BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (321 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 572 e-162 UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteoba... 460 e-128 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 440 e-122 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 392 e-108 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 324 3e-87 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 320 4e-86 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 317 5e-85 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 315 9e-85 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 283 5e-75 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 281 3e-74 UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 271 2e-71 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 261 3e-68 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 258 1e-67 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 255 2e-66 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 254 2e-66 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 252 1e-65 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 251 3e-65 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 249 1e-64 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 245 1e-63 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 243 7e-63 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 243 8e-63 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 242 1e-62 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 237 5e-61 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 236 9e-61 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 235 2e-60 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 233 6e-60 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 230 4e-59 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 228 2e-58 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 225 1e-57 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 225 2e-57 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 224 4e-57 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 223 5e-57 UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonella... 223 1e-56 UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=R... 221 2e-56 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 220 4e-56 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 218 2e-55 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 218 2e-55 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 217 5e-55 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 216 6e-55 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 215 2e-54 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 215 2e-54 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 214 5e-54 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 211 2e-53 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 211 3e-53 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 209 7e-53 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 209 1e-52 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 209 1e-52 UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=A... 208 2e-52 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 207 5e-52 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 207 6e-52 UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostri... 205 2e-51 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 204 2e-51 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 204 3e-51 UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bactero... 204 4e-51 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 203 6e-51 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 203 8e-51 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 201 3e-50 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 201 4e-50 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 200 7e-50 UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes Re... 199 1e-49 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 198 2e-49 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 195 1e-48 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 195 2e-48 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 194 5e-48 UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylo... 194 5e-48 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 194 5e-48 UniRef50_C6SB16 tRNA-dihydrouridine synthase B n=1 Tax=Neisseria... 192 2e-47 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 191 2e-47 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 191 4e-47 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 191 4e-47 UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylob... 190 6e-47 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 189 2e-46 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 187 3e-46 UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteo... 187 5e-46 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 186 7e-46 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 185 1e-45 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 185 2e-45 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 184 3e-45 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 184 4e-45 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 183 6e-45 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 183 7e-45 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 183 7e-45 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 182 1e-44 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 182 1e-44 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 182 1e-44 UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacte... 182 1e-44 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 182 1e-44 UniRef50_B0SXE6 TIM-barrel protein, nifR3 family n=2 Tax=Cauloba... 182 1e-44 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 182 2e-44 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 181 2e-44 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 181 3e-44 UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacter... 181 3e-44 UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibac... 180 6e-44 UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepI... 180 7e-44 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 179 8e-44 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 179 8e-44 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 179 1e-43 UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia ... 179 1e-43 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 178 2e-43 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 177 3e-43 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 174 5e-42 UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinob... 173 6e-42 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 172 1e-41 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 172 1e-41 UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobi... 171 4e-41 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 170 8e-41 UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=A... 168 2e-40 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 168 2e-40 UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propioni... 168 2e-40 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 168 3e-40 UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacte... 167 4e-40 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 167 4e-40 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 167 4e-40 UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Plancto... 166 8e-40 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 166 9e-40 UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella t... 166 1e-39 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 165 2e-39 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 164 4e-39 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 162 1e-38 UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinom... 162 1e-38 UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinom... 161 3e-38 UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protei... 160 6e-38 UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collins... 160 7e-38 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 158 2e-37 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 157 5e-37 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 156 8e-37 UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conex... 154 3e-36 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 153 6e-36 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 152 2e-35 UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus... 152 2e-35 UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=E... 150 5e-35 UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Tr... 150 5e-35 UniRef50_D2MLS1 TIM-barrel protein, nifR3 family n=1 Tax=Bulleid... 150 6e-35 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 149 1e-34 UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobi... 149 2e-34 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 149 2e-34 UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 148 2e-34 UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candida... 148 3e-34 UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=At... 147 3e-34 UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultu... 147 4e-34 UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga l... 145 2e-33 UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella R... 145 2e-33 UniRef50_A8J121 Predicted protein n=1 Tax=Chlamydomonas reinhard... 142 1e-32 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 142 1e-32 UniRef50_Q4ACC5 TRNA-dihydrouridine synthase B (Fragment) n=3 Ta... 142 2e-32 UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicob... 139 1e-31 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 139 2e-31 UniRef50_D1N0Y1 Dihydrouridine synthase DuS n=1 Tax=Victivallis ... 135 2e-30 UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas ... 135 2e-30 UniRef50_C2KNM7 Possible tRNA-dihydrouridine synthase n=4 Tax=Mo... 135 3e-30 UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=D... 134 4e-30 UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga ol... 134 5e-30 UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermot... 134 6e-30 UniRef50_C7NBC4 Dihydrouridine synthase DuS n=3 Tax=Leptotrichia... 133 1e-29 UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycet... 131 4e-29 UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogace... 130 4e-29 UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 130 7e-29 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 130 8e-29 UniRef50_C1DY86 Dihydrouridine synthase-like family protein n=1 ... 129 1e-28 UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=D... 128 3e-28 UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasid... 128 3e-28 UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammapro... 127 4e-28 UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 127 5e-28 UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dict... 125 1e-27 UniRef50_A4S604 Predicted protein (Fragment) n=2 Tax=Mamiellales... 125 2e-27 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 125 2e-27 UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 125 2e-27 UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesi... 125 3e-27 UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 124 4e-27 UniRef50_B9CKJ9 tRNA-dihydrouridine synthase B n=1 Tax=Atopobium... 124 6e-27 UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicro... 124 6e-27 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 123 8e-27 UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=... 120 5e-26 UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammapro... 120 5e-26 UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis... 120 6e-26 UniRef50_Q3MB47 Dihydrouridine synthase, DuS n=6 Tax=Bacteria Re... 120 6e-26 UniRef50_C8QWB5 Dihydrouridine synthase DuS n=1 Tax=Desulfurivib... 119 1e-25 UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine... 119 1e-25 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 119 2e-25 UniRef50_A6GHV6 Dihydrouridine synthase family protein n=1 Tax=P... 118 2e-25 UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Euka... 117 4e-25 UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Mag... 117 5e-25 UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=... 117 8e-25 UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME 116 1e-24 UniRef50_Q4UGK9 Putative uncharacterized protein n=2 Tax=Theiler... 115 2e-24 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 115 2e-24 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 115 2e-24 UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 ... 115 2e-24 UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseria... 115 2e-24 UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota ... 114 3e-24 UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xeno... 114 5e-24 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 113 1e-23 UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaprot... 112 1e-23 UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=P... 112 2e-23 UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 112 2e-23 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 112 2e-23 UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammapr... 112 2e-23 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 111 3e-23 UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 111 3e-23 UniRef50_Q1N033 Putative uncharacterized protein n=1 Tax=Bermane... 111 3e-23 UniRef50_Q4FQ57 Possible tRNA-dihydrouridine synthase n=24 Tax=G... 111 4e-23 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 110 5e-23 UniRef50_C5LCP2 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 110 7e-23 UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharopha... 110 7e-23 UniRef50_Q884C6 tRNA-dihydrouridine synthase C n=13 Tax=Proteoba... 110 7e-23 UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalob... 109 1e-22 UniRef50_UPI00016C52C4 dihydrouridine synthase DuS n=1 Tax=Gemma... 109 1e-22 UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa... 109 1e-22 UniRef50_C9M7Q0 Dihydrouridine synthase family protein n=1 Tax=J... 108 2e-22 UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax... 108 2e-22 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 108 2e-22 UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamie... 108 3e-22 UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Met... 108 3e-22 UniRef50_C6PST5 Dihydrouridine synthase DuS n=1 Tax=Clostridium ... 108 3e-22 UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tet... 107 4e-22 UniRef50_C4QAZ6 tRNA-dihydrouridine synthase, putative n=1 Tax=S... 107 4e-22 UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 107 7e-22 UniRef50_B9PN28 tRNA-dihydrouridine synthase, putative n=3 Tax=T... 107 8e-22 UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like... 106 1e-21 UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovib... 106 1e-21 UniRef50_B6KUE9 Dihydrouridine synthase domain-containing protei... 106 1e-21 UniRef50_A2DHB4 Putative uncharacterized protein n=1 Tax=Trichom... 106 1e-21 UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coe... 105 2e-21 UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypano... 105 2e-21 UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera Rep... 105 2e-21 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 105 3e-21 UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricale... 105 3e-21 UniRef50_A4RVX6 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 105 3e-21 UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular... 105 3e-21 UniRef50_A3JG66 Putative uncharacterized protein n=3 Tax=Gammapr... 104 5e-21 UniRef50_B0EC90 tRNA-dihydrouridine synthase, putative n=2 Tax=E... 104 5e-21 UniRef50_B8P3J2 Predicted protein (Fragment) n=3 Tax=Agaricomyce... 103 6e-21 UniRef50_B3LAS6 tRNA-dihydrouridine synthase, putative n=6 Tax=P... 103 7e-21 UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=S... 103 7e-21 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 103 1e-20 UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas s... 102 1e-20 UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacte... 102 1e-20 UniRef50_C1MXD1 Dihydrouridine synthase n=1 Tax=Micromonas pusil... 102 2e-20 UniRef50_B6A9H7 Dihydrouridine synthase family protein n=2 Tax=E... 102 2e-20 UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromon... 102 2e-20 UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular or... 102 2e-20 UniRef50_B7XJM7 tRNA-dihydrouridine synthase 1 n=1 Tax=Enterocyt... 102 2e-20 UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Cho... 102 3e-20 UniRef50_Q5CRK5 Ylr401cp-like protein with 2 CCCH domains plus D... 101 4e-20 UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_D... 101 4e-20 UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezi... 101 4e-20 UniRef50_A4AAB0 tRNA-dihydrouridine synthase C n=6 Tax=Gammaprot... 100 5e-20 UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 100 6e-20 UniRef50_A1AT39 Dihydrouridine synthase, DuS n=7 Tax=Desulfuromo... 100 7e-20 UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota R... 100 7e-20 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 572 bits (1473), Expect = e-162, Method: Compositional matrix adjust. Identities = 265/320 (82%), Positives = 295/320 (92%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IGQYQ++N L+AAPMAGITDRPFR+LCY MGAG+TVSEM+SSNPQVW++DKSRLRM+H Sbjct: 30 MYIGQYQIKNCLVAAPMAGITDRPFRSLCYSMGAGMTVSEMLSSNPQVWKTDKSRLRMIH 89 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 DE GIR+VQIAGSDP EMA AARINV +GAQIIDINMGCPAKKVNRKLAGSALL+YP++ Sbjct: 90 SDELGIRSVQIAGSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPEL 149 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ IL VVNAVDVPVTLK+RTGW+PE RNC +IAQLAE CGIQA+TIHGRTRACLFNG Sbjct: 150 IEKILLAVVNAVDVPVTLKVRTGWSPEERNCIKIAQLAERCGIQAVTIHGRTRACLFNGA 209 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYDSIRA KQ V+IP+IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY Sbjct: 210 AEYDSIRAAKQNVTIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 269 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGELLPP+P+AEV+ L+ AHV+ELHDFYG KG RIARKHVSWYL+EHAP+DQFRRTF Sbjct: 270 LETGELLPPMPIAEVQCLMQAHVKELHDFYGQGKGIRIARKHVSWYLREHAPDDQFRRTF 329 Query: 301 NAIEDASEQLEALEAYFENF 320 N IEDASEQLE LEAYFE F Sbjct: 330 NTIEDASEQLEVLEAYFEKF 349 >UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteobacteria RepID=DUSB_VIBCH Length = 322 Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/321 (70%), Positives = 264/321 (82%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG YQL+N LI APMAG+TDRPFR LC GAG+ VSEMMS NP +W++ KS+ RMVH Sbjct: 1 MKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E GIR+VQIAGSDP+ MA+AA+ +VE+GAQIIDINMGCPAKKVN+KLAGSALL+YPDV Sbjct: 61 EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDV 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ IL VVNAV+VPVTLK RTGW +++NC IAQLAEDCGIQAL +HGRTRAC++ GE Sbjct: 121 IEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGE 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYDSI+AVK VSIPVIANGDI P KAR VL+YTGADALMIGR AQGRPWIF+EIQH+ Sbjct: 181 AEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHF 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+ G +P LP++EVK ++ HV LH FYG G RIARKHVSWYLQEH FRRTF Sbjct: 241 LEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTF 300 Query: 301 NAIEDASEQLEALEAYFENFA 321 NAIE A +QL+ALE YF+N A Sbjct: 301 NAIETADQQLDALEGYFDNVA 321 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/317 (65%), Positives = 252/317 (79%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG YQLRNR++ APMAGITD+PFR LC GAGLT SEMMS+NPQVW ++KS+LR+ H Sbjct: 1 MRIGSYQLRNRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAH 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ G+ VQIAGSDP EMA AA INVE GAQIIDINMGCPAKKVNRKLAGSALLQ+PD+ Sbjct: 61 SEDLGLNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ IL EVV+AV+VPVTLKIRTGW +RNC +I ++AE CGIQALT+HGRTRACLF GE Sbjct: 121 VEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEGE 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I+AVKQ ++IPVIANGDI KA+ VL+YTGADA+MIGRAA G PW+F+ +++ Sbjct: 181 AEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLFQAVENL 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 ++ + L E + H++ELH FYG KGYRIARKHV+WYLQ P+ F++TF Sbjct: 241 IEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIARKHVAWYLQGIQPDSVFKQTF 300 Query: 301 NAIEDASEQLEALEAYF 317 NAI D EQL LE +F Sbjct: 301 NAISDPKEQLIVLEDFF 317 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/317 (62%), Positives = 235/317 (74%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIGQY LRN LI APMAG+TD+PFRTLC +GAG+ VSEM+SS+ +W S KS LR +H Sbjct: 4 VRIGQYTLRNNLILAPMAGVTDQPFRTLCQRLGAGMVVSEMVSSDMSLWNSRKSSLRRIH 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +P R+VQIAG D + MA AA+ NVE+GAQIIDINMGCPAKKV K AGSALL+ + Sbjct: 64 EGDPEPRSVQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEAL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV+AVDVPVTLKIRTGW ++N +A++AE GIQAL +HGRTRA L+ GE Sbjct: 124 VSEILHAVVSAVDVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTRADLYTGE 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I A+KQ VSIPV ANGDIT P KARAVL+ TG D L+IGRAAQGRPWIFREI+HY Sbjct: 184 AEYDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFREIEHY 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L TGE LP L EV+R+L H+ LH FYG G RIARKHV WYL +FR F Sbjct: 244 LRTGEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGKEFRARF 303 Query: 301 NAIEDASEQLEALEAYF 317 NA+ED Q + A+F Sbjct: 304 NALEDTQAQCANVRAFF 320 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 324 bits (830), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 174/324 (53%), Positives = 224/324 (69%), Gaps = 13/324 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG ++L N + APMAG+TD P R LC E+GAG+ V+EM++S+P++ S KS LR H Sbjct: 15 LKIGGFKLANPVALAPMAGVTDLPMRELCVELGAGMAVAEMLTSDPKLLASRKSSLRRRH 74 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + G+R+VQI GS+P+++A+AAR+N + GA +IDINMGCPAKKV +K AGSALL D Sbjct: 75 SAKGGLRSVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDR 134 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV+AVDVPVTLKIRTG +P+ RN IA++AED GIQ LT+HGRTRA F GE Sbjct: 135 VAEILKAVVSAVDVPVTLKIRTGVSPQQRNGVAIAKIAEDAGIQLLTVHGRTRADRFKGE 194 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEY +I + VSIPV+ANGDIT P +A AVL TGA +MIGRAA GRPW+ I Sbjct: 195 AEYHTIERIVDAVSIPVLANGDITTPAQALAVLQKTGAAGIMIGRAALGRPWLPGAIAQS 254 Query: 241 LDTGELLPPLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPND----- 294 L L PLP LAE + H+ LHDF+G G RIARKHV W++ + ND Sbjct: 255 L--AGLRTPLPSLAERFLQMRCHLTALHDFHGDFMGVRIARKHVGWFI-DAIENDVASSF 311 Query: 295 -QFRRTFNAIEDASEQ---LEALE 314 +++R FNA++DA Q L+ LE Sbjct: 312 TEWKRHFNALQDADAQQTLLQTLE 335 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 320 bits (820), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 157/322 (48%), Positives = 213/322 (66%), Gaps = 2/322 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG YQL++++ APMAG +D+PFR +C GA LT SEM+ + ++KS+ R+ Sbjct: 3 IQIGAYQLKSQVFLAPMAGTSDKPFRAICRAQGAALTTSEMVVIQKHLLGTNKSKHRLDF 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 EP ++QIAGS E+A +A+ ++ GA IIDINMGCPAKKV K AGSAL+Q + Sbjct: 63 SGEPAPISIQIAGSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEAL 122 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 VKSIL VV+AVD+PVTLK+RTGW ++N IA++AE+ GIQ L++HGRTR + G Sbjct: 123 VKSILNAVVSAVDIPVTLKMRTGWNVSNKNAPTIAKIAEEAGIQMLSVHGRTREDKYTGM 182 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I+AVK +V IPVIANGDIT KA++VL YTGAD +M+GRA QG PWI EI HY Sbjct: 183 AEYDTIKAVKSQVGIPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNPWIIHEIDHY 242 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ--EHAPNDQFRR 298 L TG+ +PL K+ + H++++H FYG G +++RKH+ WY + F Sbjct: 243 LKTGQKATDIPLNVKKQTILDHIKQIHAFYGEKLGTQLSRKHIFWYATHLDEKNAQTFWE 302 Query: 299 TFNAIEDASEQLEALEAYFENF 320 N I D Q + LE Y Sbjct: 303 KVNKITDHKLQYQLLENYLHQL 324 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 317 bits (811), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 158/306 (51%), Positives = 204/306 (66%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 APMAGITDR +R +C E GA VSEM++S Q+ ES KS R E R VQ+ G+ Sbjct: 15 APMAGITDRVYRDICRESGASYAVSEMVASKKQLRESAKSSTRHADKTETSPRIVQLLGT 74 Query: 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDV 134 P+E+ DAA GA IID+NMGCPAKKV AGSAL+ P+ V I + A+D+ Sbjct: 75 HPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADIFKSLTEAIDL 134 Query: 135 PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS 194 PVT+KIRTG ++ N EIA+LA++ G++A+TIHGRTRA FNG+AEYD+I+AVKQ V Sbjct: 135 PVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTRADKFNGQAEYDTIKAVKQAVD 194 Query: 195 IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAE 254 IPVIANGDI P +A+ VL YTG+D +MIGRAAQG PWIFREI H+L TG+ LP AE Sbjct: 195 IPVIANGDICSPKEAQFVLKYTGSDGIMIGRAAQGYPWIFREIAHFLKTGDCLPSPSFAE 254 Query: 255 VKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALE 314 ++++ H EL YG G++IARKH+ WY Q + R+ FN +E+ QL + Sbjct: 255 FQQVMTRHFSELEILYGEHLGHKIARKHLGWYSQYLPNGTELRKRFNRLENTQAQLNLIN 314 Query: 315 AYFENF 320 YF+ Sbjct: 315 HYFDTL 320 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 315 bits (808), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 155/312 (49%), Positives = 216/312 (69%), Gaps = 4/312 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IG+Y L ++++ APMAG +D+PFR +C E GA LT SEM+ + ++KS+ R+ Sbjct: 1 MNIGKYLLSSKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQKHLLNTNKSKHRLDF 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E ++QIAGS+ +E+A++A+ +E GA IIDINMGCPAKKV K AGSAL++ + Sbjct: 61 RSEQSPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ I+ VVNAV++PVTLK+RTGW E++N IA++AED GI+ L IHGRTRA +NG+ Sbjct: 121 VEDIIKAVVNAVNIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTRAQKYNGD 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+++ +K VSIPV+ANGDIT KA+ VLDYTGADA+M+GRA QG PW+ +I +Y Sbjct: 181 AEYDTVKKIKGIVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNPWLVGQINNY 240 Query: 241 LDTGELLPPLPLAEVK-RLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ--EHAPNDQFR 297 L TG+ P PL + K L+ H+ ++HDFYG G +++RKH+ WY + F Sbjct: 241 LKTGK-SPKAPLLDKKISLILRHILQIHDFYGHKMGTQLSRKHIFWYSMHLDQEKGSAFW 299 Query: 298 RTFNAIEDASEQ 309 N + D SEQ Sbjct: 300 PNINRVTDHSEQ 311 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 283 bits (724), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 151/303 (49%), Positives = 199/303 (65%), Gaps = 2/303 (0%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 L APMAG++DRPFR LC E GAGL V+EMMS+ P++ S KSRLR + ++ R VQ+ Sbjct: 26 LALAPMAGVSDRPFRQLCREYGAGLVVTEMMSAKPELQSSAKSRLRQIDSNDIEPRAVQL 85 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G+DP E+A+AAR V GAQ+ID+N+GCPAKKV ++ AGSAL+ PD V +L +V A Sbjct: 86 LGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPDTVARLLEALVAA 145 Query: 132 VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 VD PV+LK+RTG E RN IA++AE+ GI L+IHGRTRA + GEAEYD+I V Sbjct: 146 VDCPVSLKMRTGPDREWRNAVAIAKIAENAGISMLSIHGRTRADRYEGEAEYDTIAEVVA 205 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 V +PV ANGDIT P KAR V+ +TGA +M+GR A G+PWIF ++ L TG+ LP P Sbjct: 206 AVDLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPWIFSALKAEL-TGQPLPSPP 264 Query: 252 -LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQL 310 AE + +++ YG + G RIARKH+ WY ++ R FN E +Q Sbjct: 265 DRAERVVAIKKQFEKIYHHYGDSLGIRIARKHLGWYAASLELGEEDRAVFNRFEHPEQQR 324 Query: 311 EAL 313 + L Sbjct: 325 QWL 327 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 156/326 (47%), Positives = 209/326 (64%), Gaps = 7/326 (2%) Query: 1 MRIGQYQLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 M++G + L + + APMAG++DRP R + +GA VSEM++S+ ++W SDKSR R+ Sbjct: 1 MQLGPHHLPDPPVFLAPMAGVSDRPLRLIARRLGASAAVSEMVTSDTRLWGSDKSRHRLD 60 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 H EP R VQ+ G++P+ +A+AAR NV GA +ID+N+GCPAKKV K AGSALL P+ Sbjct: 61 HRQEPRPRIVQLLGNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 V+ +LT +V +V+VPVTLK+R G E N E IA +A+DCGI LT+HGRTRA + G Sbjct: 121 RVRELLTALVESVEVPVTLKMRLGLDRERVNAETIAGIAQDCGIAMLTVHGRTRADAYRG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A+Y++I V + VSIPV+ANGD+ D AR L +GA LMIGR AQGRPW+ +I+ Sbjct: 181 TADYEAIARVVRAVSIPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPGQIRA 240 Query: 240 YLDTGELLPPLPLAEVK-RLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA----PND 294 L GE +P P + + L+ H+R LH YG +G RIARKH+ WYLQ P Sbjct: 241 SL-AGEPVPADPAWDARLALIEEHLRALHAQYGEMQGVRIARKHLGWYLQHMGLGEDPTR 299 Query: 295 QFRRTFNAIEDASEQLEALEAYFENF 320 R + A ASEQL L A Sbjct: 300 AARASLLAATTASEQLGRLRAILSGI 325 >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 137/319 (42%), Positives = 194/319 (60%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG +L+N++ +PMAG+TD PFR +C E G GL +EM++ ++ + ++ + Sbjct: 1 MKIGNLELKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKI 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +E VQI GS+P+ M AA I + +I+DINMGCPA KV + GSAL++ P + Sbjct: 61 EEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + +L VV PVTLKIR GW N EIA++AEDCGI AL IHGRTR + G+ Sbjct: 121 AEEVLRAVVKNSKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYTGK 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I +K+ +SIPVI NGD+ + +LD TG DA+MIGR AQG PWIF+ I HY Sbjct: 181 ADWDIIAEIKKNLSIPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQGNPWIFKRINHY 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 ++TGE+LP L E H++ + +G R RKH++WYL+ + + R Sbjct: 241 MNTGEILPEPTLNEKISTAIKHLKLAVEEHGEYVAVREMRKHIAWYLKGLRNSAKLRDEI 300 Query: 301 NAIEDASEQLEALEAYFEN 319 N IED E + LE Y E+ Sbjct: 301 NKIEDYQEVVSKLEYYMED 319 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 141/314 (44%), Positives = 188/314 (59%), Gaps = 2/314 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +R+ + L ++ APMAGITDRPFR L GAG+ VSEM++S V R R Sbjct: 40 LRLAEKHLTPPVLLAPMAGITDRPFRDLVMRFGAGMVVSEMVASQEMVQAKPGVRERAEL 99 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+AG + MA+AAR + GA++IDINMGCPAKKV +GSALL+ PD Sbjct: 100 SADVENTAVQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDH 159 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +++ VV AVD+PVTLK R GW N ++A+ A+D GIQ +TIHGRTR + G Sbjct: 160 ALTLIEAVVAAVDIPVTLKTRLGWDDSLLNAPDVARRAQDAGIQMVTIHGRTRCQFYKGR 219 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ +I AVK+ VS+PVIANGDIT P AR LD +GAD +M+GR AQGRPW+ +I H Sbjct: 220 ADWQAIGAVKEAVSVPVIANGDITGPGAARTALDQSGADGVMVGRGAQGRPWLLAQICHD 279 Query: 241 LDTGELLPPLPLAE-VKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 L G P +P + ++ H + + FYG G R+ARKH+ WY+ + RR Sbjct: 280 L-YGIAPPDIPTGSALIDMVRGHYQAMLAFYGTDLGLRVARKHLGWYMDDAGTPATLRRA 338 Query: 300 FNAIEDASEQLEAL 313 D E L L Sbjct: 339 VLTSRDTGEVLHLL 352 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 128/306 (41%), Positives = 192/306 (62%), Gaps = 1/306 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM-V 59 ++IG +L + +I APM+G+TD FR L GAGL VSEM++S + ES +S + + Sbjct: 2 IKIGNIELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMIASRAMIVESRQSLQKCSI 61 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D+ VQ+AG +P +A+AA++N + GA+IID+N GCPAKKV +GSAL++ Sbjct: 62 MQDDATSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEG 121 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I V AV +PVT+K+R GW + +N +A++AE GIQ +T+HGRTR ++G Sbjct: 122 LAAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQFYSG 181 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A+++ I+ VK+ V IPVIANGDIT+ KA+ L+ + AD +M+GR A G+PW+ +I H Sbjct: 182 NADWEFIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPWLISQIDH 241 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL TGE P + ++ H + + D+YG + G IARKH+ WY + +FR Sbjct: 242 YLKTGEEKPAPSIESQLDIVLEHYQAIVDYYGESAGVPIARKHMGWYSSGLPNSAEFRGA 301 Query: 300 FNAIED 305 N + D Sbjct: 302 VNLMND 307 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/296 (46%), Positives = 188/296 (63%), Gaps = 13/296 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--RLRM 58 +R+G ++RNR+ APM+G+TD PFR L + GAG V+EM++S V + +S RL+ Sbjct: 17 LRVGNVEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN 76 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 ID P I VQ+AG + MA+AA+I +GA I+DINMGCPAKKV +GSAL++ P Sbjct: 77 SGID-PHI--VQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDP 133 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 D S++ V AV VPVTLK+R GW N IA+ AE+ G+QA+TIHGRTR +N Sbjct: 134 DHALSLIEATVKAVRVPVTLKMRLGWDENSINAPLIARRAEEAGVQAITIHGRTRMQFYN 193 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A++D+IRAV+ +SIP+IANGD+ A +L +GADA+M+GR+ QGRPW + Sbjct: 194 GNADWDAIRAVRDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRPWHAGALA 253 Query: 239 HYLDTGELLPPLPLA-EVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN 293 D P A E+ + H + DFYGP G R ARKHV WYL+ AP+ Sbjct: 254 GAADE-------PAATEIAAIFVEHYAMMLDFYGPEIGLRHARKHVGWYLERFAPD 302 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/318 (43%), Positives = 196/318 (61%), Gaps = 3/318 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG ++NR+I+APMAGITDR +R L E G GL +EM+S ++ + K+ + + Sbjct: 2 LRIGNVTIKNRVISAPMAGITDRAYRILAKEAGCGLVCTEMISDQALLYGNPKTNILLDC 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E ++QI GS P+ MA AA I GA IIDINMGCP K+ + G+AL++ P++ Sbjct: 62 TGETPPISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKPEL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I+++VV +V VPVT+KIR GW N E+A LAE+ G +A+T+HGRTR+ ++G+ Sbjct: 122 AQKIISDVVQSVRVPVTVKIRKGWDESFPNAVEMALLAEEAGAKAVTVHGRTRSQFYSGK 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I++VK+ V+IPVI NGDI +P A +L +TG DA+MIGRA+ G PWIF H+ Sbjct: 182 ADWDIIKSVKKAVTIPVIGNGDIREPRDAVRMLMHTGCDAVMIGRASLGNPWIFSSTVHF 241 Query: 241 LDTGELLP-PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 LD GE LP P P + L H+ L + G R RKH +WY + ++ R Sbjct: 242 LDCGENLPAPSPRQRLSVAL-RHLELLIELKGEYIAIREMRKHAAWYTRGLREANRIREK 300 Query: 300 FNAIEDASEQLEALEAYF 317 N SE E L YF Sbjct: 301 INRAVSLSEIRELLN-YF 317 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/319 (44%), Positives = 202/319 (63%), Gaps = 4/319 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 R+G Y + N L+ APMAGITD PFR +C G GL V+EM++S +++ RM Sbjct: 9 FRLGTYMIDNPLVLAPMAGITDLPFRRICKRFGVGLMVTEMIASRAVDMGRERTE-RMAE 67 Query: 61 I-DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + D+ ++QIAGSDP+ + +AAR V GA +DINMGCP KK+ +++AGSA+L+ Sbjct: 68 LGDDEHPVSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDEA 127 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +V +L VV AVDVPVTLKIRTGW + +N + IA++AED GIQ LT+HGRTRA +F+G Sbjct: 128 LVARVLAAVVAAVDVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRAQMFHG 187 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A ++ I K VSIPVI NGDI D AR ++ + D +M+GRA QG PW+ E+ H Sbjct: 188 HACWEDIGLAKAAVSIPVIGNGDIVDAESAREMIRVSNCDGVMVGRAVQGNPWVLGEV-H 246 Query: 240 YLDTGELLPPLPLAEVKRLLC-AHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 G +PP P A + L+ H+R L + +G ++ARKHV WY + + +FR+ Sbjct: 247 AAIAGLPIPPKPTAAERWLIVDEHMRHLVEHHGIRTASKLARKHVIWYSKGLHGSAEFRQ 306 Query: 299 TFNAIEDASEQLEALEAYF 317 +F + D + ++ AYF Sbjct: 307 SFQVMTDWQQMMDFAAAYF 325 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 138/306 (45%), Positives = 187/306 (61%), Gaps = 18/306 (5%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG +RNR+I APM+G+TD PFR L GAGL V+EM++S V ++ +S R+ Sbjct: 20 IGPVPIRNRVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQDTAESWARL---K 76 Query: 63 EPGIR--TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 G++ VQ+AG + MA+AA+I ++GA IIDINMGCPAKKV +GSAL++ PD Sbjct: 77 SAGLKPHMVQLAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDH 136 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ V AVDVPVTLK+R GW N IA+ AE+ GIQ +TIHGRTR + G Sbjct: 137 ALGLIEATVKAVDVPVTLKMRLGWDENSINAPHIARRAEEAGIQLVTIHGRTRMQFYEGR 196 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+IRAV+ +SIP++ANGD+ P A +L +GADA+M+GR QGRPW + + Sbjct: 197 ADWDAIRAVRDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWHAGVLAGH 256 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 + E+ + H R + DFYG A G R ARKH+ WYL +AP T Sbjct: 257 REPDR-------GEIADIALEHYRMMLDFYGEAVGIRHARKHLGWYLDRYAP------TI 303 Query: 301 NAIEDA 306 N E A Sbjct: 304 NGAEKA 309 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/320 (42%), Positives = 190/320 (59%), Gaps = 6/320 (1%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE 63 G + +I APM+G+TD PFR L EMG G+ VSEM++S V E +K+ LRM Sbjct: 35 GGVTIETPVILAPMSGVTDLPFRMLAREMGTGMVVSEMIASWAMVRE-NKTTLRMAEPAG 93 Query: 64 PGI----RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVN-RKLAGSALLQYP 118 P +Q+AG DP+ MA+AARI ++ GA++IDIN GCP KKV + AGSAL++ Sbjct: 94 PPSPGSPNALQLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDE 153 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 IL V AV VPVTLK+R GW + N +A++AE GI+ +T+HGRTR + Sbjct: 154 VTAAKILEATVKAVSVPVTLKMRMGWDHQSLNAPALAKIAEASGIRMITVHGRTRQQFYE 213 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G+A++ + VKQ S+PVI NGDI +A +GAD +M+GR GRPW R++ Sbjct: 214 GKADWAFVARVKQATSLPVIVNGDIQTVEQAAEARAISGADGVMVGRGCYGRPWFPRQVA 273 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL G +P PL+E K++L H + +G G R+ARKHVSWY + FR Sbjct: 274 AYLRDGVHIPEPPLSERKQILLNHYDAMLRCFGTDAGMRLARKHVSWYTTGLHGSAAFRA 333 Query: 299 TFNAIEDASEQLEALEAYFE 318 T N + D S+ L ++ +F+ Sbjct: 334 TVNRLADPSQVLALIDTFFD 353 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 130/290 (44%), Positives = 183/290 (63%), Gaps = 12/290 (4%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--RLRMVH 60 I +RNR++ APM+G+TD PFR L + GAGL V+EM++S V+ + +S RL+ Sbjct: 12 IASVAIRNRVVLAPMSGVTDLPFRQLAFRHGAGLVVTEMVASRELVFNAAESWSRLKGAG 71 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+AG DP MA+AA+I +GA IIDINMGCPAKKV AGSAL++ P++ Sbjct: 72 LTP---HMVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEI 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +++ V AV +PVT+K+R GW + N ++++ A+D G+QA+T+HGRTR + G Sbjct: 129 ALAMIEATVKAVSIPVTVKMRLGWDSDSINAPDLSRRAQDAGVQAITVHGRTRMQFYEGR 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+I AV+ + IP+IANGDI A+ +L +GADA+M+GRA QGRPW H Sbjct: 189 ADWDAIAAVRDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPW------HA 242 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEH 290 PP E+ + AH R + D YG G R ARKHV WYL+ H Sbjct: 243 GVLAGHAPP-SAEEIPAIAVAHYRAMLDHYGAHVGVRHARKHVGWYLERH 291 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 180/304 (59%), Gaps = 2/304 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG L N LI PMAG+TD PFR LC E GAGL EM+S+ +++ +K+ ++ Sbjct: 9 LQIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYK-NKNTESLLS 67 Query: 61 IDE-PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 IDE ++Q+ GSDP+ MA A+ E I+DINMGCP K+ GSAL++ P Sbjct: 68 IDEREKPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPL 127 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I+ +V A+D PVT+KIR G+ EH N E+A +AE+ G A+ +HGRTR ++G Sbjct: 128 LAGQIIESIVKAIDKPVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYYSG 187 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +A++D IR VK+ VSIPVI NGD+ + + TG D MI R AQG PWIF +I H Sbjct: 188 KADWDIIRQVKEAVSIPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQGNPWIFSQILH 247 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 Y +TGE EV+R++ H R + +F G G RKH +WY + + + R Sbjct: 248 YFETGEHQEKPSFEEVRRMILRHARMMIEFKGEYTGIHEMRKHTAWYTAGYPHSSRLRAA 307 Query: 300 FNAI 303 N + Sbjct: 308 VNTV 311 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 243 bits (619), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 133/321 (41%), Positives = 192/321 (59%), Gaps = 8/321 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV---WESDKSRLR 57 +I ++ N ++ APMAG D FRT+C E GAGL +EM+S+ V WE+ L Sbjct: 3 FKIADIEIENNVVLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWET-MEMLY 61 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKL-AGSALL 115 M + ++P +QI G+D A + E+ +DINMGCP KV +KL AG+ALL Sbjct: 62 MENSEKP--LGIQIFGTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALL 119 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 + + + ILT VV AV PVT+K+R GW ++ N E+A+ ED G+ A+ IHGRTR Sbjct: 120 KDVNRIHEILTAVVKAVHKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQ 179 Query: 176 LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 ++ G+A +D IR V++ V I VI NGD+ P A+A++++TG DA+M+GRA++G PWIFR Sbjct: 180 MYTGKANWDIIRDVRKAVDIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFR 239 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQ 295 +I YL+TGEL+PP E +L H+R L + R H S+YLQ+ + + Sbjct: 240 QIAKYLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKE 299 Query: 296 FRRTFNAIEDASEQLEALEAY 316 FR N +E E + LE Y Sbjct: 300 FRMKLNQLEHEQEIFKILEEY 320 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 131/288 (45%), Positives = 180/288 (62%), Gaps = 12/288 (4%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 +RNR++ APM+G+TD PFR L + GAGL V+EM++S V ++ +S R+ G Sbjct: 2 SVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRL---KAAGF 58 Query: 67 R--TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 R VQ+AG + MA+AA+I + GA IIDINMGCPAKKV +GSAL++ PD + Sbjct: 59 RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGL 118 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + V AVD+PVTLK+R GW N +IA+ AE GIQ +TIHGRTR + G A++D Sbjct: 119 IEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQFYEGRADWD 178 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 +IRAV++ +S+P+IANGD+ A+ +L +GADA+MIGR QGRPW + G Sbjct: 179 AIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPW-----HAGVLAG 233 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP 292 P ++ + H R + DFYG A R ARKH+ WYL+ AP Sbjct: 234 AAEPRRE--DIADIAVEHYRMMLDFYGEAVAIRHARKHLGWYLERFAP 279 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 180/300 (60%), Gaps = 5/300 (1%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI-RTVQ 70 ++ APMAGI+D P+R+LC G+ T++EM+ + PQ +S+LR+ D+ + VQ Sbjct: 14 VLLAPMAGISDLPYRSLCQRFGSHYTIAEMVDARPQFLAMPESQLRLQFDDDARFPKIVQ 73 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + G DP MA+ A++ G +IDINMGCPAKKV ++ AGSALL V+ IL +V Sbjct: 74 LVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDLPQVEKILAQVTR 133 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 V +PVTLK R G+ + E +A++AE+ G+ ALT+HGRTRA FNG A YD I VK Sbjct: 134 VVSIPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTRAQRFNGTAHYDEIGRVK 193 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 + S+P+I NGDIT +A+ ++ G D +MIGRAA G PW+ ++ LD LP + Sbjct: 194 AQTSLPIIVNGDITTTAQAQDLIQQFGFDGVMIGRAACGNPWLLAHMRCALDCDFALPAI 253 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQL 310 + ++ H+ LH Y +G IARKH+ WYL D +R+ N D + QL Sbjct: 254 ---SRRAVISEHISALHQLY-QRQGLLIARKHLHWYLAPMPRYDFWRQEINTATDLAAQL 309 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 236 bits (601), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 131/324 (40%), Positives = 192/324 (59%), Gaps = 9/324 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++G Y + N+LI APMAG+++ PFR + ++GAG+ +EM+S +++ K+ L+M++ Sbjct: 3 FKLGNYVVENKLILAPMAGVSNHPFRLMARQLGAGVVFAEMVSDKAIFFQNPKT-LQMLY 61 Query: 61 I---DEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVN-RKLAGSALL 115 + ++P + QI GSD + M +AA I+ S IDINMGCP KV AG++L+ Sbjct: 62 MTVEEKPAAQ--QIFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLM 119 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 + P + I+ + V PVT+KIR+GW E N E+A++ E G +T+H RTRA Sbjct: 120 KDPQKIYDIVKAIKEKVSKPVTVKIRSGWDSESVNAVEVAKMIEKAGASLITVHARTRAQ 179 Query: 176 LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 ++GE + D I+AVK+ VSIPVI NG+I D A+ +L+YTG DA+MIGRA+ G PWIFR Sbjct: 180 GYSGEPDLDVIKAVKEAVSIPVIGNGNIVDGKSAKHMLEYTGCDAVMIGRASLGNPWIFR 239 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQ 295 EI YL+ GE P EVK L+ H +L G R H WYL+ Q Sbjct: 240 EINAYLN-GEETPVRTYEEVKTLMIRHFDDLAKLKGEHTACLEMRSHGPWYLKGLPKASQ 298 Query: 296 FRRTFNAIEDASEQLEALEAYFEN 319 R + +E +E LE YF++ Sbjct: 299 VRAKLARTTNRAEYMENLEMYFDD 322 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 184/310 (59%), Gaps = 3/310 (0%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT-VQ 70 ++ APMAG+TD PFR +C E GA TVSEM+S+ ++++ K+ M+ ID T +Q Sbjct: 11 VVLAPMAGVTDLPFRVICRENGADYTVSEMVSAKALLYKNQKT-FAMLTIDPKEHPTAIQ 69 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + GS P E+A A +I GA +ID+NMGCP K+ GSAL++ PD V +IL +V+ Sbjct: 70 LFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAILAALVD 129 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 AV +PVT+K R GW H+N IAQ+AE G+ A+ +HGRTRA + G+A++D IRAVK Sbjct: 130 AVSIPVTVKFRAGWDEAHKNAAVIAQMAEKAGVSAVCVHGRTRAQFYQGKADWDIIRAVK 189 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 + V IPV+ NGDI A + + TG D +MI R A+G PWIFR+++ L G+ + P+ Sbjct: 190 ESVGIPVLGNGDIFHAEDALRMKEETGCDGVMIARGAEGNPWIFRDVKALLH-GKAISPV 248 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQL 310 + E ++ H+ +L F G G R R H + YL + +R T N + L Sbjct: 249 SVQERFAMIRRHLHDLILFKGERVGVREMRHHGAMYLTGLPHSAYYRNTINQAQTEEALL 308 Query: 311 EALEAYFENF 320 L Y E Sbjct: 309 AVLGEYEEKL 318 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 233 bits (595), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 124/288 (43%), Positives = 175/288 (60%), Gaps = 3/288 (1%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID-EPGIRTVQIAG 73 APMAG+TD PFR +C E+GA TVSEM+S+ ++++ K+ M+ +D +Q+ G Sbjct: 22 APMAGVTDLPFRVICRELGADYTVSEMVSAKALLFKNPKT-FAMLEVDPREHPVAIQLFG 80 Query: 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD 133 S P+E+ A+I E GA IID NMGCP K+ GSAL++ P+ + L +V+AVD Sbjct: 81 SVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYACLAALVDAVD 140 Query: 134 VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 PVT+K R GW +HRN EIA+LAE G+ A+ +HGRTR ++G+A++D IR VK+ V Sbjct: 141 RPVTVKFRAGWDEDHRNAVEIARLAEKAGVAAVAVHGRTRGQFYSGKADWDIIRQVKEAV 200 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLA 253 SIPV+ NGD+ A +L T D +MI R AQG PWIFRE+Q L G+ +PP+ L Sbjct: 201 SIPVLGNGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIFREVQAVL-AGKTIPPVTLE 259 Query: 254 EVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 E ++ H+R+L F G R R H + Y + +R N Sbjct: 260 ERFAMVRRHLRDLTAFKGEKVAIREMRHHGACYFTGLPHSAHYRNAIN 307 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 124/317 (39%), Positives = 190/317 (59%), Gaps = 4/317 (1%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR--LRMV 59 +IG ++ + I APMAG++D +R L E GA L +EM+S+ ++++++ LR+ Sbjct: 7 QIGAVKIDGQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRIE 66 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 ++ P ++QI GS+P+ +A A++ +GA I+DINMGCP KKV GSAL++ PD Sbjct: 67 DVERP--VSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPD 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + + V AVDVPVT+K+R GW + N + A+ E G+ A+ +HGRT+ +++G Sbjct: 125 LAARVAEAAVEAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ I+AVK+ VS+PV+ NGDI +P A+ +LD TG DA+M+GR AQG PWIF I H Sbjct: 185 HADWSYIKAVKEAVSVPVLGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPWIFGRIHH 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL TGE+LP E +L H L + G + R H WY++ + +R Sbjct: 245 YLATGEVLPGPTDIERLDMLLKHFDLLCQYKGEGMAVKEIRTHAGWYMKGLPESAYWRNR 304 Query: 300 FNAIEDASEQLEALEAY 316 N I+ + LE+Y Sbjct: 305 VNTIQTVTSFHNELESY 321 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/319 (39%), Positives = 186/319 (58%), Gaps = 5/319 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG QL+NR++ APMAG+ + FR E GAGL +EM+S ++ + ++ + M++ Sbjct: 2 FKIGDIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNART-MGMLY 60 Query: 61 IDE-PGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 IDE ++QI G + + +AA+ ++ + A IIDINMGCP K+ + AG+ L P Sbjct: 61 IDEREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDP 120 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 D + +++ VV+AV+ PVT+K+R GW +H + AQ E G +A+ +HGRTR ++ Sbjct: 121 DKIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYE 180 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A +D I+ VKQ VSIPVI NGD+ P A+ +LD TG D +MIGRAA G PW+ Sbjct: 181 GTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMIYRTV 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCA-HVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 YL+TG+L P K +C H+ L D G R RKH +WYL+ N R Sbjct: 241 QYLETGKLKEE-PQVREKMAVCKLHLDRLIDLKGENVAVREMRKHAAWYLKGVKGNANVR 299 Query: 298 RTFNAIEDASEQLEALEAY 316 N E E ++ L+A+ Sbjct: 300 NEINHCETREEFVQLLDAF 318 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 115/316 (36%), Positives = 178/316 (56%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG + L+ PMAG+TD PFR LC E GA L +EM+S+ + + + + + + Sbjct: 5 IGNVNINGNLVLGPMAGVTDLPFRLLCKEQGADLIYTEMVSAKGIYYNNKNTEVLLEVEE 64 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 + +Q+ G DP M++ A+ +DINMGCP KV GSAL+ P+ + Sbjct: 65 KERPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPERIG 124 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 I++ + A+ PVT+KIR G+ ++ N E+A++ E G A+ +HGRTR ++GEA+ Sbjct: 125 EIVSAISKAIKKPVTVKIRKGFTKDNINAVEVAKVIEQSGGAAIAVHGRTREQYYSGEAD 184 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 +D I+AVK+ VSIPVI NGD+ P + ++ YTG DA+MI R +G PW F + +HYL+ Sbjct: 185 WDIIKAVKEAVSIPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRGNPWFFSQAKHYLN 244 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 TGE+L + EV ++ H R + G RKHV+WY + + + R N Sbjct: 245 TGEILAKPSVPEVIEMILRHGRLAIEVKGEFTAMHEMRKHVAWYTMGYPKSAKLRNQVNE 304 Query: 303 IEDASEQLEALEAYFE 318 IE + + ++ Y E Sbjct: 305 IETYEDLIVLMKKYEE 320 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/322 (39%), Positives = 182/322 (56%), Gaps = 8/322 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR--LRM 58 M+IG L+N++I AP+AG+TD FR L EMG L +EM+S+ V +++ R Sbjct: 1 MQIGSLALQNKVILAPLAGVTDSSFRILAREMGCALVFTEMISAKGAVCAPEQTLKIARF 60 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 + P +Q+ GSDP+ A A + ++DINMGCP KKV K G AL++ P Sbjct: 61 TAQERP--IGIQLFGSDPEIFARATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRDP 118 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 D +I V +A +PVT+K+R GW N E+A ++ G A+T+HGRTRA ++ Sbjct: 119 DKAYAITKAVCDAATMPVTVKMRKGWDDSEVNAVEVALAVQEAGAAAVTVHGRTRAQGYS 178 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A++ I VK+ + +PV+ NGDI +P A+ +L TG DA+M+ R G W+ R Sbjct: 179 GRADWSVIARVKEALRVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVLGNLWLIRRTV 238 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 HYL+TGELLP +AE RL C H++ + D G G R RKH++WYL+ Q R Sbjct: 239 HYLETGELLPEPEMAERVRLACRHLKMVVDEKGEYMGVREMRKHMAWYLKGMRGAAQVR- 297 Query: 299 TFNAIEDASEQLEALEAYFENF 320 N I A + E + A EN Sbjct: 298 --NEIMRAKTK-EEMTAILENL 316 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 125/316 (39%), Positives = 174/316 (55%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG ++N +I APMAGI++ PFR + E G L +EM+S+N V +KS+ M Sbjct: 4 IGSLIIKNNVILAPMAGISNLPFRMMAREAGCALAFTEMISANGLVRGIEKSQQYMKSCI 63 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 + VQI G+DP MADA RI + GA +ID+NMGCP KKV + AG+ALL+ P +V Sbjct: 64 DDKPLGVQIFGNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVS 123 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 IL V A P+T+KIR+GW + N +IA++AE GI A+ +H RT F G A+ Sbjct: 124 QILESVRKATRKPLTVKIRSGWNLQSINAVQIARIAEQQGIDAVFVHARTAVQGFAGSAD 183 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 + I +K V I VI NGD+ A ++ TG D +MIGR A G PWIF E +Y Sbjct: 184 WRIIEEIKNSVGIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRGALGNPWIFNEALNYQS 243 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 T + L E K ++ H+ F G + + RKH+ WY + FR Sbjct: 244 TVQTHSEPVLNERKEMILRHLERETIFLGQKEAVKRFRKHLLWYTKGIRGGASFRSRVTT 303 Query: 303 IEDASEQLEALEAYFE 318 I D + L +EA+F+ Sbjct: 304 ISDQNLLLREIEAFFD 319 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 123/325 (37%), Positives = 187/325 (57%), Gaps = 8/325 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG +++ +L+ PMAG+++ PFR + E GA L +EM+S ++K M+ Sbjct: 1 MKIGNVEIKGKLVQGPMAGVSNPPFRLISKEKGADLVCAEMVSVEGMT-HNNKKTFSMLA 59 Query: 61 IDEP-GIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVN-RKLAGSALLQY 117 +++ ++QI G+D + A + I+ IID+N+GCPA KV R +GS+LL+ Sbjct: 60 VEKKEHPMSMQIFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKT 119 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 P+++ I+ VV PVT KIR GW E N E+++L E G +T+HGRTR+ + Sbjct: 120 PELIYDIVKAVVENTSKPVTAKIRLGWDKESVNAVEVSKLIEKAGASGITVHGRTRSEFY 179 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 +G A+++ I+ VK+ V+IPVI NGD+ D A+A+L+ TG D +MI R QG PWIFREI Sbjct: 180 SGHADWEKIKEVKEAVNIPVIGNGDVIDGPSAKAMLELTGCDGVMISRGCQGNPWIFREI 239 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDF-YGPAKGYRIARKHVSWY---LQEHAPN 293 H+L+TGE L AE K + H + L D+ R RKH++WY L + Sbjct: 240 AHFLETGEELDKPSFAEWKETVLKHAKMLIDYKQDEGSAIREFRKHLTWYFAALPKTEIL 299 Query: 294 DQFRRTFNAIEDASEQLEALEAYFE 318 +Q + N I S+ +E Y E Sbjct: 300 NQLKEEANKINTFSDLENIIEKYKE 324 >UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonellaceae RepID=C9KMX2_9FIRM Length = 322 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 186/323 (57%), Gaps = 7/323 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG++ + + APMAG+TD +R + ++MG L +EM+SS + ++++ + Sbjct: 1 MKIGEFSFKTPVFLAPMAGVTDTAYRIIAHDMGCPLCFAEMVSSQGIHFRNERTLAMLQS 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 E +QI + P+ A+AA G A I+D NMGCPA K+ + GSAL++ P+ Sbjct: 61 EKEERPLAMQIFANTPEMAAEAAAFVEALGTADILDFNMGCPAPKIVKNGEGSALMRDPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +IL+ + AV +PVT+K+R GW N E+A+LAE+ G+ A+ +HGRTR + G Sbjct: 121 RAFAILSAIRKAVKMPVTVKMRKGWDAASVNVVEMAKLAEEAGVDAIAVHGRTREQFYTG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDI---TDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 A+++ I VK+ V IPVIANGD+ D K RAV TG D +MIGRAAQG PWIFR+ Sbjct: 181 RADWEIIGEVKRAVKIPVIANGDVRTFDDLDKIRAV---TGCDGVMIGRAAQGNPWIFRQ 237 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 HYL+TGE LP + E ++ H+ L + G G R RKH +WY + Sbjct: 238 FTHYLETGERLPGPTMKERAAVILRHLDLLLKYKGDYVGPREMRKHATWYTRGIVHGAIL 297 Query: 297 RRTFNAIEDASEQLEALEAYFEN 319 R FN + +E LE YFE Sbjct: 298 RDRFNKAVTREDFVEILEEYFEG 320 >UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=Rhodobacterales RepID=A3VWV8_9RHOB Length = 339 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/322 (41%), Positives = 180/322 (55%), Gaps = 14/322 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I Q+ + APMAGITD PFRT+ GAGL VSEM++S V +R + Sbjct: 2 LKIADRQIATPVFLAPMAGITDLPFRTVVAGFGAGLVVSEMVASQEMVQAKPSARGKA-- 59 Query: 61 IDEPGI----RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKV----NRKLAGS 112 E G +VQ+AG DP MA+AAR+ + GA+IIDINMGCPAKKV +GS Sbjct: 60 --ELGFGIENTSVQLAGCDPHWMAEAARVVADHGARIIDINMGCPAKKVVSAAGAGASGS 117 Query: 113 ALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT 172 AL++ D ++ VV AVDVPVTLK R GW N E+A+ AE G+ +T+HGRT Sbjct: 118 ALMRDLDHALRLIEAVVGAVDVPVTLKTRLGWDEGCSNAAELAKRAEAAGVAMITVHGRT 177 Query: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 R + G A++ I + Q V+IPVIANGDI A + + A +MIGR A+GRPW Sbjct: 178 RCQFYRGAADWAMISDIAQAVNIPVIANGDIVGVASACRAMAQSNAAGVMIGRGARGRPW 237 Query: 233 IFREIQHYLDTGELLPPLPLAEV-KRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA 291 + E+ + G P +P V L+ H + FYG G R+ARKH+ WY++ Sbjct: 238 LLAEVAAAMGHGT-APEVPRGAVLADLVAGHYEAMLGFYGRDLGLRVARKHLGWYMEAAG 296 Query: 292 PNDQFRRTFNAIEDASEQLEAL 313 + + RR + AS L L Sbjct: 297 SDPEMRRAVLTADQASVVLGLL 318 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 125/320 (39%), Positives = 180/320 (56%), Gaps = 6/320 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MR+G Y+L + L +P+AG T+ PFR E+G V+ + + + E + + L++V Sbjct: 1 MRLGPYELSSNLFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLLERNPAALKLVA 60 Query: 61 I---DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 D P ++Q+ GS P EM DAARI + GAQ +DINMGCP +KV R GSA++ Sbjct: 61 SSAEDRP--MSIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTE 118 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 + +++ ++ AV +PVT K+R GW E+ ++A++ ED G+ A+ +HGRTRA F Sbjct: 119 LNQTAALVRGMIEAVKIPVTAKMRLGWDDENLTAPDLARVLEDAGVAAVFVHGRTRAQGF 178 Query: 178 NGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 +G I AV Q V IPVI NGD+T P ARA+++ TG + IGR A PWIFR Sbjct: 179 SGTVNLAGIAAVVQAVKRIPVIGNGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWIFRR 238 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 H L +GEL P E R++ H +FYG KG R+ RK WY + P F Sbjct: 239 THHLLTSGELWPEPGFDERVRVMRRHFERYCEFYGEEKGPRLFRKVAPWYAKRFGPAKPF 298 Query: 297 RRTFNAIEDASEQLEALEAY 316 +R I+ ++ AL Y Sbjct: 299 KRRIITIDSRADFDAALAEY 318 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 183/318 (57%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M++G+ L N +I APMAG+TD P+R + + GL EM+S+ V+ + K+ ++H Sbjct: 4 MKLGKLTLDNCIIVAPMAGVTDYPYRRILAKFSPGLICGEMVSAKGMVYGNKKTEEMVIH 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ + QI GSDPK MADAA G ID+NMGCPA K+ + GSALL+ P + Sbjct: 64 HNQGVHYSQQIFGSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I+ E+VN+V++PVT+KIR G+ + + E+A ++ GI+AL +HGRT ++G+ Sbjct: 124 AQEIVREIVNSVNLPVTVKIRKGFDRKSSDPLELALRLQEVGIKALAVHGRTCEQQYSGK 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+++ + +K + IPVI NGDI A + L+ T D +M+GR G PW+ + + Sbjct: 184 ADWEVVAKLKNYLDIPVIGNGDIFSSEDAVSALEMTACDGIMLGRGLMGNPWLIEQTKGM 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L E + + E+K + +H +YG +KG RKH+SWYL+ + + Sbjct: 244 LIKDEKIESPEIHEIKNEMKSHFENAIKYYGESKGIAEMRKHISWYLKSLPGSTSIKDEV 303 Query: 301 NAIEDASEQLEALEAYFE 318 + D ++ +L YF+ Sbjct: 304 MRLTDVNQIWFSLNEYFQ 321 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/312 (39%), Positives = 183/312 (58%), Gaps = 9/312 (2%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 ++ ++ APMAG TD+ FR LC GA +TV+EM+SS V S K++ + +E IR Sbjct: 4 IKGKIFLAPMAGFTDKVFRRLCSRFGADVTVTEMISSKALVLGSAKTKDLISFSEEEKIR 63 Query: 68 TVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQI G+DP+ MA + +I E IDINMGCP K+ R G AL++ P + I+ Sbjct: 64 GVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSLAAKIVE 123 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 EV PV++KIR G+ E+ N E A + ++ G +T+HGRTRA L++G+A+++ I Sbjct: 124 EVAKVSRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSGKADWEII 183 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG-- 244 R VK+K+ IPVIANGDI D A+ + T AD++MIGRAA G PW+F +I+ + G Sbjct: 184 RKVKEKLKIPVIANGDIVDFESAKKAYEVTRADSIMIGRAALGNPWVFLQIKEGFEKGYV 243 Query: 245 --ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 ++LP + + R+ +L G ARKH+S++++ + R N Sbjct: 244 ETKVLPHMKI----RVAIEFFTQLCSEKGDKMAVLEARKHLSFFVKGIENAAKIRDKINR 299 Query: 303 IEDASEQLEALE 314 I +A+E LE L+ Sbjct: 300 INNATELLEFLK 311 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 128/321 (39%), Positives = 182/321 (56%), Gaps = 2/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG + + ++AAPMAG+TD+PFRT+ E L +EM+S + ++++ + ++ Sbjct: 9 LRIGPWSVFPPVVAAPMAGVTDKPFRTVLKEHRCPLVYTEMISDKALTY-ANRNTMEILD 67 Query: 61 ID-EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 I E VQI GS+P MA+AARI +GA IIDINMGCPA K+ R G+ LL+ PD Sbjct: 68 ITGEARPIAVQIFGSEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPD 127 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I VV AV VPVT+K+R GW+ E+A E G+QALT+HGRTR ++G Sbjct: 128 LAVDIAEAVVRAVQVPVTVKMRIGWSSGRIVAPELAPRLEAVGVQALTVHGRTREMFYSG 187 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +A++ I ++VSIPVI NGD+ +P A +L TG A+MIGR G PWIF + H Sbjct: 188 QADWSVIAETVRQVSIPVIGNGDVWEPDDALRMLVETGCAAVMIGRGCMGNPWIFSRLVH 247 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + +TGE+ PP E H+ + G +G R R H+SWYL+ + R Sbjct: 248 WAETGEMPPPPSPEERINQALLHLEHIVALKGEERGVREMRGHLSWYLKGIRGASRLRAE 307 Query: 300 FNAIEDASEQLEALEAYFENF 320 N D + L + E Sbjct: 308 INQAPDRESVVRLLTEHREQV 328 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 118/320 (36%), Positives = 182/320 (56%), Gaps = 3/320 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG Q+ N ++ APMAG+ + FR E GAGL +EM+S ++ + K+ + M++ Sbjct: 20 FKIGNVQINNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILFNNPKT-MGMLY 78 Query: 61 IDE-PGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 IDE ++QI G + + + AA+ ++ + A IIDINMGCP K+ + AG+ L P Sbjct: 79 IDEREKPLSLQIFGGEKETLVQAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDP 138 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + + ++ VV+AV+ PVT+K+R GW H E AQ E G QA+ +HGRTR ++ Sbjct: 139 NKIYDMVAAVVDAVEKPVTVKMRIGWDENHIYAVENAQAVERAGGQAVAVHGRTRVQMYE 198 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G+A+++ I+ VK+ V IPVI NGD+ P A+ +L+ TG D +MIGRAA G PW+ Sbjct: 199 GKADWNVIKQVKEAVRIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGRAALGNPWMIYRTV 258 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL+TGEL+P + E + H+ L + RKH +WYL+ N + R Sbjct: 259 RYLETGELIPEPSVREKIEVCILHLDRLIALKNEYIAVKEMRKHAAWYLKGIRGNAKVRN 318 Query: 299 TFNAIEDASEQLEALEAYFE 318 N + E + L ++ E Sbjct: 319 AINECQTRDELVTLLMSFVE 338 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/288 (44%), Positives = 176/288 (61%), Gaps = 21/288 (7%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR---- 67 ++ APMAG+TD PFR L ++ G L+ +EM++S E + R R V +P + Sbjct: 14 IMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASR----ELLRERARGV---DPRLGGGAE 66 Query: 68 -------TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQ+AG DP MA+AAR +GA++IDINMGCP +KV L GSAL++ + Sbjct: 67 AGRAGPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPL 126 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 IL VV AV +PV+LK+R GW RN E+A+LAE GI LT+HGRTRA +++G Sbjct: 127 AARILEAVVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGR 186 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI--FREIQ 238 A++ +I VK+ VS+PVIANGD+T+ +AR +L TGAD +MIGRAA G PW+ Sbjct: 187 ADWPAIGLVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAPWLPGAIARA 246 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWY 286 T E PP LAE ++ AH+ L +G +G + +RKH+ WY Sbjct: 247 IAAGTRETPPPA-LAERAAVMAAHLEGLLACHGLERGLKTSRKHMGWY 293 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 176/321 (54%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG L R I AP+AGITD PFR L G L SEM+SS+ ++S+K+ + Sbjct: 1 MRIGPVFLAGRTILAPLAGITDAPFRRLAKAAGCALVYSEMVSSHGLFYQSEKTGAMLRT 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E VQI G P M AA + SGA +IDIN GC KK+ + AG+AL++ + Sbjct: 61 TPEEAPFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ V +AV +P+T+K+R+GW P+ + +A++AE G+ A+ +H RT F G Sbjct: 121 AAEVIQAVRDAVSIPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRTATQGFGGT 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I A+KQ+ +PVI NGDI P AR +LD TG DA+M+GRAA G PWIF++I Sbjct: 181 ADWSLIAALKQRTGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAPWIFKQINAC 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L ++ P L ++ ++ + YG R+ R + W+ + FR + Sbjct: 241 LAGKPVVEP-SLEHRFEVMSEYINAMVAHYGEDLACRVMRSRLGWFTRAMPHGTLFRESI 299 Query: 301 NAIEDASEQLEALEAYFENFA 321 IE + L A+ Y E A Sbjct: 300 RRIETKDQVLAAVSDYRERLA 320 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/329 (39%), Positives = 189/329 (57%), Gaps = 14/329 (4%) Query: 1 MRIGQYQLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG L N L+ APM ++D PFR +C E GA L +E +SS + ++ KSR ++ Sbjct: 2 VKIGNITLGNFPLLLAPMEDVSDPPFRAVCKEKGADLMYTEFISSEGLIRDAIKSRRKLD 61 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQ-YP 118 D +QI G D + MA AA+I + ++DIN GCP KKV K AGS +L+ P Sbjct: 62 IFDYERPVGIQIFGGDEEPMAMAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKDIP 121 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +VK + VV A +PVT+K R GW + +N EE+A+ +D GIQALTIHGRTR ++ Sbjct: 122 KMVK-LTAAVVKATKLPVTVKTRLGWDDDTKNIEEVAERLQDVGIQALTIHGRTRTQMYK 180 Query: 179 GEAEYDSIRAVKQ--KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 G A++ I VK ++ IP+ NGDI P +A A + G D +MIGRAA G PWIF E Sbjct: 181 GHADWTLIGKVKNNPRIHIPIFGNGDICTPEQAIAAREKYGVDGVMIGRAAIGYPWIFNE 240 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 I+H++ TGE LPP + E + H++ + G G R+H + YL+ +F Sbjct: 241 IKHFMQTGEHLPPPSVLERVEVCKKHLQHSVQWKGDVVGILEMRRHYTNYLKGLPHIKEF 300 Query: 297 RR------TFNAIEDASEQLEALEAYFEN 319 R+ T A+ED L+A+ ++++ Sbjct: 301 RQQLVTCSTLAAVEDV---LDAIALHYKD 326 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/279 (44%), Positives = 168/279 (60%), Gaps = 7/279 (2%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR--TVQIA 72 AP++G+TD R + GA VSEM+++ S ++RLR + G+R VQ+A Sbjct: 33 APLSGVTDLHLRRIARRCGASAVVSEMVAAEDLARGSAEARLRA---EGEGVRPHVVQLA 89 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G DP+ MA+ AR+ +GA +ID+NMGCPAKKV AGSAL++ D +L V AV Sbjct: 90 GCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLLAAVREAV 149 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 VPVT+K+R GW RN ++A+ AE G+ A+T+HGRTR + G A++ +IRAV + Sbjct: 150 AVPVTVKMRLGWDDASRNAPDLARRAEALGLSAVTVHGRTRQQFYAGRADWAAIRAVVEA 209 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 VSIPV+ANGD+ +ARA L +GA A+MIGRAA GRPW+ + L G P L Sbjct: 210 VSIPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVAAGL-RGAPAPALTR 268 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA 291 A L H L YG A G R ARKH++ Y +HA Sbjct: 269 AAQADLAGEHYEGLLALYGVAMGVRHARKHLAAY-ADHA 306 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 186/322 (57%), Gaps = 9/322 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 RIG ++ +R + APMAG+T+ FRT+ E GAGL V EM+S ++ ++K+ L M+H Sbjct: 37 FRIGDVEIPHRTVLAPMAGVTNSAFRTIAKEFGAGLVVMEMISEKGLLYNNEKT-LHMLH 95 Query: 61 IDE-PGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 IDE ++Q+ G D + + AA I + A I+DINMGCP KV + AG+ L+ P Sbjct: 96 IDENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDP 155 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 D + I+ EV + +D+P+T+K+RTGWA E A AE G+ AL +HGRTR ++ Sbjct: 156 DKIYHIVKEVTSVLDIPLTVKMRTGWADSSLAVEN-ALAAESAGVSALAMHGRTREQMYT 214 Query: 179 GEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G +++++ V + ++ IP I NGD+ A+ +++ G DA+MIGRAA P++F +I Sbjct: 215 GTCDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMNNPYLFTQI 274 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 H+ +TG+ LP LP A+ + H++ L + G R R YL+ A + R Sbjct: 275 NHFFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAVREFRGLAPHYLRGTAGAAKVR 334 Query: 298 RTFNAIEDASEQLEALEAYFEN 319 A+ A E L +EA FE Sbjct: 335 ---GAVSRA-ETLAEVEAIFET 352 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 209 bits (533), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 111/320 (34%), Positives = 180/320 (56%), Gaps = 1/320 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I +L N L+ AP+AG+T+ P R + GA L SEM+SSN + K+ M Sbjct: 2 LKIASLKLDNPLVCAPLAGVTNLPLRLMAKRHGAALVCSEMISSNGLIRYQKKTMELMAS 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +E ++QI GSDP +AD+ARI E GA I+DIN GC KKV + AGSAL+ Sbjct: 62 KEEERPLSIQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADLPR 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + IL EV A+ +P T+K+R+GW + ++A+D G+ A+ +H RT F+G Sbjct: 122 AEKILKEVRKAISLPFTIKMRSGWDASGDEAMALGRIAQDAGVDAVALHPRTAKQGFSGH 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +++ I+ +KQ+++IPVI NGD+T P +++ TG D +MIGRA PWIFR+ Sbjct: 182 SDWSQIKRLKQELTIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRAVLYAPWIFRQALCL 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+ + + L + K++L ++ + D+ G G R+ R ++W+++ +FR Sbjct: 242 LEN-RPMEEIDLDDRKKVLFDYLDDTMDYLGEEHGCRVMRSRLAWFVKGLPNAAKFRGEI 300 Query: 301 NAIEDASEQLEALEAYFENF 320 I + + +E +F + Sbjct: 301 TRIASKEQARDLIEEFFRSI 320 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 169/299 (56%), Gaps = 1/299 (0%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 +L ++ APMAG+TD P+R LC EMG L+ +EM+S+ + + + +VH EPG+ Sbjct: 36 ELPGNILMAPMAGVTDLPYRILCKEMGLSLSFTEMVSAKAIYYGNQNTDSLLVHKGEPGL 95 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 + Q+ GSDP MA+ A +E ID+NMGCP KV R GSAL+ + + +L+ Sbjct: 96 VSAQLFGSDPALMAEMA-CRIEEDFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAEQVLS 154 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + A+ P+T+K R G+ + N E A++AE G+ ++TIHGRTR + G+A + I Sbjct: 155 TMAKALKKPLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTREQYYRGKANWQYI 214 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + K+ V IPV NGDI A A+L TG D + + R QG P++ R L G+ Sbjct: 215 KEAKEAVKIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGNPFLIRACVSLLSEGKK 274 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 LPP+ L+E K ++ H++ + + G RKH+SWY++ ++R+ N D Sbjct: 275 LPPVSLSERKEMMLRHLKLMVEIKGEHLALLEMRKHLSWYMEGLENAARWRQRVNTEND 333 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/321 (38%), Positives = 182/321 (56%), Gaps = 13/321 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG+ +L L+ APMA +T+ FR LC GA LT +EM++ + + ES KS ++ + Sbjct: 6 LKIGRTELSGNLLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLS 65 Query: 61 IDEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +E VQ+ G P ++ AA I E +IID+NMGCPA+ + GSALL P+ Sbjct: 66 SEEDRPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPE 125 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +V SI+ E+ ++D PV+ KIR E + E IA+L E G A+T+HGRT A +++G Sbjct: 126 LVYSIILELTESLDTPVSAKIRL-LGREEKTLE-IARLIEKAGASAVTVHGRTAAQMYSG 183 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + + IRAVK ++SIPVIANGD+ D A L+ TG D LMIGRAA G P+IF++I+H Sbjct: 184 NSNLEGIRAVKNELSIPVIANGDVKDEESAERTLELTGCDGLMIGRAAMGNPFIFKKIRH 243 Query: 240 YLDTGELL----PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQ 295 YL+TGE L P L + + + E H+ R H W+ + + Sbjct: 244 YLETGEKLGADKPFRQLEDFNSYI--SLLEEHNLLSSIN----LRMHAHWFTKGLRGSRH 297 Query: 296 FRRTFNAIEDASEQLEALEAY 316 R N +ED E + ++ Sbjct: 298 VREKINGLEDGKAITELIRSF 318 >UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=Alphaproteobacteria RepID=DUS_RHOCA Length = 324 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/277 (46%), Positives = 171/277 (61%), Gaps = 3/277 (1%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT-VQ 70 ++ APMAGITD PFR + GAGL VSEM++S + R + G+ T VQ Sbjct: 14 VLLAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKPSVRAKAQAELTAGLPTSVQ 73 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 +AG + MA+AA+I + GA+IIDINMGCPAKKV L+G+AL++ PD ++ VV Sbjct: 74 LAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRLIEAVVG 133 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 AVD+PVTLK+R GW + N EIA AE G++ + IHGRTR + G A++ +I AV+ Sbjct: 134 AVDLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIHGRTRMQFYTGAADWRAIAAVR 193 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 VS+PV+ANGDITD AR LD +GA +M+GR AQG PW +I L G+ P L Sbjct: 194 AAVSVPVVANGDITDAASARRALDQSGAAGVMVGRGAQGAPWRLAQIAAAL-FGKADPKL 252 Query: 251 PL-AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWY 286 P +E + H + FYG G RIARKH+ WY Sbjct: 253 PSGSEFSDFVSEHYEAILSFYGRDLGLRIARKHLGWY 289 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 164/288 (56%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IGQ ++ +I APM +TD FR LC GA + +E +SS+ + + KS+ ++ Sbjct: 45 MKIGQIEIEKPVILAPMEDVTDPSFRRLCKHYGADIVFTEFISSDGLIRHAVKSKRKLDV 104 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 D+ +QI G+ + M +AA++ +G IDIN GCPAKKV K AGS LL PD+ Sbjct: 105 FDDERPVAIQIFGNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDL 164 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ I VV AV +PVT K R GW + + + E CGIQAL+IHGRTRA ++ G Sbjct: 165 MEKITDAVVKAVRLPVTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGR 224 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I K+ +IP+I NGDI A+ + D TG D +MIGR A G P++FRE +H Sbjct: 225 ADWSWIARAKEVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPFLFREAKHL 284 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 + TGE LP E + H+ + G G R+H S YL+ Sbjct: 285 IQTGEHLPQATHRERVAVAIRHLEMSLERKGEKYGVLEMRRHYSTYLK 332 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/326 (38%), Positives = 182/326 (55%), Gaps = 14/326 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG + ++ APMA +TD PFRT+C G GLT++E + + + + D + + Sbjct: 7 MRIGSLTIDTPVLLAPMAAVTDLPFRTICERFGVGLTITEFLKAT-ALCDGDAEVVDKLT 65 Query: 61 IDEPGIR-TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 G+R VQI G + + + AA++ ++ GA +IDINMGCPAK+V G+AL+Q+P+ Sbjct: 66 ASLDGVRFGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAALMQWPE 125 Query: 120 VVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 + ++ VV +V VPVT+K R GW P +RN E A + G Q +T+HGRTR F Sbjct: 126 LSAELVRAVVASVPDSVPVTVKHRAGWNPLNRNAPEFACAMVEAGAQMVTVHGRTRTQGF 185 Query: 178 NGEAEYDSIRAVKQKVS--IPVIANGDIT---DPLKARAVLDYTGADALMIGRAAQGRPW 232 G + + IR V++ V +PV+ NGD+ D L+ R ++TG DA+MIGR A G PW Sbjct: 186 AGSVDLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMR---EHTGCDAVMIGRGALGNPW 242 Query: 233 IFREIQHYLDTGELLPPLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA 291 +FR + H L G P P +AE R+ C HV L+ G K RK +WY + Sbjct: 243 LFRSL-HALAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIHEVRKACAWYAKGLD 301 Query: 292 PNDQFRRTFNAIEDASEQLEALEAYF 317 D FR+ + E L A A+F Sbjct: 302 GADGFRQHVWKLRSPDEVLVAAAAFF 327 >UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostridiales RepID=Q14SX5_RUMFL Length = 332 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 170/300 (56%), Gaps = 4/300 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG + APMAG+ DR +R +C GA VSEM+S+ + K+ Sbjct: 5 IKIGNVTIPRTAALAPMAGVADRAYRLMCKRYGAAYVVSEMVSAKGICYSDRKTAELCTV 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +E VQ+ GS+P MA+A +I ++ IIDINMGCP KV AGSAL++ P + Sbjct: 65 TEEERPMAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPAL 124 Query: 121 VKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +I V A D PVT+KIR+GW+ + N E+A+ E G A+ +HGRTR ++G Sbjct: 125 AAAITEAAVKAAGDTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +++ + I+AVK+ VS+PVI NGDITD + TG D +MIGR + G P+IFREI Sbjct: 185 QSDMNVIKAVKEAVSVPVIGNGDITDAESCAEMYGRTGCDLVMIGRGSYGNPFIFREIAA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRI--ARKHVSWYLQEHAPNDQFR 297 ++ E PP L E R++ H+R + + + ARKH +WY+ + + +FR Sbjct: 245 RMEGSEYQPP-SLEEKMRVMLEHIRLIAGLSEKCEELAMHEARKHAAWYMNGYYGSAKFR 303 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/323 (37%), Positives = 180/323 (55%), Gaps = 6/323 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--RLRM 58 M+IG ++R R + AP+AGIT+ PFR + G L SEM+S+ + S+K+ LR Sbjct: 1 MKIGDLEIRGRTVLAPLAGITNLPFRIIAKGCGCTLVCSEMVSAKGLEFNSEKTVQLLRT 60 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQY 117 + P +VQI G++ MA+AAR E A IIDIN GC KKV R AG AL++ Sbjct: 61 DACERP--VSVQIFGAEALSMANAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKD 118 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 D ++I+ V AV +P T+KIR+GW +IA++AED G+ A+ IH RT A F Sbjct: 119 MDNARAIIRAVRRAVSMPFTIKIRSGWDSSASQAFDIARMAEDNGVDAIAIHPRTAAQGF 178 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G A++ I +K+ ++IPVI NGDIT P + A++ TG D +M+GRAA G P+IF I Sbjct: 179 RGRADWSMIARLKEMLTIPVIGNGDITTPEQGVAMIQETGCDGVMVGRAAMGNPFIFGGI 238 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 + L P P+ E+ +++ V + G R+ R ++W+++ A FR Sbjct: 239 EALLRGEAWNEPSPM-EIFQIMEEMVESHVAYLGERPACRMMRSRLAWFVKGFAGASVFR 297 Query: 298 RTFNAIEDASEQLEALEAYFENF 320 R IE + + + Y +F Sbjct: 298 RELTGIETLDQAMALIRRYEADF 320 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 172/298 (57%), Gaps = 5/298 (1%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG ++ +R + APMAG+T+ FRT+ E AGL V EM+S ++ ++K+ L M+HID Sbjct: 35 IGNVEIPHRTVLAPMAGVTNSAFRTIAKEFSAGLVVMEMISEKGLLYNNEKT-LHMLHID 93 Query: 63 