41 c3polA_ Probab=64.27   E-value=8.7  Score=16.95  Aligned_columns=116  Identities=9%

Q ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHH
Q ss_conf             97887089999508967999999999982789980999987734887189999973136761277404754222100124
Q batch____         1 MKNNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQA   80 (279)
Q Consensus         1 M~~~P~iSViIp~yN~~~~l~~~l~Si~~Qt~~~~eIiiVDdgStD~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      |.++|++.|     +....|+.+|+.+..-...+.=+|+.++      .+.....................+........
T Consensus        24 l~~K~Ll~v-----~Gkpli~~~i~~l~~~~~~~~iiVv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (262)
T c3polA_          24 LPGKPLLLI-----HDRPMILRVVDQAKKVEGFDDLCVATDD------ERIAEICRAEGVDVVLTSADHPSGTDRLSEVA   92 (262)
T ss_dssp             STTGGGSEE-----TTEEHHHHHHHHHTTCCSCSEEEEEESC------HHHHHHHHTTTCEEEECCSCCCCHHHHHHHHH
T ss_pred             CCCCEEEEE-----CCEEHHHHHHHHHHHCCCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
T ss_conf             987114436-----8565799999999848998289997695------88899997539949996488765126899999


Q ss_pred             HHHCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCEEEEC
Q ss_conf             4310110---0001344641173258999999985898499984226425
Q batch____        81 IMLAQGE---YITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQ  127 (279)
Q Consensus        81 ~~~~~~~---~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (279)
                      .......   .+....+.....++.+..++......+...+........+
T Consensus        93 ~~~~~~~~d~~~~~~~d~p~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  142 (262)
T c3polA_          93 RIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHA  142 (262)
T ss_dssp             HHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCC
T ss_pred             HHHCCCCCCEEEEEECCCEEECHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf             85004689889998289533359999999999997699357564454048