Phyre 2 alignment of Q46796 with c2pjwV_

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Job Description | Q46796
Confidence | 1.24% | Date | Thu Jan 5 12:34:16 GMT 2012
Rank | 96 | Aligned Residues | 33
% Identity | 18% | Template | c2pjwV_
PDB info | PDB header:endocytosis/exocytosis | Chain: V: PDB Molecule:vacuolar protein sorting-associated protein 27; | PDBTitle: the vps27/hse1 complex is a gat domain-based scaffold for2 ubiquitin-dependent sorting
Resolution | 3.01 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | L | S | N | L | L | S | K | K | D | S | V | F | V | S | D | L | L | R | E | A | K | V | N | E | L | D | E | T | L | S | T | T | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | A | S | L | V | E | K | X | K | S | R | P | L | N | E | I | L | E | D | S | K | L | Q | N | L | A | Q | R | V | F | A | S | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T |  | S |  | S | T | T | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 361 | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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