E-PGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E ++Q+ G D + + AA I + A I+DINMGCP KV + AG+ L+ PD Sbjct: 94 ENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDK 153 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I+ EV + +D+P+T+K+RTGW+ E A AE G+ AL +HGRTR ++ G Sbjct: 154 IYHIVKEVTSVLDIPLTVKMRTGWSDSDLAVEN-ALAAESAGVSALAMHGRTREQMYTGH 212 Query: 181 AEYDSI-RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +++++ R K IP I NGD+ + A+ +++ G DA+M+GRAA P+IF +I H Sbjct: 213 CDHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAMNNPYIFTQINH 272 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 + +TGE LP LP + + H++ L D G R R YL+ A + R Sbjct: 273 FFETGEELPDLPFDKKLDIAEDHLKRLVDLKGEMIAVREFRGLAPHYLRGTAGAAKVR 330 >UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW05_9BACE Length = 307 Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 131/296 (44%), Positives = 172/296 (58%), Gaps = 16/296 (5%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--RLRMVHIDEPGIRTVQIAGS 74 MAG+TD FRT+C E+GAG T++EM+S+ ++ KS L++ + P QI GS Sbjct: 1 MAGVTDMAFRTICRELGAGYTITEMVSAKALCYQDKKSIPLLKLGEGEHPC--AAQIFGS 58 Query: 75 DPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV-NAV 132 D K M +AA I E SGA IIDINMGCP KV GS L++ D + VV A Sbjct: 59 DEKCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAG 118 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 + PVT+K R GW NC E A+ E G+ A+ +HGRTR ++ G A +D IR VKQ Sbjct: 119 ERPVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTRTQMYAGTANWDYIREVKQA 178 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL-P 251 VSIPVIANGD+ D A +L YTGAD MIGR G PW+F++ + L+ GE +PPL P Sbjct: 179 VSIPVIANGDVFDGPAAAHILRYTGADMAMIGRGCFGNPWVFQQARAALE-GEEIPPLPP 237 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRI----ARKHVSWYLQEHAPNDQFRRTFNAI 303 LAE R+ A VR+ + KG I ARK +WYL+ A ++ + I Sbjct: 238 LAE--RVDTA-VRQF-ELAAAHKGEHIACLEARKQYAWYLKGVAFAGYYKEQISHI 289 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/325 (38%), Positives = 180/325 (55%), Gaps = 23/325 (7%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSN--------PQVWES 51 ++IG L +R++ +P++G+TD FR L + +EM+S+ PQV E Sbjct: 33 LQIGSLTLHSRVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQVMEI 92 Query: 52 DKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAG 111 D + P ++Q+ P MA+AA+ V GAQ +DINMGCP K+ +K G Sbjct: 93 DPR-------ENP--ISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGG 143 Query: 112 SALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGR 171 S+LL+ P V ++I+ VV AVDVPVT+K R GW N E AQ +D G Q LT+HGR Sbjct: 144 SSLLRQPAVAEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGR 203 Query: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 TRA +NG A + I VKQ ++IPVIANGDI A A L+ TGAD +M R + G P Sbjct: 204 TRAQGYNGRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYP 263 Query: 232 WIFREIQHYLDTGELLPPLPLAEVKRLLCA--HVRELHDFYGPAKGYRIARKHVSWYLQE 289 ++ EI+H+ TGE +AE +L CA H++ L ++ G +G ARKH++WY ++ Sbjct: 264 FLVGEIEHFFKTGEKRKAPTVAE--KLTCAQEHLQMLWEYKG-QRGLFQARKHLAWYCKD 320 Query: 290 HAPNDQFRRTFNAIEDASEQLEALE 314 R I E + L+ Sbjct: 321 FPGAAALREQLFQINSVQEGKDLLD 345 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 110/319 (34%), Positives = 171/319 (53%), Gaps = 2/319 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IG N + APMAG TD FR +C E+G GL +EM+S+ +ES+ ++ V Sbjct: 1 MNIGNLIFHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYESNNTKELCVI 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 ++ +Q+ G +P+ MA+A N I+D+NMGCPA K+ + GSAL++ P Sbjct: 61 SNKEKPVALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPK 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I+ + P+T+K R G+ + N E A++ E G+ A+TIHGRTR ++ G Sbjct: 121 LASEIIKAMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +A++ I VK VSIPVI NGD+ A +++ T D +MIGR AQG PWIF++I Sbjct: 181 KADWAIISKVKNSVSIPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQGNPWIFKQINE 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + + P P + + H ++ +++ K R RKHV+ Y++ + Sbjct: 241 KIKGEHVYYPTPQERID-ICINHYKKSLEYFEEHKAVREMRKHVAVYVKGLKNCTDIKDK 299 Query: 300 FNAIEDASEQLEALEAYFE 318 N +D + LE L Y E Sbjct: 300 VNMEKDPDKVLEELIKYRE 318 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 113/323 (34%), Positives = 180/323 (55%), Gaps = 3/323 (0%) Query: 2 RIGQYQLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG ++ + L+ APM ++D PFR LC E GA + +E +SS + E+ KS +++ Sbjct: 3 KIGNIEVGDFPLLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIREAAKSTMKLDI 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ +QI G++ + M + I +SG IIDIN GCP KKV K AG+ +L+ D+ Sbjct: 63 YEKERPVGIQIFGANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKDIDL 122 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + S+ +V +P+T+K R GW + E+A+ +D G +A++IHGRTRA ++ GE Sbjct: 123 MVSLTEAMVKNTSLPITVKTRLGWDHDSIKIVEVAERLQDVGCKAISIHGRTRAQMYKGE 182 Query: 181 AEYDSIRAVKQ--KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A++ I VK ++ IPV NGD+ P KA + D G D MIGRA+ G PW FRE++ Sbjct: 183 ADWAPIAEVKNNPRMHIPVFGNGDVDSPEKAMEMRDNFGLDGAMIGRASIGYPWFFREVK 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 HY +TG+ L P L E H++ D+ G G R+H + Y + ++R Sbjct: 243 HYFETGKHLAPPTLEERVDAARRHLQMAIDWKGERLGVFETRRHYTNYFKGIPHFKEYRM 302 Query: 299 TFNAIEDASEQLEALEAYFENFA 321 +D+ + +A + + FA Sbjct: 303 KMVTSDDSVDVFKAFDEVEKEFA 325 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 121/301 (40%), Positives = 175/301 (58%), Gaps = 8/301 (2%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 RIG QL + APMAG++D +R + +MGA LT +EM+S+ + ++K++ + Sbjct: 5 RIGNIQLDGFALLAPMAGVSDLAYRVIARKMGAALTTAEMVSAKGLYYHNEKTKDMLKIA 64 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 +E ++Q+ GSDP MA A++ ++GA I+DINMGCP +KV + GSAL++ + Sbjct: 65 EEEHPVSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVTLA 124 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I++ V AV +PVT+K+R GW+ + N E+A AE G A+T+HGRTR + G A Sbjct: 125 AEIISAVTAAVKIPVTIKMRLGWSRDTINAVELAMAAESAGAAAITVHGRTREDFYMGTA 184 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ I+ V V IPVI NGD+ D A+A+++ TG A+ IGRAA G PW+F + YL Sbjct: 185 DWREIKKVVDAVRIPVIGNGDVGDGPAAKALMEETGCAAVAIGRAAWGNPWVFGAVNTYL 244 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA----RKHVSWYLQEHAPNDQFR 297 +TGE+LP E RL A + LH KG RIA R H S Y R Sbjct: 245 ETGEILPGPSWEE--RLAMAR-KHLHGLC-VEKGERIAVREMRAHASRYFHGLPKATVLR 300 Query: 298 R 298 R Sbjct: 301 R 301 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 168/300 (56%), Gaps = 6/300 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++G L N + AP+AG +D PFR + GL EM+ + V D + RM+ Sbjct: 7 FQLGNLTLPNPVFYAPLAGCSDFPFRQMSARYSPGLMYCEMVKMDALV-RHDPNTFRMLD 65 Query: 61 IDEPGIRTV--QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 D+ + + Q+ GS P+ A AA+I + G ++D+N GCP KV + +GS LL+ P Sbjct: 66 FDK-DMHPIGGQLCGSKPQLAAKAAKIIEDLGFDVVDLNCGCPVDKVTKDGSGSGLLKNP 124 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 ++ IL+E+V AV +PVT+KIR GW E+ EEI Q+AE G +A+TIHGRTR + Sbjct: 125 LLIGEILSEMVAAVKIPVTVKIRAGWDDENLCAEEITQIAEKAGAKAITIHGRTRQQAYR 184 Query: 179 GEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G A +D I+A KQ I VI NGD+ DP A+ + +YTG DA+++ R G+PWI ++I Sbjct: 185 GPANWDHIKASKQVAKHIKVIGNGDVMDPTSAKRMFEYTGCDAVLVARGTMGQPWIAQDI 244 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 +YL G + P + ++ L H +Y P + R+ WY++ +FR Sbjct: 245 LNYLQGGTIRVHTP-EDCRQALYEHFLCTERYYNPRQVVIEMRRVGCWYIKSSGGTREFR 303 >UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes RepID=Q5FMA1_LACAC Length = 342 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 110/321 (34%), Positives = 180/321 (56%), Gaps = 3/321 (0%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 +I + NR++ APMAG+++ FR +C E GAGL V EM+S + ++ + K+ L M+ + Sbjct: 7 KIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGAGLVVCEMISDHGIIYRNKKT-LSMMDV 65 Query: 62 D-EPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D ++QI G + + AA+ I+ + A IIDINMGCP KV + AGS L + Sbjct: 66 DPREHPMSIQIFGGTEETLLQAAQYIDQNTDADIIDINMGCPVPKVTKTDAGSKWLLDSN 125 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + ++ VV V PV++K+R GW +H E A A++ G + +HGRTR ++ G Sbjct: 126 KIYQMVHAVVQNVQKPVSVKMRIGWDRKHVFAVENALAAQEAGASMIAMHGRTRKQMYQG 185 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 EA+++ + V Q + +P +ANGDI P A+ LD G A+M+GRAA G PWI +++ H Sbjct: 186 EADWEVLHDVAQVLDVPFVANGDIATPELAKKALDDIGCTAVMVGRAALGNPWILKDMVH 245 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TGE LPP + E ++ L + +G + R+ ++YL+ + + R Sbjct: 246 YLETGETLPPQTVREKVETAKHQLQGLIEIHGEKRAVPEFRQQAAYYLKGIPRSARTRAK 305 Query: 300 FNAIEDASEQLEALEAYFENF 320 N + E + L+ + + + Sbjct: 306 INEVWTRQEVYDLLDNFVDEY 326 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 2/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M I +++ ++ APMAGITD R L G GL +EM+S+N V D +R + Sbjct: 20 MIIKSLHIKHNILLAPMAGITDLACRLLMRPYGIGLAFTEMISANGLVLGGDATRDLLAS 79 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +Q+ G +PK ++ A + VES +ID+N+GCP KKV R AGSAL+Q P Sbjct: 80 TPSDRPLGIQLFGENPKYLSQACK-QVESHGDLIDLNIGCPVKKVVRSGAGSALMQTPAR 138 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V I+ + A +P+T+KIR GW H N EIA +AE G+ A+T+H RTR+ F+G Sbjct: 139 VAQIIAAMRRATHLPLTVKIRAGWDASHINFLEIAHIAEQEGVDAITLHPRTRSQGFSGS 198 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A +D I +K++ +IPVI +GDI + A+ +L TG DA+MIGR G PW+ R+I Sbjct: 199 ANWDLIAELKRRSTIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGNPWLARDIL-A 257 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 + G+ P+ E + H+ F K RKH+ WY + QFR + Sbjct: 258 MRQGQTPAPVTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLPGAAQFRSSI 317 Query: 301 NAIEDASEQLEALEAYFENFA 321 N E + +FE+ A Sbjct: 318 NRAMSIEEMRTLVMHFFEHAA 338 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 173/316 (54%), Gaps = 4/316 (1%) Query: 1 MRIGQYQLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG +L L+ APM ++D PFR LC GA + SE +SS + ++ KSR+++ Sbjct: 4 VKIGNIELPEFPLLLAPMEDVSDPPFRRLCKTHGADMMYSEFISSEGLIRDAIKSRMKLD 63 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D +QI G D + M +++I ++DIN GCP KKV + AG+ +L+ D Sbjct: 64 IFDYERPVGIQIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKDVD 123 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ + V+ D+PVT+K R GW N +E+A+ +D G+QALTIH RTRA ++ G Sbjct: 124 LMVRLTKAVIKGTDLPVTVKTRLGWDESSINIDEVAERLQDIGVQALTIHARTRAQMYKG 183 Query: 180 EAEYDSIRAVKQ--KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 +++ I VK ++++P+ NGDI P KA + G D +MIGRAA G PWIF EI Sbjct: 184 HSDWSHIARVKNNPRITMPIFGNGDIDSPEKALQYKNEYGIDGIMIGRAAIGYPWIFNEI 243 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 +HY TGE LP + + H++ ++ G G R+H + Y + +F+ Sbjct: 244 KHYFKTGEHLPAPTVIDRVEAARNHLKWSMEWKGERLGIVEMRRHYTNYFKGIHSFKEFK 303 Query: 298 RTFNAIEDASEQLEAL 313 + D E L A+ Sbjct: 304 QKL-VTTDEPENLFAI 318 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 114/314 (36%), Positives = 176/314 (56%), Gaps = 12/314 (3%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDK--SRLRMVHIDEPGIRTV 69 L APMAG+++ PFR LC+ GA + V+E +S+ E++ S+LR + P V Sbjct: 16 LYLAPMAGVSESPFRRLCHAHGADVVVTEFLSAEGIRRENEATISKLRFAPEERP--IGV 73 Query: 70 QIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 QI GS+P MADAA + + +DIN GCP KKV R+ GS L+ D+V+ I+ V Sbjct: 74 QIFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDLDLVEEIIRAV 133 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 A +PVT+K R+GW E R+ IA +D G + +H RTR +++G A +D I Sbjct: 134 SKATPLPVTVKTRSGWNEEMRDPVGIALRMQDAGAKVFALHARTRTQMYSGSANWDEIAR 193 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V + + IPV+ NGDI L A+ +LD+T AD +MIGR + G+PW+F++ + +D G +P Sbjct: 194 VAEALDIPVLGNGDIKTALDAKRMLDHTKADGIMIGRGSYGQPWVFKQTRALID-GTPVP 252 Query: 249 PLP-LAEVKRLLCAHVRELHDFYGPAKGYRIA-RKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P + E + H R + + A G + RKH+ WY++ + + R + + D Sbjct: 253 ETPGVQERFAIALDHARMVQGYEVDAIGAALEFRKHLGWYVKGLPNSAELRAKLHQVRDF 312 Query: 307 SEQLEALEAYFENF 320 +E +E F N+ Sbjct: 313 AE----VETIFTNY 322 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 160/301 (53%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G + N +I APMAGITD P R L GAGL + M+S+ V +K+ + Sbjct: 4 LSLGNIEFDNNIILAPMAGITDLPLRRLAKSGGAGLVYTGMLSARALVRSDEKTEKLLKT 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ QI GS MA+AA+I SGA IID+N+GCP KKV + AG+ LL + Sbjct: 64 TEDERPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV +VDVPVT+KIRTG PEH EI ++A +CGI+ + +H R + +G Sbjct: 124 VSEILESVVKSVDVPVTVKIRTGLLPEHNAATEIIKVAYNCGIKMVAVHARPASQGHSGF 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + A IPVIANG + D A L +MIGR A G IF+ ++ + Sbjct: 184 PDLKLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGALGNYSIFKRLEAF 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +G+ LP E L HV+ ++YG KG+ + +K +Y+++ + R F Sbjct: 244 FSSGKKLPLPSKTEKVEWLKKHVQYSVEYYGEKKGFVVMKKVFHYYVKDLPNAAKIRDIF 303 Query: 301 N 301 N Sbjct: 304 N 304 >UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1LWM8_METRJ Length = 341 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 118/287 (41%), Positives = 164/287 (57%), Gaps = 6/287 (2%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM--VHIDEPGIRTVQIA 72 AP++G+TD R + GA +SEM+++ S ++ LR +D + VQ+A Sbjct: 29 APLSGVTDLHMRRIARRCGADAVISEMVAAREFTRGSGEATLRAEGSGVD---LHVVQLA 85 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G + MA+AAR+ GA +ID+NMGCPAK V +GSAL++ D + +L V AV Sbjct: 86 GCEAGPMAEAARLAEAGGADVIDVNMGCPAKIVTGIASGSALMRDLDHAERLLASVRGAV 145 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 +PVT+K+R GW RN ++A AE G+ A+T+HGRTR + G A++ +IRAV Sbjct: 146 SIPVTVKMRLGWDDASRNAADLAARAERLGLNAVTVHGRTRQQFYKGRADWAAIRAVVAA 205 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 VSIPVIANGD+TD ARA LD +GA +MIGRAA GRPW+ ++ L TG Sbjct: 206 VSIPVIANGDVTDFASARACLDASGAAGVMIGRAATGRPWLVGQVAAAL-TGRPAAEPSR 264 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 +E L H L YG G R ARKH++ Y + D R+ Sbjct: 265 SEQAALAAEHYAGLLSLYGRDMGVRHARKHLAAYAETGGALDPAERS 311 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 121/323 (37%), Positives = 174/323 (53%), Gaps = 12/323 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG Y L N I APMAG+++RPFR + ++ GA L +E++S+ + +++ L+ + Sbjct: 34 LQIGPYSLPNPYILAPMAGVSERPFRVIAFKWGAALCPTELVSAQ-GLMRANQRTLKYLR 92 Query: 61 IDEPGIR--TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 R ++QI G +P+ MA AA + GAQIIDINMGCP KKV + AGSAL+ P Sbjct: 93 FSPEVERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEP 152 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 I+ + A +PVT KIR+GW HRN ++A G AL IH RTR ++ Sbjct: 153 LRAARIVQAIAEATGLPVTCKIRSGWDAHHRNYLQMAGELFSAGCAALAIHPRTRDQGYS 212 Query: 179 GEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G A++ I +K+ +I NGD+ P AR + + TG D +MIGR A G PWIFRE Sbjct: 213 GFADWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGRGALGNPWIFRE- 271 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQEHAPNDQF 296 L G PP P +L H R +F G P R R+H++WY F Sbjct: 272 ---LAGGP--PPTPEERCAGVL-EHFRAHVEFVGEPLGAVRSFRRHMAWYAHGLHGAAAF 325 Query: 297 RRTFNAIEDASEQLEALEAYFEN 319 R N +E + +A+ +F + Sbjct: 326 RAEVNTLETPASVEDAVVRFFAS 348 >UniRef50_C6SB16 tRNA-dihydrouridine synthase B n=1 Tax=Neisseria meningitidis alpha153 RepID=C6SB16_NEIME Length = 207 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 120/187 (64%) Query: 135 PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS 194 P+ K GW +H+N IA++AEDCGI AL +HGRTR ++ GEA Y+ I K +++ Sbjct: 6 PLPSKPVWGWHDDHQNLPVIAKIAEDCGIAALAVHGRTRTQMYKGEARYELIAETKCRLN 65 Query: 195 IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAE 254 IPV NGDIT P KA+AVL T AD +MIGR AQGRPW FR+++HY + G L P L LAE Sbjct: 66 IPVWVNGDITSPQKAQAVLKQTAADGIMIGRGAQGRPWFFRDLKHYAEHGVLPPALSLAE 125 Query: 255 VKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALE 314 + H+R +H FYG + G RIARKH+ WY+ E +Q RR N ++ A+ Q + L Sbjct: 126 CAAAILNHIRAIHAFYGDSAGVRIARKHIGWYIDEMPDGEQTRREINRLDSAAAQYDTLA 185 Query: 315 AYFENFA 321 Y E A Sbjct: 186 GYLERLA 192 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 179/312 (57%), Gaps = 8/312 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +++G+ + ++ APMAG+T++ FR LC E G GL V+EM+++ V +S + H Sbjct: 67 LKLGKLTVDTPVVLAPMAGVTNKAFRRLCSEYGGGLYVTEMVTARALVERKPESMRIIEH 126 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + IR++QI G D + A R+ VE A ID+N GCPA KV R+ G+AL D Sbjct: 127 DPDEKIRSIQIYGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTD 186 Query: 120 VVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 + +I+ V D+P+T+K+R G +H E A++A D G+ A+ +HGRT A Sbjct: 187 LFTAIVQTAVKEASRNDIPLTIKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQH 246 Query: 177 FNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 ++G+A++DSI +++ + +P++ NGDI A +++ TG D ++IGR QGRPW+F Sbjct: 247 YSGKADWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGCQGRPWLFG 306 Query: 236 EIQHYLD-TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQEHAPN 293 ++Q+ + + E + P L EV ++ H L + +G +G R RKHV+WY + + Sbjct: 307 DLQNAFEGSSERIRPT-LTEVSDMIYRHAELLVETFGDETRGLREIRKHVAWYFKGYPVG 365 Query: 294 DQFRRTFNAIED 305 + R + D Sbjct: 366 GELRAKMAQVPD 377 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 127/314 (40%), Positives = 171/314 (54%), Gaps = 18/314 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR--LRMVHIDEPGIR- 67 RL+ APMAG++D FRTLC E GA LT +EM+S+ + ++K+R LR+ PG Sbjct: 12 RLLLAPMAGVSDEAFRTLCREQGADLTYTEMVSAKGLSYANEKTRHLLRLA----PGEDQ 67 Query: 68 -TVQIAGSDPKEMA-DAARINVESGAQI--IDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ G +P MA AA I E G + +DINMGCPA+K+ K GSAL++ P + S Sbjct: 68 VAVQLFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPALAAS 127 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+ V AV PVT+K R GWA E A+ ED G A+ +HGR L+ G AE+ Sbjct: 128 IVRAVRAAVSRPVTVKFRRGWAEGDETAPEFARRMEDAGACAIAVHGRYAEQLYRGRAEW 187 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 +I VK+ VS+PV+ NGD+ A A+ + TG DA+MI RAA+G PW+F + + L Sbjct: 188 GAIARVKEAVSVPVVGNGDVRSGADAVAITERTGCDAVMIARAAEGNPWLFAQAKAAL-A 246 Query: 244 GELLPPLPLAEVKRLLC-AHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN- 301 GE P P E + L H R L G + RKH WYL R N Sbjct: 247 GEPEPDGPTVEERIALARRHARLLSAREG--RNIVRMRKHAMWYLAGLPGAAAARGRING 304 Query: 302 --AIEDASEQLEAL 313 ++ED E + L Sbjct: 305 CVSVEDFDEVFDEL 318 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 164/279 (58%), Gaps = 7/279 (2%) Query: 10 NRLI-AAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDK--SRLRMVHIDEPGI 66 NRL+ APM G+T+ FR+LC GA + +E +S++ + DK +L++++ + P Sbjct: 17 NRLVFLAPMEGVTNVYFRSLCKSFGADMVYTEFISADALIRHVDKIQGKLKIINSEHP-- 74 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQI G D M +AARI E +D+N GCP KK+ R+ AG+ +L+ P + I Sbjct: 75 IAVQIYGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEITQ 134 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 +VV++V++P+T+K R GW + ++A+ +D GI LTIHGRT + +++G+A+++ I Sbjct: 135 QVVHSVNIPITVKTRLGWDENSKIIVDLAERLQDTGIALLTIHGRTGSQMYSGKADWNLI 194 Query: 187 RAVKQ--KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 AVK ++ IP+ NGDI P + + G DA+MIGRA+ G PWIF+E+++YL Sbjct: 195 GAVKNNPRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWIFQEVKYYLKYN 254 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHV 283 +L P +L + + G +G +R+H+ Sbjct: 255 DLAPKKSFEYYLSVLKQQILQSVSQLGERQGILNSRRHI 293 >UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylobacter RepID=A7H1K2_CAMJD Length = 308 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 116/310 (37%), Positives = 174/310 (56%), Gaps = 17/310 (5%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--RLRMVHIDEPGIRTV 69 L APMAG +D PFR + + GA +T+SEM+SSN V+ES K+ L ++ P I V Sbjct: 9 LFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELENPYI--V 66 Query: 70 QIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 QIAG D + + A + +N ID N GCP KV ++ AGSALL+ ++ K+++ + Sbjct: 67 QIAGGDKEVLKKAVQMLNKMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFKNLVGVI 126 Query: 129 V-NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 N ++K R G+ ++ E++A++ E G+ +++HGRTR L++G+A+Y+SI Sbjct: 127 KENNKKSLTSVKFRLGFNEKYP--EKMAKICESLGVDFVSVHGRTRKQLYSGKADYESIA 184 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 + K V IPVIANGDI + A+ V T D LMIGRA+ G PWIF EI+ E L Sbjct: 185 SAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWIFYEIKSGKSVDEKL 243 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 K ++ H E+ Y +G I RKH+ Y + H FR N I++A Sbjct: 244 K-------KEIILTHFDEMIKHY-KDQGVSIFRKHLHEYSKGHKDASAFRDGVNRIDNAE 295 Query: 308 EQLEALEAYF 317 + + +E +F Sbjct: 296 KMRKKIEEFF 305 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 11/303 (3%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP----GIR 67 L AP+AG +D FR +C GA + SEM+S++ S K+ L+ V DE GI Sbjct: 11 LFLAPLAGYSDSAFRQICKNWGAEVLYSEMVSADGLTRNSAKT-LQYVQFDESEHPFGI- 68 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 QI GS+P MA A + + +DINMGCP KKV RK AGSAL+Q P + I+ E Sbjct: 69 --QIFGSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKIVKE 126 Query: 128 VVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 V NA+ +P+++K R+GW +++N + + ++CG L +H RT + +F+G + ++ Sbjct: 127 VKNALLGRIPLSVKFRSGWNFQNQNYLQFGLMLQECGADFLCLHPRTSSQMFSGTSNWEQ 186 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I+ +KQ V IPV+ NGDI P A+ ++ T D +MIGR A G+PW+F + + + TG Sbjct: 187 IKILKQNVQIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKPWLFAQSRQLISTGT 246 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 P + E+ + + AH+ + + R R H+ +Y + + R N E+ Sbjct: 247 YNPVIQ-KEIVKTIFAHLDKALLYKSEDVVVREMRAHLCFYTKGILGGAELRNQINHTEN 305 Query: 306 ASE 308 SE Sbjct: 306 ISE 308 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 112/327 (34%), Positives = 170/327 (51%), Gaps = 17/327 (5%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG +L + + AP+AG TD RT+ E GAGL SEM+S+ ++E + + Sbjct: 8 IGDIELPSPFLMAPLAGFTDNAVRTIALEFGAGLVYSEMVSAKGLIYEQKNTEELLDFRG 67 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 G +QI GSDP +A + G I+DINMGCP +K+ + +G+AL++ PD++ Sbjct: 68 ADGFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDIIY 127 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 ++ + V PVT KIR GW + N + A+ E G A+ +HGRT + G Sbjct: 128 DMVKDAVKITQKPVTAKIRIGWDNNNINAVDCAKAIESAGASAVAVHGRTAKQKYEGSVN 187 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR------- 235 D I +VKQ VSIPVI NGDI +A +D TG D +MIGR A G+PWIF+ Sbjct: 188 RDVIASVKQSVSIPVIGNGDIKSAKEALEFMDETGCDMVMIGRGAIGKPWIFKSCNMALS 247 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA----RKHVSWYLQEHA 291 EI+ E+ P A+ + +++L D KG + A RK +S YL+ + Sbjct: 248 EIRKGKSIDEITEYEPCADE---ILNTLKKLIDLTVSYKGEKRALLELRKKLSKYLKNTS 304 Query: 292 PNDQFRRTFNAIEDASEQLEALEAYFE 318 +R+ + +A ++E + +E Sbjct: 305 GVKDYRKR---LYEAGTKIELMGIIYE 328 >UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteobacteria RepID=B8GW86_CAUCN Length = 335 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 172/297 (57%), Gaps = 11/297 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG ++ R+ APM G++D PFR +GA +EM++S E K R +V Sbjct: 5 LDIGGVEVPGRVWIAPMTGVSDLPFRETASALGAPYVATEMVASA----EFAKGRPDVVR 60 Query: 61 IDEPG----IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLA-GSALL 115 G + +Q+ G D MA AR+ E+GA+IID+N GCPAK+V A GSAL+ Sbjct: 61 RAAVGEGLPLTVIQLVGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALM 120 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 + PD+ ++++ V AVDVPVT+K+R GW + N +IA+ AE G +A+T+HGRTR Sbjct: 121 REPDLAEALVAAAVEAVDVPVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVHGRTRNQ 180 Query: 176 LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 + G A++ ++ AVKQ VS+PV+ NGDI D AR L+ +GAD +MIGR GRPWI Sbjct: 181 FYKGVADWTAVAAVKQAVSVPVLVNGDIVDGETARQALEQSGADGVMIGRGVYGRPWIAG 240 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP 292 I+ L+ P E + H R FYG G ++ RKH++ Y+ E AP Sbjct: 241 AIEAALEGRGFQEP-EAEERLAIAITHFRRSLSFYGERLGLKMFRKHLASYI-EAAP 295 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 104/313 (33%), Positives = 180/313 (57%), Gaps = 7/313 (2%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ AP+AG+TD +R + E L +EM+S N +K+ ++ + E +VQ Sbjct: 3 KIYTAPIAGVTDYTYRGILKEFKPDLLFTEMVSINALEVACEKTLKVILRLREGD--SVQ 60 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + G D K+M ++A+ G + IDIN GCP KK+ G+AL++ P++VK++L+EV + Sbjct: 61 LFGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVKAMLSEVRS 120 Query: 131 AVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 A++ +++KIR G+ E +N EIA++A++ G + +TIHGRTR ++ G+A++ I+ Sbjct: 121 ALNDKTDLSIKIRVGYK-ESKNPVEIAKIAQETGCKHITIHGRTREQMYTGKADWSIIKE 179 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 VK+ V IPVI NGDI A+ +DY+G D +M+ R G PW+ R+I+ Y + G++L Sbjct: 180 VKESVDIPVIGNGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLIRDIREYFEYGKILH 239 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIA-RKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 P+ E + H + + P + + RKH+ WYL+ + + N ++ + Sbjct: 240 PVTDIEKIDMAIKHTKRT-EVEHPERPFIFELRKHLCWYLKGIRNTAEIKDKINHTDNYN 298 Query: 308 EQLEALEAYFENF 320 E +E L +N Sbjct: 299 EIVELLNRVKDNL 311 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 155/276 (56%), Gaps = 8/276 (2%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 LI APMAG +D P+R +C G ++ +E++S + VW + K+ + +E T Q+ Sbjct: 35 LILAPMAGFSDMPYRLICRRFGMSMSYTEVVSVSGIVWNNKKTFKLLDFKEEERPVTFQV 94 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G+D ++ +A + + G IIDINMGC + K AG+ +L++P + + + + Sbjct: 95 VGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKISKMFNNLTGS 154 Query: 132 VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 + VPVT KIR GW + RN E+A++ E+ G + +HGRTR+ F+G A++D+I VKQ Sbjct: 155 LSVPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQYFSGAADWDAIAEVKQ 214 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 V IPVIANGD+ + T D +MIGRAA G PWIFR Y D + Sbjct: 215 SVKIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGHPWIFR----YKDREN----IS 266 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL 287 +E ++ H+ + ++YG A G + RKH Y+ Sbjct: 267 GSEKIEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYI 302 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 151/249 (60%), Gaps = 5/249 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MR+G+ L L+ AP+A +T+ FR +C + GA L +EM+SS+ V+ + S +R + Sbjct: 1 MRLGRVDLPGNLLLAPLAEVTNLAFRLMCKKYGASLCFTEMISSDAVVYGNASSAMRGIT 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 DE +Q+ G+ P+ + +AA + + +IDIN+GCPA + GSALL+ P+ Sbjct: 61 CDEERPFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCE-EIAQLAEDCGIQALTIHGRTRACLFN 178 +V I + + VD PVT KIR E R ++A ED G+ A+T+HGRT ++ Sbjct: 121 LVSDIFSTLCEGVDTPVTAKIRV---LESRAATLDMAHRLEDAGVCAITVHGRTCEQGYS 177 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A++ + +K+++SIPVI NGDI D + A VL+YTG D LMIGRAA G P +F I Sbjct: 178 GTADHSYAKLIKEELSIPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGDPHVFHRIS 237 Query: 239 HYLDTGELL 247 YLD GE++ Sbjct: 238 RYLDDGEVI 246 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/321 (36%), Positives = 177/321 (55%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG L LI APMAG TDR FR L E GA LT +EM+S+ ++ + + + Sbjct: 5 LKIGPVTLAAPLIMAPMAGYTDRVFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDL 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 EPG VQ+ G +P+ MA A RI V +GA IID+NMGCP K+ + GSAL++ Sbjct: 65 KGEPGPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPR 124 Query: 121 VKSILTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +I+ +V A VPVT+K+R GW + N E A+ G A+ IHGRTR+ ++G Sbjct: 125 AAAIVAAMVRAAGPVPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ R VK+ V +PVI NGD+ A +L TG D +M+GR A G PW+ I+ Sbjct: 185 RADWSYFRRVKEAVDVPVIGNGDVRTARDAVTMLAETGCDGVMVGRGAVGNPWLLTAIRA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 L+ PP+ + + C H++ L + G + RKH++ Y + + R+ Sbjct: 245 VLEGRPEPPPVDVRTRMTMACRHLKLLVELKGETTAVKEMRKHLACYFRGLPGAARLRQQ 304 Query: 300 FNAIEDASEQLEALEAYFENF 320 N + A+E + A++AY ++ Sbjct: 305 INTLTTAAEVIAAIKAYLRDY 325 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 115/324 (35%), Positives = 180/324 (55%), Gaps = 12/324 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSN--PQVWESDKSRLR 57 +IG ++R + APMAG+TD FR +G GL ++E S++ ++ E+ R Sbjct: 23 FQIGSVEIRPATVLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARRYL 82 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 + +E I + Q+ GSD + +ADAA++ + G ++D+N+GCP+K+V + GS LL+ Sbjct: 83 TFYGNERPI-SAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRD 141 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 +K I V AV +P T+K R GW + E+A+LAE+CG+ A+ +H RTR + Sbjct: 142 LPQIKVIFESVRKAVTIPFTVKFRAGWNEKELVFLELAKLAENCGLNAVAMHARTREQGY 201 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 +G+A + I +KQ V IPVI NGDI P A A++ TG DA+MIGR+A PWIFR+I Sbjct: 202 SGQANWGWIADLKQVVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSAASNPWIFRQI 261 Query: 238 QHYLDTGELLPPLPLAEVK-RLLCAHVREL--HDFYGPAKGYRIARKHVSWYLQEHAPND 294 + Y TG LP E + ++ + R L +D G A+G ++ SW+ Sbjct: 262 EQYTATGRY--DLPTNEDRYEMIRMYFRMLIENDTQG-AEGK--MKQFASWFTHGVPGGG 316 Query: 295 QFRRTFNAIEDASEQLEALEAYFE 318 R+ + L A++ +FE Sbjct: 317 VLRKAVYEAKKRETILVAVDQFFE 340 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 11/310 (3%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE----PG 65 N+ I APMAG+T P+R EMG + +SEM+S+ ++S K+ ++ +E Sbjct: 16 NKAILAPMAGVTTLPYRLFMREMGCKIFISEMVSAKGLYYKS-KNTFPLMETNELEHKDS 74 Query: 66 IRTVQIAGSDPKEMAD-AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + +QI GS+P+ M + R ++ IDINMGCP KK+ GSALL+ D + Sbjct: 75 VTGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLDKANKV 134 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + EV +A PV++K+R G+ E+I + ED G +T+HGRTR +F GE +YD Sbjct: 135 VREVKSASSKPVSVKVRLGF--NENIIEDIIKAIEDGGADMITVHGRTREQVFTGEVDYD 192 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I+ K+ S+P+IANGD+ + LKA+ +DYTGAD +MIGR A P+IF + + +G Sbjct: 193 GIKKAKETASVPLIANGDLDNYLKAKEKMDYTGADGVMIGRGANYDPFIFSQFNECI-SG 251 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA-RKHVSWYLQEHAPNDQFRRTFNAI 303 + + L + H E+H Y K I RK++ WY++ + + R + N + Sbjct: 252 KKVSEYSLRDKIDAARKHF-EIHLKYSKDKKKVIEFRKYLYWYIKGIKNSAKIRNSINNV 310 Query: 304 EDASEQLEAL 313 + + E Sbjct: 311 NEIDQVYEIF 320 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 160/291 (54%), Gaps = 3/291 (1%) Query: 1 MRIGQYQLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 MRIG +R L APM ++D PFR LC GA + +E +SS + E + ++ Sbjct: 65 MRIGHLDFDDRPLFLAPMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLREQEHEHQKLE 124 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 DE +Q+ G E+ +A + +G +IDIN GCP +K+ +K G+ +L+ D Sbjct: 125 IFDEERPIGIQVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLD 184 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +++I V+ PVT+K R GW + + ++A++ ED G+ ALT+H RTR + G Sbjct: 185 KMRNITAAVMEEATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKG 244 Query: 180 EAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 +A ++ +R +K++ + +P I NGD DP A+ + TG D +M+GR A G PWIF Sbjct: 245 DARWEWLRTIKEEGTRDMPFIGNGDALDPEAIEAMFEETGVDGVMLGRGALGNPWIFERA 304 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 + Y++TGEL PP E +++ H+ ++ G G RK+ S Y + Sbjct: 305 KTYMETGELPPPPDWEERVQVVAEHLSLKCEWLGERTGVMEMRKNYSSYFK 355 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 183 bits (464), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 102/314 (32%), Positives = 171/314 (54%), Gaps = 6/314 (1%) Query: 7 QLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 QL+N+ ++ AP+AG++D FR + GA T +EM+S N +++ K+ + + Sbjct: 4 QLKNKQIMLAPLAGVSDVGFRLISERYGADKTFTEMVSVNALYYDNKKTNDLLFISENEK 63 Query: 66 IRTVQIAGSDPK--EMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +Q+ GS P+ E +IN ++ I NMGCP K+ + GS L+ P +V+ Sbjct: 64 NCNIQLFGSKPEVIEKVIKDKINYIEKSKEISFNMGCPVAKITKNGEGSQLMANPKLVEE 123 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I + + D + +K R G +H N +I ++A+D GI + +H RT+ +++G A + Sbjct: 124 ICKTLRKSTDKKLNIKFRLGIDDKHINYLDIGKIAQDTGIDYVILHARTKDQMYSGNANW 183 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 D IR +K+ + IPVIANGDI V+D T AD +M+ R A G P++F+EI+ Y+ T Sbjct: 184 DHIRKLKENLQIPVIANGDIFSVEDFINVIDLTKADGVMLARGAMGNPFLFKEIKDYIKT 243 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRI-ARKHVSWYLQEHAPNDQFRRTFNA 302 G+ P P+ + +L+ + EL Y K RKH+SWY++ + + R N Sbjct: 244 GKYSKPSPIEIIDQLIDQYKLELK--YKEEKLVVTQMRKHLSWYIKGLENSSKIRDLVNK 301 Query: 303 IEDASEQLEALEAY 316 ++ E ++ LE Y Sbjct: 302 LKTIDEVMDELENY 315 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/328 (36%), Positives = 179/328 (54%), Gaps = 11/328 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG YQ R AP+AG++DRPFR +C MGA +EM+S++ + + ++ + Sbjct: 1 MQIGPYQFPGRYFLAPLAGVSDRPFRAICRRMGASFAYTEMVSAHGLMHGALQTSSYLDR 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQI S+P +A A + V++GA +ID+NM CP KKV AG+A+ + P Sbjct: 61 EPDEDPFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRK 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ + + AV VPVT+KIR GW NC ++A+ AE G A+ +HGRTR+ L++G+ Sbjct: 121 VEEAVRAIRAAVPVPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRTRSQLYSGK 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A ++ +RAVKQ V+IPV+ +GD+ A + + TG DA+++ R A G PWIFRE++ Sbjct: 181 ARWELVRAVKQAVAIPVLGSGDVWTAGDAVRMREETGCDAVLVARGACGNPWIFRELKAI 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVR---ELHDFYGPAK--------GYRIARKHVSWYLQE 289 PP E + HVR E P + R RKH+ WY + Sbjct: 241 EAGRPPPPPPGRDEWVGTVLEHVRLQVEHRARMAPGEPAEASERHAIRELRKHLLWYTRG 300 Query: 290 HAPNDQFRRTFNAIEDASEQLEALEAYF 317 FRR A+ A++ LE +F Sbjct: 301 RRGGVHFRRDAAALVTAADVATLLERHF 328 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 168/312 (53%), Gaps = 22/312 (7%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT-VQIAGSD 75 MAG+ D FR LC E G LT +EM+SS + ++K+R ++ + E R +Q+ G + Sbjct: 1 MAGVNDIVFRRLCLEQGCDLTYTEMISSKALSFANEKTR-HLLDLAEGERRVAIQLFGHE 59 Query: 76 PKEMA-DAARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 PK MA +AA + E G +IDINMGCPA K+ +K GSAL++ D+ SI+ +V AV Sbjct: 60 PKVMAREAAWVEDELGDALALIDINMGCPAHKIVKKGDGSALMRDQDLAASIVRDVARAV 119 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 PVT+K R G+ E + ED G A+T+HGRT A ++ G +E++ + VK Sbjct: 120 SCPVTVKFRRGFGAEEETAVDFGLRMEDAGAAAVTVHGRTAAQMYRGPSEWECVARVKAA 179 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP- 251 +S+PVI NGDI A ++ TG D +MI R AQG PWIF +++ LD +PP P Sbjct: 180 LSVPVIGNGDIVSGASAADMVRATGCDGVMIARGAQGNPWIFADVRRVLDG---MPPAPD 236 Query: 252 -----LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA---I 303 E+ R H+ L G Y RKHV WYL + R NA + Sbjct: 237 PTRQDRVEMAR---RHIHLLSSRLGNTVVY--MRKHVMWYLHGVPGASRARAALNACVTV 291 Query: 304 EDASEQLEALEA 315 +D L+ L A Sbjct: 292 DDFDRVLDELLA 303 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/323 (36%), Positives = 175/323 (54%), Gaps = 10/323 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG+ L L+ APMAG+TD +R L + GA + +EM+S V + ++ L + Sbjct: 13 LRIGKLLLDLPLVLAPMAGVTDSAYRALMADFGAAMVTTEMVSIQGLV-RNQRATLDLCR 71 Query: 61 IDEP-GI-RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 P G+ VQ+ G DP MA+AAR+ + GA +IDIN GCP +KV R+ AG+ LL+ P Sbjct: 72 QQHPVGVPLAVQVFGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDP 131 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 D + +++ V AV VPVT+KIR GW +A+ G+ A+T+HGRT A +++ Sbjct: 132 DRLAAMVEAVKRAVSVPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRTAAQMYS 191 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A++ I VK V++PVI NGD+T P A ++ TG D +MIGRA+ G PW+F I Sbjct: 192 GRADWSRIAEVKAAVAVPVIGNGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVIS 251 Query: 239 HYLDTGELLPPLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 G P + R AH+ A G+ +K + WY + P+ Sbjct: 252 RRWGRGARQGDCPGWNDFLRTAEAHLESFRTMRPRADGH--LKKLLIWY-SKGCPDSAGL 308 Query: 298 RTFNAIEDASEQLEALEAYFENF 320 R A D +E++ A F ++ Sbjct: 309 RCRIAGPDG---IESMLAAFRSW 328 >UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacterium RepID=B8DSX5_BIFA0 Length = 417 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 12/329 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 +R+G + ++ +PMAG+T+ PFR LC E G GL V+EM+++ V E + LR+ Sbjct: 41 IRLGDVMVNTPVMLSPMAGVTNWPFRVLCEEYGPDGLYVAEMVTARALV-ERNPKALRLC 99 Query: 60 HI-DEPGIRTVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQY 117 IR++Q+ G +P M AAR V++G +D+N GCP KV R+ GSAL Sbjct: 100 RFAPSERIRSLQLYGVNPSIMEQAARFLVDNGMMDHLDLNFGCPVPKVTRRGGGSALPWK 159 Query: 118 PDVVKSILTEVV---NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA 174 D+ I+ VV ++PVT KIR G EH E ++A++ G A+T+H RT A Sbjct: 160 TDLFTEIVQRVVAVCEPANIPVTAKIRVGLDHEHETFLEAGRIAQEEGCSAVTLHARTTA 219 Query: 175 CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 + G +++ I + + IPV NGDI A A+++ TG + IGR QGRPW+F Sbjct: 220 EYYGGHSDWCRIGELVSTLDIPVFGNGDIWGAEDAIAMVNETGCAGVAIGRGCQGRPWLF 279 Query: 235 REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRI--ARKHVSWYLQEHAP 292 I + ++ L EV R++ H L +FY + + RKHV+WYL+ Sbjct: 280 GNIGNAFAGSDVRINPTLGEVGRIIMRHAELLTEFYDGDERMAVHDLRKHVAWYLKGFPV 339 Query: 293 NDQFRRTF---NAIEDASEQLEALEAYFE 318 RR F +++D EQ++AL+ E Sbjct: 340 GGSTRRAFMECESLKDVREQVDALDPNIE 368 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 162/287 (56%), Gaps = 1/287 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G ++ + + APM+G TD PFR GA + ++EM++ + R+ Sbjct: 2 ISVGDVEINDAVFLAPMSGATDAPFRRQASRFGAPVVITEMIAGSELATGRQDMVWRITK 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+AG DPK M +AARI+ +GA IIDINMGCP+++V +G+AL++ D+ Sbjct: 62 PENTFPFVVQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDLDL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + ++ +PV++K+R GW + N +A++ E+ ++ +T+HGRTR + G+ Sbjct: 122 ARELIIAAREGGGLPVSVKMRLGWDDDTLNAPALAKICEEEHVKLITVHGRTRCQFYTGK 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+++ ++ VK ++P+I NGDI A+ + + AD +MIGRAA GRPW+ +I Sbjct: 182 ADWNKVKEVKLASNLPLIVNGDIDSSKTAKQAILLSQADGVMIGRAALGRPWLLGKIASD 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL 287 L + P +E LC V + YG G R+ RKH++ ++ Sbjct: 242 LANRPYIEP-TWSEKLSSLCEQVSDSVLLYGDRLGVRVFRKHLAAFI 287 >UniRef50_B0SXE6 TIM-barrel protein, nifR3 family n=2 Tax=Caulobacteraceae RepID=B0SXE6_CAUSK Length = 335 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 126/325 (38%), Positives = 187/325 (57%), Gaps = 10/325 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G+ ++ R+ APM G++D PFR +GA +EM++ + R Sbjct: 5 LSVGKVEVPGRVWIAPMTGVSDLPFRETATRLGAAYVATEMVACAEFARGRPDAVRRAAV 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLA-GSALLQYPD 119 D + VQ+ G DP M AR+ E+GAQIID+N GCP+K+V +A GSAL++ PD Sbjct: 65 GDGLPLMVVQLVGRDPTFMGQGARMAAEAGAQIIDLNFGCPSKQVTGGVASGSALMREPD 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + ++++ V AVDVPVT+K+R GW + RN +IA+ A D G QA+T+HGRTR + G Sbjct: 125 LAEALVAAAVRAVDVPVTVKMRLGWDDDSRNAADIARRAVDAGAQAITVHGRTRCQFYKG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ ++ AVK VS+PV+ NGDI D AR L+ +GAD +MIGR GRPWI + I+ Sbjct: 185 VADWSAVAAVKAAVSVPVLVNGDIIDGDTARLALEQSGADGVMIGRGVYGRPWIAQAIEA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP---NDQF 296 L+ GE E + H R FYG G ++ RKH++ Y+ E AP +++ Sbjct: 245 ALN-GEGFREPDAEERLAIAVTHFRRSLGFYGQNLGLKMFRKHLASYI-EAAPWPDSEEL 302 Query: 297 RRTFNA----IEDASEQLEALEAYF 317 RRT A +ED + + L A + Sbjct: 303 RRTARAALCRLEDPAAIEDGLAALW 327 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/248 (41%), Positives = 148/248 (59%), Gaps = 13/248 (5%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE--- 63 + +R APMAG++D R C +MGAGL V+E S + + + ++ + M I E Sbjct: 4 KFSSRAFLAPMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEEQLKENMKTIQEFIE 63 Query: 64 ------PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 P +VQ+ GSD + AA I VE IID NMGCPA + +++AG ALLQ Sbjct: 64 FSEQERP--ISVQLFGSDLYALEKAATI-VEPYFDIIDYNMGCPAPHITQQMAGGALLQE 120 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNC-EEIAQLAEDCGIQALTIHGRTRACL 176 ++ + I +VNAV PVTLKIR+G + +IA++AED GIQ +T H RT + Sbjct: 121 VNLTQQIFETLVNAVKKPVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPRTVSQG 180 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 ++G A++ I+ +K+ +IPV+ NGDIT P A+ +LD TG D +MIGR A G P++F + Sbjct: 181 YSGSADWKLIKELKEISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGRGAMGNPFLFEQ 240 Query: 237 IQHYLDTG 244 I YL TG Sbjct: 241 INDYLKTG 248 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 13/316 (4%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHI 61 +G + +I +PMAG+T+ PFR LC + G GL V+EM+++ V + K+ LR+ Sbjct: 48 LGNVHVGTPVILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKA-LRLCRF 106 Query: 62 -DEPGIRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 IR++Q+ G +P M AA+I V E A +D+N GCP KV R+ GSAL D Sbjct: 107 APSERIRSLQLYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTD 166 Query: 120 VVKSILTEVVNAVD---VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 + +++ VV D +PVT KIR G EH E +A++ G +A+T+H RT A Sbjct: 167 LFTDVVSRVVRVCDAAGIPVTAKIRVGIDHEHETFHEAGHIAQEEGCKAVTLHARTTAEY 226 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + G +++ I + +++ +PV NGDI A A+++ TG + IGR QGRPW+F + Sbjct: 227 YGGHSDWSRIGELVEQLDVPVFGNGDIWGAADALAMVEQTGCAGVAIGRGCQGRPWLFAD 286 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA----RKHVSWYLQEHAP 292 I+H + L +V +++ H L +FY + R+A RKHV+WYL+ Sbjct: 287 IKHAFAGSDERTDPTLGQVCQVIMRHATYLTEFYDGDE--RMAAHDMRKHVAWYLKGFPV 344 Query: 293 NDQFRRTFNAIEDASE 308 RR F A E ++ Sbjct: 345 GGGVRRAFMACESLAD 360 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/313 (33%), Positives = 168/313 (53%), Gaps = 12/313 (3%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT- 68 N + APMAGITD FRT ++ A + V+E++S++ ++SD++ L+++ DE Sbjct: 10 NPFVLAPMAGITDHAFRTFIKKLDASVVVTELVSASGIEYKSDRT-LKLMSFDESQRPIG 68 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q+ G +P+ +A AA++ G +D+N GCP KV +K AGSA+L+ P V+ +++ V Sbjct: 69 IQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVSTV 128 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 A+ +P+T+KIRTGW RN EI +A + G+ + IHGRTRA + G A++D I Sbjct: 129 KAAIKIPLTIKIRTGWDANSRNATEICNIAYNEGVSWVAIHGRTRAQSYTGLADWDFIAD 188 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 VK IP++ NGDI P +A L +G D +MIGR P+IF +D L Sbjct: 189 VKANTKIPILGNGDILTPRQANLRLQQSGCDGVMIGRGCLKNPFIF------MDALSLWR 242 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIA----RKHVSWYLQEHAPNDQFRRTFNAIE 304 P+ +VKR + + L I RK +W+ ++ QFR+ + Sbjct: 243 GEPIKDVKRDYVSLFQGLQKEIVAHCDEHITGIQLRKFAAWFSTGYSGAAQFRKNLFQSK 302 Query: 305 DASEQLEALEAYF 317 E + +F Sbjct: 303 SNDEIMALANEFF 315 >UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacteria RepID=A7I0T0_CAMHC Length = 310 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/320 (38%), Positives = 175/320 (54%), Gaps = 20/320 (6%) Query: 6 YQLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + +N L AP+AG +D P R++ G TVSEM+S+N V+ S+KS L+M+ E Sbjct: 2 FSFKNHPLFLAPLAGFSDLPLRSVVKRFGCDATVSEMISANALVFCSEKS-LKMIKKSEN 60 Query: 65 GI-RTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 VQIAGSDPK + A I N G ID+N GCP KV R+ AGSALLQ D++ Sbjct: 61 ETPYFVQIAGSDPKIIKQAVEILNKIDGIDGIDLNCGCPVPKVVRQNAGSALLQNLDLL- 119 Query: 123 SILTEVVNAVDVP--VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 S L E++ + K+R G+ + +N IA ++ G + +H RTRA ++ + Sbjct: 120 SKLIEIIKKTSNKKYTSAKVRLGF--DTKNPVNIALAVQNAGADFIAMHARTRAGGYSAK 177 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI--Q 238 +Y++I A K V IP+IANG+I A +L+ T ADALMIGRA G PW+F EI Q Sbjct: 178 PDYEAIAAAKSAVKIPLIANGNINSQ-NANQILNLTKADALMIGRATIGNPWVFYEIKNQ 236 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 + E + K ++ AH E+ FYG G I RKH+ Y + +A FR Sbjct: 237 KTVAVDEKIK-------KEIILAHFDEMIKFYGD-HGAVIFRKHLHEYSKGYADATNFRC 288 Query: 299 TFNAIEDASEQLEALEAYFE 318 N I +A + + ++ +FE Sbjct: 289 EINTITNAEKMRDKIKQFFE 308 >UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX2_9PROT Length = 311 Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 168/309 (54%), Gaps = 13/309 (4%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 AP+AG TD PFR++ E G +T SEM+++N + ++K++ M + +QI Sbjct: 13 FFLAPLAGYTDLPFRSVVKEFGCDMTFSEMINANAIAFNNEKTKKMMQKSSKETPYFIQI 72 Query: 72 AGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALL--QYPDVVKSILTEV 128 A ++ + A I N IDIN+GCP K R G LL + + +K I++ + Sbjct: 73 AANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKEKLKEIVSAI 132 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 + V+ K+R G+ + A++ ED GI+ LT+HGRT ++ G A Y I+ Sbjct: 133 IKTSKKIVSAKMRLGY--NEVVAVDRAKMLEDLGIKFLTVHGRTVKQMYKGNANYKEIKK 190 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V ++V+IPVIANGDITD KA+ VL+YT A+ + IGR G+PWIF E++ GE+ P Sbjct: 191 VVKEVNIPVIANGDITDYKKAKEVLEYTEANGVAIGRGVIGKPWIFLEMKQ---QGEITP 247 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 + K ++ H + + ++YG G + RKH+ Y + +FR N+ E+ E Sbjct: 248 ----YQKKEVILTHFKAMIEWYGDY-GVILFRKHLHQYSKGIKNASEFRSKINSTENKDE 302 Query: 309 QLEALEAYF 317 + +E YF Sbjct: 303 VINLIEEYF 311 >UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepID=C0W327_9ACTO Length = 438 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 178/355 (50%), Gaps = 42/355 (11%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG--------------------------A 34 +RIG + + APMAG+T+ FR LC E G A Sbjct: 27 LRIGPITVGVPVELAPMAGVTNASFRRLCREQGESALPAHARPAAAGPLPTDDGGLLAPA 86 Query: 35 GLTVSEMMSSNPQVWESDKSRLRMVHIDEPG-IRTVQIAGSDPKEMADAARINVESG-AQ 92 GL V+EM+++ V +DK+ L MV D +R++Q+ G DP AARI VE A Sbjct: 87 GLYVTEMVTTRALVERNDKT-LAMVRTDPTERVRSIQLYGVDPVIAGKAARILVEEDLAD 145 Query: 93 IIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD-----------VPVTLKIR 141 ID+N GCP KV RK G+AL D++ +IL EVV + VPVT+K+R Sbjct: 146 HIDLNFGCPVPKVTRKGGGAALPWKKDLLHAILREVVRGAEEGVRLGRREREVPVTVKMR 205 Query: 142 TGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANG 201 G EH + A+ A+D G+ AL +HGRT + G+A++ +I +K+ IPV+ NG Sbjct: 206 IGVDEEHETYLDAARAAQDAGVAALALHGRTARQHYAGKADWSAIARLKEACRIPVLGNG 265 Query: 202 DITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP-LAEVKRLLC 260 D A ++ TG D +++GR QGRPW+F +I H L +G + P L V + Sbjct: 266 DTWTGSHALEMMRQTGCDGVVVGRGCQGRPWLFADIVHAL-SGSVERTHPDLDAVIATIR 324 Query: 261 AHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEA 315 AH R L G +G R RKH+ WYL+ + Q R + +E LEA Sbjct: 325 AHARLLAAELGEDRGVRDLRKHIGWYLKGYPVGGQARGDLMKVSSLAELDAGLEA 379 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 115/315 (36%), Positives = 163/315 (51%), Gaps = 6/315 (1%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKS-RLRMVH- 60 G L R + +P+AG T+ PFR + +E+G GL ++++++ + S+K+ RL H Sbjct: 42 GPLVLPFRTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKTLRLIATHP 101 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ID P VQI G + M DAA++ G IDINMGCP KV + AG++L+ + D Sbjct: 102 IDRP--FAVQIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADA 159 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ VV AV VPVT+K+R GW A+ E G+ A+ IHGRTRA F+G Sbjct: 160 ATELVKAVVEAVHVPVTVKMRLGWDASQLTAPRFAREFEQVGVAAVAIHGRTRAQGFSGT 219 Query: 181 AEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 D IR V + V SIPVIANGDI A A+ D TG A+ IGR A PWIFR++ Sbjct: 220 VNRDGIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIFRQLTE 279 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + TG+ P + L+ R L ++ G RK WY + R Sbjct: 280 WETTGDWAPAGSFNDRLLLMRRQFRYLQEWVGEETAVSAFRKMSHWYTKAMRVGPALRHA 339 Query: 300 FNAIEDASEQLEALE 314 + + E +AL+ Sbjct: 340 VQSAKTGEEFEQALQ 354 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 106/312 (33%), Positives = 163/312 (52%), Gaps = 2/312 (0%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHID 62 G QL +R + +P+AG T+ PFR + E+G GL ++++++ + S+K+ Sbjct: 22 GALQLESRYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCP 81 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 E VQI GS+P++M DAA++ G IDINMGCP ++ + AG++++ P Sbjct: 82 EDSPFAVQIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTV 141 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 S++ VV AV +PV++K+R GW + ++ E G+ A+ IHGRTR F G Sbjct: 142 SLVQTVVEAVKIPVSVKMRLGWDDSELSAPFFSREFEKVGVVAVAIHGRTREQGFRGVVN 201 Query: 183 YDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 +D IR V + V SIPVI NGD+T+ +A +L TG + IGR A PWIFR++ + Sbjct: 202 HDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPWIFRQLVQWE 261 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 TG PP + LL R L + + + RK WYL+ R F Sbjct: 262 QTGTYDPPGNFDDRLELLLRQFRYLLEMTTEKRAISMFRKMGHWYLKSMRVKPAMRHEFQ 321 Query: 302 AIEDASEQLEAL 313 + E +A+ Sbjct: 322 LASNLDEFGQAV 333 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 119/347 (34%), Positives = 183/347 (52%), Gaps = 33/347 (9%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEM--GAGLTVSEMMSSNPQVWESDKSRLRM 58 +RIG + + ++ APMAGIT+ PFRTLC E G GL VSEM+++ V E ++ +++ Sbjct: 16 LRIGPHTVAPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALV-ERNEKTMQL 74 Query: 59 VHIDEPGI-RTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQ 116 +H D R++Q+ G DP + A R+ E G A ID+N GCP KV RK GSAL Sbjct: 75 IHFDATETPRSIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPY 134 Query: 117 YPDVVKSILTE-VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 ++++I+ E V A D+PVT+K+R G +H + ++A + G+ A+ +HGRT A Sbjct: 135 KRHLLRAIVREAVTGAGDLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTAQ 194 Query: 176 LFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 + G A++D+I +K+ V IPV+ NGDI A ++ TG D +++GR GRPW+F Sbjct: 195 HYGGTADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRPWLF 254 Query: 235 REIQHYLD--TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA------------- 279 ++ + T + P L EV ++ H L ++ R A Sbjct: 255 ADLVAAFEGRTDSFVRPT-LREVADVMVRHATLLGEWIENGGTARRATVEGGGGRREGEA 313 Query: 280 ------RKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 RKHV+WYL+ A + R+ + LEAL A + Sbjct: 314 RGVIDFRKHVAWYLKGFAVGSEMRKRLA----VTSSLEALRAGLDEL 356 >UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia profundicola AmH RepID=B9L781_NAUPA Length = 313 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 13/309 (4%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 AP+AG TD PFR++ + G +T SEM + N ++++K++ M VQI Sbjct: 13 FFLAPLAGYTDLPFRSVVKKFGCDMTFSEMTNVNAIAYQNEKTQKMMEKSPLENPYFVQI 72 Query: 72 AGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALL--QYPDVVKSILTEV 128 A ++ + A I N + IDIN+GCP K R G LL + D +K ++ + Sbjct: 73 AANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDENRDFLKEVVGTI 132 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 V PV+ K+R G+ + E+ A+L ED GI LTIHGRT ++ GEA+YD I+ Sbjct: 133 VKTSKKPVSAKMRIGF--DKSVVEDRAKLLEDLGIVFLTIHGRTVKQMYKGEADYDEIKK 190 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V IPVIANGDITD KA+ VL+YTGA + IGR A G+PWIF E++ + Sbjct: 191 GVNAVKIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKPWIFLEMKQQGN------ 244 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 + + K ++ H ++ +YG G + RKH Y + +FR N ++D Sbjct: 245 -ITSEQKKEVILEHFNQMVYWYGEY-GVILFRKHAHAYSKGIPKASEFRSKMNEVKDPEV 302 Query: 309 QLEALEAYF 317 + +E YF Sbjct: 303 ARKLIEEYF 311 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 179/352 (50%), Gaps = 39/352 (11%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFR------TLCYEMGAG----------------LTV 38 M IG + + APMAG+TD FR +L E GAG L + Sbjct: 23 MDIGGVVVAPATVLAPMAGVTDTVFRRFIRNASLFAEGGAGAANVDREVTNQQSGCGLIM 82 Query: 39 SEMMSSN--PQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDI 96 +E S++ ++ ES + R + DE I Q+ GS+P+ +A+ ARI ++G ++D+ Sbjct: 83 TEFTSADGLSKMRESKRKRYLTFYEDEHPI-AAQLFGSNPETLAEGARIVEDTGFDMVDL 141 Query: 97 NMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQ 156 N+GCPAK+V GS LL+ ++ I V AV +P T+K R GW +H C +A+ Sbjct: 142 NLGCPAKRVVACNGGSGLLRDLPLIAKIFEAVRGAVKIPFTVKFRLGWNDQHIICVPLAR 201 Query: 157 LAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYT 216 LAE+ G+ A+++H RTR ++G+A ++ I VK V IPVI NGD+ P A A++ T Sbjct: 202 LAEESGLNAVSLHARTREQGYSGQARWEHIAEVKDAVRIPVIGNGDVRTPEDACALVAKT 261 Query: 217 GADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKR---------LLCAHVRELH 267 G D +MIGRAA PWIFR+I Y TG P +E R +L RE Sbjct: 262 GCDGVMIGRAAPANPWIFRQIAQYTATGRYDEP---SEADRYQMIRTYFEMLLDEGREDE 318 Query: 268 DFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFEN 319 A+G ++ SW+ R++ + + L+A+E +FE Sbjct: 319 HASRAAEGK--MKQFASWFTHGVPGGAGLRKSIYEAKTGPKILDAVERFFET 368 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 120/318 (37%), Positives = 168/318 (52%), Gaps = 14/318 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG + L+AAP+AG +D PFR LC E GAGL SEM+S + V + + Sbjct: 4 LLIGPLSILPPLVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLAT 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +Q+ G++P+ M +AA I IDINMGCP +KV +K AG+AL++ P++ Sbjct: 64 TAAERPLLMQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPEL 123 Query: 121 VKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +I V A D+PVT+KIR+GW + N + A+L G A+TIH RT + F G Sbjct: 124 AAAITGAVTAAAGDLPVTVKIRSGWNHKQINAPDFARLLVAHGAAAVTIHARTWSDGFTG 183 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ I AVK+ VS+PVI NGDI +A A++ TG D +MIGR A G PW+F Sbjct: 184 RADWAVIAAVKRAVSVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVFTP--- 240 Query: 240 YLDTGELLPPLP--LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 E PPL LA +R L EL + PA R + Y ++ + R Sbjct: 241 ---GAEQNPPLAQRLAAARRHL-----ELIRHWRPADNPARVRNQLGRYFKKIPGGARLR 292 Query: 298 RTFNAIEDASEQLEALEA 315 R + +QLE L A Sbjct: 293 RQIYDHNGSIDQLEQLLA 310 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 161/297 (54%), Gaps = 7/297 (2%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 QL +R++ +P+AG+TD+ FR L L +EM+++ ++ + +E G Sbjct: 34 QLHSRVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELGHGYGKMDDLKAEE-G 92 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ P MA AAR ++GA +IDINMGCP +K+ +K GS L++ P++ IL Sbjct: 93 PIAVQLFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQIL 152 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 VV+AV +PVT+K R GW + + ++ G Q LT+HGRTR F G+A +++ Sbjct: 153 EAVVDAVSIPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLHGRTREQGFKGQANWNA 212 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I VKQ ++IPVIANGDI P A L+ TGAD +M+GR G PW+ +I+ Sbjct: 213 IAEVKQALTIPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLVGQIEAAF-MNR 271 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGP--AKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +P P + + L +LHD + G IARKH+SW Q R + Sbjct: 272 PIPATPDSGARLHLAK--EQLHDLVSSRGSHGLLIARKHMSWTCTGFPGAPQLRHSL 326 >UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinobacteridae RepID=D2RA64_GARVA Length = 384 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/324 (33%), Positives = 173/324 (53%), Gaps = 12/324 (3%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHI 61 +G+ + ++ +PMAGIT+ PFR +C E G GL V+EM+++ V + K+ LR+ Sbjct: 10 LGKVHIATPVVLSPMAGITNWPFRVICREFGPDGLYVAEMITARALVARNPKA-LRLCRF 68 Query: 62 -DEPGIRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +R++Q+ G +P + A RI V E+ A +D+N GCP KV R+ GSAL D Sbjct: 69 APSEKVRSLQLYGVNPSIVEQATRIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKTD 128 Query: 120 VVKSILTEVVNAVD---VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 +++ IL VV+ + +PVT K R G H + +A++ G A+T+H RT A Sbjct: 129 LLQEILHRVVSVCEPAGIPVTAKFRVGIDENHETFIQAGHIAQEEGCAAVTLHARTTAEY 188 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + G +++ I + + + IPV NGDI A A+ TG + IGR QGRPW+F + Sbjct: 189 YGGHSDWQRIGELVETLDIPVFGNGDIWGAEDALAMFKETGCAGVAIGRGCQGRPWLFAD 248 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRI--ARKHVSWYLQEHAPND 294 I++ + + LAEV ++ H+ L +FY + + RKH++WYL+ Sbjct: 249 IRNACEGSDNRVNPTLAEVGSVILRHLNLLVEFYDGDERMAVHDLRKHIAWYLKGFPVGG 308 Query: 295 QFRRTF---NAIEDASEQLEALEA 315 R+ F +IED L+ L+ Sbjct: 309 GTRKAFMECESIEDVQRNLDMLDG 332 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 11/311 (3%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 L + L AP+AG+TD PFR LC E+GAGL +EM+S+ ++ K++ + Sbjct: 2 NLNSNLFLAPLAGVTDIPFRILCGELGAGLCFTEMISAKGLYYDDKKTKKLLDTDPREKS 61 Query: 67 RTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 +VQI G +P+ +A A R E+ + IDINMGCPA K+ + GSAL+ ++ + ++ Sbjct: 62 TSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAEDVI 121 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 N D+PV++K R G N ++AQ+ E + +T+H RTR ++GEA++ Sbjct: 122 RACKNNTDLPVSVKFRLGIDENSMNYMQLAQICERLKVDYITLHARTRKMFYSGEADWLH 181 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I+ V + V IPV NGD R ++Y+ D +++ R A P+IF + ++ Sbjct: 182 IKRVVENVDIPVFGNGDCFTKEDIRKNMEYSNCDGVLLARGAMQNPFIFSDDENK----- 236 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 EV + H++ +FY + RKH+ WYL+ +++ + N + D Sbjct: 237 -----SKEEVIDTIKKHMQLKLEFYEERRAILEMRKHIQWYLKGFRNSNKVKNKINQLTD 291 Query: 306 ASEQLEALEAY 316 E + L+ + Sbjct: 292 LDEIYKILDEF 302 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 162/288 (56%), Gaps = 8/288 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSR--LRMV 59 IG+ Q+ +R AP+AG T RPFR E+G GL ++++ + + + S+ + Sbjct: 42 IGRRQIPSRYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAVKLLSNNAFSQQLIATS 101 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +D+P +VQ+ G+DP +A AAR + G + +D+NMGCP KVN + G+ L+ P Sbjct: 102 LLDQP--LSVQLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDPT 159 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ VV +V +PVT+K+R GW + + +A+ E+ G A+TIHGRTRA F+G Sbjct: 160 GATRLVALVVASVSIPVTVKMRLGWDAQSLSAPLLARQFEEVGAAAITIHGRTRAQGFSG 219 Query: 180 EAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 + + I A V SIPVI NGD+ A ++ TG A+ IGR A PWIFR++ Sbjct: 220 KVSREGIAATVAAVQSIPVIGNGDVRTVEDAISMRRETGCAAVAIGRGAMLDPWIFRKLH 279 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWY 286 + TG+ P P +++ L H RE+ D +G + R+ RK WY Sbjct: 280 DFEMTGQYAEPGPEEQIQ-FLVTHFREMVDLFG-EQATRLFRKFAGWY 325 >UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES4_ELUMP Length = 318 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 12/303 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG + +N L+ APMAGITD PFR C GAG+ +EM+S+ +++ KS ++M+ Sbjct: 8 ITIGSFAAKNNLMLAPMAGITDTPFRIHCLNNGAGIVCAEMVSAKAVEYDNKKS-VKMLA 66 Query: 61 IDE---PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 +D+ P ++QI G D + ++ AA+ +GA IIDIN GCP KK+NR AG L++ Sbjct: 67 VDKKEHP--VSMQIFGGDAESISIAAKAAEAAGADIIDINAGCPVKKINRAGAGCVLIKD 124 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 ++ SI+ VN+V +PVTLK R G ++IA+LAE+ G A+ +H R + Sbjct: 125 EKLLASIVNAAVNSVSIPVTLKTRIGLTAGDFKGDKIAKLAENEGAAAVIMHARYAGNVH 184 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G A+ +++ V V IPVI NG I D A + + TG +M+GR A G IF+ I Sbjct: 185 GGPADLEALAKVVSAVKIPVIGNGGIVDVNTADKMFE-TGVRGIMVGRGAIGNINIFKSI 243 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 + D EL P E ++ +++ +FYG G +RK V ++++ + R Sbjct: 244 INGCDI-ELNPK----ENVKIFFNLIKQNVNFYGEKNGIARSRKTVGFWIKGFPMAGEIR 298 Query: 298 RTF 300 F Sbjct: 299 GEF 301 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 164/320 (51%), Gaps = 11/320 (3%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 + + ++ N ++ APMAGITD FR +C E G T +EM+S N + + + M Sbjct: 1 MSETKIFNEIMLAPMAGITDSAFRQICEENGCDKTFTEMVSVNALDFNNRATEEIMYTAY 60 Query: 63 EPGIRTVQIAGSDPK--EMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +QI G D E +IN + I NMGCPA K+ GSAL++ Sbjct: 61 SEKNCNIQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKK 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V I + + D V +KIR G + N E+ + ED GI + +HGRTR ++G+ Sbjct: 121 VYEIGKCLKESTDKIVNVKIRMGIDDDSVNYIEVGKALEDSGIDYVILHGRTRKQQYSGK 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A + +IR +K+ +SIPVIANGD+ + +LD TGAD +MI R A G P+IFR+I+ Y Sbjct: 181 ANWQAIRKLKETLSIPVIANGDVFSVKDYKDILDETGADGVMIARGAMGNPFIFRQIKDY 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA----RKHVSWYLQEHAPNDQF 296 + G+ P+ ++ A ++ ++ K ++ RKHV WY++ + Sbjct: 241 I-QGKETSPISYEDI----LATIKRQYELSLKYKKEKLVINQMRKHVGWYIKGLPQAASY 295 Query: 297 RRTFNAIEDASEQLEALEAY 316 R N ++ + E + LE Y Sbjct: 296 RDRVNKLKTSEEIFDLLEEY 315 >UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCCF0E Length = 429 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 119/376 (31%), Positives = 180/376 (47%), Gaps = 61/376 (16%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-------------------------- 34 +R+G + ++ APMAG+T+ FR LC E GA Sbjct: 10 LRLGDLTVDVPVVLAPMAGVTNAAFRQLCAEQGALRGSQARTSGQALRGSQARTSGQALR 69 Query: 35 ----------------------GLTVSEMMSSNPQVWESDKSRLRMVHI-DEPGIRTVQI 71 GL V EM++S V E D++ L M+ +R+VQ+ Sbjct: 70 GSQARTSGQALRGSQARTSGQAGLYVCEMITSRGVV-EGDRTSLGMLTFAPNERVRSVQL 128 Query: 72 AGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 G DP + A I + G +D+N GCP KV RK G+AL ++ ILTE V Sbjct: 129 YGIDPATVGRAVAILCGDHGVDHVDLNFGCPVPKVTRKGGGAALPWKATLLGRILTEAVA 188 Query: 131 AV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 A VPVT+K R G +H + +AED G A+ +HGRT ++GEA++ +I Sbjct: 189 AAAPFGVPVTMKTRKGIDDDHLTYLDAGHIAEDSGCAAIALHGRTAVQHYSGEADWAAIA 248 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 A+K VSIPV+ NGD+ + A ++ TG D +++GR GRPW+FR++ E + Sbjct: 249 ALKAAVSIPVLGNGDVWEAADALRMVRETGCDGVVVGRGCLGRPWLFRDLAAAFTGEETV 308 Query: 248 PPLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR------TF 300 P LP L EV ++ H L + G +G RKHV+WYL+ R+ ++ Sbjct: 309 PALPTLGEVMAIMRRHAELLGGWLGEERGCVEFRKHVAWYLKGFPAGPSVRQRLGQVSSY 368 Query: 301 NAIEDASEQLEALEAY 316 A+++ +L+ EA+ Sbjct: 369 AALDELLVELDPTEAF 384 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/315 (35%), Positives = 169/315 (53%), Gaps = 3/315 (0%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R ++ APM +TD FR + E+GA L V+E ++ + +R ++ D Sbjct: 14 RRPVVLAPMEDVTDAVFRRIGRELGAELCVTEFVNVEGLLRGCKTARRKLALADGDQPTA 73 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +QI G++P+ +A+AAR+ E+G +DIN GC K+ + AG+ L+ P+ + ++ V Sbjct: 74 IQIYGANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDPEAMVAMARLV 133 Query: 129 VNAVDVPVTLKIRTGWAPE-HRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 +V +PVT+K R GW PE H ++A+ ED G+ ALTIH RT +G A++ Sbjct: 134 TRSVALPVTVKTRIGWGPESHMPIVDLARRLEDAGVAALTIHCRTAQMGHSGAADWGWAA 193 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 ++ VSIPV+ NGDI A L TG +M+GRAA PWIFRE + LD G L Sbjct: 194 RAREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRAAIDHPWIFREARALLDDGVHL 253 Query: 248 PPLPLAEVKRLLC-AHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 PP P AE + LC AH+ + G G R+ R+H++ YL+ RR + Sbjct: 254 PP-PTAEERLALCRAHLIANTEARGEPHGVRVTRRHLTGYLRGLPGASALRRELLFCDSL 312 Query: 307 SEQLEALEAYFENFA 321 S L+ L++ + A Sbjct: 313 SGCLDILDSAAQRLA 327 >UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propionibacterium acnes RepID=Q6A959_PROAC Length = 411 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 165/323 (51%), Gaps = 8/323 (2%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE 63 G + ++ APMAG+T+ FR LC E GAGL V EM++S V+ K+ + + Sbjct: 44 GTVSVDTPVVLAPMAGVTNAAFRQLCAEQGAGLYVCEMITSRGLVYGDHKTHGMLAFAEC 103 Query: 64 PGIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSAL---LQYPD 119 +R+VQ+ G DP + +A I E G +D+N GCP KV RK G L L Sbjct: 104 EDVRSVQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKLDRFA 163 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 V S + +A VPVT+K R G PEH + A+ A D G A+ +H RT A + G Sbjct: 164 AVVSAAVQAGDAHGVPVTVKTRIGIDPEHITYIDSARAAVDSGAAAVCLHARTVAEAYAG 223 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + +D+I + + V +PVI NGDI + A A++ TG + +GR GRPW+FR++ Sbjct: 224 HSHWDAIGELVKTVDVPVIGNGDIWEASDAMAMVGQTGCAGVEVGRGCLGRPWLFRDLAD 283 Query: 240 YLDTGELLPPLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 G LP L EV ++ H L + G G RKH++WYL+ + R Sbjct: 284 AF-AGRDTTTLPTLGEVCAMIRRHAELLVKYQG-MHGLVDMRKHMAWYLKGFPVGGETRH 341 Query: 299 TFNAIEDASEQLEALEAYFENFA 321 I + ++L++L A ++ A Sbjct: 342 VLGQIS-SFDELDSLLATLDHDA 363 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 139/236 (58%), Gaps = 1/236 (0%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV-HI 61 + ++ ++ APMAG+TD FR + +G VS M++ V R R++ ++ Sbjct: 19 VAYIKIEPNIVLAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYL 78 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 E T+QI+G+DP +A+AAR+ + GA IIDIN GCP+ KV GSALL+ + Sbjct: 79 PEERPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKM 138 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + +L V AV +PVTLK+R GW N E Q AE G+ ALT+H RTR + G+A Sbjct: 139 ERLLRAVRAAVQIPVTLKLRAGWDEASLNFIEAGQRAEAAGVAALTLHPRTREQGYKGQA 198 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 ++ + A+K+ VSIPVI +GD+ A L +GAD +MIGR A PWIFR++ Sbjct: 199 DWSRVAALKRAVSIPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIANPWIFRQV 254 >UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacteraceae RepID=D1AZV6_SULD5 Length = 312 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 170/314 (54%), Gaps = 23/314 (7%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH---IDEPGIRT 68 L AP+AG TD PFR++ + GA +T SEM+S+N ++S+K+ +M+ ++ P I Sbjct: 12 LALAPLAGFTDLPFRSVVKKFGADVTFSEMISANALRFKSEKT-FKMLTKSPLEIPYI-- 68 Query: 69 VQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQI GSD + +A I N G ID+N GCP K+ + AGS+LL D ++ ++ Sbjct: 69 VQIVGSDLTSIKEAVLILNDMEGIAGIDLNCGCPVPKMVAQEAGSSLLLNLDHMQRVIET 128 Query: 128 VVNAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + + T K+R G+ + E IA+ E+ G +++HGRTR+ + E +Y +I Sbjct: 129 IKTYSNKRYTSAKVRLGFNT--KIPELIAKACENAGADFMSMHGRTRSGAYKAEVDYQAI 186 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ---HYLDT 243 + V IPVIANGDIT KA V+ TG LMIGR A G PWIF +++ H+++ Sbjct: 187 AEARAAVKIPVIANGDITSLEKALHVMSVTGCKNLMIGRGALGNPWIFYQLKNGLHHVEK 246 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAI 303 ++L ++ H + +FYG KG I RKH+ Y + +FR N I Sbjct: 247 TKIL---------EIVLEHYDAMVEFYGE-KGVSIFRKHLHTYSKGFREASEFRDKINRI 296 Query: 304 EDASEQLEALEAYF 317 ED EA+ +F Sbjct: 297 EDKVLMREAIAHFF 310 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 98/325 (30%), Positives = 168/325 (51%), Gaps = 9/325 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMV 59 + IG L++ ++ AP+AG +D P+R + G L EM+ + ++ L+++ Sbjct: 5 IHIGNILLKSPIVYAPLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSPSRT-LKLL 63 Query: 60 HIDEPGIRTV--QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 E +R + Q+ GS P+ +AA++ G +ID+N GCP ++ + +GS LL+ Sbjct: 64 EYSE-SMRPIGGQLCGSKPEMAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKT 122 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 P+++ +L +++ +V +PVT+KIR+GW + N EE ++ ++ G A+ +HGRTRA + Sbjct: 123 PELIGKVLEKIIGSVSIPVTVKIRSGWDGNNINVEETVRIIKEAGASAVFVHGRTRAQGY 182 Query: 178 NGEAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 G + + I K PV NGD+ P A+ +LD TG D +++ R G PWI R Sbjct: 183 VGPSNLEYIARAKAAAGKDFPVFGNGDVFSPEAAKLMLDSTGCDGVLVARGTMGAPWIAR 242 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY-GPAKGYRIARKHVSWYLQEHAPND 294 +I+ YL TG +P + K+ H+ + ++Y AK RK YL A Sbjct: 243 QIEDYLTTGT-YQKMPFSTRKQAFLQHLHWVEEYYQSEAKFLCETRKLCGHYLISAAKVR 301 Query: 295 QFRRTFNAIEDASEQLEALEAYFEN 319 R + + +EAY E+ Sbjct: 302 FLRSALSKATSVQAVYQLIEAYEES 326 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 100/258 (38%), Positives = 144/258 (55%), Gaps = 7/258 (2%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNP--QVWESDKSRLRMVHIDEPGIRTV 69 L APMAG+TD FRT+C E+G + V+E +S+ Q WE ++ ++ + P + Sbjct: 19 LFLAPMAGVTDPIFRTICKELGVDVMVTEFVSAEGILQAWERNRRYTKIENAHRP--IGI 76 Query: 70 QIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q+ G+D M +AARI ++ IDIN GCP KV K GS+LL+ ++ S+ V Sbjct: 77 QLFGADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLLKDLPLLASVAGGV 136 Query: 129 VNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 V AV +PVT KIR GW + + +L E+ GI +TIHGRTR+ ++G A +D I Sbjct: 137 VKAVGERIPVTAKIRIGWDFQSLCAMDACRLLENEGISMITIHGRTRSQQYSGTANWDII 196 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + +S+PVI NGDI+ P V + T +MIGRAA PWIF + ++YL G + Sbjct: 197 DECARAMSVPVIGNGDISTPQAVAYVKENTAVSGVMIGRAAMENPWIFGDAKYYLLHGTM 256 Query: 247 LPPLPLAEVKRLLCAHVR 264 P E L+ H R Sbjct: 257 PPARDPQEKAALILRHAR 274 >UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Planctomycetaceae RepID=D2R6Z1_9PLAN Length = 345 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 165/326 (50%), Gaps = 13/326 (3%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKS-----RL 56 IGQ ++ ++ APMAG T+ +R + E G AGL +EM++++ W + RL Sbjct: 6 IGQVKVDPPILQAPMAGYTNYAYRQMVREFGGAGLQATEMVNASGFAWLHEHEAEHPDRL 65 Query: 57 RMVHIDEPGIRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVNRKL-AGSAL 114 V +E VQ+ +DP +A R+ E ++DIN GCP K V K +GS L Sbjct: 66 WGVK-EEARPLAVQMWDNDPATLAKVGERLANELHVSVVDINFGCPVKDVTEKAHSGSYL 124 Query: 115 LQYPDVVKSILTEVVNA-VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR 173 L++PD + I+ VV A PVT KIR G + + N EIA++ E G ALT+HGRT Sbjct: 125 LKFPDRIAQIVERVVKACAPTPVTAKIRLGCSRDAINAIEIAKVVESAGAAALTVHGRTA 184 Query: 174 ACLFNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 A F G A+++ I +K + IP+I NGD+ P K G D +MI RA+ GRPW Sbjct: 185 ADFFRGTADWNRIAEIKPHLKKIPLIGNGDLDSPEKVIEAFRRYGVDGVMIARASMGRPW 244 Query: 233 IFREIQHYLDTGELLPPLPLAEVKRL-LCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA 291 +FR+ L GE +PP P AE +RL + H +G KG + RK Y Sbjct: 245 LFRQAAAAL-RGEPVPPDPTAEEQRLTMLRHYELTCARFGEQKGTLLMRKFACNYATGRP 303 Query: 292 PNDQFRRTFNAIEDASEQLEALEAYF 317 FR + + +E YF Sbjct: 304 GARTFRAMVANVFTREDFFNVVERYF 329 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 161/314 (51%), Gaps = 22/314 (7%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG Q + + AP+AG TD FR LC++ GA TVSEM+S + + ++ + + Sbjct: 4 IGPNQFSSPFVLAPLAGYTDLSFRLLCHQFGADYTVSEMISCHGLFYNQQRTLEMLASLP 63 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 E + Q+ G++P MA A I + +IDINMGCP +KV +K AG+AL+ P++ Sbjct: 64 EERPVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAY 123 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 ++ VV+ D+PVT+K R G + N E + E G A+ +HGRTRA F+G A+ Sbjct: 124 DVIRSVVDNTDIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVHGRTRAQAFSGVAD 183 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ---- 238 I+ VK+ +SIPVI NGDI ++ TG D +M+GR A G PW+F+ Sbjct: 184 RGIIKEVKEALSIPVIGNGDILSYQDGLDMMAETGCDGVMVGRGALGNPWVFQASGKPAN 243 Query: 239 -HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 H L G L H+ + F + + + H+S Y ++ + + R Sbjct: 244 IHGLAAGAL--------------QHLLLMERFNPVERVLGLIKNHMSKYFKDMPGSSRLR 289 Query: 298 RTFNAIEDASEQLE 311 AI AS LE Sbjct: 290 ---TAIFTASSFLE 300 >UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AII6_SEBTE Length = 309 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 157/283 (55%), Gaps = 7/283 (2%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++I APMAGITD FR + YE + +EM+ N + + +++ ++ + G VQ Sbjct: 2 QIITAPMAGITDYSFRKILYEFSPDIIFTEMVDVNALKYSNQRTQDEILR--KAGNEAVQ 59 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I G+ ++ +A ++ +E G IDIN+GCP KK+ R GSALL D VK +L ++ Sbjct: 60 IFGNKNEDFLEAVKLLIERGFDHIDINLGCPVKKIIRAGKGSALLLESDFVKELLLKLKK 119 Query: 131 AV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 D+ +++KIRTG+ + E +LAE+ G+ + IHGRT+ L++G+A+++ I+ Sbjct: 120 EFRNDIKLSMKIRTGY-KNFSDPEYYVKLAEEYGLFQICIHGRTQEQLYSGQADWNIIKK 178 Query: 189 VKQK-VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 +KQK ++ +I NGD+TD + D D +M+ R G PW+ +E + Y TG Sbjct: 179 MKQKHKNVKIIGNGDLTDLKTIKEKTDSAKPDGIMLARGLLGNPWLLKEAKDYFKTGVFH 238 Query: 248 -PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE 289 + E+K L H+ + G + RKH+ WYL+E Sbjct: 239 ESEVGREEIKNTLIKHINYCIEDKGEIRANLDMRKHIFWYLKE 281 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 162/313 (51%), Gaps = 10/313 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDK--SRLRMVHIDEPGI 66 +N+LIAAP+AG+T PFR L + GL +EM+S ++D+ S L + D+P Sbjct: 17 KNKLIAAPLAGVTTPPFRKLLRKYFDGLIYTEMVSVEGVRRKADRTLSYLSITESDQP-- 74 Query: 67 RTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ GS P+ +A + + A+ +DINMGCP KKV + +G A+++ P I+ Sbjct: 75 IGVQLFGSKPEAYTEAIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVNSGKIV 134 Query: 126 TEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 A+ DVP+T+KIR GW ++ N E+ ++A + G +A+T+HGRT+ +F+G YD Sbjct: 135 AAAKKALGDVPLTVKIRLGWDKKNLNYNEMIKIAYEEGAEAVTVHGRTKTEMFSGVVNYD 194 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I K +P+I NGD+ D +L TG D +MIGR +PW+F I + D Sbjct: 195 LIADAKANAKLPIIGNGDVVDVATYEKMLA-TGVDGVMIGRGMMKQPWLFESILNGRDPS 253 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + L E+ + L VR + G +K++ W+L+ R Sbjct: 254 GYMTYDKLYELIKEL---VRNEKIYKGEMFFLETVKKYIVWFLKGMPGAAALRNKLYMCP 310 Query: 305 DASEQLEALEAYF 317 +E L+ YF Sbjct: 311 TETEMFVMLDEYF 323 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 162/318 (50%), Gaps = 14/318 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--RLRM 58 +R+G + + +PMAGI+D P+R + G+ + +E +S+ + KS R Sbjct: 2 VRVGNVIIEGDVALSPMAGISDSPYRQITKRFGSAFSYTEFVSTEQLKLGNAKSLDMFRF 61 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 V ++ P + QI GSD + +A+ I E IID+NMGC KV+ +G+ LL+ Sbjct: 62 VEMERPIV--FQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNI 119 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ + N ++PVT KIR GW N E ++ ED G+ A+++HGRT+A + Sbjct: 120 RLAGKMIEGIRNRTNLPVTAKIRLGWDANSLNYLETLKVLEDSGVSAISVHGRTKAMAYT 179 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A++++I +K + ++P+ NGD+ +A G D ++IGR A G PW+F + Sbjct: 180 GIADWNAIGEIKSRANVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRKAIGNPWVFGKTP 239 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA--RKHVSWYLQEHAPNDQF 296 P ++K ++ H+ + +FY + Y + RKH Y++ + Sbjct: 240 KQF--------FPWYQIKDVILEHLDLMLNFYPTSDDYALILFRKHFIKYIENIGFPEDT 291 Query: 297 RRTFNAIEDASEQLEALE 314 +R ++ +E + LE Sbjct: 292 KRLLLSVASVNEFKDTLE 309 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/315 (31%), Positives = 171/315 (54%), Gaps = 9/315 (2%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 ++ AP+AG+TD +R + E L +EM+SS+ +DK+ +++ + V Sbjct: 2 KKIFIAPIAGVTDYTYRGILEEFQPDLLFTEMVSSDALAALNDKTISQILRLRSGN--GV 59 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G D ++M +A+ + G + IDIN GCP K+V GSALL+ P+ +K IL + Sbjct: 60 QLFGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKIKEILFTLR 119 Query: 130 NAVD--VPVTLKIRTGW-APEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 ++ +++KIR G+ PE N +IA++AE+ G +T+HGRTRA L+ G A++ I Sbjct: 120 EQLEESTKLSIKIRVGYDRPE--NYLQIAKIAEEAGCSHITVHGRTRAQLYTGLADWSLI 177 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + +K+ V+IPVI NGDI A+ ++ +G D +M+ R G PW+ R+I+ L GE+ Sbjct: 178 KEIKEHVTIPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWLIRDIREMLQYGEV 237 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRI-ARKHVSWYLQEHAPNDQFRRTFNAIED 305 + + + H+ + + P + + RKH+ WYL+ + +++ N D Sbjct: 238 KTKVSTEDKIDMAIHHILKTEE-DNPQREFVFDVRKHICWYLKGIPHSAEYKNRINQSTD 296 Query: 306 ASEQLEALEAYFENF 320 ++ L+ E Sbjct: 297 YKAVVQLLQELKEKI 311 >UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE39_9ACTO Length = 411 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 119/359 (33%), Positives = 165/359 (45%), Gaps = 63/359 (17%) Query: 17 MAGITDRPFRTLCYEMG------------------------------------------- 33 MAG+TD PFR LC MG Sbjct: 1 MAGVTDVPFRRLCRIMGESGLPDHLRPVGIPSWAAESGEGATASSPKAPGESSNEPRHVT 60 Query: 34 -------AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG-IRTVQIAGSDPKEMADAARI 85 AGL V+EM++S V E++++ L MV D +R++Q+ G +P MA AA + Sbjct: 61 IPRVDAPAGLYVTEMVTSRALVEENERT-LEMVRPDPAERVRSLQLYGVNPAVMAKAATM 119 Query: 86 NVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD---------VP 135 VE ID+N GCP KV +K G+AL D+ ++ VV A D +P Sbjct: 120 LVERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRACDEAGERAGREIP 179 Query: 136 VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSI 195 VT+KIR G EH + A A+ G ALT+H RT+ + G A +D I +K + I Sbjct: 180 VTVKIRIGIDSEHETATDAALNAQKLGAAALTLHARTQNQHYAGHAHWDEIARLKDLLDI 239 Query: 196 PVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEV 255 PV NGD+ + A A+L+ TG D + +GR AQGRPWIFR+I G + P LAEV Sbjct: 240 PVFGNGDVFEAADALAMLEQTGCDGISVGRGAQGRPWIFRDIVAAYHGGSIPPGPSLAEV 299 Query: 256 KRLL-CAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEAL 313 ++ C + D + R RKH+ WYL+ A R + + E E L Sbjct: 300 VSVIECHAAWCVVDQGDEERALREMRKHIGWYLRGFAVGGPQRHALSMVSTLQELHERL 