 285 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI EAYRTGRG++ +R Sbjct: 286 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGRGRIIVR 345 Query: 244 ARAEVE-VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302 + EVE +D+KT R +I+ EIPYQ NKA L+EKIAELV+ K ++G+S +RDESD+ GMR Sbjct: 346 GKTEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDESDRSGMR 405 Query: 303 IVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVV 362 IVIEVKR + +VLNNLY T LQ SF NMV + GQPK M LKD++ A R VV Sbjct: 406 IVIEVKRGSDPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKDLLQASY-FRCSVV 464 Query: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALV 411 RR F+L +A++R HI+E + + L N+D +I +I+ A + A A L Sbjct: 465 ERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKEASSNAAASAGLR 513 >UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clostridiaceae RepID=A6TSS8_ALKMQ Length = 930 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 227/864 (26%), Positives = 416/864 (48%), Gaps = 88/864 (10%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 M EI IE+ L+S+Y+ YAMSVIV RALP++ DG KP HR++LY M+ +G Sbjct: 1 MDKSINEIEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGLLTK 59 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFS-LRYMLVDGQGNFGSIDGDSA-- 117 KSA +VG + K +PHGD A+Y+T+V+M + L + VD +GNFG + Sbjct: 60 GR-SKSANIVGTTM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMRE 117 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RYTE +L K E+ ++++K VDFVDNYD T K P ++PT PN+LV + GIAVG Sbjct: 118 ASARYTEAKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVG 177 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTG 236 MA +IP NL EV +AY+ D++I L+E++ PDF T +I +++ Y TG Sbjct: 178 MAEHIPSFNLKEVCEATIAYLKDKEI---DLLEYLKAPDFSTGGELIFNEVTMKQVYHTG 234 Query: 237 RGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 296 RG +R + I ++EIPY + +IE I ELVK+ +++ I+ +RDE+ Sbjct: 235 RGTFKVRGKYRYVKA----DNAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDET 290 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVR 356 DK+G++I I++KR + ++ + T+L+ SFG N L +G PK+M +K+I+ ++ Sbjct: 291 DKNGLKITIDLKRGVNPDDLMVKFFKWTKLEDSFGCNFNILINGHPKVMGVKEILDHWIA 350 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQ 416 R + R+ FE+ K ++ ++L+ L NI ++++I++ + L+ Sbjct: 351 FRLSCLKRQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQ--- 407 Query: 417 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 476 + L QA+ I +++L+ L K + Sbjct: 408 -------------------------------FDLNLAQAEYIAEIKLRSLNQELILKKIK 436 Query: 477 EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI--TANSADINLEDLI 534 E + ++ L +L + E+I +L+ + E +G R+T+I ++ E LI Sbjct: 437 EISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYGIPRKTDIINENEVEVLSEEILI 496 Query: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594 ++ + L+++GY+K L+ + ++K+ D+I + + +L FS Sbjct: 497 ENYNMKLFLTNEGYIKKISLASLRSSGDH-------KLKDNDYIVQEIDGTNRGEVLLFS 549 Query: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 654 ++ VY +K Y+L ++ G+ + N+L L DE I I+ +++ + NG Sbjct: 550 NKETVYKIKAYELEDSKASNLGQYLNNVLGLSSDEIILHIVCTEDYQG--HMLFFFENGK 607 Query: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV-RA 713 K +T + ++A L+ + + E+M S K + F + Sbjct: 608 GAKIPITSYETKTNRKQLANAYSGDSPLVYISSIEEDLEMMATSNLNKTLIFNTEEMSPI 667 Query: 714 MGCNTTGVRGIRLGEG--------------DKVVSLIVPRGDGAI-LTATQNGYGKRTAV 758 N+ GV+ + +G D++++ V + + T+ GY K+ + Sbjct: 668 NSRNSKGVQVFKCKKGISLKKIKPMDEVSPDEMLNQKVLDENPRVKFFLTKGGYIKKIPL 727 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGR- 817 + +++ ++ V+ + ++++ ++ L +T+ E+ Sbjct: 728 TTLVEDEE--------QRLKKDDYIIQEVEGAEEGELLLFSNKQILYKTKARELEEDEDK 779 Query: 818 -NTQGVI---LIRTAEDENVVGLQ 837 + G ++ DE+++ + Sbjct: 780 VASIGQRIRSILALDADEDIIYIT 803 >UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms RepID=C0QRN3_PERMH Length = 1217 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 234/737 (31%), Positives = 381/737 (51%), Gaps = 64/737 (8%) Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 TE RL K+A E++AD++K TVD +N+D + P+V+P K PNL+ NG+SGIAVG++TNI Sbjct: 534 TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVY 241 PPHN +EV + + ++E L + I GPDFPT I I I + Y GRG V Sbjct: 594 PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653 Query: 242 IRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301 ++ +A +E R II++EIPYQVNK LI++IAELV++ + +GIS LRDESD+DG+ Sbjct: 654 VKGKARIER-LPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGI 712 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREV 361 RIV+E+KR+A E VL LY +TQLQ S IN+ L QPK ++LK ++ F++HR +V Sbjct: 713 RIVVELKREADPEKVLKKLYRRTQLQKSIPINLTVLVGKQPKTVDLKGLLQEFIKHRVDV 772 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 +TRRT+F+L KA +R HI+E L AL N D +I+++R + + A++ LV Sbjct: 773 ITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEE-------- 824 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481 + L++ QAQAILD+RL + T LE +KL E +L Sbjct: 825 --------------------------FELSDTQAQAILDMRLSRFTALEGDKLYQEADDL 858 Query: 482 LDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVV 541 +I E RIL S + + V EE++ + E+FGD+R+T I L +E ++ Sbjct: 859 RLKIEEYQRILSSEEEKIRVFIEEIDELLEKFGDERKTVIVEEKEA----GLTFEEHYIL 914 Query: 542 TLSHQGYV---KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + G + + ++ + + + + +K + + + + I + +G+ Sbjct: 915 AVLSSGRILNRRIDDDADKKDIFQKVMNEVVSSVKPGEKLISVQEVESSIPIAFITDKGK 974 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 Y V LP+ + +++ E I E EE + T NG +K+ Sbjct: 975 AYWSLVADLPKGEGR---------INIDEGE-IVGTAFKGEGEEDRLFIL-TKNGIIKRM 1023 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 + ++ I L + D ++ + +++ +G ++ F+ + VR G Sbjct: 1024 SYEDIF-YKSQNHSIIPLAEDDCVVTAFADDHPSLIGVYTRKGDLLLFERNQVRVTGDKA 1082 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY-----PTKSRATKGVIS 773 GV I L EGD V + + I+T T+NGY K E+ K RA KG+++ Sbjct: 1083 KGVEAIDLDEGDTVAGGFLINSEDLIMTVTKNGYTKLVRKEEFFTKEGKVKKRAQKGLMA 1142 Query: 774 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE--ISIVGRNTQGVILIRTAEDE 831 +K+ ++ + AV V+ + + T+ G +++ V + I + R G +++ E + Sbjct: 1143 VKLG-KDDFLSVAVPVELDETVYFSTEKGRVLKLIVDQKRIPVAKRTAMGDPVLKI-EGD 1200 Query: 832 NVVGLQRVAEPVDEEDL 848 VV + +E D Sbjct: 1201 YVVRAVKPKIKSEENDG 1217 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 92/155 (59%), Positives = 112/155 (72%), Gaps = 9/155 (5%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 EI IEEE+KS+YLDYAMSVIVGRA+PDVRDGLKPV RR+LYAMN LG NK YKK Sbjct: 2 SEIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKK 61 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 SARVVG+V+GKYHPHGD++VYD +VRMAQ F+LRY L+ GQGNFGSIDGD AAMRY Sbjct: 62 SARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRYC-- 119 Query: 126 RLAKIAHELMADLEKETV---DFVDNYDGTEKIPD 157 + + + + ++ + D V + + P Sbjct: 120 ----VTGDTLINTDRGLIKIKDIVPDSEENSDNPI 150 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 214/809 (26%), Positives = 386/809 (47%), Gaps = 87/809 (10%) Query: 6 REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65 +I + L +YL YA+ VI RA+ + DG KP HR++L+ ++ + K Sbjct: 665 DNEQEKDIVKVLNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNLYNKR--TK 721 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS--AAAMRYT 123 SA +VG + + HGD ++Y+T+VRMAQ +L Y V+G+GNFG S A MRYT Sbjct: 722 SAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYT 780 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E + I E + K VDFV N+DG ++ P ++PT PN+LVN + GIAVGMA+ P Sbjct: 781 EAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATP 840 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYI 242 NL EV + +AYI D +I + ++ PDF T I + + Y TG+G V + Sbjct: 841 SFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQIYETGQGSVTL 897 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKR---VEGISALRDESDKD 299 RA+ EV+ IIV EIPY N+ +++ I L +E + + I+ + D +D+ Sbjct: 898 RAKYEVK------DNEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRK 951 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHR 358 GM I I++K++ E+++ LY+ T+LQ S+ +NM + P+++++K I+ +++ R Sbjct: 952 GMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFR 1011 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 R ++R + ++ + + H+L A + L +ID ++ + R+A + L Sbjct: 1012 RMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQ------- 1064 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL-LDE 477 + + ++QA+ + +++L+KL ++ + Sbjct: 1065 ---------------------------LYFKIDQEQAEYVSNIKLKKLNKNNIIEITEQQ 1097 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEI---TANSADINLEDLI 534 L +I++L I R+ +I ++L+ +R+++ R+TEI + + I Sbjct: 1098 ITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEIINVEDIPSVTLEDIKI 1157 Query: 535 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 594 + + L+ Q Y+K + + ++K++D I + N D +L F+ Sbjct: 1158 EDFNPTLVLTEQQYIKKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLLFT 1206 Query: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLP--LEQDERITAILPVTEFEEGVKVFMATAN 652 ++G V KVY+L E G + NLL LE DE++ I ++ V N Sbjct: 1207 NKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTKNYKG--SVITVFEN 1264 Query: 653 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 712 G V + L ++ + +L+ + + + + ++L S EGK + S +R Sbjct: 1265 GNVARIDLKQYKTKQNRQVPMDAYNTDSKLVSISVITDDTNILLVSQEGKALIINTSQIR 1324 Query: 713 AM-GCNTTGVRGIRLG-EGDKVVSLIV-PRGDGAILTATQNGYGK-----------RTAV 758 NT GV G+++ E +KV+ I+ + T+ K + ++ Sbjct: 1325 PTKSRNTQGVAGMKIDTEHNKVIGSIIGVTVEDNFDIKTEKSKSKFIMLDDIAPNGKQSM 1384 Query: 759 AEYPTKSRATKGVISIKVTERNGLVVGAV 787 EY +R T+G +++ V+ + Sbjct: 1385 TEYLKGNRNTQGNFIYNTRQKHDKVIELI 1413 Score = 82.7 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 79/506 (15%), Positives = 183/506 (36%), Gaps = 42/506 (8%) Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 421 VT R +E++ I+ N + I++ I+ E+K ++ N + + Sbjct: 895 VTLRAKYEVKDN----EIIVTEIPYTTNRESIVKDIK--TLCRESKDNIIRNITNVIDST 948 Query: 422 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL-EHEKLLDEYKE 480 + + + + + LY T+ Q L++ + L + + E Sbjct: 949 D--RKGMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDE 1006 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540 L + + + D+ + + L + + I+ +D+I Q + Sbjct: 1007 WLKFRRMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQLY 1066 Query: 541 VTLSHQG--YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 + + YV L + + +++ D + N I Sbjct: 1067 FKIDQEQAEYVSNIKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRI------NN 1120 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 + ++ + + + R I+N+ + + + + + + T +KK Sbjct: 1121 IIIQQLQNIRDKYKIPRKTEIINVEDIPS----VTLEDIKIEDFNPTLVL-TEQQYIKKN 1175 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 + F++ + KL D D+++ + +D+++LF+ +G V+ K + +T Sbjct: 1176 RV--FSQSQ-------KLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPST 1226 Query: 719 TG-----VRGIRLGEGDKVVSLIVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATKGVI 772 G + G L +KV+ + + G+++T +NG R + +Y TK + Sbjct: 1227 YGDFLPNLLGEHLENDEKVIYISTTKNYKGSVITVFENGNVARIDLKQYKTKQNRQVPMD 1286 Query: 773 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDE 831 + + +V + D I++++ G + S+I RNTQGV ++ + Sbjct: 1287 AYNTDSK---LVSISVITDDTNILLVSQEGKALIINTSQIRPTKSRNTQGVAGMKIDTEH 1343 Query: 832 -NVVGLQRVAEPVDEEDLDTIDGSAA 856 V+G D D+ T + Sbjct: 1344 NKVIGSIIGVTVEDNFDIKTEKSKSK 1369 >UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=Mycobacterium RepID=A4T3N2_MYCGI Length = 716 Score = 521 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 184/733 (25%), Positives = 309/733 (42%), Gaps = 88/733 (12%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 + + + +E L +A+ + RA+P DGLKP RR+LY M+ Sbjct: 5 IEQNPELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPG 64 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 +KS+++ V G HPHG +++Y MA F R ++DGQG F I GD AA Sbjct: 65 NKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAAD 123 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTE+RL+ L A+L+ V V +DG P V+P + P LL NG+ GIA G AT Sbjct: 124 RYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWAT 183 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +P HN EV+ C A + +++ + L++ IPGPD+ A + G G+ E TGRG Sbjct: 184 KVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLREYITTGRGLF 243 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK-D 299 +R V + I+ E+P V + ++I LV+ + G++ + D +D+ + Sbjct: 244 TVRGTVSV------DGKNCIITELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRN 297 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHR 358 G+RIV+ KR E + + L + T L+ SF ++VAL + P+ +++++IAAF+ R Sbjct: 298 GLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLR 357 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLG 418 VV R+ + L K R H++ L +ID + +IR + T +A+ L Sbjct: 358 DSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQER----- 412 Query: 419 NVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478 + + QA +L L+L++LT L+ +L E Sbjct: 413 -----------------------------FAIDAVQADYVLALQLRRLTKLDVIELQAEA 443 Query: 479 KELLDQIAELLRILGSADRLMEVIREELELVREQFGDK---RRTEITANSADINLEDLIT 535 ++L + A L ++ + D +VI +EL + F RRT + ++ Sbjct: 444 EKLDAEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDRRTVLDYDAT--------- 494 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 V S G + + + + RG S + T I + Sbjct: 495 --PVAANNSEDGPRERKVNAAWRLDDRGVFSDSHGTLLSS---GLGWAVWTDGRIKFTTG 549 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 G + ++ +P + IT +L G + + T G V Sbjct: 550 GGLPFKIR--DIPVSP------------------DITGLLQSGVLAPGSHLALITRRGRV 589 Query: 656 KKTVLTEFNR-----LRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGKVVRFKE 708 + N AG + D +I + + ++ S + V + Sbjct: 590 LRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSWKVT-EV 648 Query: 709 SSVRAMGCNTTGV 721 + + G GV Sbjct: 649 ADIPVKGRGGAGV 661 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 6/144 (4%) Query: 737 VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKV--TERNGLVVGAVQVD-DCD 793 V + T+ G R A + A GV +K+ + V+ A+ V Sbjct: 573 VLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANG 632 Query: 794 QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDG 853 + ++ + T V++I + GR GV + E+ + ++ T+ Sbjct: 633 EAILSISEKSWKVTEVADIPVKGRGGAGVGFHPFGKGEDALLSAAISATGYVRGTRTVRA 692 Query: 854 ---SAAEGDDEIAPEVDVDDEPEE 874 + A A D P + Sbjct: 693 EKRAKASIKGSGADVTPADAAPAD 716 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 9/121 (7%) Query: 747 ATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVR 806 +G K T P K R I V+ ++ + + + +IT G ++R Sbjct: 538 VWTDGRIKFTTGGGLPFKIR------DIPVSPDITGLLQSGVLAPGSHLALITRRGRVLR 591 Query: 807 TRVSEISIVGRNTQGVILIRT---AEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIA 863 + ++ G GV ++ ++ V+ V+ E L + S + Sbjct: 592 IDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSWKVTEVADI 651 Query: 864 P 864 P Sbjct: 652 P 652 >UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LCM1_PLAKH Length = 1173 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 209/924 (22%), Positives = 394/924 (42%), Gaps = 140/924 (15%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-YKK 65 E V I + L ++L YA +I+ R L D RDGLK V RR++++M + K+ YKK Sbjct: 172 EYHDVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKSSYKK 231 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L++G GNFGS++ +AAAMRYTE Sbjct: 232 CARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSVEY-NAAAMRYTEA 290 Query: 126 RLAKIAHELM-ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++++ ++ E +++V N+DG E P V+ +K+P LL+NG SGIAV + +NIP Sbjct: 291 KVSNFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGCSGIAVSILSNIPC 350 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIR 243 HNL +VIN ++++ D +I + L I GPDF T II + ++ Y+TG+G + IR Sbjct: 351 HNLVDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQNVYQTGKGNIEIR 410 Query: 244 ARAEVEVDAK---------------------TGRETIIVHEIPYQVNKARLIEKIAELVK 282 + +E G + +++ +P V LIE + ++ Sbjct: 411 SNVFLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVKPNELIENMINILN 470 Query: 283 EKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVVLN---NLYSQTQLQVSFGINMVA 336 EK+ E + +RDES+K+ MRIV+E+++++ E + + ++ TQ+Q+++ N V Sbjct: 471 EKKNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKYTQMQITYHCNFVC 530 Query: 337 LHH-GQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 + H +LK + + +R + + + + + HI++ + I II Sbjct: 531 IGHQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDLYILIQKKILEIIS 590 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 ++ E K N + L + Q Sbjct: 591 FLQKNQNIEEIKNFFKEN----------------------------------FKLNDYQI 616 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 IL +++QKL +++ +++L ++ + ++ + D++ +I ++L ++ ++G Sbjct: 617 HHILSMKIQKLVNIKNVDFCTHKEQILARMEQNRDLISNVDKIKRLIIDQLTYIKNKYG- 675 Query: 516 KRRTEITANSADINLEDLITQEDVVVTLSHQG-YVKYQPLSEYEAQRRG--GKGKSAARI 572 + + V + + + K L+ A+R G G G A + Sbjct: 676 ------INSVGRFAPPQSVKYRYVYINPPERNHHFKEHSLALVNAERDGPSGYGGDAEDL 729 Query: 573 KEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERIT 632 K E I + + + + ++ LP+A R RG ++ + I Sbjct: 730 KGERKISKKDTLSDEIR----NQEEQQTPVEDPALPKA-RNLRGVKKIDPTTQYRQTYID 784 Query: 633 AIL--PVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI-------------KLV 677 +I + + + T G VKK + E + + + KL Sbjct: 785 SIHTDVKNVYNNDYVLVLITYGGYVKKIKVAEKLKNHQNNIIKLSNVKYILKENEEKKLK 844 Query: 678 DGDELIGVD--------------------------------LTSGEDEVMLFSAEGKVVR 705 DG + L +D+++L ++ K Sbjct: 845 DGGAPVEAANVVESGEEGANSMSAKSSSLNAINCYKVKKSILCRNKDKLLLTDSQNKAYI 904 Query: 706 FKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRGDGAILTA-TQNGYGKRTAVAEY 761 ++ ++ G + I + + + + L ++NG K + Sbjct: 905 LNVYDLQTSSYDSKGTPINQVIHCSKN--ITGMTKFEENKKYLIVCSENGKMKVINNDVF 962 Query: 762 PTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQG 821 K + KG+ K + D ++ T +G +++ ++ I +N+ G Sbjct: 963 LKKKK--KGIRLFKNKKDIHFSYCNFS----DNCIVGTASGHIIQFPLANFKISKKNSLG 1016 Query: 822 VILIRTAEDENVVGLQRVAEPVDE 845 I +++ VV L Sbjct: 1017 NKCINLGKNDKVVDLLAYDNDEKN 1040 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 123/366 (33%), Gaps = 46/366 (12%) Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPA----EAKTALVANPWQLGNVAAMLERA 427 K ++ + + L+N+ I++ +V + + N + + Sbjct: 813 KVAEKLKNHQNNIIKLSNVKYILKENEEKKLKDGGAPVEAANVVESGEEGANSMSAKSSS 872 Query: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQ-AILDL-RLQKLTGLEHEKLLDEYKELLDQI 485 + + + LT+ Q + IL++ LQ + +++ I Sbjct: 873 LNAINCYKVKKSILCRNKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKNI 932 Query: 486 AELLRILGSADRL--------MEVIREELELVREQFGDKRRTEITANSADINLEDLITQE 537 + + + L M+VI ++ L +++ G + N DI+ + Sbjct: 933 TGMTKFEENKKYLIVCSENGKMKVINNDVFLKKKKKGI----RLFKNKKDIHFSYCNFSD 988 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDH------IL 591 + +V + G++ PL+ ++ ++ G + + D + LL + + I+ Sbjct: 989 NCIVG-TASGHIIQFPLANFKISKKNSLGNKCINLGKNDKVVDLLAYDNDEKNVGNFQII 1047 Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 S G + + +L + +G I+ ++D + + E +E Sbjct: 1048 FLSKGGHGKMINLEELKVQKKKGKGYKIMKFKRAKRDAVLQGEVAKEEDKENKN-----H 1102 Query: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 711 VK EF G +L + + D +++ + ++R + + Sbjct: 1103 EKYVK--DADEFL--------------GFKLYDMTKKNDNDFLIMITDHAILIRKNITLL 1146 Query: 712 RAMGCN 717 + Sbjct: 1147 KKKNRK 1152 >UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976864 Length = 664 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 190/718 (26%), Positives = 334/718 (46%), Gaps = 76/718 (10%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 T NIE+ ++++ ++Y+ +++ RALPD+RDGLKPVHRR+LY+M + KSA Sbjct: 4 TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSAN 60 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS--AAAMRYTEIR 126 V G V+ K HPHG + Y ++V M Q +++G+GNFG AA RY+E++ Sbjct: 61 VAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVK 117 Query: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186 L++I+ ++M + +K VDF+DNYDGT K+P+V+P K P++L +SGI VG +++IP N Sbjct: 118 LSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFN 177 Query: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI-EEAYRTGRGKVYIRAR 245 L E+ + YI+ + + + PDF T +I + + GRG V IR + Sbjct: 178 LKELTEAIVKYIETGE-------KTVLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGK 230 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 AE+ + I + EIPY + +IEKI EL K +++ ++ ++D + GM I I Sbjct: 231 AEIV------KNEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 +R+ V+L LY T LQ +F NM L PK++ + I ++ R + R Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTTCIKRG 344 Query: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 ++ + H+L+ L L +ID IE+IR + Sbjct: 345 LSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRS------------------------- 379 Query: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 + + + +QA+ + +++L+ + K +++ + I Sbjct: 380 ----------SQDQIEPNLQKHFGIDFEQAKEVANMKLRNINREYIIKKIEDIDKFEKTI 429 Query: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITA--NSADINLEDLITQEDVVVTL 543 I+ S D++ ++I + L +E++G +RRT+I + L + + V + L Sbjct: 430 ENYKMIVKSQDKINQIIIKGLNETKEKYGKERRTKIVELTEVKPVRLVEEVPNYAVTIYL 489 Query: 544 SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 603 + +GY KG +K D + ++ IL F S + ++ Sbjct: 490 TKEGYCYKF------------KGNQEPNLKPGDEVLKVFETENKAEILIFGSDRVCHKVE 537 Query: 604 VYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF 663 + + E A G + N++ +D+ IT + + A +N + K L F Sbjct: 538 LKDIDETRANALGTYLPNMI---RDKNITIVSYSILDSTHKFIIAAYSNNRIAKINLEAF 594 Query: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 721 RT K + L L+ + + + L + + K+ ++ G N TGV Sbjct: 595 QGNRTILKNSYCLKQD--LLDMITLEDDVSLNLLTDKSKLTVDTKNFNLTNGRNATGV 650 >UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria RepID=Q4N468_THEPA Length = 1014 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 213/886 (24%), Positives = 384/886 (43%), Gaps = 146/886 (16%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + + + + SS+L YA+S+I+GRALPD RDGLK VHRR+++AM++L D N Sbjct: 93 DSEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNG 152 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 Y+K A+VVGDV+G YHPH D +VYD + R++Q F ++ L+DG GNFGS + D AAMR Sbjct: 153 QYRKCAKVVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAAMR 211 Query: 122 YTEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 YTE RL + ++ D+ T+D++ N+D T P V+P ++PN+L+NGSSGIAVG+AT Sbjct: 212 YTECRLTNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLAT 271 Query: 181 NIPPHNLTEVINGCLAYIDD---------------------EDISIEGLMEHIPGPDFPT 219 NIPPHN TEVIN + +I +D ++ + GPDFPT Sbjct: 272 NIPPHNPTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDFPT 