18/01/2012 06:48:04 : INFO  : Run start: Wed Jan 18 06:48:03 GMT 2012
18/01/2012 06:48:11 : INFO  : Initialised job
18/01/2012 06:48:13 : INFO  : Renaming log file 'phyre2_20120118_064802.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/phyre_20120118_064802.log'
18/01/2012 06:48:14 : INFO  : Initialised job:
Sequence
>batch____
MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSNAVEFLPEIKPYRLDLL
HSVTAESEEPLSAGQIKRIETLMRNLMPWRKGPFSLYGVNIDTEWRSDWKWDRVLPHLSD
LTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLG
IEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPG
DRYAQMRNVYFIPSALALKNWLKKCGFVDIRIADVSVTTTEEQRRTEWMVTESLADFLDP
HDPGKTVEGYPAPKRAVLIARKP

18/01/2012 06:48:16 : INFO  : Checked sequence
18/01/2012 06:48:20 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 06:48:21 : INFO  : PSI-BLAST 3 iterations
18/01/2012 06:50:09 : INFO  : PSI-BLAST 5 iterations
18/01/2012 06:53:01 : INFO  : Finished PSI-BLAST
18/01/2012 06:53:04 : INFO  : Running Buildali to generate a3m file
18/01/2012 07:09:07 : INFO  : Converting to HMM
18/01/2012 07:09:12 : INFO  : Calibrating HMM
18/01/2012 07:09:33 : INFO  : Searching HMM database
18/01/2012 07:17:18 : INFO  : Finished buildali
18/01/2012 07:17:20 : INFO  : Predicting secondary structure
18/01/2012 07:17:29 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 07:17:30 : INFO  : Predicting Disordered regions
18/01/2012 07:17:35 : INFO  : Predicted Disorder (Disopred)
18/01/2012 07:17:39 : INFO  : Running memsat_svm check
18/01/2012 07:22:03 : INFO  : Globular protein
18/01/2012 07:22:04 : INFO  : Predicted Transmembrane (memsat_svm) ID '89c1bdf93c541bad'
18/01/2012 07:22:06 : INFO  : Initialising fold library search
18/01/2012 07:22:09 : INFO  : Initialised search input
18/01/2012 07:22:12 : INFO  : Building Ensemble models
18/01/2012 07:22:15 : INFO  : Building hh.c3busB_.model.1.pdb
18/01/2012 07:22:30 : INFO  : Building hh.d2o57a1.model.2.pdb
18/01/2012 07:22:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/hh.d2o57a1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/d2o57a1.1.pdb
18/01/2012 07:22:48 : INFO  : Building hh.d1vl5a_.model.3.pdb
18/01/2012 07:23:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/hh.d1vl5a_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/d1vl5a_.2.pdb
18/01/2012 07:23:04 : INFO  : Building hh.c1vl5B_.model.4.pdb
18/01/2012 07:23:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/hh.c1vl5B_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/c1vl5B_.3.pdb
18/01/2012 07:23:21 : INFO  : Building hh.d1nkva_.model.5.pdb
18/01/2012 07:23:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/hh.d1nkva_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/d1nkva_.5.pdb
18/01/2012 07:23:37 : INFO  : Building hh.c3g5lA_.model.6.pdb
18/01/2012 07:23:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/hh.c3g5lA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/c3g5lA_.6.pdb
18/01/2012 07:23:54 : INFO  : Building hh.d1xdza_.model.7.pdb
18/01/2012 07:24:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/hh.d1xdza_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/89c1bdf93c541bad/d1xdza_.184.pdb
18/01/2012 07:24:11 : INFO  : Building d2o57a1.1.pdb
18/01/2012 07:24:27 : INFO  : Building d1vl5a_.2.pdb
18/01/2012 07:24:43 : INFO  : Building c1vl5B_.3.pdb
18/01/2012 07:24:59 : INFO  : Building c3busB_.4.pdb
18/01/2012 07:25:16 : INFO  : Building d1nkva_.5.pdb
18/01/2012 07:25:31 : INFO  : Building c3g5lA_.6.pdb
18/01/2012 07:25:46 : INFO  : Building d1kpia_.7.pdb
18/01/2012 07:25:59 : INFO  : Building c2fk8A_.8.pdb
18/01/2012 07:26:13 : INFO  : Building d1l1ea_.9.pdb
18/01/2012 07:26:28 : INFO  : Building c3e7pA_.10.pdb
18/01/2012 07:26:42 : INFO  : Building d2fk8a1.11.pdb
18/01/2012 07:26:54 : INFO  : Building d1kpga_.12.pdb
18/01/2012 07:27:07 : INFO  : Building d1tpya_.13.pdb
18/01/2012 07:27:20 : INFO  : Building c3bkxB_.14.pdb
18/01/2012 07:27:33 : INFO  : Building c3bkwB_.15.pdb
18/01/2012 07:27:47 : INFO  : Building d1jqea_.16.pdb
18/01/2012 07:28:01 : INFO  : Building c3cc8A_.17.pdb
18/01/2012 07:28:15 : INFO  : Building d2gh1a1.18.pdb
18/01/2012 07:28:29 : INFO  : Building c3e23A_.19.pdb
18/01/2012 07:28:43 : INFO  : Building c3f4kA_.20.pdb
18/01/2012 07:30:39 : INFO  : Finished HH model building
18/01/2012 07:30:41 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 07:31:45 : INFO  : html domain output complete ID '89c1bdf93c541bad'
18/01/2012 08:10:59 : INFO  : Run end  : Wed Jan 18 08:10:58 GMT 2012