358 >UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinomycetales RepID=B8HFM3_ARTCA Length = 392 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 168/303 (55%), Gaps = 6/303 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +++G + +I APMAGIT+ FR LC E G G+ V+EM++S V + +S + H Sbjct: 17 LKLGPLTVDTPVILAPMAGITNSAFRRLCREYGGGMYVAEMVTSRALVERTPESLRIISH 76 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D+ +R+VQ+ G D + A R+ VE A ID+N GCP KV R+ GSAL D Sbjct: 77 DDDEKVRSVQLYGVDAGTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKID 136 Query: 120 VVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 + +I+ V ++P+T+K+R G +H + ++A D G+ A+ +HGRT A Sbjct: 137 LFTAIVQTAVREASKGNIPLTIKMRKGIDDDHLTYLDAGRIARDSGVAAVALHGRTAAQF 196 Query: 177 FNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 ++G+A++ +I +++ + IPV+ NGDI A ++ TG D +++GR QGRPW+F Sbjct: 197 YSGQADWSAIARLREALPDIPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGRPWLFG 256 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQEHAPND 294 ++Q + ++ L +V + H + + +G K R RKH++WY + + Sbjct: 257 DLQAAFEGSDVRHRPNLRQVAEGVYRHAELMVETFGDEGKALREIRKHIAWYFKGYVVGG 316 Query: 295 QFR 297 + R Sbjct: 317 ELR 319 >UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F94 Length = 338 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 131/230 (56%), Gaps = 1/230 (0%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 + APMAG+TD +R L E GA TV+E +++ ++ S L++ QI Sbjct: 14 IFLAPMAGVTDLAYRLLAKECGADFTVTEFTAASGLTRKNTNSWLKVETDPREKPFIPQI 73 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G D EMA + +E + +IDIN GCPA KV R AG+ALL+ PD V S++ + + Sbjct: 74 FGGDISEMAKTVGM-LEDRSDVIDINFGCPAPKVCRNDAGAALLRDPDKVVSMVRRCIES 132 Query: 132 VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 +VP+T+K+R G EI++ D G+ + +HGRT ++G A++D I+ + Sbjct: 133 TNVPITVKMRLGTGSGPNTALEISKRLADEGVMRICVHGRTLRQRYSGIADWDQIKEISN 192 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 V IPVIANGD+ D A L+ T A LMIGR A GRP IF EI+H + Sbjct: 193 SVDIPVIANGDVVDTKSAELCLEATNAGGLMIGRGAIGRPTIFHEIKHGM 242 >UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EC62_9ACTN Length = 347 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 103/280 (36%), Positives = 146/280 (52%), Gaps = 6/280 (2%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 + APMAG+TD +R +C GA L SEM+S + S+K+ ++ DE VQ+ Sbjct: 19 FLMAPMAGVTDPAYRIMCRRRGANLAYSEMVSVAGLAYASNKTWRLVLPADEEQQICVQL 78 Query: 72 AGSDPKEMADA-ARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 GS P++ A A A + G +IDINM CPA+KV K GSAL++ PD+ + I+ Sbjct: 79 FGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLAEKIVEAA 138 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 V A VPVT+KIR G+ E RN AQ+ E G A+ +HGR L+ G+A++ + Sbjct: 139 VGAAHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHGRCATQLYTGQADWSVVDE 198 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V V IPVI +GD+ A L +GA A+ I R G PW+F + + G +P Sbjct: 199 VADAVEIPVIGSGDVFSAEDAAEHLQGSGASAVFIARGIYGNPWVFGDARALALDGTPVP 258 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 E L H+ H+ P AR + SWYL+ Sbjct: 259 SRSSVERLEALREHLTLTHELL-PLMSR--ARTYASWYLK 295 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 129/243 (53%), Gaps = 2/243 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I + L +R + PMAG TD P R L + GAG TVSEM+SS V+ D + ++ Sbjct: 40 LKIREISLPHRAVFGPMAGFTDAPARRLMAQHGAGFTVSEMVSSRALVY-GDHKTVSLLK 98 Query: 61 IDEPGI-RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + G VQI G P+ M AA + +DINMGCPA K+ AGS L+ PD Sbjct: 99 AEPNGAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPD 158 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 I+ EVV PVT+K+R GW EH E A+ E G + +H RTR ++ Sbjct: 159 RCGRIVEEVVKNTSRPVTVKMRKGWDAEHVTAVECAKACEQAGAVLIAVHARTREQMYTP 218 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + I AVK V +PV+ NGDI A +++ TG D +MI RAA G PW+F + Sbjct: 219 GIDPSIIAAVKDAVHVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAALGDPWLFERVNA 278 Query: 240 YLD 242 L+ Sbjct: 279 ALE 281 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 159/320 (49%), Gaps = 12/320 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-------AGLTVSEMMSSNPQVWESDK 53 +RIG +L + ++ APMAG+T+ FR LC ++ +GL V EM+++ + Sbjct: 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 Query: 54 SRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGS 112 + + R++Q+ DP AAR+ G A ID+N GCP KV ++ G+ Sbjct: 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 Query: 113 ALLQYPDVVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIH 169 AL + I+ V A D+PVT+K R G H + ++AE G A+ +H Sbjct: 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 Query: 170 GRTRACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 RT A ++G A+++ I +KQ V +IPV+ NGDI D A A++ TG D ++IGR Sbjct: 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 Query: 229 GRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 GRPW+F E+ P L EV ++ H L +G KG R RKH++WYL Sbjct: 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 Query: 289 EHAPNDQFRRTFNAIEDASE 308 RR ++ E Sbjct: 313 GFPAGSALRRALAMVKTFDE 332 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 102/327 (31%), Positives = 171/327 (52%), Gaps = 12/327 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG L + L APM T PFR +C + GA L SE + + V E DK ++++ Sbjct: 1 MRIGNISLAHGLTLAPMEEHTSLPFRLICKQQGASLVCSERIDAK-DVAERDKRAIKLLS 59 Query: 61 I---DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 + P + QI+G+D ++ +AAR+ E G ++D+N CP +++ + G AL+ Sbjct: 60 TTSAERPAVG--QISGNDAAQIGEAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQ 117 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 P + ++ AV +PVT+K+RTG E AQ E G A+ +H R+ + Sbjct: 118 PQRIAELVAAAKQAVSIPVTVKLRTGPKAGEDTAVETAQRVEQAGGAAIILHARSVEQAY 177 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G ++ + VK+ VSIPV+ +G + P A + L+ +GAD + IGR G PWIF++ Sbjct: 178 LGGPDWQHVTRVKEAVSIPVLGSGGVRTPQDAISFLESSGADGVAIGRGCLGNPWIFQQA 237 Query: 238 QHYL-DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY-RIARKHVSWYLQEHAPN-D 294 + L + E++ P P AE ++L A V +FY R+AR + Y + P+ Sbjct: 238 RTLLFGSREIIEPSP-AERGKVLLALVEHEFEFYSAHLAQKRLAR--TACYFAKFLPDFA 294 Query: 295 QFRRTFNAIEDASEQLEALEAYFENFA 321 +F++ +AI++ ++ + +F A Sbjct: 295 EFKKEIHAIKNLAQFRTLVREWFRPVA 321 >UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129C Length = 333 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 103/314 (32%), Positives = 162/314 (51%), Gaps = 13/314 (4%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--RLRMVH 60 +G ++ NR++ AP+AGI + R GAGL VSEM+SS+ + ++K+ L VH Sbjct: 11 LGGVEIPNRVVLAPLAGIGNWFVRLQAKRYGAGLAVSEMVSSHAIHYGNEKTCTELLRVH 70 Query: 61 IDE-----PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALL 115 DE G ++Q+ G+DP M AA E+GA +ID+NMGCP KV + AG+AL+ Sbjct: 71 PDEWRAGAGGPVSIQLFGNDPDIMRSAAARAAETGANLIDLNMGCPVPKVCKTGAGAALV 130 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA-QLAEDCGIQALTIHGRTRA 174 + PD+ I +PVT+K+R G P RN E+A +L D GI L IH R + Sbjct: 131 KDPDLAVEIARAAAEGSGLPVTVKLRPGLRPGDRNGIELAYRLVADAGIAGLCIHPRHAS 190 Query: 175 CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 +G +Y+ + + +++ +PV+ +G + R V ++TGA+A+++ R + G PW+F Sbjct: 191 QQHSGRPDYELAKRLVEELPVPVLISGGLRSAELVREVFEFTGAEAVLLARGSLGNPWLF 250 Query: 235 REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPND 294 ++ GE L EV +L V L G + R RK WY+ Sbjct: 251 EQVLGD-RVGEPTREEILTEVDWILDRAVEHL----GEGRAARYLRKFYPWYVTRLGEGA 305 Query: 295 QFRRTFNAIEDASE 308 + + E +E Sbjct: 306 ELQDRLQRTETVAE 319 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 152/292 (52%), Gaps = 12/292 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSR--LR 57 ++IG L +R AP+AG T FR E+G GL ++++ ++ + S KS+ L Sbjct: 14 IQIGGRVLASRYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALLT 73 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 D P T+QI G E+ AAR + G +D+NMGCP K+N G+ ++ Sbjct: 74 TSPADRP--LTIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCA 131 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 PD ++ EVV+AV +PVT+K+R GW + +A+ E G+ A+T+HGRTR F Sbjct: 132 PDAACQLVAEVVDAVSIPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVHGRTRNQGF 191 Query: 178 NGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 G + IR + V IPVI NGD+ A + + TG +A+ IGR A PWIFR+ Sbjct: 192 GGTVDLQGIRQTVEAVQQIPVIGNGDVCTVEDAFRMREQTGCEAVSIGRGAMLDPWIFRK 251 Query: 237 IQHYLDTGELLPPLPLAEVKRL--LCAHVRELHDFYGPAKGYRIARKHVSWY 286 I + + P +++ L + + E H+ Y G R+ RK +WY Sbjct: 252 ISQAVRDEPVTEPTRDEQIQFLERHFSLMFEQHELY----GCRLIRKFAAWY 299 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/314 (31%), Positives = 161/314 (51%), Gaps = 19/314 (6%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 ++ ++ APMAG+TD FR + + T +EM+S + ++ K +++ + E I Sbjct: 1 MKLKIYTAPMAGVTDYTFRKIIEDFKPDFTFTEMVSVDKLLY---KEVPKILKLRENNI- 56 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQI G D M AA+ G + I++N GCP KK+ GSAL++ P ++ ILT Sbjct: 57 -VQIFGKDIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKIEEILTA 115 Query: 128 VVNAVD--VPVTLKIRTGW-APEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + +D ++LKIR G+ PE N EIA++AE + IHGRTR ++GEA++ Sbjct: 116 LREVLDPKTALSLKIRVGYDKPE--NYLEIAKIAEKLKCSNIIIHGRTREQKYSGEADWK 173 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I+ VK V+I VI NGDI D A + T D +M+ R G PW+ +I+ + G Sbjct: 174 YIKEVKDNVNIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNPWLISQIKELFEFG 233 Query: 245 ELLPPLPLAEVKRLLCAHVREL----HDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 E+ + + + HV+E + + P RK++ WY++ D+ + Sbjct: 234 EIKTIVRDIDRINMAIRHVKEYAIDNENVFFPD-----IRKYIIWYIENIKGIDETKNLI 288 Query: 301 NAIEDASEQLEALE 314 N + E +E LE Sbjct: 289 NQSFEYDEIIELLE 302 >UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus RepID=Q1J2A4_DEIGD Length = 333 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 113/321 (35%), Positives = 164/321 (51%), Gaps = 24/321 (7%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM--VHIDEPGIRTVQ 70 + APMAG +D P R L E GA TVSEM+S+ V D +L + + E G R VQ Sbjct: 18 VLAPMAGYSDAPMRQLAAEQGALWTVSEMISARGLVLGGDSEKLTLGRPYPGEVG-RVVQ 76 Query: 71 IAGSDPKEMADA-ARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 + G++P +A A AR +D+NMGCP KV + G+ LLQ P+V +++ + Sbjct: 77 LFGAEPDVLAQAVARAESWFAPAALDLNMGCPVPKVKGR-GGACLLQTPEVAYTLVRAMR 135 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 +A + V+ KIR GW + EIAQ G +T+HGRT ++GEA++D+I V Sbjct: 136 SATTLDVSAKIRLGW--DTDRSVEIAQGLAAAGAALITVHGRTSVQRYSGEADWDAIARV 193 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 V +PV+ +GD+ +ARA L+ TG A+MIGR A G PW+FR + D Sbjct: 194 AASVKVPVVGSGDVKSAEQARARLN-TGVAAVMIGRGAVGNPWLFRALASGDDV------ 246 Query: 250 LPLAEVKRLLCAHVRELH-DFYGPAK----GYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 +P A+ + +LH FYGP + R RK + YL +H N + Sbjct: 247 VPSAQERARTALRHAQLHVTFYGPDRFGLLSVRPLRKVLPHYLPDHPELRAALVQVNTVA 306 Query: 305 DASEQL-----EALEAYFENF 320 D + L +AL +NF Sbjct: 307 DVEQALAPLLVDALPPQTQNF 327 >UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=Epsilonproteobacteria RepID=DUS_HELPJ Length = 328 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 163/315 (51%), Gaps = 12/315 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 ++ + L AP+AG TD PFR++ + G +T SEM+SS+ V+ DK+ + Sbjct: 3 FKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPLED 62 Query: 66 IRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 QI+GS + +A +IN ID N GCPA KV GS LL+ + + I Sbjct: 63 HFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEI 122 Query: 125 LTEVVNAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA-E 182 L + + +T +K+R G+ E + +EIA D + + +HGRTR+ + + + Sbjct: 123 LKVIRENTNKKITSVKVRLGF--EKKIPKEIAHALNDAPVDYVVVHGRTRSDRYQKDKID 180 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 Y+SI +K+ + PVIANG+I KA VL T AD LMIGRA PWIF +I++ + Sbjct: 181 YESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRN--N 238 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 T E LP K L+ H ++ +FYG +G + RK++ Y + FR N Sbjct: 239 TTE----LPAVVKKDLVLEHFDKMVEFYGD-RGVIMFRKNLHAYAKGEMQASAFRNCVNT 293 Query: 303 IEDASEQLEALEAYF 317 + + E++E +F Sbjct: 294 LTEIKSMRESIEEFF 308 >UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Treponema RepID=DUS_TREPA Length = 340 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 146/277 (52%), Gaps = 14/277 (5%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG L+ + AP+AG +D FR++ E A T +EM+SS V +S ++ + Sbjct: 10 VSIGPLSLKGNVFFAPVAGYSDSAFRSIAIEWEASFTYTEMVSSEAMVRDSLNTKRLIRR 69 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPD 119 +QI GS+P MA+ A++ V+S IDIN GCP K+ + AG+AL + P Sbjct: 70 ASNETHYAIQIFGSNPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTGAGAALTREPT 129 Query: 120 VVKSILTEVVNAV-----DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA 174 + ++ V +AV +PVT+KIR GW H +E A+ A D G QAL +H RT A Sbjct: 130 RLYEVVKAVADAVYAQDARIPVTVKIRAGWEEAHLTWKEAARAAVDAGAQALALHPRTCA 189 Query: 175 CLFNGEAEYDSIRAVKQKV----SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 + GEA +D I + Q +PV +GD+ P ARA+L++T +M R A G Sbjct: 190 QCYAGEANWDIIADLVQCARGWGEVPVFGSGDLHAPEDARAMLEHTACAGVMFARGAMGN 249 Query: 231 PWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELH 267 P+IFR+ + L G P ++ L A RELH Sbjct: 250 PFIFRQTRQLLTEGYYTP----VTFEQKLRAAWRELH 282 >UniRef50_D2MLS1 TIM-barrel protein, nifR3 family n=1 Tax=Bulleidia extructa W1219 RepID=D2MLS1_9FIRM Length = 234 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 1/219 (0%) Query: 103 KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCG 162 KK+ + AGS LLQ P + + VV+ PVT+KIRTGW +H+N E+A++ E+ G Sbjct: 13 KKIIKSHAGSYLLQDPRQAQKVAKAVVDHSKKPVTVKIRTGWDHQHKNAVEVAKVLEEAG 72 Query: 163 IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 + A+TIHGRT++ +++G + + I+ VKQ VSIPVI NGDI + +L+ TG DA+M Sbjct: 73 VSAITIHGRTKSQMYSGTVDLEMIKQVKQAVSIPVIGNGDIKTVEDGKRMLEETGVDAIM 132 Query: 223 IGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKH 282 IGR GRP+ E+ +L+ E + P L + LL + L G G ++ R Sbjct: 133 IGRGLLGRPYFMSEMVAFLNGEEFIEPSFLKRI-HLLEEYAIHLSARMGEKNGIQMMRGM 191 Query: 283 VSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA 321 SWY+ Q ++ ++I + + L+ Y ++ A Sbjct: 192 ASWYVTGMPNCSQIKKALSSIHTLKDLQQILKDYKKSLA 230 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 134/227 (59%), Gaps = 4/227 (1%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 L N++ APMA TD PFR +C GA T +EM+S + + E++K + E I Sbjct: 2 LENQIGLAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLPQKGEDNI- 60 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQ+ G++ + +AA+ +++ A IDIN CP KV +K +G+ALL+ P ++ I+ Sbjct: 61 GVQLFGNETTKFIEAAK-SIQHLASWIDINAACPVNKVVKKGSGAALLKNPKLLGDIVFN 119 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + ++D+PV +K+R G+ + N EE+A+ E G + +HGRTR+ +++G A + ++ Sbjct: 120 LKKSIDLPVGVKVRLGY--DQINIEEVAETVEKAGADYIIVHGRTRSQMYSGIANREILK 177 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 +K K++IP+ A+GD+ L GAD +++ R A G PWIF Sbjct: 178 KLKAKITIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIF 224 >UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Y9_ATOPD Length = 363 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/298 (33%), Positives = 150/298 (50%), Gaps = 20/298 (6%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMS------SNPQVWESDKSRLRMVHIDE 63 N ++ APMAG++D +RT+ GAGL SEM+S + WE L E Sbjct: 37 NPVLMAPMAGVSDGVYRTMARAGGAGLAYSEMVSVAGIHFGGEKTWE-----LVEPLSTE 91 Query: 64 PGIRTVQIAGSDPKEMADAA-RINVESGAQI--IDINMGCPAKKVNRKLAGSALLQYPDV 120 P I VQ+ GS P++ +AA +I+ G ++ IDINM CP KV +K GSALL P++ Sbjct: 92 PDI-AVQLFGSKPEQFKEAAAQISERLGNKLALIDINMACPVPKVVKKGEGSALLDTPEL 150 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +++ ++ V VPVT+KIR G + E A+ E G A+ +HGR ++ G+ Sbjct: 151 AANLVKACLSEVTVPVTVKIRRGRRQDEEVAPEFARAMEAAGASAIAVHGRFATQMYRGQ 210 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AE++++ V VSIPVI +GD+ L TG A+MI R G PWIF+ Q Sbjct: 211 AEWETVNRVCDAVSIPVIGSGDMLSAEDVAHALKETGVTAVMIARGTYGNPWIFKNTQAL 270 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 L+ P V ++L + + + AR +WY + PN + R Sbjct: 271 LEGKTPFVP----SVDQMLASFMMHVKLLDAAHIHIARARSLSTWYFR-GIPNAAYWR 323 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 144/282 (51%), Gaps = 4/282 (1%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 +R APMAG TD FR L + GAGL V+E++S+ + K+ M H ++ ++ Sbjct: 14 SRFFLAPMAGYTDYVFRRLSRKFGAGLLVTELVSAAALARQVKKTYRYMEHKEDEYPISL 73 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G++ + A I SG IDINMGCP KKV + G+ LL+ D + S+L V Sbjct: 74 QLFGANEDDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTDKMISVLNAVK 133 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 + +PV++KIR G E A ++ G LT+HGR + ++ G A++++I + Sbjct: 134 SVSPLPVSVKIRLGLKRGEGGEIERALAMKENGACFLTLHGRYASDMYRGTADWEAIAKI 193 Query: 190 KQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH-YLDTGEL 246 K+ + +I NGDI A D + D +M+GR A G PWIF E+ + D E Sbjct: 194 KEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAIGNPWIFTELNTIFEDNDEY 253 Query: 247 LPPLPLAE-VKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL 287 + + +K ++ H+ + YG G RK + YL Sbjct: 254 NNKIDEKDNLKNIIKEHINGCCELYGEVSGIHFMRKFIMKYL 295 >UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C170_DESAD Length = 323 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 144/301 (47%), Gaps = 6/301 (1%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 AP+AG +D PFR LC + G + +EM+S ++ ++ + E VQ+ G Sbjct: 14 APLAGYSDLPFRMLCRKRGCAVACTEMVSVKGLKYDGKGTKALLATCPEDNPLVVQLFGG 73 Query: 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD-VVKSILTEVVNAVD 133 +P++ +D ++ G D+N GCP KKV + GSAL PD +V++ V A + Sbjct: 74 EPQDYSDTMPQLIDEGYSFFDLNSGCPVKKVLKTGGGSALHLDPDRLVETASAMVRVAGE 133 Query: 134 VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 V +KIR G+ N EIA+ ED G+ LT+H R +F+G+A++ + +KQ V Sbjct: 134 GKVGVKIRLGFMNGEDNFLEIAKRLEDTGVAWLTMHPRYAKQMFSGQADWSKLAVLKQNV 193 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL--LPPLP 251 SIPVI +GD+ + TG D +M R A P IF LD + LPP Sbjct: 194 SIPVIGSGDLFTAEDGMECIKQTGIDGIMFARGALFDPEIFARYLKLLDDPKCATLPPFD 253 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 L + H+ DF G + +R R + Y + R A ED E LE Sbjct: 254 LGKTME---EHINMTRDFDGSNRSFRKIRSILPRYAKGMDGIRSIRTKLTACEDWEELLE 310 Query: 312 A 312 A Sbjct: 311 A 311 >UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6M9N8_PARUW Length = 297 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 6/239 (2%) Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ GS P AA+I E G I+D+N GCP K+ + +GS LL+ P+++ I+ +V Sbjct: 30 QLCGSKPSIAGQAAKIIEELGFDIVDLNCGCPVDKITKDGSGSGLLKTPELIGEIVCNMV 89 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 +AV +PVT+KIR GW + E I Q+ E G QA+ IHGRTR + G A ++ I+ Sbjct: 90 SAVKIPVTVKIRAGWDEQQIQVENIVQIVEQAGAQAICIHGRTRQQGYRGPANWEYIKRG 149 Query: 190 KQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 K SI +I NGD+ D A + TG DA+++ R G+PWI ++I YL+ G+ Sbjct: 150 KLAAKSIKIIGNGDVLDGPSAAKMFCETGCDAVLVARGTLGQPWIVQDILRYLE-GKTAI 208 Query: 249 PLPLAEVKRLLCAHVRE-LHDFYGPAKGYRIARKHVS-WYLQEHAPNDQFRRTFNAIED 305 L + ++ L H E LH Y P + I + V WYL++ + FR + D Sbjct: 209 CHSLEDCRQALYQHFLETLH--YHPDQRVCIDMRRVGCWYLKKSSGTRLFRELISKASD 265 >UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C5_9ACTN Length = 390 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 106/339 (31%), Positives = 157/339 (46%), Gaps = 33/339 (9%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR-LRMVHIDEPGIRTVQ 70 +AAPMAG+T+ +R + GA SEM+S ++ +R L + H EP + VQ Sbjct: 37 FLAAPMAGVTNSAYRIMNRLGGAQYAYSEMVSVAGLCMKNQATRELCLPHTAEPNL-IVQ 95 Query: 71 IAGSDPKEMADAARINVE---SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 + GSDP + A + E IDINM CP KV ++ GSAL+ P +++ Sbjct: 96 LFGSDPVQFQRACALVGELLGDKLSCIDINMACPVPKVTKRGEGSALMCDPHRACALVRA 155 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + V VPVT KIR G+ +H + E + +D G AL +HGR L+ GEA ++SI+ Sbjct: 156 CLREVRVPVTCKIRRGYYMDHESAAEFGRALQDAGASALAVHGRFAKQLYKGEANWESIK 215 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 V + V IPVIA+GD+ A +L T A A++I R G PWIF + + +LL Sbjct: 216 RVVEAVDIPVIASGDVMSAEDACRILYKTQAHAVLIARGTYGNPWIFDDALKIFNKKKLL 275 Query: 248 PPLPLAEVKRLL--------------CAHVRELHDFYGPAKGYRI--------------A 279 +++ LL AH+ + H + A Sbjct: 276 LKGNPSDLSALLDAGLYNSSAREHNRHAHITDTHSISARLNALELHLRLLAATHAHMARA 335 Query: 280 RKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFE 318 R SWYL + +R+ F E L L+A+ E Sbjct: 336 RSLCSWYLYGLSHAALWRQKFMTATTLDEFLHLLQAFKE 374 >UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X346_9BACT Length = 355 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 132/232 (56%), Gaps = 6/232 (2%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSN--PQVWESDKSRLRMVHIDEPGIRTVQIA 72 APM ++ P+R LC E+GA +TVSEM + Q S+ + +R EP VQ+A Sbjct: 2 APMTKGSNLPYRRLCVELGARITVSEMTLARRLKQKRNSEFALIRRFP-GEPCF-GVQLA 59 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G+ P E A AA + GA +DIN GCP RK G+++ + P ++ ++ + +V Sbjct: 60 GNKPDETAWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVEAIKGSV 119 Query: 133 -DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 ++PVT KIR GW + RN + AQ A D G AL +HGRTR + A++D+I + Sbjct: 120 TNIPVTAKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTRNARYRFAADWDAIARIVA 179 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE-IQHYLD 242 V +PVI NGD+ P + A + +G A+M+ RAA +PWIFRE + Y D Sbjct: 180 AVPVPVIGNGDLLFPHEIAAARERSGCAAVMVARAALIKPWIFREAVDGYWD 231 >UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga lettingae TMO RepID=A8F480_THELT Length = 305 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 16/304 (5%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAGIT+R FR +C GA + +EM+S+ V + K+ RM+ DEP + VQ+ G+DP Sbjct: 1 MAGITNRAFRKICTFWGAQFSFTEMISAESVV-RNFKTVQRMLPKDEPNV-AVQLFGNDP 58 Query: 77 KEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPV 136 K +A AA+I VE A IDIN CP KKV +K +G ALL + ++ I+ V ++V PV Sbjct: 59 KTLAQAAKI-VEPYAAWIDINAACPVKKVIKKNSGGALLNDLERLEKIIGSVKSSVQKPV 117 Query: 137 TLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIP 196 T+KIR G+ E ++I G + +HGRT ++G+A +D ++ + +S Sbjct: 118 TVKIRIGF--EKNILDQIVHSCIKAGADGIEVHGRTVVQKYSGKAFWD-LKLSQYGISTA 174 Query: 197 VIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVK 256 V +GDI + L+ +GA++ +I R A +PWIF +I T + P + E+K Sbjct: 175 V--SGDIFEAEDFHKALEMSGANSALIARGALRKPWIFAQI-----TQKRTP--KITEIK 225 Query: 257 RLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAY 316 H++ + G Y++ R+ V+ Y +FR F + + +A+E + Sbjct: 226 ETFTKHLKMQIEDEGERSIYKM-RQFVAGYTHGMRGAREFREKFMKLNKPEDMEKAIEEF 284 Query: 317 FENF 320 F +F Sbjct: 285 FNSF 288 >UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella RepID=Q5ZRM0_LEGPH Length = 329 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 153/304 (50%), Gaps = 15/304 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLC-YEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG +L +RLI P+AG + PFR L VSEM S+ + + + Sbjct: 10 LQIGSLKLPHRLIQGPLAGYSCAPFRDLFNIYTPPAYCVSEMCSAIDILHKHSSQSRYIY 69 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 QI+G++P +A+AA GA +IDIN GCP K+ +K AGSALL+ P Sbjct: 70 RAPTEKFLAYQISGNEPHVLAEAAAKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQ 129 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEE---IAQLAEDCGIQALTIHGRTRACL 176 + +I++ V A+ +P+T+KIR +N E+ +A+ ED G AL +HGR Sbjct: 130 KLIAIISRVRAAISIPLTIKIRI------QNNEKDLTLAKQIEDAGAHALIVHGRRWTED 183 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 ++ + I +K V+IPVI NGDI + R L+ + D MI RA G+PW++R+ Sbjct: 184 YDIPCNWQQIANIKNAVNIPVIVNGDINNIFSLRKALEISACDGFMISRAGTGKPWLYRD 243 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 + + L+T + + E +L H+ L K ++ V +Y ++ Q Sbjct: 244 LLN-LETND----VAFDEKLKLFMLHLEGLSCLENEYKAVLQSKSLVRYYFKKQLNEQQL 298 Query: 297 RRTF 300 ++ + Sbjct: 299 QQFY 302 >UniRef50_A8J121 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8J121_CHLRE Length = 368 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 14/282 (4%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAGI+ P+R L GA + SEM+ ++ + ++ ++R D+ +R+VQ+ G P Sbjct: 1 MAGISSAPYRRLATSHGAAMATSEMVIASTLLVKNRRTRKLASFADDERVRSVQLYGVKP 60 Query: 77 KEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDV- 134 +++ A R+ V E G Q +D+N GCP +K+ + GSAL P + ++ V Sbjct: 61 EQLEQAVRLLVCEHGVQHVDLNFGCPVRKITARGGGSALPLRPRLFAKLVAAAVAGAGGE 120 Query: 135 -PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 PVT+K R G PE + ++AE G AL +H RT L+ ++ ++RA+ + V Sbjct: 121 APVTVKFRVGLTPELPTHLQAGRIAEAEGAAALVLHARTADQLYASPVDWAAVRALVEAV 180 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLA 253 IPV+ NGD+ + A +L TG +M+GRAA GRPW+F E+ L PP L Sbjct: 181 RIPVVGNGDVFEGADALRLLRETGCAGVMVGRAAVGRPWVFDEVAAALTGAPPPPPPRLG 240 Query: 254 EVKRLLCAHVRELHDFYGPAKGYRIA--------RKHVSWYL 287 EV H D+Y +GY + RK + YL Sbjct: 241 EVVAAALRHAEMEVDWY---RGYHDSERDTLLRFRKFIKLYL 279 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/270 (35%), Positives = 135/270 (50%), Gaps = 22/270 (8%) Query: 5 QYQLRNR-----LIAAPMAGITDRPFRTLCYEMGA---GLTVSEMMSSNPQVWESDKSRL 56 ++ LRN+ I +PM G+TD PFR LC + GL VSE + ++ + Sbjct: 12 RFNLRNKEIFPNTILSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFNPDGHK 71 Query: 57 RMVHIDEPGIRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVNRKLAGSALL 115 ++ E VQI G P MA AA +I + I++N GCPA KV K +GS LL Sbjct: 72 QLKFFPEERPFGVQIFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGSGSGLL 131 Query: 116 QYPDVVKSILTEVVNAVD-----VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHG 170 + ++ IL +V +D +P+TLK R GW + N E ++AE G++ LT+HG Sbjct: 132 RDLPRLQEILHDVKAVLDAKTPEIPLTLKCRIGWDDDSINVMETLKIAEGEGVEMLTVHG 191 Query: 171 RTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 RTR +NG A +D I V IPVI NGD+ AR ++ G + IGR A Sbjct: 192 RTRLQGYNGLANWDWIGKVAAAAKIPVIGNGDVNSVECARERINTYGVSGVSIGRGAMHN 251 Query: 231 PWIFREI--------QHYLDTGELLPPLPL 252 PWIF +I +H + E L PL Sbjct: 252 PWIFGQIADAWEGREKHVITAQEALDVFPL 281 >UniRef50_Q4ACC5 TRNA-dihydrouridine synthase B (Fragment) n=3 Tax=Enterobacteriaceae RepID=Q4ACC5_EDWTA Length = 95 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 64/82 (78%), Positives = 68/82 (82%) Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YLDTGELL +PL E+ LL HV+ELHDFYG KG RIARKHVSWYLQ HAPNDQFRRT Sbjct: 1 YLDTGELLKKVPLGEIFPLLAGHVKELHDFYGSGKGLRIARKHVSWYLQAHAPNDQFRRT 60 Query: 300 FNAIEDASEQLEALEAYFENFA 321 FNAIEDASE LEALEAYFE + Sbjct: 61 FNAIEDASEHLEALEAYFEKLS 82 >UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F231_9HELI Length = 317 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/315 (33%), Positives = 172/315 (54%), Gaps = 20/315 (6%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH---IDEPGI 66 N L+ AP+AG +D PFR + + GA +TVSEM+S + +++ K+ ++M+ ++ P Sbjct: 9 NTLMLAPLAGYSDLPFREVVKKFGADITVSEMISVHALAFKNKKT-IKMIEKSPLENPF- 66 Query: 67 RTVQIAGSDPKEMADAARI--NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +QIAG+D + A ++ QI+D+N GCPA KV+ +GS+LL+ + + I Sbjct: 67 -ALQIAGNDFGIIQKAVEFLNEFKNEIQILDLNCGCPAPKVSSHGSGSSLLKDLNKLVKI 125 Query: 125 LTEVVNAVDVP-VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA-E 182 L + P +++K+R G+ + + EIA D I + +HGRT++ + + + Sbjct: 126 LQLLRETSVFPYLSVKVRLGF--DKKIPLEIANALNDSPIDYVVVHGRTKSDGYKKDKID 183 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 YDSIR +KQ + P+IANG+IT P A+ V + TGA+ +MIGRAA +PWIF +I++ L+ Sbjct: 184 YDSIRLIKQNIQHPLIANGEITSPQIAKKVQELTGAEGVMIGRAAIEKPWIFTQIKNNLE 243 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 L K++ H F G G + RK++ Y + FR NA Sbjct: 244 ESIELR-------KQVALEHFDRTISFRGDY-GAIMFRKNLHAYSKGLKGASDFRNKVNA 295 Query: 303 IEDASEQLEALEAYF 317 I + + E + +F Sbjct: 296 ITNPALMREEIFNFF 310 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 158/310 (50%), Gaps = 7/310 (2%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT-- 68 + APMAG TDR FR L YE G V+EM+S+ + +D+ L ++ PG + Sbjct: 3 KFFMAPMAGYTDRAFRQLIYENGLDHAVTEMVSARALCF-NDRKTLELLK-KFPGEKNTG 60 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQI SD + ++ A+ + + IDINMGCPA K+ + GSAL++ P++V ++ Sbjct: 61 VQIFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVYELVKGA 120 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 V + +++K R + ++ +I + A+D G A+T+H R+R + ++++ + Sbjct: 121 VKNSNKKISIKTRKSF--DNTLSLDIIRAAQDAGAFAVTVHPRSREEYYKNKSDWQYLIK 178 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 +K+ ++IP+I NGDI A + D + IGR A P IF +I+ L GE Sbjct: 179 IKKFLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQIKKAL-KGEKYE 237 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 L + +L H+ ++ G + RK ++YL+ + + R N D + Sbjct: 238 ELNFNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKEIRNKLNVENDYTN 297 Query: 309 QLEALEAYFE 318 ++ LE Y E Sbjct: 298 VVKILEEYRE 307 >UniRef50_D1N0Y1 Dihydrouridine synthase DuS n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Y1_9BACT Length = 334 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 13/312 (4%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 N L+ AP++G TD P+R G +EM+ + ++S + E V Sbjct: 7 NALLMAPLSGFTDLPYRRAARAGGCRFAFTEMVDVASLTYARERSAGMLRRGPEEEFLGV 66 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G+D + + AA + E ++D N+GCP KV +K AG+ L ++ D + + Sbjct: 67 QLVGADHEFIRRAADVVNEYEFSVVDFNLGCPVPKVAKKGAGAELGRHLDAALACFAIIA 126 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 PVT KIR A + +A+ + G QA+T+HGR + ++G + IRAV Sbjct: 127 ERSRHPVTAKIRIVDAEDPAPTLALAKGLAELGAQAITVHGRIKEAFYSGPVNFGMIRAV 186 Query: 190 KQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 ++ + + VIANG +T +K + + TG +M+ R A G PW+F E L G+ Sbjct: 187 REALPGVQVIANGGVTGRVKYQEIRRETGCSLVMLARGAMGNPWLFNE----LSLGDAYV 242 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P + E ++ HV + + YG R+ARK + YL+ R F+++ A Sbjct: 243 PPDIDEWFGVIREHVEGMIELYGEESAMRMARKILHDYLKG--------RGFHSVMKALA 294 Query: 309 QLEALEAYFENF 320 A A FE F Sbjct: 295 SAVATRADFEAF 306 >UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1E8_MARMS Length = 335 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 141/271 (52%), Gaps = 18/271 (6%) Query: 12 LIAAPMAGITDRPFRTLCYEMGA-GLTVSEMM---------SSNPQVWESDKSRLRMVHI 61 L APM G+ D R L + G VSE + ++ + + ++ R H Sbjct: 21 LAVAPMEGVMDHTMRALLSQTGGMDYLVSEFIRVTQYPIPAATFKHLVPENTNKARTTH- 79 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 + P + T Q+ GS+ + MA++A ++GA+ ID+N GCPAK+VN GS LLQ PD + Sbjct: 80 NHP-VHT-QLLGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTPDAL 137 Query: 122 KSILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 I++ + + + D+PV+ KIR G+ E + +A + E G+ LTIHGRT+ + Sbjct: 138 YDIMSAIRDTLPSDIPVSAKIRLGFEDEALLFDNVAAI-EAAGVGTLTIHGRTKKDGYKP 196 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A ++ I ++ K + V+ANGDITD TG MIGR + P++F++I+ Sbjct: 197 PARWEKIGEIQAKTKMTVVANGDITDTKSLLRCQSITGCQHFMIGRGSLNNPFVFQQIRK 256 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFY 270 L+ E + RL ++ REL + Y Sbjct: 257 ELNGQE--STADTTNLNRLFISYSRELQEHY 285 >UniRef50_C2KNM7 Possible tRNA-dihydrouridine synthase n=4 Tax=Mobiluncus RepID=C2KNM7_9ACTO Length = 471 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 146/301 (48%), Gaps = 15/301 (4%) Query: 35 GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQI 93 G+ V EM+++ S++S + + ++++Q+ G +++A AA V G A Sbjct: 118 GMFVGEMVTAKALRMGSERSWVMVKSGPLQAVKSIQLYGVVGEDLAWAAGELVRRGLADH 177 Query: 94 IDINMGCPAKKVNRKLAGSAL-----------LQYPDVVKSILTEVVNAVDVPVTLKIRT 142 ID+N GCP KV RK GSAL + + + VPVT+KIR+ Sbjct: 178 IDLNFGCPVPKVTRKGGGSALPWKTAYFGEVVAAVVAATRVASEDSGRSFPVPVTVKIRS 237 Query: 143 GWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 G EHR ++A++AED G+ A+T+H RT + + G + ++ I A+ + + IPV+ NGD Sbjct: 238 GIDAEHRIFLDVARVAEDNGVAAVTLHARTTSEYYGGHSHWEDIAALVEVLDIPVLGNGD 297 Query: 203 ITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP-LAEVKRLLCA 261 + A + TG + IGRA QGRPWIFREI L G +P P L EV + Sbjct: 298 VFCAADALEMFRETGCAGVEIGRAVQGRPWIFREITAAL-WGLPVPVGPSLGEVANVARR 356 Query: 262 HVRELHDFYG-PAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 H L YG R RKH+ WY + + R +E +E +A E Sbjct: 357 HAEGLVAHYGNELVALRDMRKHLGWYFRGFGLGGEMRGRLARVESLAELEQATHELIERL 416 Query: 321 A 321 Sbjct: 417 G 417 >UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=Deltaproteobacteria RepID=Q30WR3_DESDG Length = 376 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 139/296 (46%), Gaps = 25/296 (8%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESD-KSRLRM 58 ++IG + RL APMAG+ +R + G GL + M S+ E+ +S + Sbjct: 48 LQIGGRTVNGRLFLAPMAGLGHIAYRQVLESFGGCGLVFTGMCSARAVPTENPARSPVFS 107 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 +E Q+ G+DP++MA AAR G +DINMGC + +K G+ LL+ P Sbjct: 108 WRPEELPALVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLLRDP 167 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AV VPV +K+RTGW+P+ +A+ +D G AL H R Sbjct: 168 ERAVRMVDAVRRAVSVPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPRVAPDRRT 227 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR--- 235 I VK V IPVI NGD+ D A+L+ TG D + +GR A RPWIF Sbjct: 228 HRPRTAHIGLVKDAVDIPVIGNGDVFDAADCAAMLERTGCDGVSLGRLAIARPWIFAQWT 287 Query: 236 -----EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWY 286 E Q Y DT L A + L Y PA+ ++ +K + +Y Sbjct: 288 RGFVPEKQTYRDT---------------LFALMDALEAHYDPARAIKLYKKLIMYY 328 >UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI99_KOSOT Length = 314 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 156/310 (50%), Gaps = 11/310 (3%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 N + APMAG TD R + E GA SEM+S V +D++ ++ I E R + Sbjct: 4 NEVGLAPMAGYTDEAMRAISLEWGADFVFSEMLSVE-GVLRNDRTTQKI--IPETPCR-I 59 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G+D +A AA+ ++ A DIN GCP KKV ++ AG+ALL+ P+ + +++ + Sbjct: 60 QLFGNDIARLAMAAKAVLDK-ATWFDINAGCPVKKVVKRGAGAALLREPEKLNAMIQTLK 118 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 D+PV++KIR GW + +I + + A+ +HGRT ++G A+++SI V Sbjct: 119 GISDLPVSVKIRLGW--DKNEVVKIVERLVESRPFAIMVHGRTVVQGYSGVADWESIGKV 176 Query: 190 KQKV---SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + I V +GD+ P K + G D +++ R A G PWIF + + G Sbjct: 177 VKICKPHGIKVYGSGDVFSPEKIVEAFEKYGVDGVLVARGAIGNPWIFSQYKELKQKGSY 236 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P P +K + H+++L + G + +RKH Y + + RR + +++ Sbjct: 237 TVPDPHERLK-VFAKHLKKLIELKGEERAIIESRKHFVGYCKGLLNATKMRREYMKLKNK 295 Query: 307 SEQLEALEAY 316 ++ L Y Sbjct: 296 TDVENFLMQY 305 >UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K738_THENN Length = 273 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 148/280 (52%), Gaps = 11/280 (3%) Query: 41 MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGC 100 M+S+ + S+K+R + +E + VQI GSDP+E++ AA + + ID+N GC Sbjct: 1 MVSAKGFLMNSEKTRELLPSPEEKNV-AVQIFGSDPEELSRAADV-LSDEYPWIDLNAGC 58 Query: 101 PAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED 160 P +KV +K AG LL+ D+ ++++ E+ V T+K R GW +I ++ + Sbjct: 59 PVRKVVKKGAGGGLLRDLDLFRAVVKELRKHVKGKFTVKTRLGW--NENQISKIYEILVE 116 Query: 161 CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADA 220 G+ + IH RT A F G+A++ S+ + +K IP +GDI P A+ L+ +G Sbjct: 117 EGVDEVFIHTRTVAQAFTGKADWKSLSVLDKK--IPTFVSGDIFSPEDAKRALEESGCHG 174 Query: 221 LMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR 280 +++ R A GRPW+F++I+ +L+ G+ P E+ R H+ L + G K + + Sbjct: 175 VLVARGAIGRPWLFKQIKDFLERGKYSEP-STDEILRSFEMHLSLLVEDKGEEKAIKEIK 233 Query: 281 KHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 K V+ Y + +FR I++ L+ L+ F NF Sbjct: 234 KFVAGYTKNLKGARRFRDEMMKIKN----LQTLKEMFYNF 269 >UniRef50_C7NBC4 Dihydrouridine synthase DuS n=3 Tax=Leptotrichia RepID=C7NBC4_LEPBD Length = 325 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 155/309 (50%), Gaps = 12/309 (3%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ APMAGITD FR + + +EM+++N E D + ++ D Q Sbjct: 2 KIYTAPMAGITDYSFRKILEKFEPDFLFTEMVNANLLNREDDTTINELLKCDNKEKTGTQ 61 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I G D E+ G + I+INMGCP K+ + AGSALL+ ++V+ +L E N Sbjct: 62 IFGGDKNELVSGILKLKNFGFRKININMGCPQPKIVKNGAGSALLENYELVEQVLLETQN 121 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV- 189 +D +++KIR G+ + N E LA + + +HGRT+ +++G A ++ + + Sbjct: 122 -IDAKISIKIRVGYK-DFDNPEIFLNLANKHNLDFICVHGRTQKQMYSGTANWEIVEKLS 179 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 K +I NGD+ +P + + + D +++ R G PW+ + + +L TG++ Sbjct: 180 KMPRNINFFGNGDLFEPSEIKRKIASCNLDGIILSRGIIGNPWLISQTREFLKTGKINTI 239 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 E K L+ H++ + + KG + A ++ +L+ + F++ ++ D + + Sbjct: 240 QTFDETKSLVLEHLQNIVE----NKGEKKAVLEINKFLRPY-----FQKFWDKNLDRNSE 290 Query: 310 LEALEAYFE 318 + +E +F+ Sbjct: 291 IAVIENFFD 299 >UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycetaceae RepID=D2QXV2_9PLAN Length = 354 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 152/325 (46%), Gaps = 11/325 (3%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV---WESDKSRLRMV 59 IG + ++ A ++G +D P R + GA + E+M V + K+R + Sbjct: 7 IGNVHVGFPVVQAALSGYSDWPMRVIARRHGASYALCEVMLDKFLVTLKGDRKKNRHFLY 66 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 DE Q+ G++P E A A E+G +IDIN GCP KKV + G L PD Sbjct: 67 LTDEDHPVAGQLMGAEPAEFAQGALRLAEAGFDVIDINFGCPVKKVLGRCRGGFHLSQPD 126 Query: 120 VVKSIL--TEVVNAVDVPVTLKIRTGWAPEHRNCE---EIAQLAEDCGIQALTIHGRTRA 174 V I+ T + +PVT+K+R G + + EI A G+ A+T+HGRT Sbjct: 127 VALEIVRRTRDIVPAHIPVTVKMRRGLDDTQLSRDRFFEILDGAFAAGVAAITVHGRTVV 186 Query: 175 CLFNGEAEYDSIRAVKQKVSIPVI-ANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 + G + + + VK+ V VI +GD+ A++ TG D + + R A G PWI Sbjct: 187 QRYVGPSRWSFLTEVKRHVGSRVILGSGDLFSAQDCLAMMRETGVDGVTVARGAIGNPWI 246 Query: 234 FREIQHYLDTGELLPPLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP 292 F + + LD GE LPP P L E K + H R + YG K RK Y H Sbjct: 247 FSQCR-ALDAGEPLPPPPTLFEQKATILEHYRLAAELYGDDKCSAPMRKFGIKYAALHPR 305 Query: 293 NDQFRRTFNAIEDASEQLEALEAYF 317 + + R F ++ ++ L++++ Sbjct: 306 HLELREAFTKVKCLADWQGVLDSWY 330 >UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogaceae RepID=A7HK00_FERNB Length = 322 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 27/308 (8%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 APMAG+TD PFR LC + GA +EM+S+ + + + DE VQ+ GS Sbjct: 14 APMAGVTDYPFRKLCLQHGAYFAFTEMISAKSVIINVKINEIYFPRQDEKDRVGVQLFGS 73 Query: 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDV 134 D E+++AA I E G +D+N GCP KV +K AGSALL+ + ++ + +V Sbjct: 74 DYAELSEAAAIVQEKGLW-VDLNAGCPVSKVIKKGAGSALLKDLGEFRKVV-RAMRSVLK 131 Query: 135 PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS 194 T+K R GW E E+I + + + A+ +HGRT +++G+A + + Sbjct: 132 RFTVKTRIGW--EKDEFEKIYNILLEENVDAVFVHGRTAKQMYSGKATWK----IYNPGF 185 Query: 195 IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAE 254 +P+ +GDI + ++ +GA +++ R + G PWIF EI GE P E Sbjct: 186 VPLYISGDIYTKEDIKNAMEQSGATGVIVARGSIGNPWIFSEI------GE-----PNCE 234 Query: 255 VKRLLCAHVRELHDFYGPAKGYR--IARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEA 312 + LC ++ L Y K Y + RK V+ Y + FR I +LE Sbjct: 235 QR--LCTILKHLEYLYDEYKDYGAVVFRKFVAGYTKNMLGARDFRDKVMKI----RKLEE 288 Query: 313 LEAYFENF 320 L + F+ F Sbjct: 289 LSSEFQKF 296 >UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=B8DIS9_DESVM Length = 383 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 5/287 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWE-SDKSRLRM 58 + +G + RL APMAG+ FR + + G GL + M ++ E +KS Sbjct: 38 LTVGGRTVPGRLWLAPMAGLGHAAFREVVEDYGGCGLLFTGMCNARAVPTERPEKSEAFS 97 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 EP Q+ G++P+ MA+ AR G +D+NMGC + ++ G+ LL+ P Sbjct: 98 WRAGEPPRLVCQLFGAEPEHMAEGARRVQAEGFFGVDLNMGCSVSAIIKRGCGADLLRDP 157 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AVD+PV +K RTGW+P+ + ++A+ ED G L H R Sbjct: 158 ERAVRMVAAVRRAVDIPVFVKFRTGWSPDPQPAVDLARRFEDAGADCLVFHPRVAPDRRT 217 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 I VK VSIPV+ NGD+ P +LD TG D + +GR A RPW+F Sbjct: 218 QPPRRAHIGLVKAAVSIPVMGNGDVFTPEDCANLLDDTGCDGVSLGRIAVARPWVFAAWT 277 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW 285 +D P P E L + H GPA+ R+ K + + Sbjct: 278 GMVDDDPDRNPAPWREAPLALLDALARRH---GPARAVRMFGKFLVY 321 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 124/238 (52%), Gaps = 7/238 (2%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + +I APMA T FR LC +GA T +E++S+ + +L +E I Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRNGIPMKLAYFTEEERPIH- 63 Query: 69 VQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 +Q+ GS+P+E+A A+ I E IDIN GC KV R A +LQ P ++ ++ E Sbjct: 64 IQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKE 123 Query: 128 VVNAVD---VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 V A+ +PV+ KIR G+ E E I + + G+ + IH RT F+G+A + Sbjct: 124 TVEALKPYGIPVSAKIRLGF--EKDEVERIVEELQKAGVSLIAIHARTAKQGFSGKALWH 181 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 I+ K+ S+P+I +GD+ + + T D +M+GRAA PWIF+E + D Sbjct: 182 RIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEKRD 239 >UniRef50_C1DY86 Dihydrouridine synthase-like family protein n=1 Tax=Micromonas sp. RCC299 RepID=C1DY86_9CHLO Length = 495 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 142/266 (53%), Gaps = 15/266 (5%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM------MSSNPQVWESDKSRLRMVHIDE 63 N L+ AP+ + PFR LC + G +TVSEM + NP +K+RLR H E Sbjct: 111 NELLLAPLTKGGNLPFRRLCVDFGCNVTVSEMVFARFLLRRNP----VEKARLRR-HPSE 165 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQ+A + E +AA + ++GA ID+N GCP + ++ G+ALL+ P ++ Sbjct: 166 K-LFGVQLATNQIVEGVNAAALAADAGADFIDLNCGCPIHETWKRGLGAALLKKPKKLER 224 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 ++ + + +P+T+KIR G ++A+ E+ G A+ IHGRT+ + A + Sbjct: 225 LVRGIADGTRLPLTVKIRLGAGGSEAPARQLAEAVENAGAAAVIIHGRTKEQRYTRAANW 284 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 D I ++++ IPV+ NGDI + R L +GA A M GR A +PWIF+E+ ++ Sbjct: 285 DLIGEIQRERGIPVVGNGDILTHYEHRDRLARSGAHAAMTGRGALIKPWIFKEVAEGVEW 344 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDF 269 P EV LC++ +E H F Sbjct: 345 APT--PEERVEVYLRLCSYFKE-HFF 367 >UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=Desulfovibrio RepID=Q72EB7_DESVH Length = 332 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 M++G L AP+AG+ FR + +G GL + M ++ E+ Sbjct: 1 MQVGARTAPGSLWLAPLAGVGHVAFREVIDNLGGCGLLFTGMCNARAVPTENPARSNAFT 60 Query: 60 HIDEPGIRTV-QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 E R V Q+ G+DP EMA+AAR G +DINMGC + R+ G+ LL+ Sbjct: 61 WRAEELERCVCQLFGADPSEMAEAARRVEAEGFFGVDINMGCSVAAIVRRGCGADLLRDE 120 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AVD PV +K RTGW+P+ + +A+ ED G AL H R Sbjct: 121 ERAVRMVESVRRAVDCPVLVKFRTGWSPDPQGAVALARRFEDAGADALVFHPRVAPDRRT 180 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 IR VK+ V+IPV+ NG++ P A ++L+ TG D + +GR A GRPW+F Sbjct: 181 RPPLRHHIRLVKEAVAIPVLGNGEVFTPGDAASMLETTGCDGISLGRIALGRPWVFAAWT 240 Query: 239 HYLD 242 +D Sbjct: 241 GLVD 244 >UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasidiella neoformans RepID=DUS3_CRYNE Length = 725 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 17/242 (7%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 AP+ + + PFR LC + GA +TVSEM + P V+ + + + + + VQ+AG Sbjct: 363 APLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAGG 422 Query: 75 DPKEMADAAR-----INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 P M AA I G +D+NMGCP V + AGSAL+ P + +L + Sbjct: 423 FPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMN 482 Query: 130 NAV-DVPVTLKIRTGWAPEHRNCEE-IAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 A+ D+P+T+K RTG A N + I + + G ALTIHGR+R ++ A+++ I+ Sbjct: 483 RALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEYIK 542 Query: 188 ----AVKQKVS------IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 A+++ V+ +P+ NGD +D +G D +M+ R A +PWIF EI Sbjct: 543 TCVTALRESVADANLPPVPIFGNGDCFSAASYYEEMDRSGVDGVMVARGALIKPWIFTEI 602 Query: 238 QH 239 + Sbjct: 603 KE 604 >UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammaproteobacteria RepID=DUSC_VIBPA Length = 322 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 101/319 (31%), Positives = 162/319 (50%), Gaps = 30/319 (9%) Query: 11 RLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT- 68 R++ PM G+ D R + E+ L V+E + QV D R+ G +T Sbjct: 2 RVVLGPMEGVLDHLMRQILTEINDYDLCVTEFVRVIDQVL-PDHVFHRLCPELMQGSQTT 60 Query: 69 ------VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 VQ+ G +P MA+ A E GA+ ID+N GCPAK VN+ G+ALLQ+P+++ Sbjct: 61 SGVPVHVQLLGQEPHWMAENAIRAAELGARGIDLNFGCPAKMVNKSKGGAALLQHPELIH 120 Query: 123 SILTEVVNAV--DVPVTLKIRTGWA-PEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 S++ +AV ++PV+ KIR GW PE +C EI + G LT+H RT+ + Sbjct: 121 SVVKACRDAVPANIPVSAKIRLGWENPE--DCFEIVDAIQSAGANELTVHARTKQGGYKA 178 Query: 180 -EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 E +++ I ++++ SIP+IANG+I + + ++ TG D+LM+ R A P + ++ Sbjct: 179 SEIKWEYINKIRERFSIPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNIPNLGNMVK 238 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW--YLQEHAP--ND 294 H P+ ++V LL + + + G KG + W YL++ P N+ Sbjct: 239 HNHT------PMVWSDVVDLLIYYSK--FEMKGD-KGLYYPNRVKQWFAYLRQSYPEANE 289 Query: 295 QFR--RTFNAIEDASEQLE 311 FR RTFN E ++ Sbjct: 290 LFREIRTFNKAAPIVEHIQ 308 >UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0F5_DESRD Length = 341 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 145/300 (48%), Gaps = 11/300 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDK-SRLRM 58 + IG L NR + +PM G+T R L ++ G GL +EM S++ + E + S + Sbjct: 13 LAIGDKSLTNRFLLSPMVGVTHVALRRLLHDFGGFGLHWTEMCSASAVLQEDPRISPVFR 72 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 H DE QI GS+P+ MA AAR + G +DINMGC V ++ AG+ALL+ Sbjct: 73 FHRDELATLVCQIMGSEPETMAAAARRIQDEGFFGVDINMGCCVAAVRQQGAGAALLRDI 132 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +I+ V AVD+P+ +K+R+GW + A+ G AL +H R Sbjct: 133 SRAAAIVDAVRQAVDIPLFVKLRSGWTDQGPVVVHAARACAKAGADALIVHPRLAPDRRT 192 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE-I 237 ++ IRAV + V +PV NG++ A A+L TG + +GR A RPWI E + Sbjct: 193 RPPQWRDIRAVCEAVDLPVFGNGNVFTADDATAMLRQTGCQGIALGRMAAARPWIAAEWL 252 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 H+ E P + V+ L + + + R+ RK ++++ A + R Sbjct: 253 GHFHPAPETYPKVAQRMVELLWTS--------FPEGQALRLYRKFMNYFAANFAFGHRLR 304 >UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dictyostelium discoideum RepID=DUS3L_DICDI Length = 671 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 5/236 (2%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV--HIDEP 64 N+LI AP+ + + PFR +C +GA +T+ EM + ++ E KS L ++ H E Sbjct: 321 NFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTT-KLLEGTKSELALLKRHPCED 379 Query: 65 GIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQI GS A I E A +DIN GCP V AG+AL++ P V+ Sbjct: 380 KF-GVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVEQ 438 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 +L + +++ P T+KIR G + + ++ + G A+T+HGR+RA ++ A + Sbjct: 439 LLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLANW 498 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 D ++ + SIP+I NGDI + + D + ++MI R A +PWIF EI+ Sbjct: 499 DYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIKPWIFTEIKE 554 >UniRef50_A4S604 Predicted protein (Fragment) n=2 Tax=Mamiellales RepID=A4S604_OSTLU Length = 287 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 5/234 (2%) Query: 9 RNRLIAAPMAGITDRPFRTLC-YEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPG- 65 R +L AP+ + PFR LC E GA + VSEM + + H + G Sbjct: 1 RGQLWLAPLTKGGNAPFRRLCASEFGAEVVVSEMAFARFLAKGARVERARVRRHEGDAGD 60 Query: 66 IRTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 QIA + +E +AA I + E GA +D+N GCP + ++ G+ALL+ P ++ + Sbjct: 61 CFGAQIATNAIEEGVNAALIASGEFGADFVDLNCGCPIHETWKRGLGAALLKKPAKLERL 120 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + + +DVP+T+KIR G IA+ E+ G A+ +HGRT+ + A+YD Sbjct: 121 VEGIASRIDVPLTVKIRLG-IDSSSQARRIAEGLENAGASAVVVHGRTKEQRYTKAADYD 179 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 IR + ++ +IP+I NGD+ AR ++++G A+M+GR A +PWIF+E + Sbjct: 180 VIRDIVRERNIPIIGNGDVLTWYDARDRMEHSGVAAMMVGRGALIKPWIFKEYR 233 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 122/241 (50%), Gaps = 14/241 (5%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFR-TLCYEMGAGLTVSEMMSS------NPQVWESDK 53 M IG + NRLI APMAG+T FR + G GL + M + NP+V S Sbjct: 1 MAIGGKTIANRLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKV--STV 58 Query: 54 SRLRMVHIDEPGIRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVNRKLAGS 112 R +D QI GS P+ MA AA RI E G +DIN GC A+ + R +G+ Sbjct: 59 FSWREKELDH---TVCQIFGSVPETMAKAAERIEAE-GFFGVDINCGCSARAICRFDSGA 114 Query: 113 ALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT 172 ALL PD+ ++ V AV++PV +K RTGW + + +A+L D G AL H R Sbjct: 115 ALLAKPDLAAQVVRAVRKAVNIPVIVKFRTGWKDDPAHAVSMARLFCDEGADALIFHPRV 174 Query: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 L +++ I VK V +PV NG++ A +L +G D + +GR A +PW Sbjct: 175 APDLRTRPPKWEYIGLVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIALAQPW 234 Query: 233 I 233 I Sbjct: 235 I 235 >UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4K9_9DELT Length = 339 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/313 (28%), Positives = 151/313 (48%), Gaps = 16/313 (5%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 AP+AG +D PFR L G + SEM+S + ++ ++ + E +Q+ G+ Sbjct: 14 APLAGYSDLPFRLLVKRHGCAVACSEMVSVKGMTFGNEGTQRLIATCPEDDPMVLQLFGA 73 Query: 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV---VKSILTE--VV 129 DP V+ G + D+N GCP +KV + +G L++ PD + S++ E Sbjct: 74 DPDLFGPVMDWLVDLGYRNFDLNAGCPVRKVLKSGSGVKLMEDPDTLVRIASVMVERATA 133 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 +A V +K R G+ + E+A+ ED G+ +T+H R +F G+A++ + + Sbjct: 134 HARGGQVGVKFRLGFDKGNDTYLELARRLEDAGVHWVTLHPRYGRQMFAGQADWSKLGLL 193 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 K+ VSIPV+A+GD+ ++ TG DA+M R A P IF + L G+ P Sbjct: 194 KRAVSIPVVASGDLFTAEDGVRCVEETGVDAVMFARGALYDPAIFDRYRTLLAGGQ---P 250 Query: 250 LPLA--EVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR------RTFN 301 P + + R++ H+R +F G + +R R + Y + R R + Sbjct: 251 EPRSGESLARIVREHIRLTREFEGDGRSFRKIRSIIPRYAKGLRGIRALRGSLLECRDWE 310 Query: 302 AIEDASEQLEALE 314 A+E+A+ + LE Sbjct: 311 ALEEAAATIAGLE 323 >UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7AQM0_BABBO Length = 355 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 118/238 (49%), Gaps = 13/238 (5%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI-----DE 63 R R +AAPM ++ PFR LC LT + M+ V + + R VH D Sbjct: 11 RPRYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFV---ENEKYRAVHFQTSDDDR 67 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 P I Q+ G D + AAR+ ++ +D+N+GCP GS LL PD+V Sbjct: 68 PLI--AQVCGDDAGTITQAARL-LKGHVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTG 124 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA--CLFNGEA 181 I++ V V + VT KIR ++ + E G +ALT+HGR R+ G A Sbjct: 125 IVSRVTREVGIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSEKGTNVGAA 184 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 ++D+IR +K ++ IPVIANG I L YTGADA+M + RP++F I + Sbjct: 185 DWDAIRIIKSRLRIPVIANGGIETFADVERCLSYTGADAVMSSESLLERPYLFSGITY 242 >UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=C7LQM9_DESBD Length = 324 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 AP+AG +D PFR LC+E G V+EM+S+ +++S + + D+ VQ+ GS Sbjct: 16 APLAGFSDLPFRLLCHEYGCHAAVTEMVSAKGLIYDSPGTNELLQTCDQDSPLVVQLFGS 75 Query: 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDV 134 + + + ++G + D+N GCP +KV + +G+ALL+ P+ + I +++A + Sbjct: 76 EEPFLVQSIERLRKAGFRYFDLNCGCPVRKVIKTGSGAALLKEPENLLKIAKSMIDAAEP 135 Query: 135 P-VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 + KIR GW ++A E+ G +T+H R A F G A++ ++ +K++V Sbjct: 136 GCMGFKIRLGWYVGQPVYLQVATKLEELGAGWVTMHPRFGAQGFTGHADWSHLKTLKERV 195 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 ++PVIA+GD+ A ++ T D++M R A P IF Sbjct: 196 TLPVIASGDLFHAEDAIKCIEQTSVDSIMFARGALNDPSIF 236 >UniRef50_B9CKJ9 tRNA-dihydrouridine synthase B n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKJ9_9ACTN Length = 361 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 143/283 (50%), Gaps = 9/283 (3%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID-EPGIRT 68 N ++ APMAG++D +R L GA L +EM+S + +K+ + +D EP I Sbjct: 38 NPVLMAPMAGVSDGAYRLLARAGGAALAYTEMVSVAGIHFGGEKTWQLVYPLDPEPDI-A 96 Query: 69 VQIAGSDPKEMADAA-RINVESGAQI--IDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ GS P++ +AA +I G ++ IDINM CP KV +K GSALL P I+ Sbjct: 97 VQLFGSKPEQFREAASQIAERLGPKLALIDINMACPVPKVVKKGEGSALLDNPVRAAEIV 156 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 ++ VDVPVT KIR G E A+ E G A+T+HGR + L+ G+A+++ Sbjct: 157 RACISEVDVPVTAKIRRGRTVGSECAPEFARALEAAGAAAVTVHGRFASQLYQGKADWNC 216 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 + V VSIPVI +GD+ A VL TG A+M+ R G PWIF + E Sbjct: 217 VERVVCAVSIPVIGSGDVMSAHDAARVLKTTGISAVMLARGTYGDPWIFANTRRACAEKE 276 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 L P + + L A +H AR +WY + Sbjct: 277 LFCP----TLSQRLSAFKLHVHLLEAAHIHIARARSLSTWYFR 315 >UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicrobia RepID=B9XLX7_9BACT Length = 340 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 119/235 (50%), Gaps = 12/235 (5%) Query: 12 LIAAPMAGITDRPFRTLCYEMG-AGLTVSEMM----SSNPQVWESDKSRLRMVHIDEPGI 66 L APM +TD PF + G A + +E SSN + W L + + G Sbjct: 9 LALAPMQDVTDLPFMKVISSYGSADVYYTEYFRVHGSSNLEKW-----ILESITKNPTGQ 63 Query: 67 RTV-QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 + Q+ G+D + +A+ + +D+N+GCPA V RK AG LL+ P V SIL Sbjct: 64 PVIAQMIGNDIPSLVRSAKELQQYPIVAVDLNLGCPAPIVYRKCAGGGLLREPKRVDSIL 123 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + +A+ V T+K R G+ +E+ + I LT+HGRT ++ E YD Sbjct: 124 GALRDAISVKFTVKTRIGFDSTG-VFDELLPIFAKHSIDLLTVHGRTVQEMYRSEVHYDF 182 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 I Q VS PV+ANG++ KA VL +TGA LMIGR PW+F +I+H+ Sbjct: 183 IARAAQAVSCPVLANGNVYSAKKAEEVLQFTGARGLMIGRGVIRNPWLFHQIRHH 237 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 88/313 (28%), Positives = 141/313 (45%), Gaps = 11/313 (3%) Query: 11 RLIAAPMAGITDRPFR-TLCYEMGAGLTVSEMM---SSNPQVWESDKSRLRMVHIDEPGI 66 +L APM G+T R + G L +E + S P + K ++ I Sbjct: 8 KLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISSHKPSMRSLKKQIVKSGDIP---- 63 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 +VQI G++ + MA++A++ V+ GA +D+NMGCP K+ + GSA+L+ P + +L Sbjct: 64 LSVQIMGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVLA 123 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + V ++ KIR G+ EI Q D G L +H R R + G +++ I Sbjct: 124 SMREQVPCALSAKIRAGF-DNKEGVFEILQAIVDSGADYLAVHPRRRVDHYEGHSDWRII 182 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 A+K+K IPVI NGD+ A + T D +MIGR A PWIF + L E+ Sbjct: 183 SALKEKSPIPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIFLQTSQVLSDQEV 242 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQ-FRRTFNAIED 305 P ++ + DF +G K + Y + P FR+ + Sbjct: 243 FIP-NWEDIYHFYHGIAQAFSDFCDNEQGTLNKTKEMLMYFSVNLPEPAPFRKAIGRSQS 301 Query: 306 ASEQLEALEAYFE 318 E + L ++ + Sbjct: 302 IDEMMNKLHSFLK 314 >UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=2 Tax=Eumetazoa RepID=UPI000186DAF4 Length = 557 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 5/235 (2%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP-GIR 67 + +L +P+ + + PFR +C E GA +T SEM + + + K ++ E + Sbjct: 208 KEKLYLSPLTTLGNLPFRRICKEFGADITCSEMAMAT-SLLQGLKYEWALIKRHESEDLF 266 Query: 68 TVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 +Q+ G++P M A++ ES IDIN+GCP V +K GS LL+ V++S++ Sbjct: 267 GIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGLLRREKVLESVIK 326 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + + +P+T+K RTG + + + D G+ +T+HGR+R + A+++ I Sbjct: 327 SMSKVMSLPLTVKTRTGVYADKNVAHRLIPMFVDSGVSLITVHGRSREQRYTRTADWNYI 386 Query: 187 RAVKQKVS-IPVIANGDITD-PLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + S IPV NGD+ RA+ + +M+GR A +PWIF+EI+ Sbjct: 387 NECGKAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVGRGALYKPWIFKEIKE 441 >UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammaproteobacteria RepID=DUSC_VIBCH Length = 323 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 15/241 (6%) Query: 11 RLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT- 68 R+I PM G+ D R + ++ V+E + + D R+ + G +T Sbjct: 2 RVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRV-VNLLLPDHVFYRLCPELQQGSKTP 60 Query: 69 ------VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 VQ+ G DP MA+ A E GA ID+N GCPAK VN+ G+ALLQ+P+++ Sbjct: 61 SGVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIY 120 Query: 123 SILTEVVNAV--DVPVTLKIRTGWA-PEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ +AV +PV+ KIR GW PE +C EI LT+H RT+A + Sbjct: 121 QVVKACRDAVPAHIPVSAKIRLGWEDPE--DCFEIVDAVAQAKADELTVHARTKAGGYKA 178 Query: 180 -EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 E ++ I ++QK SIP+IANG++ + +A + TG D+LM+ R A P + ++ Sbjct: 179 SEIKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNLGNVVK 238 Query: 239 H 239 H Sbjct: 239 H 239 >UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S213_NEMVE Length = 570 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 118/236 (50%), Gaps = 6/236 (2%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66 ++L AP+ I + PFR +C + GA +T EM M +N + + L H E I Sbjct: 216 FSDKLYLAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQQSEWALVKRHSSE-DI 274 Query: 67 RTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ G+ P M A + E+ IDIN GCP V K AGSAL++ ++ I+ Sbjct: 275 FGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERKGKLQQIV 334 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHR--NCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 + + +D+P+T+KIR G + N ++ D G +TIHGR+R + A++ Sbjct: 335 QGMKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQRYTKSADW 394 Query: 184 DSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 D I V + S +PV NGDI A G +MI R A +PWIF EI+ Sbjct: 395 DYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAGVAGVMIARGAIIKPWIFTEIK 450 >UniRef50_Q3MB47 Dihydrouridine synthase, DuS n=6 Tax=Bacteria RepID=Q3MB47_ANAVT Length = 378 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 3/167 (1%) Query: 94 IDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCE 152 +D+NMGCPA ++ RK G LL P V+ IL E+ AV D P+T+K+R G+ Sbjct: 102 VDLNMGCPAPRIYRKNVGGGLLLSPGKVEQILAELRQAVSDRPLTVKMRVGFE-NTDTFY 160 Query: 153 EIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAV 212 EI + I L++HGRT +++G +YD I ++V PV+ANG+I A V Sbjct: 161 EILDIVNRHNIDLLSLHGRTVKDMYHGAVKYDLIAEAVKRVDCPVLANGNIHSATTALEV 220 Query: 213 LDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLL 259 L+ TGA +M+GR A G PW+F +I+ L GE + P+PL EV+ + Sbjct: 221 LERTGAAGVMVGRWAIGNPWLFNQIRQAL-RGEPITPVPLVEVRNYI 266 >UniRef50_C8QWB5 Dihydrouridine synthase DuS n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWB5_9DELT Length = 335 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 + G ++ L+ APMAG+T R L E G GL +EM+++ E+ +V Sbjct: 9 LEYGGLRISPPLLLAPMAGLTHSALRRLVQEQGGVGLLSTEMLAAKRLPHENPTLSPYLV 68 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + Q+ + P E+A A E GA ID+N+GCPA + R+ GS L++ P Sbjct: 69 RHPSEQPLSFQLLLTSPAEVAAAVASAEELGAAAIDLNLGCPAPDIRRQGGGSRLMEEPQ 128 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEI---AQLAEDCGIQALTIHGRTRACL 176 +V+ ++ E +P++ KIR G E N E + L ED G+ LT+H R R Sbjct: 129 MVRRLVQETRRRTALPLSAKIRLG---EELNAERLRAFCLLLEDAGVDLLTVHARLRGEP 185 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + + ++ + VK + IPV+ANG I A A L +GAD LMIGRAA PW+FR+ Sbjct: 186 YGRKPRWEWVGKVKHWLRIPVVANGGIFSAADAAACLAASGADGLMIGRAAAATPWLFRQ 245 Query: 237 I 237 + Sbjct: 246 L 246 >UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine synthase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792282 Length = 578 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 130/236 (55%), Gaps = 9/236 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 +N+L AP+ + + PFR +C E GA +T SEM+ S+ + ++ + I Sbjct: 230 KNKLYLAPLTTVGNLPFRRICKEFGADITCSEMVLSSSLLQGHNQEWALTKRHETEDIFG 289 Query: 69 VQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 +Q+ G++P +A +A++ E+ +D+N+GCP ++ ++ AGS LL ++ L Sbjct: 290 IQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSGLLLRSKKLEVCLKS 349 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + +DVP+T+K R+G + ++ + +D G+ +T+HGR+R + A+++ + Sbjct: 350 MRTVLDVPLTVKTRSGVNKDQNVAHDLIPMFKDSGVSLITVHGRSRDQRYTKMADWNYVN 409 Query: 188 AVKQKVS-IPVIANGDIT---DPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQ 238 + S + V ++GDI D + ++ D TGA MIGR A +PWIF+E++ Sbjct: 410 ECAKLASPVQVFSSGDIMSYEDYVDSKLQFPDITGA---MIGRGALIKPWIFKELK 462 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 150/313 (47%), Gaps = 20/313 (6%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR--LRMVHIDEPGIRTVQIA 72 AP+AG TD PFR LC E GA + +EM+S ++ S + L D P + VQ+ Sbjct: 22 APLAGFTDLPFRLLCRENGARVAHTEMISVKGLIYNSQGTWDLLATAPADTPLV--VQLF 79 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G+DP A R E G ID+N GCP +KV + AG+AL++ P + I+ + A Sbjct: 80 GADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIMQTIGRAA 139 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAED---CGIQALTIHGRTRACLFNGEAEYDSIRAV 189 V +K+R P + + + +L + G+ +T+H RT + G A++ ++ + Sbjct: 140 PVQAGVKLRL---PADGSTDGLLRLRDTLARAGVSWITLHPRTARQGYGGLAQWSALSRM 196 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG-ELLP 248 + +P++A+GD+ + AR + TG D +M R A P IF+ L TG E P Sbjct: 197 AESSPVPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIFKA---DLATGAEEDP 253 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIA-RKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 A + L+ H +L Y P++ + R + Y++ Q R+ A +D Sbjct: 254 CTDTASIAALVRRH-GQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQARKGIIACQD-- 310 Query: 308 EQLEALEAYFENF 320 EA E Y + Sbjct: 311 --WEAFEQYADQL 321 >UniRef50_A6GHV6 Dihydrouridine synthase family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHV6_9DELT Length = 321 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 120/236 (50%), Gaps = 24/236 (10%) Query: 17 MAGITDRPFRTLCYEM-----GAGLTVSEMM--SSNPQVWESDKSRLRMVHIDE--PGIR 67 M G+TD +R + G L VSE + + P V R+ + H E G + Sbjct: 1 MDGVTDGSYRECLTALFGGRSGISLCVSEFVRVTRQPVV-----ERVFLRHCPELARGGK 55 Query: 68 T-------VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 T VQ+ G +P MA AA V GA ID+N GCPAK VN G+ LL+ P Sbjct: 56 TRAGVPVFVQLLGGEPHWMARAAETAVALGAPGIDLNFGCPAKTVNSSDGGATLLKDPCR 115 Query: 121 VKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 V+++ V AV ++PVT+KIR GW + EIA+ AE G LTIHGRTR L+ Sbjct: 116 VEAVTRAVRAAVPAELPVTVKIRVGWE-DPSPVVEIARAAEAGGASWLTIHGRTRRQLYK 174 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 +Y++I + VS+ V+ANGD+ +G A MIGR A GRP +F Sbjct: 175 PPVDYEAIGRAQAAVSMAVVANGDLFGVPSLFEAAQRSGCTAFMIGRGAMGRPELF 230 >UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Eukaryota RepID=B5X496_SALSA Length = 654 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 11/244 (4%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDE 63 Q +++L AP+ + PFR +C GA +T EM M +N +S + L H E Sbjct: 304 QVDFKDKLYLAPLTTCGNLPFRRICKRFGADITCGEMAMCTNLLQGQSSEWALLKRHESE 363 Query: 64 PGIRTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 + VQ+ G P M A + N + +DIN GCP V +K G L+ + + Sbjct: 364 -DLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGCGLMTRTNKFE 422 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 I+ + + +DVP+T+KIRTG + ++ + G+ +T+HGR+R + A+ Sbjct: 423 QIIRGMNSVLDVPLTVKIRTGVQEKANIAHKLIPEMKKWGVSMITLHGRSREQRYTKSAD 482 Query: 183 YDSIRAVKQKVS-IPVIANGDIT---DPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +D I Q S IP+ NGDI D +KAR T +M+ R A +PW+F EI+ Sbjct: 483 WDYINTCSQLASPIPLFGNGDILSYYDAMKARE----TDVSGIMLARGALIKPWVFTEIK 538 Query: 239 HYLD 242 D Sbjct: 539 ERRD 542 >UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Magnoliophyta RepID=DUS3L_ARATH Length = 700 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 10/249 (4%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66 R++L AP+ + + PFR LC +GA +T EM M +N ++ + L H E + Sbjct: 345 FRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DL 403 Query: 67 RTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQI GS P ++ I+ E IDINMGCP V K AGSALL P +K+I+ Sbjct: 404 FGVQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNIV 463 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + V+ P+T+K+RT + + + + G A+TIHGR+R ++ A++D Sbjct: 464 EVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKSADWDY 523 Query: 186 IRAVKQKVS--IPVIANGDITDPLK-ARAVLDYTGADALMIGRAAQGRPWIFREIQ---H 239 I + + + VI NGD+ L + D + MI R A +PWIF EI+ H Sbjct: 524 IYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIARGALIKPWIFTEIKEQRH 583 Query: 240 Y-LDTGELL 247 + + +GE L Sbjct: 584 WDITSGERL 592 >UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI000058804E Length = 655 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 4/227 (1%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG 73 AP+ + + PFR +C ++GA +T EM M +N +S + L H E I VQ+ G Sbjct: 287 APLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQGQSSEWALLRRHPSE-DIFGVQLCG 345 Query: 74 SDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 P M A + N IDIN+GCP V K AGS L+ + I+ + + + Sbjct: 346 GFPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVRGMSSVL 405 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 D+P+T+K+RTG ++ +I + D G +T+HGRTR ++ A++D ++ Q Sbjct: 406 DIPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTVHGRTREQRYSKLADWDYLKDCVQA 465 Query: 193 VS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 P I NGDI + + +GA MI R A +PWIF EI+ Sbjct: 466 ADPHPFIGNGDILSYEDSNFFREQSGATGQMIARGALIKPWIFTEIK 512 >UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME Length = 604 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 22/244 (9%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNP------QVWESDKSRLRMVHI 61 R +L+ +P+ + + PFR +C E GA +T EM + P Q W L H Sbjct: 255 FREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLKGMGQEWA-----LTKRHQ 309 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQI--IDINMGCPAKKVNRKLAGSALLQYPD 119 E + VQ+ G++P + AA++ + AQ+ ID+N+GCP + ++ GSAL++ + Sbjct: 310 SE-DVFGVQLCGNNPNMLNQAAQV-IHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTN 367 Query: 120 VVKSILTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +++ + D +P T+K+RTG + E+ L E+ G A+T+HGR+R + Sbjct: 368 ILELTVRSCAALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRYT 427 Query: 179 GEAEYDSIRAVKQKVS-IPVIANGDI---TDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 A + I K +PVI NGDI D ++ R + + ++MIGR A +PWIF Sbjct: 428 KHANWAYIEECAAKAKCMPVIGNGDILSYEDYMERRTLAPHVC--SVMIGRGALIKPWIF 485 Query: 235 REIQ 238 +EI+ Sbjct: 486 QEIK 489 >UniRef50_Q4UGK9 Putative uncharacterized protein n=2 Tax=Theileria RepID=Q4UGK9_THEAN Length = 359 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 37/277 (13%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI-----DEPG 65 + I APM ++ PFR LC A L + M+ + +++ S+ R +H D+P Sbjct: 27 KFIVAPMVDQSELPFRLLCRRYSADLAYTPMLHA--KIF-SENENYRNIHFHTSSDDKPL 83 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 I Q G+DP A+ +++ IDIN+GCP + GS LL+YP ++ Sbjct: 84 I--AQFCGNDPSAFILASSY-IKNDVSAIDINLGCPQGIAKKGRYGSFLLEYPQLI---- 136 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN--GEAEY 183 T+ +VD L R GW ++C+ G +ALT+HGR R+ E ++ Sbjct: 137 TKGFASVDTKFMLFTR-GWLFSVQSCQA-------NGCKALTVHGRHRSETKTRISECDW 188 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE------- 236 DSI+ +K +V+IPVIANG I + LDYTGADA+M A P++F Sbjct: 189 DSIKIIKSRVNIPVIANGGIETFEDVKRCLDYTGADAVMSSEAILENPYLFSGKMYNNID 248 Query: 237 -IQHYLDTGELLPPLPLAEVK----RLLCAHVRELHD 268 + YL + P ++ +K ++L ++ + HD Sbjct: 249 IFEEYLSILKGSPRQKISCIKGHAFKILYKYINQHHD 285 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 148/308 (48%), Gaps = 22/308 (7%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV--HI-DEPGIRTV 69 I APM ++ FR LC ++GA + M+ S ES + R +M HI D P + V Sbjct: 27 IVAPMVDQSELAFRMLCRKLGADCCYTPMLHSR-LFAESAEYREKMFEHHIQDRPLV--V 83 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q G+DPK + AA++ VE +D+N+GCP + GS L+ + VK+ + + Sbjct: 84 QFCGNDPKTVLAAAKM-VEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTLS 142 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG--EAEYDSIR 187 +++PVT+KIR P+ E A + ++ G LT+HGRT+ E +D IR Sbjct: 143 AGLNIPVTVKIRV--FPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVNWDIIR 200 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 +K++++IPVIANG I L+ TG D +M P +F + + GE Sbjct: 201 RIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADTNN--TPGEDT 258 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTFNAIEDA 306 L LA + L CA Y PA +I R H+ L Q+ + R A + Sbjct: 259 SFLELAR-QYLECA------TLYPPASD-KIVRAHLFKILFQDLRVHSDLRDALAAAKSQ 310 Query: 307 SEQLEALE 314 E +E ++ Sbjct: 311 QEMVEIVD 318 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 125/255 (49%), Gaps = 38/255 (14%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSN-------------PQVWESDKSRL 56 R+I APM G+ D R + ++G VSE + N P++ S +++ Sbjct: 2 RIILAPMEGLLDFRLREILTQIGGYDECVSEFIRVNDTLLPPHRFFRTAPELKNSSRTKS 61 Query: 57 RMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQ 116 D P +QI GSDP MAD A + GA IDIN GCPA VNR G+ALL+ Sbjct: 62 -----DTP--VKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLK 114 Query: 117 YPDVVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDC-------GIQALT 167 P+++ SI+ V N V ++PVT K+R G+ E +LA DC G + + Sbjct: 115 EPNLMYSIVKAVRNVVPENIPVTAKMRLGY--------ESTELALDCAKALEEGGAKEIV 166 Query: 168 IHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAA 227 +H RT+ + A ++ I +K + I VIANG+I A +G D +MIGR A Sbjct: 167 VHARTKTDGYKPPAYWEWIAKIKSILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRGA 226 Query: 228 QGRPWIFREIQHYLD 242 P I I+ L+ Sbjct: 227 VTNPSIALLIKKKLE 241 >UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54ES7_DICDI Length = 344 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDK-SRLRMVHIDEPGIRTVQ 70 I APM + PFR L + G +T + M M++ E+ + S + +DEP I VQ Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAARDSDFTINKLDEPLI--VQ 115 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 ++ +E+ AA V+ Q IDIN GCP + V ++ G+ LL +P+ + ++ ++ N Sbjct: 116 FGVNNAEELVSAAE-KVKDYCQGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINN 174 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 V +P+++KIR + ++ E+A+ AE G+ +T+HGRT A + +YD+I+ VK Sbjct: 175 RVPIPISIKIRV--QSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHPVDYDAIKLVK 232 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 V++PV ANGD+ ++ + + TG + +M R P +F+ Sbjct: 233 DNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQ 277 >UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseriaceae RepID=C5TM05_NEIFL Length = 321 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 131/255 (51%), Gaps = 13/255 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV----HIDEPG 65 +LI APM G+ D R L +G VSE + V S + L+ V H + Sbjct: 2 QLILAPMQGLVDDVMRDLLTRIGGFDECVSEFVRITHTV-HSRATWLKYVPEIAHANRTT 60 Query: 66 IRT---VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 T VQ+ GSD + MA A V GA ID+N GCPA VN+ G+ LL+ PD++ Sbjct: 61 AGTPCTVQLLGSDAENMAVNALEAVRFGADKIDLNFGCPAPTVNKHKGGAVLLKEPDLIY 120 Query: 123 SILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I+ + + +P+T K+R G+ + E A E+ G ALT+H RT+ + Sbjct: 121 HIVHTLRQRLPQHIPLTAKMRLGYEDKSLALE-CASAIENGGACALTVHARTKVEGYEPP 179 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A ++ +R ++ V+IPV ANGD+ + + +G +++M+GR A RP + R+I+ Y Sbjct: 180 AHWEWVRKIRDAVNIPVTANGDVFNLQDYLDIKSVSGCNSVMLGRGAVIRPDLARQIKQY 239 Query: 241 LDTGELLPPLPLAEV 255 + GE + AEV Sbjct: 240 -ENGETVKDTDFAEV 253 >UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota RepID=B9HRE5_POPTR Length = 362 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 125/249 (50%), Gaps = 10/249 (4%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66 R +L AP+ + + PFR +C +GA +T EM M +N ++ + L H E + Sbjct: 13 FRGKLYLAPLTTVGNLPFRRVCKALGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DL 71 Query: 67 RTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQI G+ P + I+ E IDINMGCP V K AGS+LL P +KSI+ Sbjct: 72 FGVQICGAYPDTVTRTVELIDQECTVDFIDINMGCPIDIVVNKGAGSSLLTKPMRMKSII 131 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 V+ P+T+K+RTG+ + + G A+TIHGR+R ++ A++D Sbjct: 132 EATSGTVEKPITVKVRTGYFEGKSRIDSLIVDIGKWGASAVTIHGRSRQQRYSKLADWDY 191 Query: 186 IRAVKQKV--SIPVIANGDITDPLKARA-VLDYTGADALMIGRAAQGRPWIFREIQ---H 239 I +K S+ V+ NGD+ + D + MI R A +PWIF EI+ H Sbjct: 192 IYQCARKAPDSLQVLGNGDVFSFVDWNNHKSDCPELSSCMIARGALIKPWIFTEIKEQRH 251 Query: 240 Y-LDTGELL 247 + + +GE L Sbjct: 252 WDISSGERL 260 >UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xenopus RepID=DUS3L_XENLA Length = 640 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 15/239 (6%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSN-----PQVWESDKSRLRMVHI 61 RN+L AP+ + PFR +C +GA +T EM M +N P W + L+ H Sbjct: 293 FRNKLYLAPLTTCGNLPFRRICKRLGADITCGEMAMCTNLLQGQPSEW----ALLKRHHS 348 Query: 62 DEPGIRTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ I VQ+ G+ P M A + N +DIN+GCP V +K G L+ + Sbjct: 349 ED--IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNK 406 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I+ + + +DVP+T+KIRTG + ++ D G+ +T+HGR+R + Sbjct: 407 FEQIVKGMNSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRYTKL 466 Query: 181 AEYDSI-RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A ++ I + K +P+ NGDI A L TG +M+ R A +PW+F EI+ Sbjct: 467 ANWEYIDQCAKIASPVPLFGNGDIISYEDANRALQ-TGVAGVMLARGALFKPWLFTEIK 524 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 12/246 (4%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 + R+I APM G+ D R L +G VSE + V S + L+ V G + Sbjct: 12 KTRIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTV-HSRATWLKYVPEIANGNK 70 Query: 68 T-------VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 T VQ+ GSD MA A V GA ID+N GCPA VNR G+ LL+ P++ Sbjct: 71 TFSGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPEL 130 Query: 121 VKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + I+ + + +P+T K+R G+ + E +AE G LT+H RT+A + Sbjct: 131 IFHIVKTLRERLPAHIPLTAKMRLGYEDKSPALECACAIAEG-GACGLTVHARTKAEGYE 189 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A ++ IR ++ V IPV ANGD+ + +G +++M+GR A RP + R+I+ Sbjct: 190 PPAHWEWIRKIRDSVDIPVTANGDVFSLQDYIGIKTISGCNSVMLGRGAVIRPDLARQIK 249 Query: 239 HYLDTG 244 Y + G Sbjct: 250 QYENGG 255 >UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaproteobacteria RepID=DUSC_PASMU Length = 312 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 143/293 (48%), Gaps = 20/293 (6%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT- 68 R+I APM G+ D R L ++ L VSE + Q+ + + + G+ Sbjct: 2 RVILAPMQGVLDPFVRQLLTQVNQYDLCVSEFVRVVDQLLPTKVFYRLCPELYQQGLTAS 61 Query: 69 -----VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ G P+ +A+ A+ +E G+ ID+N GCP+K VN G++LL+ P+++ Sbjct: 62 GTPVRVQLLGQHPQWLAENAQRAIELGSHGIDLNCGCPSKTVNGSNGGASLLKQPELIYH 121 Query: 124 ILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE- 180 + AV +PV++K+R GW EIA + G +TIHGRT+ + + Sbjct: 122 ATKALRAAVPKALPVSVKVRLGW-DNSEQAFEIADAVQQGGATEITIHGRTKMDGYRADR 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + I V+Q++SIPVIANG+I D +A L TG LMIGR A P + + ++ Sbjct: 181 INWAKINDVRQRLSIPVIANGEIWDWQSGQACLAETGCQDLMIGRGALNIPNLSQVVKFN 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR-KHVSWYLQEHAP 292 +P AEV LL + + F Y +AR K YL++ P Sbjct: 241 ------QAKMPWAEVLILLHQYAHTENQF--DTGFYHVARIKQWLGYLKKAYP 285 >UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=Proteobacteria RepID=B3PD21_CELJU Length = 321 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/274 (34%), Positives = 137/274 (50%), Gaps = 21/274 (7%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGL--TVSEMMSSNPQ-----VWESDKSRLRMVHIDE 63 R++ APM G+ + R + +G GL V+E + Q V+ L H Sbjct: 2 RIMLAPMEGVVEHHVRDILTRLG-GLDGCVTEFIRVTDQKLPYKVFYKYAQELEN-HCQT 59 Query: 64 PGIR--TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 P VQ+ GS P+ MA A+ V GA+ ID+N GCPAK VN G+ LL+ PD V Sbjct: 60 PNGTPVKVQLLGSKPEPMALNAQELVRYGAKAIDLNFGCPAKTVNSHEGGACLLRTPDRV 119 Query: 122 KSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 SI+ V +AV +PV+ KIR G+ + + E AQ E G LT+H R++A + Sbjct: 120 YSIIKAVRDAVPRAIPVSAKIRLGFE-DRTSYMENAQAVEAAGADELTVHARSKADGYKP 