Phyre 2 Results for P0AES4

Email | l.a.kelley@imperial.ac.uk
Description | P0AES4
Date | Thu Jan 5 11:24:06 GMT 2012
Unique Job ID | 8a01775cad7e4659

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1zvuA_ |
|  | 100.0 | 36 | PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit
2 | c2wl2B_ |
|  | 100.0 | 99 | PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8
3 | c2xcsD_ |
|  | 100.0 | 60 | PDB header:isomerase Chain: D: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.1a crystal structure of s. aureus gyrase complex with gsk2994232 and dna
4 | c3ifzA_ |
|  | 100.0 | 52 | PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution
5 | d1ab4a_ |
|  | 100.0 | 98 | Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase
6 | c2xcqA_ |
|  | 100.0 | 60 | PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase
7 | c3ilwA_ |
|  | 100.0 | 51 | PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: structure of dna gyrase subunit a n-terminal domain
8 | c2xkjE_ |
|  | 100.0 | 41 | PDB header:isomerase Chain: E: PDB Molecule:topoisomerase iv; PDBTitle: crystal structure of catalytic core of a. baumannii topo iv2 (pare-parc fusion truncate)
9 | c2inrA_ |
|  | 100.0 | 50 | PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus
10 | c2novD_ |
|  | 100.0 | 47 | PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target
11 | c3qx3B_ |
|  | 100.0 | 25 | PDB header:isomerase/dna/isomerase inhibitor Chain: B: PDB Molecule:dna topoisomerase 2-beta; PDBTitle: human topoisomerase iibeta in complex with dna and etoposide
12 | c1bjtA_ |
|  | 100.0 | 21 | PDB header:topoisomerase Chain: A: PDB Molecule:topoisomerase ii; PDBTitle: topoisomerase ii residues 409-1201
13 | d1bjta_ |
|  | 100.0 | 21 | Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase
14 | c3l6vA_ |
|  | 100.0 | 59 | PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the xanthomonas campestris gyrase a c-2 terminal domain
15 | d1wp5a_ |
|  | 100.0 | 31 | Fold:6-bladed beta-propeller Superfamily:GyrA/ParC C-terminal domain-like Family:GyrA/ParC C-terminal domain-like
16 | d1suua_ |
|  | 100.0 | 28 | Fold:6-bladed beta-propeller Superfamily:GyrA/ParC C-terminal domain-like Family:GyrA/ParC C-terminal domain-like
17 | c1zi0A_ |
|  | 100.0 | 99 | PDB header:isomerase, dna bindng protein Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: a superhelical spiral in escherichia coli dna gyrase a c-2 terminal domain imparts unidirectional supercoiling bias
18 | c3no0B_ |
|  | 100.0 | 24 | PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: aquifex aeolicus type iia topoisomerase c-terminal domain
19 | c1zvtA_ |
|  | 100.0 | 18 | PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the e. coli parc c-terminal domain
20 | c3ku8A_ |
|  | 100.0 | 100 | PDB header:toxin/isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: ccdbvfi:gyra14ec
21 | d1x75a1 |
| not modelled | 100.0 | 94 | Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase
22 | c2oajA_ |
| not modelled | 86.9 | 12 | PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae
23 | c3dm0A_ |
| not modelled | 73.6 | 15 | PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana
24 | c1t3jA_ |
| not modelled | 72.3 | 25 | PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant
25 | c2q6tB_ |
| not modelled | 61.6 | 24 | PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer
26 | c3jroA_ |
| not modelled | 58.2 | 13 | PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice
27 | c1c9lA_ |
| not modelled | 56.3 | 13 | PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:clathrin; PDBTitle: peptide-in-groove interactions link target proteins to the2 b-propeller of clathrin
28 | d2g0da1 |
| not modelled | 56.2 | 16 | Fold:alpha/alpha toroid Superfamily:LanC-like Family:LanC-like
29 | d1jwea_ |
| not modelled | 54.0 | 16 | Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase
30 | c3fokH_ |
| not modelled | 53.6 | 17 | PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115
31 | c3a7pB_ |
| not modelled | 53.5 | 15 | PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16
32 | c2vyeA_ |
| not modelled | 50.0 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex
33 | c3lssA_ |
| not modelled | 48.2 | 14 | PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp
34 | d2v8qb1 |
| not modelled | 47.9 | 22 | Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like
35 | c1q1hA_ |
| not modelled | 40.7 | 28 | PDB header:transcription Chain: A: PDB Molecule:transcription factor e; PDBTitle: an extended winged helix domain in general transcription2 factor e/iie alpha
