 |
| Job Description | Q46796 | | Confidence | 1.24% | Date | Thu Jan 5 12:34:16 GMT 2012 |
| Rank | 96 | Aligned Residues | 33 |
| % Identity | 18% | Template | c2pjwV_ |
| PDB info |
PDB header:endocytosis/exocytosis | Chain: V: PDB Molecule:vacuolar protein sorting-associated protein 27; |
PDBTitle: the vps27/hse1 complex is a gat domain-based scaffold for2 ubiquitin-dependent sorting
|
| Resolution | 3.01 Å |
|
|   |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 |
| Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
L | S | N | L | L | S | K | K | D | S | V | F | V | S | D | L | L | R | E | A | K | V | N | E | L | D | E | T | L | S | T | T | R |
| Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|
|
|   |   |   |
|   |   |
|   |   |   |
|
|   |
|   |   |
|
|
|
|   |   |
|
|   |   |
|
|
| Template Sequence |   |
F | A | S | L | V | E | K | X | K | S | R | P | L | N | E | I | L | E | D | S | K | L | Q | N | L | A | Q | R | V | F | A | S | K |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
| S |
| S | T | T | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
361 | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|