178 Query: 180 EAEYDSIRAVKQKVSIPVIANGDI---TDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 A + I +K + IPVIANG+I D L+ R + + +M+GR P + R+ Sbjct: 179 PAYWHYIADIKAALKIPVIANGEIWSVEDYLRCR---EQSQCADVMLGRGLLSCPDLARQ 235 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY 270 I+ YL GE PL EV ++L + R Y Sbjct: 236 IKAYL-AGEEYRPLTWGEVCQILFDYYRLTTPLY 268 >UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4RQU5_OSTLU Length = 608 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 6/239 (2%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM--MSSNPQVWESDKSRLRMVHIDEPG 65 +++L AP+ + + PFR +C +GA +T EM +S Q S+ + LR H E Sbjct: 245 FKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGLPSEWALLRR-HKSE-D 302 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQI G P + ++ ++ IDINMGCP V +K GS +L+ P ++++ Sbjct: 303 IFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKPKKMETV 362 Query: 125 LTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 + A+ +T K R + + R A + G A+T+HGRTRA + A++ Sbjct: 363 IRAASAALGKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGRTRAQRYRSVADW 422 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 + + K+ S+P+I NGD+ L+ D M+ R A +PW+F EI+ D Sbjct: 423 EYTKLTKESSSVPLIGNGDVYMQKDYYTHLEEHSVDTCMLARGALIKPWLFTEIKERRD 481 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 117/234 (50%), Gaps = 23/234 (9%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV----------WESDKSRLRMVHID 62 + APM G ++ +R L GA + +EM++ + + W + ID Sbjct: 13 VLAPMVGNSELAWRILARRYGADICYTEMVNCDTFIRSKINPLSNRWYTTNK------ID 66 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 P I +QI G+D +M + I ++ IDIN+GCP + + GS L+ VK Sbjct: 67 RPLI--IQICGNDVNKMLKVSLI-LQEYCDAIDINLGCPQEIARKGNYGSFLMDDLLKVK 123 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA--CLFNGE 180 I+T + N + VPVT KIR + E E A++ E G + LT+HGRTR L G Sbjct: 124 EIVTVLSNNLKVPVTCKIRIFESIEKS--VEYAKMIEQAGCKMLTVHGRTRDQRGLNTGL 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 A +D IRA+K ++IPVI+NG+I + ++YT D +M+ P IF Sbjct: 182 ASWDHIRAIKASLNIPVISNGNIINNSDIDNCVEYTKCDGVMVAETHLYNPLIF 235 >UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammaproteobacteria RepID=DUSC_ECOLI Length = 315 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 160/324 (49%), Gaps = 34/324 (10%) Query: 11 RLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT- 68 R++ APM G+ D R L E+ L ++E + Q+ +++ H P ++ Sbjct: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLP-----VKVFHRICPELQNA 56 Query: 69 ----------VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 VQ+ G P+ +A+ A VE G+ +D+N GCP+K VN G+ LL+ P Sbjct: 57 SRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 Query: 119 DVVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 +++ + AV +PV++K+R GW + E IA + G L +HGRT+ Sbjct: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQG 175 Query: 177 FNGE-AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 + E ++ +I ++Q+++IPVIANG+I D A+ + +G DA+MIGR A P + R Sbjct: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR--KHVSWYLQEHAPN 293 +++ P +P EV LL + R + G Y +AR + +S+ +E+ Sbjct: 236 VVKYN------EPRMPWPEVVALLQKYTR--LEKQGDTGLYHVARIKQWLSYLRKEYDEA 287 Query: 294 D---QFRRTFNAIEDASEQLEALE 314 Q R N D + ++A++ Sbjct: 288 TELFQHVRVLNNSPDIARAIQAID 311 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 13/240 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 R + APM ++ +R L GA L + M+ ++ + + R + DE VQ Sbjct: 19 RYVVAPMVDQSELAWRLLGRRHGAQLCYTPMLHASVFLKDPKYRRDALASCDEDQPLVVQ 78 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 +DP+ + A+R+ V +D+N+GCP G+ L D++ ++ V Sbjct: 79 FCANDPEVLVQASRLVV-GHCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLARMVQRVHT 137 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR--ACLFNGEAEYDSIRA 188 VDVP+T K+R PE AQ+ E G Q LT+HGRTR G A ++ IRA Sbjct: 138 QVDVPITCKVRV--FPEVEKTVRYAQMLEAAGCQVLTVHGRTREQKGPHTGLASWEHIRA 195 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 VK+ V IPVIANG+I A L TGADA+M P++F TG L P Sbjct: 196 VKRSVKIPVIANGNIQYLEDAERCLRETGADAVMSAEGHLHNPYLF--------TGRLAP 247 >UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AKJ6_DESPS Length = 354 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/314 (27%), Positives = 145/314 (46%), Gaps = 17/314 (5%) Query: 12 LIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSN--PQVWESDKSRLRMVHIDEPGIRT 68 L APM G++ R+L ++G GL +EM+++ P + S L + P I Sbjct: 44 LSLAPMVGLSHSALRSLIADLGGCGLFYTEMLAARRLPHENPAVSSYLHTTPCERPLIYQ 103 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 + IA D K +A A G +DIN+GCPA V R AG+AL + D V+ I++ Sbjct: 104 LFIA--DVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSA 161 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 D+ ++ KIR G + + + ++ E G+ L +H R F + + + Sbjct: 162 RRHTDLTLSAKIRVGHVGKEAHLLDFCKMLEAEGVDLLAVHARYHGEKFCRKPRWQLLAP 221 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ---HYLDTGE 245 + +++ IP+ ANG I AR L+ +GA LM+GR A RPW+F EI + LD Sbjct: 222 ICEQLDIPIFANGGIFSVDDARRCLELSGAAGLMLGRGAVERPWLFNEIAREVYGLD--- 278 Query: 246 LLPPLPLAEVK--RLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAI 303 LP+AE + + V+++ + + P + ++ + + H Sbjct: 279 ----LPVAESRPVEIYFRFVQKMVEIFAPERQLGRIKEFTHYIAKNHQFGHHLASAVQKS 334 Query: 304 EDASEQLEALEAYF 317 E ++A E ++ Sbjct: 335 HTVEEAVQAAEDFY 348 >UniRef50_Q1N033 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N033_9GAMM Length = 321 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 12/231 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT- 68 +L APM G+ D RTL G V+E + Q+ ++S R+ + +T Sbjct: 2 QLSLAPMEGLVDVHMRTLLTRGGYFDYCVTEFLRVTTQLL-PERSFRRICPESDHQWKTP 60 Query: 69 ------VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 +Q+ GSDP MA+ A E GA +++IN GCP++ VN + G+ LLQ+PD + Sbjct: 61 AGTPVHLQLLGSDPVAMAENACRAAELGAPVVNINFGCPSRFVNGRCGGAYLLQFPDQIH 120 Query: 123 SILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +IL V A+ VP+T K+R G+ + AQ E G++ + IH RT+ + Sbjct: 121 TILESVRKALPEHVPLTAKMRLGFKDDALALAN-AQAMESAGVRDICIHARTKVQGYRPP 179 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 A + I+ +KQ+V +P+IANG+I + A + + +M+GR A P Sbjct: 180 AHWHQIKNIKQQVKVPIIANGEIWNRRDYEACKAASHCEHVMLGRGAVADP 230 >UniRef50_Q4FQ57 Possible tRNA-dihydrouridine synthase n=24 Tax=Gammaproteobacteria RepID=Q4FQ57_PSYA2 Length = 350 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 124/245 (50%), Gaps = 16/245 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGL------TVSEMMSSNPQVWESD---KSRLRMVHIDE 63 + APM G+TD R + ++ A L +VSE + V + K + H + Sbjct: 34 LLAPMEGLTDPLMRQILTQIAADLGRPYDWSVSEFIRVTQHVLPAHVFYKYVPELHHDAK 93 Query: 64 PGIRT---VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 T +Q+ GS+ + MA+ A E GA IDIN GCPAK VN GS LL P+V Sbjct: 94 TASGTSIHIQLLGSEAQLMAENAAHACELGAPAIDINFGCPAKTVNSHRGGSVLLDEPEV 153 Query: 121 VKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + I++ V AV ++PV+ KIR G+ R ++I G LTIH RT+ + Sbjct: 154 MYDIISAVRQAVPANIPVSAKIRLGYTDTSR-MDDIRGAIAASGADWLTIHARTKTQGYK 212 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A +D I+A + IPVIANG+I + A+ + +G LM+GR A RP + ++ Sbjct: 213 PPAYWDKIQAFN-SLKIPVIANGEIWNSEHAQNCMAQSGTTHLMLGRGAVTRPDLIAQVD 271 Query: 239 HYLDT 243 LD+ Sbjct: 272 CGLDS 276 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 126/263 (47%), Gaps = 30/263 (11%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSN--PQVWESDKSRLRMVHIDEPGIRT 68 + + APM ++ FR +C + G L S M S ++ ++ + D+P I Sbjct: 20 KTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDPMI-- 77 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ G+DP+ + A++ ++ + IDIN GCP R G+ LL PD+++ I++ + Sbjct: 78 VQFCGNDPETLVKASKF-IDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERIISTL 136 Query: 129 VNA-VDVPVTLKIRTGWAPEHRNCEEIAQLA---EDCGIQALTIHGRTRAC--LFNGEAE 182 + + PV+ KIR +H + + L E G + +HGRT + G A Sbjct: 137 SESDLKCPVSCKIRI---LDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTGPAN 193 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ---- 238 +++++ +K + SIP IANG I++ + L+YTGADA+M PW+F+ + Sbjct: 194 WEALKILKSRCSIPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENPWLFQGFKTPEA 253 Query: 239 ------------HYLDTGELLPP 249 YLD L PP Sbjct: 254 INNKPSQFQIALEYLDYCILYPP 276 >UniRef50_C5LCP2 tRNA-dihydrouridine synthase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LCP2_9ALVE Length = 606 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 129/244 (52%), Gaps = 16/244 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV--HIDEPGIRTVQ 70 + AP+ + + PFR LC +G +TVSEM + + + +++ ++ H DE I +Q Sbjct: 239 MLAPLTTVGNLPFRRLCVSLGCEVTVSEMALAE-SLLKGNRAEHALLKKHPDEK-IFGIQ 296 Query: 71 IAGSDPKEMADAARINVE--SGAQIIDINMGCPAKKVNRKLAGSAL---LQYPDVVKSIL 125 +AG P M+ A + +DINMGCP + +++K AGSAL L + V S + Sbjct: 297 VAGGFPDMMSRCAEMLCREMDDFDFLDINMGCPLEGLHKKGAGSALMTRLGKAEGVMSSM 356 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 +V +A D +T+KIRT ++ +++A A G+ + +HGRT ++ A++ Sbjct: 357 AKVCHAYDKNLTVKIRTAHYGQNHVYDKVAARAVSSGVDGVVLHGRTAQQRYSRPADWTF 416 Query: 186 IRAVKQKV-------SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 + + ++P++ GDI D +A ++ G + LMIGR A +PWIF EI+ Sbjct: 417 HTKCRTAMDSAVPGNAVPLVGCGDIIDWREAIERMETPGVEGLMIGRGALIKPWIFTEIK 476 Query: 239 HYLD 242 + D Sbjct: 477 EHRD 480 >UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L63_SACD2 Length = 318 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 125/275 (45%), Gaps = 26/275 (9%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDE----PG 65 R+ APM G+ D R + +G + V+E + V + + +DE P Sbjct: 2 RIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETPA 61 Query: 66 IRT-------VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 + VQ+ GS+P +A A E GA ID+N GCPAK VNR G+ LL Sbjct: 62 LYRGAHCPVRVQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACLLDET 121 Query: 119 DVVKSILTEVVNAV--DVPVTLKIRTGWAPEH---RNCEEIAQLAEDCGIQALTIHGRTR 173 D V I+ V A PVT KIR G+ RN + I E G L +H R++ Sbjct: 122 DTVFDIVNAVRKATPASTPVTAKIRLGYLNRDSYLRNAKAI----EAAGANELCVHARSK 177 Query: 174 ACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 + A + I ++ +SIPV+ANG+I + + + M+GR +P + Sbjct: 178 TDGYQPPAYWHYIGDIRDNLSIPVVANGEIWSLEDFKRCAEQSKCSDFMLGRGLLAKPDL 237 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHD 268 EI+ Y+ GE PL EV CAHVR L + Sbjct: 238 ALEIKQYM-AGEAFNPLSWDEV----CAHVRTLFE 267 >UniRef50_Q884C6 tRNA-dihydrouridine synthase C n=13 Tax=Proteobacteria RepID=DUSC_PSESM Length = 317 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 109/193 (56%), Gaps = 4/193 (2%) Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q+ GSDP +A+ A E GA ++D+N GCPAK VNR G+ LL+ P+++ +I+++V Sbjct: 67 LQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHTIVSQV 126 Query: 129 VNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 AV D+PVT K+R G+ + A+ D G + +H RT+ + A ++ I Sbjct: 127 RRAVPKDIPVTAKMRLGYE-NTDGALDCARALADGGAAQIVVHARTKVDGYKPPAHWEWI 185 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 +++ V +PV+ANG+I R + GA +MIGR RP + R+I GE Sbjct: 186 ARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVARPDLARQIAAA-QKGEE 244 Query: 247 LPPLPLAEVKRLL 259 + P+ AE++ +L Sbjct: 245 VVPMTWAELQPML 257 >UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZQ6_CHRSD Length = 340 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 10/204 (4%) Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q+ GSDP+ +A A GA+ +D+N GCPAK VNR G++LL+ P+ V +++ V Sbjct: 74 LQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGGASLLRQPERVHTVVRAV 133 Query: 129 VNA---VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 A + + VT KIR G+ +H A+ AE G L +H RTR + A ++ Sbjct: 134 AEALAPLGIAVTAKIRLGFDDKHVAL-ACAEAAESGGAAHLVVHARTRREGYRPPAHWEW 192 Query: 186 IRAVKQKVSIPVIANGDI---TDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 I ++ ++SIPVIANGDI D KAR + +G +M+GR PW+ R I+H+ Sbjct: 193 IGRIQARLSIPVIANGDIWTLEDYWKARTL---SGCADVMLGRGMLADPWLARRIKHWQR 249 Query: 243 TGELLPPLPLAEVKRLLCAHVREL 266 GE+LP P + +L A+ + + Sbjct: 250 HGEMLPATPWSARAEILHAYAQRM 273 >UniRef50_UPI00016C52C4 dihydrouridine synthase DuS n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C52C4 Length = 326 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 6/184 (3%) Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ+ G D MA++A E GA +D+N GCPA VNR G+ALL++P ++ I+ + Sbjct: 52 VQLLGGDSGRMAESAVRAHELGATAVDVNFGCPAPTVNRHDGGAALLRHPLRIREIVGAI 111 Query: 129 VNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 A+ VPV+ K+R GW E A +A + G +TIHGRTR + ++ I Sbjct: 112 RAALPPHVPVSAKLRLGW-DTLDAIHENATMAAEGGAAWITIHGRTRVAGYAPPIHWEPI 170 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 V++++ IPV+ANGDI + D TG M+GR A P + R + L L Sbjct: 171 GRVRERLGIPVVANGDIWTVEDFKRCRDVTGCKHFMLGRGALADPRLARRVAAELG---L 227 Query: 247 LPPL 250 +PP+ Sbjct: 228 VPPV 231 >UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3RKU4_TRIAD Length = 581 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 6/238 (2%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDE 63 Q N+L AP+ + + PFR +C GA +T SEM + +N + + +S +V E Sbjct: 230 QINFSNKLFLAPLTTVGNLPFRRICKTFGADVTCSEMALCTN--LLQGQQSEWALVKRHE 287 Query: 64 P-GIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 + +Q+ G+ P +A + IN +D+N+GCP V + AGSAL+ + + Sbjct: 288 SEDLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSALMGRANKL 347 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + I+T + + + VP+T+K+RTG + ++ + G +T+HGR+R + A Sbjct: 348 QQIVTGMSSILSVPLTVKLRTGILAKKSTAHKLIPQIREWGASLVTLHGRSREQRYTKLA 407 Query: 182 EYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ I +P+I NGDI ++ T +MI R A +PW+F EI+ Sbjct: 408 DWSYINECATAADPMPLIGNGDILSFEDYLEHMNNTNVAGVMIARGALIKPWLFTEIK 465 >UniRef50_C9M7Q0 Dihydrouridine synthase family protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7Q0_9BACT Length = 317 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/305 (27%), Positives = 135/305 (44%), Gaps = 10/305 (3%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MA +T R L +GAGLT +EM S+ V ++ + ++ Q+ D Sbjct: 1 MASVTTAAVRRLAVRLGAGLTHTEMASATGLVRGGRQTLRVLDQTNDTRPLVAQLFAGDA 60 Query: 77 KEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVP 135 + + A + + G + INM CP KV ++ AGSALL PD S++ E+ P Sbjct: 61 ESLVRGAEVALTCGPFDALGINMACPMPKVLKRGAGSALLDRPDEAASMVRELCR-FGFP 119 Query: 136 VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSI 195 V K+R A EE Q+ + G + +HGRT + G+A+ S++ + + Sbjct: 120 VWPKVRKEPAGSGITTEEFVQILFEAGASCVAVHGRTPGQRYEGQADRKSVKELCRAFPG 179 Query: 196 PVIANGDITDPLKARAVLDY--TGADALMIGRAAQGRPWIF-REIQHYLDTGELLPPLPL 252 ++A+GD+ A VLDY GA A+++ R P+I R + E P L Sbjct: 180 RILASGDV---FTAEDVLDYLSAGAGAVLLARGFIADPFIVPRSLDLLSGRPEARP--SL 234 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEA 312 A + C EL +GP + ++ + + A RRT I D +E Sbjct: 235 ASRYEIFCEFAGELERLHGPKMALGMVKRFAPGFFKFQAGAGALRRTLGPINDWNEMQIR 294 Query: 313 LEAYF 317 L+ +F Sbjct: 295 LDEWF 299 >UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax=Trypanosomatidae RepID=Q582L4_9TRYP Length = 528 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 122/241 (50%), Gaps = 16/241 (6%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM--MSSNPQVWESDKSRLRMVHIDEPG 65 N+L+ AP+ + + PFR +C E GA +TV EM + + ++ +S+ S LR H E Sbjct: 164 FSNKLVLAPLTTVGNLPFRRVCKEYGADITVGEMAIVHNLNRLQKSEWSLLRR-HSSED- 221 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQ--IIDINMGCPAKKVNRKLAGSALLQYP-DVVK 122 I +QIA S P + A+ ESG +DIN GCP KV G L + + ++ Sbjct: 222 IFGLQIAVSRPHDAITWAQAVEESGFSYDFVDINCGCPVDKVVLSGCGCGLWERKGNRLR 281 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLA--EDCGIQALTIHGRTRACLFNGE 180 ++ +V PVT+K R G P+ N E +A E G A+TIHGR+R + Sbjct: 282 DVVQSLVAHQSKPVTIKCRMG--PDEENPELHKHIADYETWGAAAVTIHGRSRRQRYTKL 339 Query: 181 AEYDSIRAVKQKVSIPVIANGDI---TDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 A + I S+PVI NGDI D ++ RA + MIGR A +PWIF EI Sbjct: 340 ANWSYIDNCASLTSLPVIGNGDIFSCEDIVEHRA--QSKNVSSFMIGRGALVKPWIFEEI 397 Query: 238 Q 238 + Sbjct: 398 K 398 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 131/281 (46%), Gaps = 21/281 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR- 67 R APM G ++ +R L GA + +EM+ + + S + G R Sbjct: 10 RPYFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWYTTSEGDRP 69 Query: 68 -TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQI G+ P+ M +AA I ++ ID+N GCP K + G+ L + + I+ Sbjct: 70 LVVQICGNSPEVMLEAALI-IQDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIVK 128 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR----ACLFNGEAE 182 + + ++VPV KIR + E E A++ E+ G L +HGRTR A + G A Sbjct: 129 VLSSGLNVPVFCKIRVFGSIE--KTVEYAKMIEEAGCSLLAVHGRTRDQRGAAM--GFAS 184 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE------ 236 + IRA+K+ + IPV++NG+I L+YTG D +M+G A P IF Sbjct: 185 WKHIRAIKENLRIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLIFTGEDRSCL 244 Query: 237 --IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKG 275 I YLD P A+V+ + R L++++ G Sbjct: 245 EIIGEYLDICMEFP--GSADVRHIKSHMFRLLYNYFSMNPG 283 >UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamiellales RepID=Q010A0_OSTTA Length = 639 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 12/241 (4%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMV--HIDE 63 + + ++ AP+ + + PFR +C ++GA +TVSEM M+SN + + D+ +V H E Sbjct: 266 EFKGKIYVAPLTTVGNLPFRRICTDLGADITVSEMAMASN--LLKGDRKEWALVRRHPIE 323 Query: 64 PGIRTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 +QI G P M A + + E ID+NMGCP V K AG +L++ D +K Sbjct: 324 KCF-GIQICGGYPDLMTRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDTDRLK 382 Query: 123 SILTEVVNAVDVPVTLKIRTGW--APEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ + + PVT+K+R G+ P +I A+ G A T+HGRTR ++ Sbjct: 383 RVVRSMTSVSSTPVTIKLRMGYFDDPSRYVAHDIISKAKSWGAYAATLHGRTREQRYSRL 442 Query: 181 AEYDSIRAVKQKVS---IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 A++ I + +P+I NGD+ + MIGR A +PW+ EI Sbjct: 443 ADWSYIHRCADASALNNLPLIGNGDVYTYQDWNEQIANEKISTCMIGRGAIIKPWLMTEI 502 Query: 238 Q 238 + Sbjct: 503 K 503 >UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Metazoa RepID=DUS4L_HUMAN Length = 317 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 49/320 (15%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHIDEPGIRTV 69 + APM + FRTL + L + M+ + V +S K+R D P I V Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFV-KSIKARDSEFTTNQGDCPLI--V 86 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q A +D + ++DAARI V A IDIN GCP + + G+ L+ P++V+ ++ +V Sbjct: 87 QFAANDARLLSDAARI-VCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVR 145 Query: 130 NAVDVP---VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 N V+ P V++KIR + + ++ Q AE G+ +T+HGRT A + YDSI Sbjct: 146 NQVETPGFSVSIKIRIH--DDLKRTVDLCQKAEATGVSWITVHGRT-AEERHQPVHYDSI 202 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF--------REIQ 238 + +K+ +SIPVIANGDI +A V TG D +M+ R P +F + I Sbjct: 203 KIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIW 262 Query: 239 HYLDTG-ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 ++D EL P +C H +H+ Y+ E + Q + Sbjct: 263 DWVDIALELGTP--------YMCFH------------------QHLM-YMMEKITSRQEK 295 Query: 298 RTFNAIEDASEQLEALEAYF 317 R FNA+ S ++ L ++ Sbjct: 296 RVFNALSSTSAIIDYLTDHY 315 >UniRef50_C6PST5 Dihydrouridine synthase DuS n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PST5_9CLOT Length = 236 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 83/161 (51%), Gaps = 1/161 (0%) Query: 79 MADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTL 138 M AR + S IIDINMGCP V + GSALL SI+ + V +T+ Sbjct: 1 MEKMARSDYFSKFDIIDINMGCPVPNVFKSGQGSALLGDLKKASSIIKGCKKSGKV-ITV 59 Query: 139 KIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVI 198 K R G + E A++ E G +TIHGRTR +++G +D I K V IPVI Sbjct: 60 KFRVGIKEDEMIAAEFAKMCEASGADMITIHGRTRNMMYHGTPYFDQIEQAKSVVRIPVI 119 Query: 199 ANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 ANG I A ++ TGAD +MI R A P+IF E+ H Sbjct: 120 ANGGIFSKEDADKMMKLTGADGVMIARYAIENPFIFSELTH 160 >UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A55 Length = 669 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 119/248 (47%), Gaps = 15/248 (6%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGIRT 68 N + P+ + PFR +C GA +T EM M +N + + L H E + Sbjct: 324 NDKLYLPLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQQSEWALLKRHESE-DVFG 382 Query: 69 VQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQI G P M A IN + +DIN GCP V +K G L+ + I+ Sbjct: 383 VQIEGCFPDTMTRCAELINNNTEVDFVDINSGCPIDLVFKKGGGCGLMTRTRKFEEIVKG 442 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + +DVP+T+KIRTG + ++ + G+ +T+HGR+R + A++D I Sbjct: 443 MNYVLDVPLTVKIRTGVQEKTNIAHKLIPEMKKWGVSMITLHGRSREQRYTKLADWDYIS 502 Query: 188 AVKQKVS-IPVIANGDI---TDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ---HY 240 + S +P+ NGDI D + A+ TG +MI R A +PWIF EI+ H+ Sbjct: 503 TCSKLASPVPLFGNGDILSYEDAMMAKE----TGVSGIMIARGALIKPWIFTEIKEKRHW 558 Query: 241 -LDTGELL 247 + +GE L Sbjct: 559 DISSGERL 566 >UniRef50_C4QAZ6 tRNA-dihydrouridine synthase, putative n=1 Tax=Schistosoma mansoni RepID=C4QAZ6_SCHMA Length = 492 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 124/276 (44%), Gaps = 31/276 (11%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWES---------------DKSRLRMVHI 61 M ++ P R LC E GA +SE + + S D S + Sbjct: 1 MVRVSTHPMRLLCLEYGADYVISEELIDQRIIRSSRVVNAELNTIDFVLPDGSVTFRTSM 60 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 +E VQ+ +P AA++ +E+ ID+NMGCP + G+ALL P++V Sbjct: 61 EEKNRVIVQLGTPEPGTALQAAKM-LENDVMGIDVNMGCPKAYSIKGGMGAALLTKPEIV 119 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 K ILT + + +PVT KIR PE +A+L E G+ A+T+HGRT Sbjct: 120 KEILTTLTTNLRIPVTCKIRI--LPELEKTIALAKLIESTGVAAITVHGRTINERPVHRN 177 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDY----TGADALMIGRAAQGRPWIFREI 237 + I+ + V IPV+ANG D ++ ++Y T A ++I RAA P IF+ Sbjct: 178 RNEVIQTIANSVGIPVLANGGSHDIIRNHEDIEYFRQLTSAAGVVIARAAMSNPAIFKSF 237 Query: 238 QHYLDTGELLPPLPLAE--VKRLLCAHVRELHDFYG 271 Q + PLP E + R L VR H G Sbjct: 238 Q-------VDEPLPKLEEIICRYLTLSVRYDHHIAG 266 >UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T8_9CHLO Length = 662 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 110/241 (45%), Gaps = 7/241 (2%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66 R +L AP+ + PFR +C G +T EM M +N + + L H E I Sbjct: 303 FRGKLYLAPLTTTGNLPFRRICKRYGVDITCGEMAMVTNLLQGQPAEWALLRRHPSE-DI 361 Query: 67 RTVQIAGSDPKEMADAAR-----INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 Q+ G M+ + + + G IDINMGCP V K AGS LL+ P + Sbjct: 362 FGAQVCGGYSDSMSRCMQLLEDEVVSKGGLDFIDINMGCPIDLVCNKGAGSMLLEKPARM 421 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + ++ + P+TLK R G+ R EI D G+ +T+HGR+R ++ A Sbjct: 422 EQLVRASAPLLSCPLTLKTRMGYFDNKRVAHEIIPKMVDWGLAGMTLHGRSRQQRYSRLA 481 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++D I + I +I NGD+ ++ G MI R A +PWIF EI+ Sbjct: 482 DWDYINQCARASPIQLIGNGDVFSYHDYVKNVEGQGVATCMIARGALIKPWIFTEIKERR 541 Query: 242 D 242 D Sbjct: 542 D 542 >UniRef50_B9PN28 tRNA-dihydrouridine synthase, putative n=3 Tax=Toxoplasma gondii RepID=B9PN28_TOXGO Length = 1220 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV--HIDEPGIRT 68 RLI AP+ + + PFR LC E+GA +TVSEM + V + +S L ++ H E Sbjct: 820 RLILAPLTTVGNLPFRRLCVELGAEVTVSEMAVAKSIV-DGKQSELSLLKRHKSET-FFG 877 Query: 69 VQIAGSDPKEMADAARI--NVESGAQIIDINMGCPAKKVNRKL-AGSALLQYPDVVKSIL 125 VQIAG P+ + I + + ID+N CP +++R+ AG+ +L +P ++S++ Sbjct: 878 VQIAGGTPEVLNACTDILASEDVSCDFIDLNAACPLVQLHRRFKAGACMLDHPKRLESLV 937 Query: 126 TEVVNA-VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + +VPVT+K+RT + + + D G AL +HGRT + A++ Sbjct: 938 ESMTTRHPEVPVTVKLRTANQGKKQVLHSFIRRLGDAGAAALIVHGRTAQQRYTKAADWS 997 Query: 185 SIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 + ++ + S P+I GDI + L +D LMI RAA +PW+F EI Sbjct: 998 YVAQCREALDSSTPLIGCGDIFSSPEFEFRLASGASDGLMIARAALVKPWVFTEI 1052 >UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like (S. cerevisiae) n=2 Tax=Taeniopygia guttata RepID=UPI000194DF67 Length = 718 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 7/238 (2%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM--MSSNPQVWESDKSRLRMVHID 62 + +++ +L AP+ + PFR +C GA +T EM ++ Q S+ + L+ H + Sbjct: 368 KLEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQSSEWALLKRHHTE 427 Query: 63 EPGIRTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 + I VQ+ G+ P M A + N +DIN+GCP V +K G AL+ + Sbjct: 428 D--IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKF 485 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + I+ + + +DVPVT+KIRTG + ++ + G +T+HGR+R + A Sbjct: 486 EQIVRGMNSVLDVPVTVKIRTGVQEKVNVAHKLIPRIREWGASMVTLHGRSREQRYTRSA 545 Query: 182 EYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ I + S +P+ NGDI A + G +MI R A +PW+F EI+ Sbjct: 546 DWHYIAECARLASPMPLFGNGDILSYEDANRAMQ-MGVSGIMIARGALIKPWLFTEIK 602 >UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovibrionaceae RepID=A1VHK2_DESVV Length = 449 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 137/305 (44%), Gaps = 5/305 (1%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 AP+AG +D FR LC + GA + +EM+S+ ++ S +R + E VQ+ G Sbjct: 37 APLAGYSDLSFRLLCRKAGAAVCCTEMVSAKGLIYYSPGTRDLLATTPEDAPLVVQLFGC 96 Query: 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQ-YPDVVKSILTEVVNAVD 133 DP M A +E G + D+NMGC KV + G+A+L+ P + + A Sbjct: 97 DPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVARAMLRTAGA 156 Query: 134 VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 V K R GW ++ + D G +T+H R F+GEA + ++ + + V Sbjct: 157 GRVGFKFRLGWDVGQEVWADLGRALADLGAGWVTLHPRYARQGFSGEARWSTLGELVRAV 216 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLA 253 S+PVIA+GD+ L TG ++M R A P +F + + G P Sbjct: 217 SVPVIASGDLFTAADGVRCLRETGVASVMYARGALNDPGVFHAHRERV-AGRPDPGYTPQ 275 Query: 254 EVKRLLCAHVRELHDFYGPAKGYRIA-RKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEA 312 ++ L+ H EL Y P + + R V Y++ H P + R A E L+ Sbjct: 276 RLRALITRHA-ELARQYAPGRSALLKMRTFVPRYVR-HLPGARALRQHLASCFEWEMLDE 333 Query: 313 LEAYF 317 L A F Sbjct: 334 LLATF 338 >UniRef50_B6KUE9 Dihydrouridine synthase domain-containing protein n=4 Tax=Eukaryota RepID=B6KUE9_TOXGO Length = 653 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 114/240 (47%), Gaps = 19/240 (7%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGL-----TVSEMMSSNPQVWESDKSRLRMVH----- 60 + I APM I PFR C + GA L T+ + ++ + + D S + +H Sbjct: 255 KWILAPMVRIGILPFRLECLKYGADLVYTEETIDHKLLNSVRTFNEDFSTIDFLHKSEKT 314 Query: 61 ------IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSAL 114 ++E G +Q+ SD AA + V +D+NMGCP G+AL Sbjct: 315 CVFSTCLEERGKVVMQLGTSDATRALKAAML-VAQDVAAVDVNMGCPKSFSINGGMGAAL 373 Query: 115 LQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA 174 L+ P + IL + +D+PVT KIR H+ + A+L E+CGI+A+ IH R Sbjct: 374 LKTPLIATDILKTLRRNLDIPVTCKIRL-LDTIHKTID-FARLCENCGIEAIAIHARETH 431 Query: 175 CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 + A +D A+K ++IP+IANGD A + GAD+LM R A P IF Sbjct: 432 ERPSHRAHWDLFPALKSSLAIPLIANGDFLTRRDADVFQEKIGADSLMFARGAMWDPSIF 491 >UniRef50_A2DHB4 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2DHB4_TRIVA Length = 312 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 12/230 (5%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI---DEPGIRT 68 + APMA + D FR LC + G L + ++++ V + K R R V D Sbjct: 15 IFLAPMADVNDYSFRKLCRQNGVSLCWTGFINAHHWVTRT-KQRDRDVWFTTRDNEKNLV 73 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALL---QYPDVVKSIL 125 VQ+ GS+ +E+ A+ +VE+ +I++N GC +R G L+ ++ D ++ Sbjct: 74 VQLLGSNLEELVSCAK-DVENFCDMIELNCGCTHCFASRSGCGFFLIDTQKHRDSALILI 132 Query: 126 TEVVNAVDVPVTLKIRT----GWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 ++ +++ PV++KIR P + AQ E G+ +T+H RT+ G+ Sbjct: 133 QNLIKSINKPVSIKIRLISDDNSVPSLERTVKFAQDLERVGVSLITVHARTQQADKKGDV 192 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 +YD+I+AV Q VS+PVIANG I+ +A+ ++ TGA A+M G+ P Sbjct: 193 DYDAIKAVVQAVSVPVIANGGISSLEQAQEIIQRTGAYAVMAGQCFFKNP 242 >UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coelomata RepID=DUS3L_HUMAN Length = 650 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 9/237 (3%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66 +R +L AP+ + PFR +C GA +T EM + +N + + L H E I Sbjct: 303 IRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCE-DI 361 Query: 67 RTVQIAGSDPKEMADAARI---NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ G+ P M A + VE +DIN+GCP V +K G AL+ + Sbjct: 362 FGVQLEGAFPDTMTKCAELLSRTVE--VDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQ 419 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+ + +DVP+T+KIRTG + D G+ +T+HGR+R + A++ Sbjct: 420 IVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADW 479 Query: 184 DSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 I Q S +P+ NGDI A + TG +MI R A +PW+F EI+ Sbjct: 480 QYIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIKE 535 >UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypanosoma cruzi RepID=Q4DCG2_TRYCR Length = 529 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66 +N+L+ AP+ + + PFR +C GA +TVS M + N + + L H E + Sbjct: 168 FKNKLVLAPLTTVGNLPFRRVCKSYGADITVSSMSLVHNLNRLQKGEWSLLRRHESED-V 226 Query: 67 RTVQIAGSDPKEMADAARINVESGAQ--IIDINMGCPAKKVNRKLAGSALLQYPD-VVKS 123 +QIA S P+ A+ SG IDIN GCP + + G L + D ++ Sbjct: 227 FGLQIAVSQPQSAQTWAKAIEASGYSYDFIDINCGCPVQMIMSAGCGCGLWERRDNRLRD 286 Query: 124 ILTEVVNAVDVPVTLKIRTG-WAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 I++ +V PV++K R G A + E E G A+TIHGR RA + A Sbjct: 287 IVSSLVQHQSKPVSIKCRIGAGANSSASLHEKIGDYEGWGADAVTIHGRFRAQRYTKLAN 346 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLD----YTGADALMIGRAAQGRPWIFREIQ 238 ++ I + + S+PVI NGDI ++D Y + MIGR A +PWIF EI+ Sbjct: 347 WEYIDSCAARTSLPVIGNGDI---FSYEDIIDHRERYPHVSSYMIGRGALIKPWIFEEIK 403 Query: 239 H 239 Sbjct: 404 Q 404 >UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera RepID=Q17M24_AEDAE Length = 578 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 30/250 (12%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNP------QVWESDKSRLRMVH 60 +++L +P+ + + PFR +C E G +T EM S P Q W L H Sbjct: 226 NFKDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACSVPIINGMMQEWA-----LTKRH 280 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 E + VQI G + K ++ A ++ E + +D+N+GCP + + GSALL+ + Sbjct: 281 PSE-DLFGVQICGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRRN 339 Query: 120 VVKSIL---TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 +++ ++ + ++ D T+K R G E+ E+ G +TIHGRT+ Sbjct: 340 ILEVMIQSCSRILADYDKEFTVKTRMGIYANKYVAHELVPKFEEWGASLVTIHGRTKEQR 399 Query: 177 FNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGAD-------ALMIGRAAQ 228 + +A++D IR Q+ SIP+ NGDI DY A +M+GR A Sbjct: 400 YTKKADWDYIRQCAQQAKSIPIYGNGDIF------CYQDYLDAKERAPELAGVMVGRGAL 453 Query: 229 GRPWIFREIQ 238 +PW+F+EI+ Sbjct: 454 IKPWVFQEIK 463 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 139/299 (46%), Gaps = 34/299 (11%) Query: 2 RIGQYQL-RNRL-----IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR 55 ++G Y+ RN L APM T FR LC + GA + + M S + + + K+ Sbjct: 38 KLGGYEFFRNVLKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHS--KNFATCKTY 95 Query: 56 LRMVHIDEPGIR--TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113 R P R VQ G++P+ + AA+ +E ID+N+GCP + R GS Sbjct: 96 RRDYWSTCPEDRPLVVQFCGNEPEWVVKAAKY-IEDHCDAIDLNLGCPQQIARRGNYGSF 154 Query: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR 173 LL P ++ I+ E+ + VP+ KIR P + ++A ++ G Q LTIHGRT+ Sbjct: 155 LLDKPHIILPIVQELHKHIKVPIFCKIR--LLPNLDDTIKLALQLQEAGCQLLTIHGRTK 212 Query: 174 --ACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 +G A + +IR +++++SIPVIANG + L+ TGAD +M P Sbjct: 213 EQKGHNSGIANWKAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANP 272 Query: 232 WIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAK-GYRIARKHVSWYLQE 289 F ++ +P+ +V RE DF K + R H+ L+E Sbjct: 273 SFFSGLK-----------VPIYQV-------AREYIDFTEIYKTSIHVTRSHIFKMLKE 313 >UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricales RepID=DUS3_COPC7 Length = 676 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 17/247 (6%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGIR 67 + + AP+ + + PFR +C ++GA +T EM ++++ ++ L H E I Sbjct: 310 KGKTYLAPLTTVGNLPFRRMCVKLGADITCGEMGLATSFLAGSKEEWSLVRRHPSEK-IF 368 Query: 68 TVQIAGSDPKEMADAARI---NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +Q+AG+ P + A + +G +D+N GCP V + +GSALL + I Sbjct: 369 GIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAGSGSALLDNAGKLGKI 428 Query: 125 LTEVVNAV-DVPVTLKIRTGWAPEHRNCEEI-AQLAEDCGIQALTIHGRTRACLFNGEAE 182 + + A+ ++P+T+KIRTG N ++ +++ + A+T+HGRTR + A+ Sbjct: 429 IQGMNRALGEIPLTVKIRTGVKEGRNNAHKLMPRISAEWSASAITLHGRTRQQRYTKLAD 488 Query: 183 YDSIR----AVKQKVS------IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 +D I+ AV+ + + +P+ GD ++ G D +MIGR A +PW Sbjct: 489 WDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINNYGVDGVMIGRGALIKPW 548 Query: 233 IFREIQH 239 IF EI+ Sbjct: 549 IFTEIKE 555 >UniRef50_A4RVX6 Predicted protein n=2 Tax=Ostreococcus RepID=A4RVX6_OSTLU Length = 371 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 97/172 (56%), Gaps = 5/172 (2%) Query: 70 QIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 QI GS+P + AAR + E A ID+N GCPA V K AGS+LL+ P+ V + + V Sbjct: 70 QIMGSEPWLLELAARHLATEKSAPRIDLNCGCPANVVTGKGAGSSLLRDPEYVYACVKAV 129 Query: 129 VNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + VT+K+R+G+ + E A + G + +++H RTRA ++G A ++ Sbjct: 130 ADGARGSGAHVTMKLRSGY-DDSSLLRENLLAAREAGARFVSLHARTRAQGYSGRANWEE 188 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 I K + IPV+ NGD+T P +A +L + AD +M+GR A P IFR I Sbjct: 189 IAFAKDVLDIPVLGNGDVTSPQRAAELLRVSDADGIMLGRGAVQDPLIFRRI 240 >UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular organisms RepID=DUSC_PSEPK Length = 323 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 12/227 (5%) Query: 15 APMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT----- 68 APM G+ D R + +G V+E + ++ + S ++ G RT Sbjct: 6 APMEGLVDNILRDVLTRVGGIDWCVTEFIRVCDRLLPA-SSFDKLAPELRQGARTAAGVP 64 Query: 69 --VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQ+ GSDP +A+ A + E GA +ID+N GCPAK VN+ G+ LL+ P+++ +I+ Sbjct: 65 MRVQLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLHAIVR 124 Query: 127 EVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 EV AV ++PVT K+R G+ E LAE G L +H RT+ + A ++ Sbjct: 125 EVRRAVPANIPVTSKMRLGFDSPDGALECATALAEG-GSAHLVVHARTKVEGYKPPAHWE 183 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 + V+ V +PV ANG+I R + +GA+ +M+GR RP Sbjct: 184 WVARVQDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRP 230 >UniRef50_A3JG66 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=A3JG66_9ALTE Length = 335 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 112/237 (47%), Gaps = 10/237 (4%) Query: 11 RLIAAPMAGITDRPFR-TLCYEMGAGLTVSEMMSSN-----PQVWESDKSRLRMVHIDEP 64 R+I APM G+ D P R TL G V+E + P+++ L + Sbjct: 2 RIILAPMEGLVDAPIRETLTKVGGIDRCVTEFIRVTHGMLPPRIFYKYAPELHNNSLTRV 61 Query: 65 GIRT-VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 G+ VQ+ GSDP MA E GA +DIN GCPAK VN+ G L++ P+++ Sbjct: 62 GVPVAVQLLGSDPHMMARHGAKAAELGATQVDINFGCPAKTVNKHKGGCVLMREPELMHE 121 Query: 124 ILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I V AV D+ VT K+R G+ AQ + G + IH R++ + A Sbjct: 122 ITAAVRQAVPADILVTAKMRLGYDDRSMGV-ACAQALDAAGAGEIVIHARSKTDGYKPPA 180 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ I ++ V VIANGDI + +G D +MIGR RP + R+I+ Sbjct: 181 YWEEIAKAREAVKAKVIANGDIFTVADYWRCREVSGCDDVMIGRGLVARPDLARQIR 237 >UniRef50_B0EC90 tRNA-dihydrouridine synthase, putative n=2 Tax=Entamoeba RepID=B0EC90_ENTDI Length = 340 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 109/216 (50%), Gaps = 8/216 (3%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR--TVQ 70 I APM +D FR L G L + M+ S V ES R +V+ +P R +Q Sbjct: 26 ILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFV-ESKVYRNEVVNSLDPKERPIIIQ 84 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + GSD EMA A+ ++S IDIN+GCP K + G+ L D K I+ V+ Sbjct: 85 VVGSDANEMARTAKF-LQSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIVNAVIE 143 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT--RACLFNGEAEYDSIRA 188 AV++PV K+R + E + + + L E CGI + +HGRT N A ++ I Sbjct: 144 AVNIPVYCKVRV-FEDEDKTMKFVEMLQE-CGIWGIAVHGRTINEKQSMNYHARWNYIAK 201 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 +K+++ IPVIANG++ K T +D MIG Sbjct: 202 IKEQLKIPVIANGEMRSREKIEECKKVTHSDGYMIG 237 >UniRef50_B8P3J2 Predicted protein (Fragment) n=3 Tax=Agaricomycetes RepID=B8P3J2_POSPM Length = 260 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 9/231 (3%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR--TVQ 70 IAAPM +D PFR L A L ++M+ S+ + + D + + + EP R VQ Sbjct: 2 IAAPMVNQSDLPFRRLVRRYNATLVYTQMLLSDRLLNDHDYLQFHLRGLGEPNDRPVVVQ 61 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD--VVKSILTEV 128 + G+DP+ + A + V+S ID N+GCP + G+ LL D +V++I + Sbjct: 62 LCGNDPELVVRAGK-QVQSHCDAIDFNLGCPQEAARDAHYGAYLLGQNDWPLVENIAASM 120 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC--LFNGEAEYDSI 186 N++ VPV+ K+R ++A+ E G +T+H RT + G A+ + I Sbjct: 121 SNSLTVPVSAKLRL--CQPASATLDLARRLEHAGASWVTLHARTVSVRRRRQGAADLEQI 178 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 + +K +SIPVI+NG++ L TGAD +M+G + P +F +I Sbjct: 179 KTLKDNLSIPVISNGNVRVWEDVERNLALTGADGIMVGESLLANPCLFADI 229 >UniRef50_B3LAS6 tRNA-dihydrouridine synthase, putative n=6 Tax=Plasmodium RepID=B3LAS6_PLAKH Length = 340 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 10/227 (4%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHIDEPGIRTV 69 + APM +++ FR LC L + M+ + V E +K R + DEP I Sbjct: 29 VLAPMVDLSELAFRLLCRNYNCHLAFTPMLHAKNFV-EHEKYRKGYFQSCKKDEPVI--A 85 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q G++ K + A +++ +D+N+GCP + + G+ LL D V ++++++ Sbjct: 86 QFCGNNSKIILSAIEY-IKNDVNAVDLNLGCPQQIAKKGNYGAFLLHKHDEVVNLVSDIT 144 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR--ACLFNGEAEYDSIR 187 N ++P+T KIR +++ + + ++ +T+HGRT+ + E +Y+ I+ Sbjct: 145 NNCNIPITCKIRK-IDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGVNIKECDYEIIK 203 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 +K++++IP+IANG I + L+YT ADA+M +P+ F Sbjct: 204 IIKERLNIPIIANGSIEHFEDVQKCLNYTKADAVMCAEILLEKPYFF 250 >UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=Schistosoma mansoni RepID=C4QMR1_SCHMA Length = 441 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 144/316 (45%), Gaps = 28/316 (8%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV--WESDKSRLRMVHIDEPGIRT 68 + + APM ++ +R L + G LT + M++S + + +S L+ D P I Sbjct: 11 KYVLAPMVDGSELAWRMLGRKYGVQLTFTPMINSTAFLINMKYRRSCLQFASEDRPLI-- 68 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ + P A++ V+ +D+N+GCP R G+ L + +K I++ Sbjct: 69 VQFCANSPDTFVRCAKL-VQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKEIISRA 127 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC--LFNGEAEYDSI 186 ++VPVT KIR E + A+L E G LT+HGRTR G A+++ I Sbjct: 128 SLELNVPVTCKIRIFSDVERT--VQYAKLLEAAGASMLTVHGRTREMKGQKTGLADWNQI 185 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ-------- 238 RAVK+ V IPVIANG+I LD T ADA+M P +F IQ Sbjct: 186 RAVKEAVKIPVIANGNIQYLSDVHQCLDSTKADAVMSAEGHLHNPALFLGIQPCIYDMCF 245 Query: 239 HYLDTGELLPPLPLAEVKR----LLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPND 294 YLD E P ++ R LC H + H Y G + K + LQ+ A Sbjct: 246 EYLDLVEKYP--TSMQIIRGHIFKLCHHALDEHSEYRSLIGTSQSTKGIKEILQKMA--- 300 Query: 295 QFRRTFNAIEDASEQL 310 + + ++++S +L Sbjct: 301 --NQCSSCVQNSSSEL 314 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 136/290 (46%), Gaps = 23/290 (7%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI---DEPGIR 67 R APM ++ FR LC GA L + M+ + V ES K R + D P + Sbjct: 17 RYHVAPMVDQSELAFRELCKRYGATLGYTPMIHARLFV-ESPKYRREIFSTSTRDRPLL- 74 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 Q +DP+ + AA + + +DIN GCP + R G+ L+ V++++ + Sbjct: 75 -AQFCANDPEILLRAATM-IAPYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIRK 132 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA---CLFNGEAEYD 184 + + VPVT KIR + + A++ E G Q + +HGRTR C + A + Sbjct: 133 LDEELPVPVTAKIRV--YDDLETTLKYAKMVEAAGAQIVAVHGRTREQKRCA-DIRANWA 189 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 IRA+K + +PV+ANGDI +ARA L+ TGAD ++ P +F + Y Sbjct: 190 YIRAIKDALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALFSDPPFYAAPT 249 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA----RKHVSWYLQEH 290 + P+PL V A V + +++ K Y + R HV W L H Sbjct: 250 DGYAPIPLDGV-----AAVDLMIEYFDICKSYTTSFSYIRGHV-WKLVGH 293 >UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGI3_9GAMM Length = 313 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEM-----MSSNPQVWESDKSRLRMVHIDEP 64 ++ APM G+ D R L +G L V+E ++ +V+ L Sbjct: 2 KITLAPMEGVMDHHMRALLTSLGGIDLCVTEFIRVISLTLPAKVYRRVSPELFNQSKTPS 61 Query: 65 GIRT-VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 G +Q+ G DP+ +A+ AR + G+ ID+N GCPAK VN+ G+ LL+ P+ + Sbjct: 62 GTPVRIQLLGQDPQCLANNARKALLVGSDGIDLNFGCPAKAVNKSKGGAILLKSPETLYK 121 Query: 124 ILTEVVNAVDVPVTL--KIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ EV ++ TL KIR G+A + E AQ + G L +H RT+ + A Sbjct: 122 IVKEVRASMHTCETLSVKIRLGYADKSLAIEN-AQAICEAGANELAVHARTKEEGYAPPA 180 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 + I +++ + IPV ANGDI A+ + +G +LMIGR A P Sbjct: 181 HWHWIAKIRESIDIPVTANGDIFSAEDAKRCHEISGCHSLMIGRGALATP 230 >UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacteria RepID=Q127F8_POLSJ Length = 344 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 120/237 (50%), Gaps = 12/237 (5%) Query: 12 LIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV- 69 ++ APM G+ D R + +G VSE + Q+ ++ R+V G RT+ Sbjct: 9 VLLAPMEGLLDFVLRDILTRVGGIDRCVSEFIRITDQLL-PERVFTRIVPELHNGGRTLA 67 Query: 70 ------QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 Q+ GSDP MA+ A G ID+N GCPA VNR G++LL+ P+ + + Sbjct: 68 GVPVRAQLLGSDPACMAENAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPETLLA 127 Query: 124 ILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I++ V AV +PV+ K+R G+ + R E +AE G L +H RT+A + A Sbjct: 128 IVSAVRRAVPAGMPVSAKMRLGYNDDSRAVECALAIAEG-GAGELVVHARTKAQAYKPPA 186 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ I ++ V IPV+ANG+I AR + +G LMIGR A P + I+ Sbjct: 187 YWERIADIRAAVQIPVVANGEIWTVDDARRCREASGCSMLMIGRGAVADPGLGLAIK 243 >UniRef50_C1MXD1 Dihydrouridine synthase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MXD1_9CHLO Length = 424 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 7/181 (3%) Query: 70 QIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 + GS+P + AR+ E+ A +D+N GCPA V K AGS+LL+ P+ V + ++ + Sbjct: 106 SLMGSNPDLLEHCARVLARETRAPRVDLNCGCPANVVTGKGAGSSLLRDPNDVYACVSAI 165 Query: 129 VNAVD----VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + VP TLK+R+G+ + E + A++ G +T+H RTR ++G A + Sbjct: 166 RRGCEGTGCVP-TLKLRSGYDDDSLLRENLLA-AQEGGAAFVTLHPRTRRQGYSGRANWK 223 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I + + +PVI NGD+T P +ARA+L TG +M+GR A P +FR I+ L G Sbjct: 224 DIAIAVETLDVPVIGNGDVTSPERARALLFETGCAGIMVGRGAVQDPLVFRRIKAELRAG 283 Query: 245 E 245 + Sbjct: 284 D 284 >UniRef50_B6A9H7 Dihydrouridine synthase family protein n=2 Tax=Eukaryota RepID=B6A9H7_9CRYT Length = 716 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 44/271 (16%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV--HIDEPGIR 67 N+LI AP+ + + PFR LC +GA +T SEM N ++ S L ++ H +E Sbjct: 331 NKLILAPLTTLGNLPFRRLCVRLGADITFSEMTLCN-EILAGKSSELALLRRHSEERCF- 388 Query: 68 TVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 +Q+AG + + +A IN +DIN+ CP K ++ + AGS L+ P +++SI+T Sbjct: 389 GIQLAGGNFETIAKTGEFINEYCDYDFLDINVACPLKSLHDRGAGSILIDRPKLLESIIT 448 Query: 127 EVVNAVDVPVTLKIRT---------------------GWAPEHRN--CEEIAQLAEDCGI 163 + +D P+T+K+R W + N ++ + + I Sbjct: 449 GLKKVIDKPLTIKLRMANSASPPNLKFYENTYINNPLNWDIIYSNMAAHKLIKPLVNYNI 508 Query: 164 QALTIHGRTRACLFNGEAEYDSIRAV---------------KQKVSIP-VIANGDITDPL 207 + IHGRT + +N A+++ +R K P +I GD+ + Sbjct: 509 NGIIIHGRTSSQRYNKSADWNYLRYCSKILKNEYLTYKDTNKNITYCPSLIGCGDVLNYC 568 Query: 208 KARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 L+ +A+MIGR A +PWIF EI+ Sbjct: 569 DYYKHLNEDDVNAVMIGRGALLKPWIFTEIK 599 >UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47C15_DECAR Length = 319 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 117/238 (49%), Gaps = 10/238 (4%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMS-SNPQVWESDKSRLRMVHIDEPGIR 67 +R++ APM G+ D R + ++G + E + SN + R+ ++ R Sbjct: 2 SRILLAPMEGLADDLLRGVLTDIGGYDWGICEFVRVSNSVLPAKTYERICPELLNGSKTR 61 Query: 68 T-----VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 T VQ+ GSDP MA+ AR V +D+N GCPA V R GSALL P+++ Sbjct: 62 TGTPMRVQLLGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPELLN 121 Query: 123 SILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I + V + V +P T K+R G R + AQ E GI L +HGRTR+ + Sbjct: 122 EITSAVRSVVPAHIPFTAKMRLGIDDTSRAI-DCAQALEAAGINELIVHGRTRSDGYRPP 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A ++ I V+ + IP+IANG++ R TG +M+GR A P + R ++ Sbjct: 181 ARWEWIDKVRDAIHIPLIANGEVWTVEDFRNCQLATGCADIMVGRGAVADPLLARRVR 238 >UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular organisms RepID=D0J1P6_COMTE Length = 347 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 124/246 (50%), Gaps = 12/246 (4%) Query: 11 RLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 RL+ APM G+ D R + +G A VSE + + + DK LR + G RT+ Sbjct: 2 RLLLAPMEGLLDFVLRDVLTRVGGADRCVSEFIRISGSLL-PDKVYLRTMPELRNGSRTL 60 Query: 70 -------QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 Q+ GSDP MA+ A G + ID+N GCPAK VNR G++LLQ P+ + Sbjct: 61 AGVPVRAQLLGSDPVSMAENAANLARLGPEGIDLNFGCPAKVVNRHGGGASLLQDPEQIV 120 Query: 123 SILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ V AV +PV+ K+R G+ + E AQ E G + +H RT+ + Sbjct: 121 RVVDAVRRAVPAQMPVSAKMRLGFN-DRALMTECAQAMEQGGACEIVVHARTKLDGYRPP 179 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A ++ I +++ V + V+ANG+I +A + +G D LM+GR P + ++ Sbjct: 180 AYWEEIPRIREAVGVNVVANGEIWTVEEALRCREVSGCDDLMLGRGIVADPGLALAVRRA 239 Query: 241 LDTGEL 246 ++ G + Sbjct: 240 VEHGSV 245 >UniRef50_B7XJM7 tRNA-dihydrouridine synthase 1 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJM7_ENTBH Length = 309 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 11/228 (4%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLR----MVHIDEPGIRTVQIA 72 M ++ FR L + +EM+ N +V+ +K+ R D +QI Sbjct: 1 MVSFSEEAFRILVRRYAVDVCYTEMV--NCKVFNQNKADPRKNRWYTTNDNDRPLVIQIC 58 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G+DP EM A + ++ IDIN+GCP + GS L+ + VK+I++ + + Sbjct: 59 GNDPSEML-ATCLQIQQYCDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNIISTLAEQL 117 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR--ACLFNGEAEYDSIRAVK 190 VP+ KIR + E A++ E G L +HGRTR G +D IRAVK Sbjct: 118 TVPIFCKIRVFESIEKT--ITYAKMIEKSGCSLLAVHGRTREQKGQNTGYVSFDHIRAVK 175 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +SIPV++NG + + ++ TG D +MIG P IF +I+ Sbjct: 176 NALSIPVVSNGGVLTHRDIKNAVEITGCDGIMIGEPILFIPSIFVDIE 223 >UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Chordata RepID=DUS3L_MOUSE Length = 637 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 5/234 (2%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66 + +L AP+ + PFR +C GA +T EM + +N + + L H E I Sbjct: 290 ISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHPCE-DI 348 Query: 67 RTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ G+ P M A + N +DIN+GCP V +K G AL+ + I+ Sbjct: 349 FGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIV 408 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 V +DVP+T+K+RTG + D G+ +T+HGR+R + A++ Sbjct: 409 RGVNGVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRLADWPY 468 Query: 186 IRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 I + S +P+ NGDI A + TG +M+ R A +PW+F EI+ Sbjct: 469 IEQCAKVASPMPLFGNGDILSFEDANCAMQ-TGVAGIMVARGALLKPWLFTEIK 521 >UniRef50_Q5CRK5 Ylr401cp-like protein with 2 CCCH domains plus Dus1p tRNA dihydrouridine synthase Tim barrel n=2 Tax=Cryptosporidium RepID=Q5CRK5_CRYPV Length = 707 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 126/277 (45%), Gaps = 47/277 (16%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID-EPGI 66 RN+LI AP+ + + PFR LC + GA +TVSEM+ N ++ S L ++ E Sbjct: 314 FRNKLILAPLTTVGNLPFRRLCLKFGADVTVSEMVLCN-EILSGKASELALLKKSPEEKY 372 Query: 67 RTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI- 124 +Q+AG + + IN IDIN CP K ++ K AGS L+ ++++ Sbjct: 373 FGIQLAGGNKSTIIKTGEFINEHCEFDFIDINAACPLKSLHDKGAGSILVDRVSELETMV 432 Query: 125 --LTEVVNAVDVPVTLKIRTGWAPEHRNCEE---------------------IAQLAEDC 161 L +V++ V V +++ G +P ++N E I + D Sbjct: 433 KGLKKVMDGKLVTVKVRMSHGGSPINKNLSEKDYFENFENWPVIYHNMKTHKILNILCDS 492 Query: 162 GIQALTIHGRTRACLFNGEAEY-------------------DSIRAVKQKVSIP-VIANG 201 GI ALTIHGRT + EA++ ++I+ + P +I G Sbjct: 493 GIDALTIHGRTSFQRYTKEADWSYIKYCSVLNSKLYSNKVVNNIQNSNHSLICPSIIGCG 552 Query: 202 DITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 DI + + + D++MIGR A +PWIF EI+ Sbjct: 553 DIINFQDYQQHIQNDLVDSVMIGRGALLKPWIFTEIK 589 >UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_DROME Length = 505 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 13/233 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESD----KSRLRMVHIDEPGI 66 R + APM ++ +R LC GA L S M +N ++ +D K L+ D P I Sbjct: 29 RYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHAN--LFATDPKYRKDALQTCPEDRPLI 86 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 +Q G+D +++ DAA + + +DIN+GCP R GS L +++ I++ Sbjct: 87 --IQFCGNDAQQILDAALL-AQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVS 143 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR--ACLFNGEAEYD 184 + + VPVT KIR E A++ E G Q LT+HGRTR G A ++ Sbjct: 144 TLHAKLAVPVTCKIRIFEDLE--KTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWN 201 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 I+ V+Q + IP++ANG+I L TG D +M P IF+ + Sbjct: 202 YIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGV 254 >UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezia globosa CBS 7966 RepID=DUS3_MALGO Length = 766 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 28/262 (10%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM--MSSNPQVWESDKSRLRMVHIDEP 64 Q + L AP+ + PFR LC G+ + EM S Q S+ S +R + Sbjct: 392 QWKGDLYLAPLTTTGNLPFRRLCASFGSDIHCGEMGMAESFLQGHASEWSLVRRWEGER- 450 Query: 65 GIRTVQIAGSDPKEMADAARI---NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 I Q+ G+ P+ + A + V G +D+N GCP V K AGSALL + + + Sbjct: 451 -IFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDHANKL 509 Query: 122 KSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I+ + A+ ++P+T+K+RTG + + A+ + G+ L++HGR+R + + Sbjct: 510 GRIVRGMSEALGEIPLTIKLRTGTTSKPTTHKIFARAQTEWGVGGLSLHGRSRKQRYKND 569 Query: 181 AEY-----------DSIRAVKQK---------VSIPVIANGDITDPLKARAVLDYTGADA 220 A++ D++R ++ V +PV NGD+ L++ D Sbjct: 570 ADWAYIRTCVDTLHDAVRTWNEEPQHADEPDMVPVPVYGNGDVYGWRDYYDHLEHAHVDG 629 Query: 221 LMIGRAAQGRPWIFREIQHYLD 242 MI R A +PWIF EI+ D Sbjct: 630 TMIARGALIKPWIFTEIKERRD 651 >UniRef50_A4AAB0 tRNA-dihydrouridine synthase C n=6 Tax=Gammaproteobacteria RepID=A4AAB0_9GAMM Length = 328 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 10/237 (4%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSN-----PQVWESDKSRLRMVHIDEP 64 R++ APM G+ D R L ++G V+E + + P+V+ L Sbjct: 8 RILLAPMEGVIDHTMRDLLTQLGGVDRCVTEFVRVSQELLPPRVFHRLCPELANGGCTSS 67 Query: 65 GIRT-VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 G+ +QI G DP +A+ A E GA +D+N GCPAK VNR GS +L+ P+ V Sbjct: 68 GVPVYLQILGGDPSVVAENASRAAELGAPGVDLNFGCPAKTVNRSDGGSIILREPERVHR 127 Query: 124 ILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ A+ VP+++KIR G+ R + ++ + + L IH RTRA + A Sbjct: 128 IVAATRQALPPSVPLSVKIRLGFDSSDRFLDIVSGI-DAARPSELVIHARTRADGYRPPA 186 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ I + K +P+IANG+I A+ + +G LM+GR RP + R ++ Sbjct: 187 YWEHIALARSKTRLPLIANGEIWGVGDAKLAREKSGTRDLMLGRGVLCRPDLPRLLR 243 >UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G230_PHATR Length = 545 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 14/243 (5%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66 ++ AP+ + + PFR + + GA +T EM +++N +S + L H +E I Sbjct: 185 FSKKVYVAPLTTVGNLPFRRIMKKFGADITCGEMAVATNLLSGQSSEWALLKRHPEE-DI 243 Query: 67 RTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQIA P A I E +D+N+GCP V K +G+AL+ ++S + Sbjct: 244 FGVQIAAGYPDVFARTCELIENEMNVDFVDLNLGCPLDIVCNKGSGAALMMRDKRLRSSV 303 Query: 126 TEVVNAVDVPVTLKIRTGWAPE----HRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 ++ + P+++K+RTGW H ++I D GI A+ IHGR+R + EA Sbjct: 304 EGILETLTCPISIKMRTGWEMTKPFAHNLVQKIQSWGLD-GISAVMIHGRSRLQRYAKEA 362 Query: 182 EYDSIRAVKQK-----VSIPVIANGDITDPLKARAVLDYTGADAL-MIGRAAQGRPWIFR 235 ++D I V + +IPVI NGDI + G ++ M+ R A +PW+ Sbjct: 363 DWDYISMVAKSQDMSLTTIPVIGNGDIFSYQDFEEKIAREGVNSCAMLARGALIKPWLPT 422 Query: 236 EIQ 238 EI+ Sbjct: 423 EIK 425 >UniRef50_A1AT39 Dihydrouridine synthase, DuS n=7 Tax=Desulfuromonadales RepID=A1AT39_PELPD Length = 342 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 11/240 (4%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYE-MGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 Q + L+ APM G+T+ R+L + + + +E M NP + + RL + E G Sbjct: 31 QGQTPLMLAPMQGVTNSALRSLFIDWVRPDVVFTEFMRVNP---AAAQRRLSAADLAEAG 87 Query: 66 IR------TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 VQ+ G + + ++ ++GA I++NMGCP ++ G +L+ P Sbjct: 88 SAGDDVPLVVQLIGHGREALVSGSQAAQDAGAAHINLNMGCPYGRMTSGQTGGGMLRSPQ 147 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + SI+ + + ++K+R+G+ R ++ L E G+ L +H RT + G Sbjct: 148 ELSSIIPALRKTIRGTFSIKLRSGYD-NPRQIFDLLPLFEASGVDFLVLHPRTVLQKYAG 206 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ Q+ ++P+IANGDI R VL TGA LM+GR A P +F+ +++ Sbjct: 207 FADHGITAEAVQRSTLPIIANGDIRSVATGRHVLRETGAAGLMLGRGAISDPLLFQRLRN 266 >UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota RepID=Q7PVV7_ANOGA Length = 599 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 30/250 (12%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNP------QVWESDKSRLRMVHI 61 R++L +P+ + + PFR +C E G +T EM + P Q W L H Sbjct: 248 FRDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACAIPIINGAIQEWA-----LTKRHS 302 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E + VQ+ G +PK + AA+I E ID+N GCP + + GSALL+ +V Sbjct: 303 SE-DLFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALLRRQNV 361 Query: 121 VKSIL---TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 +K ++ + ++ T+K R G E+ ED G +TIHGRT+ + Sbjct: 362 LKVMVQSCSRLLADYGKEFTVKTRIGIYNNKLIAHEMVPKFEDWGASLITIHGRTKEQRY 421 Query: 178 NGEAEYDSI-RAVKQKVSIPVIANGDITDPLKARAVLDYT-------GADALMIGRAAQG 229 A+++ + + Q S+PV NGDI DY +M+GR A Sbjct: 422 TKRADWEYLQQCATQAQSVPVFGNGDIF------GYEDYEHIRTKCPNIAGVMVGRGALI 475 Query: 230 RPWIFREIQH 239 +PW+F+EI+ Sbjct: 476 KPWVFQEIKE 485 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 446 e-124 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 422 e-117 UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteoba... 418 e-115 UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 413 e-114 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 397 e-109 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 390 e-107 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 388 e-106 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 384 e-105 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 383 e-105 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 382 e-105 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 380 e-104 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 376 e-103 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 375 e-102 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 373 e-102 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 372 e-102 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 371 e-101 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 371 e-101 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 370 e-101 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 369 e-101 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 369 e-101 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 368 e-100 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 368 e-100 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 367 e-100 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 366 e-100 UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonella... 364 2e-99 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 361 2e-98 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 361 2e-98 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 359 8e-98 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 359 1e-97 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 357 4e-97 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 356 5e-97 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 353 5e-96 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 351 2e-95 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 349 7e-95 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 349 8e-95 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 349 1e-94 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 348 1e-94 UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes Re... 348 1e-94 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 348 2e-94 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 347 3e-94 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 342 9e-93 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 342 1e-92 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 340 3e-92 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 339 1e-91 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 338 1e-91 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 338 2e-91 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 337 3e-91 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 337 3e-91 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 337 3e-91 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 336 5e-91 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 335 1e-90 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 334 2e-90 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 334 2e-90 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 334 3e-90 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 334 3e-90 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 334 3e-90 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 334 4e-90 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 333 5e-90 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 332 8e-90 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 330 5e-89 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 328 2e-88 UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostri... 327 3e-88 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 327 4e-88 UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepI... 325 2e-87 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 324 3e-87 UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bactero... 324 4e-87 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 323 4e-87 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 323 5e-87 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 323 5e-87 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 322 8e-87 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 322 1e-86 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 321 2e-86 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 321 2e-86 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 320 4e-86 UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibac... 320 5e-86 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 320 5e-86 UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia ... 320 6e-86 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 320 6e-86 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 319 1e-85 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 319 1e-85 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 318 2e-85 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 318 2e-85 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 317 3e-85 UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylob... 317 3e-85 UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinob... 315 1e-84 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 315 1e-84 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 314 3e-84 UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacte... 314 3e-84 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 314 3e-84 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 311 3e-83 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 311 3e-83 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 310 3e-83 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 310 6e-83 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 309 6e-83 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 309 7e-83 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 308 1e-82 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 307 5e-82 UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacter... 307 5e-82 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 306 9e-82 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 304 2e-81 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 304 2e-81 UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protei... 304 3e-81 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 303 7e-81 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 302 8e-81 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 302 1e-80 UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Plancto... 300 3e-80 UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propioni... 299 6e-80 UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=R... 299 7e-80 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 299 8e-80 UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collins... 298 2e-79 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 297 3e-79 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 297 3e-79 UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinom... 297 4e-79 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 295 9e-79 UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacte... 295 1e-78 UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobi... 294 2e-78 UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=A... 293 5e-78 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 293 6e-78 UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 293 6e-78 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 292 1e-77 UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinom... 291 3e-77 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 290 3e-77 UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis... 290 4e-77 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 288 1e-76 UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=... 287 3e-76 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 287 3e-76 UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xeno... 287 5e-76 UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like... 285 1e-75 UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteo... 285 1e-75 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 284 2e-75 UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 284 2e-75 UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dict... 284 3e-75 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 284 3e-75 UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=E... 283 4e-75 UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobi... 283 4e-75 UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga ol... 283 4e-75 UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 282 9e-75 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 282 1e-74 UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylo... 282 1e-74 UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=At... 282 1e-74 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 282 1e-74 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 282 1e-74 UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conex... 282 2e-74 UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovib... 280 4e-74 UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa... 280 5e-74 UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=... 280 6e-74 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 277 3e-73 UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=D... 277 4e-73 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 277 5e-73 UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Euka... 276 9e-73 UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine... 275 1e-72 UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coe... 275 2e-72 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 275 2e-72 UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=A... 274 3e-72 UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 273 5e-72 UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Tr... 273 7e-72 UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus... 272 1e-71 UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogace... 272 2e-71 UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tet... 271 2e-71 UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycet... 271 2e-71 UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Cho... 270 4e-71 UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 270 5e-71 UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 270 6e-71 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 270 6e-71 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 269 8e-71 UniRef50_B0SXE6 TIM-barrel protein, nifR3 family n=2 Tax=Cauloba... 269 1e-70 UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agarica... 268 1e-70 UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricale... 267 3e-70 UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicob... 267 4e-70 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 266 6e-70 UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Eut... 266 9e-70 UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_D... 265 1e-69 UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera Rep... 265 2e-69 UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candida... 265 2e-69 UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasid... 264 2e-69 UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=S... 264 2e-69 UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME 264 3e-69 UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamie... 264 3e-69 UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota R... 263 4e-69 UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=... 263 5e-69 UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 ... 263 6e-69 UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella t... 262 8e-69 UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Met... 262 9e-69 UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga l... 262 1e-68 UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota ... 262 2e-68 UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 262 2e-68 UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 ... 260 4e-68 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 260 6e-68 UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91... 258 2e-67 UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=D... 258 2e-67 UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax... 258 2e-67 UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella R... 257 4e-67 UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synt... 256 7e-67 UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermot... 256 9e-67 UniRef50_A8J121 Predicted protein n=1 Tax=Chlamydomonas reinhard... 255 1e-66 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 255 1e-66 UniRef50_B9CKJ9 tRNA-dihydrouridine synthase B n=1 Tax=Atopobium... 255 2e-66 UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesi... 255 2e-66 UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genom... 255 2e-66 UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=P... 255 2e-66 UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultu... 254 4e-66 UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 254 4e-66 UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypano... 253 4e-66 UniRef50_D1N0Y1 Dihydrouridine synthase DuS n=1 Tax=Victivallis ... 253 4e-66 UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Mag... 253 6e-66 UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine... 253 7e-66 UniRef50_B6JXB4 tRNA-dihydrouridine synthase n=1 Tax=Schizosacch... 252 9e-66 UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota... 252 1e-65 UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezi... 251 3e-65 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 250 4e-65 UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 250 4e-65 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 249 8e-65 UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseria... 249 1e-64 UniRef50_C2KNM7 Possible tRNA-dihydrouridine synthase n=4 Tax=Mo... 248 1e-64 UniRef50_C7NBC4 Dihydrouridine synthase DuS n=3 Tax=Leptotrichia... 248 1e-64 UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii Re... 248 1e-64 UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomyco... 248 2e-64 UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi R... 248 2e-64 UniRef50_UPI000186DA49 tRNA-dihydrouridine synthase, putative n=... 247 3e-64 UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=L... 247 4e-64 UniRef50_UPI00015B403F PREDICTED: similar to MGC79829 protein n=... 247 5e-64 UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilag... 245 1e-63 UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosac... 243 4e-63 UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas s... 243 7e-63 UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicro... 243 8e-63 UniRef50_Q7QCT0 AGAP002791-PA (Fragment) n=3 Tax=Culicidae RepID... 242 9e-63 UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteo... 242 1e-62 UniRef50_Q6C4K2 YALI0E26059p n=1 Tax=Yarrowia lipolytica RepID=Q... 242 1e-62 UniRef50_Q6MNE9 Nitrogen regulation protein nifR3 n=1 Tax=Bdello... 240 7e-62 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 239 9e-62 UniRef50_O74553 tRNA-dihydrouridine synthase 4 n=1 Tax=Schizosac... 239 9e-62 UniRef50_C1DY86 Dihydrouridine synthase-like family protein n=1 ... 238 2e-61 UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepI... 238 2e-61 UniRef50_Q9XVN8 Protein F36A2.2, partially confirmed by transcri... 238 2e-61 UniRef50_Q5CRK5 Ylr401cp-like protein with 2 CCCH domains plus D... 238 2e-61 UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharopha... 237 3e-61 UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammapr... 237 4e-61 UniRef50_C8QWB5 Dihydrouridine synthase DuS n=1 Tax=Desulfurivib... 236 6e-61 UniRef50_C5LCP2 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 236 6e-61 UniRef50_Q9NX74 tRNA-dihydrouridine synthase 2-like n=35 Tax=Met... 236 6e-61 UniRef50_D2VPP8 Predicted protein n=1 Tax=Naegleria gruberi RepI... 236 6e-61 UniRef50_C1TL75 tRNA-dihydrouridine synthase n=2 Tax=Synergistac... 236 7e-61 UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii Rep... 236 9e-61 UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales ... 236 9e-61 UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 235 2e-60 UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalob... 235 2e-60 UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammapro... 234 4e-60 UniRef50_D2MLS1 TIM-barrel protein, nifR3 family n=1 Tax=Bulleid... 233 4e-60 UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobas... 233 5e-60 UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas ... 