331 Query: 220 AAIING-RRGIEEAYRTGRGKVYIRARAEVEVDAK----------------TGRETIIVH 262 +I R + + Y +G+G V I+++ E + R +I+++ Sbjct: 332 GGVIRTTREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIVIN 391 Query: 263 EIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG----EVVLN 318 +IPY +IE I +K + G++ ++DESD++G RIV+E+KR+ + ++ Sbjct: 392 QIPYNTRINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMA 451 Query: 319 NLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAH 378 L T + ++ N + L +P NL I+ ++ R +V+ R+ L K + Sbjct: 452 KLQRLT--EYNYKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKNLD 509 Query: 379 ILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLE 438 I+ A + NI+ II + + Sbjct: 510 IINAYIIIYLNINTII------------------------------------NSFQNHQK 533 Query: 439 PEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRL 498 + V + L + Q ++++ L L++L L + L ++ E QI +L + L Sbjct: 534 GVYKVLKEEFKLNDDQMKSVMRLTLRQLNQLNIDNLKEKSGEYTKQIEFYENVLNNDTNL 593 Query: 499 MEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYE 558 I +L +++ F + +R + ++ + +G S +E Sbjct: 594 YNEIISDLTELKDHFKNIKR-------------------NTLIIYTDEG-------SNFE 627 Query: 559 AQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP 618 G +G + D V + D+I+ ++S GR+ +K+ Q + + Sbjct: 628 TTVEGVEGPEGTSEDKVDP----SVVESDDNIIIYNSLGRISKIKLDQKFYKSNKNKSIR 683 Query: 619 IVNLL---PLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK 675 I N + D I + + N+ A K K Sbjct: 684 ISNPIHSHSTTPDTSIES-------------------------STPDSNKNNRAKKGETK 718 Query: 676 LVDGDEL-IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVS 734 + + L +G + +++++ G+++ S ++ + + + + + Sbjct: 719 IDEAAALEVGYCSNNNSNKIIIILKNGRIMHVNSSKLKLCKKGYDMFKYLGIKNDEMIEY 778 Query: 735 LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQ-----V 789 + + G G T + +K +++K+ +N + + Sbjct: 779 ITSIGKHLGDIIMVGYGNGIMTICNTNRLNLKLSKTKLNLKLNLKNKEIKFFFNYNLNHI 838 Query: 790 DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 + + T G ++ + I + V LIR + + VV Sbjct: 839 SQNPFLFICTKRGYCIKISLRSIMEKFDKKKNVKLIRLHKGDEVVS 884 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 108/531 (20%), Positives = 201/531 (37%), Gaps = 43/531 (8%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 + + + + ++ S R++P + DG KP R+VL+ +K K A+ Sbjct: 712 KHLTYNDFINKELILFSNSDN-ERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQ 767 Query: 69 VVGDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRY 122 + G V + YH HG+ A+ TIV +AQ F S L+ G FG+ G AA+ RY Sbjct: 768 LAGSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRY 826 Query: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 L+ +A L ++ + F+ + D P+ IP +L+NG+ GI G A + Sbjct: 827 IFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKL 885 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 P ++ E++N +D D P P P +G + G+ + + Sbjct: 886 PNYDAREIVNNVRRMLDGLD----------PHPMLP---NYKNFKGTIQ--ELGQNQYAV 930 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKD 299 V R T+ + E+P + E++ E + +K IS ++ Sbjct: 931 SGEIFV-----VDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDT 985 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVR 356 ++ V+++ + + + L+ +LQ + N + L K ++DI+ F Sbjct: 986 TVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFD 1045 Query: 357 HRREVVTRRTIFELRKARDRAHILEALAVA-LANIDPIIELIRHAPTPAEAKTALVANPW 415 R R + + + L A L I I + + + LV + Sbjct: 1046 LRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITI--ENRSKKDLIQMLVQRGY 1103 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 + V A E A E + IL++ L LT + E+L+ Sbjct: 1104 ESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELI 1163 Query: 476 DEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSA 526 + ++ +L R S L + ++ + R ++ A + Sbjct: 1164 KQRDAKGREVNDLKR--KSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 1212 >UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodium RepID=A5K033_PLAVI Length = 1263 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 167/573 (29%), Positives = 285/573 (49%), Gaps = 73/573 (12%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-YKK 65 E V I E L ++L YA +I+ R L D RDGLK V RR++++M + K YKK Sbjct: 149 EYYDVEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKK 208 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L++G GNFGS++ +AAAMRYTE Sbjct: 209 CARIVGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVEY-NAAAMRYTEA 267 Query: 126 RLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++ L+ ++ +E V++V N+DG E P V +K+P LL+NG SGIAV + +NIP Sbjct: 268 KISNFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPC 327 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGR-RGIEEAYRTGRGKVYIR 243 HNL +VIN ++++ + I + L I GPDF T II + ++ Y TGRG + IR Sbjct: 328 HNLVDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIR 387 Query: 244 ---------------------ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK 282 A E G + +++ +P V LIE + ++ Sbjct: 388 SNVFLEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILN 447 Query: 283 EKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVVLNNL---YSQTQLQVSFGINMVA 336 EK+ E + +RDES+K+ MRIV+E++++ E + + L + TQ+Q ++ N V Sbjct: 448 EKKNEHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVC 507 Query: 337 LHH-GQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 + H +LK + + +R + + + + + HI++ + I II Sbjct: 508 IGHQNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEIIS 567 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 ++ E K N + L + Q Sbjct: 568 FLQKNQNIEEIKNFFKKN----------------------------------FQLNDYQI 593 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 Q IL +++QKL +++ +++L ++ + ++ DR+ +I EEL ++ ++G Sbjct: 594 QHILSMKIQKLVNIKNVHFGPHKEKILTRMRDNRDLIADVDRIKRLIIEELAYIKNKYGT 653 Query: 516 KRRTEITANSADINLEDLITQEDVVVTLSHQGY 548 +++ + + + V ++ S G+ Sbjct: 654 -------SSAGRLPTPQGVKYKYVYISPSAGGH 679 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 76/471 (16%), Positives = 158/471 (33%), Gaps = 83/471 (17%) Query: 398 RHAPTPAEAKTALV-------ANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL 450 ++A E K L W+ ++ + + ++ Sbjct: 701 KNAGDTKEEKEKLRSGVDPDEERTWEEQHMGEQHIGEQHIEEQHIEEQHIEEQHIEEQHI 760 Query: 451 TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVR 510 EQ + + Q + E+ E + + +Q E I L + + E V Sbjct: 761 EEQHIEEQ-HIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEVDPPLPKG-KNE-RGVH 817 Query: 511 EQFGDKRRTEITANSAD-----------INLEDLITQEDVVVTLSHQGYVKYQPLSE--- 556 G +R + T +++D+ + V+V +++ GYVK ++E Sbjct: 818 HTGGTQRGAKETDPPPVHYRHTYIDCVHADVKDVYNNDHVLVLITYGGYVKKIKVAEKLK 877 Query: 557 YEAQRRGGKGKSAARIKEEDF--------------------------------------- 577 +KE + Sbjct: 878 NHQNNTIKLSNVKYILKENEERRLNVGGAASGAASGEDSGGENGVATSSANPTSANTANA 937 Query: 578 -----IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERIT 632 + + ++ D +L S+ + Y + V L ++ ++G PI ++ + IT Sbjct: 938 ANCYKVKKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSK--SIT 995 Query: 633 AILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 692 + E + + + NG +K F + + G I+L + I + D Sbjct: 996 GMAKFEE--SKKYLIVCSENGKMKIINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFSD 1050 Query: 693 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA------ILT 746 ++ +A G +++F S+ + N+ G + I LG+ DKVV L+ D I+ Sbjct: 1051 NCIVGTASGHIIQFPLSNFKISKKNSLGNKCISLGKNDKVVDLLTYENDEKSVKKFQIIF 1110 Query: 747 ATQNGYGKRTAVAEYPTKSRATKGVISIKVT--ERNGLVVGAVQVDDCDQI 795 ++ G+GK + E + R KG +K +R + G + + + Sbjct: 1111 LSKGGHGKMVNLGELKVQKRRGKGYKIMKFKRAKRGAPIQGGGEARKEENV 1161 >UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from direct assay n=9 Tax=Plasmodium RepID=Q8I0X3_PLAF7 Length = 1222 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 176/720 (24%), Positives = 324/720 (45%), Gaps = 106/720 (14%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA-YKK 65 E V I E L S+L YA +I+ R L D RDGLK V RR++++M + +K YKK Sbjct: 171 EYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKK 230 Query: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 AR+VG+VIGKYHPHGD +VYD +VR+AQ +L+ G GNFGS++ +AAAMRYTE Sbjct: 231 CARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVEY-NAAAMRYTEA 289 Query: 126 RLAKIAHELM-ADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 +++ ++++ ++ E V+++ N+DG E+ P V+ +KIP LL+NG SGIAV + ++IP Sbjct: 290 KISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPC 349 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI-EEAYRTGRGKVYIR 243 HNL +V N C+ ++ +E+I + L I GPDF T II + I + Y +G+G IR Sbjct: 350 HNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIR 409 Query: 244 ARAEVEVDAKTGR---------------------ETIIVHEIPYQVNKARLIEKIAELVK 282 + E + + II+ +P V LIE I L+ Sbjct: 410 SNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKPNELIENIINLLN 469 Query: 283 EKRVEG---ISALRDESDKDGMRIVIEVKRDAVGEVVLN---NLYSQTQLQVSFGINMVA 336 +K+ E + +RDES+K+ MRIV+E+K+ + E + N L+ T +Q+S+ N V Sbjct: 470 DKKNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVC 529 Query: 337 L-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 395 + + +LK I + +R + + + + + + +I++ + I II Sbjct: 530 IGYENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNIIDLYLIIQNKILDIIT 589 Query: 396 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 455 + + + L + L +Q Sbjct: 590 FFQKNQNIEQIQLYLK----------------------------------NNFKLNPEQI 615 Query: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 + IL ++LQKL +++ + + +++ QI I+ + + +I +EL ++ ++G Sbjct: 616 KYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYG- 674 Query: 516 KRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE 575 ++N + +I Y+ + + ++ + + Sbjct: 675 ---------IHNLNKQCIIPSTPKY----KYSYINSEYHPNFSKNKQIIDTYNTVSTNDN 721 Query: 576 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQ-LPEATRGARGRPIVNLLPLEQDERIT-- 632 I+ + + + V V++ + ++ + N+ +++ +T Sbjct: 722 -NINHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISSDIS-----NNIKNSDKNSSLTKN 775 Query: 633 ----AILPVTE-------------FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK 675 ++P + + + T G +KK + E + + + + Sbjct: 776 QDSDNMMPYRNTYIDSLDNNMKDIYNNDEVLILITYGGYIKKIKINEKLKNHSNNIIKLS 835 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 13/209 (6%) Query: 578 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPV 637 I + ++ D IL + + + + VY L ++ ++G PI ++ ++ IT I Sbjct: 916 IKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSSKN--ITGITKF 973 Query: 638 TEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLF 697 E + + + NG +K F + + G IKL + I + D ++ Sbjct: 974 QE--NKKYLIVCSENGKMKVINNDVFLKRKKKG---IKLFKNKKNIYFSYCNFNDNCIVG 1028 Query: 698 SAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG------AILTATQNG 751 + G +++F SS + N+ G + I L + DKVV L+ + I+ T+NG Sbjct: 1029 TKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKNG 1088 Query: 752 YGKRTAVAEYPTKSRATKGVISIKVTERN 780 +GK + E + + KG +K + Sbjct: 1089 FGKMINLNELKIQKKKGKGHRIMKFKKSK 1117 >UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLW5_FIBSS Length = 846 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 166/762 (21%), Positives = 316/762 (41%), Gaps = 119/762 (15%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 +E +LDYA VI+ RA+P DGLKPV RR+L++M + + Y+K A +VG Sbjct: 18 LERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQKVATIVGR 74 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKIA 131 + YHPHGD+++ D +V + Q + +L+D QGN+G+ GD AAA RY E RL A Sbjct: 75 TM-AYHPHGDASIGDALVGLGQ----KNLLIDTQGNWGNPYTGDRAAAPRYIEGRLTPFA 129 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 +++ ET +++ +YDG + P +P K P LL G GIAVG++T+I PHN E+ Sbjct: 130 VDVV--FNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELC 187 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEVE 249 +A + + ++ PDF T II+ Y G+ GKV +RA+ E Sbjct: 188 EASIACLRGKKFTLY--------PDFFTGGIIDVSD-----YNDGQRGGKVKVRAKIE-- 232 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 K +T+ + EIPY LIE I + + +++ I + D + G+ I++ ++ Sbjct: 233 ---KVDNKTLAIREIPYGTTTVSLIESIVKANDKGKIK-IKHVDDNTS-QGVEILVHLQP 287 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 +V ++ LY+ T + S + PK + + DI+ H +++ E Sbjct: 288 GTDPQVAIDALYAFTDCEKSLSPCTCVIIDKHPKFVGVSDILKLNTEHTVKLLEWELANE 347 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 L+ D+ H+ + + + E+I+ A + + Sbjct: 348 LKHLEDKWHMTTLEKIFIEK--EVYEVIKKAKDREQIIRLVREGLTPYLKRLHRQT---- 401 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 +T+++ ++++ +++++ + EK +EL + IA+ Sbjct: 402 --------------------VTDEEIGKLIEIPIRRISHYDREKADQLLQELEENIAKCK 441 Query: 490 RILGSADRLMEVIREELELVREQF--GDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 + + +++ + + +++ G +RRT+I A +N + + +G Sbjct: 442 Y---NQEHIIDYAVNHFKNILKKYGEGKERRTQI-AEFGKVNAVHVALANQKLYVNRKEG 497 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 +V +K+E + L + +D ++ F + G S KV ++ Sbjct: 498 FV-------------------GTGMKKE---EYLFDVSEYDDLIVFKADG---SFKVVKV 532 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 + + +V + + I ++ + +K+ + R + Sbjct: 533 SDKDFVGKDIILVEKFNKDDERHIYNVIHQDGKDGYAY---------IKRFNVGGVTRDK 583 Query: 668 TA--GKVAIKLVDGDELIGVDLTSGED----EVMLFSAEGKVVRFKES--SVRAMGCNTT 719 GK G +++ + + EV+L + F+ V G Sbjct: 584 DYYMGKN----KPGSKILYMSSNMNGEAEVVEVILKPRPRIKLNFEVDFSEVEVKGRGAI 639 Query: 720 G-------VRGI-RLGEGDKVVSLIVPRGDGAILTATQNGYG 753 G V+ + RL +G + V D + G Sbjct: 640 GNIVSKYPVKTVKRLRKGVSTLGARVLYFDAPSGIVSTQKKG 681 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 106/516 (20%), Positives = 202/516 (39%), Gaps = 45/516 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + + + + + ++M+ + R++P V DGLKP R+VLY K Sbjct: 714 LDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNL---KKD 769 Query: 64 KKSARVVGDVIGKY-HPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAA 118 K + G V G + HG+ ++ TIV +AQ F S ++ GNFGS G A Sbjct: 770 MKVVELAGHVSGTTAYQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCA 829 Query: 119 AMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178 + RY RL A + + + + + ++ DG + +V +P +L+NG+ GI G Sbjct: 830 SARYIYTRLWPFARRVFHNHDDPLLTYNED-DGAKIEQEVYVPVVPMILINGADGIGTGW 888 Query: 179 ATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG 238 +++ P +N +++ +D E P P G G E G+ Sbjct: 889 SSSTPNYNPEDIVENLKRMMDGE-------------PLKPMQPWFRGFTG--EVTAVGQD 933 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK-EKRVEGISALRDESD 297 + + +TG + + + E+P + +K+ +++K EK I +D + Sbjct: 934 RFKFSG-----IIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 988 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALH-HGQPKIMNLKDIIAAFV 355 + VI++ + + L + +L + N+VA K +++DI+ F Sbjct: 989 HTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPERITKYASVEDIMKEFY 1048 Query: 356 RHRREVVTRRTIFELRKARDRAHILEALAVALANIDP---IIELIRHAPTPAEAKTALVA 412 R + RR ++L + + L A + I +I + A AE K Sbjct: 1049 AVRLKYYERRKQYQLSEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVLVAELKEKDFK 1108 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 ++ E + + V Y +L + + LT E Sbjct: 1109 PFPKVKEAVKAGETEPVVEEEEDSESGDTEVLSNSY-------DYLLGMPIWSLTQERVE 1161 Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 508 KL + + +I L+++ S + + + E+ Sbjct: 1162 KLRRQIGDKELEIDTLIKL--SKEDIWKRDLEDFIN 1195 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 115/522 (22%), Positives = 197/522 (37%), Gaps = 50/522 (9%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + + + + ++ S R++P + DGLKP R+VL+ +K K A++ Sbjct: 693 LTYNDFINKELILFSNSDN-ERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLA 748 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG+ ++ TI+ +AQ F S L+ G FG+ G +A+ RY Sbjct: 749 GSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ +A L + T+ F+ + D P+ IP +L+NG+ GI G + IP Sbjct: 808 TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 ++ E++N +D E+ P P P+ +G E + I Sbjct: 867 FDVREIVNNIRRLMDGEE----------PLPMLPS---YKNFKGTIE--ELAPNQYVISG 911 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGM 301 + TI + E+P + E++ E + EK I+ R+ + Sbjct: 912 EVAI-----LNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVRHR 358 + V+++ + + E L+ +LQ S N + L K + DI+ F R Sbjct: 967 KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1026 Query: 359 REVVTRRTIFELRKA-RDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 + R + L + A + L ID I I E L+ + Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKI--IIENKPKKELIKVLIQRGYDS 1084 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL---TEQQAQAILDLRLQKLTGLEHEKL 474 V A E E E + + +LD+ L LT + ++L Sbjct: 1085 DPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTFNYLLDMPLWYLTKEKKDEL 1144 Query: 475 LDEYKELLDQIAELLRILGSADRLME----VIREELELVREQ 512 E ++ L R S L + EELE V + Sbjct: 1145 CRLRNEKEQELDTLKR--KSPSDLWKEDLATFIEELEAVEAK 1184 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 107/533 (20%), Positives = 205/533 (38%), Gaps = 42/533 (7%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L ++ + + + ++M+ + R++P + DGLKP R+VL+ + Sbjct: 785 LDHSTEKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLIHD--- 840 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 +K + G V YH HG+ ++ TIV +AQ F S ++ GNFGS G A Sbjct: 841 QKVVELAGYVSKEAAYH-HGEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGSDA 899 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY RL+ +A ++ L++ ++F + DG P V +P +LVNG+ GI G Sbjct: 900 ASARYIHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPILPMVLVNGADGIGTG 958 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T+IP ++ +++ + D S +G + P P G +G E G Sbjct: 959 WSTSIPNYHPLDIVENLKRRM-GRDSSGDGEEK----PFEPMTPWFRGWKGTPE--PDGP 1011 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK-EKRVEGISALRDES 296 K EV + V E+P ++ K+ E+++ +K I ++ + Sbjct: 1012 NKFKFNGIVEVNPQ---NPNEVDVTELPIRMWTDDFKSKLEEIIRGDKGPSWIKDYKEYN 1068 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALH--HGQPKIMNLKDIIAA 353 D + +I ++ + + + L + +L + N+VA K N ++I+ Sbjct: 1069 DHQTVHFIIALEEKQMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIYKYENPQEIMEE 1128 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP---IIELIRHAPTPAEAKTAL 410 + +R + R L+ L+ ++ I I+ + + E + Sbjct: 1129 YYHYRLNLYGERKKHWLKVYHADYRKLQNQYRFISEIIENKLIVAKKKKSVLVQELRERK 1188 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 + + + A E + + +L + + LT Sbjct: 1189 YEAFPPKSDGRNVKSPDEELGAAENEDEEDAVGGA-------RDYDYLLSMPIWSLTFER 1241 Query: 471 HEKLLDEYKELLDQIAELLRIL------GSADRLMEVIREELELVREQFGDKR 517 +KL + + EL + D E+L L E + R Sbjct: 1242 LDKLKQQIAAKKAEYDELDALSEKDLWCKDLDAFTAEWEEQLRLEDEVRKEIR 1294 >UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opitutaceae RepID=B1ZME1_OPITP Length = 708 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 144/728 (19%), Positives = 290/728 (39%), Gaps = 112/728 (15%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + + ++ +LDYA VI+ RA+P + DGLKPV RR+L+ M + + + K Sbjct: 60 QEEEAPLAVNYRNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEM---EDGRFHKL 116 Query: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEI 125 A +VG + ++HPHGD+++ +V + Q R LV+ QGNFG++ GD AAA RY E Sbjct: 117 ANIVGATM-RFHPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEA 171 Query: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 RL A +++ +T + +YDG + P +P K P +L+ G+ GIAVG+AT I PH Sbjct: 172 RLTAFAKDVL--FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPH 229 Query: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIR 243 N ++ + ++ + I PDFPT + + Y G GKV IR Sbjct: 230 NFNDLCRAAINHLQGKTFRIY--------PDFPTGGVADFSE-----YNDGERGGKVKIR 276 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 A+ E+ + + + E+P+ LIE I + +++ I + D++ D + I Sbjct: 277 AKIEI-----RSKYLLAITELPFGSTTESLIESILAANAKGKIK-IRHV-DDNTADAVEI 329 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 ++ + + + E ++ LY T Q + + +P + +++I+ V + ++ Sbjct: 330 LVHLPQGSDPEKLIQQLYVFTACQTNLSPAACVIEDDKPHFLGVREILKRSVDKTKALLK 389 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 R + + H + + + I I + T + Sbjct: 390 RELEIRQAELEQQWHWDSLERIFIE--ERIYRRIEKSKTWQSVLDEIREGLQPFLKQLRR 447 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 +T+ + ++R+++++ + + K++ Sbjct: 448 P-------------------------VTDDDITRLTEIRIKRISAYNRFQADEAIKKIEA 482 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVV 541 ++ E + L E ++E++G KRRT IN ++++ + Sbjct: 483 ELRETK---ANLKALTAYAVAWFEQLQEKYGKGLKRRTS-YDEIEQINAAEVVSANQRLY 538 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 G++ ++ +++ D ++C G S Sbjct: 539 VNREDGFI-------------------GLNWRQHEYVQD---CTILDSVVCLMRDG---S 573 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 661 +KV ++ E R + P + D ++ + + K+ + Sbjct: 574 LKVSKVAEKVFMGRDIIHCAVFPKDGDPNFYTMVYQDKE---------SGKAFAKRFQIG 624 Query: 662 EFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE------VMLFSAEGKVVR---FKESSVR 712 +R + ++ +G ++ ++++ E E + + G VR F+ V Sbjct: 625 GLSRDK---LYSLVKSEGSRVVYLEISKTEKEMPKKLRIFIDGRSGARVREFDFELDRVP 681 Query: 713 AMGCNTTG 720 + G Sbjct: 682 VSSRSAKG 689 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 109/508 (21%), Positives = 196/508 (38%), Gaps = 46/508 (9%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L I + I + + + ++M+ + R++P V DGLKP R+V+++ K Sbjct: 644 LDHRIRNIPISDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVIFSCFKRKL---KTE 699 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K ++ G V YH HGD A+ TIV +AQ F S L+ G FGS G A Sbjct: 700 IKVHQLQGYVSEHSAYH-HGDQALTMTIVGLAQDFCGSNNVNLLMPNGQFGSRSMGGKDA 758 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY + +I + ++ ++++++ DG P+ +P +L+NG+ GI G Sbjct: 759 ASARYIFTAVPRITRLMFHADDEPLLNYLED-DGQSIEPEWYAPVVPQVLLNGAEGIGTG 817 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T +P +N EV++ + E+ P G G E R Sbjct: 818 WSTFVPNYNPREVVDNLRRRMAGEEY-------------VPMNPWYRGFVGGIEPAGPER 864 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV--KEKRVEGISALRDE 295 +V AR + T + E+P +V E + E V +K + ++ Sbjct: 865 FRVTGIAR-------QLDERTWEITELPVRVWTMTYKEWLEERVVGSDKTPAVLREYKEY 917 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH---GQPKIMNLKDIIA 352 + V+E+ + E+ + +L + + L + K ++I+ Sbjct: 918 HTDTSVHFVVELNPRGMEEIERVGPDTFFKLSTMLSTSNMVLFNPEGKIKKYATPQEILE 977 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 F R RR + + + L A ++ I + R + K A+V Sbjct: 978 DFYFVRLGFYQRRKEHLVDQLKLVYDRLSNQARFVSMI-----IARELSVSNKKKAAIVE 1032 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 QL A A + E +E + + T+ +L + + LT E Sbjct: 1033 ELRQLKFQAFPKVEAKAKSVTEEAVEDQEEPDEPANSNTD--YDYLLSMAIYSLTQERVE 1090 Query: 473 KLLDEYKELLDQIAELLRILGSADRLME 500 +LL E ++ L + S L + Sbjct: 1091 RLLKERDHTETELKIL--LGRSPQNLWD 1116 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 111/539 (20%), Positives = 209/539 (38%), Gaps = 68/539 (12%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++ + + + ++ S R++P + DGLKP R+VL+ +K K