36 | d1q1ha_ |
| not modelled | 40.7 | 28 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcription factor E/IIe-alpha, N-terminal domain
37 | c3gndC_ |
| not modelled | 38.8 | 14 | PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
38 | d1b79a_ |
| not modelled | 35.4 | 17 | Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase
39 | c1dpuA_ |
| not modelled | 35.3 | 36 | PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88)
40 | d1dpua_ |
| not modelled | 35.3 | 36 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32
41 | d2ayua1 |
| not modelled | 34.1 | 15 | Fold:NAP-like Superfamily:NAP-like Family:NAP-like
42 | c2ayuA_ |
| not modelled | 34.1 | 15 | PDB header:chaperone Chain: A: PDB Molecule:nucleosome assembly protein; PDBTitle: the structure of nucleosome assembly protein suggests a mechanism for2 histone binding and shuttling
43 | c2qjhH_ |
| not modelled | 33.8 | 19 | PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate
44 | c3mkqA_ |
| not modelled | 33.5 | 12 | PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat
45 | c3a7mA_ |
| not modelled | 29.6 | 13 | PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid
46 | d2qrdb1 |
| not modelled | 29.1 | 15 | Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like
47 | c2h47F_ |
| not modelled | 28.6 | 10 | PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
48 | c2jesG_ |
| not modelled | 28.4 | 12 | PDB header:viral protein Chain: G: PDB Molecule:portal protein; PDBTitle: portal protein from bacteriophage spp1
49 | c2b5nD_ |
| not modelled | 28.0 | 12 | PDB header:dna binding protein/protein binding Chain: D: PDB Molecule:damage-specific dna binding protein 1; PDBTitle: crystal structure of the ddb1 bpb domain
50 | d2dloa1 |
| not modelled | 27.5 | 71 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
51 | d1ivsa1 |
| not modelled | 27.3 | 27 | Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain
52 | c1ce0B_ |
| not modelled | 27.2 | 31 | PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model
53 | c2pqaB_ |
| not modelled | 26.5 | 29 | PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer
54 | c3ushB_ |
| not modelled | 26.5 | 23 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q2s0r5 protein from salinibacter ruber,2 northeast structural genomics consortium target srr207
55 | d1k32a3 |
| not modelled | 24.8 | 10 | Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2
56 | d1iwpa_ |
| not modelled | 24.5 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Diol dehydratase, alpha subunit
57 | d1a06a_ |
| not modelled | 23.9 | 30 | Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Protein kinases, catalytic subunit
58 | c2p9mD_ |
| not modelled | 23.7 | 15 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0922; PDBTitle: crystal structure of conserved hypothetical protein mj0922 from2 methanocaldococcus jannaschii dsm 2661
59 | d2pi2e1 |
| not modelled | 23.0 | 29 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB
60 | c3so4C_ |
| not modelled | 22.3 | 18 | PDB header:transferase Chain: C: PDB Molecule:methionine-adenosyltransferase; PDBTitle: methionine-adenosyltransferase from entamoeba histolytica
61 | c2zezC_ |
| not modelled | 21.9 | 41 | PDB header:hydrolase Chain: C: PDB Molecule:s-layer associated multidomain endoglucanase; PDBTitle: family 16 carbohydrate binding module-2
62 | c3ocmB_ |
| not modelled | 21.0 | 8 | PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis
63 | c1ztaA_ |
| not modelled | 20.6 | 34 | PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide
64 | c3ol2B_ |
| not modelled | 20.4 | 18 | PDB header:signaling protein Chain: B: PDB Molecule:plexin-b1; PDBTitle: receptor-ligand structure of human semaphorin 4d with plexin b1.
65 | d1mlda2 |
| not modelled | 19.4 | 18 | Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain
66 | c3izcR_ |
| not modelled | 18.9 | 8 | PDB header:ribosome Chain: R: PDB Molecule:60s ribosomal protein rpl18 (l18e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
67 | c2dfdD_ |
| not modelled | 18.4 | 21 | PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of human malate dehydrogenase type 2
68 | d2f2ac1 |
| not modelled | 18.1 | 16 | Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Glu-tRNAGln amidotransferase C subunit Family:Glu-tRNAGln amidotransferase C subunit
69 | c3e5zA_ |
| not modelled | 18.0 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.