233 5e-60 Sequences not found previously or not previously below threshold: >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 446 bits (1148), Expect = e-124, Method: Composition-based stats. Identities = 265/320 (82%), Positives = 295/320 (92%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IGQYQ++N L+AAPMAGITDRPFR+LCY MGAG+TVSEM+SSNPQVW++DKSRLRM+H Sbjct: 30 MYIGQYQIKNCLVAAPMAGITDRPFRSLCYSMGAGMTVSEMLSSNPQVWKTDKSRLRMIH 89 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 DE GIR+VQIAGSDP EMA AARINV +GAQIIDINMGCPAKKVNRKLAGSALL+YP++ Sbjct: 90 SDELGIRSVQIAGSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPEL 149 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ IL VVNAVDVPVTLK+RTGW+PE RNC +IAQLAE CGIQA+TIHGRTRACLFNG Sbjct: 150 IEKILLAVVNAVDVPVTLKVRTGWSPEERNCIKIAQLAERCGIQAVTIHGRTRACLFNGA 209 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYDSIRA KQ V+IP+IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY Sbjct: 210 AEYDSIRAAKQNVTIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 269 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGELLPP+P+AEV+ L+ AHV+ELHDFYG KG RIARKHVSWYL+EHAP+DQFRRTF Sbjct: 270 LETGELLPPMPIAEVQCLMQAHVKELHDFYGQGKGIRIARKHVSWYLREHAPDDQFRRTF 329 Query: 301 NAIEDASEQLEALEAYFENF 320 N IEDASEQLE LEAYFE F Sbjct: 330 NTIEDASEQLEVLEAYFEKF 349 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 422 bits (1085), Expect = e-117, Method: Composition-based stats. Identities = 208/317 (65%), Positives = 252/317 (79%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG YQLRNR++ APMAGITD+PFR LC GAGLT SEMMS+NPQVW ++KS+LR+ H Sbjct: 1 MRIGSYQLRNRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAH 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ G+ VQIAGSDP EMA AA INVE GAQIIDINMGCPAKKVNRKLAGSALLQ+PD+ Sbjct: 61 SEDLGLNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ IL EVV+AV+VPVTLKIRTGW +RNC +I ++AE CGIQALT+HGRTRACLF GE Sbjct: 121 VEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEGE 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I+AVKQ ++IPVIANGDI KA+ VL+YTGADA+MIGRAA G PW+F+ +++ Sbjct: 181 AEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLFQAVENL 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 ++ + L E + H++ELH FYG KGYRIARKHV+WYLQ P+ F++TF Sbjct: 241 IEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIARKHVAWYLQGIQPDSVFKQTF 300 Query: 301 NAIEDASEQLEALEAYF 317 NAI D EQL LE +F Sbjct: 301 NAISDPKEQLIVLEDFF 317 >UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteobacteria RepID=DUSB_VIBCH Length = 322 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 226/321 (70%), Positives = 264/321 (82%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG YQL+N LI APMAG+TDRPFR LC GAG+ VSEMMS NP +W++ KS+ RMVH Sbjct: 1 MKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E GIR+VQIAGSDP+ MA+AA+ +VE+GAQIIDINMGCPAKKVN+KLAGSALL+YPDV Sbjct: 61 EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDV 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ IL VVNAV+VPVTLK RTGW +++NC IAQLAEDCGIQAL +HGRTRAC++ GE Sbjct: 121 IEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGE 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYDSI+AVK VSIPVIANGDI P KAR VL+YTGADALMIGR AQGRPWIF+EIQH+ Sbjct: 181 AEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHF 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+ G +P LP++EVK ++ HV LH FYG G RIARKHVSWYLQEH FRRTF Sbjct: 241 LEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTF 300 Query: 301 NAIEDASEQLEALEAYFENFA 321 NAIE A +QL+ALE YF+N A Sbjct: 301 NAIETADQQLDALEGYFDNVA 321 >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 137/319 (42%), Positives = 194/319 (60%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG +L+N++ +PMAG+TD PFR +C E G GL +EM++ ++ + ++ + Sbjct: 1 MKIGNLELKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKI 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +E VQI GS+P+ M AA I + +I+DINMGCPA KV + GSAL++ P + Sbjct: 61 EEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + +L VV PVTLKIR GW N EIA++AEDCGI AL IHGRTR + G+ Sbjct: 121 AEEVLRAVVKNSKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYTGK 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I +K+ +SIPVI NGD+ + +LD TG DA+MIGR AQG PWIF+ I HY Sbjct: 181 ADWDIIAEIKKNLSIPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQGNPWIFKRINHY 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 ++TGE+LP L E H++ + +G R RKH++WYL+ + + R Sbjct: 241 MNTGEILPEPTLNEKISTAIKHLKLAVEEHGEYVAVREMRKHIAWYLKGLRNSAKLRDEI 300 Query: 301 NAIEDASEQLEALEAYFEN 319 N IED E + LE Y E+ Sbjct: 301 NKIEDYQEVVSKLEYYMED 319 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 123/303 (40%), Positives = 176/303 (58%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG L N LI PMAG+TD PFR LC E GAGL EM+S+ ++++ + + Sbjct: 9 LQIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYKNKNTESLLSI 68 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + ++Q+ GSDP+ MA A+ E I+DINMGCP K+ GSAL++ P + Sbjct: 69 DEREKPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPLL 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I+ +V A+D PVT+KIR G+ EH N E+A +AE+ G A+ +HGRTR ++G+ Sbjct: 129 AGQIIESIVKAIDKPVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYYSGK 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D IR VK+ VSIPVI NGD+ + + TG D MI R AQG PWIF +I HY Sbjct: 189 ADWDIIRQVKEAVSIPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQGNPWIFSQILHY 248 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +TGE EV+R++ H R + +F G G RKH +WY + + + R Sbjct: 249 FETGEHQEKPSFEEVRRMILRHARMMIEFKGEYTGIHEMRKHTAWYTAGYPHSSRLRAAV 308 Query: 301 NAI 303 N + Sbjct: 309 NTV 311 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 133/316 (42%), Positives = 193/316 (61%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG ++NR+I+APMAGITDR +R L E G GL +EM+S ++ + K+ + + Sbjct: 2 LRIGNVTIKNRVISAPMAGITDRAYRILAKEAGCGLVCTEMISDQALLYGNPKTNILLDC 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E ++QI GS P+ MA AA I GA IIDINMGCP K+ + G+AL++ P++ Sbjct: 62 TGETPPISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKPEL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I+++VV +V VPVT+KIR GW N E+A LAE+ G +A+T+HGRTR+ ++G+ Sbjct: 122 AQKIISDVVQSVRVPVTVKIRKGWDESFPNAVEMALLAEEAGAKAVTVHGRTRSQFYSGK 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I++VK+ V+IPVI NGDI +P A +L +TG DA+MIGRA+ G PWIF H+ Sbjct: 182 ADWDIIKSVKKAVTIPVIGNGDIREPRDAVRMLMHTGCDAVMIGRASLGNPWIFSSTVHF 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 LD GE LP + + H+ L + G R RKH +WY + ++ R Sbjct: 242 LDCGENLPAPSPRQRLSVALRHLELLIELKGEYIAIREMRKHAAWYTRGLREANRIREKI 301 Query: 301 NAIEDASEQLEALEAY 316 N SE E L + Sbjct: 302 NRAVSLSEIRELLNYF 317 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 199/317 (62%), Positives = 235/317 (74%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIGQY LRN LI APMAG+TD+PFRTLC +GAG+ VSEM+SS+ +W S KS LR +H Sbjct: 4 VRIGQYTLRNNLILAPMAGVTDQPFRTLCQRLGAGMVVSEMVSSDMSLWNSRKSSLRRIH 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +P R+VQIAG D + MA AA+ NVE+GAQIIDINMGCPAKKV K AGSALL+ + Sbjct: 64 EGDPEPRSVQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEAL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV+AVDVPVTLKIRTGW ++N +A++AE GIQAL +HGRTRA L+ GE Sbjct: 124 VSEILHAVVSAVDVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTRADLYTGE 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I A+KQ VSIPV ANGDIT P KARAVL+ TG D L+IGRAAQGRPWIFREI+HY Sbjct: 184 AEYDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFREIEHY 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L TGE LP L EV+R+L H+ LH FYG G RIARKHV WYL +FR F Sbjct: 244 LRTGEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGKEFRARF 303 Query: 301 NAIEDASEQLEALEAYF 317 NA+ED Q + A+F Sbjct: 304 NALEDTQAQCANVRAFF 320 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 181/310 (58%), Gaps = 1/310 (0%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ APMAG+TD PFR +C E GA TVSEM+S+ ++++ K+ + + +Q Sbjct: 10 PVVLAPMAGVTDLPFRVICRENGADYTVSEMVSAKALLYKNQKTFAMLTIDPKEHPTAIQ 69 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + GS P E+A A +I GA +ID+NMGCP K+ GSAL++ PD V +IL +V+ Sbjct: 70 LFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAILAALVD 129 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 AV +PVT+K R GW H+N IAQ+AE G+ A+ +HGRTRA + G+A++D IRAVK Sbjct: 130 AVSIPVTVKFRAGWDEAHKNAAVIAQMAEKAGVSAVCVHGRTRAQFYQGKADWDIIRAVK 189 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 + V IPV+ NGDI A + + TG D +MI R A+G PWIFR+++ L G+ + P+ Sbjct: 190 ESVGIPVLGNGDIFHAEDALRMKEETGCDGVMIARGAEGNPWIFRDVKALL-HGKAISPV 248 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQL 310 + E ++ H+ +L F G G R R H + YL + +R T N + L Sbjct: 249 SVQERFAMIRRHLHDLILFKGERVGVREMRHHGAMYLTGLPHSAYYRNTINQAQTEEALL 308 Query: 311 EALEAYFENF 320 L Y E Sbjct: 309 AVLGEYEEKL 318 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 120/316 (37%), Positives = 173/316 (54%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IGQ ++ +I APM +TD FR LC GA + +E +SS+ + + KS+ ++ Sbjct: 45 MKIGQIEIEKPVILAPMEDVTDPSFRRLCKHYGADIVFTEFISSDGLIRHAVKSKRKLDV 104 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 D+ +QI G+ + M +AA++ +G IDIN GCPAKKV K AGS LL PD+ Sbjct: 105 FDDERPVAIQIFGNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDL 164 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ I VV AV +PVT K R GW + + + E CGIQAL+IHGRTRA ++ G Sbjct: 165 MEKITDAVVKAVRLPVTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGR 224 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I K+ +IP+I NGDI A+ + D TG D +MIGR A G P++FRE +H Sbjct: 225 ADWSWIARAKEVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPFLFREAKHL 284 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 + TGE LP E + H+ + G G R+H S YL+ + R Sbjct: 285 IQTGEHLPQATHRERVAVAIRHLEMSLERKGEKYGVLEMRRHYSTYLKGLPNVSKVRDYL 344 Query: 301 NAIEDASEQLEALEAY 316 D + +EAL + Sbjct: 345 VRENDPNLIVEALRRF 360 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 178/320 (55%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 IG + L+ PMAG+TD PFR LC E GA L +EM+S+ + + + + + Sbjct: 3 FTIGNVNINGNLVLGPMAGVTDLPFRLLCKEQGADLIYTEMVSAKGIYYNNKNTEVLLEV 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ +Q+ G DP M++ A+ +DINMGCP KV GSAL+ P+ Sbjct: 63 EEKERPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPER 122 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I++ + A+ PVT+KIR G+ ++ N E+A++ E G A+ +HGRTR ++GE Sbjct: 123 IGEIVSAISKAIKKPVTVKIRKGFTKDNINAVEVAKVIEQSGGAAIAVHGRTREQYYSGE 182 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I+AVK+ VSIPVI NGD+ P + ++ YTG DA+MI R +G PW F + +HY Sbjct: 183 ADWDIIKAVKEAVSIPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRGNPWFFSQAKHY 242 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGE+L + EV ++ H R + G RKHV+WY + + + R Sbjct: 243 LNTGEILAKPSVPEVIEMILRHGRLAIEVKGEFTAMHEMRKHVAWYTMGYPKSAKLRNQV 302 Query: 301 NAIEDASEQLEALEAYFENF 320 N IE + + ++ Y E Sbjct: 303 NEIETYEDLIVLMKKYEEML 322 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 173/299 (57%), Gaps = 1/299 (0%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 + APMAG+TD PFR +C E+GA TVSEM+S+ ++++ K+ + +Q Sbjct: 18 PIALAPMAGVTDLPFRVICRELGADYTVSEMVSAKALLFKNPKTFAMLEVDPREHPVAIQ 77 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + GS P+E+ A+I E GA IID NMGCP K+ GSAL++ P+ + L +V+ Sbjct: 78 LFGSVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYACLAALVD 137 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 AVD PVT+K R GW +HRN EIA+LAE G+ A+ +HGRTR ++G+A++D IR VK Sbjct: 138 AVDRPVTVKFRAGWDEDHRNAVEIARLAEKAGVAAVAVHGRTRGQFYSGKADWDIIRQVK 197 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 + VSIPV+ NGD+ A +L T D +MI R AQG PWIFRE+Q L G+ +PP+ Sbjct: 198 EAVSIPVLGNGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIFREVQAVLA-GKTIPPV 256 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 L E ++ H+R+L F G R R H + Y + +R N Sbjct: 257 TLEERFAMVRRHLRDLTAFKGEKVAIREMRHHGACYFTGLPHSAHYRNAINQCLTKEAF 315 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 129/322 (40%), Positives = 184/322 (57%), Gaps = 3/322 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++G Y + N+LI APMAG+++ PFR + ++GAG+ +EM+S +++ K+ + Sbjct: 3 FKLGNYVVENKLILAPMAGVSNHPFRLMARQLGAGVVFAEMVSDKAIFFQNPKTLQMLYM 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKV-NRKLAGSALLQYP 118 E QI GSD + M +AA I+ S IDINMGCP KV AG++L++ P Sbjct: 63 TVEEKPAAQQIFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLMKDP 122 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + I+ + V PVT+KIR+GW E N E+A++ E G +T+H RTRA ++ Sbjct: 123 QKIYDIVKAIKEKVSKPVTVKIRSGWDSESVNAVEVAKMIEKAGASLITVHARTRAQGYS 182 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 GE + D I+AVK+ VSIPVI NG+I D A+ +L+YTG DA+MIGRA+ G PWIFREI Sbjct: 183 GEPDLDVIKAVKEAVSIPVIGNGNIVDGKSAKHMLEYTGCDAVMIGRASLGNPWIFREIN 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL+ GE P EVK L+ H +L G R H WYL+ Q R Sbjct: 243 AYLN-GEETPVRTYEEVKTLMIRHFDDLAKLKGEHTACLEMRSHGPWYLKGLPKASQVRA 301 Query: 299 TFNAIEDASEQLEALEAYFENF 320 + +E +E LE YF++ Sbjct: 302 KLARTTNRAEYMENLEMYFDDV 323 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 122/320 (38%), Positives = 188/320 (58%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 +IG ++ + I APMAG++D +R L E GA L +EM+S+ ++++++ + Sbjct: 7 QIGAVKIDGQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRIE 66 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 D ++QI GS+P+ +A A++ +GA I+DINMGCP KKV GSAL++ PD+ Sbjct: 67 DVERPVSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPDLA 126 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + V AVDVPVT+K+R GW + N + A+ E G+ A+ +HGRT+ +++G A Sbjct: 127 ARVAEAAVEAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSGHA 186 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ I+AVK+ VS+PV+ NGDI +P A+ +LD TG DA+M+GR AQG PWIF I HYL Sbjct: 187 DWSYIKAVKEAVSVPVLGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPWIFGRIHHYL 246 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 TGE+LP E +L H L + G + R H WY++ + +R N Sbjct: 247 ATGEVLPGPTDIERLDMLLKHFDLLCQYKGEGMAVKEIRTHAGWYMKGLPESAYWRNRVN 306 Query: 302 AIEDASEQLEALEAYFENFA 321 I+ + LE+Y + + Sbjct: 307 TIQTVTSFHNELESYRKILS 326 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 121/315 (38%), Positives = 175/315 (55%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG L+N++I AP+AG+TD FR L EMG L +EM+S+ V +++ Sbjct: 1 MQIGSLALQNKVILAPLAGVTDSSFRILAREMGCALVFTEMISAKGAVCAPEQTLKIARF 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + +Q+ GSDP+ A A + ++DINMGCP KKV K G AL++ PD Sbjct: 61 TAQERPIGIQLFGSDPEIFARATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRDPDK 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +I V +A +PVT+K+R GW N E+A ++ G A+T+HGRTRA ++G Sbjct: 121 AYAITKAVCDAATMPVTVKMRKGWDDSEVNAVEVALAVQEAGAAAVTVHGRTRAQGYSGR 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I VK+ + +PV+ NGDI +P A+ +L TG DA+M+ R G W+ R HY Sbjct: 181 ADWSVIARVKEALRVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVLGNLWLIRRTVHY 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGELLP +AE RL C H++ + D G G R RKH++WYL+ Q R Sbjct: 241 LETGELLPEPEMAERVRLACRHLKMVVDEKGEYMGVREMRKHMAWYLKGMRGAAQVRNEI 300 Query: 301 NAIEDASEQLEALEA 315 + E LE Sbjct: 301 MRAKTKEEMTAILEN 315 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 125/317 (39%), Positives = 174/317 (54%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG ++N +I APMAGI++ PFR + E G L +EM+S+N V +KS+ M Sbjct: 4 IGSLIIKNNVILAPMAGISNLPFRMMAREAGCALAFTEMISANGLVRGIEKSQQYMKSCI 63 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 + VQI G+DP MADA RI + GA +ID+NMGCP KKV + AG+ALL+ P +V Sbjct: 64 DDKPLGVQIFGNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVS 123 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 IL V A P+T+KIR+GW + N +IA++AE GI A+ +H RT F G A+ Sbjct: 124 QILESVRKATRKPLTVKIRSGWNLQSINAVQIARIAEQQGIDAVFVHARTAVQGFAGSAD 183 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 + I +K V I VI NGD+ A ++ TG D +MIGR A G PWIF E +Y Sbjct: 184 WRIIEEIKNSVGIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRGALGNPWIFNEALNYQS 243 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 T + L E K ++ H+ F G + + RKH+ WY + FR Sbjct: 244 TVQTHSEPVLNERKEMILRHLERETIFLGQKEAVKRFRKHLLWYTKGIRGGASFRSRVTT 303 Query: 303 IEDASEQLEALEAYFEN 319 I D + L +EA+F+ Sbjct: 304 ISDQNLLLREIEAFFDQ 320 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 171/321 (53%), Gaps = 2/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IG N + APMAG TD FR +C E+G GL +EM+S+ +ES+ ++ V Sbjct: 1 MNIGNLIFHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYESNNTKELCVI 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 ++ +Q+ G +P+ MA+A N I+D+NMGCPA K+ + GSAL++ P Sbjct: 61 SNKEKPVALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPK 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I+ + P+T+K R G+ + N E A++ E G+ A+TIHGRTR ++ G Sbjct: 121 LASEIIKAMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +A++ I VK VSIPVI NGD+ A +++ T D +MIGR AQG PWIF++I Sbjct: 181 KADWAIISKVKNSVSIPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQGNPWIFKQINE 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + GE + E + H ++ +++ K R RKHV+ Y++ + Sbjct: 241 KI-KGEHVYYPTPQERIDICINHYKKSLEYFEEHKAVREMRKHVAVYVKGLKNCTDIKDK 299 Query: 300 FNAIEDASEQLEALEAYFENF 320 N +D + LE L Y E Sbjct: 300 VNMEKDPDKVLEELIKYRETL 320 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 113/320 (35%), Positives = 183/320 (57%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M++G+ L N +I APMAG+TD P+R + + GL EM+S+ V+ + K+ ++H Sbjct: 4 MKLGKLTLDNCIIVAPMAGVTDYPYRRILAKFSPGLICGEMVSAKGMVYGNKKTEEMVIH 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ + QI GSDPK MADAA G ID+NMGCPA K+ + GSALL+ P + Sbjct: 64 HNQGVHYSQQIFGSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I+ E+VN+V++PVT+KIR G+ + + E+A ++ GI+AL +HGRT ++G+ Sbjct: 124 AQEIVREIVNSVNLPVTVKIRKGFDRKSSDPLELALRLQEVGIKALAVHGRTCEQQYSGK 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+++ + +K + IPVI NGDI A + L+ T D +M+GR G PW+ + + Sbjct: 184 ADWEVVAKLKNYLDIPVIGNGDIFSSEDAVSALEMTACDGIMLGRGLMGNPWLIEQTKGM 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L E + + E+K + +H +YG +KG RKH+SWYL+ + + Sbjct: 244 LIKDEKIESPEIHEIKNEMKSHFENAIKYYGESKGIAEMRKHISWYLKSLPGSTSIKDEV 303 Query: 301 NAIEDASEQLEALEAYFENF 320 + D ++ +L YF+ Sbjct: 304 MRLTDVNQIWFSLNEYFQAL 323 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 157/322 (48%), Positives = 213/322 (66%), Gaps = 2/322 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG YQL++++ APMAG +D+PFR +C GA LT SEM+ + ++KS+ R+ Sbjct: 3 IQIGAYQLKSQVFLAPMAGTSDKPFRAICRAQGAALTTSEMVVIQKHLLGTNKSKHRLDF 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 EP ++QIAGS E+A +A+ ++ GA IIDINMGCPAKKV K AGSAL+Q + Sbjct: 63 SGEPAPISIQIAGSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEAL 122 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 VKSIL VV+AVD+PVTLK+RTGW ++N IA++AE+ GIQ L++HGRTR + G Sbjct: 123 VKSILNAVVSAVDIPVTLKMRTGWNVSNKNAPTIAKIAEEAGIQMLSVHGRTREDKYTGM 182 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I+AVK +V IPVIANGDIT KA++VL YTGAD +M+GRA QG PWI EI HY Sbjct: 183 AEYDTIKAVKSQVGIPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNPWIIHEIDHY 242 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ--EHAPNDQFRR 298 L TG+ +PL K+ + H++++H FYG G +++RKH+ WY + F Sbjct: 243 LKTGQKATDIPLNVKKQTILDHIKQIHAFYGEKLGTQLSRKHIFWYATHLDEKNAQTFWE 302 Query: 299 TFNAIEDASEQLEALEAYFENF 320 N I D Q + LE Y Sbjct: 303 KVNKITDHKLQYQLLENYLHQL 324 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 128/321 (39%), Positives = 197/321 (61%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM-V 59 ++IG +L + +I APM+G+TD FR L GAGL VSEM++S + ES +S + + Sbjct: 2 IKIGNIELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMIASRAMIVESRQSLQKCSI 61 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D+ VQ+AG +P +A+AA++N + GA+IID+N GCPAKKV +GSAL++ Sbjct: 62 MQDDATSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEG 121 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I V AV +PVT+K+R GW + +N +A++AE GIQ +T+HGRTR ++G Sbjct: 122 LAAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQFYSG 181 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A+++ I+ VK+ V IPVIANGDIT+ KA+ L+ + AD +M+GR A G+PW+ +I H Sbjct: 182 NADWEFIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPWLISQIDH 241 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL TGE P + ++ H + + D+YG + G IARKH+ WY + +FR Sbjct: 242 YLKTGEEKPAPSIESQLDIVLEHYQAIVDYYGESAGVPIARKHMGWYSSGLPNSAEFRGA 301 Query: 300 FNAIEDASEQLEALEAYFENF 320 N + D + + ++ + Sbjct: 302 VNLMNDPIAVKDKIVEFYTSV 322 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 114/321 (35%), Positives = 175/321 (54%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG Q+ N ++ APMAG+ + FR E GAGL +EM+S ++ + K+ + Sbjct: 20 FKIGNVQINNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILFNNPKTMGMLYI 79 Query: 61 IDEPGIRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + ++QI G + + + AA+ + A IIDINMGCP K+ + AG+ L P+ Sbjct: 80 DEREKPLSLQIFGGEKETLVQAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDPN 139 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + ++ VV+AV+ PVT+K+R GW H E AQ E G QA+ +HGRTR ++ G Sbjct: 140 KIYDMVAAVVDAVEKPVTVKMRIGWDENHIYAVENAQAVERAGGQAVAVHGRTRVQMYEG 199 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +A+++ I+ VK+ V IPVI NGD+ P A+ +L+ TG D +MIGRAA G PW+ Sbjct: 200 KADWNVIKQVKEAVRIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGRAALGNPWMIYRTVR 259 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TGEL+P + E + H+ L + RKH +WYL+ N + R Sbjct: 260 YLETGELIPEPSVREKIEVCILHLDRLIALKNEYIAVKEMRKHAAWYLKGIRGNAKVRNA 319 Query: 300 FNAIEDASEQLEALEAYFENF 320 N + E + L ++ E Sbjct: 320 INECQTRDELVTLLMSFVEEV 340 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 158/309 (51%), Positives = 205/309 (66%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 + APMAGITDR +R +C E GA VSEM++S Q+ ES KS R E R VQ+ Sbjct: 12 IALAPMAGITDRVYRDICRESGASYAVSEMVASKKQLRESAKSSTRHADKTETSPRIVQL 71 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G+ P+E+ DAA GA IID+NMGCPAKKV AGSAL+ P+ V I + A Sbjct: 72 LGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADIFKSLTEA 131 Query: 132 VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 +D+PVT+KIRTG ++ N EIA+LA++ G++A+TIHGRTRA FNG+AEYD+I+AVKQ Sbjct: 132 IDLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTRADKFNGQAEYDTIKAVKQ 191 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 V IPVIANGDI P +A+ VL YTG+D +MIGRAAQG PWIFREI H+L TG+ LP Sbjct: 192 AVDIPVIANGDICSPKEAQFVLKYTGSDGIMIGRAAQGYPWIFREIAHFLKTGDCLPSPS 251 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 AE ++++ H EL YG G++IARKH+ WY Q + R+ FN +E+ QL Sbjct: 252 FAEFQQVMTRHFSELEILYGEHLGHKIARKHLGWYSQYLPNGTELRKRFNRLENTQAQLN 311 Query: 312 ALEAYFENF 320 + YF+ Sbjct: 312 LINHYFDTL 320 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 120/317 (37%), Positives = 180/317 (56%), Gaps = 1/317 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG QL+NR++ APMAG+ + FR E GAGL +EM+S ++ + ++ + Sbjct: 2 FKIGDIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYI 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + ++QI G + + +AA+ ++ + A IIDINMGCP K+ + AG+ L PD Sbjct: 62 DEREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPD 121 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + +++ VV+AV+ PVT+K+R GW +H + AQ E G +A+ +HGRTR ++ G Sbjct: 122 KIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEG 181 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A +D I+ VKQ VSIPVI NGD+ P A+ +LD TG D +MIGRAA G PW+ Sbjct: 182 TANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMIYRTVQ 241 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TG+L + E + H+ L D G R RKH +WYL+ N R Sbjct: 242 YLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKHAAWYLKGVKGNANVRNE 301 Query: 300 FNAIEDASEQLEALEAY 316 N E E ++ L+A+ Sbjct: 302 INHCETREEFVQLLDAF 318 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 182/324 (56%), Gaps = 6/324 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG +++ +L+ PMAG+++ PFR + E GA L +EM+S + K+ + Sbjct: 1 MKIGNVEIKGKLVQGPMAGVSNPPFRLISKEKGADLVCAEMVSVEGMTHNNKKTFSMLAV 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKV-NRKLAGSALLQYP 118 + ++QI G+D + A + E+ IID+N+GCPA KV R +GS+LL+ P Sbjct: 61 EKKEHPMSMQIFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTP 120 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +++ I+ VV PVT KIR GW E N E+++L E G +T+HGRTR+ ++ Sbjct: 121 ELIYDIVKAVVENTSKPVTAKIRLGWDKESVNAVEVSKLIEKAGASGITVHGRTRSEFYS 180 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A+++ I+ VK+ V+IPVI NGD+ D A+A+L+ TG D +MI R QG PWIFREI Sbjct: 181 GHADWEKIKEVKEAVNIPVIGNGDVIDGPSAKAMLELTGCDGVMISRGCQGNPWIFREIA 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFY-GPAKGYRIARKHVSWYLQEHAPND--- 294 H+L+TGE L AE K + H + L D+ R RKH++WY + Sbjct: 241 HFLETGEELDKPSFAEWKETVLKHAKMLIDYKQDEGSAIREFRKHLTWYFAALPKTEILN 300 Query: 295 QFRRTFNAIEDASEQLEALEAYFE 318 Q + N I S+ +E Y E Sbjct: 301 QLKEEANKINTFSDLENIIEKYKE 324 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 179/311 (57%), Gaps = 1/311 (0%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 ++ ++ APMAG TD+ FR LC GA +TV+EM+SS V S K++ + +E Sbjct: 2 LDIKGKIFLAPMAGFTDKVFRRLCSRFGADVTVTEMISSKALVLGSAKTKDLISFSEEEK 61 Query: 66 IRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 IR VQI G+DP+ MA + +I E IDINMGCP K+ R G AL++ P + I Sbjct: 62 IRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSLAAKI 121 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + EV PV++KIR G+ E+ N E A + ++ G +T+HGRTRA L++G+A+++ Sbjct: 122 VEEVAKVSRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSGKADWE 181 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 IR VK+K+ IPVIANGDI D A+ + T AD++MIGRAA G PW+F +I+ + G Sbjct: 182 IIRKVKEKLKIPVIANGDIVDFESAKKAYEVTRADSIMIGRAALGNPWVFLQIKEGFEKG 241 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + + R+ +L G ARKH+S++++ + R N I Sbjct: 242 YVETKVLPHMKIRVAIEFFTQLCSEKGDKMAVLEARKHLSFFVKGIENAAKIRDKINRIN 301 Query: 305 DASEQLEALEA 315 +A+E LE L+ Sbjct: 302 NATELLEFLKE 312 >UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonellaceae RepID=C9KMX2_9FIRM Length = 322 Score = 364 bits (935), Expect = 2e-99, Method: Composition-based stats. Identities = 123/319 (38%), Positives = 182/319 (57%), Gaps = 1/319 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG++ + + APMAG+TD +R + ++MG L +EM+SS + ++++ + Sbjct: 1 MKIGEFSFKTPVFLAPMAGVTDTAYRIIAHDMGCPLCFAEMVSSQGIHFRNERTLAMLQS 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 E +QI + P+ A+AA G A I+D NMGCPA K+ + GSAL++ P+ Sbjct: 61 EKEERPLAMQIFANTPEMAAEAAAFVEALGTADILDFNMGCPAPKIVKNGEGSALMRDPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +IL+ + AV +PVT+K+R GW N E+A+LAE+ G+ A+ +HGRTR + G Sbjct: 121 RAFAILSAIRKAVKMPVTVKMRKGWDAASVNVVEMAKLAEEAGVDAIAVHGRTREQFYTG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A+++ I VK+ V IPVIANGD+ + TG D +MIGRAAQG PWIFR+ H Sbjct: 181 RADWEIIGEVKRAVKIPVIANGDVRTFDDLDKIRAVTGCDGVMIGRAAQGNPWIFRQFTH 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TGE LP + E ++ H+ L + G G R RKH +WY + R Sbjct: 241 YLETGERLPGPTMKERAAVILRHLDLLLKYKGDYVGPREMRKHATWYTRGIVHGAILRDR 300 Query: 300 FNAIEDASEQLEALEAYFE 318 FN + +E LE YFE Sbjct: 301 FNKAVTREDFVEILEEYFE 319 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 127/318 (39%), Positives = 187/318 (58%), Gaps = 2/318 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +I ++ N ++ APMAG D FRT+C E GAGL +EM+S+ V + ++ + Sbjct: 3 FKIADIEIENNVVLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYM 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRK-LAGSALLQYP 118 + +QI G+D A + I + +DINMGCP KV +K AG+ALL+ Sbjct: 63 ENSEKPLGIQIFGTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDV 122 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + + ILT VV AV PVT+K+R GW ++ N E+A+ ED G+ A+ IHGRTR ++ Sbjct: 123 NRIHEILTAVVKAVHKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQMYT 182 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G+A +D IR V++ V I VI NGD+ P A+A++++TG DA+M+GRA++G PWIFR+I Sbjct: 183 GKANWDIIRDVRKAVDIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIA 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL+TGEL+PP E +L H+R L + R H S+YLQ+ + +FR Sbjct: 243 KYLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRM 302 Query: 299 TFNAIEDASEQLEALEAY 316 N +E E + LE Y Sbjct: 303 KLNQLEHEQEIFKILEEY 320 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 122/319 (38%), Positives = 177/319 (55%), Gaps = 3/319 (0%) Query: 1 MRIGQYQLRN-RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG L N L+ APM ++D PFR +C E GA L +E +SS + ++ KSR ++ Sbjct: 2 VKIGNITLGNFPLLLAPMEDVSDPPFRAVCKEKGADLMYTEFISSEGLIRDAIKSRRKLD 61 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D +QI G D + MA AA+I + ++DIN GCP KKV K AGS +L+ Sbjct: 62 IFDYERPVGIQIFGGDEEPMAMAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKDIP 121 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + + VV A +PVT+K R GW + +N EE+A+ +D GIQALTIHGRTR ++ G Sbjct: 122 KMVKLTAAVVKATKLPVTVKTRLGWDDDTKNIEEVAERLQDVGIQALTIHGRTRTQMYKG 181 Query: 180 EAEYDSIRAVKQK--VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 A++ I VK + IP+ NGDI P +A A + G D +MIGRAA G PWIF EI Sbjct: 182 HADWTLIGKVKNNPRIHIPIFGNGDICTPEQAIAAREKYGVDGVMIGRAAIGYPWIFNEI 241 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 +H++ TGE LPP + E + H++ + G G R+H + YL+ +FR Sbjct: 242 KHFMQTGEHLPPPSVLERVEVCKKHLQHSVQWKGDVVGILEMRRHYTNYLKGLPHIKEFR 301 Query: 298 RTFNAIEDASEQLEALEAY 316 + + + L+A Sbjct: 302 QQLVTCSTLAAVEDVLDAI 320 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 359 bits (922), Expect = 8e-98, Method: Composition-based stats. Identities = 116/321 (36%), Positives = 169/321 (52%), Gaps = 2/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M I +++ ++ APMAGITD R L G GL +EM+S+N V D +R + Sbjct: 20 MIIKSLHIKHNILLAPMAGITDLACRLLMRPYGIGLAFTEMISANGLVLGGDATRDLLAS 79 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +Q+ G +PK ++ A + G +ID+N+GCP KKV R AGSAL+Q P Sbjct: 80 TPSDRPLGIQLFGENPKYLSQACKQVESHG-DLIDLNIGCPVKKVVRSGAGSALMQTPAR 138 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V I+ + A +P+T+KIR GW H N EIA +AE G+ A+T+H RTR+ F+G Sbjct: 139 VAQIIAAMRRATHLPLTVKIRAGWDASHINFLEIAHIAEQEGVDAITLHPRTRSQGFSGS 198 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A +D I +K++ +IPVI +GDI + A+ +L TG DA+MIGR G PW+ R+I Sbjct: 199 ANWDLIAELKRRSTIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGNPWLARDILAM 258 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 G+ P+ E + H+ F K RKH+ WY + QFR + Sbjct: 259 RQ-GQTPAPVTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLPGAAQFRSSI 317 Query: 301 NAIEDASEQLEALEAYFENFA 321 N E + +FE+ A Sbjct: 318 NRAMSIEEMRTLVMHFFEHAA 338 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 177/320 (55%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG + + ++AAPMAG+TD+PFRT+ E L +EM+S + + + + Sbjct: 9 LRIGPWSVFPPVVAAPMAGVTDKPFRTVLKEHRCPLVYTEMISDKALTYANRNTMEILDI 68 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E VQI GS+P MA+AARI +GA IIDINMGCPA K+ R G+ LL+ PD+ Sbjct: 69 TGEARPIAVQIFGSEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPDL 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I VV AV VPVT+K+R GW+ E+A E G+QALT+HGRTR ++G+ Sbjct: 129 AVDIAEAVVRAVQVPVTVKMRIGWSSGRIVAPELAPRLEAVGVQALTVHGRTREMFYSGQ 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I ++VSIPVI NGD+ +P A +L TG A+MIGR G PWIF + H+ Sbjct: 189 ADWSVIAETVRQVSIPVIGNGDVWEPDDALRMLVETGCAAVMIGRGCMGNPWIFSRLVHW 248 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +TGE+ PP E H+ + G +G R R H+SWYL+ + R Sbjct: 249 AETGEMPPPPSPEERINQALLHLEHIVALKGEERGVREMRGHLSWYLKGIRGASRLRAEI 308 Query: 301 NAIEDASEQLEALEAYFENF 320 N D + L + E Sbjct: 309 NQAPDRESVVRLLTEHREQV 328 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 148/312 (47%), Positives = 197/312 (63%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + L APMAG++DRPFR LC E GAGL V+EMMS+ P++ S KSRLR + ++ Sbjct: 19 PVIIDPPLALAPMAGVSDRPFRQLCREYGAGLVVTEMMSAKPELQSSAKSRLRQIDSNDI 78 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 R VQ+ G+DP E+A+AAR V GAQ+ID+N+GCPAKKV ++ AGSAL+ PD V + Sbjct: 79 EPRAVQLLGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPDTVARL 138 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 L +V AVD PV+LK+RTG E RN IA++AE+ GI L+IHGRTRA + GEAEYD Sbjct: 139 LEALVAAVDCPVSLKMRTGPDREWRNAVAIAKIAENAGISMLSIHGRTRADRYEGEAEYD 198 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 +I V V +PV ANGDIT P KAR V+ +TGA +M+GR A G+PWIF ++ L Sbjct: 199 TIAEVVAAVDLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPWIFSALKAELTGQ 258 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 L P AE + +++ YG + G RIARKH+ WY ++ R FN E Sbjct: 259 PLPSPPDRAERVVAIKKQFEKIYHHYGDSLGIRIARKHLGWYAASLELGEEDRAVFNRFE 318 Query: 305 DASEQLEALEAY 316 +Q + L + Sbjct: 319 HPEQQRQWLAQH 330 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 356 bits (915), Expect = 5e-97, Method: Composition-based stats. Identities = 152/322 (47%), Positives = 215/322 (66%), Gaps = 2/322 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IG+Y L ++++ APMAG +D+PFR +C E GA LT SEM+ + ++KS+ R+ Sbjct: 1 MNIGKYLLSSKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQKHLLNTNKSKHRLDF 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E ++QIAGS+ +E+A++A+ +E GA IIDINMGCPAKKV K AGSAL++ + Sbjct: 61 RSEQSPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ I+ VVNAV++PVTLK+RTGW E++N IA++AED GI+ L IHGRTRA +NG+ Sbjct: 121 VEDIIKAVVNAVNIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTRAQKYNGD 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+++ +K VSIPV+ANGDIT KA+ VLDYTGADA+M+GRA QG PW+ +I +Y Sbjct: 181 AEYDTVKKIKGIVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNPWLVGQINNY 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ--EHAPNDQFRR 298 L TG+ L + L+ H+ ++HDFYG G +++RKH+ WY + F Sbjct: 241 LKTGKSPKAPLLDKKISLILRHILQIHDFYGHKMGTQLSRKHIFWYSMHLDQEKGSAFWP 300 Query: 299 TFNAIEDASEQLEALEAYFENF 320 N + D SEQ + + Sbjct: 301 NINRVTDHSEQYLKFHDFLYSI 322 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 353 bits (907), Expect = 5e-96, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 180/320 (56%), Gaps = 1/320 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I +L N L+ AP+AG+T+ P R + GA L SEM+SSN + K+ M Sbjct: 2 LKIASLKLDNPLVCAPLAGVTNLPLRLMAKRHGAALVCSEMISSNGLIRYQKKTMELMAS 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +E ++QI GSDP +AD+ARI E GA I+DIN GC KKV + AGSAL+ Sbjct: 62 KEEERPLSIQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADLPR 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + IL EV A+ +P T+K+R+GW + ++A+D G+ A+ +H RT F+G Sbjct: 122 AEKILKEVRKAISLPFTIKMRSGWDASGDEAMALGRIAQDAGVDAVALHPRTAKQGFSGH 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +++ I+ +KQ+++IPVI NGD+T P +++ TG D +MIGRA PWIFR+ Sbjct: 182 SDWSQIKRLKQELTIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRAVLYAPWIFRQALCL 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+ + + L + K++L ++ + D+ G G R+ R ++W+++ +FR Sbjct: 242 LEN-RPMEEIDLDDRKKVLFDYLDDTMDYLGEEHGCRVMRSRLAWFVKGLPNAAKFRGEI 300 Query: 301 NAIEDASEQLEALEAYFENF 320 I + + +E +F + Sbjct: 301 TRIASKEQARDLIEEFFRSI 320 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 168/320 (52%), Positives = 218/320 (68%), Gaps = 6/320 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG ++L N + APMAG+TD P R LC E+GAG+ V+EM++S+P++ S KS LR H Sbjct: 15 LKIGGFKLANPVALAPMAGVTDLPMRELCVELGAGMAVAEMLTSDPKLLASRKSSLRRRH 74 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + G+R+VQI GS+P+++A+AAR+N + GA +IDINMGCPAKKV +K AGSALL D Sbjct: 75 SAKGGLRSVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDR 134 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV+AVDVPVTLKIRTG +P+ RN IA++AED GIQ LT+HGRTRA F GE Sbjct: 135 VAEILKAVVSAVDVPVTLKIRTGVSPQQRNGVAIAKIAEDAGIQLLTVHGRTRADRFKGE 194 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEY +I + VSIPV+ANGDIT P +A AVL TGA +MIGRAA GRPW+ I Sbjct: 195 AEYHTIERIVDAVSIPVLANGDITTPAQALAVLQKTGAAGIMIGRAALGRPWLPGAIAQS 254 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN-----DQ 295 L G P LAE + H+ LHDF+G G RIARKHV W++ + + Sbjct: 255 LA-GLRTPLPSLAERFLQMRCHLTALHDFHGDFMGVRIARKHVGWFIDAIENDVASSFTE 313 Query: 296 FRRTFNAIEDASEQLEALEA 315 ++R FNA++DA Q L+ Sbjct: 314 WKRHFNALQDADAQQTLLQT 333 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 349 bits (896), Expect = 7e-95, Method: Composition-based stats. Identities = 103/319 (32%), Positives = 166/319 (52%), Gaps = 3/319 (0%) Query: 1 MRIGQYQLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 MRIG +R L APM ++D PFR LC GA + +E +SS + E + ++ Sbjct: 65 MRIGHLDFDDRPLFLAPMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLREQEHEHQKLE 124 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 DE +Q+ G E+ +A + +G +IDIN GCP +K+ +K G+ +L+ D Sbjct: 125 IFDEERPIGIQVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLD 184 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +++I V+ PVT+K R GW + + ++A++ ED G+ ALT+H RTR + G Sbjct: 185 KMRNITAAVMEEATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKG 244 Query: 180 EAEYDSIRAVKQK--VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 +A ++ +R +K++ +P I NGD DP A+ + TG D +M+GR A G PWIF Sbjct: 245 DARWEWLRTIKEEGTRDMPFIGNGDALDPEAIEAMFEETGVDGVMLGRGALGNPWIFERA 304 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 + Y++TGEL PP E +++ H+ ++ G G RK+ S Y + R Sbjct: 305 KTYMETGELPPPPDWEERVQVVAEHLSLKCEWLGERTGVMEMRKNYSSYFKGFRNASTLR 364 Query: 298 RTFNAIEDASEQLEALEAY 316 E + LE + + Sbjct: 365 HELMQPETKAGVLEVMLNF 383 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 171/309 (55%), Gaps = 1/309 (0%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 +L ++ APMAG+TD P+R LC EMG L+ +EM+S+ + + + +VH EPG+ Sbjct: 36 ELPGNILMAPMAGVTDLPYRILCKEMGLSLSFTEMVSAKAIYYGNQNTDSLLVHKGEPGL 95 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 + Q+ GSDP MA+ A E ID+NMGCP KV R GSAL+ + + +L+ Sbjct: 96 VSAQLFGSDPALMAEMACRIEE-DFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAEQVLS 154 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + A+ P+T+K R G+ + N E A++AE G+ ++TIHGRTR + G+A + I Sbjct: 155 TMAKALKKPLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTREQYYRGKANWQYI 214 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + K+ V IPV NGDI A A+L TG D + + R QG P++ R L G+ Sbjct: 215 KEAKEAVKIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGNPFLIRACVSLLSEGKK 274 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 LPP+ L+E K ++ H++ + + G RKH+SWY++ ++R+ N D Sbjct: 275 LPPVSLSERKEMMLRHLKLMVEIKGEHLALLEMRKHLSWYMEGLENAARWRQRVNTENDL 334 Query: 307 SEQLEALEA 315 + + + Sbjct: 335 EKVFQMVRE 343 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 176/321 (54%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG L R I AP+AGITD PFR L G L SEM+SS+ ++S+K+ + Sbjct: 1 MRIGPVFLAGRTILAPLAGITDAPFRRLAKAAGCALVYSEMVSSHGLFYQSEKTGAMLRT 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E VQI G P M AA + SGA +IDIN GC KK+ + AG+AL++ + Sbjct: 61 TPEEAPFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ V +AV +P+T+K+R+GW P+ + +A++AE G+ A+ +H RT F G Sbjct: 121 AAEVIQAVRDAVSIPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRTATQGFGGT 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I A+KQ+ +PVI NGDI P AR +LD TG DA+M+GRAA G PWIF++I Sbjct: 181 ADWSLIAALKQRTGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAPWIFKQINAC 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L G+ + L ++ ++ + YG R+ R + W+ + FR + Sbjct: 241 LA-GKPVVEPSLEHRFEVMSEYINAMVAHYGEDLACRVMRSRLGWFTRAMPHGTLFRESI 299 Query: 301 NAIEDASEQLEALEAYFENFA 321 IE + L A+ Y E A Sbjct: 300 RRIETKDQVLAAVSDYRERLA 320 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 177/321 (55%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG L LI APMAG TDR FR L E GA LT +EM+S+ ++ + + + Sbjct: 5 LKIGPVTLAAPLIMAPMAGYTDRVFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDL 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 EPG VQ+ G +P+ MA A RI V +GA IID+NMGCP K+ + GSAL++ Sbjct: 65 KGEPGPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPR 124 Query: 121 VKSILTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +I+ +V A VPVT+K+R GW + N E A+ G A+ IHGRTR+ ++G Sbjct: 125 AAAIVAAMVRAAGPVPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ R VK+ V +PVI NGD+ A +L TG D +M+GR A G PW+ I+ Sbjct: 185 RADWSYFRRVKEAVDVPVIGNGDVRTARDAVTMLAETGCDGVMVGRGAVGNPWLLTAIRA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 L+ PP+ + + C H++ L + G + RKH++ Y + + R+ Sbjct: 245 VLEGRPEPPPVDVRTRMTMACRHLKLLVELKGETTAVKEMRKHLACYFRGLPGAARLRQQ 304 Query: 300 FNAIEDASEQLEALEAYFENF 320 N + A+E + A++AY ++ Sbjct: 305 INTLTTAAEVIAAIKAYLRDY 325 >UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes RepID=Q5FMA1_LACAC Length = 342 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 108/320 (33%), Positives = 176/320 (55%), Gaps = 1/320 (0%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 +I + NR++ APMAG+++ FR +C E GAGL V EM+S + ++ + K+ M Sbjct: 7 KIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGAGLVVCEMISDHGIIYRNKKTLSMMDVD 66 Query: 62 DEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++QI G + + AA+ I+ + A IIDINMGCP KV + AGS L + Sbjct: 67 PREHPMSIQIFGGTEETLLQAAQYIDQNTDADIIDINMGCPVPKVTKTDAGSKWLLDSNK 126 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + ++ VV V PV++K+R GW +H E A A++ G + +HGRTR ++ GE Sbjct: 127 IYQMVHAVVQNVQKPVSVKMRIGWDRKHVFAVENALAAQEAGASMIAMHGRTRKQMYQGE 186 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+++ + V Q + +P +ANGDI P A+ LD G A+M+GRAA G PWI +++ HY Sbjct: 187 ADWEVLHDVAQVLDVPFVANGDIATPELAKKALDDIGCTAVMVGRAALGNPWILKDMVHY 246 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGE LPP + E ++ L + +G + R+ ++YL+ + + R Sbjct: 247 LETGETLPPQTVREKVETAKHQLQGLIEIHGEKRAVPEFRQQAAYYLKGIPRSARTRAKI 306 Query: 301 NAIEDASEQLEALEAYFENF 320 N + E + L+ + + + Sbjct: 307 NEVWTRQEVYDLLDNFVDEY 326 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 136/322 (42%), Positives = 190/322 (59%), Gaps = 6/322 (1%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE 63 G + +I APM+G+TD PFR L EMG G+ VSEM++S V E+ K+ LRM Sbjct: 35 GGVTIETPVILAPMSGVTDLPFRMLAREMGTGMVVSEMIASWAMVREN-KTTLRMAEPAG 93 Query: 64 PGI----RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKV-NRKLAGSALLQYP 118 P +Q+AG DP+ MA+AARI ++ GA++IDIN GCP KKV + AGSAL++ Sbjct: 94 PPSPGSPNALQLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDE 153 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 IL V AV VPVTLK+R GW + N +A++AE GI+ +T+HGRTR + Sbjct: 154 VTAAKILEATVKAVSVPVTLKMRMGWDHQSLNAPALAKIAEASGIRMITVHGRTRQQFYE 213 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G+A++ + VKQ S+PVI NGDI +A +GAD +M+GR GRPW R++ Sbjct: 214 GKADWAFVARVKQATSLPVIVNGDIQTVEQAAEARAISGADGVMVGRGCYGRPWFPRQVA 273 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL G +P PL+E K++L H + +G G R+ARKHVSWY + FR Sbjct: 274 AYLRDGVHIPEPPLSERKQILLNHYDAMLRCFGTDAGMRLARKHVSWYTTGLHGSAAFRA 333 Query: 299 TFNAIEDASEQLEALEAYFENF 320 T N + D S+ L ++ +F+ Sbjct: 334 TVNRLADPSQVLALIDTFFDPL 355 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 179/323 (55%), Gaps = 3/323 (0%) Query: 2 RIGQYQLRN-RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG ++ + L+ APM ++D PFR LC E GA + +E +SS + E+ KS +++ Sbjct: 3 KIGNIEVGDFPLLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIREAAKSTMKLDI 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ +QI G++ + M + I +SG IIDIN GCP KKV K AG+ +L+ D+ Sbjct: 63 YEKERPVGIQIFGANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKDIDL 122 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + S+ +V +P+T+K R GW + E+A+ +D G +A++IHGRTRA ++ GE Sbjct: 123 MVSLTEAMVKNTSLPITVKTRLGWDHDSIKIVEVAERLQDVGCKAISIHGRTRAQMYKGE 182 Query: 181 AEYDSIRAVKQK--VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A++ I VK + IPV NGD+ P KA + D G D MIGRA+ G PW FRE++ Sbjct: 183 ADWAPIAEVKNNPRMHIPVFGNGDVDSPEKAMEMRDNFGLDGAMIGRASIGYPWFFREVK 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 HY +TG+ L P L E H++ D+ G G R+H + Y + ++R Sbjct: 243 HYFETGKHLAPPTLEERVDAARRHLQMAIDWKGERLGVFETRRHYTNYFKGIPHFKEYRM 302 Query: 299 TFNAIEDASEQLEALEAYFENFA 321 +D+ + +A + + FA Sbjct: 303 KMVTSDDSVDVFKAFDEVEKEFA 325 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 342 bits (878), Expect = 9e-93, Method: Composition-based stats. Identities = 119/317 (37%), Positives = 176/317 (55%), Gaps = 5/317 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMV 59 ++IG L +R++ +P++G+TD FR L + +EM+S+ ++ +++ Sbjct: 33 LQIGSLTLHSRVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEI--HHLRTLPQVM 90 Query: 60 HID-EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 ID ++Q+ P MA+AA+ V GAQ +DINMGCP K+ +K GS+LL+ P Sbjct: 91 EIDPRENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQP 150 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 V ++I+ VV AVDVPVT+K R GW N E AQ +D G Q LT+HGRTRA +N Sbjct: 151 AVAEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQGYN 210 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A + I VKQ ++IPVIANGDI A A L+ TGAD +M R + G P++ EI+ Sbjct: 211 GRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEIE 270 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 H+ TGE +AE H++ L ++ G +G ARKH++WY ++ R Sbjct: 271 HFFKTGEKRKAPTVAEKLTCAQEHLQMLWEYKGQ-RGLFQARKHLAWYCKDFPGAAALRE 329 Query: 299 TFNAIEDASEQLEALEA 315 I E + L+ Sbjct: 330 QLFQINSVQEGKDLLDQ 346 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 166/312 (53%), Gaps = 3/312 (0%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 L AP+AG +D FR +C GA + SEM+S++ S K+ + + +QI Sbjct: 11 LFLAPLAGYSDSAFRQICKNWGAEVLYSEMVSADGLTRNSAKTLQYVQFDESEHPFGIQI 70 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 GS+P MA A + + +DINMGCP KKV RK AGSAL+Q P + I+ EV NA Sbjct: 71 FGSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKIVKEVKNA 130 Query: 132 V--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 + +P+++K R+GW +++N + + ++CG L +H RT + +F+G + ++ I+ + Sbjct: 131 LLGRIPLSVKFRSGWNFQNQNYLQFGLMLQECGADFLCLHPRTSSQMFSGTSNWEQIKIL 190 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 KQ V IPV+ NGDI P A+ ++ T D +MIGR A G+PW+F + + + TG P Sbjct: 191 KQNVQIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKPWLFAQSRQLISTGTYNPV 250 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 + E+ + + AH+ + + R R H+ +Y + + R N E+ SE Sbjct: 251 I-QKEIVKTIFAHLDKALLYKSEDVVVREMRAHLCFYTKGILGGAELRNQINHTENISEL 309 Query: 310 LEALEAYFENFA 321 + F Sbjct: 310 KAIILKGFSRIG 321 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 340 bits (873), Expect = 3e-92, Method: Composition-based stats. Identities = 136/317 (42%), Positives = 196/317 (61%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 R+G Y + N L+ APMAGITD PFR +C G GL V+EM++S +++ Sbjct: 9 FRLGTYMIDNPLVLAPMAGITDLPFRRICKRFGVGLMVTEMIASRAVDMGRERTERMAEL 68 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 D+ ++QIAGSDP+ + +AAR V GA +DINMGCP KK+ +++AGSA+L+ + Sbjct: 69 GDDEHPVSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDEAL 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V +L VV AVDVPVTLKIRTGW + +N + IA++AED GIQ LT+HGRTRA +F+G Sbjct: 129 VARVLAAVVAAVDVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRAQMFHGH 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A ++ I K VSIPVI NGDI D AR ++ + D +M+GRA QG PW+ E+ Sbjct: 189 ACWEDIGLAKAAVSIPVIGNGDIVDAESAREMIRVSNCDGVMVGRAVQGNPWVLGEVHAA 248 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 + + P AE ++ H+R L + +G ++ARKHV WY + + +FR++F Sbjct: 249 IAGLPIPPKPTAAERWLIVDEHMRHLVEHHGIRTASKLARKHVIWYSKGLHGSAEFRQSF 308 Query: 301 NAIEDASEQLEALEAYF 317 + D + ++ AYF Sbjct: 309 QVMTDWQQMMDFAAAYF 325 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 339 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 174/320 (54%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 RIG QL + APMAG++D +R + +MGA LT +EM+S+ + ++K++ + Sbjct: 5 RIGNIQLDGFALLAPMAGVSDLAYRVIARKMGAALTTAEMVSAKGLYYHNEKTKDMLKIA 64 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 +E ++Q+ GSDP MA A++ ++GA I+DINMGCP +KV + GSAL++ + Sbjct: 65 EEEHPVSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVTLA 124 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I++ V AV +PVT+K+R GW+ + N E+A AE G A+T+HGRTR + G A Sbjct: 125 AEIISAVTAAVKIPVTIKMRLGWSRDTINAVELAMAAESAGAAAITVHGRTREDFYMGTA 184 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ I+ V V IPVI NGD+ D A+A+++ TG A+ IGRAA G PW+F + YL Sbjct: 185 DWREIKKVVDAVRIPVIGNGDVGDGPAAKALMEETGCAAVAIGRAAWGNPWVFGAVNTYL 244 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 +TGE+LP E + H+ L G R R H S Y RR Sbjct: 245 ETGEILPGPSWEERLAMARKHLHGLCVEKGERIAVREMRAHASRYFHGLPKATVLRREIM 304 Query: 302 AIEDASEQLEALEAYFENFA 321 E L Y + Sbjct: 305 KALTEEEFGRILTGYEKELG 324 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 172/324 (53%), Gaps = 3/324 (0%) Query: 1 MRIGQYQLR-NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG +L L+ APM ++D PFR LC GA + SE +SS + ++ KSR+++ Sbjct: 4 VKIGNIELPEFPLLLAPMEDVSDPPFRRLCKTHGADMMYSEFISSEGLIRDAIKSRMKLD 63 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D +QI G D + M +++I ++DIN GCP KKV + AG+ +L+ D Sbjct: 64 IFDYERPVGIQIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKDVD 123 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ + V+ D+PVT+K R GW N +E+A+ +D G+QALTIH RTRA ++ G Sbjct: 124 LMVRLTKAVIKGTDLPVTVKTRLGWDESSINIDEVAERLQDIGVQALTIHARTRAQMYKG 183 Query: 180 EAEYDSIRAVKQKVSI--PVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 +++ I VK I P+ NGDI P KA + G D +MIGRAA G PWIF EI Sbjct: 184 HSDWSHIARVKNNPRITMPIFGNGDIDSPEKALQYKNEYGIDGIMIGRAAIGYPWIFNEI 243 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 +HY TGE LP + + H++ ++ G G R+H + Y + +F+ Sbjct: 244 KHYFKTGEHLPAPTVIDRVEAARNHLKWSMEWKGERLGIVEMRRHYTNYFKGIHSFKEFK 303 Query: 298 RTFNAIEDASEQLEALEAYFENFA 321 + ++ ++ + +A Sbjct: 304 QKLVTTDEPENLFAIMKEIEQVYA 327 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 170/322 (52%), Gaps = 10/322 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG Y L N I APMAG+++RPFR + ++ GA L +E++S+ + + ++ + Sbjct: 34 LQIGPYSLPNPYILAPMAGVSERPFRVIAFKWGAALCPTELVSAQGLMRANQRTLKYLRF 93 Query: 61 IDE-PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 E ++QI G +P+ MA AA + GAQIIDINMGCP KKV + AGSAL+ P Sbjct: 94 SPEVERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPL 153 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 I+ + A +PVT KIR+GW HRN ++A G AL IH RTR ++G Sbjct: 154 RAARIVQAIAEATGLPVTCKIRSGWDAHHRNYLQMAGELFSAGCAALAIHPRTRDQGYSG 213 Query: 180 EAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A++ I +K+ +I NGD+ P AR + + TG D +MIGR A G PWIFRE+ Sbjct: 214 FADWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGRGALGNPWIFRELA 273 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKG-YRIARKHVSWYLQEHAPNDQFR 297 PP E + H R +F G G R R+H++WY FR Sbjct: 274 GG-------PPPTPEERCAGVLEHFRAHVEFVGEPLGAVRSFRRHMAWYAHGLHGAAAFR 326 Query: 298 RTFNAIEDASEQLEALEAYFEN 319 N +E + +A+ +F + Sbjct: 327 AEVNTLETPASVEDAVVRFFAS 348 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 176/321 (54%), Gaps = 2/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG ++R R + AP+AGIT+ PFR + G L SEM+S+ + S+K+ + Sbjct: 1 MKIGDLEIRGRTVLAPLAGITNLPFRIIAKGCGCTLVCSEMVSAKGLEFNSEKTVQLLRT 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +VQI G++ MA+AAR E A IIDIN GC KKV R AG AL++ D Sbjct: 61 DACERPVSVQIFGAEALSMANAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKDMD 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++I+ V AV +P T+KIR+GW +IA++AED G+ A+ IH RT A F G Sbjct: 121 NARAIIRAVRRAVSMPFTIKIRSGWDSSASQAFDIARMAEDNGVDAIAIHPRTAAQGFRG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ I +K+ ++IPVI NGDIT P + A++ TG D +M+GRAA G P+IF I+ Sbjct: 181 RADWSMIARLKEMLTIPVIGNGDITTPEQGVAMIQETGCDGVMVGRAAMGNPFIFGGIEA 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 L GE E+ +++ V + G R+ R ++W+++ A FRR Sbjct: 241 LLR-GEAWNEPSPMEIFQIMEEMVESHVAYLGERPACRMMRSRLAWFVKGFAGASVFRRE 299 Query: 300 FNAIEDASEQLEALEAYFENF 320 IE + + + Y +F Sbjct: 300 LTGIETLDQAMALIRRYEADF 320 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 178/318 (55%), Gaps = 2/318 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 MR+G Y+L + L +P+AG T+ PFR E+G G ++++++ + + + + Sbjct: 1 MRLGPYELSSNLFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLLERNPAALKLVA 60 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 E ++Q+ GS P EM DAARI + GAQ +DINMGCP +KV R GSA++ + Sbjct: 61 SSAEDRPMSIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTELN 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +++ ++ AV +PVT K+R GW E+ ++A++ ED G+ A+ +HGRTRA F+G Sbjct: 121 QTAALVRGMIEAVKIPVTAKMRLGWDDENLTAPDLARVLEDAGVAAVFVHGRTRAQGFSG 180 Query: 180 EAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 I AV Q V IPVI NGD+T P ARA+++ TG + IGR A PWIFR Sbjct: 181 TVNLAGIAAVVQAVKRIPVIGNGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWIFRRTH 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 H L +GEL P E R++ H +FYG KG R+ RK WY + P F+R Sbjct: 241 HLLTSGELWPEPGFDERVRVMRRHFERYCEFYGEEKGPRLFRKVAPWYAKRFGPAKPFKR 300 Query: 299 TFNAIEDASEQLEALEAY 316 I+ ++ AL Y Sbjct: 301 RIITIDSRADFDAALAEY 318 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 152/322 (47%), Positives = 202/322 (62%), Gaps = 5/322 (1%) Query: 1 MRIGQYQLR-NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 M++G + L + APMAG++DRP R + +GA VSEM++S+ ++W SDKSR R+ Sbjct: 1 MQLGPHHLPDPPVFLAPMAGVSDRPLRLIARRLGASAAVSEMVTSDTRLWGSDKSRHRLD 60 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 H EP R VQ+ G++P+ +A+AAR NV GA +ID+N+GCPAKKV K AGSALL P+ Sbjct: 61 HRQEPRPRIVQLLGNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 V+ +LT +V +V+VPVTLK+R G E N E IA +A+DCGI LT+HGRTRA + G Sbjct: 121 RVRELLTALVESVEVPVTLKMRLGLDRERVNAETIAGIAQDCGIAMLTVHGRTRADAYRG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A+Y++I V + VSIPV+ANGD+ D AR L +GA LMIGR AQGRPW+ +I+ Sbjct: 181 TADYEAIARVVRAVSIPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPGQIRA 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ----EHAPNDQ 295 L + L+ H+R LH YG +G RIARKH+ WYLQ P Sbjct: 241 SLAGEPVPADPAWDARLALIEEHLRALHAQYGEMQGVRIARKHLGWYLQHMGLGEDPTRA 300 Query: 296 FRRTFNAIEDASEQLEALEAYF 317 R + A ASEQL L A Sbjct: 301 ARASLLAATTASEQLGRLRAIL 322 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 174/317 (54%), Gaps = 3/317 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 RIG ++ +R + APMAG+T+ FRT+ E GAGL V EM+S ++ ++K+ + Sbjct: 37 FRIGDVEIPHRTVLAPMAGVTNSAFRTIAKEFGAGLVVMEMISEKGLLYNNEKTLHMLHI 96 Query: 61 IDEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + ++Q+ G D + + AA I + A I+DINMGCP KV + AG+ L+ PD Sbjct: 97 DENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPD 156 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I+ EV + +D+P+T+K+RTGWA E A AE G+ AL +HGRTR ++ G Sbjct: 157 KIYHIVKEVTSVLDIPLTVKMRTGWADSSL-AVENALAAESAGVSALAMHGRTREQMYTG 215 Query: 180 EAEYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +++++ V + IP I NGD+ A+ +++ G DA+MIGRAA P++F +I Sbjct: 216 TCDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMNNPYLFTQIN 275 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 H+ +TG+ LP LP A+ + H++ L + G R R YL+ A + R Sbjct: 276 HFFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAVREFRGLAPHYLRGTAGAAKVRG 335 Query: 299 TFNAIEDASEQLEALEA 315 + E +E E Sbjct: 336 AVSRAETLAEVEAIFET 352 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 2/317 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++G L N + AP+AG +D PFR + GL EM+ + V + + Sbjct: 7 FQLGNLTLPNPVFYAPLAGCSDFPFRQMSARYSPGLMYCEMVKMDALVRHDPNTFRMLDF 66 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + Q+ GS P+ A AA+I + G ++D+N GCP KV + +GS LL+ P + Sbjct: 67 DKDMHPIGGQLCGSKPQLAAKAAKIIEDLGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLL 126 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + IL+E+V AV +PVT+KIR GW E+ EEI Q+AE G +A+TIHGRTR + G Sbjct: 127 IGEILSEMVAAVKIPVTVKIRAGWDDENLCAEEITQIAEKAGAKAITIHGRTRQQAYRGP 186 Query: 181 AEYDSIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A +D I+A KQ I VI NGD+ DP A+ + +YTG DA+++ R G+PWI ++I + Sbjct: 187 ANWDHIKASKQVAKHIKVIGNGDVMDPTSAKRMFEYTGCDAVLVARGTMGQPWIAQDILN 246 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL G + P + ++ L H +Y P + R+ WY++ +FR Sbjct: 247 YLQGGTIRVHTP-EDCRQALYEHFLCTERYYNPRQVVIEMRRVGCWYIKSSGGTREFRGL 305 Query: 300 FNAIEDASEQLEALEAY 316 + + + ++ + Sbjct: 306 ISRASSPDQVKDLIQNF 322 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 167/310 (53%), Gaps = 2/310 (0%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 L APMAG+++ PFR LC+ GA + V+E +S+ E++ + ++ E VQ Sbjct: 15 PLYLAPMAGVSESPFRRLCHAHGADVVVTEFLSAEGIRRENEATISKLRFAPEERPIGVQ 74 Query: 71 IAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 I GS+P MADAA + + +DIN GCP KKV R+ GS L+ D+V+ I+ V Sbjct: 75 IFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDLDLVEEIIRAVS 134 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 A +PVT+K R+GW E R+ IA +D G + +H RTR +++G A +D I V Sbjct: 135 KATPLPVTVKTRSGWNEEMRDPVGIALRMQDAGAKVFALHARTRTQMYSGSANWDEIARV 194 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 + + IPV+ NGDI L A+ +LD+T AD +MIGR + G+PW+F++ + +D + Sbjct: 195 AEALDIPVLGNGDIKTALDAKRMLDHTKADGIMIGRGSYGQPWVFKQTRALIDGTPVPET 254 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYR-IARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 + E + H R + + A G RKH+ WY++ + + R + + D +E Sbjct: 255 PGVQERFAIALDHARMVQGYEVDAIGAALEFRKHLGWYVKGLPNSAELRAKLHQVRDFAE 314 Query: 309 QLEALEAYFE 318 Y E Sbjct: 315 VETIFTNYLE 324 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 102/314 (32%), Positives = 157/314 (50%), Gaps = 3/314 (0%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 ++ N ++ APMAGITD FR +C E G T +EM+S N + + + M Sbjct: 5 KIFNEIMLAPMAGITDSAFRQICEENGCDKTFTEMVSVNALDFNNRATEEIMYTAYSEKN 64 Query: 67 RTVQIAGSDPKEMADAAR--INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +QI G D + + IN + I NMGCPA K+ GSAL++ V I Sbjct: 65 CNIQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKKVYEI 124 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + D V +KIR G + N E+ + ED GI + +HGRTR ++G+A + Sbjct: 125 GKCLKESTDKIVNVKIRMGIDDDSVNYIEVGKALEDSGIDYVILHGRTRKQQYSGKANWQ 184 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 +IR +K+ +SIPVIANGD+ + +LD TGAD +MI R A G P+IFR+I+ Y+ G Sbjct: 185 AIRKLKETLSIPVIANGDVFSVKDYKDILDETGADGVMIARGAMGNPFIFRQIKDYIQ-G 243 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + P+ ++ + + RKHV WY++ +R N ++ Sbjct: 244 KETSPISYEDILATIKRQYELSLKYKKEKLVINQMRKHVGWYIKGLPQAASYRDRVNKLK 303 Query: 305 DASEQLEALEAYFE 318 + E + LE Y + Sbjct: 304 TSEEIFDLLEEYRK 317 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 11/311 (3%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 L + L AP+AG+TD PFR LC E+GAGL +EM+S+ ++ K++ + Sbjct: 2 NLNSNLFLAPLAGVTDIPFRILCGELGAGLCFTEMISAKGLYYDDKKTKKLLDTDPREKS 61 Query: 67 RTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 +VQI G +P+ +A A R E+ + IDINMGCPA K+ + GSAL+ ++ + ++ Sbjct: 62 TSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAEDVI 121 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 N D+PV++K R G N ++AQ+ E + +T+H RTR ++GEA++ Sbjct: 122 RACKNNTDLPVSVKFRLGIDENSMNYMQLAQICERLKVDYITLHARTRKMFYSGEADWLH 181 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I+ V + V IPV NGD R ++Y+ D +++ R A P+IF + ++ Sbjct: 182 IKRVVENVDIPVFGNGDCFTKEDIRKNMEYSNCDGVLLARGAMQNPFIFSDDENK----- 236 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 EV + H++ +FY + RKH+ WYL+ +++ + N + D Sbjct: 237 -----SKEEVIDTIKKHMQLKLEFYEERRAILEMRKHIQWYLKGFRNSNKVKNKINQLTD 291 Query: 306 ASEQLEALEAY 316 E + L+ + Sbjct: 292 LDEIYKILDEF 302 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 334 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 178/319 (55%), Gaps = 6/319 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +++G+ + ++ APMAG+T++ FR LC E G GL V+EM+++ V +S + H Sbjct: 67 LKLGKLTVDTPVVLAPMAGVTNKAFRRLCSEYGGGLYVTEMVTARALVERKPESMRIIEH 126 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + IR++QI G D + A R+ VE A ID+N GCPA KV R+ G+AL D Sbjct: 127 DPDEKIRSIQIYGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTD 186 Query: 120 VVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 + +I+ V D+P+T+K+R G +H E A++A D G+ A+ +HGRT A Sbjct: 187 LFTAIVQTAVKEASRNDIPLTIKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQH 246 Query: 177 FNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 ++G+A++DSI +++ + +P++ NGDI A +++ TG D ++IGR QGRPW+F Sbjct: 247 YSGKADWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGCQGRPWLFG 306 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQEHAPND 294 ++Q+ + L EV ++ H L + +G +G R RKHV+WY + + Sbjct: 307 DLQNAFEGSSERIRPTLTEVSDMIYRHAELLVETFGDETRGLREIRKHVAWYFKGYPVGG 366 Query: 295 QFRRTFNAIEDASEQLEAL 313 + R + D + E + Sbjct: 367 ELRAKMAQVPDLATFRELI 385 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 334 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 138/313 (44%), Positives = 185/313 (59%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +R+ + L ++ APMAGITDRPFR L GAG+ VSEM++S V R R Sbjct: 40 LRLAEKHLTPPVLLAPMAGITDRPFRDLVMRFGAGMVVSEMVASQEMVQAKPGVRERAEL 99 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+AG + MA+AAR + GA++IDINMGCPAKKV +GSALL+ PD Sbjct: 100 SADVENTAVQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDH 159 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +++ VV AVD+PVTLK R GW N ++A+ A+D GIQ +TIHGRTR + G Sbjct: 160 ALTLIEAVVAAVDIPVTLKTRLGWDDSLLNAPDVARRAQDAGIQMVTIHGRTRCQFYKGR 219 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ +I AVK+ VS+PVIANGDIT P AR LD +GAD +M+GR AQGRPW+ +I H Sbjct: 220 ADWQAIGAVKEAVSVPVIANGDITGPGAARTALDQSGADGVMVGRGAQGRPWLLAQICHD 279 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L + + ++ H + + FYG G R+ARKH+ WY+ + RR Sbjct: 280 LYGIAPPDIPTGSALIDMVRGHYQAMLAFYGTDLGLRVARKHLGWYMDDAGTPATLRRAV 339 Query: 301 NAIEDASEQLEAL 313 D E L L Sbjct: 340 LTSRDTGEVLHLL 352 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 3/313 (0%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG ++ +R + APMAG+T+ FRT+ E AGL V EM+S ++ ++K+ + + Sbjct: 35 IGNVEIPHRTVLAPMAGVTNSAFRTIAKEFSAGLVVMEMISEKGLLYNNEKTLHMLHIDE 94 Query: 63 EPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 ++Q+ G D + + AA I + A I+DINMGCP KV + AG+ L+ PD + Sbjct: 95 NEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDKI 154 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ EV + +D+P+T+K+RTGW+ E A AE G+ AL +HGRTR ++ G Sbjct: 155 YHIVKEVTSVLDIPLTVKMRTGWSDSDL-AVENALAAESAGVSALAMHGRTREQMYTGHC 213 Query: 182 EYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +++++ V + IP I NGD+ + A+ +++ G DA+M+GRAA P+IF +I H+ Sbjct: 214 DHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAMNNPYIFTQINHF 273 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +TGE LP LP + + H++ L D G R R YL+ A + R Sbjct: 274 FETGEELPDLPFDKKLDIAEDHLKRLVDLKGEMIAVREFRGLAPHYLRGTAGAAKVRGEV 333 Query: 301 NAIEDASEQLEAL 313 + E ++ E Sbjct: 334 SRAESVAQVKEIF 346 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 168/317 (52%), Gaps = 4/317 (1%) Query: 7 QLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 QL+N+ ++ AP+AG++D FR + GA T +EM+S N +++ K+ + + Sbjct: 4 QLKNKQIMLAPLAGVSDVGFRLISERYGADKTFTEMVSVNALYYDNKKTNDLLFISENEK 63 Query: 66 IRTVQIAGSDPKEMADAAR--INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +Q+ GS P+ + + IN ++ I NMGCP K+ + GS L+ P +V+ Sbjct: 64 NCNIQLFGSKPEVIEKVIKDKINYIEKSKEISFNMGCPVAKITKNGEGSQLMANPKLVEE 123 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I + + D + +K R G +H N +I ++A+D GI + +H RT+ +++G A + Sbjct: 124 ICKTLRKSTDKKLNIKFRLGIDDKHINYLDIGKIAQDTGIDYVILHARTKDQMYSGNANW 183 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 D IR +K+ + IPVIANGDI V+D T AD +M+ R A G P++F+EI+ Y+ T Sbjct: 184 DHIRKLKENLQIPVIANGDIFSVEDFINVIDLTKADGVMLARGAMGNPFLFKEIKDYIKT 243 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAI 303 G+ P P+ + +L+ + + RKH+SWY++ + + R N + Sbjct: 244 GKYSKPSPIEIIDQLI-DQYKLELKYKEEKLVVTQMRKHLSWYIKGLENSSKIRDLVNKL 302 Query: 304 EDASEQLEALEAYFENF 320 + E ++ LE Y Sbjct: 303 KTIDEVMDELENYKSTL 319 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 332 bits (853), Expect = 8e-90, Method: Composition-based stats. Identities = 136/310 (43%), Positives = 186/310 (60%), Gaps = 10/310 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 IG +RNR+I APM+G+TD PFR L GAGL V+EM++S V ++ +S R+ Sbjct: 18 FSIGPVPIRNRVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQDTAESWARLKS 77 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQ+AG + MA+AA+I ++GA IIDINMGCPAKKV +GSAL++ PD Sbjct: 78 AGL-KPHMVQLAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDH 136 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ V AVDVPVTLK+R GW N IA+ AE+ GIQ +TIHGRTR + G Sbjct: 137 ALGLIEATVKAVDVPVTLKMRLGWDENSINAPHIARRAEEAGIQLVTIHGRTRMQFYEGR 196 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+IRAV+ +SIP++ANGD+ P A +L +GADA+M+GR QGRPW + + Sbjct: 197 ADWDAIRAVRDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWHAGVLAGH 256 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP--NDQFRR 298 + E+ + H R + DFYG A G R ARKH+ WYL +AP N + Sbjct: 257 RE-------PDRGEIADIALEHYRMMLDFYGEAVGIRHARKHLGWYLDRYAPTINGAEKA 309 Query: 299 TFNAIEDASE 308 +D+ E Sbjct: 310 RIMTSKDSQE 319 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 162/312 (51%), Gaps = 2/312 (0%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 N + APMAGITD FRT ++ A + V+E++S++ ++SD++ M + + Sbjct: 10 NPFVLAPMAGITDHAFRTFIKKLDASVVVTELVSASGIEYKSDRTLKLMSFDESQRPIGI 69 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G +P+ +A AA++ G +D+N GCP KV +K AGSA+L+ P V+ +++ V Sbjct: 70 QLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVSTVK 129 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 A+ +P+T+KIRTGW RN EI +A + G+ + IHGRTRA + G A++D I V Sbjct: 130 AAIKIPLTIKIRTGWDANSRNATEICNIAYNEGVSWVAIHGRTRAQSYTGLADWDFIADV 189 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 K IP++ NGDI P +A L +G D +MIGR P+IF + GE + Sbjct: 190 KANTKIPILGNGDILTPRQANLRLQQSGCDGVMIGRGCLKNPFIFMDALSLWR-GEPIKD 248 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 + + L +E+ RK +W+ ++ QFR+ + E Sbjct: 249 VK-RDYVSLFQGLQKEIVAHCDEHITGIQLRKFAAWFSTGYSGAAQFRKNLFQSKSNDEI 307 Query: 310 LEALEAYFENFA 321 + +F + Sbjct: 308 MALANEFFASIG 319 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 120/317 (37%), Positives = 178/317 (56%), Gaps = 5/317 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG+ +L L+ APMA +T+ FR LC GA LT +EM++ + + ES KS ++ + Sbjct: 6 LKIGRTELSGNLLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLS 65 Query: 61 IDEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +E VQ+ G P ++ AA I E +IID+NMGCPA+ + GSALL P+ Sbjct: 66 SEEDRPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPE 125 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +V SI+ E+ ++D PV+ KIR E EIA+L E G A+T+HGRT A +++G Sbjct: 126 LVYSIILELTESLDTPVSAKIRLLGREE--KTLEIARLIEKAGASAVTVHGRTAAQMYSG 183 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + + IRAVK ++SIPVIANGD+ D A L+ TG D LMIGRAA G P+IF++I+H Sbjct: 184 NSNLEGIRAVKNELSIPVIANGDVKDEESAERTLELTGCDGLMIGRAAMGNPFIFKKIRH 243 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TGE L +++ L + R H W+ + + R Sbjct: 244 YLETGEKLGADKPFRQLEDFNSYISLLEEH--NLLSSINLRMHAHWFTKGLRGSRHVREK 301 Query: 300 FNAIEDASEQLEALEAY 316 N +ED E + ++ Sbjct: 302 INGLEDGKAITELIRSF 318 >UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostridiales RepID=Q14SX5_RUMFL Length = 332 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 171/321 (53%), Gaps = 4/321 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG + APMAG+ DR +R +C GA VSEM+S+ + K+ Sbjct: 5 IKIGNVTIPRTAALAPMAGVADRAYRLMCKRYGAAYVVSEMVSAKGICYSDRKTAELCTV 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP-D 119 +E VQ+ GS+P MA+A +I ++ IIDINMGCP KV AGSAL++ P Sbjct: 65 TEEERPMAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPAL 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 V A D PVT+KIR+GW+ + N E+A+ E G A+ +HGRTR ++G Sbjct: 125 AAAITEAAVKAAGDTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +++ + I+AVK+ VS+PVI NGDITD + TG D +MIGR + G P+IFREI Sbjct: 185 QSDMNVIKAVKEAVSVPVIGNGDITDAESCAEMYGRTGCDLVMIGRGSYGNPFIFREIAA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYG--PAKGYRIARKHVSWYLQEHAPNDQFR 297 ++ E PP L E R++ H+R + ARKH +WY+ + + +FR Sbjct: 245 RMEGSEYQPP-SLEEKMRVMLEHIRLIAGLSEKCEELAMHEARKHAAWYMNGYYGSAKFR 303 Query: 298 RTFNAIEDASEQLEALEAYFE 318 + +E E + E Sbjct: 304 GRCYQLSSYAEAEALAEEFIE 324 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 131/315 (41%), Positives = 187/315 (59%), Gaps = 10/315 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 I +RNR++ APM+G+TD PFR L + GAGL V+EM++S V+ + +S R+ Sbjct: 10 FSIASVAIRNRVVLAPMSGVTDLPFRQLAFRHGAGLVVTEMVASRELVFNAAESWSRLKG 69 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQ+AG DP MA+AA+I +GA IIDINMGCPAKKV AGSAL++ P++ Sbjct: 70 AGLT-PHMVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEI 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +++ V AV +PVT+K+R GW + N ++++ A+D G+QA+T+HGRTR + G Sbjct: 129 ALAMIEATVKAVSIPVTVKMRLGWDSDSINAPDLSRRAQDAGVQAITVHGRTRMQFYEGR 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+I AV+ + IP+IANGDI A+ +L +GADA+M+GRA QGRPW H Sbjct: 189 ADWDAIAAVRDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPW------HA 242 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP--NDQFRR 298 PP E+ + AH R + D YG G R ARKHV WYL+ H + + Sbjct: 243 GVLAGHAPP-SAEEIPAIAVAHYRAMLDHYGAHVGVRHARKHVGWYLERHGVQLDPAEKT 301 Query: 299 TFNAIEDASEQLEAL 313 +D + L Sbjct: 302 GLMTSKDPDHVADRL 316 >UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepID=C0W327_9ACTO Length = 438 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 120/358 (33%), Positives = 171/358 (47%), Gaps = 38/358 (10%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG--------------------------A 34 +RIG + + APMAG+T+ FR LC E G A Sbjct: 27 LRIGPITVGVPVELAPMAGVTNASFRRLCREQGESALPAHARPAAAGPLPTDDGGLLAPA 86 Query: 35 GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQI 93 GL V+EM+++ V +DK+ + +R++Q+ G DP AARI VE A Sbjct: 87 GLYVTEMVTTRALVERNDKTLAMVRTDPTERVRSIQLYGVDPVIAGKAARILVEEDLADH 146 Query: 94 IDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD-----------VPVTLKIRT 142 ID+N GCP KV RK G+AL D++ +IL EVV + VPVT+K+R Sbjct: 147 IDLNFGCPVPKVTRKGGGAALPWKKDLLHAILREVVRGAEEGVRLGRREREVPVTVKMRI 206 Query: 143 GWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 G EH + A+ A+D G+ AL +HGRT + G+A++ +I +K+ IPV+ NGD Sbjct: 207 GVDEEHETYLDAARAAQDAGVAALALHGRTARQHYAGKADWSAIARLKEACRIPVLGNGD 266 Query: 203 ITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAH 262 A ++ TG D +++GR QGRPW+F +I H L L V + AH Sbjct: 267 TWTGSHALEMMRQTGCDGVVVGRGCQGRPWLFADIVHALSGSVERTHPDLDAVIATIRAH 326 Query: 263 VRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 R L G +G R RKH+ WYL+ + Q R + +E LEA Sbjct: 327 ARLLAAELGEDRGVRDLRKHIGWYLKGYPVGGQARGDLMKVSSLAELDAGLEAMRARL 384 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 164/316 (51%), Gaps = 10/316 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG + L+AAP+AG +D PFR LC E GAGL SEM+S + V + + Sbjct: 4 LLIGPLSILPPLVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLAT 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +Q+ G++P+ M +AA I IDINMGCP +KV +K AG+AL++ P++ Sbjct: 64 TAAERPLLMQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPEL 123 Query: 121 VKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +I V A D+PVT+KIR+GW + N + A+L G A+TIH RT + F G Sbjct: 124 AAAITGAVTAAAGDLPVTVKIRSGWNHKQINAPDFARLLVAHGAAAVTIHARTWSDGFTG 183 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ I AVK+ VS+PVI NGDI +A A++ TG D +MIGR A G PW+F Sbjct: 184 RADWAVIAAVKRAVSVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVFT---- 239 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 E PPL + EL + PA R + Y ++ + RR Sbjct: 240 --PGAEQNPPL---AQRLAAARRHLELIRHWRPADNPARVRNQLGRYFKKIPGGARLRRQ 294 Query: 300 FNAIEDASEQLEALEA 315 + +QLE L A Sbjct: 295 IYDHNGSIDQLEQLLA 310 >UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW05_9BACE Length = 307 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 120/306 (39%), Positives = 159/306 (51%), Gaps = 2/306 (0%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAG+TD FRT+C E+GAG T++EM+S+ ++ KS + + QI GSD Sbjct: 1 MAGVTDMAFRTICRELGAGYTITEMVSAKALCYQDKKSIPLLKLGEGEHPCAAQIFGSDE 60 Query: 77 KEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN-AVDV 134 K M +AA I E SGA IIDINMGCP KV GS L++ D + VV A + Sbjct: 61 KCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAGER 120 Query: 135 PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS 194 PVT+K R GW NC E A+ E G+ A+ +HGRTR ++ G A +D IR VKQ VS Sbjct: 121 PVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTRTQMYAGTANWDYIREVKQAVS 180 Query: 195 IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAE 254 IPVIANGD+ D A +L YTGAD MIGR G PW+F++ + L+ E+ P PLAE Sbjct: 181 IPVIANGDVFDGPAAAHILRYTGADMAMIGRGCFGNPWVFQQARAALEGEEIPPLPPLAE 240 Query: 255 VKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALE 314 G ARK +WYL+ A ++ + I + Sbjct: 241 RVDTAVRQFELAAAHKGEHIACLEARKQYAWYLKGVAFAGYYKEQISHISTLEDIYRITA 300 Query: 315 AYFENF 320 + Sbjct: 301 GIKRDL 306 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 104/319 (32%), Positives = 165/319 (51%), Gaps = 2/319 (0%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHI 61 + ++ ++ APMAG+TD FR + +G GL +EM ++ ++ + + ++ Sbjct: 19 VAYIKIEPNIVLAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYL 78 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 E T+QI+G+DP +A+AAR+ + GA IIDIN GCP+ KV GSALL+ + Sbjct: 79 PEERPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKM 138 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + +L V AV +PVTLK+R GW N E Q AE G+ ALT+H RTR + G+A Sbjct: 139 ERLLRAVRAAVQIPVTLKLRAGWDEASLNFIEAGQRAEAAGVAALTLHPRTREQGYKGQA 198 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ + A+K+ VSIPVI +GD+ A L +GAD +MIGR A PWIFR++ Sbjct: 199 DWSRVAALKRAVSIPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIANPWIFRQVADLR 258 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 P P A+ LL ++ + ++ + + ++ R + Sbjct: 259 QGRTPFEPTP-ADKYHLLLEYMAIYAEELPERLALNKIKQLIGQFYIGLPGSNHLRVAVH 317 Query: 302 AIEDASEQLEALEAYFENF 320 + EA+E +F + Sbjct: 318 TSTSLAAAQEAIERFFAPY 336 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 107/322 (33%), Positives = 167/322 (51%), Gaps = 4/322 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESD-KSRLRM 58 +IG ++R + APMAG+TD FR +G GL ++E S++ + K+R + Sbjct: 23 FQIGSVEIRPATVLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARRYL 82 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 + Q+ GSD + +ADAA++ + G ++D+N+GCP+K+V + GS LL+ Sbjct: 83 TFYGNERPISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDL 142 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +K I V AV +P T+K R GW + E+A+LAE+CG+ A+ +H RTR ++ Sbjct: 143 PQIKVIFESVRKAVTIPFTVKFRAGWNEKELVFLELAKLAENCGLNAVAMHARTREQGYS 202 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G+A + I +KQ V IPVI NGDI P A A++ TG DA+MIGR+A PWIFR+I+ Sbjct: 203 GQANWGWIADLKQVVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSAASNPWIFRQIE 262 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 Y TG LP E + + + ++ SW+ R+ Sbjct: 263 QYTATGRY--DLPTNEDRYEMIRMYFRMLIENDTQGAEGKMKQFASWFTHGVPGGGVLRK 320 Query: 299 TFNAIEDASEQLEALEAYFENF 320 + L A++ +FE Sbjct: 321 AVYEAKKRETILVAVDQFFEAL 342 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 323 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 162/313 (51%), Gaps = 2/313 (0%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHID 62 G QL +R + +P+AG T+ PFR + E+G GL ++++++ + S+K+ Sbjct: 22 GALQLESRYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCP 81 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 E VQI GS+P++M DAA++ G IDINMGCP ++ + AG++++ P Sbjct: 82 EDSPFAVQIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTV 141 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 S++ VV AV +PV++K+R GW + ++ E G+ A+ IHGRTR F G Sbjct: 142 SLVQTVVEAVKIPVSVKMRLGWDDSELSAPFFSREFEKVGVVAVAIHGRTREQGFRGVVN 201 Query: 183 YDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 +D IR V + V IPVI NGD+T+ +A +L TG + IGR A PWIFR++ + Sbjct: 202 HDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPWIFRQLVQWE 261 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 TG PP + LL R L + + + RK WYL+ R F Sbjct: 262 QTGTYDPPGNFDDRLELLLRQFRYLLEMTTEKRAISMFRKMGHWYLKSMRVKPAMRHEFQ 321 Query: 302 AIEDASEQLEALE 314 + E +A+ Sbjct: 322 LASNLDEFGQAVR 334 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 167/317 (52%), Gaps = 1/317 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G + N +I APMAGITD P R L GAGL + M+S+ V +K+ + Sbjct: 4 LSLGNIEFDNNIILAPMAGITDLPLRRLAKSGGAGLVYTGMLSARALVRSDEKTEKLLKT 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ QI GS MA+AA+I SGA IID+N+GCP KKV + AG+ LL + Sbjct: 64 TEDERPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV +VDVPVT+KIRTG PEH EI ++A +CGI+ + +H R + +G Sbjct: 124 VSEILESVVKSVDVPVTVKIRTGLLPEHNAATEIIKVAYNCGIKMVAVHARPASQGHSGF 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + A IPVIANG + D A L +MIGR A G IF+ ++ + Sbjct: 184 PDLKLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGALGNYSIFKRLEAF 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +G+ LP E L HV+ ++YG KG+ + +K +Y+++ + R F Sbjct: 244 FSSGKKLPLPSKTEKVEWLKKHVQYSVEYYGEKKGFVVMKKVFHYYVKDLPNAAKIRDIF 303 Query: 301 N-AIEDASEQLEALEAY 316 N I S+ E ++ + Sbjct: 304 NKKIVTLSDFNELIKLF 320 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 134/310 (43%), Positives = 185/310 (59%), Gaps = 7/310 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +R+G ++RNR+ APM+G+TD PFR L + GAG V+EM++S V + +S R+ + Sbjct: 17 LRVGNVEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN 76 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQ+AG + MA+AA+I +GA I+DINMGCPAKKV +GSAL++ PD Sbjct: 77 SG-IDPHIVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDH 135 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 S++ V AV VPVTLK+R GW N IA+ AE+ G+QA+TIHGRTR +NG Sbjct: 136 ALSLIEATVKAVRVPVTLKMRLGWDENSINAPLIARRAEEAGVQAITIHGRTRMQFYNGN 195 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+IRAV+ +SIP+IANGD+ A +L +GADA+M+GR+ QGRPW H Sbjct: 196 ADWDAIRAVRDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRPW------HA 249 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 E+ + H + DFYGP G R ARKHV WYL+ AP+ R Sbjct: 250 GALAGAADEPAATEIAAIFVEHYAMMLDFYGPEIGLRHARKHVGWYLERFAPDLLTERKA 309 Query: 301 NAIEDASEQL 310 + +L Sbjct: 310 EMLTSKDVKL 319 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 114/321 (35%), Positives = 170/321 (52%), Gaps = 4/321 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG + ++ APMA +TD PFRT+C G GLT++E + + + ++ Sbjct: 7 MRIGSLTIDTPVLLAPMAAVTDLPFRTICERFGVGLTITEFLKATALCDGDAEVVDKLTA 66 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQI G + + + AA++ ++ GA +IDINMGCPAK+V G+AL+Q+P++ Sbjct: 67 SLDGVRFGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAALMQWPEL 126 Query: 121 VKSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 ++ VV +V VPVT+K R GW P +RN E A + G Q +T+HGRTR F Sbjct: 127 SAELVRAVVASVPDSVPVTVKHRAGWNPLNRNAPEFACAMVEAGAQMVTVHGRTRTQGFA 186 Query: 179 GEAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 G + + IR V++ V +PV+ NGD+ + ++TG DA+MIGR A G PW+FR Sbjct: 187 GSVDLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALGNPWLFRS 246 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 + +AE R+ C HV L+ G K RK +WY + D F Sbjct: 247 LHALAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIHEVRKACAWYAKGLDGADGF 306 Query: 297 RRTFNAIEDASEQLEALEAYF 317 R+ + E L A A+F Sbjct: 307 RQHVWKLRSPDEVLVAAAAFF 327 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 109/327 (33%), Positives = 162/327 (49%), Gaps = 8/327 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG +L + + AP+AG TD RT+ E GAGL SEM+S+ ++E + + Sbjct: 8 IGDIELPSPFLMAPLAGFTDNAVRTIALEFGAGLVYSEMVSAKGLIYEQKNTEELLDFRG 67 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 G +QI GSDP +A + G I+DINMGCP +K+ + +G+AL++ PD++ Sbjct: 68 ADGFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDIIY 127 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 ++ + V PVT KIR GW + N + A+ E G A+ +HGRT + G Sbjct: 128 