A++ Sbjct: 828 LSYNDFINKELILFSNSDN-ERSIPSLVDGLKPGQRKVLFTCLKRN---DKREVKVAQLA 883 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG+ A+ TIV +AQ F S ++ G FG+ G AA+ RY Sbjct: 884 GSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRYIF 942 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ +A L ++ + F+ + D + P+ IP +LVNG+ GI G A IP Sbjct: 943 TMLSPLAKLLFPAVDSNLLKFLYD-DNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPN 1001 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +++ E++N + ++ P P+ G +G+ + G+ + + Sbjct: 1002 YDVREIVNNINRMLSRQE----------PLQMLPS---YKGFKGVI--HELGQNQYLVSG 1046 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGM 301 V + T+ + E+P + E + E + +K IS ++ + Sbjct: 1047 EVSV-----IDKNTVEITELPVRTWTQAYKESVLEPMLQGSDKTPALISDYKEYHTDTTV 1101 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMV----------ALHHGQ---PKIMNLK 348 + ++ + + + + L+ +LQ S N + L + +++ Sbjct: 1102 KFLVRMSEEKLAQAEAAGLHKVFKLQSSLTCNSMVTACFHRPEHVLFDHMGCLKRYESVQ 1161 Query: 349 DIIAAFVRHRREVVTRRTIFELRKA-RDRAHILEALAVALANIDPIIELIRHAPTPAEAK 407 DI+ F R R + + + A + L I+ I + + E Sbjct: 1162 DILKEFFELRLHYYKLRRDWLVGSLGAEAAKLSNQARFVLEKIEGKISI--ENKSKRELI 1219 Query: 408 TALVANPWQLGNVAAMLERAGDD-----------AARPEWLEPEFGVRDGLYYLTEQQAQ 456 LV ++ VAA + A+ E + + Sbjct: 1220 RMLVQKGFESDPVAAWTRAQEKELRRFQSKREPRQAQEEDEGNDSDSSLDSGSSSGPNFN 1279 Query: 457 AILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLME----VIREELELVRE 511 IL++ L LT + E+LL + ++ EL R S + L + V EELE + Sbjct: 1280 YILNMPLWCLTKEKVEELLKQRDLKRGELNELQR--KSPEDLWKEDLAVFVEELEKLEA 1336 >UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteria RepID=D1N6B5_9BACT Length = 877 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 177/717 (24%), Positives = 294/717 (41%), Gaps = 114/717 (15%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + ++L+YA VI RA+PDV DGLKPV RRVL+A+ + ++ K A VVG+ Sbjct: 48 FRTMMDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGN 104 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + YHPHG++++ D +V +A + + QGNFG+I G AAA RY E L+ + Sbjct: 105 TM-HYHPHGNASIEDALVVLA----NKEYYITRQGNFGNILTGSPAAAGRYIECSLSPLG 159 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 HE++ + +FVD YDG P +P K+P+LL+ GS GIAVGMAT I PHN E++ Sbjct: 160 HEVL--FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELL 217 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 +A + E+ + PDF +++ R Y G GK+ +RA+ E+ Sbjct: 218 EAEIAVLRGEEFELY--------PDFQQGGLMDVRE-----YNDGNGKITLRAKIEI--- 261 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 GR+ +I+ EIP + L+ I + ++ +++ IS++ D + D + I + R Sbjct: 262 --VGRD-LIIREIPATTSTETLVASIEKAAEKNKIK-ISSVNDYTT-DKVEIKVVPTRGY 316 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 E + LY T VS +NM + +P M++ +++ E + R +L Sbjct: 317 DPEKTMQGLYMYTDCSVSISVNMTVIRENRPVQMSVSEVLRRNADKLLEYLKRELEIDLA 376 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 K D H + N I + I + E T + A ++ Sbjct: 377 KQEDLFHAKTLAQIFFEN--RIYKKIEECKSEKEEYTEVHAGLAPFRHLLRR-------- 426 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 +T+Q +L L +++++ + EK E E+L ++ E+ + Sbjct: 427 -----------------DVTDQDIDKLLALPVRRISRFDIEKNQRELAEVLAKMEEIKKN 469 Query: 492 LGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 LGS L + L + +++G RRTEI + I + + + G+ Sbjct: 470 LGS---LKKYAINYLRKLLDKYGKDFPRRTEI-------EHFEKIDRREAALNNIKVGWD 519 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 + G IK +D +L N D LC G KV LP Sbjct: 520 RK-------------NGYVGTSIKSDD----ILACNEFDRFLCVEKSGSY---KVIALPP 559 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA 669 I L + + T + + K K+T + F + Sbjct: 560 EKL-----FIGKLYDFRKYDAATEFGVIYRETKSGKY-------YGKRTAIGGFILDKEY 607 Query: 670 GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEG-----KVVRFKESSVRAMGCNTTGV 721 + LT D V + + G + + A G+ Sbjct: 608 NLCPVGCKLE------LLTPRADAVYMLTVAGARGKQQQTELNLMELPARSPKARGI 658 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 102/529 (19%), Positives = 200/529 (37%), Gaps = 35/529 (6%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 S + + ++ + + + Y+ R++P++ DG KP R+VLY + Sbjct: 708 SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNL---R 763 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++VG + YH HG+S++ TI+ MAQ F S ++ G FGS G Sbjct: 764 NECKVAQLVGYIAEHSAYHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGK 823 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 A+A RY +LA + + + + ++ N +G + P IP +LVNG GI Sbjct: 824 DASAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIG 882 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G ++ IP +N ++I+ YI+ E P P +G E+ Sbjct: 883 TGYSSFIPNYNYKDIIDNIKRYINKE-------------PLIPMVPWYKDFKGRIES--N 927 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 G+ + + K +T+ + E+P + E + EL+ +++ + I D Sbjct: 928 GKTGYE-----TIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDN 982 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHHGQP--KIMNLKDIIA 352 S + + I++ + + L +L+ + NM + DI+ Sbjct: 983 SSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILK 1042 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 F R + R + + K I+ + I ++ + Sbjct: 1043 EFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRK 1102 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 ++ + + + + + + + +T + +L + + LT + E Sbjct: 1103 GYDPYKDINKIKKEEIFEQELLDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEKVE 1162 Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIR-EELELVREQFGDKRRTE 520 LL + KE ++ L I L ++ + EE + R E Sbjct: 1163 DLLTQLKEKERELEILRNITVETMWLKDIEKVEEAIEFQRNVELSNREE 1211 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 114/526 (21%), Positives = 204/526 (38%), Gaps = 66/526 (12%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 +L E+ + I + + + ++MS V R++P + DGLKP R++LY K Sbjct: 740 DNLDPEMNEIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKL---K 795 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++ V YH HG+ ++ TI+ MAQ F S L+ G FGS G Sbjct: 796 NEIKVAQLAAYVADVSSYH-HGEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRATGGK 854 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 AAA RY L +I + + + ++++ + D + P +P +LVNG+ GI Sbjct: 855 DAAAARYIFTELNEITRTIFNEADDPLLNYLQD-DESTVEPQWYLPVLPMILVNGADGIG 913 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +TNIP +N +++ + E P G G E + Sbjct: 914 TGWSTNIPSYNPLDIVANLRRLMRGE-------------PMEEMNPWYKGWYGDIE--KV 958 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK-IAELVKEKRVEGISALRD 294 G K I R E + TI + E+P + + E +A L EK V+ I + + Sbjct: 959 GPQKFKISGRIE-----QIDDNTIEISEVPVKTWTNTVKEFLLAGLGNEKTVQWIKDMEE 1013 Query: 295 ESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDII 351 + +R V+++ + + + L + +L + + NMVA K +++ DI+ Sbjct: 1014 QHT-TSIRFVVKLSDAEMAKALSVGLLEKFKLVSTISLANMVAFDPHGRIKKYLDVLDIV 1072 Query: 352 AAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANI------------DPIIELIRH 399 F R E +R L + + ++ A + I +I ++ Sbjct: 1073 KDFYFVRLEYYEKRKNHMLEILQHKHSMISEQARFIKMIIDKQLSVANKKKKELIGILEA 1132 Query: 400 APTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQ----- 454 K + + + D A ++ G + L ++ Sbjct: 1133 NKFLKFTKDGRPIEQVVVDDDDDDEDEDVIDGAGGAGVDGIAGGEADISQLNLKEVDENP 1192 Query: 455 ------------AQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 IL + + LT + KLL E ++ +Q+ +L Sbjct: 1193 TNEHRPETVSSSYDYILGMTIWSLTHERYVKLLAEKEKYQNQLQDL 1238 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 103/523 (19%), Positives = 205/523 (39%), Gaps = 47/523 (8%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 V ++ + + ++ + ++ R++P V DG KP R+VL++ + K A++ Sbjct: 703 DVRYDDFINKELILFSRADLM-RSIPSVVDGFKPSQRKVLFSCFKRKLKSD---IKVAQL 758 Query: 70 VGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYT 123 G V YH HG++++ TIV +AQ F S L+ G FG+ G A+ RY Sbjct: 759 SGYVSEHSAYH-HGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYI 817 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 RLA I + + + +D++D DG P+ +P +LVNG+ GI G +T+IP Sbjct: 818 FTRLAPICRVIFPECDDALLDYLDE-DGQVIEPEHYLPILPLVLVNGADGIGTGWSTSIP 876 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYRTGRGKVYI 242 N +++ +DDE +G IEE G + I Sbjct: 877 NFNPRDIVANIRRILDDECTER-------------MHPWYRNFKGTIEEEIVKGEIRYNI 923 Query: 243 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRV---EGISALRDESDKD 299 + E+ T+++ E+P + + + ++ K I+ ++ Sbjct: 924 TGKYEI-----VDETTLVITELPLRSWTTDYKDFLENMLSPKEKNAQPFITDYKEHHTDT 978 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHH--GQPKIMNLKDIIAAFVR 356 + ++ + + + + + + + +L NM A G K + + I+ AFV Sbjct: 979 TVHFIVTMTPENMAKAQKDGIEKKFKLCAKVSTSNMHAFDEKGGITKYSSPEAIMEAFVP 1038 Query: 357 HRREVVTRRTIFELRKAR---DRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVAN 413 R + RR +R+A R +A+ + + I + + E + A Sbjct: 1039 LRLDAYARRRAMLIRQAEFELKRMSNKVRFILAVVDGEMTIGRKKKSVLIEELEAAGYDK 1098 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 + AA + ++ + E +L + L LT + ++ Sbjct: 1099 MPKTAKAAAAADAEPAESGLSDISEEGAPAPADGAS-----YDYLLSMPLWNLTQEKVDE 1153 Query: 474 LLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDK 516 L++E + ++ EL + +L + + + F + Sbjct: 1154 LVEEQRVKTAEVEELHG--TTDKQLWIRDLDAFDAAMDVFDAE 1194 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 107/551 (19%), Positives = 207/551 (37%), Gaps = 46/551 (8%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + I + + + + +++ R++P V DG KP R+VL+ Sbjct: 651 TTVDHSIKKLRYTDFINKELIQFSIYD-TERSIPSVVDGWKPGQRKVLFGCLKRNLV--- 706 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++ G V YH HG++++ TI+ MAQ F S +++ G FGS G Sbjct: 707 GECKVAQLTGYVAEHSAYH-HGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGGK 765 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 A+A RY +L I + + + +++ N +G P IP +LVNGS GI Sbjct: 766 DASAARYIFTKLNPITRLIFVEEDDNILEYQ-NEEGQTIEPMYYIPTIPMVLVNGSEGIG 824 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G ++ IP +N ++I+ Y+++ D+ P + G E Sbjct: 825 TGFSSQIPNYNPLDIIDNLKRYLNNVDMK-------------PMVPWYHKFTGEIE--PN 869 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK--EKRVEGISALR 293 +G + + + + E+P + + L + + I Sbjct: 870 DKGGFDCLGNYQWLDENGL----LEITELPIRKWTHDYRVFLESLEQGVNGKEPLILGFV 925 Query: 294 DESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALHHGQ--PKIMNLKDI 350 D S + + + V + + EV+ + +L+ S NM + + N +I Sbjct: 926 DNSTHESVHFTLNVNPECIEEVINEGVDKVFKLRTSIATTNMTLFDANKKLKRYSNELEI 985 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP--AEAKT 408 I F R +R + + + L ++N I ++ + +AK Sbjct: 986 IRDFAAVRLATYEKRKTYLINNLK-------LLLRRISNQVRFIHMVVNEELVLFKKAKA 1038 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 LVA LG + G + R G +L++ L LT Sbjct: 1039 TLVAELRDLGFDSNTDILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLWSLTL 1098 Query: 469 LEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADI 528 + +KL +E+ + +Q+ LL + + ++ + E ++ + T T + A + Sbjct: 1099 EQVQKLNEEHAQKENQLRILLETTATDMWMDDLNKVE-VAIKMAYQQDEITAPTPSHAAL 1157 Query: 529 NLEDLITQEDV 539 I ++ Sbjct: 1158 MQLTKIKRKAS 1168 >UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella RepID=D1QVZ0_9BACT Length = 978 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 149/729 (20%), Positives = 292/729 (40%), Gaps = 113/729 (15%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + K+ +LDYA VI+ RA+P + DGLKPV RR+L++M + + Y K A +VG Sbjct: 114 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRM---DDGRYNKVANIVGH 170 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + ++HPHGD+++ D +V+M Q + +L+D QGN+G+I GD AAA RY E RL+K A Sbjct: 171 TM-QFHPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFA 225 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 +++ +T D+ +YDG K P +P K P LL G+ GIAVG+++ + PHNL E+ Sbjct: 226 LDVV--FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 283 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEVE 249 + + Y+ ED + PDFPT I+ Y G+ G + +RA+ E Sbjct: 284 DAAIKYLRGEDFQLY--------PDFPTGGAID-----VSKYNDGQRGGVLKVRAKIE-- 328 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 K +T+++ EIP+ LI+ I + + + +++ D++ + I + + Sbjct: 329 ---KLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKIKAKR--VDDNTAAEVEIQVHLAP 383 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 + ++ LY+ + +++ N + +P + + D++ V ++ + Sbjct: 384 GVSSDKTMDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHGVDRTMGLLRKELQIR 443 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 + ++ + + + A EA + Sbjct: 444 RGELLEQLFFASLERIFIEQRIYKEKKFEQAADMNEAVAFVDLKLTPFKP---------- 493 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 D + +T ++++++Q++ +K + + ++AE+ Sbjct: 494 ---------------DFIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAEIE 538 Query: 490 RILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQG 547 L + + +V ++ ++G+ R TEI + I+ ++ + +G Sbjct: 539 HDL---EHMTDVTINWFMFIKNKYGNEHPRHTEIR-SFDTIDSAKVVEANQKLYINRQEG 594 Query: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 ++ +K+++F+ + D I+ F G+ +KV Sbjct: 595 FI-------------------GTGLKKDEFVCN---CSDIDDIIIFYKNGKYKIIKVAD- 631 Query: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR 667 +G + + I ++ E + K+ +T R R Sbjct: 632 --KIFVGKGIIWLQVFKKNDKRTIYNVVYKDGREGYYYM---------KRFNVTSMTRDR 680 Query: 668 TAGKVA-----------IKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC 716 A E+I V L + + + S V Sbjct: 681 EYDLTAGTPGSKVNYFTANPNGEAEIIKVVLEPDPKK----KRQNIFLERDFSKVMIKSR 736 Query: 717 NTTGVRGIR 725 GV + Sbjct: 737 GAKGVILTK 745 >UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria RepID=A4CLF9_9FLAO Length = 907 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 169/737 (22%), Positives = 306/737 (41%), Gaps = 118/737 (16%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + K +LDYA VI+ RA+P + DG KPV RR+++A+ + + Y K A VVG Sbjct: 23 VTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEM---DDGRYNKVANVVGQ 79 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + +YHPHGD+++ D +V++ Q + +L+D QGN+G+I GD AAA RY E RL+K A Sbjct: 80 TM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDGAAASRYIEARLSKFA 134 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 E++ + ++ +YDG +K P +P K P LL G+ GIAVG++T I PHN E+I Sbjct: 135 LEVV--FSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELI 192 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEVE 249 + + ++ + + PDFPTA II+ Y G GKV +RAR Sbjct: 193 DASIKHLQGKRFKLY--------PDFPTAGIID-----IGNYNDGERGGKVRVRARI--- 236 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 A+ + T+++ EIPY N + LI+ I L + + +++ + I++ + Sbjct: 237 --AQQDKNTLVISEIPYGTNTSSLIDSI--LKANDKGKIKIKKIEDNTAAEVEILVHLPS 292 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 + ++ LY+ T + S + +P M + +++ H E++ Sbjct: 293 GISPDKTIDALYAFTACETSISPLGCIIEDNKPVFMGVSEMLRRSTDHTVELLQAELEIL 352 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 L + +++ H + + N I I T A+ Sbjct: 353 LGELQEQWHAASLERIFIEN--RIYRDIEEEETWEGVIAAIGKGLKPHTGHLRR------ 404 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 +TE+ + ++R+++++ + +K + L +IAE Sbjct: 405 -------------------EVTEEDIVRLTEIRIKRISRFDLDKAQEHLDNLEKRIAETK 445 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 L L + + +++ FG R ++I + D I VV+ + YV Sbjct: 446 HHLA---HLTDYAIDYFRELKKNFGAGR-----ERKSEIRVFDEIEATKVVIRNTKL-YV 496 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 + G +++++++ + D I+ F+ G++ +V Sbjct: 497 NREE------------GFIGTSLRKDEYVTD---CSDIDDIIVFTKSGQMMITRVD---- 537 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG---TVKKTVLTEFNRL 666 ++ G+ I++ A+ + + G VK+ +T F Sbjct: 538 -SKTFVGKNIIH----------VAVYKKKDKRTTYNMIYKDGRGGPSYVKRFNVTAF--T 584 Query: 667 RTAGKVAIKLVDGDELIGVDL-TSGEDEVMLF----SAEGKVVRFKES--SVRAMGCNTT 719 R E++ +GE EV+ S K +++ V G N Sbjct: 585 RDKLYDLTTGKAQSEVLYFTANPNGEAEVVTVNLRQSGSIKKLKWDLDFADVMIKGRNAK 644 Query: 720 G-------VRGIRLGEG 729 G V+ I L E Sbjct: 645 GNIVTKYPVKRIELKEK 661 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 118/522 (22%), Positives = 210/522 (40%), Gaps = 56/522 (10%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + ++ + E + + ++M+ + R++P V DG KP R+VL+ +A Sbjct: 734 VDYDVDEMGYTEFVNKELILFSMADNI-RSIPSVMDGFKPSQRKVLFCCFKRNL---RAE 789 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ G V YH HG++++ IV MAQ F S L+ G FG+ G A Sbjct: 790 LKVAQLAGYVSEHSAYH-HGEASLQGCIVNMAQDFVGSNNIHLLSPIGQFGTRLMGGKDA 848 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY L ++ + L+ + + ++ + DG P+ IP +LVNGS GI G Sbjct: 849 ASARYIFTNLEQLTRLIYHPLDNDCLKYL-SEDGQSIEPEWYIPIIPMVLVNGSDGIGTG 907 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRG-IEEAYR-- 234 ++++P +N ++I G I+ E+I+ P G G I E Sbjct: 908 WSSSVPNYNPLDIIKGLRQMINGEEIA-------------PLTPWYRGFTGHIVEKANSR 954 Query: 235 -TGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALR 293 T G ++ EV T T++V E+P + + + L+ I + Sbjct: 955 GTDTGNYIVQGLYEV-----TDDSTLVVSELPVKSWTQTYKQFLEGLLDAGT---IKDFK 1006 Query: 294 DESDKDGMRIVIEVKRDAVGEVVLN--NLYSQTQLQVSFGI-NMVALH--HGQPKIMNLK 348 + + I ++ A+ +V + + +L+ S NM K N K Sbjct: 1007 ENHTDVKVLFTITMEPKALSDVTKAPGGIVKKFKLESSLSTSNMHLFDAAGHIKKYENPK 1066 Query: 349 DIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKT 408 +I+A F R E RR L+K +D+ +L A + + +L+ + E Sbjct: 1067 EIMAEFYGIRLEYYGRRKKAMLQKLQDQIKLLSNKARFVLAVVEG-KLVVNNRKKQELLE 1125 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 L+A + + +D+ E EP Y +L +++ LT Sbjct: 1126 ELMAEGYDQIVSKTKKKPDNEDSNESEDEEPNVADVSRGY-------DYLLSMKIWSLTK 1178 Query: 469 LEHEKLLDEYKELLDQIAELLR------ILGSADRLMEVIRE 504 +KL E +E + + L L D L +++ E Sbjct: 1179 ERVDKLRAELQEREHEYSVLEGRTVQDLWLTDLDALEKMLVE 1220 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 113/527 (21%), Positives = 195/527 (37%), Gaps = 45/527 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + ++ + + + ++ R++P + DG KP R+VL+A K Sbjct: 768 VDHNASSLSYSDFVNKELILFSRYD-TERSIPQLVDGWKPGQRKVLFACIKKNM---KHE 823 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ G V YH HG++++ TIV MAQ F S ++ G FGS G A Sbjct: 824 LKVAQLAGYVSEVSAYH-HGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDA 882 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 +A RY RLA + + + +++ +G P + IP +L+NGS GI G Sbjct: 883 SAARYIFTRLAFYTRLVFHEADDPILEYEYE-EGQRIEPKMYVPVIPTVLINGSEGIGTG 941 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 ++ +P +N +VI YID E++ G RG E G Sbjct: 942 WSSFVPNYNPRDVIENLRRYIDGEEMQR-------------MTPWYRGFRGRIEENAAGT 988 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK--EKRVEGISALRDE 295 G + + + G ++ + E+P + E + E + EKR I+ RD Sbjct: 989 G------FETIGLVRRCGEDSYEITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDC 1042 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH---GQPKIMNLKDIIA 352 S + + ++V + V L +L+ S I + L + N +II Sbjct: 1043 SSHEEIHFTVKVGEERVERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEIIK 1102 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEA---LAVALANIDPIIELIRHAPTPAEA--- 406 F R E RR + L IL +A+ N + II R E Sbjct: 1103 EFAPIRLEFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINNKRKKALIEELFSQ 1162 Query: 407 -KTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQK 465 + + E + + T + +L + + Sbjct: 1163 GYDPMKEIEDAANAGIRAALKRDVIVDDEALAEGGEEEEEIVAGCTAKHYDYLLGMPMWS 1222 Query: 466 LTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 512 LT + E L E ++ ++ EL S L + + L ++ Sbjct: 1223 LTLEKVEDLRGEMRQKELELEELRH--TSVQTLWKRDLDALVAALDK 1267 >UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JAA3_9PORP Length = 899 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 161/763 (21%), Positives = 309/763 (40%), Gaps = 115/763 (15%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 ++ + ++ +LDYA VI+ RA+P + DGLKPV RR+LYAM N K A++VG Sbjct: 47 SLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQ---LFENGHLHKVAKIVG 103 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMRYTEIRLAKI 130 + +HPHGD+++ D +V++ Q + L+D QGN+G ++ GD AAA RY E +L+ + Sbjct: 104 QTM-AFHPHGDASINDALVQLGQ----KGFLIDTQGNWGNTLTGDEAAAGRYIEAKLSSL 158 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ + + ++ YDGT P +P + P LL G+ GIAVG+++ I PHN E+ Sbjct: 159 ALEVL--FDSKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIYPHNPKEL 216 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRARAEV 248 + +AY+ E + PDFPT +++ + Y G G + RA+ E Sbjct: 217 LEAAIAYLRGESFELY--------PDFPTGGLLD-----VDKYNDGHRGGALKCRAKIE- 262 Query: 249 EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVK 308 K + + E+P+ LIE I + ++ +++ I + D + I I++ Sbjct: 263 ----KIDDRVLSITELPFGKTTTSLIESILKANEKGKIK-IKHIDDMTAATA-DIRIQLP 316 Query: 309 RDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 + ++ LY+ T +V N + G P + + D++ +E++ + + Sbjct: 317 AGVSTDKTIDGLYAFTDCEVGLSPNACVIKEGTPVFLGVSDLLKYSADRTKELLVAQLNY 376 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 L + +D + + N I EA A + AM + Sbjct: 377 RLGEVQDALVTASLERIFIENR------IYKDKPFEEAACEADALDHVRKRIEAMEDLVF 430 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 +TE + +L++++ ++ EK + +L+ + Sbjct: 431 VRP------------------ITEADLKRLLEIKMARILRFNIEKHEERIAQLMRDARTI 472 Query: 489 LRILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQ 546 + L + + + + ++FG R+T I A I +I + + Sbjct: 473 EKHLAHS---TQYTIDYYTRLLKEFGAGWTRKTTI-ARFGTIEATKVIEATEKLYFDREG 528 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 G+ + +K +F+ + D ++ G ++ + Sbjct: 529 GF-------------------AGTGLKNAEFVA---ECSLLDEMIVIFRNGTY---RISK 563 Query: 607 LPEATRGARGRPI-VNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 + E RG + +N + I I+ + + G + +K+ +T +R Sbjct: 564 IEEKKFIGRGEVLYINRFRRNDNRTIYNIIY-RQGKRGPWL--------IKRCSITGISR 614 Query: 666 LRTAGKVAIKLVDGDEL--IGVDLTSGEDEVMLFSA---EGKVVRFKE--SSVRAMGCNT 718 + I +G + + + V + +V+ F++ S V G Sbjct: 615 DKDYNL--ISDEEGSRITYFSANPNGEAETVRIALKPQPRMRVLTFEKSFSEVPIRGRGA 672 Query: 719 TG-------VRGIRLGE-GDKVVSLIVPRGDGAILTATQNGYG 753 G V+ I L + G + D ++ NG G Sbjct: 673 KGNLVTRAEVQRITLKQRGASTLGGRKIWFDRDVMRINYNGQG 715 >UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bacterium Ellin514 RepID=B9XEN7_9BACT Length = 701 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 145/654 (22%), Positives = 280/654 (42%), Gaps = 94/654 (14%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 + + + S+L+YA VI RA+P++ DGLKPV RR+L++++ + + Sbjct: 52 DINKVETPLHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHE---KDDGRFI 108 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYT 123 K A + G +YHPHG++A+ D +V + + + L++GQGNFG+I GD AAA RY Sbjct: 109 KVATISGHCA-QYHPHGEAAIGDALVVI----TNKRYLIEGQGNFGNIYTGDPAAAPRYI 163 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 E RL ++A + E +FV +YDG K P +P+K+P LL+ G+ GIAVGM+ I Sbjct: 164 ECRLTELARNEL--FNDELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKIL 221 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHN E++ +A + + + PDFPT +++ R Y G+G + +R Sbjct: 222 PHNFPELLEAQIAILKKQPFKVL--------PDFPTGGLMDARE-----YADGKGSIKVR 