70 | c2hpcF_ |
| not modelled | 17.7 | 17 | PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide.
71 | c1u0iA_ |
| not modelled | 17.6 | 33 | PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer
72 | c2lmiA_ |
| not modelled | 17.5 | 13 | PDB header:rna binding protein Chain: A: PDB Molecule:g-rich sequence factor 1; PDBTitle: nmr structure of the protein bc040485 from homo sapiens
73 | c2xzrA_ |
| not modelled | 17.1 | 17 | PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors
74 | c3czoD_ |
| not modelled | 17.0 | 24 | PDB header:lyase Chain: D: PDB Molecule:histidine ammonia-lyase; PDBTitle: crystal structure of double mutant phenylalanine ammonia-2 lyase from anabaena variabilis
75 | c2a5wC_ |
| not modelled | 16.6 | 19 | PDB header:oxidoreductase Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus
76 | c3kpbA_ |
| not modelled | 16.5 | 17 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0100; PDBTitle: crystal structure of the cbs domain pair of protein mj01002 in complex with 5 -methylthioadenosine and s-adenosyl-l-3 methionine.
77 | c1mldA_ |
| not modelled | 16.4 | 18 | PDB header:oxidoreductase(nad(a)-choh(d)) Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: refined structure of mitochondrial malate dehydrogenase2 from porcine heart and the consensus structure for3 dicarboxylic acid oxidoreductases
78 | c2jjmH_ |
| not modelled | 16.1 | 22 | PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.
79 | c2pwzG_ |
| not modelled | 15.8 | 18 | PDB header:oxidoreductase Chain: G: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the apo form of e.coli malate dehydrogenase
80 | c2pfiA_ |
| not modelled | 15.7 | 12 | PDB header:transport protein Chain: A: PDB Molecule:chloride channel protein clc-ka; PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka
81 | d1y5ha3 |
| not modelled | 15.6 | 3 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
82 | c2oszA_ |
| not modelled | 15.4 | 22 | PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding
83 | c1yx3A_ |
| not modelled | 15.2 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dsrc; PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4
84 | c2v8kA_ |
| not modelled | 15.0 | 35 | PDB header:lyase Chain: A: PDB Molecule:pectate lyase; PDBTitle: structure of a family 2 pectate lyase in complex with2 trigalacturonic acid
85 | c2r60A_ |
| not modelled | 14.8 | 24 | PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
86 | c3ltjA_ |
| not modelled | 14.6 | 21 | PDB header:protein binding Chain: A: PDB Molecule:alpharep-4; PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats
87 | c3m9bK_ |
| not modelled | 14.5 | 20 | PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
88 | c3somO_ |
| not modelled | 14.5 | 23 | PDB header:oxidoreductase Chain: O: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein; PDBTitle: crystal structure of human mmachc
89 | c3ue3A_ |
| not modelled | 14.3 | 23 | PDB header:transferase Chain: A: PDB Molecule:septum formation, penicillin binding protein 3, PDBTitle: crystal structure of acinetobacter baumanni pbp3
90 | c3idwA_ |
| not modelled | 13.9 | 20 | PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2
91 | c3l31B_ |
| not modelled | 13.8 | 10 | PDB header:hydrolase Chain: B: PDB Molecule:probable manganase-dependent inorganic PDBTitle: crystal structure of the cbs and drtgg domains of the2 regulatory region of clostridium perfringens3 pyrophosphatase complexed with the inhibitor, amp
92 | c2d4zB_ |
| not modelled | 13.8 | 21 | PDB header:transport protein Chain: B: PDB Molecule:chloride channel protein; PDBTitle: crystal structure of the cytoplasmic domain of the chloride channel2 clc-0
93 | c2qh1B_ |
| not modelled | 13.7 | 18 | PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ta0289; PDBTitle: structure of ta289, a cbs-rubredoxin-like protein, in its fe+2-bound2 state
94 | d1rp3a2 |
| not modelled | 13.4 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
95 | d1o50a3 |
| not modelled | 13.2 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
96 | d1wi9a_ |
| not modelled | 12.9 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif)
97 | c3kfuJ_ |
| not modelled | 12.9 | 26 | PDB header:ligase/rna Chain: J: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c; PDBTitle: crystal structure of the transamidosome
98 | d1n0ua3 |
| not modelled | 12.8 | 26 | Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components
99 | d2ca1a1 |
| not modelled | 12.7 | 21 | Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Coronavirus nucleocapsid protein