DMVKDAVKITQKPVTAKIRIGWDNNNINAVDCAKAIESAGASAVAVHGRTAKQKYEGSVN 187 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF-------R 235 D I +VKQ VSIPVI NGDI +A +D TG D +MIGR A G+PWIF Sbjct: 188 RDVIASVKQSVSIPVIGNGDIKSAKEALEFMDETGCDMVMIGRGAIGKPWIFKSCNMALS 247 Query: 236 EIQHYLDTGELLPPLPLA-EVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPND 294 EI+ E+ P A E+ L + + G + RK +S YL+ + Sbjct: 248 EIRKGKSIDEITEYEPCADEILNTLKKLIDLTVSYKGEKRALLELRKKLSKYLKNTSGVK 307 Query: 295 QFRRTFNAIEDASEQLEALEAYFENFA 321 +R+ E + + Y + + Sbjct: 308 DYRKRLYEAGTKIELMGIIYEYCDKLS 334 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 166/319 (52%), Gaps = 7/319 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHI 61 +G + +I +PMAG+T+ PFR LC + G L V+EM+++ V + K+ Sbjct: 48 LGNVHVGTPVILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKALRLCRFA 107 Query: 62 DEPGIRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 IR++Q+ G +P M AA+I V E A +D+N GCP KV R+ GSAL D+ Sbjct: 108 PSERIRSLQLYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTDL 167 Query: 121 VKSILTEVVNAVD---VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 +++ VV D +PVT KIR G EH E +A++ G +A+T+H RT A + Sbjct: 168 FTDVVSRVVRVCDAAGIPVTAKIRVGIDHEHETFHEAGHIAQEEGCKAVTLHARTTAEYY 227 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G +++ I + +++ +PV NGDI A A+++ TG + IGR QGRPW+F +I Sbjct: 228 GGHSDWSRIGELVEQLDVPVFGNGDIWGAADALAMVEQTGCAGVAIGRGCQGRPWLFADI 287 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY--GPAKGYRIARKHVSWYLQEHAPNDQ 295 +H + L +V +++ H L +FY RKHV+WYL+ Sbjct: 288 KHAFAGSDERTDPTLGQVCQVIMRHATYLTEFYDGDERMAAHDMRKHVAWYLKGFPVGGG 347 Query: 296 FRRTFNAIEDASEQLEALE 314 RR F A E ++ ++ Sbjct: 348 VRRAFMACESLADMQRIVD 366 >UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX2_9PROT Length = 311 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 107/315 (33%), Positives = 172/315 (54%), Gaps = 15/315 (4%) Query: 8 LRNR--LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 L+++ AP+AG TD PFR++ E G +T SEM+++N + ++K++ M + Sbjct: 7 LKSKPLFFLAPLAGYTDLPFRSVVKEFGCDMTFSEMINANAIAFNNEKTKKMMQKSSKET 66 Query: 66 IRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYP--DVVK 122 +QIA ++ + A I E IDIN+GCP K R G LL+ + +K Sbjct: 67 PYFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKEKLK 126 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 I++ ++ V+ K+R G+ + A++ ED GI+ LT+HGRT ++ G A Sbjct: 127 EIVSAIIKTSKKIVSAKMRLGY--NEVVAVDRAKMLEDLGIKFLTVHGRTVKQMYKGNAN 184 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 Y I+ V ++V+IPVIANGDITD KA+ VL+YT A+ + IGR G+PWIF E++ Sbjct: 185 YKEIKKVVKEVNIPVIANGDITDYKKAKEVLEYTEANGVAIGRGVIGKPWIFLEMKQQ-- 242 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 GE+ P + K ++ H + + ++YG G + RKH+ Y + +FR N+ Sbjct: 243 -GEITPY----QKKEVILTHFKAMIEWYGDY-GVILFRKHLHQYSKGIKNASEFRSKINS 296 Query: 303 IEDASEQLEALEAYF 317 E+ E + +E YF Sbjct: 297 TENKDEVINLIEEYF 311 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 177/312 (56%), Gaps = 5/312 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ AP+AG+TD +R + E L +EM+S N +K+ ++ + E +VQ Sbjct: 3 KIYTAPIAGVTDYTYRGILKEFKPDLLFTEMVSINALEVACEKTLKVILRLREGD--SVQ 60 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + G D K+M ++A+ G + IDIN GCP KK+ G+AL++ P++VK++L+EV + Sbjct: 61 LFGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVKAMLSEVRS 120 Query: 131 AVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 A++ +++KIR G+ E +N EIA++A++ G + +TIHGRTR ++ G+A++ I+ Sbjct: 121 ALNDKTDLSIKIRVGY-KESKNPVEIAKIAQETGCKHITIHGRTREQMYTGKADWSIIKE 179 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 VK+ V IPVI NGDI A+ +DY+G D +M+ R G PW+ R+I+ Y + G++L Sbjct: 180 VKESVDIPVIGNGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLIRDIREYFEYGKILH 239 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P+ E + H + + RKH+ WYL+ + + N ++ +E Sbjct: 240 PVTDIEKIDMAIKHTKRTEVEHPERPFIFELRKHLCWYLKGIRNTAEIKDKINHTDNYNE 299 Query: 309 QLEALEAYFENF 320 +E L +N Sbjct: 300 IVELLNRVKDNL 311 >UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia profundicola AmH RepID=B9L781_NAUPA Length = 313 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 165/321 (51%), Gaps = 14/321 (4%) Query: 1 MRIGQYQLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 M I + + AP+AG TD PFR++ + G +T SEM + N ++++K++ M Sbjct: 1 MNISTLKSDSPYFFLAPLAGYTDLPFRSVVKKFGCDMTFSEMTNVNAIAYQNEKTQKMME 60 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQY- 117 VQIA ++ + A I E IDIN+GCP K R G LL+ Sbjct: 61 KSPLENPYFVQIAANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDE 120 Query: 118 -PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 D +K ++ +V PV+ K+R G+ E+ A+L ED GI LTIHGRT + Sbjct: 121 NRDFLKEVVGTIVKTSKKPVSAKMRIGFDKSV--VEDRAKLLEDLGIVFLTIHGRTVKQM 178 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + GEA+YD I+ V IPVIANGDITD KA+ VL+YTGA + IGR A G+PWIF E Sbjct: 179 YKGEADYDEIKKGVNAVKIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKPWIFLE 238 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 ++ + + + K ++ H ++ +YG G + RKH Y + +F Sbjct: 239 MKQQGN-------ITSEQKKEVILEHFNQMVYWYGEY-GVILFRKHAHAYSKGIPKASEF 290 Query: 297 RRTFNAIEDASEQLEALEAYF 317 R N ++D + +E YF Sbjct: 291 RSKMNEVKDPEVARKLIEEYF 311 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 163/311 (52%), Gaps = 8/311 (2%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 RL+ APMAG++D FRTLC E GA LT +EM+S+ + ++K+R + VQ Sbjct: 12 RLLLAPMAGVSDEAFRTLCREQGADLTYTEMVSAKGLSYANEKTRHLLRLAPGEDQVAVQ 71 Query: 71 IAGSDPKEMA-DAARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 + G +P MA AA I E G +DINMGCPA+K+ K GSAL++ P + SI+ Sbjct: 72 LFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPALAASIVRA 131 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 V AV PVT+K R GWA E A+ ED G A+ +HGR L+ G AE+ +I Sbjct: 132 VRAAVSRPVTVKFRRGWAEGDETAPEFARRMEDAGACAIAVHGRYAEQLYRGRAEWGAIA 191 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 VK+ VS+PV+ NGD+ A A+ + TG DA+MI RAA+G PW+F + + L Sbjct: 192 RVKEAVSVPVVGNGDVRSGADAVAITERTGCDAVMIARAAEGNPWLFAQAKAALAGEPEP 251 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN---AIE 304 + E L H R L G + RKH WYL R N ++E Sbjct: 252 DGPTVEERIALARRHARLLSAREG--RNIVRMRKHAMWYLAGLPGAAAARGRINGCVSVE 309 Query: 305 DASEQLEALEA 315 D E + L A Sbjct: 310 DFDEVFDELLA 320 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 111/348 (31%), Positives = 173/348 (49%), Gaps = 31/348 (8%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCY----------------------EMGAGLTV 38 M IG + + APMAG+TD FR + G GL + Sbjct: 23 MDIGGVVVAPATVLAPMAGVTDTVFRRFIRNASLFAEGGAGAANVDREVTNQQSGCGLIM 82 Query: 39 SEMMSSNPQ--VWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDI 96 +E S++ + ES + R + DE Q+ GS+P+ +A+ ARI ++G ++D+ Sbjct: 83 TEFTSADGLSKMRESKRKRYLTFYEDE-HPIAAQLFGSNPETLAEGARIVEDTGFDMVDL 141 Query: 97 NMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQ 156 N+GCPAK+V GS LL+ ++ I V AV +P T+K R GW +H C +A+ Sbjct: 142 NLGCPAKRVVACNGGSGLLRDLPLIAKIFEAVRGAVKIPFTVKFRLGWNDQHIICVPLAR 201 Query: 157 LAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYT 216 LAE+ G+ A+++H RTR ++G+A ++ I VK V IPVI NGD+ P A A++ T Sbjct: 202 LAEESGLNAVSLHARTREQGYSGQARWEHIAEVKDAVRIPVIGNGDVRTPEDACALVAKT 261 Query: 217 GADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAK-- 274 G D +MIGRAA PWIFR+I Y TG P A+ +++ + L D + Sbjct: 262 GCDGVMIGRAAPANPWIFRQIAQYTATGRYDEP-SEADRYQMIRTYFEMLLDEGREDEHA 320 Query: 275 ---GYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFEN 319 ++ SW+ R++ + + L+A+E +FE Sbjct: 321 SRAAEGKMKQFASWFTHGVPGGAGLRKSIYEAKTGPKILDAVERFFET 368 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 108/315 (34%), Positives = 157/315 (49%), Gaps = 2/315 (0%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHID 62 G L R + +P+AG T+ PFR + +E+G GL ++++++ + S+K+ + Sbjct: 42 GPLVLPFRTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKTLRLIATHP 101 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 VQI G + M DAA++ G IDINMGCP KV + AG++L+ + D Sbjct: 102 IDRPFAVQIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADAAT 161 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 ++ VV AV VPVT+K+R GW A+ E G+ A+ IHGRTRA F+G Sbjct: 162 ELVKAVVEAVHVPVTVKMRLGWDASQLTAPRFAREFEQVGVAAVAIHGRTRAQGFSGTVN 221 Query: 183 YDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 D IR V + V IPVIANGDI A A+ D TG A+ IGR A PWIFR++ + Sbjct: 222 RDGIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIFRQLTEWE 281 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 TG+ P + L+ R L ++ G RK WY + R Sbjct: 282 TTGDWAPAGSFNDRLLLMRRQFRYLQEWVGEETAVSAFRKMSHWYTKAMRVGPALRHAVQ 341 Query: 302 AIEDASEQLEALEAY 316 + + E +AL+ Sbjct: 342 SAKTGEEFEQALQEI 356 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 117/328 (35%), Positives = 177/328 (53%), Gaps = 11/328 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG YQ R AP+AG++DRPFR +C MGA +EM+S++ + + ++ + Sbjct: 1 MQIGPYQFPGRYFLAPLAGVSDRPFRAICRRMGASFAYTEMVSAHGLMHGALQTSSYLDR 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQI S+P +A A + V++GA +ID+NM CP KKV AG+A+ + P Sbjct: 61 EPDEDPFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRK 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ + + AV VPVT+KIR GW NC ++A+ AE G A+ +HGRTR+ L++G+ Sbjct: 121 VEEAVRAIRAAVPVPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRTRSQLYSGK 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A ++ +RAVKQ V+IPV+ +GD+ A + + TG DA+++ R A G PWIFRE++ Sbjct: 181 ARWELVRAVKQAVAIPVLGSGDVWTAGDAVRMREETGCDAVLVARGACGNPWIFRELKAI 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYG-----------PAKGYRIARKHVSWYLQE 289 PP E + HVR + R RKH+ WY + Sbjct: 241 EAGRPPPPPPGRDEWVGTVLEHVRLQVEHRARMAPGEPAEASERHAIRELRKHLLWYTRG 300 Query: 290 HAPNDQFRRTFNAIEDASEQLEALEAYF 317 FRR A+ A++ LE +F Sbjct: 301 RRGGVHFRRDAAALVTAADVATLLERHF 328 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 127/315 (40%), Positives = 186/315 (59%), Gaps = 6/315 (1%) Query: 1 MRIGQYQLRNRLIA-APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 + +G++ ++ APMAGI+D P+R+LC G+ T++EM+ + PQ +S+LR+ Sbjct: 2 LTLGRFHYSKPVVLLAPMAGISDLPYRSLCQRFGSHYTIAEMVDARPQFLAMPESQLRLQ 61 Query: 60 HIDEPG-IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 D+ + VQ+ G DP MA+ A++ G +IDINMGCPAKKV ++ AGSALL Sbjct: 62 FDDDARFPKIVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDL 121 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 V+ IL +V V +PVTLK R G+ + E +A++AE+ G+ ALT+HGRTRA FN Sbjct: 122 PQVEKILAQVTRVVSIPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTRAQRFN 181 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A YD I VK + S+P+I NGDIT +A+ ++ G D +MIGRAA G PW+ ++ Sbjct: 182 GTAHYDEIGRVKAQTSLPIIVNGDITTTAQAQDLIQQFGFDGVMIGRAACGNPWLLAHMR 241 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 LD LP + + ++ H+ LH Y +G IARKH+ WYL D +R+ Sbjct: 242 CALDCDFALPAIS---RRAVISEHISALHQLY-QRQGLLIARKHLHWYLAPMPRYDFWRQ 297 Query: 299 TFNAIEDASEQLEAL 313 N D + QL + Sbjct: 298 EINTATDLAAQLAIV 312 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 102/319 (31%), Positives = 167/319 (52%), Gaps = 8/319 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 I + LI APMAG +D P+R +C G ++ +E++S + VW + K+ + + Sbjct: 26 IRNIPVYGELILAPMAGFSDMPYRLICRRFGMSMSYTEVVSVSGIVWNNKKTFKLLDFKE 85 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 E T Q+ G+D ++ +A + + G IIDINMGC + K AG+ +L++P + Sbjct: 86 EERPVTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKIS 145 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 + + ++ VPVT KIR GW + RN E+A++ E+ G + +HGRTR+ F+G A+ Sbjct: 146 KMFNNLTGSLSVPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQYFSGAAD 205 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 +D+I VKQ V IPVIANGD+ + T D +MIGRAA G PWIFR Sbjct: 206 WDAIAEVKQSVKIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGHPWIFRY------ 259 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 + + +E ++ H+ + ++YG A G + RKH Y+ + R Sbjct: 260 --KDRENISGSEKIEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYIVGLPKATELRPYIVR 317 Query: 303 IEDASEQLEALEAYFENFA 321 + A + + + A+ ++ Sbjct: 318 SKSAEDIISYIAAHLNRYS 336 >UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylobacter RepID=A7H1K2_CAMJD Length = 308 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 172/311 (55%), Gaps = 13/311 (4%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + L APMAG +D PFR + + GA +T+SEM+SSN V+ES K+ + + Sbjct: 6 KKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELENPYI 65 Query: 69 VQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQIAG D + + A ++ + ID N GCP KV ++ AGSALL+ ++ K+++ Sbjct: 66 VQIAGGDKEVLKKAVQMLNKMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFKNLVGV 125 Query: 128 VVNAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + +T +K R G+ ++ E++A++ E G+ +++HGRTR L++G+A+Y+SI Sbjct: 126 IKENNKKSLTSVKFRLGFNEKYP--EKMAKICESLGVDFVSVHGRTRKQLYSGKADYESI 183 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + K V IPVIANGDI + A+ V T D LMIGRA+ G PWIF EI+ E Sbjct: 184 ASAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWIFYEIKSGKSVDEK 242 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 L K ++ H E+ Y +G I RKH+ Y + H FR N I++A Sbjct: 243 L-------KKEIILTHFDEMIKHY-KDQGVSIFRKHLHEYSKGHKDASAFRDGVNRIDNA 294 Query: 307 SEQLEALEAYF 317 + + +E +F Sbjct: 295 EKMRKKIEEFF 305 >UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinobacteridae RepID=D2RA64_GARVA Length = 384 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 101/319 (31%), Positives = 161/319 (50%), Gaps = 7/319 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHI 61 +G+ + ++ +PMAGIT+ PFR +C E G L V+EM+++ V + K+ Sbjct: 10 LGKVHIATPVVLSPMAGITNWPFRVICREFGPDGLYVAEMITARALVARNPKALRLCRFA 69 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +R++Q+ G +P + A RI V+ A +D+N GCP KV R+ GSAL D+ Sbjct: 70 PSEKVRSLQLYGVNPSIVEQATRIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKTDL 129 Query: 121 VKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 ++ IL VV+ +PVT K R G H + +A++ G A+T+H RT A + Sbjct: 130 LQEILHRVVSVCEPAGIPVTAKFRVGIDENHETFIQAGHIAQEEGCAAVTLHARTTAEYY 189 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G +++ I + + + IPV NGDI A A+ TG + IGR QGRPW+F +I Sbjct: 190 GGHSDWQRIGELVETLDIPVFGNGDIWGAEDALAMFKETGCAGVAIGRGCQGRPWLFADI 249 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY--GPAKGYRIARKHVSWYLQEHAPNDQ 295 ++ + + LAEV ++ H+ L +FY RKH++WYL+ Sbjct: 250 RNACEGSDNRVNPTLAEVGSVILRHLNLLVEFYDGDERMAVHDLRKHIAWYLKGFPVGGG 309 Query: 296 FRRTFNAIEDASEQLEALE 314 R+ F E + L+ Sbjct: 310 TRKAFMECESIEDVQRNLD 328 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 153/308 (49%), Gaps = 5/308 (1%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAG+ D FR LC E G LT +EM+SS + ++K+R + + +Q+ G +P Sbjct: 1 MAGVNDIVFRRLCLEQGCDLTYTEMISSKALSFANEKTRHLLDLAEGERRVAIQLFGHEP 60 Query: 77 KEMADAARINVESGAQI---IDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD 133 K MA A + IDINMGCPA K+ +K GSAL++ D+ SI+ +V AV Sbjct: 61 KVMAREAAWVEDELGDALALIDINMGCPAHKIVKKGDGSALMRDQDLAASIVRDVARAVS 120 Query: 134 VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 PVT+K R G+ E + ED G A+T+HGRT A ++ G +E++ + VK + Sbjct: 121 CPVTVKFRRGFGAEEETAVDFGLRMEDAGAAAVTVHGRTAAQMYRGPSEWECVARVKAAL 180 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLA 253 S+PVI NGDI A ++ TG D +MI R AQG PWIF +++ LD P Sbjct: 181 SVPVIGNGDIVSGASAADMVRATGCDGVMIARGAQGNPWIFADVRRVLDGMPPAPDPTRQ 240 Query: 254 EVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEAL 313 + + H+ L G RKHV WYL + R NA + L Sbjct: 241 DRVEMARRHIHLLSSRLGNT--VVYMRKHVMWYLHGVPGASRARAALNACVTVDDFDRVL 298 Query: 314 EAYFENFA 321 + + A Sbjct: 299 DELLADAA 306 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 95/312 (30%), Positives = 166/312 (53%), Gaps = 5/312 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ AP+AG+TD +R + E L +EM+SS+ +DK+ +++ + VQ Sbjct: 3 KIFIAPIAGVTDYTYRGILEEFQPDLLFTEMVSSDALAALNDKTISQILRLRSG--NGVQ 60 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + G D ++M +A+ + G + IDIN GCP K+V GSALL+ P+ +K IL + Sbjct: 61 LFGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKIKEILFTLRE 120 Query: 131 AV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 + +++KIR G+ N +IA++AE+ G +T+HGRTRA L+ G A++ I+ Sbjct: 121 QLEESTKLSIKIRVGYDR-PENYLQIAKIAEEAGCSHITVHGRTRAQLYTGLADWSLIKE 179 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 +K+ V+IPVI NGDI A+ ++ +G D +M+ R G PW+ R+I+ L GE+ Sbjct: 180 IKEHVTIPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWLIRDIREMLQYGEVKT 239 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 + + + H+ + + + RKH+ WYL+ + +++ N D Sbjct: 240 KVSTEDKIDMAIHHILKTEEDNPQREFVFDVRKHICWYLKGIPHSAEYKNRINQSTDYKA 299 Query: 309 QLEALEAYFENF 320 ++ L+ E Sbjct: 300 VVQLLQELKEKI 311 >UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacterium RepID=B8DSX5_BIFA0 Length = 417 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 109/322 (33%), Positives = 164/322 (50%), Gaps = 7/322 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMV 59 +R+G + ++ +PMAG+T+ PFR LC E G L V+EM+++ V + K+ Sbjct: 41 IRLGDVMVNTPVMLSPMAGVTNWPFRVLCEEYGPDGLYVAEMVTARALVERNPKALRLCR 100 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYP 118 IR++Q+ G +P M AAR V++G +D+N GCP KV R+ GSAL Sbjct: 101 FAPSERIRSLQLYGVNPSIMEQAARFLVDNGMMDHLDLNFGCPVPKVTRRGGGSALPWKT 160 Query: 119 DVVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 D+ I+ VV ++PVT KIR G EH E ++A++ G A+T+H RT A Sbjct: 161 DLFTEIVQRVVAVCEPANIPVTAKIRVGLDHEHETFLEAGRIAQEEGCSAVTLHARTTAE 220 Query: 176 LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 + G +++ I + + IPV NGDI A A+++ TG + IGR QGRPW+F Sbjct: 221 YYGGHSDWCRIGELVSTLDIPVFGNGDIWGAEDAIAMVNETGCAGVAIGRGCQGRPWLFG 280 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY--GPAKGYRIARKHVSWYLQEHAPN 293 I + ++ L EV R++ H L +FY RKHV+WYL+ Sbjct: 281 NIGNAFAGSDVRINPTLGEVGRIIMRHAELLTEFYDGDERMAVHDLRKHVAWYLKGFPVG 340 Query: 294 DQFRRTFNAIEDASEQLEALEA 315 RR F E + E ++A Sbjct: 341 GSTRRAFMECESLKDVREQVDA 362 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 314 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 102/313 (32%), Positives = 168/313 (53%), Gaps = 5/313 (1%) Query: 9 RNRLI-AAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 NRL+ APM G+T+ FR+LC GA + +E +S++ + DK + ++ I+ Sbjct: 16 SNRLVFLAPMEGVTNVYFRSLCKSFGADMVYTEFISADALIRHVDKIQGKLKIINSEHPI 75 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQI G D M +AARI E +D+N GCP KK+ R+ AG+ +L+ P + I + Sbjct: 76 AVQIYGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEITQQ 135 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 VV++V++P+T+K R GW + ++A+ +D GI LTIHGRT + +++G+A+++ I Sbjct: 136 VVHSVNIPITVKTRLGWDENSKIIVDLAERLQDTGIALLTIHGRTGSQMYSGKADWNLIG 195 Query: 188 AVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 AVK IP+ NGDI P + + G DA+MIGRA+ G PWIF+E+++YL + Sbjct: 196 AVKNNPRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWIFQEVKYYLKYND 255 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHV--SWYLQEHAPNDQFRRTFNAI 303 L P +L + + G +G +R+H+ S ++ + + Sbjct: 256 LAPKKSFEYYLSVLKQQILQSVSQLGERQGILNSRRHIVASPLFKKMSNFKLTKIAMLQA 315 Query: 304 EDASEQLEALEAY 316 S E ++ Sbjct: 316 ITVSSLFEIMDNI 328 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 173/320 (54%), Gaps = 8/320 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G ++ + + APM+G TD PFR GA + ++EM++ + R+ Sbjct: 2 ISVGDVEINDAVFLAPMSGATDAPFRRQASRFGAPVVITEMIAGSELATGRQDMVWRITK 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+AG DPK M +AARI+ +GA IIDINMGCP+++V +G+AL++ D+ Sbjct: 62 PENTFPFVVQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDLDL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + ++ +PV++K+R GW + N +A++ E+ ++ +T+HGRTR + G+ Sbjct: 122 ARELIIAAREGGGLPVSVKMRLGWDDDTLNAPALAKICEEEHVKLITVHGRTRCQFYTGK 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+++ ++ VK ++P+I NGDI A+ + + AD +MIGRAA GRPW+ +I Sbjct: 182 ADWNKVKEVKLASNLPLIVNGDIDSSKTAKQAILLSQADGVMIGRAALGRPWLLGKIASD 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVS---WYLQEHAPND--- 294 L + P +E LC V + YG G R+ RKH++ Y +E N Sbjct: 242 LANRPYIEP-TWSEKLSSLCEQVSDSVLLYGDRLGVRVFRKHLAAFIDYSKEIRLNTEDR 300 Query: 295 -QFRRTFNAIEDASEQLEAL 313 + R F I ++ + A+ Sbjct: 301 NELRGRFCRISSENDVISAI 320 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 132/309 (42%), Positives = 182/309 (58%), Gaps = 10/309 (3%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 +RNR++ APM+G+TD PFR L + GAGL V+EM++S V ++ +S R+ Sbjct: 2 SVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF-RP 60 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQ+AG + MA+AA+I + GA IIDINMGCPAKKV +GSAL++ PD ++ Sbjct: 61 HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIE 120 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 V AVD+PVTLK+R GW N +IA+ AE GIQ +TIHGRTR + G A++D+I Sbjct: 121 ATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQFYEGRADWDAI 180 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 RAV++ +S+P+IANGD+ A+ +L +GADA+MIGR QGRPW + G Sbjct: 181 RAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPW-----HAGVLAGAA 235 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP--NDQFRRTFNAIE 304 P ++ + H R + DFYG A R ARKH+ WYL+ AP + Sbjct: 236 EPR--REDIADIAVEHYRMMLDFYGEAVAIRHARKHLGWYLERFAPALAGTEKAGIMTSR 293 Query: 305 DASEQLEAL 313 D E L Sbjct: 294 DPREVAARL 302 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 100/315 (31%), Positives = 159/315 (50%), Gaps = 9/315 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 IG Q + + AP+AG TD FR LC++ GA TVSEM+S + + ++ + Sbjct: 2 FTIGPNQFSSPFVLAPLAGYTDLSFRLLCHQFGADYTVSEMISCHGLFYNQQRTLEMLAS 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + E + Q+ G++P MA A I + +IDINMGCP +KV +K AG+AL+ P++ Sbjct: 62 LPEERPVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPEL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ VV+ D+PVT+K R G + N E + E G A+ +HGRTRA F+G Sbjct: 122 AYDVIRSVVDNTDIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVHGRTRAQAFSGV 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+ I+ VK+ +SIPVI NGDI ++ TG D +M+GR A G PW+F+ Sbjct: 182 ADRGIIKEVKEALSIPVIGNGDILSYQDGLDMMAETGCDGVMVGRGALGNPWVFQ----- 236 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +G+ P + + H+ + F + + + H+S Y ++ + + R Sbjct: 237 -ASGK---PANIHGLAAGALQHLLLMERFNPVERVLGLIKNHMSKYFKDMPGSSRLRTAI 292 Query: 301 NAIEDASEQLEALEA 315 E + Sbjct: 293 FTASSFLELKGMITE 307 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 110/340 (32%), Positives = 171/340 (50%), Gaps = 25/340 (7%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEM--GAGLTVSEMMSSNPQVWESDKSRLRM 58 +RIG + + ++ APMAGIT+ PFRTLC E G GL VSEM+++ V ++K+ + Sbjct: 16 LRIGPHTVAPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLI 75 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQY 117 R++Q+ G DP + A R+ E G A ID+N GCP KV RK GSAL Sbjct: 76 HFDATETPRSIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYK 135 Query: 118 PDVVKSILT-EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 ++++I+ V A D+PVT+K+R G +H + ++A + G+ A+ +HGRT A Sbjct: 136 RHLLRAIVREAVTGAGDLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTAQH 195 Query: 177 FNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 + G A++D+I +K+ V IPV+ NGDI A ++ TG D +++GR GRPW+F Sbjct: 196 YGGTADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRPWLFA 255 Query: 236 EIQHYLDTG-ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA--------------- 279 ++ + + L EV ++ H L ++ R A Sbjct: 256 DLVAAFEGRTDSFVRPTLREVADVMVRHATLLGEWIENGGTARRATVEGGGGRREGEARG 315 Query: 280 ----RKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEA 315 RKHV+WYL+ A + R+ L+ Sbjct: 316 VIDFRKHVAWYLKGFAVGSEMRKRLAVTSSLEALRAGLDE 355 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 165/314 (52%), Gaps = 1/314 (0%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R ++ APM +TD FR + E+GA L V+E ++ + +R ++ D Sbjct: 14 RRPVVLAPMEDVTDAVFRRIGRELGAELCVTEFVNVEGLLRGCKTARRKLALADGDQPTA 73 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +QI G++P+ +A+AAR+ E+G +DIN GC K+ + AG+ L+ P+ + ++ V Sbjct: 74 IQIYGANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDPEAMVAMARLV 133 Query: 129 VNAVDVPVTLKIRTGWAPE-HRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 +V +PVT+K R GW PE H ++A+ ED G+ ALTIH RT +G A++ Sbjct: 134 TRSVALPVTVKTRIGWGPESHMPIVDLARRLEDAGVAALTIHCRTAQMGHSGAADWGWAA 193 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 ++ VSIPV+ NGDI A L TG +M+GRAA PWIFRE + LD G L Sbjct: 194 RAREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRAAIDHPWIFREARALLDDGVHL 253 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 PP E L AH+ + G G R+ R+H++ YL+ RR + S Sbjct: 254 PPPTAEERLALCRAHLIANTEARGEPHGVRVTRRHLTGYLRGLPGASALRRELLFCDSLS 313 Query: 308 EQLEALEAYFENFA 321 L+ L++ + A Sbjct: 314 GCLDILDSAAQRLA 327 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 126/290 (43%), Positives = 175/290 (60%), Gaps = 5/290 (1%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWES----DKSRLRMVHIDEPGIR 67 ++ APMAG+TD PFR L ++ G L+ +EM++S + E D G Sbjct: 14 IMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVDPRLGGGAEAGRAGPF 73 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQ+AG DP MA+AAR +GA++IDINMGCP +KV L GSAL++ + IL Sbjct: 74 AVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARILEA 133 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 VV AV +PV+LK+R GW RN E+A+LAE GI LT+HGRTRA +++G A++ +I Sbjct: 134 VVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGRADWPAIG 193 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG-EL 246 VK+ VS+PVIANGD+T+ +AR +L TGAD +MIGRAA G PW+ I + G Sbjct: 194 LVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAPWLPGAIARAIAAGTRE 253 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 PP LAE ++ AH+ L +G +G + +RKH+ WY + F Sbjct: 254 TPPPALAERAAVMAAHLEGLLACHGLERGLKTSRKHMGWYARTMPQGADF 303 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 163/323 (50%), Gaps = 5/323 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMV 59 + IG L++ ++ AP+AG +D P+R + G L EM+ + ++ + Sbjct: 5 IHIGNILLKSPIVYAPLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSPSRTLKLLE 64 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + + Q+ GS P+ +AA++ G +ID+N GCP ++ + +GS LL+ P+ Sbjct: 65 YSESMRPIGGQLCGSKPEMAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKTPE 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ +L +++ +V +PVT+KIR+GW + N EE ++ ++ G A+ +HGRTRA + G Sbjct: 125 LIGKVLEKIIGSVSIPVTVKIRSGWDGNNINVEETVRIIKEAGASAVFVHGRTRAQGYVG 184 Query: 180 EAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 + + I K PV NGD+ P A+ +LD TG D +++ R G PWI R+I Sbjct: 185 PSNLEYIARAKAAAGKDFPVFGNGDVFSPEAAKLMLDSTGCDGVLVARGTMGAPWIARQI 244 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY-GPAKGYRIARKHVSWYLQEHAPNDQF 296 + YL TG +P + K+ H+ + ++Y AK RK YL A Sbjct: 245 EDYLTTGTYQ-KMPFSTRKQAFLQHLHWVEEYYQSEAKFLCETRKLCGHYLISAAKVRFL 303 Query: 297 RRTFNAIEDASEQLEALEAYFEN 319 R + + +EAY E+ Sbjct: 304 RSALSKATSVQAVYQLIEAYEES 326 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 162/311 (52%), Gaps = 7/311 (2%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH---IDEPGI 66 N+ I APMAG+T P+R EMG + +SEM+S+ ++S + M + + Sbjct: 16 NKAILAPMAGVTTLPYRLFMREMGCKIFISEMVSAKGLYYKSKNTFPLMETNELEHKDSV 75 Query: 67 RTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 +QI GS+P+ M + ++ IDINMGCP KK+ GSALL+ D ++ Sbjct: 76 TGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLDKANKVV 135 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 EV +A PV++K+R G+ E+I + ED G +T+HGRTR +F GE +YD Sbjct: 136 REVKSASSKPVSVKVRLGFNEN--IIEDIIKAIEDGGADMITVHGRTREQVFTGEVDYDG 193 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I+ K+ S+P+IANGD+ + LKA+ +DYTGAD +MIGR A P+IF + + +G+ Sbjct: 194 IKKAKETASVPLIANGDLDNYLKAKEKMDYTGADGVMIGRGANYDPFIFSQFNECI-SGK 252 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 + L + H + K RK++ WY++ + + R + N + + Sbjct: 253 KVSEYSLRDKIDAARKHFEIHLKYSKDKKKVIEFRKYLYWYIKGIKNSAKIRNSINNVNE 312 Query: 306 ASEQLEALEAY 316 + E Sbjct: 313 IDQVYEIFNRI 323 >UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacteria RepID=A7I0T0_CAMHC Length = 310 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 114/316 (36%), Positives = 170/316 (53%), Gaps = 12/316 (3%) Query: 6 YQLRN-RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + +N L AP+AG +D P R++ G TVSEM+S+N V+ S+KS + + Sbjct: 2 FSFKNHPLFLAPLAGFSDLPLRSVVKRFGCDATVSEMISANALVFCSEKSLKMIKKSENE 61 Query: 65 GIRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQIAGSDPK + A I + G ID+N GCP KV R+ AGSALLQ D++ Sbjct: 62 TPYFVQIAGSDPKIIKQAVEILNKIDGIDGIDLNCGCPVPKVVRQNAGSALLQNLDLLSK 121 Query: 124 ILTEVVNAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 ++ + + T K+R G+ + +N IA ++ G + +H RTRA ++ + + Sbjct: 122 LIEIIKKTSNKKYTSAKVRLGF--DTKNPVNIALAVQNAGADFIAMHARTRAGGYSAKPD 179 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 Y++I A K V IP+IANG+I A +L+ T ADALMIGRA G PW+F EI++ Sbjct: 180 YEAIAAAKSAVKIPLIANGNINS-QNANQILNLTKADALMIGRATIGNPWVFYEIKNQ-- 236 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 + K ++ AH E+ FYG G I RKH+ Y + +A FR N Sbjct: 237 ---KTVAVDEKIKKEIILAHFDEMIKFYGDH-GAVIFRKHLHEYSKGYADATNFRCEINT 292 Query: 303 IEDASEQLEALEAYFE 318 I +A + + ++ +FE Sbjct: 293 ITNAEKMRDKIKQFFE 308 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 306 bits (784), Expect = 9e-82, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 154/309 (49%), Gaps = 6/309 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 L APMAG+TD FRT+C E+G + V+E +S+ + +++R + +Q Sbjct: 18 PLFLAPMAGVTDPIFRTICKELGVDVMVTEFVSAEGILQAWERNRRYTKIENAHRPIGIQ 77 Query: 71 IAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 + G+D M +AARI ++ IDIN GCP KV K GS+LL+ ++ S+ VV Sbjct: 78 LFGADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLLKDLPLLASVAGGVV 137 Query: 130 NAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 AV +PVT KIR GW + + +L E+ GI +TIHGRTR+ ++G A +D I Sbjct: 138 KAVGERIPVTAKIRIGWDFQSLCAMDACRLLENEGISMITIHGRTRSQQYSGTANWDIID 197 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 + +S+PVI NGDI+ P V + T +MIGRAA PWIF + ++YL G + Sbjct: 198 ECARAMSVPVIGNGDISTPQAVAYVKENTAVSGVMIGRAAMENPWIFGDAKYYLLHGTMP 257 Query: 248 PPLPLAEVKRLLCAHVRELHD---FYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 P E L+ H R + + R R + Y + + R + Sbjct: 258 PARDPQEKAALILRHARMALESRHYGDELHTMRHMRSRILAYTKGFPGAKEMRSRLVRVS 317 Query: 305 DASEQLEAL 313 E + L Sbjct: 318 SMPELEDLL 326 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 89/309 (28%), Positives = 152/309 (49%), Gaps = 3/309 (0%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 + APMAG TDR FR L YE G V+EM+S+ + K+ + VQ Sbjct: 3 KFFMAPMAGYTDRAFRQLIYENGLDHAVTEMVSARALCFNDRKTLELLKKFPGEKNTGVQ 62 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I SD + ++ A+ + + IDINMGCPA K+ + GSAL++ P++V ++ V Sbjct: 63 IFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVYELVKGAVK 122 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 + +++K R + ++ +I + A+D G A+T+H R+R + ++++ + +K Sbjct: 123 NSNKKISIKTRKSF--DNTLSLDIIRAAQDAGAFAVTVHPRSREEYYKNKSDWQYLIKIK 180 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 + ++IP+I NGDI A + D + IGR A P IF +I+ L GE L Sbjct: 181 KFLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQIKKAL-KGEKYEEL 239 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQL 310 + +L H+ ++ G + RK ++YL+ + + R N D + + Sbjct: 240 NFNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKEIRNKLNVENDYTNVV 299 Query: 311 EALEAYFEN 319 + LE Y E Sbjct: 300 KILEEYREQ 308 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 6/323 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG+ L L+ APMAG+TD +R L + GA + +EM+S V + ++ L + Sbjct: 13 LRIGKLLLDLPLVLAPMAGVTDSAYRALMADFGAAMVTTEMVSIQGLVR-NQRATLDLCR 71 Query: 61 IDEPG--IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 P VQ+ G DP MA+AAR+ + GA +IDIN GCP +KV R+ AG+ LL+ P Sbjct: 72 QQHPVGVPLAVQVFGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDP 131 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 D + +++ V AV VPVT+KIR GW +A+ G+ A+T+HGRT A +++ Sbjct: 132 DRLAAMVEAVKRAVSVPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRTAAQMYS 191 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A++ I VK V++PVI NGD+T P A ++ TG D +MIGRA+ G PW+F I Sbjct: 192 GRADWSRIAEVKAAVAVPVIGNGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVIS 251 Query: 239 HYLDTGELLPPLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 G P + R AH+ A G+ +K + WY + + R Sbjct: 252 RRWGRGARQGDCPGWNDFLRTAEAHLESFRTMRPRADGH--LKKLLIWYSKGCPDSAGLR 309 Query: 298 RTFNAIEDASEQLEALEAYFENF 320 + L A ++ Sbjct: 310 CRIAGPDGIESMLAAFRSWVHEL 332 >UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F94 Length = 338 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 100/314 (31%), Positives = 156/314 (49%), Gaps = 6/314 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 + APMAG+TD +R L E GA TV+E +++ ++ S L++ Q Sbjct: 13 PIFLAPMAGVTDLAYRLLAKECGADFTVTEFTAASGLTRKNTNSWLKVETDPREKPFIPQ 72 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I G D EMA + + + +IDIN GCPA KV R AG+ALL+ PD V S++ + Sbjct: 73 IFGGDISEMAKTVGMLEDR-SDVIDINFGCPAPKVCRNDAGAALLRDPDKVVSMVRRCIE 131 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 + +VP+T+K+R G EI++ D G+ + +HGRT ++G A++D I+ + Sbjct: 132 STNVPITVKMRLGTGSGPNTALEISKRLADEGVMRICVHGRTLRQRYSGIADWDQIKEIS 191 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP- 249 V IPVIANGD+ D A L+ T A LMIGR A GRP IF EI+H + P Sbjct: 192 NSVDIPVIANGDVVDTKSAELCLEATNAGGLMIGRGAIGRPTIFHEIKHGMGWSHKTAPW 251 Query: 250 ---LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P ++ + YG + G + ++H + + R ++I+D Sbjct: 252 GKGGPSRARSWCWDRYLELSQEVYGDS-GSKNLKRHAISFTKGLEGASAMRVRLHSIQDK 310 Query: 307 SEQLEALEAYFENF 320 ++ + Y + Sbjct: 311 TQLGTEVSNYLHDL 324 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 161/315 (51%), Gaps = 3/315 (0%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 QL +R++ +P+AG+TD+ FR L L +EM+++ ++ + +E G Sbjct: 34 QLHSRVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELGHGYGKMDDLKAEE-G 92 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ P MA AAR ++GA +IDINMGCP +K+ +K GS L++ P++ IL Sbjct: 93 PIAVQLFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQIL 152 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 VV+AV +PVT+K R GW + + ++ G Q LT+HGRTR F G+A +++ Sbjct: 153 EAVVDAVSIPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLHGRTREQGFKGQANWNA 212 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I VKQ ++IPVIANGDI P A L+ TGAD +M+GR G PW+ +I+ Sbjct: 213 IAEVKQALTIPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLVGQIEAAFMNRP 272 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 + L + +L G G IARKH+SW Q R + Sbjct: 273 IPATPDSGARLHLAKEQLHDLVSSRGSH-GLLIARKHMSWTCTGFPGAPQLRHSLMRATT 331 Query: 306 ASEQLEALEAYFENF 320 + + ++ + Sbjct: 332 PDDAYQLIDNAINSL 346 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 302 bits (775), Expect = 8e-81, Method: Composition-based stats. Identities = 106/327 (32%), Positives = 160/327 (48%), Gaps = 12/327 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-------AGLTVSEMMSSNPQVWESDK 53 +RIG +L + ++ APMAG+T+ FR LC ++ +GL V EM+++ + Sbjct: 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 Query: 54 SRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGS 112 + + R++Q+ DP AAR+ G A ID+N GCP KV ++ G+ Sbjct: 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 Query: 113 ALLQYPDVVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIH 169 AL + I+ V A D+PVT+K R G H + ++AE G A+ +H Sbjct: 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 Query: 170 GRTRACLFNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 RT A ++G A+++ I +KQ V IPV+ NGDI D A A++ TG D ++IGR Sbjct: 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 Query: 229 GRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 GRPW+F E+ P L EV ++ H L +G KG R RKH++WYL Sbjct: 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 Query: 289 EHAPNDQFRRTFNAIEDASEQLEALEA 315 RR ++ E L+ Sbjct: 313 GFPAGSALRRALAMVKTFDELDCLLDR 339 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 166/316 (52%), Gaps = 6/316 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MR+G+ L L+ AP+A +T+ FR +C + GA L +EM+SS+ V+ + S +R + Sbjct: 1 MRLGRVDLPGNLLLAPLAEVTNLAFRLMCKKYGASLCFTEMISSDAVVYGNASSAMRGIT 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPD 119 DE +Q+ G+ P+ + +AA + + +IDIN+GCPA + GSALL+ P+ Sbjct: 61 CDEERPFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +V I + + VD PVT KIR ++A ED G+ A+T+HGRT ++G Sbjct: 121 LVSDIFSTLCEGVDTPVTAKIRV--LESRAATLDMAHRLEDAGVCAITVHGRTCEQGYSG 178 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ + +K+++SIPVI NGDI D + A VL+YTG D LMIGRAA G P +F I Sbjct: 179 TADHSYAKLIKEELSIPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGDPHVFHRISR 238 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YLD GE++ ++ + + HV W+ + + + R Sbjct: 239 YLDDGEVI---GCGCEQKRDDLLEYLDLLEKFDLSSHINLKAHVQWFTRGLKGSRRMRSD 295 Query: 300 FNAIEDASEQLEALEA 315 + +E ++ Sbjct: 296 IGYADSRDSIVEFVKN 311 >UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Planctomycetaceae RepID=D2R6Z1_9PLAN Length = 345 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 156/324 (48%), Gaps = 9/324 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHI 61 IGQ ++ ++ APMAG T+ +R + E G AGL +EM++++ W + + Sbjct: 6 IGQVKVDPPILQAPMAGYTNYAYRQMVREFGGAGLQATEMVNASGFAWLHEHEAEHPDRL 65 Query: 62 ----DEPGIRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVN-RKLAGSALL 115 +E VQ+ +DP +A R+ E ++DIN GCP K V + +GS LL Sbjct: 66 WGVKEEARPLAVQMWDNDPATLAKVGERLANELHVSVVDINFGCPVKDVTEKAHSGSYLL 125 Query: 116 QYPDVVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA 174 ++PD + I+ VV A PVT KIR G + + N EIA++ E G ALT+HGRT A Sbjct: 126 KFPDRIAQIVERVVKACAPTPVTAKIRLGCSRDAINAIEIAKVVESAGAAALTVHGRTAA 185 Query: 175 CLFNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 F G A+++ I +K + IP+I NGD+ P K G D +MI RA+ GRPW+ Sbjct: 186 DFFRGTADWNRIAEIKPHLKKIPLIGNGDLDSPEKVIEAFRRYGVDGVMIARASMGRPWL 245 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN 293 FR+ L + P E + + H +G KG + RK Y Sbjct: 246 FRQAAAALRGEPVPPDPTAEEQRLTMLRHYELTCARFGEQKGTLLMRKFACNYATGRPGA 305 Query: 294 DQFRRTFNAIEDASEQLEALEAYF 317 FR + + +E YF Sbjct: 306 RTFRAMVANVFTREDFFNVVERYF 329 >UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propionibacterium acnes RepID=Q6A959_PROAC Length = 411 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 108/322 (33%), Positives = 163/322 (50%), Gaps = 6/322 (1%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE 63 G + ++ APMAG+T+ FR LC E GAGL V EM++S V+ K+ + + Sbjct: 44 GTVSVDTPVVLAPMAGVTNAAFRQLCAEQGAGLYVCEMITSRGLVYGDHKTHGMLAFAEC 103 Query: 64 PGIRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 +R+VQ+ G DP + +A I E G +D+N GCP KV RK G L D Sbjct: 104 EDVRSVQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKLDRFA 163 Query: 123 SILTEVV---NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++++ V +A VPVT+K R G PEH + A+ A D G A+ +H RT A + G Sbjct: 164 AVVSAAVQAGDAHGVPVTVKTRIGIDPEHITYIDSARAAVDSGAAAVCLHARTVAEAYAG 223 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + +D+I + + V +PVI NGDI + A A++ TG + +GR GRPW+FR++ Sbjct: 224 HSHWDAIGELVKTVDVPVIGNGDIWEASDAMAMVGQTGCAGVEVGRGCLGRPWLFRDLAD 283 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + L EV ++ H L + G G RKH++WYL+ + R Sbjct: 284 AFAGRDTTTLPTLGEVCAMIRRHAELLVKYQG-MHGLVDMRKHMAWYLKGFPVGGETRHV 342 Query: 300 FNAIEDASEQLEALEAYFENFA 321 I E L++L A ++ A Sbjct: 343 LGQISSFDE-LDSLLATLDHDA 363 >UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=Rhodobacterales RepID=A3VWV8_9RHOB Length = 339 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 127/317 (40%), Positives = 173/317 (54%), Gaps = 4/317 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I Q+ + APMAGITD PFRT+ GAGL VSEM++S V +R + Sbjct: 2 LKIADRQIATPVFLAPMAGITDLPFRTVVAGFGAGLVVSEMVASQEMVQAKPSARGKAEL 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA----LLQ 116 +VQ+AG DP MA+AAR+ + GA+IIDINMGCPAKKV A L++ Sbjct: 62 GFGIENTSVQLAGCDPHWMAEAARVVADHGARIIDINMGCPAKKVVSAAGAGASGSALMR 121 Query: 117 YPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 D ++ VV AVDVPVTLK R GW N E+A+ AE G+ +T+HGRTR Sbjct: 122 DLDHALRLIEAVVGAVDVPVTLKTRLGWDEGCSNAAELAKRAEAAGVAMITVHGRTRCQF 181 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + G A++ I + Q V+IPVIANGDI A + + A +MIGR A+GRPW+ E Sbjct: 182 YRGAADWAMISDIAQAVNIPVIANGDIVGVASACRAMAQSNAAGVMIGRGARGRPWLLAE 241 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 + + G A + L+ H + FYG G R+ARKH+ WY++ + + Sbjct: 242 VAAAMGHGTAPEVPRGAVLADLVAGHYEAMLGFYGRDLGLRVARKHLGWYMEAAGSDPEM 301 Query: 297 RRTFNAIEDASEQLEAL 313 RR + AS L L Sbjct: 302 RRAVLTADQASVVLGLL 318 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 96/318 (30%), Positives = 154/318 (48%), Gaps = 6/318 (1%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 I + +R APMAG TD FR L + GAGL V+E++S+ + K+ M H + Sbjct: 7 IEGVNIPSRFFLAPMAGYTDYVFRRLSRKFGAGLLVTELVSAAALARQVKKTYRYMEHKE 66 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 + ++Q+ G++ + A I SG IDINMGCP KKV + G+ LL+ D + Sbjct: 67 DEYPISLQLFGANEDDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTDKMI 126 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 S+L V + +PV++KIR G E A ++ G LT+HGR + ++ G A+ Sbjct: 127 SVLNAVKSVSPLPVSVKIRLGLKRGEGGEIERALAMKENGACFLTLHGRYASDMYRGTAD 186 Query: 183 YDSIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +++I +K+ + +I NGDI A D + D +M+GR A G PWIF E+ Sbjct: 187 WEAIAKIKEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAIGNPWIFTELNTI 246 Query: 241 L-DTGELLPPLPLAE-VKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 D E + + +K ++ H+ + YG G RK + YL + ++ Sbjct: 247 FEDNDEYNNKIDEKDNLKNIIKEHINGCCELYGEVSGIHFMRKFIMKYLTGYRMENKI-- 304 Query: 299 TFNAIEDASEQLEALEAY 316 E+ E + L+ Sbjct: 305 ELMKCENKEELFKILDNI 322 >UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EC62_9ACTN Length = 347 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 103/313 (32%), Positives = 150/313 (47%), Gaps = 6/313 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 + APMAG+TD +R +C GA L SEM+S + S+K+ ++ DE VQ Sbjct: 18 PFLMAPMAGVTDPAYRIMCRRRGANLAYSEMVSVAGLAYASNKTWRLVLPADEEQQICVQ 77 Query: 71 IAGSDPKEMADAARINVESGAQ---IIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 + GS P++ A A E +IDINM CPA+KV K GSAL++ PD+ + I+ Sbjct: 78 LFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLAEKIVEA 137 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 V A VPVT+KIR G+ E RN AQ+ E G A+ +HGR L+ G+A++ + Sbjct: 138 AVGAAHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHGRCATQLYTGQADWSVVD 197 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 V V IPVI +GD+ A L +GA A+ I R G PW+F + + G + Sbjct: 198 EVADAVEIPVIGSGDVFSAEDAAEHLQGSGASAVFIARGIYGNPWVFGDARALALDGTPV 257 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 P E L H+ H+ AR + SWYL+ +R Sbjct: 258 PSRSSVERLEALREHLTLTHELL---PLMSRARTYASWYLKGMPHAAAWRAQVVRCSTYE 314 Query: 308 EQLEALEAYFENF 320 E + ++ + Sbjct: 315 EFMALVDDIERDV 327 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 126/306 (41%), Positives = 170/306 (55%), Gaps = 3/306 (0%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + AP++G+TD R + GA VSEM+++ S ++RLR + VQ+A Sbjct: 31 LLAPLSGVTDLHLRRIARRCGASAVVSEMVAAEDLARGSAEARLR-AEGEGVRPHVVQLA 89 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G DP+ MA+ AR+ +GA +ID+NMGCPAKKV AGSAL++ D +L V AV Sbjct: 90 GCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLLAAVREAV 149 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 VPVT+K+R GW RN ++A+ AE G+ A+T+HGRTR + G A++ +IRAV + Sbjct: 150 AVPVTVKMRLGWDDASRNAPDLARRAEALGLSAVTVHGRTRQQFYAGRADWAAIRAVVEA 209 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 VSIPV+ANGD+ +ARA L +GA A+MIGRAA GRPW+ + L G P L Sbjct: 210 VSIPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVAAGLR-GAPAPALTR 268 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP-NDQFRRTFNAIEDASEQLE 311 A L H L YG A G R ARKH++ Y R D +E L Sbjct: 269 AAQADLAGEHYEGLLALYGVAMGVRHARKHLAAYADHAGGLAAGERARLVTTTDPAEALA 328 Query: 312 ALEAYF 317 L F Sbjct: 329 LLRRAF 334 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 101/322 (31%), Positives = 161/322 (50%), Gaps = 6/322 (1%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 RI + +N+LIAAP+AG+T PFR L + GL +EM+S ++D++ + Sbjct: 10 RILRILNKNKLIAAPLAGVTTPPFRKLLRKYFDGLIYTEMVSVEGVRRKADRTLSYLSIT 69 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+ GS P+ +A + + A+ +DINMGCP KKV + +G A+++ P Sbjct: 70 ESDQPIGVQLFGSKPEAYTEAIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVN 129 Query: 121 VKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 I+ A+ DVP+T+KIR GW ++ N E+ ++A + G +A+T+HGRT+ +F+G Sbjct: 130 SGKIVAAAKKALGDVPLTVKIRLGWDKKNLNYNEMIKIAYEEGAEAVTVHGRTKTEMFSG 189 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 YD I K +P+I NGD+ D +L TG D +MIGR +PW+F I + Sbjct: 190 VVNYDLIADAKANAKLPIIGNGDVVDVATYEKMLA-TGVDGVMIGRGMMKQPWLFESILN 248 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 D + L E L+ VR + G +K++ W+L+ R Sbjct: 249 GRDPSGYMTYDKLYE---LIKELVRNEKIYKGEMFFLETVKKYIVWFLKGMPGAAALRNK 305 Query: 300 FNAIEDASEQLEALEAYFENFA 321 +E L+ YF Sbjct: 306 LYMCPTETEMFVMLDEYFGRLG 327 >UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE39_9ACTO Length = 411 Score = 297 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 115/358 (32%), Positives = 162/358 (45%), Gaps = 61/358 (17%) Query: 17 MAGITDRPFRTLCYEMG------------------------------------------- 33 MAG+TD PFR LC MG Sbjct: 1 MAGVTDVPFRRLCRIMGESGLPDHLRPVGIPSWAAESGEGATASSPKAPGESSNEPRHVT 60 Query: 34 -------AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARIN 86 AGL V+EM++S V E++++ + +R++Q+ G +P MA AA + Sbjct: 61 IPRVDAPAGLYVTEMVTSRALVEENERTLEMVRPDPAERVRSLQLYGVNPAVMAKAATML 120 Query: 87 VESGA-QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD---------VPV 136 VE ID+N GCP KV +K G+AL D+ ++ VV A D +PV Sbjct: 121 VERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRACDEAGERAGREIPV 180 Query: 137 TLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIP 196 T+KIR G EH + A A+ G ALT+H RT+ + G A +D I +K + IP Sbjct: 181 TVKIRIGIDSEHETATDAALNAQKLGAAALTLHARTQNQHYAGHAHWDEIARLKDLLDIP 240 Query: 197 VIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVK 256 V NGD+ + A A+L+ TG D + +GR AQGRPWIFR+I G + P LAEV Sbjct: 241 VFGNGDVFEAADALAMLEQTGCDGISVGRGAQGRPWIFRDIVAAYHGGSIPPGPSLAEVV 300 Query: 257 RLL-CAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEAL 313 ++ C + D + R RKH+ WYL+ A R + + E E L Sbjct: 301 SVIECHAAWCVVDQGDEERALREMRKHIGWYLRGFAVGGPQRHALSMVSTLQELHERL 358 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 295 bits (757), Expect = 9e-79, Method: Composition-based stats. Identities = 109/319 (34%), Positives = 164/319 (51%), Gaps = 4/319 (1%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHI 61 IG+ Q+ +R AP+AG T RPFR E+G GL ++++ + + + S+ + Sbjct: 42 IGRRQIPSRYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAVKLLSNNAFSQQLIATS 101 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 +VQ+ G+DP +A AAR + G + +D+NMGCP KVN + G+ L+ P Sbjct: 102 LLDQPLSVQLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDPTGA 161 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 ++ VV +V +PVT+K+R GW + + +A+ E+ G A+TIHGRTRA F+G+ Sbjct: 162 TRLVALVVASVSIPVTVKMRLGWDAQSLSAPLLARQFEEVGAAAITIHGRTRAQGFSGKV 221 Query: 182 EYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + I A V SIPVI NGD+ A ++ TG A+ IGR A PWIFR++ + Sbjct: 222 SREGIAATVAAVQSIPVIGNGDVRTVEDAISMRRETGCAAVAIGRGAMLDPWIFRKLHDF 281 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 TG+ P P E + L H RE+ D +G + R+ RK WY Sbjct: 282 EMTGQYAEPGP-EEQIQFLVTHFREMVDLFGE-QATRLFRKFAGWYGARLGIPQDLEDRL 339 Query: 301 NAIEDASEQLEALEAYFEN 319 +E SE E + E Sbjct: 340 RRVESLSEFEEIVAEIRER 358 >UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacteraceae RepID=D1AZV6_SULD5 Length = 312 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 162/310 (52%), Gaps = 11/310 (3%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 L AP+AG TD PFR++ + GA +T SEM+S+N ++S+K+ + VQI Sbjct: 12 LALAPLAGFTDLPFRSVVKKFGADVTFSEMISANALRFKSEKTFKMLTKSPLEIPYIVQI 71 Query: 72 AGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 GSD + +A I + G ID+N GCP K+ + AGS+LL D ++ ++ + Sbjct: 72 VGSDLTSIKEAVLILNDMEGIAGIDLNCGCPVPKMVAQEAGSSLLLNLDHMQRVIETIKT 131 Query: 131 AVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 + T K+R G+ + E IA+ E+ G +++HGRTR+ + E +Y +I Sbjct: 132 YSNKRYTSAKVRLGF--NTKIPELIAKACENAGADFMSMHGRTRSGAYKAEVDYQAIAEA 189 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 + V IPVIANGDIT KA V+ TG LMIGR A G PWIF ++++ L E Sbjct: 190 RAAVKIPVIANGDITSLEKALHVMSVTGCKNLMIGRGALGNPWIFYQLKNGLHHVEKT-- 247 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 ++ ++ H + +FYG KG I RKH+ Y + +FR N IED Sbjct: 248 ----KILEIVLEHYDAMVEFYGE-KGVSIFRKHLHTYSKGFREASEFRDKINRIEDKVLM 302 Query: 310 LEALEAYFEN 319 EA+ +F Sbjct: 303 REAIAHFFAQ 312 >UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Y9_ATOPD Length = 363 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 96/314 (30%), Positives = 151/314 (48%), Gaps = 7/314 (2%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 N ++ APMAG++D +RT+ GAGL SEM+S + +K+ + + V Sbjct: 37 NPVLMAPMAGVSDGVYRTMARAGGAGLAYSEMVSVAGIHFGGEKTWELVEPLSTEPDIAV 96 Query: 70 QIAGSDPKEMADAA-RINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 Q+ GS P++ +AA +I+ G +IDINM CP KV +K GSALL P++ +++ Sbjct: 97 QLFGSKPEQFKEAAAQISERLGNKLALIDINMACPVPKVVKKGEGSALLDTPELAANLVK 156 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 ++ V VPVT+KIR G + E A+ E G A+ +HGR ++ G+AE++++ Sbjct: 157 ACLSEVTVPVTVKIRRGRRQDEEVAPEFARAMEAAGASAIAVHGRFATQMYRGQAEWETV 216 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 V VSIPVI +GD+ L TG A+MI R G PWIF+ Q L+ Sbjct: 217 NRVCDAVSIPVIGSGDMLSAEDVAHALKETGVTAVMIARGTYGNPWIFKNTQALLEGKTP 276 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P V ++L + + + AR +WY + +R A Sbjct: 277 FVP----SVDQMLASFMMHVKLLDAAHIHIARARSLSTWYFRGIPNAAYWRGKSVRCVTA 332 Query: 307 SEQLEALEAYFENF 320 + ++ E Sbjct: 333 QDFIDLALEIKETV 346 >UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCCF0E Length = 429 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 114/366 (31%), Positives = 167/366 (45%), Gaps = 53/366 (14%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-------------------------- 34 +R+G + ++ APMAG+T+ FR LC E GA Sbjct: 10 LRLGDLTVDVPVVLAPMAGVTNAAFRQLCAEQGALRGSQARTSGQALRGSQARTSGQALR 69 Query: 35 ----------------------GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 GL V EM++S V S + +R+VQ+ Sbjct: 70 GSQARTSGQALRGSQARTSGQAGLYVCEMITSRGVVEGDRTSLGMLTFAPNERVRSVQLY 129 Query: 73 GSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G DP + A I + G +D+N GCP KV RK G+AL ++ ILTE V A Sbjct: 130 GIDPATVGRAVAILCGDHGVDHVDLNFGCPVPKVTRKGGGAALPWKATLLGRILTEAVAA 189 Query: 132 V---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 VPVT+K R G +H + +AED G A+ +HGRT ++GEA++ +I A Sbjct: 190 AAPFGVPVTMKTRKGIDDDHLTYLDAGHIAEDSGCAAIALHGRTAVQHYSGEADWAAIAA 249 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 +K VSIPV+ NGD+ + A ++ TG D +++GR GRPW+FR++ E +P Sbjct: 250 LKAAVSIPVLGNGDVWEAADALRMVRETGCDGVVVGRGCLGRPWLFRDLAAAFTGEETVP 309 Query: 249 PLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 LP L EV ++ H L + G +G RKHV+WYL+ R+ + + Sbjct: 310 ALPTLGEVMAIMRRHAELLGGWLGEERGCVEFRKHVAWYLKGFPAGPSVRQRLGQVSSYA 369 Query: 308 EQLEAL 313 E L Sbjct: 370 ALDELL 375 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 154/321 (47%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG L + L APM T PFR +C + GA L SE + + ++ + Sbjct: 1 MRIGNISLAHGLTLAPMEEHTSLPFRLICKQQGASLVCSERIDAKDVAERDKRAIKLLST 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 QI+G+D ++ +AAR+ E G ++D+N CP +++ + G AL+ P Sbjct: 61 TSAERPAVGQISGNDAAQIGEAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQPQR 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + ++ AV +PVT+K+RTG E AQ E G A+ +H R+ + G Sbjct: 121 IAELVAAAKQAVSIPVTVKLRTGPKAGEDTAVETAQRVEQAGGAAIILHARSVEQAYLGG 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 ++ + VK+ VSIPV+ +G + P A + L+ +GAD + IGR G PWIF++ + Sbjct: 181 PDWQHVTRVKEAVSIPVLGSGGVRTPQDAISFLESSGADGVAIGRGCLGNPWIFQQARTL 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L + AE ++L A V +FY + + ++ + +F++ Sbjct: 241 LFGSREIIEPSPAERGKVLLALVEHEFEFYSAHLAQKRLARTACYFAKFLPDFAEFKKEI 300 Query: 301 NAIEDASEQLEALEAYFENFA 321 +AI++ ++ + +F A Sbjct: 301 HAIKNLAQFRTLVREWFRPVA 321 >UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C170_DESAD Length = 323 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 94/308 (30%), Positives = 143/308 (46%), Gaps = 2/308 (0%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 ++ AP+AG +D PFR LC + G + +EM+S ++ ++ + E Sbjct: 8 PDKPWLAPLAGYSDLPFRMLCRKRGCAVACTEMVSVKGLKYDGKGTKALLATCPEDNPLV 67 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ+ G +P++ +D ++ G D+N GCP KKV + GSAL PD + + + Sbjct: 68 VQLFGGEPQDYSDTMPQLIDEGYSFFDLNSGCPVKKVLKTGGGSALHLDPDRLVETASAM 127 Query: 129 VN-AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 V A + V +KIR G+ N EIA+ ED G+ LT+H R +F+G+A++ + Sbjct: 128 VRVAGEGKVGVKIRLGFMNGEDNFLEIAKRLEDTGVAWLTMHPRYAKQMFSGQADWSKLA 187 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 +KQ VSIPVI +GD+ + TG D +M R A P IF LD + Sbjct: 188 VLKQNVSIPVIGSGDLFTAEDGMECIKQTGIDGIMFARGALFDPEIFARYLKLLDDPKCA 247 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 P K + H+ DF G + +R R + Y + R A ED Sbjct: 248 TLPPFDLGK-TMEEHINMTRDFDGSNRSFRKIRSILPRYAKGMDGIRSIRTKLTACEDWE 306 Query: 308 EQLEALEA 315 E LEA Sbjct: 307 ELLEAARE 314 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 99/318 (31%), Positives = 154/318 (48%), Gaps = 4/318 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG L +R AP+AG T FR E+G GL ++++ ++ + S KS+ + Sbjct: 14 IQIGGRVLASRYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALLT 73 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 T+QI G E+ AAR + G +D+NMGCP K+N G+ ++ PD Sbjct: 74 TSPADRPLTIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPD 133 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ EVV+AV +PVT+K+R GW + +A+ E G+ A+T+HGRTR F G Sbjct: 134 AACQLVAEVVDAVSIPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVHGRTRNQGFGG 193 Query: 180 EAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 + IR + V IPVI NGD+ A + + TG +A+ IGR A PWIFR+I Sbjct: 194 TVDLQGIRQTVEAVQQIPVIGNGDVCTVEDAFRMREQTGCEAVSIGRGAMLDPWIFRKIS 253 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 + E + E + L H + + + G R+ RK +WY + Sbjct: 254 QAVR-DEPVTEPTRDEQIQFLERHFSLMFEQH-ELYGCRLIRKFAAWYGARLGIPEDLED 311 Query: 299 TFNAIEDASEQLEALEAY 316 +E E + +E Sbjct: 312 RLRRLESDEEFKDIIEQI 329 >UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinomycetales RepID=B8HFM3_ARTCA Length = 392 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 101/321 (31%), Positives = 171/321 (53%), Gaps = 6/321 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +++G + +I APMAGIT+ FR LC E G G+ V+EM++S V + +S + H Sbjct: 17 LKLGPLTVDTPVILAPMAGITNSAFRRLCREYGGGMYVAEMVTSRALVERTPESLRIISH 76 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D+ +R+VQ+ G D + A R+ VE A ID+N GCP KV R+ GSAL D Sbjct: 77 DDDEKVRSVQLYGVDAGTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKID 136 Query: 120 VVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 + +I+ V ++P+T+K+R G +H + ++A D G+ A+ +HGRT A Sbjct: 137 LFTAIVQTAVREASKGNIPLTIKMRKGIDDDHLTYLDAGRIARDSGVAAVALHGRTAAQF 196 Query: 177 FNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 ++G+A++ +I +++ + IPV+ NGDI A ++ TG D +++GR QGRPW+F Sbjct: 197 YSGQADWSAIARLREALPDIPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGRPWLFG 256 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQEHAPND 294 ++Q + ++ L +V + H + + +G K R RKH++WY + + Sbjct: 257 DLQAAFEGSDVRHRPNLRQVAEGVYRHAELMVETFGDEGKALREIRKHIAWYFKGYVVGG 316 Query: 295 QFRRTFNAIEDASEQLEALEA 315 + R + + L Sbjct: 317 ELRTRLALVTSLEVLRDTLAE 337 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 126/243 (51%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I + L +R + PMAG TD P R L + GAG TVSEM+SS V+ K+ + Sbjct: 40 LKIREISLPHRAVFGPMAGFTDAPARRLMAQHGAGFTVSEMVSSRALVYGDHKTVSLLKA 99 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQI G P+ M AA + +DINMGCPA K+ AGS L+ PD Sbjct: 100 EPNGAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPDR 159 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I+ EVV PVT+K+R GW EH E A+ E G + +H RTR ++ Sbjct: 160 CGRIVEEVVKNTSRPVTVKMRKGWDAEHVTAVECAKACEQAGAVLIAVHARTREQMYTPG 219 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + I AVK V +PV+ NGDI A +++ TG D +MI RAA G PW+F + Sbjct: 220 IDPSIIAAVKDAVHVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAALGDPWLFERVNAA 279 Query: 241 LDT 243 L+ Sbjct: 280 LEG 282 >UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S213_NEMVE Length = 570 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 132/309 (42%), Gaps = 13/309 (4%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 ++L AP+ I + PFR +C + GA +T EM + + Sbjct: 214 IDFSDKLYLAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQQSEWALVKRHSSED 273 Query: 66 IRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQ+ G+ P M A + E+ IDIN GCP V K AGSAL++ ++ I Sbjct: 274 IFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERKGKLQQI 333 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEH--RNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 + + + +D+P+T+KIR G + N ++ D G +TIHGR+R + A+ Sbjct: 334 VQGMKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQRYTKSAD 393 Query: 183 YDSIRAV-KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 +D I V K +PV NGDI A G +MI R A +PWIF EI+ Sbjct: 394 WDYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAGVAGVMIARGAIIKPWIFTEIKEQR 453 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQ---EHAPNDQFR 297 + +E +L V + +G +G R+ + +L + P Sbjct: 454 HWD-----ISSSERLDILRQFVNAGLEHWGSDTQGVEKTRRFLLEWLSFTCRYVPVGLLE 508 Query: 298 RTFNAIEDA 306 R I D Sbjct: 509 RLPQRINDR 517 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 156/316 (49%), Gaps = 10/316 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +R+G + + +PMAGI+D P+R + G+ + +E +S+ + KS Sbjct: 2 VRVGNVIIEGDVALSPMAGISDSPYRQITKRFGSAFSYTEFVSTEQLKLGNAKSLDMFRF 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ QI GSD + +A+ I E IID+NMGC KV+ +G+ LL+ + Sbjct: 62 VEMERPIVFQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNIRL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ + N ++PVT KIR GW N E ++ ED G+ A+++HGRT+A + G Sbjct: 122 AGKMIEGIRNRTNLPVTAKIRLGWDANSLNYLETLKVLEDSGVSAISVHGRTKAMAYTGI 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++++I +K + ++P+ NGD+ +A G D ++IGR A G PW+F + Sbjct: 182 ADWNAIGEIKSRANVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRKAIGNPWVFGKTPKQ 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFY--GPAKGYRIARKHVSWYLQEHAPNDQFRR 298 P ++K ++ H+ + +FY + RKH Y++ + +R Sbjct: 242 F--------FPWYQIKDVILEHLDLMLNFYPTSDDYALILFRKHFIKYIENIGFPEDTKR 293 Query: 299 TFNAIEDASEQLEALE 314 ++ +E + LE Sbjct: 294 LLLSVASVNEFKDTLE 309 >UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=2 Tax=Eumetazoa RepID=UPI000186DAF4 Length = 557 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 75/287 (26%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + + +L +P+ + + PFR +C E GA +T SEM + + + + Sbjct: 204 KINWKEKLYLSPLTTLGNLPFRRICKEFGADITCSEMAMATSLLQGLKYEWALIKRHESE 263 Query: 65 GIRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + +Q+ G++P M A++ E + IDIN+GCP V +K GS LL+ V++S Sbjct: 264 DLFGIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGLLRREKVLES 323 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 ++ + + +P+T+K RTG + + + D G+ +T+HGR+R + A++ Sbjct: 324 VIKSMSKVMSLPLTVKTRTGVYADKNVAHRLIPMFVDSGVSLITVHGRSREQRYTRTADW 383 Query: 184 DSIRAV-KQKVSIPVIANGDITDPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQHYL 241 + I K IPV NGD+ L + +M+GR A +PWIF+EI+ Sbjct: 384 NYINECGKAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVGRGALYKPWIFKEIKEQK 443 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + + +E ++ V D +G G + RK +L Sbjct: 444 NWD-----ISSSERFDIIKKFVNYGLDHWGSDTMGVELTRKFTLEWL 485 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 83/310 (26%), Positives = 135/310 (43%), Gaps = 4/310 (1%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 AP+AG TD PFR LC E GA + +EM+S ++ S + + VQ+ Sbjct: 20 WLAPLAGFTDLPFRLLCRENGARVAHTEMISVKGLIYNSQGTWDLLATAPADTPLVVQLF 79 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G+DP A R E G ID+N GCP +KV + AG+AL++ P + I+ + A Sbjct: 80 GADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIMQTIGRAA 139 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 V +K+R + G+ +T+H RT + G A++ ++ + + Sbjct: 140 PVQAGVKLRLPADGSTDGLLRLRDTLARAGVSWITLHPRTARQGYGGLAQWSALSRMAES 199 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 +P++A+GD+ + AR + TG D +M R A P IF + L TG P Sbjct: 200 SPVPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIF---KADLATGAEEDPCTD 256 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRI-ARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 L +L Y P++ + R + Y++ Q R+ A +D + Sbjct: 257 TASIAALVRRHGQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQARKGIIACQDWEAFEQ 316 Query: 312 ALEAYFENFA 321 + E A Sbjct: 317 YADQLEEALA 326 >UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xenopus RepID=DUS3L_XENLA Length = 640 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 9/285 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 RN+L AP+ + PFR +C +GA +T EM + + Sbjct: 291 IDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGEMAMCTNLLQGQPSEWALLKRHHSED 350 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQ+ G+ P M A + + +DIN+GCP V +K G L+ + + I Sbjct: 351 IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQI 410 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + + +DVP+T+KIRTG + ++ D G+ +T+HGR+R + A ++ Sbjct: 411 VKGMNSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRYTKLANWE 470 Query: 185 SIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 I + +P+ NGDI A L TG +M+ R A +PW+F EI+ Sbjct: 471 YIDQCAKIASPVPLFGNGDIISYEDANRALQ-TGVAGVMLARGALFKPWLFTEIKEQRHW 529 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L + +G +G RK + +L Sbjct: 530 D-----ISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWL 569 >UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like (S. cerevisiae) n=2 Tax=Taeniopygia guttata RepID=UPI000194DF67 Length = 718 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 9/286 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + +++ +L AP+ + PFR +C GA +T EM + + Sbjct: 368 KLEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQSSEWALLKRHHTE 427 Query: 65 GIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 I VQ+ G+ P M A + + +DIN+GCP V +K G AL+ + + Sbjct: 428 DIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKFEQ 487 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+ + + +DVPVT+KIRTG + ++ + G +T+HGR+R + A++ Sbjct: 488 IVRGMNSVLDVPVTVKIRTGVQEKVNVAHKLIPRIREWGASMVTLHGRSREQRYTRSADW 547 Query: 184 DSIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 I + +P+ NGDI A + G +MI R A +PW+F EI+ Sbjct: 548 HYIAECARLASPMPLFGNGDILSYEDANRAMQM-GVSGIMIARGALIKPWLFTEIKEQRH 606 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + +G +G RK + +L Sbjct: 607 WD-----ISSSERFEILKDFTNYGLEHWGSDTQGVEKTRKFLLEWL 647 >UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteobacteria RepID=B8GW86_CAUCN Length = 335 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 118/322 (36%), Positives = 174/322 (54%), Gaps = 8/322 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG ++ R+ APM G++D PFR +GA +EM++S R Sbjct: 5 LDIGGVEVPGRVWIAPMTGVSDLPFRETASALGAPYVATEMVASAEFAKGRPDVVRRAAV 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLA-GSALLQYPD 119 + + +Q+ G D MA AR+ E+GA+IID+N GCPAK+V A GSAL++ PD Sbjct: 65 GEGLPLTVIQLVGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREPD 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + ++++ V AVDVPVT+K+R GW + N +IA+ AE G +A+T+HGRTR + G Sbjct: 125 LAEALVAAAVEAVDVPVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVHGRTRNQFYKG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ ++ AVKQ VS+PV+ NGDI D AR L+ +GAD +MIGR GRPWI I+ Sbjct: 185 VADWTAVAAVKQAVSVPVLVNGDIVDGETARQALEQSGADGVMIGRGVYGRPWIAGAIEA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA------PN 293 L+ G E + H R FYG G ++ RKH++ Y++ Sbjct: 245 ALE-GRGFQEPEAEERLAIAITHFRRSLSFYGERLGLKMFRKHLASYIEAAPWPETAEAR 303 Query: 294 DQFRRTFNAIEDASEQLEALEA 315 R + +ED + AL Sbjct: 304 RAARASLCRLEDPAAVESALRT 325 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 95/306 (31%), Positives = 154/306 (50%), Gaps = 9/306 (2%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ APMAG+TD FR + + T +EM+S + +++ L++ + VQ Sbjct: 4 KIYTAPMAGVTDYTFRKIIEDFKPDFTFTEMVSVDKLLYKEVPKILKLRENN-----IVQ 58 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I G D M AA+ G + I++N GCP KK+ GSAL++ P ++ ILT + Sbjct: 59 IFGKDIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKIEEILTALRE 118 Query: 131 AVDVP--VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 +D ++LKIR G+ + N EIA++AE + IHGRTR ++GEA++ I+ Sbjct: 119 VLDPKTALSLKIRVGYD-KPENYLEIAKIAEKLKCSNIIIHGRTREQKYSGEADWKYIKE 177 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 VK V+I VI NGDI D A + T D +M+ R G PW+ +I+ + GE+ Sbjct: 178 VKDNVNIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNPWLISQIKELFEFGEIKT 237 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 + + + HV+E + RK++ WY++ D+ + N + E Sbjct: 238 IVRDIDRINMAIRHVKEY-AIDNENVFFPDIRKYIIWYIENIKGIDETKNLINQSFEYDE 296 Query: 309 QLEALE 314 +E LE Sbjct: 297 IIELLE 302 >UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4K9_9DELT Length = 339 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 6/305 (1%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 AP+AG +D PFR L G + SEM+S + ++ ++ + E +Q+ Sbjct: 12 WLAPLAGYSDLPFRLLVKRHGCAVACSEMVSVKGMTFGNEGTQRLIATCPEDDPMVLQLF 71 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN-- 130 G+DP V+ G + D+N GCP +KV + +G L++ PD + I + +V Sbjct: 72 GADPDLFGPVMDWLVDLGYRNFDLNAGCPVRKVLKSGSGVKLMEDPDTLVRIASVMVERA 131 Query: 131 ---AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 A V +K R G+ + E+A+ ED G+ +T+H R +F G+A++ + Sbjct: 132 TAHARGGQVGVKFRLGFDKGNDTYLELARRLEDAGVHWVTLHPRYGRQMFAGQADWSKLG 191 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 +K+ VSIPV+A+GD+ ++ TG DA+M R A P IF + L G+ Sbjct: 192 LLKRAVSIPVVASGDLFTAEDGVRCVEETGVDAVMFARGALYDPAIFDRYRTLLAGGQP- 250 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 P + R++ H+R +F G + +R R + Y + R + D Sbjct: 251 EPRSGESLARIVREHIRLTREFEGDGRSFRKIRSIIPRYAKGLRGIRALRGSLLECRDWE 310 Query: 308 EQLEA 312 EA Sbjct: 311 ALEEA 315 >UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dictyostelium discoideum RepID=DUS3L_DICDI Length = 671 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 7/284 (2%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 N+LI AP+ + + PFR +C +GA +T+ EM + + + + Sbjct: 320 INFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELALLKRHPCED 379 Query: 66 IRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 VQI GS A E A +DIN GCP V AG+AL++ P V+ + Sbjct: 380 KFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVEQL 439 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 L + +++ P T+KIR G + + ++ + G A+T+HGR+RA ++ A +D Sbjct: 440 LRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLANWD 499 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 ++ + SIP+I NGDI + + D + ++MI R A +PWIF EI+ + Sbjct: 500 YVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIKPWIFTEIKEKREWD 559 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAK-GYRIARKHVSWYL 287 + +E + D +G + G RK + +L Sbjct: 560 -----ISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWL 598 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 91/307 (29%), Positives = 156/307 (50%), Gaps = 14/307 (4%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 L N++ APMA TD PFR +C GA T +EM+S + + E++K + E I Sbjct: 2 LENQIGLAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLPQKGEDNI- 60 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQ+ G++ + +AA+ A IDIN CP KV +K +G+ALL+ P ++ I+ Sbjct: 61 GVQLFGNETTKFIEAAKSIQHL-ASWIDINAACPVNKVVKKGSGAALLKNPKLLGDIVFN 119 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + ++D+PV +K+R G+ + N EE+A+ E G + +HGRTR+ +++G A + ++ Sbjct: 120 LKKSIDLPVGVKVRLGY--DQINIEEVAETVEKAGADYIIVHGRTRSQMYSGIANREILK 177 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 +K K++IP+ A+GD+ L GAD +++ R A G PWIF + Sbjct: 178 KLKAKITIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIFTK---------NN 228 Query: 248 PPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 + E H++ + +FYG + RK + Y + RR + + Sbjct: 229 YNPTIDERIDTCLEHLKLMIEFYGSEVYAVKKFRKVLMKYFSGIEGAKEIRRNLDLLLSY 288 Query: 307 SEQLEAL 313 ++ E + Sbjct: 289 NDVAEMV 295 >UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=Epsilonproteobacteria RepID=DUS_HELPJ Length = 328 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 14/317 (4%) Query: 8 LRNR--LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 +N+ L AP+AG TD PFR++ + G +T SEM+SS+ V+ DK+ + Sbjct: 3 FKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPLED 62 Query: 66 IRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 QI+GS + +A +IN ID N GCPA KV GS LL+ + + I Sbjct: 63 HFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEI 122 Query: 125 LTEVVNAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG-EAE 182 L + + +T +K+R G+ E + +EIA D + + +HGRTR+ + + + Sbjct: 123 LKVIRENTNKKITSVKVRLGF--EKKIPKEIAHALNDAPVDYVVVHGRTRSDRYQKDKID 180 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 Y+SI +K+ + PVIANG+I KA VL T AD LMIGRA PWIF +I++ Sbjct: 181 YESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNN-- 238 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 LP K L+ H ++ +FYG +G + RK++ Y + FR N Sbjct: 239 ----TTELPAVVKKDLVLEHFDKMVEFYGD-RGVIMFRKNLHAYAKGEMQASAFRNCVNT 293 Query: 303 IEDASEQLEALEAYFEN 319 + + E++E +F Sbjct: 294 LTEIKSMRESIEEFFNQ 310 >UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES4_ELUMP Length = 318 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 166/317 (52%), Gaps = 6/317 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG + +N L+ APMAGITD PFR C GAG+ +EM+S+ +++ KS + Sbjct: 8 ITIGSFAAKNNLMLAPMAGITDTPFRIHCLNNGAGIVCAEMVSAKAVEYDNKKSVKMLAV 67 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + ++QI G D + ++ AA+ +GA IIDIN GCP KK+NR AG L++ + Sbjct: 68 DKKEHPVSMQIFGGDAESISIAAKAAEAAGADIIDINAGCPVKKINRAGAGCVLIKDEKL 127 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + SI+ VN+V +PVTLK R G ++IA+LAE+ G A+ +H R + G Sbjct: 128 LASIVNAAVNSVSIPVTLKTRIGLTAGDFKGDKIAKLAENEGAAAVIMHARYAGNVHGGP 187 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+ +++ V V IPVI NG I D A + + TG +M+GR A G IF+ I + Sbjct: 188 ADLEALAKVVSAVKIPVIGNGGIVDVNTADKMFE-TGVRGIMVGRGAIGNINIFKSIING 246 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 D EL P E ++ +++ +FYG G +RK V ++++ + R F Sbjct: 247 CDI-ELNPK----ENVKIFFNLIKQNVNFYGEKNGIARSRKTVGFWIKGFPMAGEIRGEF 301 Query: 301 NAIEDASEQLEALEAYF 317 + + + Y Sbjct: 302 VKLNTLAAVQKLFGEYL 318 >UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI99_KOSOT Length = 314 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 11/311 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 N + APMAG TD R + E GA SEM+S V +D++ +++ Sbjct: 3 ENEVGLAPMAGYTDEAMRAISLEWGADFVFSEMLSVEG-VLRNDRTTQKIIP---ETPCR 58 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q+ G+D +A AA+ ++ A DIN GCP KKV ++ AG+ALL+ P+ + +++ + Sbjct: 59 IQLFGNDIARLAMAAKAVLD-KATWFDINAGCPVKKVVKRGAGAALLREPEKLNAMIQTL 117 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 D+PV++KIR GW +I + + A+ +HGRT ++G A+++SI Sbjct: 118 KGISDLPVSVKIRLGWDKNE--VVKIVERLVESRPFAIMVHGRTVVQGYSGVADWESIGK 175 Query: 189 VKQKVS---IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 V + I V +GD+ P K + G D +++ R A G PWIF + + G Sbjct: 176 VVKICKPHGIKVYGSGDVFSPEKIVEAFEKYGVDGVLVARGAIGNPWIFSQYKELKQKGS 235 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 P P E ++ H+++L + G + +RKH Y + + RR + +++ Sbjct: 236 YTVPDP-HERLKVFAKHLKKLIELKGEERAIIESRKHFVGYCKGLLNATKMRREYMKLKN 294 Query: 306 ASEQLEALEAY 316 ++ L Y Sbjct: 295 KTDVENFLMQY 305 >UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=C7LQM9_DESBD Length = 324 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 2/307 (0%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 ++ AP+AG +D PFR LC+E G V+EM+S+ +++S + + D+ V Sbjct: 11 DKPWLAPLAGFSDLPFRLLCHEYGCHAAVTEMVSAKGLIYDSPGTNELLQTCDQDSPLVV 70 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ GS+ + + ++G + D+N GCP +KV + +G+ALL+ P+ + I ++ Sbjct: 71 QLFGSEEPFLVQSIERLRKAGFRYFDLNCGCPVRKVIKTGSGAALLKEPENLLKIAKSMI 130 Query: 130 NAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 +A + KIR GW ++A E+ G +T+H R A F G A++ ++ Sbjct: 131 DAAEPGCMGFKIRLGWYVGQPVYLQVATKLEELGAGWVTMHPRFGAQGFTGHADWSHLKT 190 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 +K++V++PVIA+GD+ A ++ T D++M R A P IF L E P Sbjct: 191 LKERVTLPVIASGDLFHAEDAIKCIEQTSVDSIMFARGALNDPSIFTRYLQ-LRRHEEPP 249 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 +++ ++ G R V +L+ RR + E Sbjct: 250 AKSWQQMEDMVRRLSELYPQHGMDRLGLLKMRTLVPRFLKGLPGARALRRDIVFCKSWDE 309 Query: 309 QLEALEA 315 L+ Sbjct: 310 VFAILQT 316 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 86/310 (27%), Positives = 138/310 (44%), Gaps = 16/310 (5%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + I APM ++ FR LC ++GA + M+ S ++ H + Sbjct: 23 SPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFEHHIQDRPLV 82 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ G+DPK + AA++ VE +D+N+GCP + GS L+ + VK+ + + Sbjct: 83 VQFCGNDPKTVLAAAKM-VEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTL 141 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSI 186 +++PVT+KIR P+ E A + ++ G LT+HGRT+ E +D I Sbjct: 142 SAGLNIPVTVKIRV--FPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVNWDII 199 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 R +K++++IPVIANG I L+ TG D +M P +F + + GE Sbjct: 200 RRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADTNN--TPGED 257 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWY-LQEHAPNDQFRRTFNAIED 305 L LA E Y PA +I R H+ Q+ + R A + Sbjct: 258 TSFLELA-------RQYLECATLYPPASD-KIVRAHLFKILFQDLRVHSDLRDALAAAKS 309 Query: 306 ASEQLEALEA 315 E +E ++ Sbjct: 310 QQEMVEIVDE 319 >UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1LWM8_METRJ Length = 341 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 118/296 (39%), Positives = 163/296 (55%), Gaps = 3/296 (1%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + AP++G+TD R + GA +SEM+++ S ++ LR + VQ+A Sbjct: 27 LLAPLSGVTDLHMRRIARRCGADAVISEMVAAREFTRGSGEATLR-AEGSGVDLHVVQLA 85 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G + MA+AAR+ GA +ID+NMGCPAK V +GSAL++ D + +L V AV Sbjct: 86 GCEAGPMAEAARLAEAGGADVIDVNMGCPAKIVTGIASGSALMRDLDHAERLLASVRGAV 145 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 +PVT+K+R GW RN ++A AE G+ A+T+HGRTR + G A++ +IRAV Sbjct: 146 SIPVTVKMRLGWDDASRNAADLAARAERLGLNAVTVHGRTRQQFYKGRADWAAIRAVVAA 205 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 VSIPVIANGD+TD ARA LD +GA +MIGRAA GRPW+ ++ L TG Sbjct: 206 VSIPVIANGDVTDFASARACLDASGAAGVMIGRAATGRPWLVGQVAAAL-TGRPAAEPSR 264 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTFNAIEDAS 307 +E L H L YG G R ARKH++ Y A + R D Sbjct: 265 SEQAALAAEHYAGLLSLYGRDMGVRHARKHLAAYAETGGALDPAERSALLTTTDPE 320 >UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C5_9ACTN Length = 390 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 100/341 (29%), Positives = 149/341 (43%), Gaps = 31/341 (9%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 +AAPMAG+T+ +R + GA SEM+S ++ +R + VQ Sbjct: 36 PFLAAPMAGVTNSAYRIMNRLGGAQYAYSEMVSVAGLCMKNQATRELCLPHTAEPNLIVQ 95 Query: 71 IAGSDPKEMADAARINVES---GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 + GSDP + A + E IDINM CP KV ++ GSAL+ P +++ Sbjct: 96 LFGSDPVQFQRACALVGELLGDKLSCIDINMACPVPKVTKRGEGSALMCDPHRACALVRA 155 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + V VPVT KIR G+ +H + E + +D G AL +HGR L+ GEA ++SI+ Sbjct: 156 CLREVRVPVTCKIRRGYYMDHESAAEFGRALQDAGASALAVHGRFAKQLYKGEANWESIK 215 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 