268 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 A+ + T+++ EIP LI I + ++ +++ I ++ D + ++ I Sbjct: 269 AKIK-----AKDESTVVIKEIPPMTTTDSLIGSIEDASRKGKIK-IKSINDFTSEEA-EI 321 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 I+ + +++ LY+ T ++S ++ + + +P M + +++ + + Sbjct: 322 EIKAPSGVSADQLIDALYAFTDCEMSISSRIIVIRNNRPVEMTVSEVLRENTAQLVDTLK 381 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 R + +K ++ H + + + N I + I T A+ Sbjct: 382 RELELKEKKLQEELHFKTLVRIFIEN--RIYKKIEQCKTNEAVYEAVYDGFKPF------ 433 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 ++ + L + + +L +R+++++ + K +E ++ Sbjct: 434 -------------------RKEMIRDLVDTDVEMLLGVRIRRISLFDINKHREEIDKIKA 474 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVV 541 ++E + L + L + LE + E++G R T+ ++ ++ +D+ + V Sbjct: 475 DLSETAKHLKN---LTKYAIGRLEALLEKYGPIYPRLTK-SSRYDEVEAKDVAFKAFKVA 530 Query: 542 TLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYS 601 GYV G S + + D +L G Sbjct: 531 YDRESGYV--------------GHKVSGEEFRVD--------CTKFDKLLLIFRDGHY-- 566 Query: 602 MKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 655 KV +L E P V + +RI + E + T G + Sbjct: 567 -KVTELQEKLFVG---PDVVYCGIPDRDRIFTLAYTNR--EATYLKRFTFGGII 614 >UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1N9_9BACT Length = 745 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 153/737 (20%), Positives = 299/737 (40%), Gaps = 118/737 (16%) Query: 9 TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 68 + ++ +L+YA VI+ RA+P + DGLKPV RRVL+ + + + + K A Sbjct: 68 EQAPLAVSYRNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDM---DDGRFHKVAN 124 Query: 69 VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMRYTEIRL 127 VVG + K HPHGD+++ +V + Q R L++ QGN+G ++ GD+AAA RY E RL Sbjct: 125 VVGATM-KLHPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARL 179 Query: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 A +++ +T + +YDG K P +P K P +L+ G+ GIAVG++T I PHN Sbjct: 180 TPFARDVL--FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNF 237 Query: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GKVYIRAR 245 ++ + ++ + I PDFPT G Y G GKV +RAR Sbjct: 238 NDLCRAAINHLQGKTFRIL--------PDFPTGG-----TGDFTDYNDGERGGKVKVRAR 284 Query: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 E + + + + E+PY V LIE I + +++ I + D++ + I++ Sbjct: 285 IE-----EHSKSVLCITELPYGVTTESLIESILAANAKGKIK-IKHV-DDNTASKVEILV 337 Query: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH------HGQPKIMNLKDIIAAFVRHRR 359 + + + V+ LY T QV + +P+ M ++DI+ A V + Sbjct: 338 HLPPGSQPDKVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGVRDILKASVDATK 397 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 E++ + +L + + H + + + I I + T + Sbjct: 398 ELLKQELEIKLGELEQQWHWDSLERIFIE--ERIYRRIEKSQTWESVLEEIRTGLKPFIG 455 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 +TE+ + ++R+++++ + + K Sbjct: 456 NLRR-------------------------EVTEEDIVRLTEIRIKRISAYNRFQADEALK 490 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQE 537 ++ + I E L + L+ + E ++E++G KRRT A I+ +++ Sbjct: 491 KIEEAIKETKHHLKN---LVAYAVDWFERLQEKYGKGVKRRTT-YDEIAQIDASAVVSAN 546 Query: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597 + G++ ++ +F+ + D +L G Sbjct: 547 QRLYVNREDGFI-------------------GLNWRQHEFVT---ECSILDSVLTIMRDG 584 Query: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657 S+KV ++ + R + L P + D ++ T KK Sbjct: 585 ---SLKVTKVADKVFMGRKIIHIGLWPKDGDMNFYTMVYQDGE---------TGKAFAKK 632 Query: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEV---MLFSAEGKV------VRFKE 708 + +R + ++ + ++I + ++ E + + S +G+ + F Sbjct: 633 FQIGGLSRDK---LYSLVKSEDSKIIFLHISPSEQAMPKTLHVSVDGRSGARVRELDFDL 689 Query: 709 SSVRAMGCNTTGVRGIR 725 +++ + G+ + Sbjct: 690 TALPVSTRTSKGLTITK 706 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 109/524 (20%), Positives = 213/524 (40%), Gaps = 46/524 (8%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 ++ + ++ + ++++ S R++P + DGLKP R++L+A K Sbjct: 643 ENVDHSQKHLTYKDFVNKELINFSNSDN-ARSIPSLCDGLKPGQRKILFACFKRNL---K 698 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++ G V YH HG+ ++ TIV MAQ F + + G FGS G Sbjct: 699 NEIKVAQLSGYVAEHSAYH-HGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNMGGK 757 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 AA+ RY L KI + + + + ++++ +G + P IP L+NG+ GI Sbjct: 758 EAASARYIHTCLNKITRCVFPEPDDHILYYLED-EGQQVEPIYYLPIIPTALLNGADGIG 816 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +T+IP +N E+++ SIE M +P D G G E Sbjct: 817 TGWSTSIPCYNPRELVD-----------SIEKRMMGVPFTDL--LPWYKGFTG--EISNN 861 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK--EKRVEGISALR 293 + ++ + + + TI + E+P + + E ++ + + I ++ Sbjct: 862 EKSQITVSGKYHL-----VNETTIEITELPIKKWIRDYKNFLEEKLESTKDKDPEIEDIK 916 Query: 294 DESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALHH--GQPKIMNLKDI 350 + + + V+++ + +V + +LQ + NMV +H + N+ +I Sbjct: 917 EYHAGNRVHFVVKMSEKQMEKVQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICEI 976 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVA-LANIDPIIELIRHAPTPAEAKTA 409 + F R RR + + K IL LA I+ I +R+A K Sbjct: 977 MEEFYEVRLNAYKRRKEYLVSKIERDLEILSNKKRFILAVINESIR-VRNAKRKDLIKEL 1035 Query: 410 LVANPWQLGNVAAMLERAGDDAARPEWLEP--EFGVRDGLYYLTEQQAQAILDLRLQKLT 467 V Q+ ++ + E + E + ++ +L L + LT Sbjct: 1036 SVQGYVQMKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLPMWSLT 1095 Query: 468 GLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVRE 511 + E++ E K D++ +L+ ++++ +E+L+ E Sbjct: 1096 YEKVEEIKQEQKNKQDELDKLVA-----TEVIDIWKEDLKNFIE 1134 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 105/548 (19%), Positives = 204/548 (37%), Gaps = 43/548 (7%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + I++ + + ++M+ + R++P V DGLKP R+V+Y Sbjct: 716 MDYTQPQIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVH---E 771 Query: 64 KKSARVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K +R+ G V YH HG+ ++ TIV +AQ F S L+ G FG+ G +A Sbjct: 772 TKVSRLAGYVASETAYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNA 830 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 +A RY L+ +A L + + +++ N +G P+ +P +LVNG+ GI G Sbjct: 831 SASRYLNTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTG 889 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T IP +N ++ ++ E + I G RG R Sbjct: 890 WSTFIPNYNPKDITANLRHMLNGEPLEI-------------MTPWYRGFRGSITKVAPDR 936 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKI-AELVKEKRV-EGISALRDE 295 K+ + + G + + E+P + + E + A LV +++ + I Sbjct: 937 YKIS-------GIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESH 989 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQL-QVSFGINMVALH--HGQPKIMNLKDIIA 352 + + + + + E + +L + +L + NM+A K +++DI+ Sbjct: 990 HGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILT 1049 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 F R RR + + R A + I EL+ + L Sbjct: 1050 EFYEVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEG-ELVVSKKKKKDLIVELKE 1108 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHE 472 +Q + + E + G +L + L LT + Sbjct: 1109 KKFQPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDA--YNYLLSMPLWSLTYERYV 1166 Query: 473 KLLDEYKELLDQIAELLRILGSADRLMEVIREELELV-REQFGDKRRTEITANSADINLE 531 +LL + E++ ++ L I + L + E + D +R + + + Sbjct: 1167 ELLKKKDEVMAELDAL--IKKTPKELWLHDLDAFEHAWNKVMDDIQREMLEEEQSSRDFV 1224 Query: 532 DLITQEDV 539 + ++ Sbjct: 1225 NRTKKKPR 1232 >UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bacteria RepID=C6XSV0_PEDHD Length = 977 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 158/761 (20%), Positives = 310/761 (40%), Gaps = 109/761 (14%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + I ++ +LDYA VI+ RA+P + DGLKPV RR+++++ + + + K+A V+ Sbjct: 18 IPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEM---DDGRFNKAANVI 74 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAK 129 G+ + KYHPHGD+++ D +V++ Q + +L+D QGN+G I GD+AAA RY E RL+K Sbjct: 75 GNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDNAAAPRYIEARLSK 129 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 A+E++ +T + +YDG P +P K P LL G+ GIAVG+AT + PHN E Sbjct: 130 FANEVV--FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIE 187 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 +++ + + +I PDF T + E R GR + +RA+ Sbjct: 188 LLDASIEALQGHRPNIL--------PDFFTGG-MADFSAYNEGMRGGR--IRVRAKI--- 233 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 + ++T+++ EIPY +I+ I L + + +++ + IVI++ Sbjct: 234 --TEKDKKTLVITEIPYSTTTGSVIDSI--LSANDKGKIKIKKIEDNTAAHVEIVIQLAP 289 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 +V ++ LY+ T +VS N + +P+ +++ DI+ H + ++ + + Sbjct: 290 GISPDVTIDALYAFTSCEVSISPNTCIIKDEKPQFLSVNDILIENSMHTKALLKKELEIK 349 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 L + +++ L + + + + N Sbjct: 350 LHELQEKIFFSSLLKIFI--------------------QEGMYKNAEYENSVNFEMVVEV 389 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 E +P + ++D + +T + +K ++ K L D+I + Sbjct: 390 LNRLFEPFKPGLYREILPEDF-----KKLIDKPMSSITRFDVKKADEQMKALSDEIKVVK 444 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 L L E + +++++G R +I L D + V + Y+ Sbjct: 445 NHL---RHLTEYAIAWFQKLKDKYGKGR-----ERKTEIRLFDRVEASKVALANVKL-YM 495 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 + G +++++F+ + D ++ F G+ KV Sbjct: 496 NRED------------GFIGTGLRKDEFVAD---CSDIDELIVFREDGKCIITKVAD--- 537 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA 669 T +G + + I ++ A+ +K+ + R Sbjct: 538 KTFVGKGILHAQVFKKGDERTIYNMIYKDG---------ASGVSYIKRFAV--VGVTRDK 586 Query: 670 GKVAIKLVDGDELIGVDLTSGEDEVMLFS------AEGKVVRFKES--SVRAMGCNTTG- 720 K G +++ + E + + ++ K ++F + G + G Sbjct: 587 EYDLTKGSKGSKVLYFT-ANPNGEAEIVTVQLKPHSKLKKLQFDLDFAEIAIKGRGSQGN 645 Query: 721 ------VRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGK 754 V+ I L +G +S + D + +G GK Sbjct: 646 IVSKYPVKKILLKSKGVSTLSGLKIWYDDLLRRLNVDGRGK 686 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 101/527 (19%), Positives = 200/527 (37%), Gaps = 44/527 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + I+ + + ++M+ + R++P V DGLKP R+V+Y M K Sbjct: 714 IDHSQPVIEIKNFINQELILFSMADNI-RSIPSVVDGLKPGQRKVIYGMFKKNL---KNE 769 Query: 64 KKSARVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K ++ G + YH HG++++ TI+ +A F S L+ +G FGS G A Sbjct: 770 AKVEQLAGYISEQTAYH-HGETSLQQTIIGLAHNFVGSNNINLLLPKGQFGSRIEGGKDA 828 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A RY +++A L + ++++ N +G PD +P LLVNG+ GI G Sbjct: 829 AQPRYIFTMPSRMARLLFDKRDDPILNYL-NDEGLWVEPDYYVPIVPMLLVNGAEGIGTG 887 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T IP N ++++ I +E P P G +G + R Sbjct: 888 WSTFIPNFNPSDLVKNIRHLIKNE-------------PLEPMHPWYRGFKGTIQQMTPDR 934 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV-KEKRVEGISALRDES 296 KV + + +T+ + E+P ++ + E + L+ +K+ I + Sbjct: 935 YKVS-------GIIEQVSDDTVDITELPVRLWTQDMKEYLESLMAADKQGSFIKDYTEYH 987 Query: 297 DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDIIAA 353 ++ + +++ ++ + + L ++ ++ + NMVA K + DI+ Sbjct: 988 TEENVHFRVKLTKEGMATALAEGLENKFKVARTLATSNMVAFDPQGRIRKYDSAYDILKE 1047 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVAN 413 F R RR + + A + I L+ + L Sbjct: 1048 FYEVRLRYYQRRKEHLVNDLETVYTKISNQARFIHMIIEG-TLVVAKKKRSVLVQELREK 1106 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ-QAQAILDLRLQKLTGLEHE 472 ++ A A + E +L++ + LT + Sbjct: 1107 GFKAIPKPKKGRLAEIAAQETAANRDADDDAEEEDASPEADDFTYLLNMPVYSLTYERYM 1166 Query: 473 KLLDEYKELLDQIAELLRI------LGSADRLMEVIREELELVREQF 513 LL + E +++ +L++I L + + +EL+ + Sbjct: 1167 NLLKKKGECEEELDKLMKITPKDIWLTDLEGFEKEWEKELDEDAKTR 1213 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 106/538 (19%), Positives = 210/538 (39%), Gaps = 46/538 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + ++ + + + ++ + R++P + DGLKP R++L++ K Sbjct: 687 IDHSKKEISYTDFIDKELILFSKAD-CKRSIPSIVDGLKPGQRKILFSCFKRNL---KKE 742 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ G V YH HG+ ++ T+V MAQ F S L+ G FG+ G + Sbjct: 743 IKVAQLAGYVSEQSAYH-HGEDSLNGTVVNMAQNFVGSNNINLLYPGGMFGTRLQGGKDS 801 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY +L++I + + ++++D+ DG P +P +LVNGS GI Sbjct: 802 ASPRYIFTKLSEITRYIFPKADDPVLEYLDD-DGQSIEPRFYVPILPMVLVNGSEGIGTA 860 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TNI +N +++ G A I E+ G GI E + Sbjct: 861 WSTNIETYNPVDIVEGLKALIKGEEAKEFH-------------PWYKGFDGIIERLAPTK 907 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 + + +E K T+ + E+P ++ E++ ++++ + + R+ Sbjct: 908 ----WQTKGVIE---KIDDNTLDISELPIRIWTESFKERLEKMMEA---QQVDDFRENHT 957 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH---HGQPKIMNLKDIIAAF 354 + +++ + + LY +L F + + L G + + DI+ F Sbjct: 958 DVTVSFTVKMTDKQMKDAEDAGLYDYFKLFKKFSTSNMVLFSEEGGIKEYETVLDILKEF 1017 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVA-LANIDPIIELIRHAPTPAEAKTALVAN 413 R + +R + L K + IL + I+ I++ + A+ L Sbjct: 1018 YPIRLKFYGKRKEYMLEKMKKELEILSNKVRFIMEVINETIQVKKRKK--ADLLKELKTK 1075 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 + + AGD E E + + LT+ +L + L LT + +K Sbjct: 1076 KYSSFPKEKKIAAAGDIQNEEEEEEEDEEK--DVADLTDG-YNYLLSMPLWSLTVEKVKK 1132 Query: 474 LLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE 531 L E +E + ++ +L + + +E + + K + E I E Sbjct: 1133 LEKEKEEKVKEVEQLEN--TKPETMWLSELDEFLEKLDSYEQKEQKEFDFYLKKIEKE 1188 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 101/521 (19%), Positives = 196/521 (37%), Gaps = 43/521 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + V + + + ++M+ + R++P + DGLKP R++L+ + Sbjct: 675 LDQRQPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFVAFK---KIARKE 730 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++VG V YH HG+ ++ I+ MAQ + S L+ G FG+ G + Sbjct: 731 MKVAQLVGYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDS 789 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY +L+ + L + +D N DG P IP +LVNG+ GI G Sbjct: 790 ASARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTG 848 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T IP +N E++ ++ E P G +G E + Sbjct: 849 WSTFIPNYNPREIVANVRRLLNGES-------------MVPMDPWYRGFKGTIEKTASKE 895 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 G E TI + E+P + + L + ++ +D Sbjct: 896 GGCTYTITGLYEE---VDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYND 952 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAF 354 + + + + + + + +L + + + L + K + + I+ F Sbjct: 953 EKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEF 1012 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 R E +R ++ LE A + + E+I + A+ L Sbjct: 1013 FDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSG-EIIVNKRKKADIVEDLRQKG 1071 Query: 415 W-----QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL 469 + + +V A + A DD A E E Y+ + +L + + LT Sbjct: 1072 FTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIE 1131 Query: 470 EHEKLLDEYKELLDQIAELLR------ILGSADRLMEVIRE 504 + E+LL + +++ +A++ + L + L + + + Sbjct: 1132 KVEELLADRDKMIIAVADMKKTTPKSLWLSDLESLDKELEK 1172 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 126/625 (20%), Positives = 226/625 (36%), Gaps = 48/625 (7%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 S L V ++ + + ++ + R+LP V DGLK R+VL+A Sbjct: 657 SYLDTSSGSVTYQDFVNRELIQFSHADN-QRSLPSVVDGLKISQRKVLFACMKRKLTS-- 713 Query: 62 AYKKSARVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++ G YH HG+++++ TIV MAQ F S L+ G FG+ G Sbjct: 714 -EVKVAQLAGYCSEHTAYH-HGEASLHSTIVNMAQDFVGSKNLPLLFPSGQFGTRLQGGK 771 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 AA+ RY L K + + + + + D+ DG P IP LLVNG+ GI Sbjct: 772 DAASPRYIFTLLQKHTRLVFPEEDDALLRYADD-DGFPVEPVFYVPIIPMLLVNGAEGIG 830 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +++IP H+ VI+ L +D E+ + + + G G + +T Sbjct: 831 TGWSSSIPCHHPVLVIDNLLKLLDAEEAGDDLSIVELSL----MTPWAKGFSG--DIRQT 884 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 G+ R E + T+ V E+P + + +LV +K I + + Sbjct: 885 GKHSFVSRGNVE-----QVNTSTVRVTELPVGKWVEDYKKFLWDLVGKK---AIRSFSEH 936 Query: 296 SDKDGMRIVIEVKRDAVGEVVL-----------NNLYSQTQLQVSFGI-NMVALH-HGQP 342 + +R I + R + + L +L+ NM A + GQ Sbjct: 937 HSERDVRFDISMTRSDLAKYAEDAAENCDAGDSEALVKLLRLEAPLSTSNMHAFNADGQL 996 Query: 343 -KIMNLKDIIAAFVRHRREVVTRRTIF-ELRKARDRAHILEALAVALANIDPIIELIRHA 400 K +D++ F RR++ ++R E R+ ++ + + ++ I Sbjct: 997 VKYETSEDVLRDFYGVRRKLYSKRKRHLEQRQTKEVLRLSNRIRFIQEVSTGSLQKILRE 1056 Query: 401 PTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILD 460 P L+ A E + G +E +L+ Sbjct: 1057 RIPKAELIDLLKEHGFAPASAFKEEAIDHMGDLGLAAVGREQGKAGDLDGSE-DYDYLLN 1115 Query: 461 LRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTE 520 L T ++L E+ D++ +L + +L E L V F ++ Sbjct: 1116 TSLMSFTKEFADRLRKEHDTKQDKLQQLQA--TTPAQLWRNELERLRAVLSHFLNENSAT 1173 Query: 521 ITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDR 580 + ++D + VV + K E + G S + +D Sbjct: 1174 LKRPASD-AFGAMAKHGAEVVIVPRN--FKLLEELENSEKGHGDMSISYGLEQADDIFLT 1230 Query: 581 LLVANTHDHILCFSSRGRVYSMKVY 605 + GR+YS++++ Sbjct: 1231 NWIGTILGPAGTC-HDGRIYSLRIH 1254 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 101/521 (19%), Positives = 196/521 (37%), Gaps = 43/521 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + V + + + ++M+ + R++P + DGLKP R++L+ + Sbjct: 675 LDQRQPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFVAFK---KIARKE 730 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++VG V YH HG+ ++ I+ MAQ + S L+ G FG+ G + Sbjct: 731 MKVAQLVGYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDS 789 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY +L+ + L + +D N DG P IP +LVNG+ GI G Sbjct: 790 ASARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTG 848 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T IP +N E++ ++ E P G +G E + Sbjct: 849 WSTFIPNYNPREIVANVRRLLNGES-------------MVPMDPWYRGFKGTIEKTASKE 895 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 G E TI + E+P + + L + ++ +D Sbjct: 896 GGCTYTITGLYEE---VDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYND 952 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAF 354 + + + + + + + +L + + + L + K + + I+ F Sbjct: 953 EKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEF 1012 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 R E +R ++ LE A + + E+I + A+ L Sbjct: 1013 FDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSG-EIIVNKRKKADIVEDLRQKG 1071 Query: 415 W-----QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL 469 + + +V A + A DD A E E Y+ + +L + + LT Sbjct: 1072 FTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIE 1131 Query: 470 EHEKLLDEYKELLDQIAELLR------ILGSADRLMEVIRE 504 + E+LL + +++ +A++ + L + L + + + Sbjct: 1132 KVEELLADRDKMIIAVADMKKTTPKSLWLSDLESLDKELEK 1172 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 105/604 (17%), Positives = 208/604 (34%), Gaps = 82/604 (13%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + + E + + ++M+ V R++P + DGLKP R+V++ K Sbjct: 750 LDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKL---KKE 805 Query: 64 KKSARVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++VG + YH HG++++ TI+ +AQ + S L+ G +G+ G Sbjct: 806 IKVAQLVGYISEHAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDH 864 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RY I + + ++++ + D P+ +P +L+NG+ GI G Sbjct: 865 AAPRYIFTNAKSITRAIYHPFDDPLLNYLKD-DDVPIEPEWYMPTVPMVLINGAEGIGTG 923 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TNIPP+N +++ + +E+ P G +G E TG+ Sbjct: 924 WSTNIPPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKG--EVRPTGK 968 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKE-------------- 283 GK + A K T+ + E+P +++ ++ Sbjct: 969 GKYDVVGVA-----TKINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDED 1023 Query: 284 ------KRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFG-INMVA 336 K + ++ D + + + + + L L NM+ Sbjct: 1024 GKKDVVKNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVSTTNMIL 1083 Query: 337 LH--HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPII 394 K ++I+ F R +R ++ + L + I Sbjct: 1084 FDFEGKIKKYETPEEILKDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIEMIIKK- 1142 Query: 395 ELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQ 454 EL+ A+ L ++ A + A D E + E Sbjct: 1143 ELVVSNRKKADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAV----TD 1198 Query: 455 AQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFG 514 +L + + LT EKL + E ++ L + S L Sbjct: 1199 FDYLLGMAIYSLTRERIEKLKQQAHEKEQEL--LALLEKSPTDLWN-------------- 1242 Query: 515 DKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE 574 T++ + + +I ++ + G K + + ++ G G+ + Sbjct: 1243 ----TDLDKFLEEWEKDCMIFEQKKGEGGAVNG--KKRKQRTLKTRKSIGMGRRGKDSDD 1296 Query: 575 EDFI 578 +DF+ Sbjct: 1297 DDFV 1300 >UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRS7_9BACT Length = 808 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 161/751 (21%), Positives = 309/751 (41%), Gaps = 122/751 (16%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 + + +++DYA VI RA+PDV DGLKPV RR+L+ + + + K A +VG Sbjct: 33 LNRMMTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTLFK---ADDGKFHKVANIVGA 89 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + YHPHGDS++Y +V +A + ++ QGNFG+I GD+A+A RY E RL+ +A Sbjct: 90 CM-AYHPHGDSSIYGALVTVA----NKEYFIEKQGNFGNILTGDNASAARYIECRLSPLA 144 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 E + ET +FVD+YDG K P +P K+P LL+ G+ GIAVGMAT I PHN E++ Sbjct: 145 RETL--FNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELL 202 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 + + + I PDF I++ Y GRGKV +RA+ ++ Sbjct: 203 KAQIKILRGQRFEIY--------PDFLCGGIMD-----ISQYDFGRGKVTVRAKIDI--- 246 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 +T+++ ++ L+ I E K +++ I++++D + + I I + R Sbjct: 247 --LNNKTLVIKQVAPGTTTESLMSSIEEAAKNGKIK-IASIQDY-TAEHVEIEINLPRGV 302 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 + LN LY+ TQ +VS N+ + G+PK +++ +++ + ++ + E Sbjct: 303 QADWALNALYAFTQCEVSLSPNITVIQRGRPKEIHVGEVLHHNTQTLVNILRWELLNEQN 362 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 K ++ H + + + I + I + +E A+ + + Sbjct: 363 KLNEKYHDRTLERIFIE--ERIYKKIEECTSQSEVFEAVRSGLKPFLDQLRR-------- 412 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 ++++ + +L + +++++ + K E +E+L + E+ Sbjct: 413 -----------------DVSDEDIERLLRIPIRRISLFDINKNNKELEEILKALKEVAYN 455 Query: 492 LGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQGYV 549 L + L + ++ + ++G R TEI + + + +++ V GY Sbjct: 456 L---EHLKDYTINFIKNLISKYGKQYPRLTEIKS-------IEKVDAKEIAVANVKLGYD 505 Query: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609 K G +I + D I+ + G+ KV + + Sbjct: 506 K-------------VGGYIGTQINNG----NHIKCTEFDRIIILTKDGK---FKVTNISD 545 Query: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA 669 R I + E+I +++ + + K+ ++ +F + Sbjct: 546 KLFVGRFTEIF----VVDKEQIYSVIYTDKK---------SGISYHKRCMIKKFILDKEY 