16/01/2012 09:17:44 : INFO  : Run start: Mon Jan 16 09:17:44 GMT 2012
16/01/2012 09:17:44 : INFO  : Initialised job
16/01/2012 09:17:44 : INFO  : Renaming log file 'phyre2_20120116_091744.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/8a01775cad7e4659/phyre_20120116_091744.log'
16/01/2012 09:17:44 : INFO  : Initialised job:
Sequence
>batch____
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN
KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM
RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT
NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV
YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG
MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE
VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV
AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE
LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV
VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY
SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL
TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG
VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN
GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA
EPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE

16/01/2012 09:17:44 : INFO  : Checked sequence
16/01/2012 09:17:44 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 09:17:44 : INFO  : PSI-BLAST 3 iterations
16/01/2012 09:22:21 : INFO  : PSI-BLAST 5 iterations
16/01/2012 09:27:34 : INFO  : Finished PSI-BLAST
16/01/2012 09:27:34 : INFO  : Running Buildali to generate a3m file
16/01/2012 09:42:35 : INFO  : Converting to HMM
16/01/2012 09:42:42 : INFO  : Calibrating HMM
16/01/2012 09:43:05 : INFO  : Searching HMM database
16/01/2012 10:00:43 : INFO  : Finished buildali
16/01/2012 10:00:43 : INFO  : Predicting secondary structure
16/01/2012 10:00:44 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 10:00:44 : INFO  : Predicting Disordered regions
16/01/2012 10:00:44 : INFO  : Predicted Disorder (Disopred)
16/01/2012 10:00:44 : INFO  : Running memsat_svm check
16/01/2012 10:04:50 : INFO  : Globular protein
16/01/2012 10:04:50 : INFO  : Predicted Transmembrane (memsat_svm) ID '8a01775cad7e4659'
16/01/2012 10:04:50 : INFO  : Initialising fold library search
16/01/2012 10:04:50 : INFO  : Initialised search input
16/01/2012 10:04:50 : INFO  : Building Ensemble models
16/01/2012 10:04:50 : INFO  : Building hh.c1zvuA_.model.1.pdb
16/01/2012 10:04:51 : INFO  : Building hh.c3l6vA_.model.2.pdb
16/01/2012 10:04:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8a01775cad7e4659/hh.c3l6vA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8a01775cad7e4659/c3l6vA_.14.pdb
16/01/2012 10:04:51 : INFO  : Building c1zvuA_.1.pdb
16/01/2012 10:04:52 : INFO  : Building c2wl2B_.2.pdb
16/01/2012 10:04:53 : INFO  : Building c2xcsD_.3.pdb
16/01/2012 10:04:54 : INFO  : Building c3ifzA_.4.pdb
16/01/2012 10:04:55 : INFO  : Building d1ab4a_.5.pdb
16/01/2012 10:04:55 : INFO  : Building c2xcqA_.6.pdb
16/01/2012 10:04:56 : INFO  : Building c3ilwA_.7.pdb
16/01/2012 10:04:56 : INFO  : Building c2xkjE_.8.pdb
16/01/2012 10:04:57 : INFO  : Building c2inrA_.9.pdb
16/01/2012 10:04:57 : INFO  : Building c2novD_.10.pdb
16/01/2012 10:04:58 : INFO  : Building c3qx3B_.11.pdb
16/01/2012 10:04:58 : INFO  : Building c1bjtA_.12.pdb
16/01/2012 10:04:59 : INFO  : Building d1bjta_.13.pdb
16/01/2012 10:04:59 : INFO  : Building c3l6vA_.14.pdb
16/01/2012 10:05:00 : INFO  : Building d1wp5a_.15.pdb
16/01/2012 10:05:00 : INFO  : Building d1suua_.16.pdb
16/01/2012 10:05:01 : INFO  : Building c1zi0A_.17.pdb
16/01/2012 10:05:01 : INFO  : Building c3no0B_.18.pdb
16/01/2012 10:05:02 : INFO  : Building c1zvtA_.19.pdb
16/01/2012 10:05:02 : INFO  : Building c3ku8A_.20.pdb
16/01/2012 10:05:09 : INFO  : Finished HH model building
16/01/2012 10:05:09 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 10:05:16 : INFO  : html domain output complete ID '8a01775cad7e4659'
16/01/2012 13:54:42 : INFO  : Run end  : Mon Jan 16 13:54:42 GMT 2012