V + V IPVIA+GD+ A +L T A A++I R G PWIF + + +LL Sbjct: 216 RVVEAVDIPVIASGDVMSAEDACRILYKTQAHAVLIARGTYGNPWIFDDALKIFNKKKLL 275 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGY----------------------------RIA 279 +++ LL A + + A Sbjct: 276 LKGNPSDLSALLDAGLYNSSAREHNRHAHITDTHSISARLNALELHLRLLAATHAHMARA 335 Query: 280 RKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 R SWYL + +R+ F E L L+A+ E Sbjct: 336 RSLCSWYLYGLSHAALWRQKFMTATTLDEFLHLLQAFKEQV 376 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 103/319 (32%), Positives = 164/319 (51%), Gaps = 13/319 (4%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE--- 63 + +R APMAG++D R C +MGAGL V+E S + + + ++ + M I E Sbjct: 4 KFSSRAFLAPMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEEQLKENMKTIQEFIE 63 Query: 64 ----PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +VQ+ GSD + AA I VE IID NMGCPA + +++AG ALLQ + Sbjct: 64 FSEQERPISVQLFGSDLYALEKAATI-VEPYFDIIDYNMGCPAPHITQQMAGGALLQEVN 122 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNC-EEIAQLAEDCGIQALTIHGRTRACLFN 178 + + I +VNAV PVTLKIR+G + +IA++AED GIQ +T H RT + ++ Sbjct: 123 LTQQIFETLVNAVKKPVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPRTVSQGYS 182 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A++ I+ +K+ +IPV+ NGDIT P A+ +LD TG D +MIGR A G P++F +I Sbjct: 183 GSADWKLIKELKEISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGRGAMGNPFLFEQIN 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL TG + ++ + + + + + + + R Sbjct: 243 DYLKTGSYKEY-SFKDRLDSFFDYLHLTNQYK---IKFSNIKSQAMRFTKGLKGGSKLRS 298 Query: 299 TFNAIEDASEQLEALEAYF 317 ++ + + + + Sbjct: 299 KITFSKNLEDLEKIMREAY 317 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 77/318 (24%), Positives = 136/318 (42%), Gaps = 18/318 (5%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + + APM ++ FR +C + G L S M S +E Sbjct: 18 SPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDPMI 77 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ G+DP+ + A++ ++ + IDIN GCP R G+ LL PD+++ I++ + Sbjct: 78 VQFCGNDPETLVKASKF-IDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERIISTL 136 Query: 129 VNA-VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDS 185 + + PV+ KIR + + + + E G + +HGRT G A +++ Sbjct: 137 SESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTGPANWEA 196 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 ++ +K + SIP IANG I++ + L+YTGADA+M PW+F+ + T E Sbjct: 197 LKILKSRCSIPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENPWLFQGFK----TPE 252 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ---EHAPNDQFRRTFN- 301 + P ++ ++ + P G R H+ FR N Sbjct: 253 AINNKPS--QFQIALEYLDYCILYPPPNVGI--IRTHLYRIFHTIFSLPGAHIFRDEINN 308 Query: 302 --AIEDASEQLEALEAYF 317 + + ++ LE ++ Sbjct: 309 SHQVHEFQLFVQNLENFY 326 >UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129C Length = 333 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 104/319 (32%), Positives = 163/319 (51%), Gaps = 13/319 (4%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS--RLRMVH 60 +G ++ NR++ AP+AGI + R GAGL VSEM+SS+ + ++K+ L VH Sbjct: 11 LGGVEIPNRVVLAPLAGIGNWFVRLQAKRYGAGLAVSEMVSSHAIHYGNEKTCTELLRVH 70 Query: 61 IDE-----PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALL 115 DE G ++Q+ G+DP M AA E+GA +ID+NMGCP KV + AG+AL+ Sbjct: 71 PDEWRAGAGGPVSIQLFGNDPDIMRSAAARAAETGANLIDLNMGCPVPKVCKTGAGAALV 130 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA-QLAEDCGIQALTIHGRTRA 174 + PD+ I +PVT+K+R G P RN E+A +L D GI L IH R + Sbjct: 131 KDPDLAVEIARAAAEGSGLPVTVKLRPGLRPGDRNGIELAYRLVADAGIAGLCIHPRHAS 190 Query: 175 CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 +G +Y+ + + +++ +PV+ +G + R V ++TGA+A+++ R + G PW+F Sbjct: 191 QQHSGRPDYELAKRLVEELPVPVLISGGLRSAELVREVFEFTGAEAVLLARGSLGNPWLF 250 Query: 235 REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPND 294 ++ GE L EV +L V L G + R RK WY+ Sbjct: 251 EQVLGDR-VGEPTREEILTEVDWILDRAVEHL----GEGRAARYLRKFYPWYVTRLGEGA 305 Query: 295 QFRRTFNAIEDASEQLEAL 313 + + E +E A Sbjct: 306 ELQDRLQRTETVAEARAAF 324 >UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovibrionaceae RepID=A1VHK2_DESVV Length = 449 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 79/309 (25%), Positives = 130/309 (42%), Gaps = 2/309 (0%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 AP+AG +D FR LC + GA + +EM+S+ ++ S +R + E VQ+ Sbjct: 35 WLAPLAGYSDLSFRLLCRKAGAAVCCTEMVSAKGLIYYSPGTRDLLATTPEDAPLVVQLF 94 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY-PDVVKSILTEVVNA 131 G DP M A +E G + D+NMGC KV + G+A+L+ P + + A Sbjct: 95 GCDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVARAMLRTA 154 Query: 132 VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 V K R GW ++ + D G +T+H R F+GEA + ++ + + Sbjct: 155 GAGRVGFKFRLGWDVGQEVWADLGRALADLGAGWVTLHPRYARQGFSGEARWSTLGELVR 214 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 VS+PVIA+GD+ L TG ++M R A P +F + + G P Sbjct: 215 AVSVPVIASGDLFTAADGVRCLRETGVASVMYARGALNDPGVFHAHRERVA-GRPDPGYT 273 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 ++ L+ H + R V Y++ R+ + + E Sbjct: 274 PQRLRALITRHAELARQYAPGRSALLKMRTFVPRYVRHLPGARALRQHLASCFEWEMLDE 333 Query: 312 ALEAYFENF 320 L +F + Sbjct: 334 LLATFFADV 342 >UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3RKU4_TRIAD Length = 581 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 11/308 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 Q N+L AP+ + + PFR +C GA +T SEM + + + Sbjct: 230 QINFSNKLFLAPLTTVGNLPFRRICKTFGADVTCSEMALCTNLLQGQQSEWALVKRHESE 289 Query: 65 GIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + +Q+ G+ P +A + + +D+N+GCP V + AGSAL+ + ++ Sbjct: 290 DLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSALMGRANKLQQ 349 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+T + + + VP+T+K+RTG + ++ + G +T+HGR+R + A++ Sbjct: 350 IVTGMSSILSVPLTVKLRTGILAKKSTAHKLIPQIREWGASLVTLHGRSREQRYTKLADW 409 Query: 184 DSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 I +P+I NGDI ++ T +MI R A +PW+F EI+ Sbjct: 410 SYINECATAADPMPLIGNGDILSFEDYLEHMNNTNVAGVMIARGALIKPWLFTEIKERRH 469 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWY---LQEHAPNDQFRR 298 + E L +V + +G + G R+ + + L + P R Sbjct: 470 WD-----ISANERFEFLRKYVNYGLEHWGSDSLGVEKTRRFLLEWLSFLHRYIPIGVLER 524 Query: 299 TFNAIEDA 306 I D Sbjct: 525 VPQRINDR 532 >UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI000058804E Length = 655 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 8/276 (2%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 AP+ + + PFR +C ++GA +T EM + + I VQ+ G Sbjct: 287 APLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQGQSSEWALLRRHPSEDIFGVQLCGG 346 Query: 75 DPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD 133 P M A + + IDIN+GCP V K AGS L+ + I+ + + +D Sbjct: 347 FPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVRGMSSVLD 406 Query: 134 VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 +P+T+K+RTG ++ +I + D G +T+HGRTR ++ A++D ++ Q Sbjct: 407 IPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTVHGRTREQRYSKLADWDYLKDCVQAA 466 Query: 194 S-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 P I NGDI + + +GA MI R A +PWIF EI+ + Sbjct: 467 DPHPFIGNGDILSYEDSNFFREQSGATGQMIARGALIKPWIFTEIKEQRHWD-----ISS 521 Query: 253 AEVKRLLCAHVRE-LHDFYGPAKGYRIARKHVSWYL 287 +E +L ++ L + ++G R R+ + +L Sbjct: 522 SERFDILQDYINLGLLHWGSDSEGVRKTRRFLLEWL 557 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 147/315 (46%), Gaps = 12/315 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + +I APMA T FR LC +GA T +E++S+ + +L +E Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRNGIPMKLAYFT-EEERPIH 63 Query: 69 VQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 +Q+ GS+P+E+A A+ I E IDIN GC KV R A +LQ P ++ ++ E Sbjct: 64 IQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKE 123 Query: 128 VVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 V A+ +PV+ KIR G+ + E I + + G+ + IH RT F+G+A + Sbjct: 124 TVEALKPYGIPVSAKIRLGFEKDE--VERIVEELQKAGVSLIAIHARTAKQGFSGKALWH 181 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I+ K+ S+P+I +GD+ + + T D +M+GRAA PWIF+E + D Sbjct: 182 RIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEKRDI- 240 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + L E + + + ++ K + + L+ + + + E Sbjct: 241 ----EVGLKERMDFILEELSMMTEYMSREKACAEIKSQIVQILKGVPNSRELKTYIVHAE 296 Query: 305 DASEQLEALEAYFEN 319 + E ++ +E E Sbjct: 297 NCKELVKRIEEAKER 311 >UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=Deltaproteobacteria RepID=Q30WR3_DESDG Length = 376 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 95/319 (29%), Positives = 145/319 (45%), Gaps = 9/319 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESD-KSRLRM 58 ++IG + RL APMAG+ +R + G GL + M S+ E+ +S + Sbjct: 48 LQIGGRTVNGRLFLAPMAGLGHIAYRQVLESFGGCGLVFTGMCSARAVPTENPARSPVFS 107 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 +E Q+ G+DP++MA AAR G +DINMGC + +K G+ LL+ P Sbjct: 108 WRPEELPALVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLLRDP 167 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AV VPV +K+RTGW+P+ +A+ +D G AL H R Sbjct: 168 ERAVRMVDAVRRAVSVPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPRVAPDRRT 227 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 I VK V IPVI NGD+ D A+L+ TG D + +GR A RPWIF + Sbjct: 228 HRPRTAHIGLVKDAVDIPVIGNGDVFDAADCAAMLERTGCDGVSLGRLAIARPWIFAQ-- 285 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 G + + L A + L Y PA+ ++ +K + +Y ++ Sbjct: 286 --WTRGFVPEKQT---YRDTLFALMDALEAHYDPARAIKLYKKLIMYYAANFTFGNRLFG 340 Query: 299 TFNAIEDASEQLEALEAYF 317 +D +A F Sbjct: 341 RLIRGDDMQAMRRNAQAEF 359 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 5/315 (1%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 +L APM G+T R + G L +E + + S +S + + Sbjct: 4 SFPFKLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISSHK-PSMRSLKKQIVKSGDI 62 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 +VQI G++ + MA++A++ V+ GA +D+NMGCP K+ + GSA+L+ P + +L Sbjct: 63 PLSVQIMGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVL 122 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + V ++ KIR G+ + EI Q D G L +H R R + G +++ Sbjct: 123 ASMREQVPCALSAKIRAGFDNKEGVF-EILQAIVDSGADYLAVHPRRRVDHYEGHSDWRI 181 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I A+K+K IPVI NGD+ A + T D +MIGR A PWIF + L E Sbjct: 182 ISALKEKSPIPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIFLQTSQVLSDQE 241 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ-EHAPNDQFRRTFNAIE 304 + P ++ + DF +G K + Y FR+ + Sbjct: 242 VFIP-NWEDIYHFYHGIAQAFSDFCDNEQGTLNKTKEMLMYFSVNLPEPAPFRKAIGRSQ 300 Query: 305 DASEQLEALEAYFEN 319 E + L ++ + Sbjct: 301 SIDEMMNKLHSFLKE 315 >UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Eukaryota RepID=B5X496_SALSA Length = 654 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 9/286 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 Q +++L AP+ + PFR +C GA +T EM + + + Sbjct: 304 QVDFKDKLYLAPLTTCGNLPFRRICKRFGADITCGEMAMCTNLLQGQSSEWALLKRHESE 363 Query: 65 GIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQ+ G P M A + +DIN GCP V +K G L+ + + Sbjct: 364 DLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGCGLMTRTNKFEQ 423 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+ + + +DVP+T+KIRTG + ++ + G+ +T+HGR+R + A++ Sbjct: 424 IIRGMNSVLDVPLTVKIRTGVQEKANIAHKLIPEMKKWGVSMITLHGRSREQRYTKSADW 483 Query: 184 DSIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 D I Q IP+ NGDI A + T +M+ R A +PW+F EI+ D Sbjct: 484 DYINTCSQLASPIPLFGNGDILSYYDAMKARE-TDVSGIMLARGALIKPWVFTEIKERRD 542 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + +G +G R + +L Sbjct: 543 WD-----ISSSERLDVLRDFTHYGLEHWGSDTQGLEKTRNFLLEWL 583 >UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine synthase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792282 Length = 578 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 141/287 (49%), Gaps = 9/287 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + +N+L AP+ + + PFR +C E GA +T SEM+ S+ + ++ + Sbjct: 226 KINWKNKLYLAPLTTVGNLPFRRICKEFGADITCSEMVLSSSLLQGHNQEWALTKRHETE 285 Query: 65 GIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 I +Q+ G++P +A +A++ E+ +D+N+GCP ++ ++ AGS LL ++ Sbjct: 286 DIFGIQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSGLLLRSKKLEV 345 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 L + +DVP+T+K R+G + ++ + +D G+ +T+HGR+R + A++ Sbjct: 346 CLKSMRTVLDVPLTVKTRSGVNKDQNVAHDLIPMFKDSGVSLITVHGRSRDQRYTKMADW 405 Query: 184 DSIRAV-KQKVSIPVIANGDITDPLKARA-VLDYTGADALMIGRAAQGRPWIFREIQHYL 241 + + K + V ++GDI L + MIGR A +PWIF+E++ Sbjct: 406 NYVNECAKLASPVQVFSSGDIMSYEDYVDSKLQFPDITGAMIGRGALIKPWIFKELKENC 465 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L +V+ + +G +G RK + +L Sbjct: 466 HWD-----ISSNERLEILKKYVKYGLEHWGSDTRGVETTRKFLLEWL 507 >UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coelomata RepID=DUS3L_HUMAN Length = 650 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 9/285 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 +R +L AP+ + PFR +C GA +T EM + + Sbjct: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCED 360 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQ+ G+ P M A + + +DIN+GCP V +K G AL+ + I Sbjct: 361 IFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQI 420 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + +DVP+T+KIRTG + D G+ +T+HGR+R + A++ Sbjct: 421 VRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQ 480 Query: 185 SIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 I Q S +P+ NGDI A + TG +MI R A +PW+F EI+ Sbjct: 481 YIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHW 539 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + +G +G R+ + +L Sbjct: 540 D-----ISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWL 579 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 140/321 (43%), Gaps = 9/321 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDK-SRLRM 58 M IG + NRLI APMAG+T FR + G GL + M + E+ K S + Sbjct: 1 MAIGGKTIANRLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKVSTVFS 60 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 E QI GS P+ MA AA G +DIN GC A+ + R +G+ALL P Sbjct: 61 WREKELDHTVCQIFGSVPETMAKAAERIEAEGFFGVDINCGCSARAICRFDSGAALLAKP 120 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 D+ ++ V AV++PV +K RTGW + + +A+L D G AL H R L Sbjct: 121 DLAAQVVRAVRKAVNIPVIVKFRTGWKDDPAHAVSMARLFCDEGADALIFHPRVAPDLRT 180 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +++ I VK V +PV NG++ A +L +G D + +GR A +PWI + Sbjct: 181 RPPKWEYIGLVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIALAQPWIMAQWS 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 + L + K A + P + K +Y + Sbjct: 241 QGM-------KPALEDYKTAGAAMASFCAKRFEPRTAFLRFMKFSPYYCANFQFGHALHK 293 Query: 299 TFNAIEDASEQLEALEAYFEN 319 A ++ + LE +F++ Sbjct: 294 RLFAAKEIDNIIPVLENFFQS 314 >UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=Alphaproteobacteria RepID=DUS_RHOCA Length = 324 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 129/314 (41%), Positives = 175/314 (55%), Gaps = 3/314 (0%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM-VHIDE 63 +L ++ APMAGITD PFR + GAGL VSEM++S + R + + Sbjct: 7 SLRLDPPVLLAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKPSVRAKAQAELTA 66 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +VQ+AG + MA+AA+I + GA+IIDINMGCPAKKV L+G+AL++ PD Sbjct: 67 GLPTSVQLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALR 126 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 ++ VV AVD+PVTLK+R GW + N EIA AE G++ + IHGRTR + G A++ Sbjct: 127 LIEAVVGAVDLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIHGRTRMQFYTGAADW 186 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 +I AV+ VS+PV+ANGDITD AR LD +GA +M+GR AQG PW +I L Sbjct: 187 RAIAAVRAAVSVPVVANGDITDAASARRALDQSGAAGVMVGRGAQGAPWRLAQIAAALFG 246 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAI 303 +E + H + FYG G RIARKH+ WY A R Sbjct: 247 KADPKLPSGSEFSDFVSEHYEAILSFYGRDLGLRIARKHLGWYA--EAAAAPLRAEMMRA 304 Query: 304 EDASEQLEALEAYF 317 D + L + + F Sbjct: 305 TDPAATLALIRSAF 318 >UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T8_9CHLO Length = 662 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 120/288 (41%), Gaps = 11/288 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R +L AP+ + PFR +C G +T EM + + Sbjct: 301 IDFRGKLYLAPLTTTGNLPFRRICKRYGVDITCGEMAMVTNLLQGQPAEWALLRRHPSED 360 Query: 66 IRTVQIAGSDPKEMADAARINVES-----GAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 I Q+ G M+ ++ + G IDINMGCP V K AGS LL+ P Sbjct: 361 IFGAQVCGGYSDSMSRCMQLLEDEVVSKGGLDFIDINMGCPIDLVCNKGAGSMLLEKPAR 420 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ ++ + P+TLK R G+ R EI D G+ +T+HGR+R ++ Sbjct: 421 MEQLVRASAPLLSCPLTLKTRMGYFDNKRVAHEIIPKMVDWGLAGMTLHGRSRQQRYSRL 480 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I + I +I NGD+ ++ G MI R A +PWIF EI+ Sbjct: 481 ADWDYINQCARASPIQLIGNGDVFSYHDYVKNVEGQGVATCMIARGALIKPWIFTEIKER 540 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 D + E +L + + +G A+G R+ + +L Sbjct: 541 RDWD-----ISATERLDMLKDYAAFGLEHWGADARGVANTRRFLLEWL 583 >UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Treponema RepID=DUS_TREPA Length = 340 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 100/325 (30%), Positives = 156/325 (48%), Gaps = 11/325 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG L+ + AP+AG +D FR++ E A T +EM+SS V +S ++ + Sbjct: 10 VSIGPLSLKGNVFFAPVAGYSDSAFRSIAIEWEASFTYTEMVSSEAMVRDSLNTKRLIRR 69 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +QI GS+P MA+ A++ V+S IDIN GCP K+ + AG+AL + P Sbjct: 70 ASNETHYAIQIFGSNPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTGAGAALTREPT 129 Query: 120 VVKSILTEVVNAV-----DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA 174 + ++ V +AV +PVT+KIR GW H +E A+ A D G QAL +H RT A Sbjct: 130 RLYEVVKAVADAVYAQDARIPVTVKIRAGWEEAHLTWKEAARAAVDAGAQALALHPRTCA 189 Query: 175 CLFNGEAEYDSIRAVKQKVS----IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 + GEA +D I + Q +PV +GD+ P ARA+L++T +M R A G Sbjct: 190 QCYAGEANWDIIADLVQCARGWGEVPVFGSGDLHAPEDARAMLEHTACAGVMFARGAMGN 249 Query: 231 PWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEH 290 P+IFR+ + L G P+ + R + L G + + RK Y + Sbjct: 250 PFIFRQTRQLLTEG-YYTPVTFEQKLRAAWRELHLLAQDVGESSACKQMRKRFVSYAKGE 308 Query: 291 APNDQFRRTFNAIEDASEQLEALEA 315 Q+ + ++ + Sbjct: 309 RGKTQWCQRAVHASSFADFAAVIRD 333 >UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus RepID=Q1J2A4_DEIGD Length = 333 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 154/307 (50%), Gaps = 18/307 (5%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI-RTVQI 71 + APMAG +D P R L E GA TVSEM+S+ V D +L + + R VQ+ Sbjct: 18 VLAPMAGYSDAPMRQLAAEQGALWTVSEMISARGLVLGGDSEKLTLGRPYPGEVGRVVQL 77 Query: 72 AGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 G++P +A A A +D+NMGCP KV + G+ LLQ P+V +++ + + Sbjct: 78 FGAEPDVLAQAVARAESWFAPAALDLNMGCPVPKV-KGRGGACLLQTPEVAYTLVRAMRS 136 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 A + V+ KIR GW + EIAQ G +T+HGRT ++GEA++D+I V Sbjct: 137 ATTLDVSAKIRLGWDTD--RSVEIAQGLAAAGAALITVHGRTSVQRYSGEADWDAIARVA 194 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 V +PV+ +GD+ +ARA L+ TG A+MIGR A G PW+FR + D Sbjct: 195 ASVKVPVVGSGDVKSAEQARARLN-TGVAAVMIGRGAVGNPWLFRALASGDDVV-----P 248 Query: 251 PLAEVKRLLCAHVRELHDFYGPAK----GYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 E R H + FYGP + R RK + YL +H + R + Sbjct: 249 SAQERARTALRHAQLHVTFYGPDRFGLLSVRPLRKVLPHYLPDHP---ELRAALVQVNTV 305 Query: 307 SEQLEAL 313 ++ +AL Sbjct: 306 ADVEQAL 312 >UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogaceae RepID=A7HK00_FERNB Length = 322 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 147/312 (47%), Gaps = 23/312 (7%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 L + APMAG+TD PFR LC + GA +EM+S+ + + + DE Sbjct: 7 LPGNIGLAPMAGVTDYPFRKLCLQHGAYFAFTEMISAKSVIINVKINEIYFPRQDEKDRV 66 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQ+ GSD E+++AA I E G +D+N GCP KV +K AGSALL+ + ++ Sbjct: 67 GVQLFGSDYAELSEAAAIVQEKGL-WVDLNAGCPVSKVIKKGAGSALLKDLGEFRKVVRA 125 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + + + T+K R GW + E+I + + + A+ +HGRT +++G+A + Sbjct: 126 MRSVLK-RFTVKTRIGWEKDE--FEKIYNILLEENVDAVFVHGRTAKQMYSGKATW---- 178 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 + +P+ +GDI + ++ +GA +++ R + G PWIF EI GE Sbjct: 179 KIYNPGFVPLYISGDIYTKEDIKNAMEQSGATGVIVARGSIGNPWIFSEI------GEPN 232 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAK--GYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 ++ LC ++ L Y K G + RK V+ Y + FR I Sbjct: 233 -------CEQRLCTILKHLEYLYDEYKDYGAVVFRKFVAGYTKNMLGARDFRDKVMKIRK 285 Query: 306 ASEQLEALEAYF 317 E + +F Sbjct: 286 LEELSSEFQKFF 297 >UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A55 Length = 669 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 119/286 (41%), Gaps = 10/286 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 Q ++L P+ + PFR +C GA +T EM + + + Sbjct: 320 QVNFNDKLYL-PLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQQSEWALLKRHESE 378 Query: 65 GIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQI G P M A IN + +DIN GCP V +K G L+ + Sbjct: 379 DVFGVQIEGCFPDTMTRCAELINNNTEVDFVDINSGCPIDLVFKKGGGCGLMTRTRKFEE 438 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+ + +DVP+T+KIRTG + ++ + G+ +T+HGR+R + A++ Sbjct: 439 IVKGMNYVLDVPLTVKIRTGVQEKTNIAHKLIPEMKKWGVSMITLHGRSREQRYTKLADW 498 Query: 184 DSIRAV-KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 D I K +P+ NGDI A + TG +MI R A +PWIF EI+ Sbjct: 499 DYISTCSKLASPVPLFGNGDILSYEDAM-MAKETGVSGIMIARGALIKPWIFTEIKEKRH 557 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L + +G +G R + +L Sbjct: 558 WD-----ISSGERLDILRDFTNFGLEHWGSDTRGVEKTRSFMLEWL 598 >UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycetaceae RepID=D2QXV2_9PLAN Length = 354 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 147/324 (45%), Gaps = 9/324 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV---WESDKSRLRMV 59 IG + ++ A ++G +D P R + GA + E+M V + K+R + Sbjct: 7 IGNVHVGFPVVQAALSGYSDWPMRVIARRHGASYALCEVMLDKFLVTLKGDRKKNRHFLY 66 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 DE Q+ G++P E A A E+G +IDIN GCP KKV + G L PD Sbjct: 67 LTDEDHPVAGQLMGAEPAEFAQGALRLAEAGFDVIDINFGCPVKKVLGRCRGGFHLSQPD 126 Query: 120 VVKSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAE---DCGIQALTIHGRTRA 174 V I+ + V +PVT+K+R G + + ++ + G+ A+T+HGRT Sbjct: 127 VALEIVRRTRDIVPAHIPVTVKMRRGLDDTQLSRDRFFEILDGAFAAGVAAITVHGRTVV 186 Query: 175 CLFNGEAEYDSIRAVKQKVSIPVI-ANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 + G + + + VK+ V VI +GD+ A++ TG D + + R A G PWI Sbjct: 187 QRYVGPSRWSFLTEVKRHVGSRVILGSGDLFSAQDCLAMMRETGVDGVTVARGAIGNPWI 246 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN 293 F + + L PP L E K + H R + YG K RK Y H + Sbjct: 247 FSQCRALDAGEPLPPPPTLFEQKATILEHYRLAAELYGDDKCSAPMRKFGIKYAALHPRH 306 Query: 294 DQFRRTFNAIEDASEQLEALEAYF 317 + R F ++ ++ L++++ Sbjct: 307 LELREAFTKVKCLADWQGVLDSWY 330 >UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Chordata RepID=DUS3L_MOUSE Length = 637 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 118/285 (41%), Gaps = 9/285 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 + +L AP+ + PFR +C GA +T EM + + Sbjct: 288 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHPCED 347 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQ+ G+ P M A + + +DIN+GCP V +K G AL+ + I Sbjct: 348 IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQI 407 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + V +DVP+T+K+RTG + D G+ +T+HGR+R + A++ Sbjct: 408 VRGVNGVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRLADWP 467 Query: 185 SIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 I + +P+ NGDI A TG +M+ R A +PW+F EI+ Sbjct: 468 YIEQCAKVASPMPLFGNGDILSFEDA-NCAMQTGVAGIMVARGALLKPWLFTEIKEQRHW 526 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + +G +G R+ + +L Sbjct: 527 D-----ISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWL 566 >UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=B8DIS9_DESVM Length = 383 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 138/306 (45%), Gaps = 5/306 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWES-DKSRLRM 58 + +G + RL APMAG+ FR + + G GL + M ++ E +KS Sbjct: 38 LTVGGRTVPGRLWLAPMAGLGHAAFREVVEDYGGCGLLFTGMCNARAVPTERPEKSEAFS 97 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 EP Q+ G++P+ MA+ AR G +D+NMGC + ++ G+ LL+ P Sbjct: 98 WRAGEPPRLVCQLFGAEPEHMAEGARRVQAEGFFGVDLNMGCSVSAIIKRGCGADLLRDP 157 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AVD+PV +K RTGW+P+ + ++A+ ED G L H R Sbjct: 158 ERAVRMVAAVRRAVDIPVFVKFRTGWSPDPQPAVDLARRFEDAGADCLVFHPRVAPDRRT 217 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 I VK VSIPV+ NGD+ P +LD TG D + +GR A RPW+F Sbjct: 218 QPPRRAHIGLVKAAVSIPVMGNGDVFTPEDCANLLDDTGCDGVSLGRIAVARPWVFAAWT 277 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 +D P P E L + H GPA+ R+ K + + + R Sbjct: 278 GMVDDDPDRNPAPWREAPLALLDALARRH---GPARAVRMFGKFLVYITGNFTYGNGLRG 334 Query: 299 TFNAIE 304 + Sbjct: 335 RLLRVT 340 >UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4RQU5_OSTLU Length = 608 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 127/285 (44%), Gaps = 8/285 (2%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 +++L AP+ + + PFR +C +GA +T EM + + Sbjct: 243 IDFKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGLPSEWALLRRHKSED 302 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQI G P + ++ ++ IDINMGCP V +K GS +L+ P ++++ Sbjct: 303 IFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKPKKMETV 362 Query: 125 LTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 + A+ +T K R + + R A + G A+T+HGRTRA + A++ Sbjct: 363 IRAASAALGKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGRTRAQRYRSVADW 422 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 + + K+ S+P+I NGD+ L+ D M+ R A +PW+F EI+ D Sbjct: 423 EYTKLTKESSSVPLIGNGDVYMQKDYYTHLEEHSVDTCMLARGALIKPWLFTEIKERRDW 482 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L + + +G +G RK++ ++ Sbjct: 483 D-----ISSRERFDILKSFASFGLEHWGSDTRGVESTRKYLLEWM 522 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 131/322 (40%), Gaps = 31/322 (9%) Query: 2 RIGQYQL------RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR 55 ++G Y+ + APM T FR LC + GA + + M S R Sbjct: 38 KLGGYEFFRNVLKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRR 97 Query: 56 LRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALL 115 E VQ G++P+ + AA+ + ID+N+GCP + R GS LL Sbjct: 98 DYWSTCPEDRPLVVQFCGNEPEWVVKAAKYIED-HCDAIDLNLGCPQQIARRGNYGSFLL 156 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 P ++ I+ E+ + VP+ KIR P + ++A ++ G Q LTIHGRT+ Sbjct: 157 DKPHIILPIVQELHKHIKVPIFCKIRL--LPNLDDTIKLALQLQEAGCQLLTIHGRTKEQ 214 Query: 176 L--FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 +G A + +IR +++++SIPVIANG + L+ TGAD +M P Sbjct: 215 KGHNSGIANWKAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSF 274 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAK-GYRIARKHVSWYLQE-HA 291 F ++ + RE DF K + R H+ L+E Sbjct: 275 FSGLKVP------------------IYQVAREYIDFTEIYKTSIHVTRSHIFKMLKEKLD 316 Query: 292 PNDQFRRTFNAIEDASEQLEAL 313 R T A + + Sbjct: 317 VYSDLRETMGATHTNDGFRDII 338 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 89/330 (26%), Positives = 132/330 (40%), Gaps = 31/330 (9%) Query: 2 RIGQYQL------RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR 55 ++ Y+ R + APM ++ +R L GA L + M+ ++ + + R Sbjct: 4 KLAGYEFWTRTLKSPRYVVAPMVDQSELAWRLLGRRHGAQLCYTPMLHASVFLKDPKYRR 63 Query: 56 LRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALL 115 + DE VQ +DP+ + A+R+ V +D+N+GCP G+ L Sbjct: 64 DALASCDEDQPLVVQFCANDPEVLVQASRLVV-GHCCAVDLNLGCPQAIARAGHYGAFLQ 122 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 D++ ++ V VDVP+T K+R PE AQ+ E G Q LT+HGRTR Sbjct: 123 DDWDLLARMVQRVHTQVDVPITCKVRV--FPEVEKTVRYAQMLEAAGCQVLTVHGRTREQ 180 Query: 176 L--FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 G A ++ IRAVK+ V IPVIANG+I A L TGADA+M P++ Sbjct: 181 KGPHTGLASWEHIRAVKRSVKIPVIANGNIQYLEDAERCLRETGADAVMSAEGHLHNPYL 240 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKH---VSWYLQEH 290 F TG L P + A + L R H + + Sbjct: 241 F--------TGRLAP---------VWEASLEYLCLVRDHPCPASYVRGHLFKLMHHCLTM 283 Query: 291 APNDQFRRTFNAIEDASEQLEALEAYFENF 320 A N R E + Sbjct: 284 AENVDLREKLAKASALEAFEEVALRLRDRL 313 >UniRef50_B0SXE6 TIM-barrel protein, nifR3 family n=2 Tax=Caulobacteraceae RepID=B0SXE6_CAUSK Length = 335 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 120/322 (37%), Positives = 181/322 (56%), Gaps = 8/322 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G+ ++ R+ APM G++D PFR +GA +EM++ + R Sbjct: 5 LSVGKVEVPGRVWIAPMTGVSDLPFRETATRLGAAYVATEMVACAEFARGRPDAVRRAAV 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRK-LAGSALLQYPD 119 D + VQ+ G DP M AR+ E+GAQIID+N GCP+K+V +GSAL++ PD Sbjct: 65 GDGLPLMVVQLVGRDPTFMGQGARMAAEAGAQIIDLNFGCPSKQVTGGVASGSALMREPD 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + ++++ V AVDVPVT+K+R GW + RN +IA+ A D G QA+T+HGRTR + G Sbjct: 125 LAEALVAAAVRAVDVPVTVKMRLGWDDDSRNAADIARRAVDAGAQAITVHGRTRCQFYKG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ ++ AVK VS+PV+ NGDI D AR L+ +GAD +MIGR GRPWI + I+ Sbjct: 185 VADWSAVAAVKAAVSVPVLVNGDIIDGDTARLALEQSGADGVMIGRGVYGRPWIAQAIEA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEH--APNDQFR 297 L+ GE E + H R FYG G ++ RKH++ Y++ +++ R Sbjct: 245 ALN-GEGFREPDAEERLAIAVTHFRRSLGFYGQNLGLKMFRKHLASYIEAAPWPDSEELR 303 Query: 298 R----TFNAIEDASEQLEALEA 315 R +ED + + L A Sbjct: 304 RTARAALCRLEDPAAIEDGLAA 325 >UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8N483_COPC7 Length = 561 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 120/273 (43%), Gaps = 23/273 (8%) Query: 2 RIGQYQL-----RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR- 55 ++G Y + I APM ++ FR LC + GA L + M+++ +KS Sbjct: 21 KLGGYDFYRKLGSPKYIVAPMVDQSELAFRRLCRQYGAQLIYTPMINAKMFTDPVNKSYR 80 Query: 56 ---LRMVHIDE-----PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNR 107 + +E VQ +DP ++ +A++ VE +DIN+GCP R Sbjct: 81 ASAFDIASGEEGDMASDRPLIVQFCANDPDQLLQSAKV-VEKYCDAVDINLGCPQDIAKR 139 Query: 108 KLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALT 167 GS L ++ S++ + + +PVT K R P+ E A++ E G Q LT Sbjct: 140 GRYGSFLQDDWPLIYSMINTLHVNLSIPVTAKFRV--FPDVEKTVEYAKMLERAGAQILT 197 Query: 168 IHGRTRACL--FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGR 225 HGR R G A++ IRAVK+ V +PV ANG+I L+ TG D +M Sbjct: 198 CHGRIREQRGQNTGLADWSKIRAVKEAVKVPVFANGNILFQDDIARCLEETGCDGVMSAE 257 Query: 226 AAQGRPWIFREIQHYLDTGELLPPLPLAEVKRL 258 P +F + LD P P ++ + Sbjct: 258 GILYNPALF----YGLDAPSSSPKPPTTDLYPM 286 >UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricales RepID=DUS3_COPC7 Length = 676 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 21/298 (7%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 + + AP+ + + PFR +C ++GA +T EM + + S + + Sbjct: 307 LDWKGKTYLAPLTTVGNLPFRRMCVKLGADITCGEMGLATSFLAGSKEEWSLVRRHPSEK 366 Query: 66 IRTVQIAGSDPKEMADAARINVE---SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 I +Q+AG+ P + A + + +G +D+N GCP V + +GSALL + Sbjct: 367 IFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAGSGSALLDNAGKLG 426 Query: 123 SILTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIA-QLAEDCGIQALTIHGRTRACLFNGE 180 I+ + A+ +P+T+KIRTG N ++ +++ + A+T+HGRTR + Sbjct: 427 KIIQGMNRALGEIPLTVKIRTGVKEGRNNAHKLMPRISAEWSASAITLHGRTRQQRYTKL 486 Query: 181 AEYDSIRAVKQKV----------SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 A++D I+ V +P+ GD ++ G D +MIGR A + Sbjct: 487 ADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINNYGVDGVMIGRGALIK 546 Query: 231 PWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 PWIF EI+ + + E +L+ +V + +G G R+++ L Sbjct: 547 PWIFTEIKERREWD-----ISATERLQLIRDYVEYGLNHFGSDTAGVNTTRRYLCEAL 599 >UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F231_9HELI Length = 317 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 102/313 (32%), Positives = 165/313 (52%), Gaps = 14/313 (4%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 N L+ AP+AG +D PFR + + GA +TVSEM+S + +++ K+ + Sbjct: 8 PNTLMLAPLAGYSDLPFREVVKKFGADITVSEMISVHALAFKNKKTIKMIEKSPLENPFA 67 Query: 69 VQIAGSDPKEMADAARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 +QIAG+D + A E QI+D+N GCPA KV+ +GS+LL+ + + IL Sbjct: 68 LQIAGNDFGIIQKAVEFLNEFKNEIQILDLNCGCPAPKVSSHGSGSSLLKDLNKLVKILQ 127 Query: 127 EVVNAVDVP-VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG-EAEYD 184 + P +++K+R G+ + + EIA D I + +HGRT++ + + +YD Sbjct: 128 LLRETSVFPYLSVKVRLGF--DKKIPLEIANALNDSPIDYVVVHGRTKSDGYKKDKIDYD 185 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 SIR +KQ + P+IANG+IT P A+ V + TGA+ +MIGRAA +PWIF +I++ L+ Sbjct: 186 SIRLIKQNIQHPLIANGEITSPQIAKKVQELTGAEGVMIGRAAIEKPWIFTQIKNNLE-- 243 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + K++ H F G G + RK++ Y + FR NAI Sbjct: 244 -----ESIELRKQVALEHFDRTISFRGDY-GAIMFRKNLHAYSKGLKGASDFRNKVNAIT 297 Query: 305 DASEQLEALEAYF 317 + + E + +F Sbjct: 298 NPALMREEIFNFF 310 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 150/346 (43%), Gaps = 29/346 (8%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAG---LTVSEMMSSNPQVWESDKSRLRMVHI 61 ++ I +PM G+TD PFR LC + L VSE + ++ + ++ Sbjct: 17 NKEIFPNTILSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFNPDGHKQLKFF 76 Query: 62 DEPGIRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E VQI G P MA AA +I + I++N GCPA KV K +GS LL+ Sbjct: 77 PEERPFGVQIFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGSGSGLLRDLPR 136 Query: 121 VKSILTEVVNAVD-----VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 ++ IL +V +D +P+TLK R GW + N E ++AE G++ LT+HGRTR Sbjct: 137 LQEILHDVKAVLDAKTPEIPLTLKCRIGWDDDSINVMETLKIAEGEGVEMLTVHGRTRLQ 196 Query: 176 LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 +NG A +D I V IPVI NGD+ AR ++ G + IGR A PWIF Sbjct: 197 GYNGLANWDWIGKVAAAAKIPVIGNGDVNSVECARERINTYGVSGVSIGRGAMHNPWIFG 256 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQ 295 +I + E + + ++ D ++ + + +++ Sbjct: 257 QIADAWEGREKHVITAQEALDVFPLYYKFKIEDGATEMNAMGRMKQLAARLCKGFVLDEK 316 Query: 296 F--------------------RRTFNAIEDASEQLEALEAYFENFA 321 + R+ + A+E LE +E + A Sbjct: 317 YCHPGAEGDRIQDGDNVAMSVRQALLTCQSAAEMLECVEKLKDGIA 362 >UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Euteleostomi RepID=DUS1L_HUMAN Length = 473 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 17/287 (5%) Query: 1 MRIGQYQLRN-RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESD--KSRLR 57 LR R + APM ++ +R L GA L + M+ + V +++ K L Sbjct: 7 FEFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLY 66 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 E VQ +DP+ AA + + ID+N+GCP R G+ L Sbjct: 67 CEVCPEDRPLIVQFCANDPEVFVQAA-LLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 125 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL- 176 D+++ ++ + VPVT KIR PE AQ+ E G Q LT+HGRT+ Sbjct: 126 WDLLQRMILLAHEKLSVPVTCKIRV--FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKG 183 Query: 177 -FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 +G A ++ I+AV++ V+IPV ANG+I L TG +M P +F Sbjct: 184 PLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFE 243 Query: 236 E--------IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAK 274 + YLD P PL+ V+ L + + Sbjct: 244 GRSPAVWELAEEYLDIVREHP-CPLSYVRAHLFKLWHHTLQVHQELR 289 >UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_DROME Length = 505 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 16/285 (5%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R + APM ++ +R LC GA L S M +N + + + E Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLI 86 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q G+D +++ DAA + + +DIN+GCP R GS L +++ I++ + Sbjct: 87 IQFCGNDAQQILDAA-LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTL 145 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSI 186 + VPVT KIR + A++ E G Q LT+HGRTR G A ++ I Sbjct: 146 HAKLAVPVTCKIRI--FEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYI 203 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI--QHYLDTG 244 + V+Q + IP++ANG+I L TG D +M P IF+ + + Sbjct: 204 KNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGVSPPVWQMAH 263 Query: 245 ELLP-----PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVS 284 E L P P + ++ L + + + R++++ Sbjct: 264 EYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNS----ELRQYLA 304 >UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera RepID=Q17M24_AEDAE Length = 578 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 18/324 (5%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + +++L +P+ + + PFR +C E G +T EM S P + + Sbjct: 224 KINFKDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACSVPIINGMMQEWALTKRHPSE 283 Query: 65 GIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQI G + K ++ A + I + +D+N+GCP + + GSALL+ ++++ Sbjct: 284 DLFGVQICGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRRNILEV 343 Query: 124 ILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ + D T+K R G E+ E+ G +TIHGRT+ + + Sbjct: 344 MIQSCSRILADYDKEFTVKTRMGIYANKYVAHELVPKFEEWGASLVTIHGRTKEQRYTKK 403 Query: 181 AEYDSIRAVK-QKVSIPVIANGDITDPLKARAVLDY-TGADALMIGRAAQGRPWIFREIQ 238 A++D IR Q SIP+ NGDI + +M+GR A +PW+F+EI+ Sbjct: 404 ADWDYIRQCAQQAKSIPIYGNGDIFCYQDYLDAKERAPELAGVMVGRGALIKPWVFQEIK 463 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWY---LQEHAPND 294 + +E +L +V + +G KG R+ + + L + P+ Sbjct: 464 EQKNLD-----PSSSERMDMLKRYVNYGLEHWGSDTKGVENTRRFLLEWQSFLYRYVPSG 518 Query: 295 QFRR---TFNAIEDASEQLEALEA 315 R N +A + LE Sbjct: 519 LLERPPQKINQRPEAFRGRDDLET 542 >UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6M9N8_PARUW Length = 297 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 136/277 (49%), Gaps = 2/277 (0%) Query: 41 MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGC 100 M+ + + + + + Q+ GS P AA+I E G I+D+N GC Sbjct: 1 MVKMDALIRHDPHTYHILDYAANMHPIGGQLCGSKPSIAGQAAKIIEELGFDIVDLNCGC 60 Query: 101 PAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED 160 P K+ + +GS LL+ P+++ I+ +V+AV +PVT+KIR GW + E I Q+ E Sbjct: 61 PVDKITKDGSGSGLLKTPELIGEIVCNMVSAVKIPVTVKIRAGWDEQQIQVENIVQIVEQ 120 Query: 161 CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGAD 219 G QA+ IHGRTR + G A ++ I+ K SI +I NGD+ D A + TG D Sbjct: 121 AGAQAICIHGRTRQQGYRGPANWEYIKRGKLAAKSIKIIGNGDVLDGPSAAKMFCETGCD 180 Query: 220 ALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA 279 A+++ R G+PWI ++I YL+ G+ L + ++ L H E ++ + Sbjct: 181 AVLVARGTLGQPWIVQDILRYLE-GKTAICHSLEDCRQALYQHFLETLHYHPDQRVCIDM 239 Query: 280 RKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAY 316 R+ WYL++ + FR + D + + Sbjct: 240 RRVGCWYLKKSSGTRLFRELISKASDVEVIKNLILDF 276 >UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasidiella neoformans RepID=DUS3_CRYNE Length = 725 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 23/293 (7%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 AP+ + + PFR LC + GA +TVSEM + P V+ + + + + + VQ+A Sbjct: 361 YLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVA 420 Query: 73 GSDPKEMADAARINVES-----GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 G P M AA + + G +D+NMGCP V + AGSAL+ P + +L Sbjct: 421 GGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVG 480 Query: 128 VVNAV-DVPVTLKIRTGWAPEHRNCEEIA-QLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + A+ D+P+T+K RTG A N ++ + + G ALTIHGR+R ++ A+++ Sbjct: 481 MNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEY 540 Query: 186 IRAVKQKV----------SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 I+ + +P+ NGD +D +G D +M+ R A +PWIF Sbjct: 541 IKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEEMDRSGVDGVMVARGALIKPWIFT 600 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVR-ELHDFYGPAKGYRIARKHVSWYL 287 EI+ + + E + L + +G R+ + L Sbjct: 601 EIKERREWD-----ISAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCEAL 648 >UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=Schistosoma mansoni RepID=C4QMR1_SCHMA Length = 441 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 128/309 (41%), Gaps = 23/309 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + + APM ++ +R L + G LT + M++S + R + E Sbjct: 9 SPKYVLAPMVDGSELAWRMLGRKYGVQLTFTPMINSTAFLINMKYRRSCLQFASEDRPLI 68 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ + P A++ V+ +D+N+GCP R G+ L + +K I++ Sbjct: 69 VQFCANSPDTFVRCAKL-VQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKEIISRA 127 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC--LFNGEAEYDSI 186 ++VPVT KIR + + A+L E G LT+HGRTR G A+++ I Sbjct: 128 SLELNVPVTCKIRI--FSDVERTVQYAKLLEAAGASMLTVHGRTREMKGQKTGLADWNQI 185 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 RAVK+ V IPVIANG+I LD T ADA+M P +F IQ + Sbjct: 186 RAVKEAVKIPVIANGNIQYLSDVHQCLDSTKADAVMSAEGHLHNPALFLGIQPCIYD--- 242 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIED 305 +C +L + Y +I R H+ + ++R + Sbjct: 243 ------------MCFEYLDLVEKYP--TSMQIIRGHIFKLCHHALDEHSEYRSLIGTSQS 288 Query: 306 ASEQLEALE 314 E L+ Sbjct: 289 TKGIKEILQ 297 >UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME Length = 604 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 10/286 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R +L+ +P+ + + PFR +C E GA +T EM + P + + Sbjct: 253 VDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLKGMGQEWALTKRHQSED 312 Query: 66 IRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + VQ+ G++P + AA++ E+ ID+N+GCP + ++ GSAL++ ++++ Sbjct: 313 VFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILELT 372 Query: 125 LTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 + D +P T+K+RTG + E+ L E+ G A+T+HGR+R + A + Sbjct: 373 VRSCAALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRYTKHANW 432 Query: 184 DSIRAVKQKVSI-PVIANGDITDPLKARAVLDY-TGADALMIGRAAQGRPWIFREIQHYL 241 I K PVI NGDI ++MIGR A +PWIF+EI+ Sbjct: 433 AYIEECAAKAKCMPVIGNGDILSYEDYMERRTLAPHVCSVMIGRGALIKPWIFQEIKEKQ 492 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWY 286 + +L + +G KG R+ + + Sbjct: 493 AWS-----PSSGQRYEMLQKFCNYGLEHWGSDTKGVETTRRFLLEW 533 >UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamiellales RepID=Q010A0_OSTTA Length = 639 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 12/290 (4%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + + ++ AP+ + + PFR +C ++GA +TVSEM ++ + K + Sbjct: 264 SLEFKGKIYVAPLTTVGNLPFRRICTDLGADITVSEMAMASNLLKGDRKEWALVRRHPIE 323 Query: 65 GIRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +QI G P M A + E ID+NMGCP V K AG +L++ D +K Sbjct: 324 KCFGIQICGGYPDLMTRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDTDRLKR 383 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHR--NCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 ++ + + PVT+K+R G+ + +I A+ G A T+HGRTR ++ A Sbjct: 384 VVRSMTSVSSTPVTIKLRMGYFDDPSRYVAHDIISKAKSWGAYAATLHGRTREQRYSRLA 443 Query: 182 EYDSIRAVKQKV---SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ I ++P+I NGD+ + MIGR A +PW+ EI+ Sbjct: 444 DWSYIHRCADASALNNLPLIGNGDVYTYQDWNEQIANEKISTCMIGRGAIIKPWLMTEIK 503 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E L V + +G + G R+++ ++ Sbjct: 504 EQRHWD-----ISANERLDLFKDFVHYGLEHWGSDSVGVEKTRRYLLEWM 548 >UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota RepID=Q7PVV7_ANOGA Length = 599 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 135/323 (41%), Gaps = 18/323 (5%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R++L +P+ + + PFR +C E G +T EM + P + + + Sbjct: 246 IVFRDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACAIPIINGAIQEWALTKRHSSED 305 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + VQ+ G +PK + AA+I E ID+N GCP + + GSALL+ +V+K + Sbjct: 306 LFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALLRRQNVLKVM 365 Query: 125 LTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + + T+K R G E+ ED G +TIHGRT+ + A Sbjct: 366 VQSCSRLLADYGKEFTVKTRIGIYNNKLIAHEMVPKFEDWGASLITIHGRTKEQRYTKRA 425 Query: 182 EYDSIRAVK-QKVSIPVIANGDITDPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQH 239 +++ ++ Q S+PV NGDI + +M+GR A +PW+F+EI+ Sbjct: 426 DWEYLQQCATQAQSVPVFGNGDIFGYEDYEHIRTKCPNIAGVMVGRGALIKPWVFQEIKE 485 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWY---LQEHAPNDQ 295 E +L +V + +G KG R+ + + L + P Sbjct: 486 RKTLD-----PSSGERFEMLKRYVNYGLEHWGSDTKGVETTRRFLLEWQSFLYRYVPYGL 540 Query: 296 FRR---TFNAIEDASEQLEALEA 315 R N DA + LE Sbjct: 541 LERPPQRINERPDAYRGRDDLET 563 >UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=Micromonas RepID=C1E909_9CHLO Length = 353 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 130/315 (41%), Gaps = 8/315 (2%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + APM ++ FR LC GA + M+ + V + + Sbjct: 34 SPKFHVAPMVDQSELAFRELCRRHGATCAYTPMIHARLFVEDLKYRKEIFTTHINDRPLL 93 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ +DP + AA I V +DIN GCP + R G+ L+ + V +++ ++ Sbjct: 94 VQFCANDPDMLLKAASI-VAPHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHNLINKL 152 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE--AEYDSI 186 + VPVT KIR + + A++ E G Q + +HGRTR + A + I Sbjct: 153 DKHLSVPVTAKIRV--YDDLETSLKYAKMVEAAGAQLIAVHGRTREQKRAADVRANWAFI 210 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 R +K+++ +PV+ANGDI +A L+ TGAD ++ P +F + Y + Sbjct: 211 REIKKQLKVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENPSLFSDPPLYSPSDPA 270 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIED 305 P +V L E+ Y R+ + HV + R N Sbjct: 271 HPLPVEGDVNCELLHEYLEITRTY--QTPLRMVKGHVHNMVGSWLKEFTDLRDWLNKTPH 328 Query: 306 ASEQLEALEAYFENF 320 + ++ L+A+ + Sbjct: 329 SEMTVDKLQAWTKEL 343 >UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54ES7_DICDI Length = 344 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 79/308 (25%), Positives = 149/308 (48%), Gaps = 26/308 (8%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 I APM + PFR L + G +T + M+ + + S+ +R I++ + Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCDITYTPMIMA-AEFNRSEAARDSDFTINKLDEPLIVQF 116 Query: 73 G-SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G ++ +E+ AA V+ Q IDIN GCP + V ++ G+ LL +P+ + ++ ++ N Sbjct: 117 GVNNAEELVSAAEK-VKDYCQGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINNR 175 Query: 132 VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 V +P+++KIR + ++ E+A+ AE G+ +T+HGRT A + +YD+I+ VK Sbjct: 176 VPIPISIKIRV--QSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHPVDYDAIKLVKD 233 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 V++PV ANGD+ ++ + + TG + +M R P +F+ P Sbjct: 234 NVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQG----------YDKTP 283 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYR--IARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 + +K + + Y G I +H+ + L E+ ++ + FN + S Sbjct: 284 IECIKDFI--------NIYSEYGGLHPVIFHRHLMYMLYEYHNKNE-KSEFNKLSTISGI 334 Query: 310 LEALEAYF 317 ++ + F Sbjct: 335 MDYINDKF 342 >UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AII6_SEBTE Length = 309 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 165/307 (53%), Gaps = 7/307 (2%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++I APMAGITD FR + YE + +EM+ N + + +++ ++ + G VQ Sbjct: 2 QIITAPMAGITDYSFRKILYEFSPDIIFTEMVDVNALKYSNQRTQDEILR--KAGNEAVQ 59 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I G+ ++ +A ++ +E G IDIN+GCP KK+ R GSALL D VK +L ++ Sbjct: 60 IFGNKNEDFLEAVKLLIERGFDHIDINLGCPVKKIIRAGKGSALLLESDFVKELLLKLKK 119 Query: 131 AV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 D+ +++KIRTG+ + E +LAE+ G+ + IHGRT+ L++G+A+++ I+ Sbjct: 120 EFRNDIKLSMKIRTGY-KNFSDPEYYVKLAEEYGLFQICIHGRTQEQLYSGQADWNIIKK 178 Query: 189 VKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG-EL 246 +KQK ++ +I NGD+TD + D D +M+ R G PW+ +E + Y TG Sbjct: 179 MKQKHKNVKIIGNGDLTDLKTIKEKTDSAKPDGIMLARGLLGNPWLLKEAKDYFKTGVFH 238 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 + E+K L H+ + G + RKH+ WYL+E ++ + + Sbjct: 239 ESEVGREEIKNTLIKHINYCIEDKGEIRANLDMRKHIFWYLKEFENIEKIKNDIIKTKTI 298 Query: 307 SEQLEAL 313 + L+ + Sbjct: 299 KDVLKYI 305 >UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Metazoa RepID=DUS4L_HUMAN Length = 317 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 136/306 (44%), Gaps = 21/306 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + APM + FRTL + L + M+ + V VQ A Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 +D + ++DAARI V A IDIN GCP + + G+ L+ P++V+ ++ +V N V Sbjct: 90 ANDARLLSDAARI-VCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQV 148 Query: 133 DVP-VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 + P ++ I+ + + ++ Q AE G+ +T+HGRT YDSI+ +K+ Sbjct: 149 ETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQ-PVHYDSIKIIKE 207 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 +SIPVIANGDI +A V TG D +M+ R P +F E P Sbjct: 208 NMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY-------EETPLKC 260 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 + + + F+ +H+ Y+ E + Q +R FNA+ S ++ Sbjct: 261 IWDWVDIALELGTPYMCFH----------QHL-MYMMEKITSRQEKRVFNALSSTSAIID 309 Query: 312 ALEAYF 317 L ++ Sbjct: 310 YLTDHY 315 >UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga lettingae TMO RepID=A8F480_THELT Length = 305 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 98/304 (32%), Positives = 155/304 (50%), Gaps = 16/304 (5%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAGIT+R FR +C GA + +EM+S+ V + K+ RM+ DEP + VQ+ G+DP Sbjct: 1 MAGITNRAFRKICTFWGAQFSFTEMISAESVVR-NFKTVQRMLPKDEPNV-AVQLFGNDP 58 Query: 77 KEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPV 136 K +A AA+I VE A IDIN CP KKV +K +G ALL + ++ I+ V ++V PV Sbjct: 59 KTLAQAAKI-VEPYAAWIDINAACPVKKVIKKNSGGALLNDLERLEKIIGSVKSSVQKPV 117 Query: 137 TLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIP 196 T+KIR G+ E ++I G + +HGRT ++G+A +D + Q I Sbjct: 118 TVKIRIGF--EKNILDQIVHSCIKAGADGIEVHGRTVVQKYSGKAFWDL--KLSQ-YGIS 172 Query: 197 VIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVK 256 +GDI + L+ +GA++ +I R A +PWIF +I + E+K Sbjct: 173 TAVSGDIFEAEDFHKALEMSGANSALIARGALRKPWIFAQITQKRT-------PKITEIK 225 Query: 257 RLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAY 316 H++ + G + R+ V+ Y +FR F + + +A+E + Sbjct: 226 ETFTKHLKMQIEDEGE-RSIYKMRQFVAGYTHGMRGAREFREKFMKLNKPEDMEKAIEEF 284 Query: 317 FENF 320 F +F Sbjct: 285 FNSF 288 >UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota RepID=B9HRE5_POPTR Length = 362 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 127/287 (44%), Gaps = 10/287 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R +L AP+ + + PFR +C +GA +T EM + + Sbjct: 11 IDFRGKLYLAPLTTVGNLPFRRVCKALGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 70 Query: 66 IRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + VQI G+ P + I+ E IDINMGCP V K AGS+LL P +KSI Sbjct: 71 LFGVQICGAYPDTVTRTVELIDQECTVDFIDINMGCPIDIVVNKGAGSSLLTKPMRMKSI 130 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + V+ P+T+K+RTG+ + + G A+TIHGR+R ++ A++D Sbjct: 131 IEATSGTVEKPITVKVRTGYFEGKSRIDSLIVDIGKWGASAVTIHGRSRQQRYSKLADWD 190 Query: 185 SIRAVKQKV--SIPVIANGDITDPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQHYL 241 I +K S+ V+ NGD+ + D + MI R A +PWIF EI+ Sbjct: 191 YIYQCARKAPDSLQVLGNGDVFSFVDWNNHKSDCPELSSCMIARGALIKPWIFTEIKEQR 250 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L +VR + +G KG R + +L Sbjct: 251 HWD-----ISSGERLNILKDYVRSGLEHWGSDTKGVETTRHFLLEWL 292 >UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0F5_DESRD Length = 341 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 145/322 (45%), Gaps = 9/322 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDK-SRLRM 58 + IG L NR + +PM G+T R L ++ G GL +EM S++ + E + S + Sbjct: 13 LAIGDKSLTNRFLLSPMVGVTHVALRRLLHDFGGFGLHWTEMCSASAVLQEDPRISPVFR 72 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 H DE QI GS+P+ MA AAR + G +DINMGC V ++ AG+ALL+ Sbjct: 73 FHRDELATLVCQIMGSEPETMAAAARRIQDEGFFGVDINMGCCVAAVRQQGAGAALLRDI 132 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +I+ V AVD+P+ +K+R+GW + A+ G AL +H R Sbjct: 133 SRAAAIVDAVRQAVDIPLFVKLRSGWTDQGPVVVHAARACAKAGADALIVHPRLAPDRRT 192 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ IRAV + V +PV NG++ A A+L TG + +GR A RPWI E Sbjct: 193 RPPQWRDIRAVCEAVDLPVFGNGNVFTADDATAMLRQTGCQGIALGRMAAARPWIAAEWL 252 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 + P ++ V L + + R+ RK ++++ A + R Sbjct: 253 GHFHPAPETYP-------KVAQRMVELLWTSFPEGQALRLYRKFMNYFAANFAFGHRLRS 305 Query: 299 TFNAIEDASEQLEALEAYFENF 320 + + + + Sbjct: 306 DLTRSATPEDLYKEIAHHLTPL 327 >UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5AE6 Length = 474 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 23/309 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R + APM ++ +R L + GA L + M+ ++ + + + E Sbjct: 18 RPTKLVAPMVDQSELAWRMLSRKYGAELCYTPMLHASVFLRDPQYRIDGLASCPEDRPLI 77 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ +DP + +A + + +DIN+GCP R G+ L + ++V ++ Sbjct: 78 VQFCANDPDILTKSA-LLAQDHCDAVDINLGCPQTIAKRGNYGAFLGENWELVTKLIKAC 136 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSI 186 + VPVT KIR + + A++ E G Q LT+HGRT+ G A ++ I Sbjct: 137 HEKLSVPVTCKIRI--FTDVEKTVQYAKMIERAGCQLLTVHGRTKEMKGPMTGLASWEHI 194 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 +AVK V IPV ANG+I ++ TG D +MI P +F + + Sbjct: 195 KAVKDAVKIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCLFVGKKTII----- 249 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTFNAIED 305 + +++ + PA AR HV + + R + +D Sbjct: 250 ---------WEIALEYLQCAVKYPCPA---SYARGHVFKICHHGLQRHTRARDLLASSKD 297 Query: 306 ASEQLEALE 314 + A+E Sbjct: 298 IQDMKTAVE 306 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 142/323 (43%), Gaps = 28/323 (8%) Query: 7 QLRNRL-IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWES----DKSRLRMVHI 61 L+ + APM G ++ +R L GA + +EM++ + + I Sbjct: 6 NLKKPYKVLAPMVGNSELAWRILARRYGADICYTEMVNCDTFIRSKINPLSNRWYTTNKI 65 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 D P I +QI G+D +M + I E IDIN+GCP + + GS L+ V Sbjct: 66 DRPLI--IQICGNDVNKMLKVSLILQE-YCDAIDINLGCPQEIARKGNYGSFLMDDLLKV 122 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNG 179 K I+T + N + VPVT KIR E A++ E G + LT+HGRTR G Sbjct: 123 KEIVTVLSNNLKVPVTCKIRI--FESIEKSVEYAKMIEQAGCKMLTVHGRTRDQRGLNTG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A +D IRA+K ++IPVI+NG+I + ++YT D +M+ P IF I+ Sbjct: 181 LASWDHIRAIKASLNIPVISNGNIINNSDIDNCVEYTKCDGVMVAETHLYNPLIF--IKR 238 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + T + E + + E + +++ +K + Y +F Sbjct: 239 HSKTNISIYK----EYLNIFLENYNEYDIHTIKSHTFKLLKKFLKQY-------PEFSEH 287 Query: 300 FNAIEDASEQL---EALEAYFEN 319 N + + + + LE + ++ Sbjct: 288 INLCKTLKDYINLCDVLETFIKD 310 >UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91_ARATH Length = 423 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 78/301 (25%), Positives = 126/301 (41%), Gaps = 14/301 (4%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R + I APM ++ PFR LC + GA + M+ S E Sbjct: 87 RPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKEDRPLF 146 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ +DP + +AA+ VE +DIN+GCP + R G+ L+ +VKS++ ++ Sbjct: 147 VQFCANDPDTLLEAAKR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 205 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR--ACLFNGEAEYDSI 186 ++VPV+ KIR P + + A++ ED G L +HGRTR A++ +I Sbjct: 206 AQNLNVPVSCKIRI--FPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWSAI 263 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + VK + IPV+ANG++ + TG + ++ P F + T E Sbjct: 264 KEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFR----TAEW 319 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGY----RIARKHVSWYLQE-HAPNDQFRRTFN 301 + ++ + + R+ R HV L E + Q R N Sbjct: 320 AKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIHPQVREQLN 379 Query: 302 A 302 A Sbjct: 380 A 380 >UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=Desulfovibrio RepID=Q72EB7_DESVH Length = 332 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 145/315 (46%), Gaps = 4/315 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESD-KSRLRM 58 M++G L AP+AG+ FR + +G GL + M ++ E+ +S Sbjct: 1 MQVGARTAPGSLWLAPLAGVGHVAFREVIDNLGGCGLLFTGMCNARAVPTENPARSNAFT 60 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 +E Q+ G+DP EMA+AAR G +DINMGC + R+ G+ LL+ Sbjct: 61 WRAEELERCVCQLFGADPSEMAEAARRVEAEGFFGVDINMGCSVAAIVRRGCGADLLRDE 120 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AVD PV +K RTGW+P+ + +A+ ED G AL H R Sbjct: 121 ERAVRMVESVRRAVDCPVLVKFRTGWSPDPQGAVALARRFEDAGADALVFHPRVAPDRRT 180 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 IR VK+ V+IPV+ NG++ P A ++L+ TG D + +GR A GRPW+F Sbjct: 181 RPPLRHHIRLVKEAVAIPVLGNGEVFTPGDAASMLETTGCDGISLGRIALGRPWVFAAWT 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 +D P ++ L + H R+ +K + +++ + R Sbjct: 241 GLVDDNPASNPDLWRDIPLALLDALERRHA--DRKYAARLFKKFLLYFIANFTYGNSLRG 298 Query: 299 TFNAIEDASEQLEAL 313 +D ++ AL Sbjct: 299 PMLKGDDPADLRTAL 313 >UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax=Trypanosomatidae RepID=Q582L4_9TRYP Length = 528 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 85/319 (26%), Positives = 126/319 (39%), Gaps = 16/319 (5%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 N+L+ AP+ + + PFR +C E GA +TV EM + + I Sbjct: 164 FSNKLVLAPLTTVGNLPFRRVCKEYGADITVGEMAIVHNLNRLQKSEWSLLRRHSSEDIF 223 Query: 68 TVQIAGSDPKEMADAARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYP-DVVKSI 124 +QIA S P + A+ ESG +DIN GCP KV G L + + ++ + Sbjct: 224 GLQIAVSRPHDAITWAQAVEESGFSYDFVDINCGCPVDKVVLSGCGCGLWERKGNRLRDV 283 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + +V PVT+K R G E+ + E G A+TIHGR+R + A + Sbjct: 284 VQSLVAHQSKPVTIKCRMGPDEENPELHKHIADYETWGAAAVTIHGRSRRQRYTKLANWS 343 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYT-GADALMIGRAAQGRPWIFREIQHYLDT 243 I S+PVI NGDI + + MIGR A +PWIF EI+ Sbjct: 344 YIDNCASLTSLPVIGNGDIFSCEDIVEHRAQSKNVSSFMIGRGALVKPWIFEEIKTGRVW 403 Query: 244 GELLPPLPLAEVKRLLCAHVR-ELHDFYGPAKGYRIARKHVSWYLQ---EHAPNDQFRR- 298 + E +L L + +G R+ + +L + P R Sbjct: 404 D-----ISSHERFEMLRRFCNFGLSHWGADERGVLNTRRFLCEWLSFLCRYVPVGLLERP 458 Query: 299 --TFNAIEDASEQLEALEA 315 N E + LE Sbjct: 459 PQRINERPPYYEGRDELET 477 >UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella RepID=Q5ZRM0_LEGPH Length = 329 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 93/316 (29%), Positives = 149/316 (47%), Gaps = 10/316 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG +L +RLI P+AG + PFR L VSEM S+ + + + Sbjct: 10 LQIGSLKLPHRLIQGPLAGYSCAPFRDLFNIYTPPAYCVSEMCSAIDILHKHSSQSRYIY 69 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 QI+G++P +A+AA GA +IDIN GCP K+ +K AGSALL+ P Sbjct: 70 RAPTEKFLAYQISGNEPHVLAEAAAKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQ 129 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + +I++ V A+ +P+T+KIR + +A+ ED G AL +HGR ++ Sbjct: 130 KLIAIISRVRAAISIPLTIKIRIQNNEKDLT---LAKQIEDAGAHALIVHGRRWTEDYDI 186 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + I +K V+IPVI NGDI + R L+ + D MI RA G+PW++R++ + Sbjct: 187 PCNWQQIANIKNAVNIPVIVNGDINNIFSLRKALEISACDGFMISRAGTGKPWLYRDLLN 246 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + E +L H+ L K ++ V +Y ++ Q + Sbjct: 247 LETND-----VAFDEKLKLFMLHLEGLSCLENEYKAVLQSKSLVRYYFKKQLNEQQL-QQ 300 Query: 300 FNAIEDASEQLEALEA 315 F + E + L Sbjct: 301 FYQLGSLMEIKDFLAE 316 >UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synthase 1-like n=2 Tax=Eumetazoa RepID=UPI000180C543 Length = 626 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 74/304 (24%), Positives = 128/304 (42%), Gaps = 23/304 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWES--DKSRLRMVHIDEPGI 66 + + APM ++ P+R L GA L S M S+N V + ++ + E Sbjct: 14 SPKFVVAPMVDQSELPWRLLSRRHGAQLCFSPMYSANTFVHDHTYRNKVVQDLSSTEDHP 73 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQ + + +A+++ VE + +D+N+GCP R G+ L + D++ I++ Sbjct: 74 LIVQFCSNSAENFLEASKL-VEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIEIIS 132 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYD 184 + + VT KIR E + AQ+ E G +T+HGRTR G A +D Sbjct: 133 TTKQHIGIGVTAKIRV--FNEIDKTVKYAQMLETAGCDIITVHGRTREQKGPNTGLASWD 190 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I+AVK V IPV ANG+I ++ TG D +M+ P IF+++ + Sbjct: 191 HIKAVKDNVDIPVFANGNIQYYCDIMRCMETTGVDGVMVAEGNLTNPMIFQDLSTPCN-- 248 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW-YLQEHAPNDQFRRTFNAI 303 V ++ + + + P AR H+ + + + R + Sbjct: 249 ----------VYDVVEEYFALVAQYPCP---LSSARSHMFRIWARTLLIHKDMRERIGSA 295 Query: 304 EDAS 307 + Sbjct: 296 NNID 299 >UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K738_THENN Length = 273 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 147/280 (52%), Gaps = 11/280 (3%) Query: 41 MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGC 100 M+S+ + S+K+R ++ E VQI GSDP+E++ AA + + ID+N GC Sbjct: 1 MVSAKGFLMNSEKTR-ELLPSPEEKNVAVQIFGSDPEELSRAADVLSDEYP-WIDLNAGC 58 Query: 101 PAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED 160 P +KV +K AG LL+ D+ ++++ E+ V T+K R GW + +I ++ + Sbjct: 59 PVRKVVKKGAGGGLLRDLDLFRAVVKELRKHVKGKFTVKTRLGWNENQIS--KIYEILVE 116 Query: 161 CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADA 220 G+ + IH RT A F G+A++ S+ + + IP +GDI P A+ L+ +G Sbjct: 117 EGVDEVFIHTRTVAQAFTGKADWKSLSVLDK--KIPTFVSGDIFSPEDAKRALEESGCHG 174 Query: 221 LMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR 280 +++ R A GRPW+F++I+ +L+ G+ P E+ R H+ L + G K + + Sbjct: 175 VLVARGAIGRPWLFKQIKDFLERGKYSEP-STDEILRSFEMHLSLLVEDKGEEKAIKEIK 233 Query: 281 KHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 K V+ Y + +FR I++ L+ L+ F NF Sbjct: 234 KFVAGYTKNLKGARRFRDEMMKIKN----LQTLKEMFYNF 269 >UniRef50_A8J121 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8J121_CHLRE Length = 368 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 8/305 (2%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAGI+ P+R L GA + SEM+ ++ + ++ ++R D+ +R+VQ+ G P Sbjct: 1 MAGISSAPYRRLATSHGAAMATSEMVIASTLLVKNRRTRKLASFADDERVRSVQLYGVKP 60 Query: 77 KEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDV- 134 +++ A R+ V E G Q +D+N GCP +K+ + GSAL P + ++ V Sbjct: 61 EQLEQAVRLLVCEHGVQHVDLNFGCPVRKITARGGGSALPLRPRLFAKLVAAAVAGAGGE 120 Query: 135 -PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 PVT+K R G PE + ++AE G AL +H RT L+ ++ ++RA+ + V Sbjct: 121 APVTVKFRVGLTPELPTHLQAGRIAEAEGAAALVLHARTADQLYASPVDWAAVRALVEAV 180 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLA 253 IPV+ NGD+ + A +L TG +M+GRAA GRPW+F E+ L PP L Sbjct: 181 RIPVVGNGDVFEGADALRLLRETGCAGVMVGRAAVGRPWVFDEVAAALTGAPPPPPPRLG 240 Query: 254 EVKRLLCAHVRELHDFYG-----PAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 EV H D+Y RK + YL + A E + Sbjct: 241 EVVAAALRHAEMEVDWYRGYHDSERDTLLRFRKFIKLYLLGFNSTGSLQSCLFAAETLEQ 300 Query: 309 QLEAL 313 A+ Sbjct: 301 WRAAV 305 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 79/296 (26%), Positives = 125/296 (42%), Gaps = 11/296 (3%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 R APM ++ FR LC GA L + M+ + V R Sbjct: 16 PRYHVAPMVDQSELAFRELCKRYGATLGYTPMIHARLFVESPKYRREIFSTSTRDRPLLA 75 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q +DP+ + AA + + +DIN GCP + R G+ L+ V++++ ++ Sbjct: 76 QFCANDPEILLRAATM-IAPYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIRKLD 134 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE--AEYDSIR 187 + VPVT KIR + + A++ E G Q + +HGRTR + A + IR Sbjct: 135 EELPVPVTAKIRV--YDDLETTLKYAKMVEAAGAQIVAVHGRTREQKRCADIRANWAYIR 192 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 A+K + +PV+ANGDI +ARA L+ TGAD ++ P +F + Y + Sbjct: 193 AIKDALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALFSDPPFYAAPTDGY 252 Query: 248 PPLPLAEVK--RLLCAHVRELHDFYGPAKGYR-IARKHVSWYLQEHAPNDQFRRTF 300 P+PL V L+ + + R K V ++ E R F Sbjct: 253 APIPLDGVAAVDLMIEYFDICKSYTTSFSYIRGHVWKLVGHWMSEF---TDLRDEF 305 >UniRef50_B9CKJ9 tRNA-dihydrouridine synthase B n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKJ9_9ACTN Length = 361 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 7/310 (2%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 N ++ APMAG++D +R L GA L +EM+S + +K+ + +D Sbjct: 37 HNPVLMAPMAGVSDGAYRLLARAGGAALAYTEMVSVAGIHFGGEKTWQLVYPLDPEPDIA 96 Query: 69 VQIAGSDPKEMADAA-RINVESGAQI--IDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ GS P++ +AA +I G ++ IDINM CP KV +K GSALL P I+ Sbjct: 97 VQLFGSKPEQFREAASQIAERLGPKLALIDINMACPVPKVVKKGEGSALLDNPVRAAEIV 156 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 ++ VDVPVT KIR G E A+ E G A+T+HGR + L+ G+A+++ Sbjct: 157 RACISEVDVPVTAKIRRGRTVGSECAPEFARALEAAGAAAVTVHGRFASQLYQGKADWNC 216 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 + V VSIPVI +GD+ A VL TG A+M+ R G PWIF + E Sbjct: 217 VERVVCAVSIPVIGSGDVMSAHDAARVLKTTGISAVMLARGTYGDPWIFANTRRACAEKE 276 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 L P + + L A +H AR +WY + +R Sbjct: 277 LFCPT----LSQRLSAFKLHVHLLEAAHIHIARARSLSTWYFRGVPHAAYWRGRSVRCVT 332 Query: 306 ASEQLEALEA 315 AS+ + + Sbjct: 333 ASDFIRLADE 342 >UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7AQM0_BABBO Length = 355 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 120/276 (43%), Gaps = 11/276 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R R +AAPM ++ PFR LC LT + M+ V + D+ Sbjct: 11 RPRYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKYRAVHFQTSDDDRPLI 70 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q+ G D + AAR+ + +D+N+GCP GS LL PD+V I++ V Sbjct: 71 AQVCGDDAGTITQAARLL-KGHVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSRV 129 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSI 186 V + VT KIR ++ + E G +ALT+HGR R+ G A++D+I Sbjct: 130 TREVGIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSEKGTNVGAADWDAI 189 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI--------Q 238 R +K ++ IPVIANG I L YTGADA+M + RP++F I Sbjct: 190 RIIKSRLRIPVIANGGIETFADVERCLSYTGADAVMSSESLLERPYLFSGITYDHLDIMD 249 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAK 274 YL P ++ + + + + Sbjct: 250 EYLGIVRRYPDQSPCCIRGHAFKILFQHCQRHPEIR 285 >UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genome shotgun sequence n=4 Tax=Intramacronucleata RepID=A0EG06_PARTE Length = 360 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 121/308 (39%), Gaps = 23/308 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + I APM ++ FR L + G L + M+ S E Sbjct: 17 SPKFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSRIMTESKSYKDEFFTTCPEDRPLF 76 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q+ G DP+ + AA + + IDIN+GCP + L G+ LL+ + V +I+ E+ Sbjct: 77 AQLCGHDPQVLIKAALMIQDQ-CDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIVKEL 135 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSI 186 ++VPVT KIR + + ++ + ++ G LT+HGRT+ F G+ ++ I Sbjct: 136 KQNINVPVTCKIRM--FKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQCDWTII 193 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR-EIQHYLDTGE 245 +KQ + IPV ANG I L T DA+M A P +F EI+ Sbjct: 194 AEIKQILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSGEIK------- 246 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 L ++ ++ + K + R + + Sbjct: 247 -----DLNDLALEYMQFAKQYNARLAEIKAHL-----FKLLYTGLQIFTDLRSKLGSAKT 296 Query: 306 ASEQLEAL 313 E LE + Sbjct: 297 YEEHLEVV 304 >UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=Proteobacteria RepID=B3PD21_CELJU Length = 321 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 87/308 (28%), Positives = 140/308 (45%), Gaps = 11/308 (3%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQ------VWESDKSRLRMVHIDE 63 R++ APM G+ + R + +G V+E + Q ++ + Sbjct: 2 RIMLAPMEGVVEHHVRDILTRLGGLDGCVTEFIRVTDQKLPYKVFYKYAQELENHCQTPN 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ GS P+ MA A+ V GA+ ID+N GCPAK VN G+ LL+ PD V S Sbjct: 62 GTPVKVQLLGSKPEPMALNAQELVRYGAKAIDLNFGCPAKTVNSHEGGACLLRTPDRVYS 121 Query: 124 ILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ V +AV +PV+ KIR G+ + + E AQ E G LT+H R++A + A Sbjct: 122 IIKAVRDAVPRAIPVSAKIRLGF-EDRTSYMENAQAVEAAGADELTVHARSKADGYKPPA 180 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 + I +K + IPVIANG+I + + +M+GR P + R+I+ YL Sbjct: 181 YWHYIADIKAALKIPVIANGEIWSVEDYLRCREQSQCADVMLGRGLLSCPDLARQIKAYL 240 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 GE PL EV ++L + R Y ++ + + +++ + F Sbjct: 241 A-GEEYRPLTWGEVCQILFDYYRLTTPLYETRNCGNRVKQWLMYLSRQYPEANVFFEAVK 299 Query: 302 AIEDASEQ 309 ++ Sbjct: 300 RKTTPADI 307 >UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X346_9BACT Length = 355 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 143/278 (51%), Gaps = 10/278 (3%) Query: 14 AAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG 73 APM ++ P+R LC E+GA +TVSEM + + + + VQ+AG Sbjct: 1 MAPMTKGSNLPYRRLCVELGARITVSEMTLARRLKQKRNSEFALIRRFPGEPCFGVQLAG 60 Query: 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV- 132 + P E A AA + GA +DIN GCP RK G+++ + P ++ ++ + +V Sbjct: 61 NKPDETAWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVEAIKGSVT 120 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 ++PVT KIR GW + RN + AQ A D G AL +HGRTR + A++D+I + Sbjct: 121 NIPVTAKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTRNARYRFAADWDAIARIVAA 180 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE-IQHYLDTGELLPPLP 251 V +PVI NGD+ P + A + +G A+M+ RAA +PWIFRE + Y D + Sbjct: 181 VPVPVIGNGDLLFPHEIAAARERSGCAAVMVARAALIKPWIFREAVDGYWD-------IT 233 Query: 252 LAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQ 288 E L +V + +G G R ++W+L+ Sbjct: 234 AEERVGLYRRYVTLAREHWGDDEHGLARIRTFLNWHLE 271 >UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AKJ6_DESPS Length = 354 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 138/309 (44%), Gaps = 3/309 (0%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 L APM G++ R+L ++G GL +EM+++ E+ + Sbjct: 42 PPLSLAPMVGLSHSALRSLIADLGGCGLFYTEMLAARRLPHENPAVSSYLHTTPCERPLI 101 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q+ +D K +A A G +DIN+GCPA V R AG+AL + D V+ I++ Sbjct: 102 YQLFIADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSA 161 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 D+ ++ KIR G + + + ++ E G+ L +H R F + + + Sbjct: 162 RRHTDLTLSAKIRVGHVGKEAHLLDFCKMLEAEGVDLLAVHARYHGEKFCRKPRWQLLAP 221 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 + +++ IP+ ANG I AR L+ +GA LM+GR A RPW+F EI + +L Sbjct: 222 ICEQLDIPIFANGGIFSVDDARRCLELSGAAGLMLGRGAVERPWLFNEIAREVYGLDL-- 279 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P+ + + V+++ + + P + ++ + + H E Sbjct: 280 PVAESRPVEIYFRFVQKMVEIFAPERQLGRIKEFTHYIAKNHQFGHHLASAVQKSHTVEE 339 Query: 309 QLEALEAYF 317 ++A E ++ Sbjct: 340 AVQAAEDFY 348 >UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypanosoma cruzi RepID=Q4DCG2_TRYCR Length = 529 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 11/286 (3%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 +N+L+ AP+ + + PFR +C GA +TVS M + + + + Sbjct: 168 FKNKLVLAPLTTVGNLPFRRVCKSYGADITVSSMSLVHNLNRLQKGEWSLLRRHESEDVF 227 Query: 68 TVQIAGSDPKEMADAARINVESGA--QIIDINMGCPAKKVNRKLAGSALLQYPD-VVKSI 124 +QIA S P+ A+ SG IDIN GCP + + G L + D ++ I Sbjct: 228 GLQIAVSQPQSAQTWAKAIEASGYSYDFIDINCGCPVQMIMSAGCGCGLWERRDNRLRDI 287 Query: 125 LTEVVNAVDVPVTLKIRTG-WAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 ++ +V PV++K R G A + E E G A+TIHGR RA + A + Sbjct: 288 VSSLVQHQSKPVSIKCRIGAGANSSASLHEKIGDYEGWGADAVTIHGRFRAQRYTKLANW 347 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLD-YTGADALMIGRAAQGRPWIFREIQHYLD 242 + I + + S+PVI NGDI + Y + MIGR A +PWIF EI+ Sbjct: 348 EYIDSCAARTSLPVIGNGDIFSYEDIIDHRERYPHVSSYMIGRGALIKPWIFEEIKQ--- 404 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 E + E +L + +G +G R+ + +L Sbjct: 405 --EQPRDISSQERFEMLRSFCNYGLSHWGSDERGVLTTRRFLCEWL 448 >UniRef50_D1N0Y1 Dihydrouridine synthase DuS n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Y1_9BACT Length = 334 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 5/312 (1%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 N L+ AP++G TD P+R G +EM+ + ++S + E Sbjct: 6 ENALLMAPLSGFTDLPYRRAARAGGCRFAFTEMVDVASLTYARERSAGMLRRGPEEEFLG 65 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ+ G+D + + AA + E ++D N+GCP KV +K AG+ L ++ D + + Sbjct: 66 VQLVGADHEFIRRAADVVNEYEFSVVDFNLGCPVPKVAKKGAGAELGRHLDAALACFAII 125 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 PVT KIR A + +A+ + G QA+T+HGR + ++G + IRA Sbjct: 126 AERSRHPVTAKIRIVDAEDPAPTLALAKGLAELGAQAITVHGRIKEAFYSGPVNFGMIRA 185 Query: 189 VKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 V++ + + VIANG +T +K + + TG +M+ R A G PW+F E L G+ Sbjct: 186 VREALPGVQVIANGGVTGRVKYQEIRRETGCSLVMLARGAMGNPWLFNE----LSLGDAY 241 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 P + E ++ HV + + YG R+ARK + YL+ + + +A+ + Sbjct: 242 VPPDIDEWFGVIREHVEGMIELYGEESAMRMARKILHDYLKGRGFHSVMKALASAVATRA 301 Query: 308 EQLEALEAYFEN 319 + L + Sbjct: 302 DFEAFLARTKQE 313 >UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Magnoliophyta RepID=DUS3L_ARATH Length = 700 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 127/287 (44%), Gaps = 10/287 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R++L AP+ + + PFR LC +GA +T EM + + Sbjct: 343 IDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 402 Query: 66 IRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + VQI GS P ++ I+ E IDINMGCP V K AGSALL P +K+I Sbjct: 403 LFGVQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNI 462 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + V+ P+T+K+RT + + + + G A+TIHGR+R ++ A++D Sbjct: 463 VEVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKSADWD 522 Query: 185 SIRAVKQK--VSIPVIANGDITDPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQHYL 241 I + ++ VI NGD+ L D + MI R A +PWIF EI+ Sbjct: 523 YIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIARGALIKPWIFTEIKEQR 582 Query: 242 DTGELLPPLPLAEVKRLLCAHVR-ELHDFYGPAKGYRIARKHVSWYL 287 + E ++ VR L + KG R + +L Sbjct: 583 HWD-----ITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLEWL 624 >UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine synthase 4-like (PP35) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179183B Length = 350 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 69/303 (22%), Positives = 127/303 (41%), Gaps = 23/303 (7%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 I APM + FR L L + M+ ++ V + + VQ Sbjct: 20 ICAPMVRYSRLQFRKLIRMYECDLCFTPMIMADCYVKSAKARAHEFQTDTDDRPLIVQFG 79 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 ++ + +A+ + + +D+N GCP + + G+ LL+ P+++K + ++ N + Sbjct: 80 ANNSSDFVNASNLII-PYCDGVDLNCGCPQRWALNEGYGAQLLKNPEIIKDCVRQLRNHL 138 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 T+ ++ +HR ++ Q E G+ +T+HGRT N + + ++ + + Sbjct: 139 PTNKTISVKLRLLDDHRQSVDLCQQIEATGVSFITVHGRTALQK-NEPIDQECLKLINES 197 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 VS+PVI NGDI + A + +YTG +M R P +F Q PL Sbjct: 198 VSVPVILNGDIKNLSDAITMQEYTGCRGMMSARGILHNPGLFAGYQT----------TPL 247 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEA 312 + V+ L F+ H+ + + P R+TFN + AS+ + Sbjct: 248 SAVQDWLNIKHTNFLWFH----------HHLVFMCERLLPKTA-RKTFNQLRTASDVVSF 296 Query: 313 LEA 315 LE Sbjct: 297 LED 299 >UniRef50_B6JXB4 tRNA-dihydrouridine synthase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JXB4_SCHJY Length = 347 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 124/309 (40%), Gaps = 21/309 (6%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R IAAPM + PFR L + A + + M+ + + + ++ Sbjct: 19 RPVFIAAPMVRYSKLPFRQLVRDYNADIVYTPMILAKEFL-HPEGRYFDFSTNEKDRSLV 77 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ DP +A A+ I V I IN GCP ++ GSALL+ P V ++ V Sbjct: 78 VQFGVEDPVILAQASEI-VAPYTDAIGINCGCPQPWAIQEGIGSALLKQPQKVHELVRSV 136 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 +A+ ++++ + ++ Q AE G +T+HGR RA + + ++IR+ Sbjct: 137 KSALGETFCVEVKIRLDNDLEKTRQLMQTAERAGADFITVHGRRRADRSSFPVDLEAIRS 196 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V+ VSIPV+ANGD+ D + +YT D +M R P +F Sbjct: 197 VRPCVSIPVVANGDVNDLDTGLKIAEYTNTDGVMSARGLMENPALFAG----------YT 246 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P V++ + +F +H + + R E + Sbjct: 247 STPWGCVEKFVAYATGYSLNF--------QLFEHHLMTMMGKMTTKRERMQV-PSESYAS 297 Query: 309 QLEALEAYF 317 ++ L+ F Sbjct: 298 VIDWLDETF 306 >UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota RepID=DUS3_USTMA Length = 867 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 122/307 (39%), Gaps = 30/307 (9%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R L AP+ + PFR +C G+ + EM + + + + + Sbjct: 486 