592 Query: 670 GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG 729 G ++ + G V+ + GV + + Sbjct: 593 LL---------------FPKGNKLELIDTNYGIVLDCHLED---TSR-SKGVTAELIFDD 633 Query: 730 DKVVSLIVPRGDGAILTATQNGYGKRTAVAE 760 + S A T+ KR + ++ Sbjct: 634 VPIRSATAKGFKTASRPITKFLKKKRGSESK 664 >UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2480 Length = 417 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 150/417 (35%), Positives = 254/417 (60%), Gaps = 3/417 (0%) Query: 435 EWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGS 494 + E + L+E QA+AIL ++L++LTGLE E + +E +ELL I +L IL Sbjct: 1 KTQEEAEKSLIARFGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILAD 60 Query: 495 ADRLMEVIREELELVREQFGDKRRTE-ITANSADINLEDLITQEDVVVTLSHQGYVKYQP 553 ++ +I+ EL ++E++GD+RR++ I + E+LI +ED VV L+ + Y+K Sbjct: 61 EQEILNIIKNELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVLLTSENYIKRTL 120 Query: 554 LSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 613 S+Y Q RGGKGK KE D I+ ++ A THD +L F++RGRV+ +K Y++P A+ Sbjct: 121 ASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQ 180 Query: 614 ARGRPIVNLLPLEQDERITAILPV-TEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 672 A+G VNLL L+ +E+ITAI+ + ++ +FMAT GT+KKT + ++ +RT G + Sbjct: 181 AKGVAAVNLLQLQPEEKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLI 240 Query: 673 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKV 732 AIKL DGDEL + +SG D++++ ++ G+ +RF E R+MG GVRG+RL D V Sbjct: 241 AIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRGVRLRPNDSV 300 Query: 733 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDC 792 V + + D +L ++NGYGK T ++ +P+ R G+ + VT + G ++ + Sbjct: 301 VGMDIANDDRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIISVKTIQQD 360 Query: 793 D-QIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDL 848 D + ++++ G +R + +I ++GR TQGV +++T++D++V + ++E E+ Sbjct: 361 DIEALLVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMSERSSNEES 417 >UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Treponema RepID=Q73KU9_TREDE Length = 703 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 157/730 (21%), Positives = 303/730 (41%), Gaps = 128/730 (17%) Query: 13 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 72 IE ++L+YA VI RA+PD+ DGLKPV RR+L+++ + + + K A V+G Sbjct: 4 IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEM---DDGKFHKVANVIGH 60 Query: 73 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIA 131 + KYHPHGD+++ + +V +A + + +D QGNFG+I GD A+A RY E R+ + A Sbjct: 61 CM-KYHPHGDASIGNALVVLA----SKELFIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115 Query: 132 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191 + D+ +YDG K P K+P +L G+ GIAVGM+T I PHN+ E+I Sbjct: 116 KTIF--YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173 Query: 192 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 251 A++ + ++ PDFPT +I+ Y G GKV +RA+ + Sbjct: 174 EAEKAFLSGKSFAL--------FPDFPTGGLID-----VSEYEDGLGKVLVRAKLDT--- 217 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDA 311 + + I++ E+P+ +I I K +V+ IS + D + ++ + I +++ R Sbjct: 218 --SDEKRIVIRELPFGSTTESMINSIEAASKAGKVK-ISEISDYTGEN-VEIELKLPRGV 273 Query: 312 VGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371 V++ LY+ T+ + S N++ + P + + DII + +++ +E Sbjct: 274 YSADVVDALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYERA 333 Query: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 +R H+ + + + I + I T A++ Sbjct: 334 MLTERLHLRTLERIFIE--ERIYKKIETMKTAEGVINAVIKGFVPFK------------- 378 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491 ++ + +TE +L + +++++ + K +E +E+ +++ E+ ++ Sbjct: 379 ------------KELIRDVTEDDVDKLLKIPIRRISLYDINKNREEVREINNRLKEIAKL 426 Query: 492 LGSADRLMEVIREELELVREQFGDK---RRTEITANSADINLEDLITQEDVVVTLSHQGY 548 L + L L+ + + + R+TEIT +++++ +T++ + GY Sbjct: 427 LKN---LKGYAISVLDGIAAKLPAEEFKRKTEITGF-TKVDVKEAVTRDTALRYDEETGY 482 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 + G S K+ +L + +D I G VY+ V +P Sbjct: 483 L----------------GTSVTTGKD------ILRVSPYDRIFVLRKSG-VYT--VMDVP 517 Query: 609 EATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT 668 + G + E ++ +L + + T +K+ + + R Sbjct: 518 DRVFVDTGMW---YCGFAEKEELSKVLFTVIYRDSK-----TKYAYIKRARVEGYILNRD 569 Query: 669 AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVR---------------FKESSVRA 713 + + + + + + FK S Sbjct: 570 ---------------YLFAPDNTEVLFVSTKLKFSFKLNYAPKPRVKKIEEEFKADSFAE 614 Query: 714 MGCNTTGVRG 723 G GVR Sbjct: 615 KGLKAQGVRL 624 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 107/536 (19%), Positives = 208/536 (38%), Gaps = 55/536 (10%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + + I + + + ++++ + R++P+V DG KP R+VLY K+ Sbjct: 663 LDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSE 718 Query: 64 KKSARVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ V YH HG+ ++ TI+ +AQ F S L+ G FG+ G A Sbjct: 719 LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDA 777 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RY L K+ ++ + ++ D P+ +P +LVNG+ GI G Sbjct: 778 AAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTG 836 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T IPP N E+I ++DE++ G G E R Sbjct: 837 WSTYIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLR 883 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV--KEKRVEGISALRDE 295 ++Y R + G + + E+P + + + E + + +K I + ++ Sbjct: 884 YRMYGR-------IEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQ 936 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFG-INMVALH--HGQPKIMNLKDIIA 352 D + ++ +I + + + + Y + +L +NMVA K ++ +I++ Sbjct: 937 HDDN-IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILS 995 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP------------IIELIRHA 400 F R E +R + + + I II+ + + Sbjct: 996 EFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENL 1055 Query: 401 PTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ---QAQA 457 P K +A + + E E + + E+ + Sbjct: 1056 GFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEY 1115 Query: 458 ILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 513 +L +R+ LT ++KLL + +E ++ LL++ SA + + E+ ++F Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL--SAKDIWNTDLKAFEVGYQEF 1169 >UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia RepID=PARC_BORBU Length = 626 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 160/718 (22%), Positives = 303/718 (42%), Gaps = 108/718 (15%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++I LK ++L Y+ VI RA+ V DG KPV RR+++++ + + + K A VV Sbjct: 1 MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAK 129 G+ + KYHPHGD+++Y+ +V +A + + ++ QGNFG++ GD A+A RY E RL Sbjct: 58 GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 +A +++ KE + +YDG P + P KIP +L+ GS GIAVGMA I PHN E Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 ++N + + E I PDFPT I++ Y G GKV +RA+ E Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIET- 216 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 +TI++ E+P+ LI I + +++ ++ +S++ D + ++ + I + + R Sbjct: 217 ----IDEKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAEN-VAIELSLPR 270 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 V+ LY T Q+S +N++ L P + +KD+I H ++++ + Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELELQ 330 Query: 370 LRKARDRAHILEALAVALA-NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 K ++ + + I ++E I + V + + + Sbjct: 331 KSKILEKIFYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLK---- 386 Query: 429 DDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAEL 488 + + +L + ++K++ + +K + K L EL Sbjct: 387 ------------------------EDVENLLKIPIRKISLFDIDKNSKDIKILNK---EL 419 Query: 489 LRILGSADRLMEVIREELELVREQFGDK--RRTEITANSADINLEDLITQEDVVVTLSHQ 546 I + + ++L+ ++ + R+T+I+ + E V + L+ Sbjct: 420 KSINSNISSIRGYSINFIDLLLAKYSKEHQRKTKISLIKSKNVKEIATKNMKVYLNLAE- 478 Query: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606 G + + + +FI A+ +D IL F R Y +K Sbjct: 479 -------------------GFAGTSLFDGEFIGN---ASYYDKILVF--RENSYVLK--N 512 Query: 607 LPEATRGARGRPIVNLLPLEQD-ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 665 + + T + + + E+I +I+ + VK+ + +F Sbjct: 513 IEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFYY---------VKRFKIDKFIT 563 Query: 666 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRG 723 + L + DE + L + V + + V R + + ++ G R Sbjct: 564 DKVYEF----LGENDEFVDFSL--NPEFVEFSTNKDIVKRIEIDNFMVKSRSSIGKRI 615 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 101/570 (17%), Positives = 199/570 (34%), Gaps = 106/570 (18%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + T ++I + + + ++M+ + R++P + DGLKP R+V+++ ++ Sbjct: 636 LDQSQTQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVIFSCFKRNL---RSE 691 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++VG V YH HG+ ++ TIV +AQ F S L+ G FGS G A Sbjct: 692 IKVAQLVGYVSEQSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQGGKDA 750 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY L+ + + + + ++++ N D P+ IP +LVNG+ GI G Sbjct: 751 ASPRYIFTSLSPLTRMIFNENDDAILNYL-NDDNFSIEPEFYVPIIPMVLVNGAEGIGTG 809 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T+IP N +V+ I ED RG E + G Sbjct: 810 WSTSIPNFNPVDVVENIRRMIRGEDPVE-------------MVPYYRNFRGTIE--KIGE 854 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 GK + E G + + E+P E + LV+ ++ Sbjct: 855 GKFQVSGIYE-------GDMDLEITELPVGTWTLNYKEFLESLVQAGVAR---DFKEYHT 904 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHHG--QPKIMNLKDIIAAF 354 + + +++ + +L + + NMV K ++I+ F Sbjct: 905 EKTVSFTVKLSKPVS----------NLKLNSTITVNNMVCFDENLRIKKYATPQEILKEF 954 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANI---DPIIELIRHAPTPAEAKTALV 411 R R L+ R+ LE + + + +I R + ++ Sbjct: 955 YGVRLRYYLIRKENMLKVMREELEKLENKVRFIKEVSMGELVISRRRKGEVIFDLESRGY 1014 Query: 412 ANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEH 471 A + +L + + LT Sbjct: 1015 AR--------------------------------------ADDYEYLLSMSILSLTVERI 1036 Query: 472 EKLLDEYKELLDQIA----------ELLRILGSADRLMEVIREELELVREQF-----GDK 516 E+L +E+ + L + L + + + E ++ Sbjct: 1037 ERLSNEHAKRLSEYNQLMGKTPKELWLEDLEVFEKEYLRIAENEAREYDDELNGCIKKKG 1096 Query: 517 RRTEITANSADINLEDLITQEDVVVTLSHQ 546 +R + + +D + +T++ + ++ Sbjct: 1097 KRPKSRSGISDRQKKAKVTRKPRSLPVTEH 1126 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 111/512 (21%), Positives = 203/512 (39%), Gaps = 46/512 (8%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 V+ E+ + + ++ + + R++P DGLKP R+VLYA K+ K A++ Sbjct: 687 NVSYEDFINKEMIHFSNADNI-RSIPSAIDGLKPSQRKVLYACFKRKL---KSEIKVAQL 742 Query: 70 VGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYT 123 G YH HG++++ TI+ MAQ F S L+ G FG+ G AA+ RY Sbjct: 743 TGYCAEHTAYH-HGEASLQSTIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYI 801 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 LA IA L + + + ++++ DG + P+ IP L+VNG GI G +T IP Sbjct: 802 YTYLAPIARSLFPEADDTLLSYLED-DGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIP 860 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PH+ +V+ LA +D E L + P G +G E G G V Sbjct: 861 PHSANDVLEYILAKLDGA----ERLPKIHP--------FARGFQGRIEPDPNGNGYV--- 905 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + TI++ E+P + + + ++ +++ + + + Sbjct: 906 ---SFGRSSCISDRTILIDELPLRCWTNKYKGILLKMRDRGE---VTSFVENHNTSKVSF 959 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALH-HGQP-KIMNLKDIIAAFVRHRRE 360 ++ +K + + L +L+ + NM A + GQ K + I+ AF R + Sbjct: 960 LVTLKSAQLARMTQAGLEKSFKLKTNLQTTNMHAFNKDGQICKFDTAESIVEAFFPVRMQ 1019 Query: 361 VVTRRTIFELRKARDRAHILE---ALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 + R A IL A+ + D I+L + E L + + Sbjct: 1020 LYQDRIALLQSLLNYEASILRNKAGFIKAVTSGD--IDLTSGRRSKQETSKKLKEHGFLD 1077 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 ++ R ++ + L + +L++ L LT + +L + Sbjct: 1078 SVELNAIKNENVLWKRRQFASEKGEGGSNLEPMN---FDYLLNMPLSSLTSEKIRELGEH 1134 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELV 509 ++ E+ + L ++L L+ Sbjct: 1135 AATKDKELEEMKS--TTPVDLWRRDLQKLALL 1164 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 116/607 (19%), Positives = 210/607 (34%), Gaps = 69/607 (11%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + V+ + + + ++++ R++P DG KP R++L++ + Sbjct: 650 ESMDYSVRQVSYRDFVDKELILFSIAD-CERSIPSAIDGFKPGQRKILFSCFKRNLVNS- 707 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K ++ G V YH HG+ ++ TIV MAQ F S L+ G FG+ G Sbjct: 708 --IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGGK 764 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 AA RY RL +A + + V++ D+ DG P IP +LVNG++GI Sbjct: 765 DHAAGRYIFTRLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNGTTGIG 823 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +T+IP +N EVI + E++ G G E Sbjct: 824 TGFSTSIPNYNPLEVIRNLERLMRGEEVHK-------------MQPWYFGFTGTME--EK 868 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 GK R EV D + + E+P V + + ++ ++ E + R+ Sbjct: 869 EPGKFISHGRYEVRPDG-----VVCITELPIGVWTQTYKKFLEDMREK---ELVVQYREH 920 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNN-LYSQTQLQVSFG-INMVALH--HGQPKIMNLKDII 351 + + + + + + V + + + QL+ N++A + K + + ++ Sbjct: 921 TTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYWDAESVL 980 Query: 352 AAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP--IIELIRHAPTPAE---- 405 F R + +R + L + R LE + + + ++ R E Sbjct: 981 KDFYLVRLDYYAKRKDYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLEDLQG 1040 Query: 406 ---------AKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ--- 453 AK L + + A + G D T + Sbjct: 1041 RLYLPFPPHAKKKLSSTTVEEEGGEAEPTTQNSEEDVLGMGSAADGGVDDGDAETPEVRR 1100 Query: 454 ---QAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVR 510 +L ++L LT +L + A + + + + L Sbjct: 1101 ATRNYDYLLGMKLWSLTAEMIARLEAQLARARHDTATMEA--RTPKDMWMEDLQVLRTKL 1158 Query: 511 EQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYV-------KYQPLSEYEAQRRG 563 E F R EI + + V LS + K+ + A RR Sbjct: 1159 ESFYAAREVEIATIQRKKVKKPFDARRLRVPILSDKARSLLQKEAEKHLKANSSGAGRRI 1218 Query: 564 GKGKSAA 570 G G A Sbjct: 1219 GGGDDAM 1225 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 112/521 (21%), Positives = 194/521 (37%), Gaps = 45/521 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + ++ + + ++M+ + R++P V DGLKP R+V++A + Sbjct: 725 LDHSTKSITYDDFVNRELILFSMADNM-RSIPSVLDGLKPGQRKVMFACFKRNLTKD--- 780 Query: 64 KKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 +K + G V K YH HG+ ++ TI+ +AQ F S ++ GNFGS G A Sbjct: 781 QKVVELAGYVSEKAAYH-HGEMSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDA 839 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY RL+ A ++ + L++ ++ V DG P V IP +L NG+ GI G Sbjct: 840 ASPRYIHTRLSPFARKIFSVLDEPNLE-VQMEDGKPIEPKVYAPIIPMVLCNGADGIGTG 898 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T+IP ++ E++ + D P G +G E R Sbjct: 899 WSTSIPNYHPMEIVRAIKRRMGRLDSDDTEG-----KPFETMMPWFRGWKGTPEPAEKDR 953 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVK-EKRVEGISALRDES 296 K E D KTG II+ E+P ++ K+ E++ K I ++ + Sbjct: 954 YKF----NGIYETDDKTGE--IIIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDYKEFN 1007 Query: 297 DKDGMRIVIEVKRD--AVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDII 351 D + VI++ + + +L N+VA K ++DI+ Sbjct: 1008 DHKNVNFVIQLDEKHYKDIHKTHEGIMDRFKLNKQVATSNLVAFDSTGRIRKYEKVEDIL 1067 Query: 352 AAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANI---DPIIELIRHAPTPAEAKT 408 F +R ++ + R L L+ A + I + I+ R E + Sbjct: 1068 EEFYVYRLDMYSARKKHWLGVYHSDYRKLKNQARFIQEIIDGELIVSKKRKPVLVQELRD 1127 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 + D A + G +L L + LT Sbjct: 1128 RKYEAFPKNDGKKQATTEEEDMDASDNEDDSVGGA---------ADYDYLLSLPIWSLTL 1178 Query: 469 LEHEKLLDEYKELLDQIAELLRILG-SADRLMEVIREELEL 508 E+L ++ + E +L S L +E Sbjct: 1179 ERLERLNS---AIMKKKGEHDALLAQSEKDLWCQDLDEFTE 1216 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 111/534 (20%), Positives = 207/534 (38%), Gaps = 59/534 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + + I + + + ++++ V R++P V DG KP R+VL+ + + Sbjct: 662 LDPNLDAIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLFCCFKINLTY---E 717 Query: 64 KKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K + V K YH HG+ ++ TIV +AQ F + L+ G+FGS G A Sbjct: 718 IKVGTLAAKVSEKTSYH-HGEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRATGGKDA 776 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RY +L K+A + + +++++ DG+ P+ IP +LVNG+ GI G Sbjct: 777 AAARYIHTQLNKVARSIFHPSDDALFNYLED-DGSPIEPEWYLPIIPMVLVNGAEGIGTG 835 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TNIP N ++I ++DE + G +G+ E R Sbjct: 836 WSTNIPSFNPLDIIKNIRHLMNDEVMDE-------------MYPWYRGWKGVVEKVDDHR 882 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV--KEKRVEGISALRDE 295 ++ + G + + E+P + + + E + + EK I + ++ Sbjct: 883 FRL-------YGKVEQVGPNVLEITEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDMEEQ 935 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDIIA 352 + +R +I + + + + +Y + +L + NMVA K + DI+ Sbjct: 936 HT-NDIRFIITLTPEEMAKTKKIGVYDRFKLVSQVNLKNMVAFDAHGKIRKYDTVLDILT 994 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVA 412 F R E +R + +K + + L I I T + ++ Sbjct: 995 EFYYVRLEFYQKRKDYMSQKLQWTVEKISFQVKFLKMI------IDKEYTVSNKAKKIIM 1048 Query: 413 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQ-------------AQAIL 459 + + + + E E G E+Q +L Sbjct: 1049 KELEGFGFPRINKDGKPHYGSVKIEEIEEGNEIEEGNANEEQDDTVHKPSDIVGSYDYLL 1108 Query: 460 DLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 513 ++L LT +EKL + +E ++ LL++ S L E E ++F Sbjct: 1109 GMKLWDLTMERYEKLRAQKQEKEIELETLLKL--SPKDLWNTDLEAFEKEYQEF 1160 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 113/568 (19%), Positives = 204/568 (35%), Gaps = 74/568 (13%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + + E + + ++M+ + R++P + DGLKP R+VL+A K Sbjct: 646 VDHTKSELGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNL---KQE 701 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K ++ G + YH HGD ++ TI+ MAQ F S L+ +G FGS G Sbjct: 702 IKVVQLGGYIAEHSAYH-HGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDH 760 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY L KI + + + + + ++ DG P+ IP LVNG+ GI G Sbjct: 761 ASARYISTALNKITRYIFPEQDDHLLKYQED-DGQMVEPEYYVPIIPMSLVNGAEGIGTG 819 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T+I +N E++N +D + P GI E G Sbjct: 820 WSTSIQNYNPIELVNQIKNRLDGQPFQ-------------PMTPFYRNFDGIIENLPNGN 866 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 G + + ++ + T I + E+P + E + + + E+ I LR+ Sbjct: 867 GII----KGIIDCNEATD--IITIRELPIKKWTRNYKEWLDKEMAEEG-SQIVDLREYHT 919 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDIIAAF 354 K + I++ V + L N +L NMV + K + DI+ F Sbjct: 920 KYKIHFEIQMVDGFVSD--LKNPLEYFKLSTPASCSNMVLFDSNNKIKKYECVSDIMEEF 977 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALAN-IDPIIEL----------------- 396 + R + +R + + K +L+ + I I++ Sbjct: 978 YQVRLQFYHKRKEYLVSKLDREVQLLDNKLKFIKMVISEEIQIRNVKKIDLVKQLDKNGF 1037 Query: 397 IRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQ 456 R + T + A + + +D E + + + + Sbjct: 1038 TRFSQLIQVKSTKVKAFGDSQKQKKNVDDDESEDEQVSEDEDKQQKKQIQKKLQSTPSID 1097 Query: 457 -----AILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVRE 511 +L + L LT + EKL +E R+ + + I + Sbjct: 1098 ISEFNYLLSMPLFSLTYEKVEKLQEELN---------QRVQSREALVNKEISLMWREDLD 1148 Query: 512 QFGDKRRTEITANSADINLEDLITQEDV 539 +F E +I L + QE + Sbjct: 1149 KFL-----EAYEEMNEIELRLINKQEKM 1171 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 102/521 (19%), Positives = 201/521 (38%), Gaps = 52/521 (9%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L +++ ++ E+ + + ++ R++P V DGLKP R+VL+ Sbjct: 647 LDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIM---KE 702 Query: 64 KKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K +++ G V K YH HG+ ++ TIV MAQ F S + G FGS G Sbjct: 703 LKVSQLSGLVSEKSSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLGGGKDQ 761 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 AA RY RL+ I+ L + + ++++ + D P IP +LVNG+ GI G Sbjct: 762 AAARYIYTRLSSISRYLCPKDDDQILEYLVDED-RRIEPKYYCPIIPTVLVNGADGIGTG 820 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T + +N ++++ C Y++ E+ G G + G Sbjct: 821 WSTAVSNYNPLDLVDNCRRYLNGEEFKE-------------MKPWFRGWTGQLRKNKDGS 867 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 G + + + I + E+P Q+ + + + ++ K V+G + Sbjct: 868 G-YDCYGKWR-----RLADDKIEITELPIQIWTDTYKQHLEKCIEAKIVKG---YSEYHM 918 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALHH--GQPKIMNLKDIIAAF 354 + + VI++ + E + NL +L S NM + K + DI+A F Sbjct: 919 VNTVHFVIDLVQPMSDEDIWTNL----KLVSSVKTTNMHLFNSEYKITKYHTVLDILAEF 974 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 R + R + + IL + + +LI + E L+ Sbjct: 975 CDVRMKGYEERKKAIIESMERQLMILSNKVRFIKMVIEG-DLIINNRKKNELYKDLIKLG 1033 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 + ++ + E D + +L +++ LT + +KL Sbjct: 1034 FDQIRDPKKANKSKPIGESEDAEIKEEDDDDEVGG-----YDYLLGMKIWTLTYEKAKKL 1088 Query: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 515 +++ +L QI + + ++ ++L+ +++ Sbjct: 1089 MEDCDDLKTQIDTVKT-----TPVKDMWLKDLDAFVKKYPQ 1124 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 114/492 (23%), Positives = 193/492 (39%), Gaps = 44/492 (8%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + + + + + + + RA+P V DGLKP R+VLYA G Sbjct: 1002 VDYTVKNLTYSDFVDKELVQFCRAAN-ARAIPSVVDGLKPGQRKVLYASFKRGLT---QE 1057 Query: 64 KKSARVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ G V YH HG+ +++ TIV MAQ F + L+ G FG+ G A Sbjct: 1058 MKVAQLAGYVAEHTAYH-HGEESLHGTIVNMAQDFVGANNLPLLLPSGQFGTRLQGGKDA 1116 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY +LA + + DL+ +++++ DG P+ IP +LVNGS G+ +G Sbjct: 1117 ASARYIFTKLAPLTRTIFPDLDDPVLNYLEG-DGDRIQPEFFAPIIPMVLVNGSEGLGMG 1175 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 T+IP +N T +I+ L + +E P P G +G E Sbjct: 1176 WRTSIPMYNPTNLIDNLLRLLHNE-------------PMEPLTPWYKGFKGSVELTPPFT 1222 Query: 238 GKVYIRARAEVEVDAKTGRETI-IVHEIPYQVNKARLIEKIAELVK-EKRVEGISALRDE 295 K V T +E I + E+P + E + VK EK + + Sbjct: 1223 FK-------TYGVIEPTKKEHIFKISELPVRKWTNDYKELLTTYVKPEKGKPTLKDFSEY 1275 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNN---LYSQTQLQVSFGINMVALH--HGQPKIMNLKDI 350 + + + R A + + N L +L+ +F + MV + M+ DI Sbjct: 1276 NTDQKVDFEVTFPRGAEAKPIPQNAQDLLKLLRLESTFFMKMVLFDRHGAIKEYMDPLDI 1335 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA-NIDPIIELIRHAPTPAEAKTA 409 I F R E +R + + A L + I ++L + AE + Sbjct: 1336 IRDFFEVRMEYYAKRKAAREKVLENEAKRLGDKLKFVKLVISGSLKLFGRSK--AELRQD 1393 Query: 410 LVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGL 469 LV +L A DD + + + + L E + + + +L L Sbjct: 1394 LV-KSGLGNGYENLLSIALDDLTKEKTEQLAHAKQRKDAELAETRRTSAAAMWEHELRAL 1452 Query: 470 EHEKLLDEYKEL 481 +KL +++ Sbjct: 1453 -RDKLDKAHEKK 1463 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 100/510 (19%), Positives = 194/510 (38%), Gaps = 43/510 (8%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + + + + + ++ + + R+LP+V DGLKP R+VLYA K K A++ Sbjct: 696 ITYGDFVDNELIHFSNANNI-RSLPNVVDGLKPSQRKVLYACFKRNL---KDEIKVAQLA 751 Query: 71 GDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G YH HG+++++ TI+ MAQ F S L+ G FG+ G+ AA+ RY Sbjct: 752 GYCAEHTAYH-HGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDAASPRYIF 810 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ ++ L + +++ + DG P+ IP LLVNG GI G +T IP Sbjct: 811 THLSPLSRLLFPVDDDMLLNYKEE-DGQMIEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQ 869 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 HN +V+N A +D+ + G G + RG Sbjct: 870 HNPLDVLNYIRAKLDETKKPAIR-------------PWVKGFEGGITV-DSKRGDYVTEG 915 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIV 304 + ++++ E+P V + ++ + I + + Sbjct: 916 -----IITPQKNSSVVISELPVGVWTNDYKATLVAML---KKAEIKSFSQNHTTTTVSFN 967 Query: 305 IEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVAL--HHGQPKIMNLKDIIAAFVRHRREV 361 ++V + ++ ++ +L+ + NM A + + ++I AF R ++ Sbjct: 968 VKVNAAKLNRLLKGDMLKTFKLRKALSTRNMHAFTTDMKIARYNSPEEIADAFFPVRLDL 1027 Query: 362 VTRRTIFELRKARDRAHILEALAVALANIDP-IIELIRHAPTPAEAKTALVANPWQLGNV 420 R A ++ A + + I+L+ + L + + Sbjct: 1028 YADRKSVLESNMEYSASLMRNKARFIEAVSANKIDLLHGRKSKEATTALLEEMEFSKQSE 1087 Query: 421 AAMLERAGDDAARPEWLE---PEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 ++ + A R E EF + ++ +L+L L LT + + L D+ Sbjct: 1088 LDAIKSNNNIAQRRESSNVVMDEFMSDEESAKGAAKEYDYLLNLPLSSLTLEKIDALNDD 1147 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELE 507 + ++ ++ + L LE Sbjct: 1148 AAKTDTKLEQIKN--TTPADLWREDLNRLE 1175 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 365 bits (936), Expect = 6e-99, Method: Composition-based stats. Identities = 117/618 (18%), Positives = 217/618 (35%), Gaps = 116/618 (18%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + + + + + + ++ R++P++ DGLKP R+VL+A + Sbjct: 801 YSINNQCRNLRYFDFIHKELVLFSRYD-TTRSIPNLLDGLKPGQRKVLFATFKKKLNN-- 857 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A++ G V YH HG+S++ TIV MAQ F S L++ G FGS G Sbjct: 858 -ELKVAQLAGYVAEHSAYH-HGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGK 915 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 A+A RY +L+K + + + + ++ + DG + P IP +LVNG+ GI Sbjct: 916 DASAARYIFTKLSKWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIG 974 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDI-SIEGLMEHIPGPDFP------------TAA- 221 G ++++P +N ++I + E + + + G FP Sbjct: 975 TGWSSSVPNYNPKDIIMNLKRMLKGEMMVPMTPWYKSFKGKIFPIKQKSKKNSASNGGGN 1034 Query: 222 ------------------IINGR---------RGIEEAYRTGRGKV--YIRARAEVEVDA 252 I+ G + I+ G G + + A E Sbjct: 1035 NNRKKTAINSFNNGSNSSILIGSQVDAEDDDLQQIQRTNNMGNGIIEETLELGANYETFG 1094 Query: 253 ---KTGRETIIVHEIPYQVNKARLIEKIAE------LVKEKRVE--GISALRDESDKDGM 301 K ET+++ E+P + E + +E I RD S + + Sbjct: 1095 NWYKKNEETLVITELPVRRWTQDYKEWLESTLLPAPNADNDNIENSWIIDYRDNSSHESV 1154 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHHG--QPKIMNLKDIIAAFVRHR 358 I + ++ + + + + + +L+ + NM H + DI+ F+ R Sbjct: 1155 HITVRMRPEKLQQAEMEGIEKIFRLKSTLSTSNMTLFDHNSRIVRYETELDILKEFIPIR 1214 Query: 359 REVVTRRTIFELRKARDRAHILEALAVALA-NIDPIIELIRHAP----------TPAEAK 407 E+ +R + L K +LE + L I +I L + K Sbjct: 1215 LEMYEKRKNYLLSKLNYEKCLLEQKILFLKLVIQGVIGLSNKSKETLVSDLKKNNIKSIK 1274 Query: 408 TALVANPWQLGNVAAMLE-----------RAGDDAARPEWLEPEFGVRDGLYYLTEQQ-- 454 W + + + + D+ F + Y + QQ Sbjct: 1275 QVQELTQWVGVGGSNLAQNSISGSGIGGNPSFVDSGDNSMDYINFEMNSFDYLESSQQDG 1334 Query: 455 -------------------AQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILG-S 494 +L + L LT + E L +L+ + E ++L S Sbjct: 1335 ILESTSYSRETNKGNELKLFDYLLSMPLWSLTKEKMELLE---ADLIKKTEEYEKLLKTS 1391 Query: 495 ADRLMEVIREELELVREQ 512 + + +EL V E+ Sbjct: 1392 IEEIWNTELDELLKVIEE 1409 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 106/553 (19%), Positives = 198/553 (35%), Gaps = 64/553 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + + + + + ++ ++ R++P + DG KP R+VL+ + Sbjct: 679 VDHSKASLRYLDFINKELVQFSKYDVM-RSIPSMVDGFKPSQRKVLFCALKRNLKSD--- 734 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A+ VG V YH HG+ ++ IV MAQ F S L+ G FG+ G A Sbjct: 735 TKVAQFVGYVSEHSAYH-HGEQSLESCIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDA 793 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY RL+K + + + ++++ +G P IP +LVNG+ GI G Sbjct: 794 ASGRYIYTRLSKYTRTIFHPDDDDVLEYL-TEEGQSIEPKWYCPIIPMVLVNGAEGIGTG 852 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TN+ ++ E+I+ A I L + P G G E R + Sbjct: 853 WSTNVLSYDPREIIHLLRALIRG-----VELHDIHP--------WYRGFTGSVE--RNDK 897 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 + + + T+ + E+P + + + LV + G Sbjct: 898 NGYDFVGKVRM----ASDDRTVDITELPVKTWTQNYKD-LDTLVVSVILLG-----RYHT 947 Query: 298 KDGMRIVIEVKRDAVGEVVLN-NLYSQTQLQVSFG-INMVAL--HHGQPKIMNLKDIIAA 353 + + ++ +A VV + L +L+ +F NMV + ++ DII Sbjct: 948 EHSVHFKCTLQNEAAKSVVDSLGLEKAFKLRSAFSTTNMVLFDRDGKIRRYDSVLDIIKD 1007 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANI---------DPIIELIRHAPTPA 404 F R ++ +R + K IL + + I++L+ Sbjct: 1008 FADLRLDMYVKRKDSLIAKLTKEILILSNKCRFVMMVINGEIVFQKKKIVQLMEELKRKK 1067 Query: 405 -------EAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQ--- 454 +A+T G A D+ E D + +QQ Sbjct: 1068 FMTMMEIDAQTRAAKIGSLKGKTVAASSATSDEVKSEGESSEEEEEADEEAKVEKQQKRS 1127 Query: 455 -AQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 513 +L + + LT E + + ++ L S + + + +L ++ Sbjct: 1128 GYDYLLAMSMWSLTLERVEAMERLLHDKEGELKVLRG--RSIEEMWDRDLVQLLAALDE- 1184 Query: 514 GDKRRTEITANSA 526 D+RR + A Sbjct: 1185 DDERRAKDIQAEA 1197 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 363 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 105/525 (20%), Positives = 198/525 (37%), Gaps = 99/525 (18%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + ++ + + + + + ++M+ + R++P V DGLKP R+V+++ K Sbjct: 638 LDQSMSNITVRDFVNKELILFSMADNI-RSIPSVIDGLKPGQRKVIFSCFKRNL---KTE 693 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++VG V YH HG++++ TI+ +A F S L+ G FGS G + Sbjct: 694 IKVAQLVGYVSEHSAYH-HGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLLGGKDS 752 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY L ++ + + + ++ D P IP +LVNG+ GI G Sbjct: 753 ASPRYIFTNLNPLSRLIFHEHDIPILESQIE-DNLVIEPTYYVPIIPMVLVNGTDGIGTG 811 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TNIP HN ++I +++++ + YR + Sbjct: 812 WSTNIPNHNPLDLIKNIKRLLNNQEP-----------------------EEMIPYYRNYK 848 Query: 238 GKV-YIRARAEV---EVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALR 293 G + I A + +V ++ I V E+P V E + + + + I + + Sbjct: 849 GTITKINAGKYISCGKVFENINKKEINVVELPIGVWTQAYKEYLDQAIADNV---IKSFK 905 Query: 294 DESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDI 350 D S + I+I + + ++L S NMV K N +I Sbjct: 906 DYSTDKTIDILIHMNNNEFS----------SKLTTSISTNNMVCFDRNGKIKKYHNTLEI 955 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPII--ELIRHAPTPAEAKT 408 + F R E +R I+ L+ D + L+ I+ +I +I E Sbjct: 956 LKDFYEVRLEFYNKRKIYRLKLLADELNKLKNKVRF---IEGVITGSIIITQRPLNEIIL 1012 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 L + + + +LD+++ LT Sbjct: 1013 ELERKEFTRYDN----------------------------------YEYLLDMKISSLTK 1038 Query: 469 LEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 513 + KL +EY + EL + + E+L+ +++ Sbjct: 1039 EKINKLREEYNNKNIEYNELKN-----KSIKNLWFEDLDKFEKEY 1078 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 363 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 103/518 (19%), Positives = 191/518 (36%), Gaps = 64/518 (12%) Query: 33 ALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGKYHPHGDSAVYDTIV 90 ++P + DGLKP R+VL+A NK K A++ G V I YH HG+ ++ TIV Sbjct: 313 SIPCLVDGLKPGQRKVLFACFKR---ANKREVKVAQLAGAVAEISAYH-HGEQSLMGTIV 368 Query: 91 RMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 146 +AQ + S L+ G FG+ G +A+ R +L+++ L + + F+ Sbjct: 369 NLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFL 428 Query: 147 DNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIE 206 + P+ IP +LVNG+ G G +TNIP +N E++ I E Sbjct: 429 YE-ENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEP---- 483 Query: 207 GLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI---RARAEVEVDAKTGRETIIVHE 263 ++ + Y+ RGK+ A + TI + E Sbjct: 484 -------------------QKALAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNTIEITE 524 Query: 264 IPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNN- 319 +P + EK+ E + +K+ I ++ ++ V+++ + E+ Sbjct: 525 LPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQD 584 Query: 320 LYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDR 376 L+ +LQ + L + + I F R+E +R + L + + Sbjct: 585 LHQVFKLQAVINTTCMVLFDAAGWLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQ 644 Query: 377 AHILEALAVAL----------------ANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420 + L A + A +D +I++ A + K + Sbjct: 645 SKRLTNQARFILATINNKIVLENKKKTAIVDVLIKMKFDADPVKKWKEDQKLKELRESGE 704 Query: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + E A E + + L++ ++ L L KL+ E KL+ E +E Sbjct: 705 IELDEDDLAAVAVEEGEDISSAAKAVETKLSD--YDYLVGLALIKLSEEEKNKLIKESEE 762 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 518 + ++ L + + L + R+ Sbjct: 763 KMAEVRVLEK--KTWQDLWITDLDNFMSELTSRRLARK 798 >UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=Deltaproteobacteria RepID=Q1NV80_9DELT Length = 711 Score = 362 bits (929), Expect = 3e-98, Method: Composition-based stats. Identities = 150/665 (22%), Positives = 278/665 (41%), Gaps = 100/665 (15%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 + ++LDY VI RA+PD+ DGLKPV RR+L ++ + + + K A VVG Sbjct: 57 ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNM---DDGRFHKVANVVG 113 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKI 130 + + K HPHGD++++ +V +A + L+D QGNFG++ GD A+A RY E RL+ + Sbjct: 114 ETM-KLHPHGDASIFSALVNLA----NKGYLIDRQGNFGNVHTGDGASAPRYIECRLSPL 168 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E M KE +F+D+YDG K P +P ++P LL+ G+ GIAVGMAT I PHN E+ Sbjct: 169 ARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 226 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 + + +E + PDFP +++ Y G G++ RAR E Sbjct: 227 LTASKQILREEPFEL--------FPDFPQGGLLD-----ASGYEDGNGRLRCRARIET-- 271 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 +TI++ +IPY LIE + + + + + I ++ D + +D + I I++ R Sbjct: 272 ---RDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFK-ILSIDDYTAED-VEIEIKLARG 326 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 E + LY+ T ++ N + P IM + +++ R+++ + +L Sbjct: 327 FKAEETIKALYAFTDCEIPISPNFTVIREQTPAIMTVSEVLRENTARLRQLLKKELELDL 386 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 + R++ + + + + + I P+ A T + Sbjct: 387 ARLREKLQARLLEQIFIE--ERLYKQIEECPSLAVVLTTIDKALKPFAAELVRP------ 438 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 490 ++ + + +L++R+++++ + E+ E K + I + + Sbjct: 439 -------------------VSREDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVEK 479 Query: 491 ILGSADRLMEVIREELELVREQFGD--KRRTEITANSADINLEDLITQEDVVVTLSHQGY 548 L L L+ + +++G RRTE+T + ++ + + G+ Sbjct: 480 NLAD---LTAYAIRFLDDLLKRYGQQYPRRTELT-SFKEVQASQVALSNLSLAYDPESGF 535 Query: 549 VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 608 + Q + + L + +D IL S G KV +P Sbjct: 536 LGTQVKTS---------------------AENRLACSEYDKILLISRSG---WYKVVAVP 571 Query: 609 EATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT 668 + + D+ I ++ + VK+ +F + Sbjct: 572 DKIFVG---HDLKWWGKAADKTIFNLVYRDGAQNLCY---------VKRFTTPKFILDKE 619 Query: 669 AGKVA 673 A Sbjct: 620 YRLFA 624 >UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteroidetes RepID=D2QEJ6_9SPHI Length = 904 Score = 357 bits (917), Expect = 8e-97, Method: Composition-based stats. Identities = 160/841 (19%), Positives = 329/841 (39%), Gaps = 135/841 (16%) Query: 2 SDLAREITPVNIEEEL-----------KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 50 DL E P++ + E+ ++ +LDYA VI+ RA+P V DGLKPV RR+L+ Sbjct: 30 DDLVPEEQPIDTKTEVLHDQTVVSGLYENYFLDYASYVILERAVPAVEDGLKPVQRRILH 89 Query: 51 AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 110 A+ + + + K A V+G + ++HPHGD+++ + +V + Q + +L D QG++G Sbjct: 90 ALKEM---DDGRFNKVANVIGQTM-QFHPHGDASIGEALVNIGQ----KELLFDTQGSWG 141 Query: 111 S-IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 169 GD AAA RY E+RL+K A + + +T ++ +YDG ++ P +P K P LL Sbjct: 142 DVRTGDGAAAPRYIEVRLSKFAQDAI--YNDKTTEWQLSYDGRKREPITLPVKFPLLLAQ 199 Query: 170 GSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI 229 G GIAVG++T I PHN E+I+ + + D+ +S+ PDF T +I+ Sbjct: 200 GVEGIAVGLSTKILPHNFNELIDASINILKDKPVSL--------FPDFQTGGLID----- 246 Query: 230 EEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRV--- 286 Y G +R RA++E ++ + + ++PY V ++LI+ I + + ++ Sbjct: 247 VSNYNDGHRGGKVRVRAKIEE---VDKKILAIRDVPYGVTTSQLIDSIVKAAELGKIRIK 303 Query: 287 ---EGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPK 343 ++A+ D + KD + I++ ++ +V ++ LY+ T +VS N + +P Sbjct: 304 APSRNVAAVVDNTAKD-VEILVHLQPGVSPDVTIDALYAFTDCEVSISPNACVIIGDKPH 362 Query: 344 IMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP 403 +++ DI+ ++ R + +R + + N I I T Sbjct: 363 FVSVTDILRVNTHQTVHLLQRELEIRRSELMERLLYSSLEKIFIEN--RIYRKIEECETF 420 Query: 404 AEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRL 463 A+ + + +T+ + ++++ Sbjct: 421 EAVLEAIDKALKPHKKLFYRV-------------------------ITQDDLIRLTEIKI 455 Query: 464 QKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD--KRRTEI 521 ++++ + K + + L ++AE L + + + +++++G +R+TEI Sbjct: 456 KRISKYDGFKAEELMRRLEQELAETEDNLAN---ITRFAIAYYKDLQKKYGKGRERKTEI 512 Query: 522 TANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL 581 A I + + G++ +K+++++ Sbjct: 513 RAF-NTIAASVVAAANQKLYVDREGGFI-------------------GYGLKKDEYVSDC 552 Query: 582 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE 641 + F G+ +K + E + V++ + +I ++ + Sbjct: 553 SDIDDIII---FRRDGKCMVVK---IAEKVFVGKDIVYVSVFKKNDERKIYNLVYLDGK- 605 Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLF---- 697 + K+ +T R R +L + ++ Sbjct: 606 --------SGISMAKRFPVTGVTRDREYDLTMGN--PKSKLTYFSANDNGEAEVITINLT 655 Query: 698 ---SAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGK 754 +A+ K F +SV + G + V + + G Sbjct: 656 AQCTAKIKQFDFDFASVGIKNRSAQGNILTKYP---------VRKITQKSGGVSTLGGVD 706 Query: 755 RTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 814 +R +G + ++ + V D + +T R +EI+I Sbjct: 707 IWYDEHLGRLNRDERGRLLGNFDAKD-----CILVVYKDGLYELTSFDLTNRYEPNEIAI 761 Query: 815 V 815 + Sbjct: 762 L 762 >UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacteria RepID=GYRA_SPICI Length = 227 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 137/219 (62%), Positives = 173/219 (78%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 D +I ++I +E+K+ +LDYAMSVIV RA+PDVRDGLKPVHRR++YAM L + K Sbjct: 9 YDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEK 68 Query: 62 AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121 +KKSAR+VG+VIGKYHPHGD+AVY+ +VRMAQ FS RY L+DG GNFGS+DGD AAMR Sbjct: 69 QHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMR 128 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 YTE +++KIA E++ D+EKET F+DNYDG+E+ P +P PNLLVNG+SGIAVGMATN Sbjct: 129 YTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATN 188 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTA 220 IPPHNL EVI+G +A + +I+ LM+ I GPDFPT Sbjct: 189 IPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 351 bits (902), Expect = 5e-95, Method: Composition-based stats. Identities = 102/535 (19%), Positives = 183/535 (34%), Gaps = 71/535 (13%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 E +N ++ + + ++ + L+ Sbjct: 662 DHEAKLINYKDFVNKELILFSRAD--------------------LFGSFKKKLY---KEI 698 Query: 65 KSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGS--IDGDSAA 118 K A+ +G V YH HG+ ++ TI+ MAQ F S L+ G FG+ + G A Sbjct: 699 KVAQFIGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNINLLKPNGQFGTCNLGGKDHA 757 Query: 119 AMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178 + RY L+ + L + + + ++++ N DG P+ IP +LVNGS GI G Sbjct: 758 SARYIYTELSPVTRCLFHEHDDKLLEYL-NEDGKSIEPNWYMPIIPLVLVNGSEGIGTGW 816 Query: 179 ATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG 238 ++ IP +N E+I ++ E++ P G RG E G Sbjct: 817 SSYIPNYNPREIIANVRRLLNGEEL-------------VPMDPWYKGFRGTIEKSAK-EG 862 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLI---EKIAELVKEKRVEGISALRDE 295 + + +T + E+P + E I + + I R Sbjct: 863 GYIVNGTV-----TEIDEQTFRITELPIRKWTQDYKQFLESITDGAPNVKDPLIEDFRQN 917 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH-HGQPKIMNLKDIIAA 353 D + I I++K + + ++ L+ + +L + NM G K + I+ Sbjct: 918 GDDAIVDIEIKMKPEKIATILQEGLFKKFKLTSTISTSNMHLFDAEGNKKFDTPEQILEE 977 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALA---NIDPIIELIRHAPTPAEAKTAL 410 F R + + + L IL+ + N + I+ + A E K Sbjct: 978 FFPLRLDYYEKSKEYILGNLNRLLLILDNKVRFILGVVNGEIIVSNRKKAELLIELKEKG 1037 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL---TEQQAQAILDLRLQKLT 467 + G +D E + E + T +L L + LT Sbjct: 1038 FTPMPRKGKSTKPQVAGANDDDSEEQEDAEPETASQSVSVEGATWGDYDDLLSLPIGTLT 1097 Query: 468 GLEHEKLLDEYKELLDQIA----------ELLRILGSADRLMEVIREELELVREQ 512 +KLLDE E + L + +L E+ + E R++ Sbjct: 1098 LESVQKLLDEKTEKEKEYEILSGTPTTSLWLKDLDEFEKKLDELDLKYAEDDRKR 1152 >UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YYJ6_BRAFL Length = 1181 Score = 351 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 151/362 (41%), Gaps = 38/362 (10%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 + E + + ++ S R++P + DGLKP R+VL+ +K K A++ Sbjct: 153 LTFNEFVHKELVLFSNSDN-ERSIPSLVDGLKPGQRKVLFTCLKRN---DKREVKVAQLA 208 Query: 71 GDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V + YH HG++++ TI+ +AQ F S L+ G FG+ G AA+ RY Sbjct: 209 GSVAEMSAYH-HGETSLMGTIINLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIF 267 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L+ +A +L ++ +++ + D + P+ IP +LVNG+ GI G +T +P Sbjct: 268 TMLSTLARKLFNTFDEPMLNYQYD-DNQKIEPEWYIPLIPMVLVNGAEGIGTGWSTKVPN 326 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +++ E+IN L ID +D P +G E + Sbjct: 327 YDVREIINNMLRMIDGKDP-------------LPMNPSYKNFKGDIEELE--ENRFVANG 371 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGM 301 + TI + E+P + E + E++ EK I+ ++ + Sbjct: 372 EVAI-----LDNNTIEITELPIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTDTTV 426 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALHHG--QPKIMNLKDIIAAFVRHR 358 R V+ + + + + L+ +LQ + NMV H ++ I+ F R Sbjct: 427 RFVVSMTEEQLMKAEAAGLHKVFKLQSNIASTNMVLFDHNGCLRTYNSVHQILQEFFDLR 486 Query: 359 RE 360 + Sbjct: 487 LQ 488 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 14/222 (6%) Query: 314 EVVLNNLYSQTQLQVSFGINM-----VALHHG--QPKIMNLKDIIAAFVRHRREVVTRRT 366 V L L++ + +N V H ++ I+ F R E T+R Sbjct: 516 NSVHQILQEFFDLRLQWFLNCLFVVPVLFDHNGCLRTYNSVHQILQEFFDLRLEWYTKRK 575 Query: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 + + A L A + +L+ E L A + V A E Sbjct: 576 DWLMGMLEAEASKLNNQARFILEKIEG-KLVIENKPKRELIQMLQARGYDSDPVKAWKET 634 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTE----QQAQAILDLRLQKLTGLEHEKLLDEYKELL 482 D + L+ E + + T +L + L L+ + E+LL + +E Sbjct: 635 QNDKDKPDDLLDVEEEEAESVASSTASRGGPDYNYLLGMPLWNLSREKKEELLKQQREKG 694 Query: 483 DQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN 524 ++ +L + L + + E+ + + + + Sbjct: 695 QELEDLRH--KTPSDLWKDDLNDFVEELERVEQQEKEDEQNS 734 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 102/514 (19%), Positives = 195/514 (37%), Gaps = 58/514 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L V I + + + + ++ + R++P + DGLKP R++L+A K Sbjct: 661 LDTTNGKVTITDFINNELILFSNQNNI-RSIPSIVDGLKPSQRKILFACLKRDL---KDE 716 Query: 64 KKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ G V YH HG+ ++Y TI MAQ F + L+ G FG+ GD A Sbjct: 717 IKVAQLAGYVSEHSAYH-HGEQSLYGTITSMAQDFVGANNIPLLYPSGQFGTRLQGGDDA 775 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY RL K+ + + + +D+ + DG P IP LLVNG+ G+ G Sbjct: 776 ASARYIYTRLNKLTRLIFLKEDDQILDYQEE-DGMIIEPKFYLPIIPMLLVNGAEGMGTG 834 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +T+IP N ++I+ +D S + ++ P G +G E +G+ Sbjct: 835 WSTSIPSFNPIDLIDSLNILLD----SNAENIGNVKLPSLDM--WARGFKGKIEMNDSGK 888 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 ++ ++ ++ + E+P + LVK+ ++ S + + + Sbjct: 889 FI----SKGIFKMKSRGDSIEFDISELPIGEWTENYKSHLQSLVKKGLIK--SKITERNT 942 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHHG--QPKIMNLKDIIAAF 354 ++ + I + + + + +L+ SF + NM + N+ DII F Sbjct: 943 ENSVGFTIAIN---DPDEFSESQLKKLKLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQF 999 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANP 414 R +R +++ + IL L I + KT P Sbjct: 1000 YLVRLSYYHQRKSHLMKQLEKQIRILSNKVKFLNFI-----TSNESNLNTFIKTKKENIP 1054 Query: 415 WQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 474 L NV ++ EQ + D+ + LT +++ Sbjct: 1055 SFLTNVVGIVVDPTTI---------------------EQSFNYLTDMNILSLTHEHKDRI 1093 Query: 475 LDEYKELLDQIAELLRILGSADRLMEVIREELEL 508 + + ++ ++ + + + L Sbjct: 1094 NKQLESAQQELQQVSS--DDPKLMWKRDLKRLRD 1125 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 348 bits (892), Expect = 7e-94, Method: Composition-based stats. Identities = 102/510 (20%), Positives = 188/510 (36%), Gaps = 87/510 (17%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 + L + V + + + + ++ + R++P V DG KP R+VLY + Sbjct: 622 NQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVLYCAFKRNLTSD- 679 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGD 115 K A+ G V YH HG+ ++ TIV +AQ + S + +G FGS G Sbjct: 680 --VKVAQFSGYVAEHSAYH-HGEVSLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGGK 736 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 A+ RY +L ++ D + + ++ + DG + P+ IP++LVNGSSGI Sbjct: 737 DHASARYIFTKLNPKTRQVFVDTDDNLLKYLYD-DGDKIEPECYVPIIPSILVNGSSGIG 795 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +TNIP +N ++++ I ED+ G +G + T Sbjct: 796 TGSSTNIPSYNPKDIVDNVKRLISGEDLVE-------------MKPWYKGFKG--KIMET 840 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295 G + +TI+V E+P E + L+++K IS R++ Sbjct: 841 SPGVYVTKGLY------MPNGKTIVVSELPVGKWTHDYKEHLDGLLEKKI---ISYFREK 891 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF-GINMVALH--HGQPKIMNLKDIIA 352 + I+ + +++ +L+ + NM A K DII Sbjct: 892 HSDTDVLFEIDFVGNPNIDIL--------KLETTIRSTNMHAFDPSGKIKKYDTPLDIIR 943 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEAL--AVALANIDPIIELIRHAPTPAEAKTAL 410 + R+++ +R + L R +I + + + N D II +H + L Sbjct: 944 DWFEVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAELEKL 1003 Query: 411 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLE 470 +L++R+ LT Sbjct: 1004 NFYKVDGK------------------------------------YDYLLNMRISSLTLER 1027 Query: 471 HEKLLDEYKELLDQIAELLRILGSADRLME 500 +L E +L ++ +L + + + Sbjct: 1028 ATELEREAVKLNKELDDLSK--TTETDMWN 1055 >UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringiensis RepID=C3GSY0_BACTU Length = 745 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 172/720 (23%), Positives = 298/720 (41%), Gaps = 97/720 (13%) Query: 15 EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 74 + L Y+DYA V+ RAL D+RDGLKPV R LY M K KS +V V+ Sbjct: 46 QYLVRGYIDYAREVLTNRALEDIRDGLKPVQRYALYWMFKEK---AKDMIKSEQVGAGVL 102 Query: 75 GKYHPHGDSAVYDTIVRMAQPFSLRY-MLVDGQGNFGS-IDGDSAAAMRYTEIRLAKIAH 132 KYHPH + Y+++ +M + Y L+ G+G G S AA RYT ++ + A Sbjct: 103 -KYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161 Query: 133 ELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 192 E+ ++ +D V N+D TE++P+V+P +P +L+ + GIAVG +T P +V N Sbjct: 162 EMFTAMDG--IDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219 Query: 193 GCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEVD 251 YI D S + PDF T I + +E+ +TG+G R + + Sbjct: 220 LVREYIRDGKCST------MIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFI--- 270 Query: 252 AKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGIS--ALRDESDKDGMRIVIEVKR 309 + I+V E+P V +EKI + +++ ++GI+ D + KDG I + Sbjct: 271 ---DGKNIVVTEVPQGVT----VEKIMKEIEKAEIQGITPNGYSDLTGKDGCYFEITCRA 323 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 + VL LY++T LQ F N++A+ + I + II +V+ RR+V+TR+T + Sbjct: 324 KNRVQEVLMELYTKTSLQKKFNSNLLAVESKKLVITGVWGIIDRWVKWRRKVLTRQTRLD 383 Query: 370 LRKARDRAHILEALAVALAN---IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426 L K + A + LA D I+EL + +A + +V Sbjct: 384 LAKLVESAKYTKGFIDLLAIEGARDEIVELTTK-KSDNDAIKRIQEYIQCERDV------ 436 Query: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 A+ I+ RL + K +++Y +IA Sbjct: 437 ----------------------------AEWIIKRRLNQFRNDN--KYINQYANYQIEIA 466 Query: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546 +L + L + D L+ + +L+ + +RRTEIT ++ + ++++ + +S Sbjct: 467 KLEKYLENIDTLILEDMDRFDLLVSK-KHERRTEITNKVYEVE---TVKEDEIEIPVSEC 522 Query: 547 GY-VKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 Y +K L + + G+G + T+ I+ SS G ++ + Sbjct: 523 YYQIKDGFLRKLHVKPTSGEGI-------------IFEGYTNSTIIALSSEGEIFRIYGN 569 Query: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEF-- 663 + T G I L + + L + K + +G V EF Sbjct: 570 DINYLTGNDIGTYIPTYSGLANAQHVQ--LIWATVCDEKKYVLTYEDGFVGFLDTAEFLV 627 Query: 664 ----NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719 ++ G A D+L V + +++ + + S++ Sbjct: 628 GAIKSKYLRNGISA----HADKLTDVREYQEDSVIVVETHDKLYACAHLDSIKMKSRTAR 683 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 109/610 (17%), Positives = 209/610 (34%), Gaps = 109/610 (17%) Query: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 + + + + + ++++ R++P++ DGLK HR+ LY+ K K A Sbjct: 746 VKKLTYSDFINKELVLFSIAD-CERSIPNIVDGLKTSHRKTLYSCFKRNL---KKEIKVA 801 Query: 68 RVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMR 121 +++G V YH HG++++Y TIV MAQ F S L++ G++G+ G ++ R Sbjct: 802 QLIGYVSEHSAYH-HGEASLYSTIVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSAR 860 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 Y RL IA + + + V + DG + P IP +LVNG GI G ++ Sbjct: 861 YIHTRLNDIARAVYHADDDPILSCVVD-DGKKVQPKFYIPVIPMILVNGCVGIGTGWSST 919 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR---G 238 IP +N ++I ID + P P G G EA + + G Sbjct: 920 IPNYNPRDLIQNMRLAIDGK-------------PLKPIKPWYRGFLGSIEANQGSKVQGG 966 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAEL------------------ 280 + + + K + E+P E + EL Sbjct: 967 QYLSKGIWK-----KLSDNRFEITELPIGFWTQDYRELLDELETPGTRKKKKEEKEKKAA 1021 Query: 281 ------------VKEKRVEG-----------ISALRDESDKDGMRIVIEVKRDAVGEVVL 317 + KRV+ + + + S + + +I+ + Sbjct: 1022 SRKGTKAKPTTTKRSKRVDDDDDNEKVTEATVKSYTNYSSESTIHFIID---TIQPVDEI 1078 Query: 318 NNLYSQTQLQVSFG-INMVALHH--GQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKAR 374 N + +L + NMV + + F R + R F + Sbjct: 1079 N-IEKVFKLVSTINETNMVVFDEEGRIQRFATTTALQEHFFPLRIKHYQMRKDFLSERLS 1137 Query: 375 D---RAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431 + R +A+ N + +I ++ + K + + ++ Sbjct: 1138 EEYSRLSNKARFILAVVNKELVISNVKKVDLINKLKEMKFDRIINKNSNKSARDKIKKKK 1197 Query: 432 ARPEWLEPEFGVRDGLYYLTEQQ------AQAILDLRLQKLTGLEHEKLLDEYKELLDQ- 484 + + + E+Q +L L L LT +KL++E + Sbjct: 1198 NAFDEEDAAISSDEEKDGAQEEQDDDTKGYDYLLSLPLWSLTLERVKKLIEERDSKKKEW 1257 Query: 485 ---------------IAELLRILGSADRLMEVIREELELVREQFGD---KRRTEITANSA 526 + L + L D E ++ + E ++++ R +I+A Sbjct: 1258 DILLSTPIQEIYKRDLDALEKALDDQDAYDESLKNQTESLKKRTKTKALPRAKKISAKVV 1317 Query: 527 DINLEDLITQ 536 E +T+ Sbjct: 1318 KDTKEAPLTK 1327 >UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomatis RepID=C4PNH1_CHLTZ Length = 490 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 122/517 (23%), Positives = 226/517 (43%), Gaps = 55/517 (10%) Query: 12 NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 71 N+ + K+ + YA VI+ RA+P V DGLKPV RR+L+ + + + K A + G Sbjct: 3 NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM---DDGKMHKVANIAG 59 Query: 72 DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKI 130 + HPHGD+ + + +V +A + L++ QGNFG+ + GD AA RY E RL+ + Sbjct: 60 RTM-ALHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114 Query: 131 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 A E++ + + F D+YDG E+ PD++ KIP LL++G GIAVGM T I PHN ++ Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172 Query: 191 INGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV 250 + +A ++D+ S+ PDFP ++ Y+ G G + +RA ++ Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMDASD-----YQDGLGSIVLRATIDI-- 217 Query: 251 DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRD 310 +T+++ EI LI I K ++ I +++D S I I++ + Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTDLP-HIEIKLPKG 272 Query: 311 AVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFEL 370 + +L LY+ T+ QV A++ G+P + +I+ + + + + + Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLILE 332 Query: 371 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 430 + L + + +R + + + + Sbjct: 333 DSLSR--ELYHKTLEYLFIKHKLYDTVRS--------------------MLSKRKTSPSS 370 Query: 431 AARPEWLEPEFGVRDGLYYLTEQQAQA-ILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 +A + ++QA A + L ++K+ + E L + + + Sbjct: 371 SAIHNAVLEALTPFLDTLPAPDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQ 430 Query: 490 RILGSADRLMEVIREELELVREQFGDKRRTEITANSA 526 + L + + ++L Q G R+T+I Sbjct: 431 KDLSQLKKYTVLYIKKLLETYRQLGH-RKTKIAKFDD 466 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 341 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 108/529 (20%), Positives = 211/529 (39%), Gaps = 80/529 (15%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + I + + + + Y+ + + R++P + DGLKP R++L+A Sbjct: 781 IDHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTN---E 836 Query: 64 KKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K +++ G V + YH HG+ ++ TIV+MA F S L+ G FG+ G + Sbjct: 837 IKVSQLSGYVAEQTSYH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDS 895 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY +L +A L +L+ +++++ +G PD IP LLVNGS GI VG Sbjct: 896 ASARYIFTKLEPVARYLFNELDDPLLNYLEE-EGESIQPDYYIPIIPMLLVNGSEGIGVG 954 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEE----AY 233 M+T+IP + ++I+ + ++++ L + IP G +G Y Sbjct: 955 MSTSIPLFSPIDIIDQLMLRLNNQ----VALKKLIP--------WYRGFKGTISPDRHTY 1002 Query: 234 RTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALR 293 RT G + + R + + E+P + E + +L+ + I + + Sbjct: 1003 RT-NGVIKLVGR------------NLEITELPIGRWTSDYKEVLNDLIDKDV---IKSFQ 1046 Query: 294 DESDKDGMRIVIEVKR---DAVGEVVLNNLYSQTQLQVSFGINMVALHHG--QPKIMNLK 348 + + ++ + I + + + ++ N L +L S ++ K+ +++ Sbjct: 1047 ESNTENSVHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVE 1106 Query: 349 DIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKT 408 +II F + R + +R + L+ ++ L L I A Sbjct: 1107 EIIDQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVI---------------ASG 1151 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 L ++ LE +G+ + V L+ L+ ILD+ T Sbjct: 1152 KLKIQGRSKQDLIKELE-SGEIVGFENFGTHPPEVYQHLFSLS------ILDI-----TK 1199 Query: 469 LEHEKLLDEYKELLDQIAELLRILGS-ADRLMEVIREELELVREQFGDK 516 + L +L + +E I S L ++L+ E+ + Sbjct: 1200 ERIDNL---TNQLTKRKSEHQSISSSDPKSLWTADLQQLKEYLEKSDKE 1245 >UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS115 RepID=C4R475_PICPG Length = 1344 Score = 341 bits (875), Expect = 6e-92, Method: Composition-based stats. Identities = 105/543 (19%), Positives = 197/543 (36%), Gaps = 82/543 (15%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L +++ + I + + + ++M+ + R++P + DG KP R++LY ++ Sbjct: 713 LDPDLSIIPISDFINKELILFSMADNI-RSIPSMLDGFKPSQRKILYGCYKRNL---RSE 768 Query: 64 KKSARVVGDV--IGKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K +++ G + YH HGD ++ +I+ +AQ F S L+ G FGS G A Sbjct: 769 IKVSQLAGYIGEHSAYH-HGDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQGGKDA 827 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 +A RY L+KI + + GI G Sbjct: 828 SAARYIFTDLSKITKKNFS----------------------------------CQGIGTG 853 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 +TNIPP N +++ +D +++ G G + Sbjct: 854 WSTNIPPFNPVDIVANIRRLMDGQEMEE-------------MIPWYRGWNGSITKISADK 900 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV--KEKRVEGISALRDE 295 + E + ETI + EIP + + E + + EK+ I + ++ Sbjct: 901 --FRMEGNIE-----QIDDETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDMEEQ 953 Query: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDIIA 352 D ++ VI + ++ + + + L + +L + + NMVA K N+ +II Sbjct: 954 HGMD-LKFVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEIIE 1012 Query: 353 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP---------IIELIRHAPTP 403 + R + RR ++ + + A + I IELI Sbjct: 1013 DYYHVRLDFYQRRKDHLAEVLGNQLEKISSQARFVKMIIENELRVNNRKRIELIEELQRL 1072 Query: 404 AEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRL 463 K + P + A E E + +L + + Sbjct: 1073 NFPKFSKDGKPIWQQVDQEEITEAEIKVEEEEEEEIDDENLLNKSVNIFASYDYLLGMPI 1132 Query: 464 QKLTGLEHEKLLDEYKELLDQIAELLRILGSA--DRLMEVIREELELVREQFGDKRRTEI 521 LT + KLL + E DQ+ ELL++ ++ +EV EE ++ +KR + Sbjct: 1133 WSLTRERYHKLLLQKAEKEDQLTELLKLSAKQIWNKDLEVFLEEWHAFLKEDEEKRASSF 1192 Query: 522 TAN 524 + Sbjct: 1193 KKS 1195 >UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_ECOLX Length = 211 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 210/211 (99%), Positives = 210/211 (99%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 KAYKKSARVVGDVIGKYHPHGD AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH 211 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH Sbjct: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEH 211 >UniRef50_A4ECR3 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECR3_9ACTN Length = 339 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 131/336 (38%), Positives = 211/336 (62%), Gaps = 1/336 (0%) Query: 539 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGR 598 +VVT++H GYVK P++ Y AQ+RGGKG S +KE+D ID + +A+TH+++L FSS+G+ Sbjct: 1 MVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGK 60 Query: 599 VYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658 VY +KV++LP TR ARG IVNLLP E+ E+I +++ EF + AT +G VKKT Sbjct: 61 VYRLKVHELPVGTRQARGTAIVNLLPFEEGEKIASVISCREFPANEYLMFATKSGMVKKT 120 Query: 659 VLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 718 V++ ++R R G +AI L D D L+ V D+++L + GK + F E VRA G +T Sbjct: 121 VMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRATGRDT 180 Query: 719 TGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778 +GVRGI + +G V+ + V G+G + T+ GYGKRT VA+YP ++R +GV +I++TE Sbjct: 181 SGVRGIGMKDGVSVLGMEVTNGNGDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTE 240 Query: 779 RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQR 838 R G + V ++ ++T+ T++R + EIS GR TQGV ++ +++ + + R Sbjct: 241 RKGNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTVDDNDRICAVAR 300 Query: 839 VAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEE 874 + ++ + + + AA+ ++ D +D PE+ Sbjct: 301 MTAAKEKPEGEGAEA-AADTEETPVDLGDGNDMPED 335 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 83/220 (37%), Gaps = 11/220 (5%) Query: 520 EITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFID 579 E A + + ++ + G VK +S Y+ RR G A ++++D + Sbjct: 88 EEGEKIASVISCREFPANEYLMFATKSGMVKKTVMSAYDRSRR--DGLIAINLRDDDALL 145 Query: 580 RLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE 639 + D I+ ++ G+ Q+ R G V + ++ + + Sbjct: 146 NVRRVREGDKIILATTAGKAIMFSEEQVRATGRDTSG---VRGIGMKDGVSVLGMEVTNG 202 Query: 640 FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDE---LIGVDLTSGEDEVML 696 + +F+ T G K+T + ++ G+ + + L + + E+ + Sbjct: 203 NGD---LFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTERKGNLAAMKTVGPQHELFI 259 Query: 697 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI 736 + V+R K + G T GV+ + + + D++ ++ Sbjct: 260 VTEGATVIRVKTDEISQTGRATQGVKMMTVDDNDRICAVA 299 Score = 61.9 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 11/186 (5%) Query: 507 ELVREQFGDKRRTEITANSADINL----EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRR 562 + V + RR + A + + + + D ++ + G + A R Sbjct: 119 KTVMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRATGR 178 Query: 563 GGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNL 622 G +K+ + + V N + + + RG V PE RG +G + + Sbjct: 179 DTSGVRGIGMKDGVSVLGMEVTNGNGDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQM 238 Query: 623 LPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGD 680 + + + + ++F+ T TV + E ++ G + + D D Sbjct: 239 TERKGN-----LAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTVDDND 293 Query: 681 ELIGVD 686 + V Sbjct: 294 RICAVA 299 >UniRef50_C0X5K0 Possible DNA topoisomerase IV subunit A (Fragment) n=2 Tax=Enterococcus faecalis RepID=C0X5K0_ENTFA Length = 465 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 150/501 (29%), Positives = 233/501 (46%), Gaps = 50/501 (9%) Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 417 R+ V+ R FEL KAR R HI+ L AL+ +D +I IR + +AK LV Sbjct: 1 RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLV------ 54 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 Y TE+QA+AI+ L+L +LT + L +E Sbjct: 55 ----------------------------SDYAFTEEQAEAIVTLQLYRLTNTDITDLQEE 86 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE--DLIT 535 K L QIAELL IL + L V+++EL V++Q+G+ R T+I +I +E L+ Sbjct: 87 AKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVA 146 Query: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595 QEDVVVT++H+GY+K + Y A + G +KE DF+ NT DH+L ++ Sbjct: 147 QEDVVVTVTHEGYIKRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTN 201 Query: 596 RGRVYSMKVYQLPEATRGARGRPIVN-LLPLEQDERITAILPVTEFEEGVKVFMATANGT 654 +G + V++LP+ G I +L L DE I A+ P E T G Sbjct: 202 KGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKTFVFITKAGM 261 Query: 655 VKKTVLTEFNRLRTAGKV---AIKLVDG-DELIGVDLTSGED--EVMLFSAEGKVVRFKE 708 +K+T + +F RT +KL DE+ V LT+ +D +V L S G +R+ Sbjct: 262 IKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPL 321 Query: 709 SSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGA--ILTATQNGYGKRTAVAEYPTKSR 766 V +G GV+ + L E D VV+ ++ +G I+ TQ G KR E R Sbjct: 322 YEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGR 381 Query: 767 ATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826 A +G++ ++ ++N V + +++ T GT + I R + G +I Sbjct: 382 AKRGLMVLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVID 441 Query: 827 TAEDENVVGLQRVAEPVDEED 847 +D V+ + + V EE+ Sbjct: 442 EQKDGQVMEVHEMHSAVIEEE 462 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 84/225 (37%), Gaps = 15/225 (6%) Query: 642 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEG 701 + V T G +K++ + + + I + +GD L+ + D ++L + +G Sbjct: 147 QEDVVVTVTHEGYIKRSSIRSYTASKPEE---IGMKEGDFLLYAGEVNTLDHLLLVTNKG 203 Query: 702 KVVRFKESSVRAMGCNTTG----VRGIRLGEGDKVVSLIV---PRGDGAILTATQNGYGK 754 ++ + + G + L + ++++ + T+ G K Sbjct: 204 NMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKTFVFITKAGMIK 263 Query: 755 RTAVAEYPTKSR--ATKGVISIKVTERNGLVVGAVQVDDCD--QIMMITDAGTLVRTRVS 810 +T +A++ R ++ +K+ + +D D + ++++ G +R + Sbjct: 264 QTKMADFEP-WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLY 322 Query: 811 EISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSA 855 E+ +VG GV + ED+ VV V D + Sbjct: 323 EVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGG 367 >UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=Q252N7_CHLFF Length = 479 Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 122/514 (23%), Positives = 233/514 (45%), Gaps = 56/514 (10%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 ++ + K+ ++ YA VI+ RA+P + DGLKPV RR+L+ + + + K A + Sbjct: 2 QDVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRM---DDGKMHKVANIA 58 Query: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAK 129 G + HPHGD+ + + +V +A + L+D QGNFG+ + GD AA RY E RL+ Sbjct: 59 GRTM-ALHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSP 113 Query: 130 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 189 +A +++ + + F D+YDG EK PD++P K+P LL++G GIAVGM T I PHNL E Sbjct: 114 LAKDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYE 171 Query: 190 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 249 +I +A +++ ++ PDF + +++ Y+ G G + IRA ++ Sbjct: 172 LIEAQIAILNNRTFTLL--------PDFYSGGVMDASE-----YQDGLGSITIRASIQI- 217 Query: 250 VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKR 309 +T+I+ EI LI I K ++ I +++D S I I++ + Sbjct: 218 ----VDSKTLIIKEICPSTTTETLIRSIENAAKRGVIK-IDSIQDFSTDQP-HIEIKLPK 271 Query: 310 DAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFE 369 + +L L+ T+ QV A+++ +P ++ +I+ + + Sbjct: 272 GIYAKDILEPLFQYTECQVVLTSKPTAIYNNKPVETSISEILKLHTEALEGYLQKELQI- 330 Query: 370 LRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 429 L + H ++L + + +++R L++ + + E Sbjct: 331 LHDELAQEHYYKSL-EYIFIKHRLYDIVRE----------LLSKLGNKVSQEDLHEAVLA 379 Query: 430 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 489 A PE + + L ++K+ + + + + + Sbjct: 380 SLAPFISSLPEAPCKQATSQ--------LASLAIKKILCFNETSYTKDLEGIKKKQTAVK 431 Query: 490 RILGSADRLMEVIREELELVREQFGD--KRRTEI 521 + L + + + L+ + ++G+ KR+T+I Sbjct: 432 KDLSNMKKFT---IKYLKGLLAKYGELGKRKTQI 462 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 97/497 (19%), Positives = 180/497 (36%), Gaps = 55/497 (11%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 + E + ++Y+ + + R+LP+V DGLKP R+VL+ M + + Sbjct: 709 VDSNRNQKTFSEFVNEELVEYSQ-LDLRRSLPNVVDGLKPSQRKVLFTMFGR---YERGE 764 Query: 64 KKSARVVGDVIGK-YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAA 118 + +++ G V + HG+ ++ +TIVR+AQ F S L+ G FG+ G+ A Sbjct: 765 IRVSQLAGAVSQYCGYHHGEESLVNTIVRLAQDFVGSNNLNLLLPLGQFGTRLSGGEDVA 824 Query: 119 AMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178 + RY L+ +A + + + + + + P+ IP +L+NG+ GI G Sbjct: 825 SARYIYTSLSPLARAIFPHPDDKVLKNLVE-ENALVEPEWYCPIIPMILINGAEGIGTGW 883 Query: 179 ATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRG 238 AT I P +VI+ ID + +G Y T Sbjct: 884 ATKILPRCPRQVISNAQRLIDGRPLQD-------------MLPHFRKFQGTI--YETAPR 928 Query: 239 KVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 298 + I + R I+ E+P + + EK+ + + + IS + + Sbjct: 929 QYSISGKVSYRRLKSGLRA--IITELPTGIWNNKYKEKVLDSAIKNGI--ISNYEELHTE 984 Query: 299 DGMRIVIEV--KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKDIIAA 353 + ++ V K + + L +L+ N + L + K + ++I Sbjct: 985 SNVHFILHVIDKPLLSDKKQIKALNRLLKLRSVASENSMILFDEKNVLQKYDSTREIFQE 1044 Query: 354 FVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVAN 413 F RR+ R EL + +E + I E+I AE L Sbjct: 1045 FFEVRRQKYIERRECELVIMEGKLKFIENQVRFVNAIING-EIIIKKKNRAEIIAQLAEK 1103 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 + + A G +LD+ L +L+ E Sbjct: 1104 GFDSNPMKAKNATDG--------------------NCNPPDFAYLLDMPLCRLSNEEILV 1143 Query: 474 LLDEYKELLDQIAELLR 490 L ++ +L ++ L Sbjct: 1144 LQEKRSQLWERFKSLKS 1160 >UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginalis RepID=Q6RCM1_TRIVA Length = 1458 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 104/593 (17%), Positives = 205/593 (34%), Gaps = 86/593 (14%) Query: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 L + T + + + + ++ RA+P DG KP R++L+ + Sbjct: 663 LGTKDTHIKYSDFVDKELILFSSYANY-RAIPSSIDGWKPGQRKILWVCLKNNIKND--- 718 Query: 64 KKSARVVGDVIG--KYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ G V YH HG++++ +TI+ M Q F S + G G+ G+ + Sbjct: 719 LKVAQLSGKVSEQAAYH-HGEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAGGEDS 777 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 + RY L KI + + + + + + +G P IP +LVNG+ GI VG Sbjct: 778 GSPRYVYTALEKITRTIFMKEDDDLLTY-NTDEGLPIEPVTYIPIIPMVLVNGAKGIGVG 836 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGI---EEAYR 234 ++ +P + ++I+ ++DE P +G G + + Sbjct: 837 WSSEVPQYCPQDIIDNLRRKMNDE-------------PMVEMTPWYSGFTGKIIPIQVIK 883 Query: 235 TGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAEL-------------- 280 G + ++ + + K TI + E + + + L Sbjct: 884 DGVKQPIVKWESR-GIVKKIDDTTIEITEFTNGIWTYDYKKFLEGLTVGESLNPHKKLAD 942 Query: 281 --------------------------VKEKRVEG---ISALRDESDKDGMRIVIEVKRDA 311 V+EK G IS R+ + +I V Sbjct: 943 RKAAAAKAKRTKKKAAAGDDPVEQADVEEKVNLGGPKISEFREYHTNVSVHFIITVDDSQ 1002 Query: 312 VGEVVLNNLYSQTQLQVSFG-INMVALH--HGQPKIMNLKDIIAAFVRHRREVVTRRTIF 368 + E+ L +L+ S NM + + + + DII + R + R + Sbjct: 1003 MREIESVGLREFFKLKSSITATNMTLFNAQNKIVQFNSPLDIINDYYPVRMKYYEERHRY 1062 Query: 369 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 428 + + + L A + + I + + A AL + L + + +R Sbjct: 1063 LIDALQLQYKKLSNQARFIREVIAGI-IKVNGVPRATILAALERGNYDLYDDKELTKRIK 1121 Query: 429 DDAARPEWLEP--------EFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480 + + L E+ +L +++ LT + +KL DE K+ Sbjct: 1122 FADEVIQQHNEEEEEQNEFKSESNADHLALLEKGYDYLLAMKIWTLTKEKADKLDDEAKK 1181 Query: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDL 533 ++ E+ + + ++ E+ + F KR N AD + Sbjct: 1182 KNQELEEM--LKKKPIDFYKEDLDKFEVEWKAFEAKREKTRLENVADAEKVNR 1232 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 96/520 (18%), Positives = 203/520 (39%), Gaps = 63/520 (12%) Query: 2 SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNK 61 L V + +++S + R++P DGLKP R++++ + + +K Sbjct: 336 DTLDYSKPNVRYRNFVTDCLAMHSISDNL-RSIPSSIDGLKPTQRKIIHTL----LNHSK 390 Query: 62 AYKKSARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFG--SIDGD 115 K + + G V +YH HG+ ++ T+V MAQ F S L+ G FG S+ G Sbjct: 391 QEYKVSSLSGLVTTYAQYH-HGEQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGK 449 Query: 116 SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 175 AA RY +L+ + +L + + T++++D +G P +P +L+NG+ GI Sbjct: 450 DAAQARYISTKLSSLTTKLFNEDDLHTLNYLDE-EGYTVEPFWFTPILPLVLINGAEGIG 508 Query: 176 VGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRT 235 G +T +P N E+ + E+ E +P T +I G Sbjct: 509 TGWSTQVPNFNPREICQQIKRKLRGEEFE-----ELVPWYKGFTGSITAGTNQYIA---- 559 Query: 236 GRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVN---KARLIEKIAELVKEKRVEGISAL 292 +G + + + EIP + + I+ E+ + K I + Sbjct: 560 -KGSFI------------QHKNHLYITEIPPKKSVKEYQAFIQSKMEVAEGKSEPEILDM 606 Query: 293 RDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ---PKIMNLKD 349 ++ + + ++V EV+ ++ +LQ + + + L + + + N+ + Sbjct: 607 KEYHAGNKVCFELKVTD----EVLKQDIEKYFKLQTTIAMTNLVLFNEKGLLKRYSNVSE 662 Query: 350 IIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA-NIDPIIELIRHAPTPAEAKT 408 I+ F + R + R + L K ++ ++++ + + ID I+L Sbjct: 663 ILDEFYQTRIKFYQLRKEYLLSKYQNELELVQSKSKFIEGMIDNSIQL------------ 710 Query: 409 ALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTG 468 ++ + ++ E ++ +D E+Q +L + + + Sbjct: 711 ---RGLKKMEMCKKLQSLGFKGISKMEKVKSTRISKDFDADNLEKQYDYLLSMPMWNFSE 767 Query: 469 LEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 508 + + K+L DQI L + + ++ +E Sbjct: 768 EKITAFKQQIKQLQDQITALNK--KTPQQIWSEDLDEFLE 805 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 90/511 (17%), Positives = 189/511 (36%), Gaps = 88/511 (17%) Query: 7 EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66 + ++I ++ ++++++ + R++ + DGLKP R+V+YA K K Sbjct: 639 SVKNLSITHFVRKDLVNFSLAD-LKRSIAHMADGLKPSQRKVMYACFHKNL---KDEMKV 694 Query: 67 ARVVGDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAM 120 A++ V YH HG+ ++ DTIV++A + S L++ G FG+ G A+ Sbjct: 695 AQLAAYVADKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQT 753 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RY +L K A ++ + ++++D+ DG PD +P +LVNG+ GI G + Sbjct: 754 RYIFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSC 812 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 +PP N ++ ++ D G +G Sbjct: 813 YVPPFNPKDIKENIQRSLEGHDFKE-------------MKPWFRGFKGKV---------F 850 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 E + + V E+P E + L+++K + G + S + Sbjct: 851 KEDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLMEKKVISGFTN---NSTTED 907 Query: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH---GQPKIMNLKDIIAAFVRH 357 + I G+ VL +L +++ SF + + L H G K + ++I+ FV Sbjct: 908 VDFEIM---GYTGKDVLKDL----KMRKSFHTSNMHLFHPTKGIYKYSSPEEILKDFVDL 960 Query: 358 RREVVTRRTIFELRKARDRAHILEALAVALANIDP--IIELIRHAPTPAEAKTALVANPW 415 R + +R ++ + +A + + + + I+ R Sbjct: 961 RLDHYKKRKEHLIKVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLE----------- 1009 Query: 416 QLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLL 475 ++ +L+++ + T +LL Sbjct: 1010 --------------------------RQLAQIFPQIGGTYDYLLNIKTVQYTEECVRELL 1043 Query: 476 DEYKELLDQIAELLRILGSADRLMEVIREEL 506 E K+ +++ + S + ++ + + Sbjct: 1044 REAKQAREELEVMKG--TSHIDMWKMDIKNM 1072 >UniRef50_C3X0L8 DNA gyrase subunit A (Fragment) n=1 Tax=Fusobacterium sp. 7_1 RepID=C3X0L8_9FUSO Length = 379 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 146/379 (38%), Positives = 248/379 (65%), Gaps = 3/379 (0%) Query: 472 EKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLE 531 EK+ E+KE+ I EL +L +++ +++++EL ++E++ DKRRT+I +I E Sbjct: 1 EKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPE 60 Query: 532 DLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 591 DLI E++++T +++GYVK S+Y+AQRRGGKG SA E+D+ +++ A+T D I+ Sbjct: 61 DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIM 120 Query: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651 F+ RG+VY+++ Y++P+ +R +RGR + N++ L + E++ + + EF +V T Sbjct: 121 VFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPEKEVVFITK 180 Query: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG--EDEVMLFSAEGKVVRFKES 709 NG +KKT L EF + +G +AIK + D++I V L ++E+++ + +G RF Sbjct: 181 NGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTD 240 Query: 710 SVRAMGCNTTGVRGIRLGEGDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRAT 768 ++RA G +T GV+ I L +GD VVS ++ + ILT T+NGYGKRT++ EYP +R Sbjct: 241 TIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKRTSLDEYPQYNRGG 300 Query: 769 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTA 828 KGVI++KV E+NG VV ++V + +++M IT G ++RT ++EIS +GR TQGV +++ A Sbjct: 301 KGVINLKVNEKNGKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIGRATQGVRIMKVA 360 Query: 829 EDENVVGLQRVAEPVDEED 847 +DE V + ++ + D E+ Sbjct: 361 DDEKVAAITKIKKEEDLEN 379 >UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2-alpha (DNA topoisomerase II, alpha isozyme) n=1 Tax=Apis mellifera RepID=UPI0000DB6EE1 Length = 1407 Score = 324 bits (831), Expect = 9e-87, Method: Composition-based stats. Identities = 97/516 (18%), Positives = 180/516 (34%), Gaps = 94/516 (18%) Query: 11 VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 70 V+ + + + Y+ V R++P++ DG KP R+VLY +K K A++ Sbjct: 683 VSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVLYTCLKRN---DKREVKVAQLA 738 Query: 71 GDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYTE 124 G V YH HG+ ++ TI+ +AQ F S L+ G FG+ G AA+ RY Sbjct: 739 GSVAEHSAYH-HGEVSLMSTIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAASPRYIF 797 Query: 125 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 184 L I IP Sbjct: 798 TMLRYI--------------------------------------------------YIPN 807 Query: 185 HNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 244 +N E+I +D D P P P +G+ E+ G + I Sbjct: 808 YNPREIIENLYRMMDGAD----------PKPMVP---YYKNFKGVIES--CGDFRYIING 852 Query: 245 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV---KEKRVEGISALRDESDKDGM 301 V G + I + E+P E + E + +K I+ ++ + + Sbjct: 853 EISV-----IGPDKIEITELPIGTWTQTYKETVLEPMLHGTDKTPATITDYKEYNTDTAV 907 Query: 302 RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHHGQ--PKIMNLKDIIAAFVRHR 358 +I + RD + ++ + L+ +LQ + + +M A Q K ++ I+ F + R Sbjct: 908 HFIIMLNRDKLLDLERDGLHKAFKLQTTMTVTSMCAFDENQCLQKYDSVLQILKGFYKVR 967 Query: 359 REVVTRRTIFELRKARDRAHILEALAVAL-ANIDPIIELIRHAPTPAEAKTALVANPWQL 417 E+ +R + + A L A + D I + + L+ ++ Sbjct: 968 LEMYHKRKEYLEGILQAEASKLSNQARFIVEKCDGTIVI--ENKKRKDMIAELIRREYES 1025 Query: 418 GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 477 V + + + E E +T++ +L + L LT + ++LL + Sbjct: 1026 DPV--LAWKLSQNREEEEVAENVDDETVSSTAITKENFDYLLGMTLWSLTKEKKDELLRQ 1083 Query: 478 YKELLDQIAELLRILGSADRLMEVIREELELVREQF 513 + L ++ L + L + + L + Sbjct: 1084 KDDKLAELKRLQA--RTPISLWKEDLDNLLNELNRL 1117 >UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK7_9CAUD Length = 514 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 116/545 (21%), Positives = 219/545 (40%), Gaps = 76/545 (13%) Query: 5 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64 R + ++++ + + Y +V + R++PD+ DGLKPV RR+L++ + + ++ Sbjct: 18 DRHVVDESLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQVCRT---QFE 74 Query: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124 KSAR+ G +G YHPHG+SA+Y V M Q S + G+GNFGS+ D AAA RYT Sbjct: 75 KSARLTGHCMGAYHPHGNSAIYSAAVNMVQHPS---PTLLGKGNFGSMT-DGAAAERYTN 130 Query: 125 IRLAKIAHELMAD--LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 +RL+ + ET FV NYD + P +P ++PN+L+NG GI VG+ T + Sbjct: 131 VRLSHYGQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKL 190 Query: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI 242 P V+ E + + + ++ + + + G + Sbjct: 191 PTFTPESVLEVLNRMFKGEKLQAVDFAKTLKYHHKWGGQLVRSKENQAQWKQMFVGSM-- 248 Query: 243 RARAEVE--VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 A + E +D + + + P N ++K+ + + + + K Sbjct: 249 -ANLQFEAVLDLDRDHKRMTISSWPPGTNLETFMKKVRAMPECHKC--------FNSKGT 299 Query: 301 MRIVIEVKRDAV---GEVVLNNLYSQTQLQVSFGINMV----ALHHGQPKI------MNL 347 IE K + + + T + +F IN+ G +++ Sbjct: 300 TTYQIECKPGFNYDQFDKFVEKVRKATMQRQAFKINVTRREAKTVDGVTTFKTEFLALSV 359 Query: 348 KDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAK 407 D+I + R R + + + ++K + L A+ +D I + +R + A + Sbjct: 360 PDLILQWCRMRVALELKSLAYRIKKQEAAIAYSKLLIYAVDKLDLIFKALRQSDPDASLQ 419 Query: 408 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT 467 L +T +QA+ ILDL+++KL+ Sbjct: 420 KLL--------------------------------------KITAEQAKQILDLQVRKLS 441 Query: 468 GLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSAD 527 L+ KL K ++ +L + +L V++ R ++ ++ Sbjct: 442 KLDQSKLKGTLKTQEQELKQLQTWQAKPKAQ---VLLDLAAVQQALDKDRNFKLKESTQK 498 Query: 528 INLED 532 + + D Sbjct: 499 LTVCD 503 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 101/541 (18%), Positives = 212/541 (39%), Gaps = 82/541 (15%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 +++ T ++ +E + + + M V + R++P + DGLKP R++L+ + L N Sbjct: 574 ITNEDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNMDE 630 Query: 61 KAYKKSARVVGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DG 114 K +++ G V + YH HG+ ++ TI+RM Q F S L+ G FG+ G Sbjct: 631 STEIKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGG 689 Query: 115 DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 174 + AA+ RY LA L + + + + +G P + +P +L+NG+ GI Sbjct: 690 NDAASARYIFTALAPTTRLLFPQADDDLLQ-KNVEEGMVVEPTWLCPIVPLILINGTEGI 748 Query: 175 AVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYR 234 G +T I N ++I+ ID I+ I Y Sbjct: 749 GTGWSTKIANRNPIDIIDMIRRKIDS----------------------ISTEYEIPPFYE 786 Query: 235 TGRGKVYI--------RARAEVEVDAKTGRET--IIVHEIPYQVNKARLIEKIAELVKEK 284 RGK+ + + ++ + T I + E+P + ++ EK++++V+ Sbjct: 787 EFRGKLEVVTPTKFISSGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVET- 845 Query: 285 RVEGISALRDESDKDGMRIVIEVKRDAVGEVVLN---NLYSQTQLQVSFGINMVALH-HG 340 + + + + I + R + +L + +L+ S N V +G Sbjct: 846 --LPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNG 903 Query: 341 QPKIM-NLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANI-DPIIELIR 398 + K N+ +I A F RR++ +R + + + +E + + + IE+ Sbjct: 904 ELKEFGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEI-- 961 Query: 399 HAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI 458 + + + L +++ +A + + + + Sbjct: 962 RSMGRNQLEEKLQEMGFRVDPMATIAKNSKKAN-----------------------YGYL 998 Query: 459 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 518 L++ + +LT E ++L + ++ + R EL+ + E G+ R+ Sbjct: 999 LEMPVSRLTSDEMKRLEERKSRRRTELEAAES--ADWKSVW---RSELDKLAEAVGNNRK 1053 Query: 519 T 519 + Sbjct: 1054 S 1054 >UniRef50_Q5CB96 ATP-dependent Clp protease, ATPase subunit n=1 Tax=Thermotoga sp. KOL6 RepID=Q5CB96_9THEM Length = 652 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 216/365 (59%), Gaps = 7/365 (1%) Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDV 539 +L+ +I+E+ IL ++ E++++E + ++E++GD RRT+IT ++E+LI +ED+ Sbjct: 291 KLVKKISEVKEILEKDVKVKEIMKKEFKYLKERYGDPRRTKITDEELRYDMEELIAEEDI 350 Query: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599 V+TLSH+GY+K PLS Y +QRRGGKG + +++ E+D ++ ++V L ++ G+ Sbjct: 351 VITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNLGKA 410 Query: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659 Y +K YQ+ R RGR I L LE+ E++ A+ P+ + + + T +G +K+T Sbjct: 411 YVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNGKGKD--LVIVTKHGKIKRTA 468 Query: 660 LTEFNRLRTA-GKVAIKLVDGDELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMGCN 717 L EF + G AI++ GDE+I + E +++ + G V+RF S VR MG N Sbjct: 469 LEEFENATSNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGRN 528 Query: 718 TTGVRGIRLGEGDKVVSLIVPR--GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775 GV+ I+L D+VVS+ V +G ILT T+ G+GKRT V Y + R G+ +I Sbjct: 529 AAGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGFGKRTPVELYRIQKRGGTGLRNIS 588 Query: 776 VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVG 835 ++ G VV V ++I+++T G ++R VS+I I+GR T+GV LI + +++ Sbjct: 589 DVKKTGYVVAVRYVRGDEEIVVVTKNGMMIRIPVSDIGIIGRITKGVKLIELGD-DSISK 647 Query: 836 LQRVA 840 + V Sbjct: 648 VAVVK 652 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 9/225 (4%) Query: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAI--KLVDGDELIGVDLTSGEDEVMLFSAEGKV 703 V + G +K T L+ + R GK KL + DE+ V +T + + GK Sbjct: 351 VITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNLGKA 410 Query: 704 VRFKESSVRAMGCNTTG---VRGIRLGEGDKVVSLIVPRG-DGAILTATQNGYGKRTAVA 759 K + G NT G + L E +KVV+L G ++ T++G KRTA+ Sbjct: 411 YVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNGKGKDLVIVTKHGKIKRTALE 470 Query: 760 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 819 E+ + + +GV +I++ + ++ V + +++ T G ++R VS++ +GRN Sbjct: 471 EFENAT-SNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGRNA 529 Query: 820 QGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAP 864 GV I+ D+ VV + V + E L + G Sbjct: 530 AGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGF--GKRTPVE 572 Score = 56.5 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 4/136 (2%) Query: 737 VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIM 796 + + ++T + GY K T ++ Y ++ R KG+ K++E + V V + + Sbjct: 344 LIAEEDIVITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSE-DDEVEFVVVTKNISSTL 402 Query: 797 MITDAGTLVRTRVSEISIVGRNTQG---VILIRTAEDENVVGLQRVAEPVDEEDLDTIDG 853 IT+ G + +I GRNT+G + E E VV L + + + T G Sbjct: 403 FITNLGKAYVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNGKGKDLVIVTKHG 462 Query: 854 SAAEGDDEIAPEVDVD 869 E + Sbjct: 463 KIKRTALEEFENATSN 478 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 318 bits (816), Expect = 4e-85, Method: Composition-based stats. Identities = 94/512 (18%), Positives = 181/512 (35%), Gaps = 78/512 (15%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 + + + + ++ V R++P + DG KP R +LY G K +++ Sbjct: 813 QIPYSDFIDKDLIFFSN-VDNDRSIPSMIDGFKPSQRMILYCCFKRGRHS--KEVKVSQL 869 Query: 70 VGDVIGK--YHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSAAAMRYT 123 G V YH HG++++ I+ MAQ F S ++ GNFG G A+ RY Sbjct: 870 AGYVSENTDYH-HGEASLQGAIIGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYI 928 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 L IA+ + + + E + + + D + PDV IP ++NGS GI G + N+P Sbjct: 929 FTELHPIANYIFREEDDEILKYNYD-DDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNVP 987 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHN +V+ I+++D NG +G E K IR Sbjct: 988 PHNPLDVVANLKRLINEKDPVD-------------MLPWYNGFKGTIEKNPKATNKYIIR 1034 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 + + I + +IP + +E + ++ + DG + Sbjct: 1035 GKYCI------DGNKIHIEDIP---------------IVNGWIEPYESKMEQKEDDGQEL 1073 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVT 363 K L+ + TQ +NM K ++ D++ F +R E+ Sbjct: 1074 QKLYKTGVGN---LDKFLNMTQSLSVTNLNMFNSKGKMTKYNSISDVLYEFYEYRLEMYQ 1130 Query: 364 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 423 +R F K ++ I + + + Sbjct: 1131 KRKEFFFLKLQNDLDISTYKVKFI-------------------------REYLAKTIKIA 1165 Query: 424 LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 483 ++ + A+ E D + + + + D+ + LT + ++L + + Sbjct: 1166 KKKVVEVIAQLETKGYPKMASDHRLPMASRSYRYLTDMSIMTLTDDKIKELENNMEHCQM 1225 Query: 484 QIAELLRILGSADRLMEVIREELELVREQFGD 515 + L + + ++ EL+ + Sbjct: 1226 LYDQY---LNTP--IKKIWLNELDEFLSMYKK 1252 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 96/512 (18%), Positives = 193/512 (37%), Gaps = 74/512 (14%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D +I +NI + + +++ R+LP + DGLK R+V++ + K Sbjct: 683 DSPNKILQLNISTFINEELIKFSIED-CKRSLPHLIDGLKESQRKVIFGLKQWN---GKN 738 Query: 63 YKKSARVVGDVIGKY-HPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSI--DGDSA 117 K A++ V K + HG+ ++DTI++MAQ F + L++ G FG+ G A Sbjct: 739 NIKVAQLGAFVAQKTDYKHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLSGGKDA 798 Query: 118 AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVG 177 A+ RY + I +++ + +++ DG P IP + +NGS G+ G Sbjct: 799 ASPRYIFVNQPPILNKIFRPEDDPILNY--TLDG---EPVFYAPVIPLICINGSVGVGTG 853 Query: 178 MATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR 237 + NIP N +E+I+G +I+ + + + ++ P G G E + G Sbjct: 854 FSCNIPMFNPSEIIDGLKQWINMREQGEKYVFKYKP--------WYKGFTGKIE--KNGS 903 Query: 238 GKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD 297 G+ E + G V E+P + + E + + ++ + + Sbjct: 904 GRYISYGTLSNE-ASNNGMYQYTVSELPINMWTDKFKEMCDQYRESNLIKTCDNYSEVTT 962 Query: 298 KDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHH--GQPKIMNLKDIIAAF 354 + K + E+ + NL +L+ NMV H K L I+ F Sbjct: 963 -------VNFKISSEHELTIENL----KLRSYIHTSNMVMFDHEGKIHKYETLNGIMQRF 1011 Query: 355 VRHRREVVTRRTIFELRKARDRAHILEALAVALAN-IDPIIELIRHAPTPAEAKTALVAN 413 + R ++ +R + L+K I E + + ++ I+++ Sbjct: 1012 CKERIKIYEKRRQYMLQKLNKSLTISENKKRFMEDVMNQKIKIL---------------- 1055 Query: 414 PWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK 473 + + + + + Y E + +L++ + +K Sbjct: 1056 ------------------LQEDEVVHQQLLDMNYYKDDEGEFDYLLNMNIGGFRKKNVDK 1097 Query: 474 LLDEYKELLDQIAELLRILGSADRLMEVIREE 505 L+ + +L I L +++ E Sbjct: 1098 LISKIDDLKKDIMWYTNTNEGQMWLKDILELE 1129 >UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603, partial n=1 Tax=Taeniopygia guttata RepID=UPI000194EBBC Length = 424 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 201/436 (46%), Gaps = 55/436 (12%) Query: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62 D + + + +S +LDYA VI+ RA+P++ DGLKPV RR+L++M + Sbjct: 37 DTSNDTIRHQLRGMYQSWFLDYASYVILERAVPNIEDGLKPVQRRILHSM---KLLDDGR 93 Query: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG-SIDGDSAAAMR 121 + K A +VG+ + ++HPHGD+++Y+ +V++ Q + +LV+ QGN+G ++ G AAA R Sbjct: 94 FNKVANIVGNTM-QFHPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGR 148 Query: 122 YTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181 Y E RL++ A +D V N P V + + GIAVG+++ Sbjct: 149 YIEARLSQFA-----------LDVVYN-------PKVTEWTL------SAEGIAVGLSSK 184 Query: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGR--GK 239 I PHN E+I+ ++Y+ E ++ PDF T I+ Y G G Sbjct: 185 ILPHNFNEIIDAAISYLRGEPFTLY--------PDFFTGGSID-----VSRYNDGERGGV 231 Query: 240 VYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKD 299 V IRA+ E K +T+ + EIPY A LIE I + + +++ I ++ D + Sbjct: 232 VKIRAKIE-----KIDNKTLAITEIPYGKTTATLIESIVKAQEAGKIK-IRSVVD-NTAQ 284 Query: 300 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRR 359 +++ + + ++ LY+ T +VS N + +P + + D++ V R Sbjct: 285 TANVIVYLLPGTSSDKTIDALYAFTDCEVSVSPNCCVISDNKPHFIGVSDVLRHNVDRTR 344 Query: 360 EVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 +++ + +L + R++ H + + + + +A + + + Sbjct: 345 DILGQELRIQLGEVREQLHFASLERIFIEERIYKDKGYEESENREQAIAHIRGRLEKFKD 404 Query: 420 VAAMLERAGDDAARPE 435 + D E Sbjct: 405 IFIREVTDDDIIRLFE 420 >UniRef50_Q6U961 Topoisomerase II medium subunit n=3 Tax=unclassified T4-like viruses RepID=Q6U961_9CAUD Length = 555 Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 103/475 (21%), Positives = 188/475 (39%), Gaps = 42/475 (8%) Query: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 +S+ E+ +++ + L++AM + RA+P + DGLKPV R +Y Sbjct: 103 LSNHLTELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNR 162 Query: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120 + K A + G V + HG+ + +A ++ +++G GNFGS AAA Sbjct: 163 SKFNKVAALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAP 222 Query: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180 RY R+ + ++ D+E V + P IP +L NG GIA G AT Sbjct: 223 RYVFCRVHQNFWDIYRDIELAPVHPEPEH----LPPRYYLPVIPMVLANGVKGIATGYAT 278 Query: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240 NI PH+ +I A I+ + I + P+F +I + Sbjct: 279 NIFPHSYKSLIKCTKAAIEGKPIPRLE----VQFPEFS--GVIRRVSAK---------TI 323 Query: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300 + E+ +G+ + + E+P + ++ + + +L + + I + +++ K+G Sbjct: 324 EVEGLYEL-----SGQTKLTITELPVKFDRLSYVILLDKLKDQGK---IVSYKEQH-KNG 374 Query: 301 MRIVIEVKR--------DAVGEVVLNNLYSQTQLQVSFGINMVALH--HGQPKIMNLKDI 350 R + +KR E + L+ N+ L+ + +D+ Sbjct: 375 FRFDVTLKRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDV 434 Query: 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN-IDPIIEL--IRHAPTPAEAK 407 I FV HRR+ R +E +K+ + A + ID I + + A E Sbjct: 435 IRDFVEHRRKFTAERVEYERQKSEHARDLAWAKFKFINMVIDDKITIKGKQKAELVKEIA 494 Query: 408 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL-TEQQAQAILDL 461 + ++ V + R +D E + Y+L T +A+ I DL Sbjct: 495 SNPDFKGFENELVGMSIYRMTEDETYKLQDEAIKQGKLFDYWLGTTPEAEYINDL 549 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 98/517 (18%), Positives = 184/517 (35%), Gaps = 83/517 (16%) Query: 10 PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 69 +++ + + Y + R++P V DGLKP R+VLYA K R+ Sbjct: 645 ELSLSDFIDKRLSTYHRANN-RRSIPSVFDGLKPSQRKVLYACFSSNIIGKNKKKHVDRL 703 Query: 70 VGDVIG-KYHPHGDSAVYDTIVRMAQPF---SLRYMLVDGQGNFGSI--DGDSAAAMRYT 123 G+V + HG+ ++ +TI+ MAQ F L++ G+FG+ G +A RY Sbjct: 704 TGEVASVAGYHHGEKSLTETIIGMAQDFVGCGNNVRLLNPDGSFGTRLRGGKDHSASRYL 763 Query: 124 EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 183 + KIA + + + + V D P IP ++VNG+ GI G +T IP Sbjct: 764 SSFVEKIARVVFPPEDDDLYEKVFE-DNEYNEPINYIPIIPLIVVNGACGIGTGHSTEIP 822 Query: 184 PHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIR 243 PHN EV + ++++++ G G E KV Sbjct: 823 PHNPLEVCHWIRCWLEEQETPKLS-------------PWWKGFNGTTEVEED---KVK-- 864 Query: 244 ARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRI 303 V K + + E P + + + L +K I + D+ + Sbjct: 865 ---TFGVLEKMSKTKWKIVETPVGLWTYDCKKHLESLETQK---HIKSFEDKYTDEKASF 918 Query: 304 VIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALH--HGQPKIMNLKDIIAAFVRHRRE 360 +I +D + + +L +F + NM AL K + DI+ + R Sbjct: 919 IINTTKDFIPTI------KNLKLSTTFSLRNMTALDEKDNPVKFSTVDDILLKYCPERLR 972 Query: 361 VVTRRTIFELRKA-RDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGN 419 + +R L ++ +D I+E+ + + + + W Sbjct: 973 LYQKRKDKMLADLSQEILKQANKQRFLKDVLDGILEMKQQEELLLQKMEDMAYDKWNGS- 1031 Query: 420 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479 ++ + ++ LT ++ + + Sbjct: 1032 -----------------------------------YDYLIGMPIRTLTKGRLREVGEILR 1056 Query: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDK 516 +L ++ AEL S E+ + ELE+ +++ Sbjct: 1057 KLKEKHAEL-----SERTPKEMWKSELEVFEKKYKRD 1088 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.141 0.376 Lambda K H 0.267 0.0432 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,051,060,910 Number of Sequences: 3077464 Number of extensions: 233332595 Number of successful extensions: 913450 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 858 Number of HSP's successfully gapped in prelim test: 1368 Number of HSP's that attempted gapping in prelim test: 895406 Number of HSP's gapped (non-prelim): 8705 length of query: 875 length of database: 1,040,396,356 effective HSP length: 138 effective length of query: 737 effective length of database: 615,706,324 effective search space: 453775560788 effective search space used: 453775560788 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 98 (42.3 bits)