LNWRGELYLAPLTTTGNLPFRRICTGYGSDIHCGEMGLAESFLHGNAAEWSLVRRHESER 545 Query: 66 IRTVQIAGSDPKEM---ADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 I Q+ G P + A+A + V G +DIN GCP V K AGSALL +P + Sbjct: 546 IFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGCPIDLVFNKGAGSALLDHPTKLS 605 Query: 123 SILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ + + D P+T+K+RTG + + A+ + + A T+HGR+R + +A Sbjct: 606 KIVRGMNAVLGDTPLTIKLRTGTGAKQTTHKIFAKAQTEWRVAAATLHGRSRKQRYKNDA 665 Query: 182 EYDSIRAVK--------------------QKVSIPVIANGDITDPLKARAVLDYTGADAL 221 ++ I + V IPV NGD+ ++ T D Sbjct: 666 DWGYIATCANTLRESVSEWNESSRFADEPEMVPIPVYGNGDVYSWQDYYERIERTHVDGE 725 Query: 222 MIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIAR 280 MI R A +PW+F EI+ D + E ++ +G G R Sbjct: 726 MIARGALIKPWLFTEIKERRDWD-----ISSRERLDMMRKFAEYGLTHWGSDTHGVNTTR 780 Query: 281 KHVSWYL 287 + + + Sbjct: 781 RFMCEMM 787 >UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezia globosa CBS 7966 RepID=DUS3_MALGO Length = 766 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 30/307 (9%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 Q + L AP+ + PFR LC G+ + EM + + + + Sbjct: 391 LQWKGDLYLAPLTTTGNLPFRRLCASFGSDIHCGEMGMAESFLQGHASEWSLVRRWEGER 450 Query: 66 IRTVQIAGSDPKEMADAARINVES---GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 I Q+ G+ P+ + A + G +D+N GCP V K AGSALL + + + Sbjct: 451 IFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDHANKLG 510 Query: 123 SILTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ + A+ +P+T+K+RTG + + A+ + G+ L++HGR+R + +A Sbjct: 511 RIVRGMSEALGEIPLTIKLRTGTTSKPTTHKIFARAQTEWGVGGLSLHGRSRKQRYKNDA 570 Query: 182 EYDSIRAVKQK--------------------VSIPVIANGDITDPLKARAVLDYTGADAL 221 ++ IR V +PV NGD+ L++ D Sbjct: 571 DWAYIRTCVDTLHDAVRTWNEEPQHADEPDMVPVPVYGNGDVYGWRDYYDHLEHAHVDGT 630 Query: 222 MIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIAR 280 MI R A +PWIF EI+ D + E ++ + +G +G R Sbjct: 631 MIARGALIKPWIFTEIKERRDWD-----ISSRERLDMIRQYASYGLTHWGSDTQGVNTTR 685 Query: 281 KHVSWYL 287 + + L Sbjct: 686 RFLCEML 692 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 14/323 (4%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPG-- 65 + R+I APM G+ D R L +G VSE + V S + L+ V G Sbjct: 12 KTRIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTV-HSRATWLKYVPEIANGNK 70 Query: 66 -----IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 TVQ+ GSD MA A V GA ID+N GCPA VNR G+ LL+ P++ Sbjct: 71 TFSGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPEL 130 Query: 121 VKSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + I+ + + +P+T K+R G+ + E A + G LT+H RT+A + Sbjct: 131 IFHIVKTLRERLPAHIPLTAKMRLGYEDKSP-ALECACAIAEGGACGLTVHARTKAEGYE 189 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A ++ IR ++ V IPV ANGD+ + +G +++M+GR A RP + R+I+ Sbjct: 190 PPAHWEWIRKIRDSVDIPVTANGDVFSLQDYIGIKTISGCNSVMLGRGAVIRPDLARQIK 249 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAK-GYRIARKHVSWYLQEHAPNDQFR 297 Y + G + AEV + + K ++ + + P Sbjct: 250 QYENGG-PVKDTDFAEVSKWIRQFFELCLTKEANNKYPIARLKQWLGMMKKTFDPAQTLF 308 Query: 298 RTFNAIEDASEQLEALEAYFENF 320 ++DA E L A+ Sbjct: 309 DRVRTVKDADEVRRILNAFEHEI 331 >UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G230_PHATR Length = 545 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 16/293 (5%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 ++ AP+ + + PFR + + GA +T EM + + + E Sbjct: 183 IDFSKKVYVAPLTTVGNLPFRRIMKKFGADITCGEMAVATNLLSGQSSEWALLKRHPEED 242 Query: 66 IRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQIA P A + E +D+N+GCP V K +G+AL+ ++S Sbjct: 243 IFGVQIAAGYPDVFARTCELIENEMNVDFVDLNLGCPLDIVCNKGSGAALMMRDKRLRSS 302 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDC---GIQALTIHGRTRACLFNGEA 181 + ++ + P+++K+RTGW + Q + GI A+ IHGR+R + EA Sbjct: 303 VEGILETLTCPISIKMRTGWEMTKPFAHNLVQKIQSWGLDGISAVMIHGRSRLQRYAKEA 362 Query: 182 EYDSIRAVKQK-----VSIPVIANGDITDPLKARAVLDYTGADAL-MIGRAAQGRPWIFR 235 ++D I V + +IPVI NGDI + G ++ M+ R A +PW+ Sbjct: 363 DWDYISMVAKSQDMSLTTIPVIGNGDIFSYQDFEEKIAREGVNSCAMLARGALIKPWLPT 422 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 EI+ + +E +L R + +G +G R+ + +L Sbjct: 423 EIKERRHWD-----ISASERLDILKDFARFGMEHWGTDQQGINNCRRFLLEWL 470 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 17/279 (6%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG--I 66 R APM G ++ +R L GA + +EM+ + + S + G Sbjct: 10 RPYFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWYTTSEGDRP 69 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQI G+ P+ M +AA I + ID+N GCP K + G+ L + + I+ Sbjct: 70 LVVQICGNSPEVMLEAALIIQD-HCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIVK 128 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYD 184 + + ++VPV KIR + E E A++ E+ G L +HGRTR G A + Sbjct: 129 VLSSGLNVPVFCKIRVFGSIE--KTVEYAKMIEEAGCSLLAVHGRTRDQRGAAMGFASWK 186 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE-------- 236 IRA+K+ + IPV++NG+I L+YTG D +M+G A P IF Sbjct: 187 HIRAIKENLRIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLIFTGEDRSCLEI 246 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKG 275 I YLD P A+V+ + R L++++ G Sbjct: 247 IGEYLDICMEFPG--SADVRHIKSHMFRLLYNYFSMNPG 283 >UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseriaceae RepID=C5TM05_NEIFL Length = 321 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 147/320 (45%), Gaps = 14/320 (4%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV-------HID 62 +LI APM G+ D R L +G VSE + V S + L+ V Sbjct: 2 QLILAPMQGLVDDVMRDLLTRIGGFDECVSEFVRITHTV-HSRATWLKYVPEIAHANRTT 60 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 TVQ+ GSD + MA A V GA ID+N GCPA VN+ G+ LL+ PD++ Sbjct: 61 AGTPCTVQLLGSDAENMAVNALEAVRFGADKIDLNFGCPAPTVNKHKGGAVLLKEPDLIY 120 Query: 123 SILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I+ + + +P+T K+R G+ + E A E+ G ALT+H RT+ + Sbjct: 121 HIVHTLRQRLPQHIPLTAKMRLGYEDKSL-ALECASAIENGGACALTVHARTKVEGYEPP 179 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A ++ +R ++ V+IPV ANGD+ + + +G +++M+GR A RP + R+I+ Y Sbjct: 180 AHWEWVRKIRDAVNIPVTANGDVFNLQDYLDIKSVSGCNSVMLGRGAVIRPDLARQIKQY 239 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAK-GYRIARKHVSWYLQEHAPNDQFRRT 299 + GE + AEV + K ++ + +E Sbjct: 240 -ENGETVKDTDFAEVSSWIVQFFDLCLAKEASNKYPVSRLKQWLGMMKKEFEQAQVLFDR 298 Query: 300 FNAIEDASEQLEALEAYFEN 319 AI++A E + L ++ + Sbjct: 299 IRAIKEADEVKQILLSFEQE 318 >UniRef50_C2KNM7 Possible tRNA-dihydrouridine synthase n=4 Tax=Mobiluncus RepID=C2KNM7_9ACTO Length = 471 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 145/300 (48%), Gaps = 13/300 (4%) Query: 35 GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQI 93 G+ V EM+++ S++S + + ++++Q+ G +++A AA V G A Sbjct: 118 GMFVGEMVTAKALRMGSERSWVMVKSGPLQAVKSIQLYGVVGEDLAWAAGELVRRGLADH 177 Query: 94 IDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV-----------NAVDVPVTLKIRT 142 ID+N GCP KV RK GSAL ++ VV + VPVT+KIR+ Sbjct: 178 IDLNFGCPVPKVTRKGGGSALPWKTAYFGEVVAAVVAATRVASEDSGRSFPVPVTVKIRS 237 Query: 143 GWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 G EHR ++A++AED G+ A+T+H RT + + G + ++ I A+ + + IPV+ NGD Sbjct: 238 GIDAEHRIFLDVARVAEDNGVAAVTLHARTTSEYYGGHSHWEDIAALVEVLDIPVLGNGD 297 Query: 203 ITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAH 262 + A + TG + IGRA QGRPWIFREI L + L EV + H Sbjct: 298 VFCAADALEMFRETGCAGVEIGRAVQGRPWIFREITAALWGLPVPVGPSLGEVANVARRH 357 Query: 263 VRELHDFYG-PAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA 321 L YG R RKH+ WY + + R +E +E +A E Sbjct: 358 AEGLVAHYGNELVALRDMRKHLGWYFRGFGLGGEMRGRLARVESLAELEQATHELIERLG 417 Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 18/33 (54%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG 33 + +G Q + APMA +T+ PFR LC E Sbjct: 22 LSLGGVQFVTPVALAPMADVTNAPFRDLCLEFS 54 >UniRef50_C7NBC4 Dihydrouridine synthase DuS n=3 Tax=Leptotrichia RepID=C7NBC4_LEPBD Length = 325 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 80/310 (25%), Positives = 148/310 (47%), Gaps = 12/310 (3%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ APMAGITD FR + + +EM+++N E D + ++ D Q Sbjct: 2 KIYTAPMAGITDYSFRKILEKFEPDFLFTEMVNANLLNREDDTTINELLKCDNKEKTGTQ 61 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I G D E+ G + I+INMGCP K+ + AGSALL+ ++V+ +L E Sbjct: 62 IFGGDKNELVSGILKLKNFGFRKININMGCPQPKIVKNGAGSALLENYELVEQVLLET-Q 120 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV- 189 +D +++KIR G+ + N E LA + + +HGRT+ +++G A ++ + + Sbjct: 121 NIDAKISIKIRVGY-KDFDNPEIFLNLANKHNLDFICVHGRTQKQMYSGTANWEIVEKLS 179 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 K +I NGD+ +P + + + D +++ R G PW+ + + +L TG++ Sbjct: 180 KMPRNINFFGNGDLFEPSEIKRKIASCNLDGIILSRGIIGNPWLISQTREFLKTGKINTI 239 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 E K L+ H++ + + G K K + Y Q+ ++ D + + Sbjct: 240 QTFDETKSLVLEHLQNIVENKGEKKAVLEINKFLRPYFQKF---------WDKNLDRNSE 290 Query: 310 LEALEAYFEN 319 + +E +F+ Sbjct: 291 IAVIENFFDE 300 >UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DS92_ZYGRO Length = 406 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 135/313 (43%), Gaps = 21/313 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE-----PGIR 67 I APM ++ +R L + GA L + M + S K R M + Sbjct: 22 IVAPMVDQSELAWRILSRKYGATLAYTPMFHAK-LFATSPKYRKDMWCEMDGDSKIDRPL 80 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQ +DP+ + AAR+ V+ +D+N+GCP + GS L++ D+V ++ Sbjct: 81 VVQFCANDPEYLLQAARL-VQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKLIRN 139 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYDS 185 + +DVPVT KIR PE + A+ D G Q LT+HGR R +G A++++ Sbjct: 140 LHENLDVPVTAKIRI--FPEKEKSLQYARTVLDAGAQFLTVHGRLREQKGQQSGLADWET 197 Query: 186 IRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 I+ ++ + +NG++ P +D DA+M P IF + D Sbjct: 198 IKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSAEGNLYNPGIFN-AEDSQDK 256 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARK-HVSWYLQEHAPNDQFRRTFNA 302 ++ P ++C E+ Y + R A K H+ L+ PN R+ A Sbjct: 257 EKVFP------RVDVICREYFEIVKSYEFSHASRTAMKSHLFKILRPFLPNHTDIRSSLA 310 Query: 303 IEDASEQLEALEA 315 + +A L+ E Sbjct: 311 LLNAKSSLDDYEN 323 >UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomycota RepID=DUS1_YEAST Length = 423 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 136/324 (41%), Gaps = 26/324 (8%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV-----WESDKSRL 56 +IG R I APM ++ +R L GA L + M+ + E + S L Sbjct: 25 KIG----RPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSL 80 Query: 57 RMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQ 116 +D P VQ +DP+ + AA++ VE +D+N+GCP + GS L++ Sbjct: 81 DGSSVDRP--LVVQFCANDPEYLLAAAKL-VEDKCDAVDLNLGCPQGIAKKGHYGSFLME 137 Query: 117 YPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC- 175 D++ +++ + + VPVT KIR + A++ D G Q LT+HGR R Sbjct: 138 EWDLIHNLINTLHKNLKVPVTAKIRI--FDDCEKSLNYAKMVLDAGAQFLTVHGRVREQK 195 Query: 176 -LFNGEAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 G A +++I+ ++ + ANG+I P +++ GADA+M P Sbjct: 196 GQKTGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPG 255 Query: 233 IFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARK-HVSWYLQEHA 291 +F + + ++ P + ++ +K + A K H L+ Sbjct: 256 VFN-VGQTKNKEKIFP------RVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFL 308 Query: 292 PNDQFRRTFNAIEDASEQLEALEA 315 P+ R+ A +A E E Sbjct: 309 PHHTDIRSTLATMNAKATWEEWEE 332 >UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi RepID=A8QBG9_BRUMA Length = 513 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 128/308 (41%), Gaps = 23/308 (7%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 R + APM ++ FR + + GA L S M+ + V ++ R + + VQ Sbjct: 61 RYVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFVTDATYRRTALSTCLDDRPLVVQ 120 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 +DP + +A ++ VES +D+N+GCP R G+ L + ++ ++T + + Sbjct: 121 FCANDPVILLNACQL-VESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLICEMITLLHS 179 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSIRA 188 +P++ KIR + A+ G LT+HGRTR G A++ ++RA Sbjct: 180 HSRLPLSCKIRI--LQDINETVAYARALVKAGACMLTVHGRTREQRGPNTGLADWYAMRA 237 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V V +PV+ANG+I P L+ TGA A+M P++F + +H ++ Sbjct: 238 VVSAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLFEK-RHEVNWTAARE 296 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIEDAS 307 L AE + V R H+ R + + Sbjct: 297 YLDFAERYESTTSAV----------------RAHLFRICHHSLLEYSDLRERLSYVCTTE 340 Query: 308 EQLEALEA 315 + + ++ Sbjct: 341 DFRQIMDD 348 >UniRef50_UPI000186DA49 tRNA-dihydrouridine synthase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DA49 Length = 332 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 131/316 (41%), Gaps = 22/316 (6%) Query: 1 MRIGQYQLRNRLI--AAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM 58 M + + +L+ APM + FR+L + L + M+ ++ + Sbjct: 1 MSVSDLFSKKKLVKVCAPMVRYSKLEFRSLVRQYDCDLCFTPMIMADSFIKSEKARINEF 60 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 VQ A ++ + ++AA++ V + +D+N GCP + + G+ LL P Sbjct: 61 TTSSNDSPVIVQFAANNTFDFSEAAKL-VFPFSDGVDLNCGCPQRWAMKIGIGAQLLSEP 119 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + +K I+ V N + ++ ++ + ++ ++ + E G+ LTIHGRT+ + Sbjct: 120 ETIKDIVLNVKNQISCNYSVSVKLRLLNDIKSTVDLCKKLEKTGVTFLTIHGRTKEQR-S 178 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +I+ + V IP+IANGD+ A+ + TG +M R P +F+ Sbjct: 179 EPVNIAAIKDIVDSVQIPIIANGDVKTLQDAQLLQQLTGCQGVMSARGLLQNPSLFQG-- 236 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 PL VK+ + + F H+ + L++ P + RR Sbjct: 237 --------YNETPLECVKKWVDISLNSNIHF-------TTFHHHLVFMLEKILP-KKIRR 280 Query: 299 TFNAIEDASEQLEALE 314 FN + + + + E Sbjct: 281 KFNCLNNYEDPFKLYE 296 >UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU09_9BACT Length = 334 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 91/330 (27%), Positives = 136/330 (41%), Gaps = 31/330 (9%) Query: 12 LIAAPMAGITDRPFRTLCYEM----GAGLTVSEMMSSNPQVW--ESDKSRLRMVHIDEPG 65 + APM +TD FR + E + SE +S++ DK R + DE Sbjct: 13 IALAPMEDVTDTVFRQILLETAQPKNLQVVFSEFISTDGLCHPIGHDKVIHRFLISDEER 72 Query: 66 IR--------TVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQ 116 Q+ G +P + ++A V+ +DINMGCP K+ ++ SAL+ Sbjct: 73 KLLKEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQGGCSALIN 132 Query: 117 YPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 P++ K ++ A +PV++K RTG H+ E + L E A+ +HGRT+ Sbjct: 133 TPEIAKELVLAAKAATKLPVSVKTRTGITA-HKTEEWMTHLLEVEPA-AIILHGRTQKQQ 190 Query: 177 FNGEAEYDSI---RAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 G A +D I V+ ++ IP NGD+ +A + D MIGR P Sbjct: 191 SEGLASWDEIAKGARVRDRLKPHIPFWGNGDVRSIEQAHQLCQEHKLDGAMIGRGVFHNP 250 Query: 232 WIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA 291 WIF L +LPP E LL H F+G K + R+ Y Q Sbjct: 251 WIFN---TDLLGDNVLPP---EEKIALLWRHASLYTSFWGSQKNFLTLRRFFKIYAQGFP 304 Query: 292 PNDQFRRTFNAIEDASEQLEALEA---YFE 318 + FR + E LE YF+ Sbjct: 305 GANAFRSEIMQTKKLDEVRALLEKHELYFD 334 >UniRef50_UPI00015B403F PREDICTED: similar to MGC79829 protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B403F Length = 346 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 129/306 (42%), Gaps = 20/306 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + APM + PFRTL + + + M+ ++ V S + VQ A Sbjct: 17 VCAPMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFSTNEGDSPLIVQFA 76 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 + + +A + V + +D+N GCP + + G+ LL P +VK +++ V N + Sbjct: 77 AKEVDDFVEATEM-VAPYSNGVDLNCGCPQRWALKDGYGADLLTKPQLVKELVSNVRNRI 135 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 P T+ ++ + + E ++ E G+ LT+H RT + N + DS++ V+ Sbjct: 136 PKPFTVSVKIRILKDIKKTIEFSRAIEHAGVSFLTVHART-PDMRNEPIDLDSLKLVRSC 194 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 V +P+IANG++ A+ + + + + +M+ P IF ++ P+ Sbjct: 195 VHLPMIANGNVRSFEDAKTLYEESKCNGVMVAGGILTNPAIFSGYKN----------TPV 244 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEA 312 ++ L F + H ++ E + + FN + + S+ + Sbjct: 245 ECIQDWLDITSTMSTQF--------MCMHHHLVFMLEKVLTKKEKLVFNVLNNKSDVYDF 296 Query: 313 LEAYFE 318 L+ F+ Sbjct: 297 LKERFD 302 >UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4PG83_USTMA Length = 527 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 137/362 (37%), Gaps = 46/362 (12%) Query: 2 RIGQYQL-----RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR- 55 ++G ++ R + APM ++ +R L G+ L + M+++ E+ K + Sbjct: 36 KMGSWEFYRSIGSPRRVVAPMVDQSELAWRILSRRYGSDLVYTPMINAKLFADENSKKKK 95 Query: 56 -------LRMVHIDE---------------------PGIRTVQIAGSDPKEMADAARINV 87 H +E VQ +DP+ + AA++ Sbjct: 96 VKYQEVNFNREHAEEGASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLKAAKVVE 155 Query: 88 ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPE 147 + +D+N+GCP R GS L++ ++ S++ + + VPVT K+R Sbjct: 156 DR-CDAVDLNLGCPQHIARRGHYGSYLMEDWSLIFSLINILHVNLKVPVTAKMRV--YES 212 Query: 148 HRNCEEIAQLAEDCGIQALTIHGRTR--ACLFNGEAEYDSIRAVKQKVSIPVIANGDITD 205 A+L E G Q +T+HGRTR G A++ IRAVK+ V++PV ANG++ Sbjct: 213 VEKTITYARLLERAGAQIITVHGRTRNMKGHLTGLADWAKIRAVKEAVNVPVFANGNVLY 272 Query: 206 PLKARAVLDYTGADALMIGRAAQGRPWIF--REIQHYLDTGELLPPLPLAEVKRLLCAHV 263 P L TGAD +M P I + P LPL + ++ ++ Sbjct: 273 PQDFYDALAATGADGVMSAEGNLYNPAIMLPNPPKQPSAMFPNAPELPLPSIVKMAHEYL 332 Query: 264 RELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE-----DASEQLEALEAYFE 318 + P + I + R ++++ A+ + Sbjct: 333 DIVCSLRTPTQSSAIKAHLFRLCRPALEVHRDLREQLGKSHFDHTASGADKIVTYRAFVD 392 Query: 319 NF 320 Sbjct: 393 EL 394 >UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosaccharomyces pombe RepID=DUS1_SCHPO Length = 399 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 74/316 (23%), Positives = 128/316 (40%), Gaps = 21/316 (6%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV-- 59 +IG R + I APM ++ P+R L GA L S M S ES+ R ++ Sbjct: 14 KIG----RPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSR-LFGESEDYRNKVFST 68 Query: 60 -HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 I E +Q G+DP+ M AA+I +D+N+GCP + GS L + Sbjct: 69 RTIPEERPLIIQFCGNDPEIMLKAAKIA-APYCDAVDVNLGCPQGIAKKGKYGSFLQENW 127 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL-- 176 ++++SI+T++ + +PVT KIR P+ + + A++ G L +HGR R Sbjct: 128 NLIESIITKLHTELSIPVTAKIRI--FPDPQKTLDYAKMILKAGASILAVHGRLREQKGH 185 Query: 177 FNGEAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 F G A+++ I+ +++ + + ANG+I + YTG D ++ + P IF Sbjct: 186 FTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIF 245 Query: 235 REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP-N 293 L T E ++ + H+ ++ + Sbjct: 246 LPPSSPLMTLYPRIDDMCEEYLNIIREF-----KLESDYSSLSAIKGHLFKLMRPLLSIH 300 Query: 294 DQFRRTFNAIEDASEQ 309 R + Sbjct: 301 TDIRSKLAQGCTPRDF 316 >UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGI3_9GAMM Length = 313 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 16/313 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSR------LRMVHIDE 63 ++ APM G+ D R L +G L V+E + + R Sbjct: 2 KITLAPMEGVMDHHMRALLTSLGGIDLCVTEFIRVISLTLPAKVYRRVSPELFNQSKTPS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +Q+ G DP+ +A+ AR + G+ ID+N GCPAK VN+ G+ LL+ P+ + Sbjct: 62 GTPVRIQLLGQDPQCLANNARKALLVGSDGIDLNFGCPAKAVNKSKGGAILLKSPETLYK 121 Query: 124 ILTEVVNAVDV--PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ EV ++ +++KIR G+A + E AQ + G L +H RT+ + A Sbjct: 122 IVKEVRASMHTCETLSVKIRLGYADKSL-AIENAQAICEAGANELAVHARTKEEGYAPPA 180 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 + I +++ + IPV ANGDI A+ + +G +LMIGR A P + + I+ Sbjct: 181 HWHWIAKIRESIDIPVTANGDIFSAEDAKRCHEISGCHSLMIGRGALATPNLAQVIKGIE 240 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 + P ++ L+ ++ ++ +++ + F + Sbjct: 241 E------PYSWPQILTLMSQYLIVQTHGDKEKYLPSRIKQWLTFMRLQQPQALIFLQAVR 294 Query: 302 AIEDASEQLEALE 314 I+ E + A+E Sbjct: 295 KIKSTQEMIHAIE 307 >UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicrobia RepID=B9XLX7_9BACT Length = 340 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 87/310 (28%), Positives = 137/310 (44%), Gaps = 4/310 (1%) Query: 12 LIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG-IRTV 69 L APM +TD PF + G A + +E + +K L + + G Sbjct: 9 LALAPMQDVTDLPFMKVISSYGSADVYYTEYFRVHGS-SNLEKWILESITKNPTGQPVIA 67 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G+D + +A+ + +D+N+GCPA V RK AG LL+ P V SIL + Sbjct: 68 QMIGNDIPSLVRSAKELQQYPIVAVDLNLGCPAPIVYRKCAGGGLLREPKRVDSILGALR 127 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 +A+ V T+K R G+ +E+ + I LT+HGRT ++ E YD I Sbjct: 128 DAISVKFTVKTRIGFD-STGVFDELLPIFAKHSIDLLTVHGRTVQEMYRSEVHYDFIARA 186 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 Q VS PV+ANG++ KA VL +TGA LMIGR PW+F +I+H+ + P Sbjct: 187 AQAVSCPVLANGNVYSAKKAEEVLQFTGARGLMIGRGVIRNPWLFHQIRHHRRGEPIFIP 246 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 ++ + + + +K++++ P QF E Sbjct: 247 KGHDVLQYIRTLYDAVRPPDIRELAQVQKMKKYLNYVGLGVEPTGQFLHQIRRATSEVEF 306 Query: 310 LEALEAYFEN 319 + E Y + Sbjct: 307 FKICEDYLNH 316 >UniRef50_Q7QCT0 AGAP002791-PA (Fragment) n=3 Tax=Culicidae RepID=Q7QCT0_ANOGA Length = 396 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 22/309 (7%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG-IRTVQI 71 I APM + FR L G L + M+ ++ +S+K+RL +E Q Sbjct: 26 ICAPMVRYSKLEFRHLVRSYGTDLAFTSMIMADSFC-KSEKARLNEFTTNEEDTPLIAQF 84 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 A ++ + A+ + V +D+N GCP + + GSALL+ P+++ +L V Sbjct: 85 AANNTIDFLSASEM-VYPYVDGVDLNCGCPQRWAMAEGYGSALLKTPELIADMLGTVRRN 143 Query: 132 VD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 + V++K+R + +H+ ++ + E GI LT+HGRT + D+++ + Sbjct: 144 MPSTFSVSVKVRLLSSTDHKRTIDMCRQLEATGITFLTVHGRTAPEMTKVPVHKDALQEI 203 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 KQ + IP++ANGDI A + T D +M R P +F G P Sbjct: 204 KQSIGIPMVANGDIFTLDDAEQMYLQTKCDGVMTARGILSNPALFA--------GHSSTP 255 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAI-EDASE 308 + + +C + H ++ E + R N + ++ + Sbjct: 256 VECVKRWLNICQQADTDITY--------QCMHHHFSFMTESLLTKRLRYELNNLSKEKQK 307 Query: 309 QLEALEAYF 317 E ++ + Sbjct: 308 VYEFIQTHL 316 >UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2SJJ8_HAHCH Length = 349 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 75/321 (23%), Positives = 122/321 (38%), Gaps = 25/321 (7%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 R APM TDR +R L + +EM+++ + L E V Sbjct: 19 RFSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRNRFLDFN--AEEHPIAV 76 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ GS+P E+ + A+I + G I++N+GCP+ +V + G+ L+ YP+ V + + Sbjct: 77 QLGGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAECVAAMC 136 Query: 130 NAVDVPVTLKIRTGWAPEH--RNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI- 186 +AV +PVT+K R G + + + G IH R E I Sbjct: 137 SAVSIPVTVKHRIGIDDQDSEEFLLNFVRTVKAAGCSTFIIHARKAILKGLSPKENREIP 196 Query: 187 -------RAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +KQ + +I NG I ++ + L D +MIGR A RPW+ ++ Sbjct: 197 PLIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQE--VDGVMIGREAYQRPWMLADVD 254 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 H L P P + + + Y +H QFRR Sbjct: 255 HRLFHC----PPPSFSATDIGYQFLEYIERNYQNGVAVWHMARHALGLFHGQKGGKQFRR 310 Query: 299 -----TFNAIEDASEQLEALE 314 + +AL+ Sbjct: 311 YLSENAIKRTASPTVFRDALD 331 >UniRef50_Q6C4K2 YALI0E26059p n=1 Tax=Yarrowia lipolytica RepID=Q6C4K2_YARLI Length = 359 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 117/312 (37%), Gaps = 19/312 (6%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 Q + +A PM + PFR L + S MM + + Sbjct: 41 QGKTVTVAGPMVRYSKLPFRALVRHFDCDVVYSPMMLAREFCRNQTARLCDFTTNKDDFP 100 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQ+ G++ ++M A ++ + + IN GCP K+ R+ G+AL+ PD+V ++ Sbjct: 101 LIVQLGGNNAEDMVKAVKML-QPYVDGVGINCGCPIKEQIREGVGAALMTAPDLVAEMVA 159 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + + ++++ + + A+L E G ++++HGR YD I Sbjct: 160 AIRKECGAEIYVEVKMRIHKDLNDTVHFAKLVEAAGADSISVHGRLVPQRSRTAPNYDGI 219 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + VK V +PVIANGD +++ TG D +M R P +F Sbjct: 220 KIVKDSVDVPVIANGDAFTTTNIEEIVELTGCDGVMAARGILSNPAMFAG---------- 269 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P + YG I H S L E ++ N ++ Sbjct: 270 YTKTPWR-----AVELFWDYVTAYGLPYALTI--HHFSEML-EAELTRYEKKDLNNCKNM 321 Query: 307 SEQLEALEAYFE 318 E + + F+ Sbjct: 322 VELINWFDDRFD 333 >UniRef50_Q6MNE9 Nitrogen regulation protein nifR3 n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MNE9_BDEBA Length = 352 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 85/331 (25%), Positives = 133/331 (40%), Gaps = 19/331 (5%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVS----EMMSSNPQVWES-DKSRLRM 58 G+ L APM G+T R + + + EM++S E+ +K+ M Sbjct: 12 GKVNF--PLCLAPMVGLTHVALREVMRDYLPAEAYTIWPTEMLNSRRIPGENLEKTPETM 69 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 EPG+ QI G++ +A++ + VE GA+ IDINMGCP +K + G AL+ P Sbjct: 70 RAAYEPGL-VPQILGNEEDAIAESVKRLVEWGAEAIDINMGCPVQKALKHNYGVALMGDP 128 Query: 119 DVVKSILTEVVNAVDVPVTLKIR-TGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 ++ V VPV++K+R G E G + +H RT A Sbjct: 129 AYAAEVVRMTVKNSTVPVSVKLRAVGSTKEFDELLTFVSGLRQSGAAWVCLHPRTAAQKR 188 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 G A+++ I+ + + V PVI NGD+ A +L TG D M GR RPW+ ++ Sbjct: 189 RGNADWEQIKQLHKAVDFPVIGNGDVQTYDDAINMLKETGCDMAMAGRGLAARPWMMWQL 248 Query: 238 QHYLD-------TGELLPPLPLAEVKRL---LCAHVRELHDFYGPAKGYRIARKHVSWYL 287 L G+ P E L + ++G R R +V Sbjct: 249 GEELGFAPPAGKEGQKAPRTSEEEGAEYGKCLLRLIDRCRFYFGEDLAMRKVRFYVRTTS 308 Query: 288 QEHAPNDQFRRTFNAIEDASEQLEALEAYFE 318 + E +E + +FE Sbjct: 309 VWLPFGNTLVGVCAKARTIDEMIEGVTKFFE 339 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 141/319 (44%), Gaps = 18/319 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDE------ 63 R+I APM G+ D R + ++G VSE + N + + + Sbjct: 2 RIILAPMEGLLDFRLREILTQIGGYDECVSEFIRVNDTLLPPHRFFRTAPELKNSSRTKS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +QI GSDP MAD A + GA IDIN GCPA VNR G+ALL+ P+++ S Sbjct: 62 DTPVKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLKEPNLMYS 121 Query: 124 ILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ V N V ++PVT K+R G+ + A+ E+ G + + +H RT+ + A Sbjct: 122 IVKAVRNVVPENIPVTAKMRLGY-ESTELALDCAKALEEGGAKEIVVHARTKTDGYKPPA 180 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ I +K + I VIANG+I A +G D +MIGR A P I I+ L Sbjct: 181 YWEWIAKIKSILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRGAVTNPSIALLIKKKL 240 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 + + + K +L ++ + ++ + + +E+ + Sbjct: 241 E-----ERMSWQKTKEVLSSYWLSMEPDVEAVSRVGRIKQWLHYLSREYEEAQIDFQKIK 295 Query: 302 AIEDASEQLEALEAYFENF 320 I + + E + YF Sbjct: 296 RISNPKD-FELI--YFSEL 311 >UniRef50_O74553 tRNA-dihydrouridine synthase 4 n=1 Tax=Schizosaccharomyces pombe RepID=DUS4_SCHPO Length = 326 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 116/309 (37%), Gaps = 21/309 (6%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R IAAPM + PFR L + + + M+ + + D Sbjct: 19 RPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFL-HPKGRYFDFSTNDADASLI 77 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q DP + AA++ V I IN GCP ++ GSALL P+ V ++ V Sbjct: 78 LQFGVDDPVILEKAAQL-VGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAV 136 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 + + +++ A + + Q+ E G +T+HGRTR + D+IR Sbjct: 137 KSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRSSFPVNLDAIRE 196 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V+ V IPV+ANGD+ K + YT +M R P +F Sbjct: 197 VRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAG----------YE 246 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P V+R L +F+ H + + R T + + Sbjct: 247 ETPWGCVERFLWYSTSYSLNFHLFY--------HHLTTMMGQMTTKRERMTIPK-DSFAS 297 Query: 309 QLEALEAYF 317 ++ L+ +F Sbjct: 298 VMDWLDEHF 306 >UniRef50_C1DY86 Dihydrouridine synthase-like family protein n=1 Tax=Micromonas sp. RCC299 RepID=C1DY86_9CHLO Length = 495 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 144/281 (51%), Gaps = 4/281 (1%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 + N L+ AP+ + PFR LC + G +TVSEM+ + + + + R+ + Sbjct: 108 SIANELLLAPLTKGGNLPFRRLCVDFGCNVTVSEMVFARFLLRRNPVEKARLRRHPSEKL 167 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQ+A + E +AA + ++GA ID+N GCP + ++ G+ALL+ P ++ ++ Sbjct: 168 FGVQLATNQIVEGVNAAALAADAGADFIDLNCGCPIHETWKRGLGAALLKKPKKLERLVR 227 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + + +P+T+KIR G ++A+ E+ G A+ IHGRT+ + A +D I Sbjct: 228 GIADGTRLPLTVKIRLGAGGSEAPARQLAEAVENAGAAAVIIHGRTKEQRYTRAANWDLI 287 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 ++++ IPV+ NGDI + R L +GA A M GR A +PWIF+E+ ++ Sbjct: 288 GEIQRERGIPVVGNGDILTHYEHRDRLARSGAHAAMTGRGALIKPWIFKEVAEGVEW--A 345 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL 287 P EV LC++ +E F+ G + + W+ Sbjct: 346 PTPEERVEVYLRLCSYFKE--HFFTDEMGRGRYLEFMPWHF 384 >UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepID=D2VPF2_NAEGR Length = 450 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 75/317 (23%), Positives = 130/317 (41%), Gaps = 26/317 (8%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESD-KSRLRMVHIDEPGIR 67 + + APM ++ FR L E GA L + M + ++R + D G Sbjct: 102 SPKYVVAPMVDQSEMAFRLLSKEYGATLAYTPMFHGMYFAYHKKYRARFYQFNPDLEGPV 161 Query: 68 TVQIAGSDPKEMADAARINVES---GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 Q +DP+ + + ID+N+GCP + R GS L++ V SI Sbjct: 162 FAQFCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRIARRGRYGSFLMEDLQTVHSI 221 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE--AE 182 + + + +PVT KIR + + D G Q L +HGRTR + A+ Sbjct: 222 INKAHLELPMPVTAKIRI--FEDLELTMNYVKTVVDAGAQVLCVHGRTREQKGANQNYAD 279 Query: 183 YDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 + IRA++++ IP+IANG+I + L+YT DA+M G P +F Sbjct: 280 WTVIRAIREQFPQIPMIANGNIRTFQDVQDCLEYTRVDAVMSGEGLLENPALF------- 332 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 + G+ + PL +++ +C + ++H+ L ++ P + R Sbjct: 333 NGGQFVHPLDISDKYVNICKTHF--------PPDHNNIKRHLFRILDKYIP--EDRSDLR 382 Query: 302 AIEDASEQLEALEAYFE 318 I + E + + Sbjct: 383 GILGKASLWEHYREFVD 399 >UniRef50_Q9XVN8 Protein F36A2.2, partially confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9XVN8_CAEEL Length = 527 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 10/250 (4%) Query: 1 MRIGQYQLRNR---LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLR 57 +R + L N+ + APM ++ FR + GA LT + M+ ++ V + R Sbjct: 61 LRFWKETLENQRITKVLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNS 120 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 + + VQ + A R+ + +D+N+GCP R GS L Sbjct: 121 LALVKADRPLVVQFCANKVDTFLAACRLVEDV-CDGVDLNLGCPQMVAKRGRYGSWLQDE 179 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 D++ +++ V + +P++ KIR + + E A+ D G LT+HGRTR Sbjct: 180 VDLICEMVSAVRDYCRLPISCKIRVR--DDRQQTVEYAKRLVDAGATMLTVHGRTRDMKG 237 Query: 178 --NGEAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 G A++ IR V + V +PV+ANG+I P + TGA A+M P I Sbjct: 238 AETGLADWSRIRDVVEAVGSRVPVMANGNIQFPGDVERCMQATGAVAIMSAEGLLYNPLI 297 Query: 234 FREIQHYLDT 243 F + ++DT Sbjct: 298 FDDANAHVDT 307 >UniRef50_Q5CRK5 Ylr401cp-like protein with 2 CCCH domains plus Dus1p tRNA dihydrouridine synthase Tim barrel n=2 Tax=Cryptosporidium RepID=Q5CRK5_CRYPV Length = 707 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 138/326 (42%), Gaps = 51/326 (15%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 RN+LI AP+ + + PFR LC + GA +TVSEM+ N + + E Sbjct: 314 FRNKLILAPLTTVGNLPFRRLCLKFGADVTVSEMVLCNEILSGKASELALLKKSPEEKYF 373 Query: 68 TVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 +Q+AG + + IN IDIN CP K ++ K AGS L+ +++++ Sbjct: 374 GIQLAGGNKSTIIKTGEFINEHCEFDFIDINAACPLKSLHDKGAGSILVDRVSELETMVK 433 Query: 127 EVVNAVD---VPVTLKIRTGWAPEHRN---------------------CEEIAQLAEDCG 162 + +D V V +++ G +P ++N +I + D G Sbjct: 434 GLKKVMDGKLVTVKVRMSHGGSPINKNLSEKDYFENFENWPVIYHNMKTHKILNILCDSG 493 Query: 163 IQALTIHGRTRACLFNGEAEYDSIRAVK-------------------QKVSIP-VIANGD 202 I ALTIHGRT + EA++ I+ + P +I GD Sbjct: 494 IDALTIHGRTSFQRYTKEADWSYIKYCSVLNSKLYSNKVVNNIQNSNHSLICPSIIGCGD 553 Query: 203 ITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAH 262 I + + + D++MIGR A +PWIF EI+ + + +E ++ + Sbjct: 554 IINFQDYQQHIQNDLVDSVMIGRGALLKPWIFTEIKENRNWD-----ISASERFDIIKQY 608 Query: 263 VRELHDFYG-PAKGYRIARKHVSWYL 287 V + +G +G + R+ + +L Sbjct: 609 VNLGLEHWGTDKRGIALTRRFLLEFL 634 >UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L63_SACD2 Length = 318 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 130/317 (41%), Gaps = 16/317 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPG---- 65 R+ APM G+ D R + +G + V+E + V + + +DE Sbjct: 2 RIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETPA 61 Query: 66 -------IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 VQ+ GS+P +A A E GA ID+N GCPAK VNR G+ LL Sbjct: 62 LYRGAHCPVRVQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACLLDET 121 Query: 119 DVVKSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 D V I+ V A PVT KIR G+ + A+ E G L +H R++ Sbjct: 122 DTVFDIVNAVRKATPASTPVTAKIRLGYL-NRDSYLRNAKAIEAAGANELCVHARSKTDG 180 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + A + I ++ +SIPV+ANG+I + + + M+GR +P + E Sbjct: 181 YQPPAYWHYIGDIRDNLSIPVVANGEIWSLEDFKRCAEQSKCSDFMLGRGLLAKPDLALE 240 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 I+ Y+ GE PL EV + Y P ++ + + ++++ + Sbjct: 241 IKQYMA-GEAFNPLSWDEVCAHVRTLFERNCQSYPPKYLGNRVKQWLFYLQRQYSEAAEL 299 Query: 297 RRTFNAIEDASEQLEAL 313 D AL Sbjct: 300 FEAIKRERDEQALRRAL 316 >UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammaproteobacteria RepID=DUSC_ECOLI Length = 315 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 86/317 (27%), Positives = 149/317 (47%), Gaps = 20/317 (6%) Query: 11 RLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESD------KSRLRMVHIDE 63 R++ APM G+ D R L E+ L ++E + Q+ Sbjct: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQ+ G P+ +A+ A VE G+ +D+N GCP+K VN G+ LL+ P+++ Sbjct: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 Query: 124 ILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE- 180 + AV +PV++K+R GW + EIA + G L +HGRT+ + E Sbjct: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 ++ +I ++Q+++IPVIANG+I D A+ + +G DA+MIGR A P + R +++ Sbjct: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR--- 297 P +P EV LL + R ++ +S+ +E+ + Sbjct: 241 E------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 Query: 298 RTFNAIEDASEQLEALE 314 R N D + ++A++ Sbjct: 295 RVLNNSPDIARAIQAID 311 >UniRef50_C8QWB5 Dihydrouridine synthase DuS n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWB5_9DELT Length = 335 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 7/324 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 + G ++ L+ APMAG+T R L E G GL +EM+++ E+ +V Sbjct: 9 LEYGGLRISPPLLLAPMAGLTHSALRRLVQEQGGVGLLSTEMLAAKRLPHENPTLSPYLV 68 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + Q+ + P E+A A E GA ID+N+GCPA + R+ GS L++ P Sbjct: 69 RHPSEQPLSFQLLLTSPAEVAAAVASAEELGAAAIDLNLGCPAPDIRRQGGGSRLMEEPQ 128 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +V+ ++ E +P++ KIR G L ED G+ LT+H R R + Sbjct: 129 MVRRLVQETRRRTALPLSAKIRLGEELNAERLRAFCLLLEDAGVDLLTVHARLRGEPYGR 188 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + ++ + VK + IPV+ANG I A A L +GAD LMIGRAA PW+FR++ Sbjct: 189 KPRWEWVGKVKHWLRIPVVANGGIFSAADAAACLAASGADGLMIGRAAAATPWLFRQLAE 248 Query: 240 YLDT------GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN 293 T EL + + L + + P + ++ +Y + + Sbjct: 249 GWATDFAPGHDELSTAPSQEQKAAIYRRFCELLKESFTPERRLGRLKEFTHYYARNYQFG 308 Query: 294 DQFRRTFNAIEDASEQLEALEAYF 317 + D E + Sbjct: 309 HHLAAAVQSSPDLDTARRRAEHFL 332 >UniRef50_C5LCP2 tRNA-dihydrouridine synthase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LCP2_9ALVE Length = 606 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 18/288 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + AP+ + + PFR LC +G +TVSEM + + + + + I +Q+A Sbjct: 239 MLAPLTTVGNLPFRRLCVSLGCEVTVSEMALAESLLKGNRAEHALLKKHPDEKIFGIQVA 298 Query: 73 GSDPKEMADAARIN--VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 G P M+ A + +DINMGCP + +++K AGSAL+ + +++ + Sbjct: 299 GGFPDMMSRCAEMLCREMDDFDFLDINMGCPLEGLHKKGAGSALMTRLGKAEGVMSSMAK 358 Query: 131 ---AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 A D +T+KIRT ++ +++A A G+ + +HGRT ++ A++ Sbjct: 359 VCHAYDKNLTVKIRTAHYGQNHVYDKVAARAVSSGVDGVVLHGRTAQQRYSRPADWTFHT 418 Query: 188 AVKQKVS-------IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + + +P++ GDI D +A ++ G + LMIGR A +PWIF EI+ + Sbjct: 419 KCRTAMDSAVPGNAVPLVGCGDIIDWREAIERMETPGVEGLMIGRGALIKPWIFTEIKEH 478 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 D + AE LL V +G +G R+ + L Sbjct: 479 RDWD-----ISSAERLELLKRFVSYGLTHWGTDTRGVESTRRFLLEAL 521 >UniRef50_Q9NX74 tRNA-dihydrouridine synthase 2-like n=35 Tax=Metazoa RepID=DUS2L_HUMAN Length = 493 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 93/333 (27%), Positives = 141/333 (42%), Gaps = 43/333 (12%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSE------MM----------SSNPQVWESD 52 N+LI APM + P R L + GA + E M+ S+ V D Sbjct: 11 HNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDD 70 Query: 53 KSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGS 112 + R ++ + Q+ SD + AR+ VE+ ID+NMGCP + + G+ Sbjct: 71 RVVFRTCEREQNRV-VFQMGTSDAERALAVARL-VENDVAGIDVNMGCPKQYSTKGGMGA 128 Query: 113 ALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT 172 ALL PD ++ IL+ +V PVT KIR P + + + E GI A+ +HGR Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRI--LPSLEDTLSLVKRIERTGIAAIAVHGRK 186 Query: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGD----ITDPLKARAVLDYTGADALMIGRAAQ 228 R + I+A+ +SIPVIANG I T A ++M+ RAA Sbjct: 187 REERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAM 246 Query: 229 GRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 P IF ++ L PL EV + + + + Y K + L+ Sbjct: 247 WNPSIF--LKEGLR--------PLEEVMQKYIRYAVQYDNHYTNTKYC------LCQMLR 290 Query: 289 EHAPNDQFRRTFNAIEDASEQLEA--LEAYFEN 319 E + Q R +A + + E EA L A++E Sbjct: 291 EQLESPQGR-LLHAAQSSREICEAFGLGAFYEE 322 >UniRef50_D2VPP8 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VPP8_NAEGR Length = 427 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 112/273 (41%), Gaps = 17/273 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + APM + FR LC E G + + M+ S+ VQ A Sbjct: 127 VQAPMVRYSKLAFRLLCREYGCDVVYTPMIMSDCFHKSQKARDSDFTTHYYDSPLVVQFA 186 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV---- 128 ++P + + A ++ ID+N GCP V ++ G+AL+ P + ++ E Sbjct: 187 ANNPTDFSLACQLA-APYCDGIDLNCGCPQPYVMKESLGAALVTKPQKIFDMVHEANNKF 245 Query: 129 VNAVDVPVTLKIRTGWAPEH---RNCEEIAQLAEDCGIQALTIHGRTRACL-FNGEAEYD 184 ++ + P+ +KIR + R E+A+ E G +T+HGRT N + D Sbjct: 246 ISGMSRPIGVKIRLHPEDDTLEFRKTIELARQIEMAGASWVTVHGRTHKQRTKNTKVNPD 305 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE-------- 236 + +KQ +++PV+ NGDI + TG D +M R P +F Sbjct: 306 GPKTIKQILNVPVMHNGDIFTLGDSDRFAKETGCDGVMSARGLLSNPALFSGYDYVPFEC 365 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDF 269 IQ YL + +P ++ + + H F Sbjct: 366 IQRYLQIAIQIGGVPFHILQHHIMFMLYSHHQF 398 >UniRef50_C1TL75 tRNA-dihydrouridine synthase n=2 Tax=Synergistaceae RepID=C1TL75_9BACT Length = 345 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 136/325 (41%), Gaps = 9/325 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 +G +L N ++ APMAG+T R + + +GAGL +EM+S ++ K+ + Sbjct: 16 VGGLELSNPIMMAPMAGVTLPAVRRMFWRLGAGLAHTEMVSCAGLTRKNRKTTEMLFRAP 75 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 G +Q+ D + A I + G + INM CP KV +K AG+ LL D+ Sbjct: 76 GEGPLVLQLFAGDSDTLMRGAEIALSLGVPFDALGINMACPMPKVLKKGAGARLLSRLDL 135 Query: 121 VKSILTEVVNAVDVPVTLKIR-TGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ + N + +PV KIR + E A + G + +HGRT + + G Sbjct: 136 AVDMVRRL-NRLGLPVWPKIRKIVPDGSGPDTLEFASALVEAGAANVGVHGRTASQRYEG 194 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +++D +R V + + + A+GDI+ P L G ++ + R P++ I Sbjct: 195 TSDFDEVRRVARALPGVISASGDISGPEDVSKALAG-GCVSVFLARGGVTDPFVLPRILS 253 Query: 240 YLDTGE----LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQ 295 +L P + L +L F+G + ++ +S + Sbjct: 254 HLGYNIGDSVYDDPPSIETRAALFSDLAEDLSTFHGERVAMVLLKRLMSGVFRGVPGCSS 313 Query: 296 FRRTFNAIEDASEQLEALEAYFENF 320 +RR + D + + + F Sbjct: 314 YRRAIASASDWGTMCAHIRDWRQFF 338 >UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii RepID=A9KG09_COXBN Length = 353 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 130/326 (39%), Gaps = 20/326 (6%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 L R+ APM G TDR FR ++ L +EM+++ + K + + E Sbjct: 25 LMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKG--KQWRCLDYSPEE 82 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +Q+ GSDP+ +A AR+ E G I++N+GCP+ +V G+ LL+ ++V Sbjct: 83 HPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADC 142 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEH--RNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 + + V++PV++K RTG + + + + G + IH R AE Sbjct: 143 VAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAE 202 Query: 183 --------YDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP-- 231 Y + +KQ + +I NG I L D +MIGR A P Sbjct: 203 NRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE--VDGVMIGREAYANPLF 260 Query: 232 -WIFREI-QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE 289 F ++ + G KR+L ++ + +H++ Q Sbjct: 261 CAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGLFQG 320 Query: 290 HAPNDQFRRTFNAIEDASEQLEALEA 315 ++RR + + A+E Sbjct: 321 QPGAKKWRRFLHENTRREGPIAAIEE 346 >UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales RepID=B1XI00_SYNP2 Length = 344 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 132/311 (42%), Gaps = 20/311 (6%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVH 60 RI + L APM TDR FR L + L +EM+++ + L Sbjct: 4 RINTVVCPHLLSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRPKLLDFDA 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + P ++Q+ G +PKE+A+ A++ + G I++N+GCP+ +V + G+ L+ P++ Sbjct: 64 AEHP--ISLQLGGDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPEL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWA--PEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 V + + AV++PVT+K R G + + ++ G ++H R Sbjct: 122 VADCVAAMQGAVNIPVTVKHRIGVDEQDSYADLCRFIEIVSATGCDRFSVHARKAWLQGL 181 Query: 179 GEAEYDSIRAVKQK---------VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 E ++ ++ + + NG IT + L T DA+M+GRAA Sbjct: 182 SPKENRTVPPLRYADVYRLKQDFPHLWIEINGGITTLEHIQTHL--TQVDAVMVGRAAYD 239 Query: 230 RPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE 289 P++F + + GE + P E+ + ++ K + I+R H+ Sbjct: 240 NPYLFATVDRDI-YGEAIQPKSRHEIVEEMLPYIER--ATKAGVKLHSISR-HMLSLFLG 295 Query: 290 HAPNDQFRRTF 300 ++R Sbjct: 296 QPGTKAWKRFI 306 >UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C4H3_THAPS Length = 333 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 124/315 (39%), Gaps = 14/315 (4%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID----EPGIRTVQ 70 APM +D P+R L L + M+ + + + K R + I+ + Q Sbjct: 1 APMVDASDLPYRLLTRRYNTSLCFTPMIHAKMFI-DKPKYREKFWKIEGMPSQDRPLIAQ 59 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQ--YPDVVKSILTEV 128 G D + A ++ E +DIN GCP R G+ L++ D + I+ + Sbjct: 60 FCGHDKNVLLQAMKVL-EPHVDGVDINCGCPQNIAKRGRYGAFLMEEDNGDKIVEIVQHL 118 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYDSI 186 ++VPV++K+R + + + D G LTIHGRTR G A +D I Sbjct: 119 TANLNVPVSVKLRI-LPTGIEDSLALYKRLVDAGAAMLTIHGRTRFQNKVDTGTANWDYI 177 Query: 187 RAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 R V V +PVIANG+I + + R + TG D +M P +F E Sbjct: 178 RQVVDLVGDRVPVIANGNICNLDEVRKCFEVTGVDGVMSSEGILEYPPLFTETNVESTGF 237 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ-EHAPNDQFRRTFNAI 303 + P L + L + G G + R H+ +L + + + R Sbjct: 238 KRTGPGRLQMAEDYLELCKEYPSEEGGQGSGLKCIRAHLHRFLHADLQVHTKIRDAVVKT 297 Query: 304 EDASEQLEALEAYFE 318 +EA+ E Sbjct: 298 FTLEAAVEAVSMIRE 312 >UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZQ6_CHRSD Length = 340 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 141/316 (44%), Gaps = 12/316 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMS-------SNPQVWESDKSRLRMVH 60 R+ APM G+ D R L GA TV+E + + + + Sbjct: 6 SGRIGLAPMEGVIDVVTRELLSADGALDWTVTEFVRVVDTRLPARVFLRHCPELETAACA 65 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +Q+ GSDP+ +A A GA+ +D+N GCPAK VNR G++LL+ P+ Sbjct: 66 TASGTPVHLQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGGASLLRQPER 125 Query: 121 VKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF 177 V +++ V A+ + VT KIR G+ +H A+ AE G L +H RTR + Sbjct: 126 VHTVVRAVAEALAPLGIAVTAKIRLGFDDKH-VALACAEAAESGGAAHLVVHARTRREGY 184 Query: 178 NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 A ++ I ++ ++SIPVIANGDI +G +M+GR PW+ R I Sbjct: 185 RPPAHWEWIGRIQARLSIPVIANGDIWTLEDYWKARTLSGCADVMLGRGMLADPWLARRI 244 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 +H+ GE+LP P + +L A+ + + + ++ ++ H + Sbjct: 245 KHWQRHGEMLPATPWSARAEILHAYAQRMRAHLPEKVVVSLLKQWLNQMRGRHEEAARRF 304 Query: 298 RTFNAIEDASEQLEAL 313 + ++ L L Sbjct: 305 AALRRRTELADFLAGL 320 >UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammaproteobacteria RepID=DUSC_VIBPA Length = 322 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 155/323 (47%), Gaps = 23/323 (7%) Query: 11 RLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVH-------ID 62 R++ PM G+ D R + E+ L V+E + QV D R+ Sbjct: 2 RVVLGPMEGVLDHLMRQILTEINDYDLCVTEFVRVIDQVLP-DHVFHRLCPELMQGSQTT 60 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 VQ+ G +P MA+ A E GA+ ID+N GCPAK VN+ G+ALLQ+P+++ Sbjct: 61 SGVPVHVQLLGQEPHWMAENAIRAAELGARGIDLNFGCPAKMVNKSKGGAALLQHPELIH 120 Query: 123 SILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN-G 179 S++ +AV ++PV+ KIR GW +C EI + G LT+H RT+ + Sbjct: 121 SVVKACRDAVPANIPVSAKIRLGW-ENPEDCFEIVDAIQSAGANELTVHARTKQGGYKAS 179 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 E +++ I ++++ SIP+IANG+I + + ++ TG D+LM+ R A P + ++H Sbjct: 180 EIKWEYINKIRERFSIPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNIPNLGNMVKH 239 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR-KHVSWYLQ-EHAPNDQFR 297 P+ ++V LL + + + G Y R K YL+ + ++ Sbjct: 240 NH------TPMVWSDVVDLLIYYSK--FEMKGDKGLYYPNRVKQWFAYLRQSYPEANELF 291 Query: 298 RTFNAIEDASEQLEALEAYFENF 320 R A+ +E ++ Y + Sbjct: 292 REIRTFNKAAPIVEHIQRYRDEL 314 >UniRef50_D2MLS1 TIM-barrel protein, nifR3 family n=1 Tax=Bulleidia extructa W1219 RepID=D2MLS1_9FIRM Length = 234 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 103 KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCG 162 KK+ + AGS LLQ P + + VV+ PVT+KIRTGW +H+N E+A++ E+ G Sbjct: 13 KKIIKSHAGSYLLQDPRQAQKVAKAVVDHSKKPVTVKIRTGWDHQHKNAVEVAKVLEEAG 72 Query: 163 IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 + A+TIHGRT++ +++G + + I+ VKQ VSIPVI NGDI + +L+ TG DA+M Sbjct: 73 VSAITIHGRTKSQMYSGTVDLEMIKQVKQAVSIPVIGNGDIKTVEDGKRMLEETGVDAIM 132 Query: 223 IGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKH 282 IGR GRP+ E+ +L+ E + P + LL + L G G ++ R Sbjct: 133 IGRGLLGRPYFMSEMVAFLNGEEFIEP-SFLKRIHLLEEYAIHLSARMGEKNGIQMMRGM 191 Query: 283 VSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA 321 SWY+ Q ++ ++I + + L+ Y ++ A Sbjct: 192 ASWYVTGMPNCSQIKKALSSIHTLKDLQQILKDYKKSLA 230 >UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KP54_CRYNE Length = 610 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 122/369 (33%), Gaps = 63/369 (17%) Query: 2 RIGQYQL-----RNRLIAAPMAGITDRPFRTLCYE------------------------- 31 ++G Y + + APM ++ +R L Sbjct: 39 KLGGYDFYRSIGSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVTTPQGKAYIRHP 98 Query: 32 MGAGLTVSEMMSSNPQVWESDK------------------SRLRMVHIDEPGIRTVQIAG 73 GA + + M+ + V + VQ Sbjct: 99 GGAHVCYTPMIHAKVFVDAKGEGGRNGDGQFCLSLDEEGGEGTIGGVEGGDRPLIVQFCA 158 Query: 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD 133 +DP + AA+ VE +DIN GCP R GS L +++ +++ + + Sbjct: 159 NDPDILLAAAKK-VEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLS 217 Query: 134 VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC--LFNGEAEYDSIRAVKQ 191 VPVT K R P+ A++ E G Q LT HGRTR G A+++ IR VK+ Sbjct: 218 VPVTAKFRI--FPDLDKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLADWEYIREVKK 275 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 V +PV ANG+I ++ TG D +M P IF Sbjct: 276 AVKVPVFANGNILYREDVDRCMEVTGCDGVMTAEGNLSNPAIF----------MPPEHPH 325 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 +L ++ + + H+ L+ D+ R A S+ ++ Sbjct: 326 AHPPITVLAHRYLDIVEALDTPTAGSAIKAHLFRLLKPVLDTDEELRVQIATCRWSDGMD 385 Query: 312 ALEAYFENF 320 + Sbjct: 386 GFREIIRDI 394 >UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1E8_MARMS Length = 335 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 144/324 (44%), Gaps = 26/324 (8%) Query: 6 YQLRNR------LIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSS----------NPQV 48 L+N L APM G+ D R L + G VSE + V Sbjct: 9 LTLKNPTNNSIVLAVAPMEGVMDHTMRALLSQTGGMDYLVSEFIRVTQYPIPAATFKHLV 68 Query: 49 WESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRK 108 E+ Q+ GS+ + MA++A ++GA+ ID+N GCPAK+VN Sbjct: 69 PENTNK----ARTTHNHPVHTQLLGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGH 124 Query: 109 LAGSALLQYPDVVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQAL 166 GS LLQ PD + I++ + + + D+PV+ KIR G+ E + +A E G+ L Sbjct: 125 GGGSVLLQTPDALYDIMSAIRDTLPSDIPVSAKIRLGFEDEALLFDNVA-AIEAAGVGTL 183 Query: 167 TIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRA 226 TIHGRT+ + A ++ I ++ K + V+ANGDITD TG MIGR Sbjct: 184 TIHGRTKKDGYKPPARWEKIGEIQAKTKMTVVANGDITDTKSLLRCQSITGCQHFMIGRG 243 Query: 227 AQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWY 286 + P++F++I+ L+ E + RL ++ REL + Y ++ Sbjct: 244 SLNNPFVFQQIRKELNGQESTADTT--NLNRLFISYSRELQEHYDEVAALGRLKQWCGHL 301 Query: 287 LQEHAPNDQFRRTFNAIEDASEQL 310 E + +T + +E + Sbjct: 302 RFEFKEIKENLQTLRRCKSVNELI 325 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 404 e-111 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 384 e-105 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 383 e-105 UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 375 e-103 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 375 e-102 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 374 e-102 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 374 e-102 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 371 e-101 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 371 e-101 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 370 e-101 UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteoba... 370 e-101 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 368 e-100 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 368 e-100 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 366 e-100 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 366 e-100 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 366 e-100 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 364 3e-99 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 362 1e-98 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 362 1e-98 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 361 1e-98 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 360 5e-98 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 359 6e-98 UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonella... 359 6e-98 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 355 1e-96 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 352 8e-96 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 352 1e-95 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 350 4e-95 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 346 5e-94 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 345 1e-93 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 345 1e-93 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 345 1e-93 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 344 3e-93 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 343 6e-93 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 342 1e-92 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 342 1e-92 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 340 3e-92 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 340 5e-92 UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes Re... 339 9e-92 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 338 1e-91 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 338 2e-91 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 337 2e-91 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 337 2e-91 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 337 4e-91 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 336 8e-91 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 332 1e-89 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 332 1e-89 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 332 1e-89 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 332 1e-89 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 331 2e-89 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 330 3e-89 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 330 4e-89 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 329 6e-89 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 329 6e-89 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 329 6e-89 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 329 1e-88 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 328 1e-88 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 325 1e-87 UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepI... 325 2e-87 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 324 3e-87 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 323 4e-87 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 323 5e-87 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 322 8e-87 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 322 1e-86 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 322 1e-86 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 321 2e-86 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 321 2e-86 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 320 3e-86 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 319 1e-85 UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinob... 319 1e-85 UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostri... 318 1e-85 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 317 4e-85 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 317 4e-85 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 316 5e-85 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 316 6e-85 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 316 6e-85 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 316 6e-85 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 315 9e-85 UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacte... 315 1e-84 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 315 1e-84 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 315 1e-84 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 315 2e-84 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 315 2e-84 UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bactero... 313 4e-84 UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibac... 313 7e-84 UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia ... 312 1e-83 UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylob... 312 1e-83 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 309 1e-82 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 309 1e-82 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 308 1e-82 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 308 1e-82 UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis... 307 3e-82 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 307 4e-82 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 307 4e-82 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 305 9e-82 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 305 1e-81 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 304 3e-81 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 304 4e-81 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 303 7e-81 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 303 7e-81 UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collins... 301 2e-80 UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xeno... 301 2e-80 UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like... 301 2e-80 UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Plancto... 301 2e-80 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 300 3e-80 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 300 4e-80 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 300 4e-80 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 300 4e-80 UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacter... 300 5e-80 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 300 6e-80 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 299 6e-80 UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protei... 299 8e-80 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 299 9e-80 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 298 2e-79 UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa... 297 3e-79 UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propioni... 296 5e-79 UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=... 295 2e-78 UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=... 294 3e-78 UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dict... 293 8e-78 UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 292 9e-78 UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacte... 292 9e-78 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 292 1e-77 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 292 1e-77 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 291 2e-77 UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobi... 291 2e-77 UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=A... 290 3e-77 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 290 4e-77 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 290 4e-77 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 290 6e-77 UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=R... 289 7e-77 UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coe... 289 1e-76 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 288 1e-76 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 288 2e-76 UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinom... 288 2e-76 UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 287 3e-76 UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovib... 287 3e-76 UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 287 3e-76 UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Euka... 287 3e-76 UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine... 286 6e-76 UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Cho... 286 6e-76 UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 285 1e-75 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 285 1e-75 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 285 1e-75 UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinom... 285 2e-75 UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tet... 284 2e-75 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 284 2e-75 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 284 3e-75 UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga ol... 283 6e-75 UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricale... 280 5e-74 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 280 5e-74 UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamie... 279 9e-74 UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 278 2e-73 UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=D... 277 3e-73 UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=At... 277 3e-73 UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=S... 277 5e-73 UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=E... 276 6e-73 UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteo... 276 9e-73 UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera Rep... 276 9e-73 UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota R... 275 1e-72 UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobi... 275 1e-72 UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogace... 275 2e-72 UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME 274 4e-72 UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota ... 273 6e-72 UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_D... 273 7e-72 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 273 7e-72 UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=A... 272 1e-71 UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=... 272 1e-71 UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conex... 271 2e-71 UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 ... 270 4e-71 UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agarica... 270 6e-71 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 269 7e-71 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 269 7e-71 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 269 9e-71 UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Tr... 268 2e-70 UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candida... 268 2e-70 UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota... 268 2e-70 UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus... 268 2e-70 UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasid... 268 3e-70 UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylo... 268 3e-70 UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 ... 267 3e-70 UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax... 267 4e-70 UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=P... 267 4e-70 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 265 1e-69 UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Mag... 265 2e-69 UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteo... 264 2e-69 UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Eut... 264 3e-69 UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella t... 263 5e-69 UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Met... 263 5e-69 UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 263 5e-69 UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91... 263 5e-69 UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 263 6e-69 UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genom... 263 7e-69 UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synt... 263 7e-69 UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga l... 262 9e-69 UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezi... 262 1e-68 UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicob... 261 2e-68 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 261 2e-68 UniRef50_B0SXE6 TIM-barrel protein, nifR3 family n=2 Tax=Cauloba... 261 2e-68 UniRef50_B9CKJ9 tRNA-dihydrouridine synthase B n=1 Tax=Atopobium... 260 4e-68 UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermot... 260 5e-68 UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycet... 260 5e-68 UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii Rep... 260 5e-68 UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=D... 259 1e-67 UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 258 1e-67 UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 258 2e-67 UniRef50_C2KNM7 Possible tRNA-dihydrouridine synthase n=4 Tax=Mo... 258 2e-67 UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomyco... 258 2e-67 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 257 3e-67 UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultu... 257 4e-67 UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseria... 257 4e-67 UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella R... 257 5e-67 UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypano... 257 5e-67 UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammapro... 256 7e-67 UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilag... 256 7e-67 UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=L... 255 1e-66 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 255 1e-66 UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteri... 255 2e-66 UniRef50_Q6C4K2 YALI0E26059p n=1 Tax=Yarrowia lipolytica RepID=Q... 254 2e-66 UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicro... 254 3e-66 UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii Re... 254 4e-66 UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas s... 253 5e-66 UniRef50_Q22A31 TIM-barrel protein, yjbN family n=2 Tax=cellular... 253 7e-66 UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine... 253 8e-66 UniRef50_B6JXB4 tRNA-dihydrouridine synthase n=1 Tax=Schizosacch... 252 9e-66 UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosac... 252 1e-65 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 252 2e-65 UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales ... 251 2e-65 UniRef50_A1AW94 TIM-barrel protein, yjbN family n=2 Tax=Gammapro... 251 2e-65 UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammapro... 251 2e-65 UniRef50_UPI00015B403F PREDICTED: similar to MGC79829 protein n=... 251 3e-65 UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria... 251 3e-65 UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammapr... 251 3e-65 UniRef50_Q7QCT0 AGAP002791-PA (Fragment) n=3 Tax=Culicidae RepID... 250 3e-65 UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammapro... 250 4e-65 UniRef50_UPI000186DA49 tRNA-dihydrouridine synthase, putative n=... 250 4e-65 UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 250 5e-65 UniRef50_D1N0Y1 Dihydrouridine synthase DuS n=1 Tax=Victivallis ... 250 5e-65 UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesi... 250 7e-65 UniRef50_B0ESC7 tRNA-dihydrouridine synthase, putative n=2 Tax=E... 249 8e-65 UniRef50_Q06063 tRNA-dihydrouridine synthase 4 n=23 Tax=Saccharo... 249 9e-65 UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi R... 249 1e-64 UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharopha... 248 1e-64 UniRef50_D0MWM4 tRNA-dihydrouridine synthase 3 n=1 Tax=Phytophth... 248 1e-64 UniRef50_A8J121 Predicted protein n=1 Tax=Chlamydomonas reinhard... 248 2e-64 UniRef50_C7NBC4 Dihydrouridine synthase DuS n=3 Tax=Leptotrichia... 248 2e-64 UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisell... 248 3e-64 UniRef50_Q9VJ06 CG10495 n=12 Tax=Drosophila RepID=Q9VJ06_DROME 246 6e-64 UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaprot... 246 7e-64 UniRef50_Q2RTX4 Dihydrouridine synthase TIM-barrel protein yjbN ... 245 1e-63 UniRef50_C5LCP2 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 245 2e-63 UniRef50_B9PN28 tRNA-dihydrouridine synthase, putative n=3 Tax=T... 245 2e-63 Sequences not found previously or not previously below threshold: >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 137/319 (42%), Positives = 194/319 (60%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG +L+N++ +PMAG+TD PFR +C E G GL +EM++ ++ + ++ + Sbjct: 1 MKIGNLELKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKI 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +E VQI GS+P+ M AA I + +I+DINMGCPA KV + GSAL++ P + Sbjct: 61 EEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + +L VV PVTLKIR GW N EIA++AEDCGI AL IHGRTR + G+ Sbjct: 121 AEEVLRAVVKNSKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYTGK 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I +K+ +SIPVI NGD+ + +LD TG DA+MIGR AQG PWIF+ I HY Sbjct: 181 ADWDIIAEIKKNLSIPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQGNPWIFKRINHY 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 ++TGE+LP L E H++ + +G R RKH++WYL+ + + R Sbjct: 241 MNTGEILPEPTLNEKISTAIKHLKLAVEEHGEYVAVREMRKHIAWYLKGLRNSAKLRDEI 300 Query: 301 NAIEDASEQLEALEAYFEN 319 N IED E + LE Y E+ Sbjct: 301 NKIEDYQEVVSKLEYYMED 319 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 123/303 (40%), Positives = 176/303 (58%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG L N LI PMAG+TD PFR LC E GAGL EM+S+ ++++ + + Sbjct: 9 LQIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYKNKNTESLLSI 68 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + ++Q+ GSDP+ MA A+ E I+DINMGCP K+ GSAL++ P + Sbjct: 69 DEREKPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPLL 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I+ +V A+D PVT+KIR G+ EH N E+A +AE+ G A+ +HGRTR ++G+ Sbjct: 129 AGQIIESIVKAIDKPVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYYSGK 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D IR VK+ VSIPVI NGD+ + + TG D MI R AQG PWIF +I HY Sbjct: 189 ADWDIIRQVKEAVSIPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQGNPWIFSQILHY 248 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +TGE EV+R++ H R + +F G G RKH +WY + + + R Sbjct: 249 FETGEHQEKPSFEEVRRMILRHARMMIEFKGEYTGIHEMRKHTAWYTAGYPHSSRLRAAV 308 Query: 301 NAI 303 N + Sbjct: 309 NTV 311 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 133/317 (41%), Positives = 193/317 (60%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG ++NR+I+APMAGITDR +R L E G GL +EM+S ++ + K+ + + Sbjct: 2 LRIGNVTIKNRVISAPMAGITDRAYRILAKEAGCGLVCTEMISDQALLYGNPKTNILLDC 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E ++QI GS P+ MA AA I GA IIDINMGCP K+ + G+AL++ P++ Sbjct: 62 TGETPPISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKPEL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I+++VV +V VPVT+KIR GW N E+A LAE+ G +A+T+HGRTR+ ++G+ Sbjct: 122 AQKIISDVVQSVRVPVTVKIRKGWDESFPNAVEMALLAEEAGAKAVTVHGRTRSQFYSGK 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I++VK+ V+IPVI NGDI +P A +L +TG DA+MIGRA+ G PWIF H+ Sbjct: 182 ADWDIIKSVKKAVTIPVIGNGDIREPRDAVRMLMHTGCDAVMIGRASLGNPWIFSSTVHF 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 LD GE LP + + H+ L + G R RKH +WY + ++ R Sbjct: 242 LDCGENLPAPSPRQRLSVALRHLELLIELKGEYIAIREMRKHAAWYTRGLREANRIREKI 301 Query: 301 NAIEDASEQLEALEAYF 317 N SE E L + Sbjct: 302 NRAVSLSEIRELLNYFI 318 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 375 bits (964), Expect = e-103, Method: Composition-based stats. Identities = 265/320 (82%), Positives = 295/320 (92%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IGQYQ++N L+AAPMAGITDRPFR+LCY MGAG+TVSEM+SSNPQVW++DKSRLRM+H Sbjct: 30 MYIGQYQIKNCLVAAPMAGITDRPFRSLCYSMGAGMTVSEMLSSNPQVWKTDKSRLRMIH 89 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 DE GIR+VQIAGSDP EMA AARINV +GAQIIDINMGCPAKKVNRKLAGSALL+YP++ Sbjct: 90 SDELGIRSVQIAGSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPEL 149 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ IL VVNAVDVPVTLK+RTGW+PE RNC +IAQLAE CGIQA+TIHGRTRACLFNG Sbjct: 150 IEKILLAVVNAVDVPVTLKVRTGWSPEERNCIKIAQLAERCGIQAVTIHGRTRACLFNGA 209 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYDSIRA KQ V+IP+IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY Sbjct: 210 AEYDSIRAAKQNVTIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 269 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGELLPP+P+AEV+ L+ AHV+ELHDFYG KG RIARKHVSWYL+EHAP+DQFRRTF Sbjct: 270 LETGELLPPMPIAEVQCLMQAHVKELHDFYGQGKGIRIARKHVSWYLREHAPDDQFRRTF 329 Query: 301 NAIEDASEQLEALEAYFENF 320 N IEDASEQLE LEAYFE F Sbjct: 330 NTIEDASEQLEVLEAYFEKF 349 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 120/316 (37%), Positives = 173/316 (54%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IGQ ++ +I APM +TD FR LC GA + +E +SS+ + + KS+ ++ Sbjct: 45 MKIGQIEIEKPVILAPMEDVTDPSFRRLCKHYGADIVFTEFISSDGLIRHAVKSKRKLDV 104 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 D+ +QI G+ + M +AA++ +G IDIN GCPAKKV K AGS LL PD+ Sbjct: 105 FDDERPVAIQIFGNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDL 164 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ I VV AV +PVT K R GW + + + E CGIQAL+IHGRTRA ++ G Sbjct: 165 MEKITDAVVKAVRLPVTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGR 224 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I K+ +IP+I NGDI A+ + D TG D +MIGR A G P++FRE +H Sbjct: 225 ADWSWIARAKEVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPFLFREAKHL 284 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 + TGE LP E + H+ + G G R+H S YL+ + R Sbjct: 285 IQTGEHLPQATHRERVAVAIRHLEMSLERKGEKYGVLEMRRHYSTYLKGLPNVSKVRDYL 344 Query: 301 NAIEDASEQLEALEAY 316 D + +EAL + Sbjct: 345 VRENDPNLIVEALRRF 360 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 178/320 (55%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 IG + L+ PMAG+TD PFR LC E GA L +EM+S+ + + + + + Sbjct: 3 FTIGNVNINGNLVLGPMAGVTDLPFRLLCKEQGADLIYTEMVSAKGIYYNNKNTEVLLEV 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ +Q+ G DP M++ A+ +DINMGCP KV GSAL+ P+ Sbjct: 63 EEKERPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPER 122 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I++ + A+ PVT+KIR G+ ++ N E+A++ E G A+ +HGRTR ++GE Sbjct: 123 IGEIVSAISKAIKKPVTVKIRKGFTKDNINAVEVAKVIEQSGGAAIAVHGRTREQYYSGE 182 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I+AVK+ VSIPVI NGD+ P + ++ YTG DA+MI R +G PW F + +HY Sbjct: 183 ADWDIIKAVKEAVSIPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRGNPWFFSQAKHY 242 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGE+L + EV ++ H R + G RKHV+WY + + + R Sbjct: 243 LNTGEILAKPSVPEVIEMILRHGRLAIEVKGEFTAMHEMRKHVAWYTMGYPKSAKLRNQV 302 Query: 301 NAIEDASEQLEALEAYFENF 320 N IE + + ++ Y E Sbjct: 303 NEIETYEDLIVLMKKYEEML 322 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 124/312 (39%), Positives = 181/312 (58%), Gaps = 1/312 (0%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 ++ APMAG+TD PFR +C E GA TVSEM+S+ ++++ K+ + + Sbjct: 8 PFPVVLAPMAGVTDLPFRVICRENGADYTVSEMVSAKALLYKNQKTFAMLTIDPKEHPTA 67 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q+ GS P E+A A +I GA +ID+NMGCP K+ GSAL++ PD V +IL + Sbjct: 68 IQLFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAILAAL 127 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 V+AV +PVT+K R GW H+N IAQ+AE G+ A+ +HGRTRA + G+A++D IRA Sbjct: 128 VDAVSIPVTVKFRAGWDEAHKNAAVIAQMAEKAGVSAVCVHGRTRAQFYQGKADWDIIRA 187 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 VK+ V IPV+ NGDI A + + TG D +MI R A+G PWIFR+++ L G+ + Sbjct: 188 VKESVGIPVLGNGDIFHAEDALRMKEETGCDGVMIARGAEGNPWIFRDVKALLH-GKAIS 246 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P+ + E ++ H+ +L F G G R R H + YL + +R T N + Sbjct: 247 PVSVQERFAMIRRHLHDLILFKGERVGVREMRHHGAMYLTGLPHSAYYRNTINQAQTEEA 306 Query: 309 QLEALEAYFENF 320 L L Y E Sbjct: 307 LLAVLGEYEEKL 318 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 208/318 (65%), Positives = 252/318 (79%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG YQLRNR++ APMAGITD+PFR LC GAGLT SEMMS+NPQVW ++KS+LR+ H Sbjct: 1 MRIGSYQLRNRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAH 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ G+ VQIAGSDP EMA AA INVE GAQIIDINMGCPAKKVNRKLAGSALLQ+PD+ Sbjct: 61 SEDLGLNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ IL EVV+AV+VPVTLKIRTGW +RNC +I ++AE CGIQALT+HGRTRACLF GE Sbjct: 121 VEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEGE 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I+AVKQ ++IPVIANGDI KA+ VL+YTGADA+MIGRAA G PW+F+ +++ Sbjct: 181 AEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLFQAVENL 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 ++ + L E + H++ELH FYG KGYRIARKHV+WYLQ P+ F++TF Sbjct: 241 IEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIARKHVAWYLQGIQPDSVFKQTF 300 Query: 301 NAIEDASEQLEALEAYFE 318 NAI D EQL LE +F Sbjct: 301 NAISDPKEQLIVLEDFFN 318 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 173/299 (57%), Gaps = 1/299 (0%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 + APMAG+TD PFR +C E+GA TVSEM+S+ ++++ K+ + +Q Sbjct: 18 PIALAPMAGVTDLPFRVICRELGADYTVSEMVSAKALLFKNPKTFAMLEVDPREHPVAIQ 77 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + GS P+E+ A+I E GA IID NMGCP K+ GSAL++ P+ + L +V+ Sbjct: 78 LFGSVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYACLAALVD 137 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 AVD PVT+K R GW +HRN EIA+LAE G+ A+ +HGRTR ++G+A++D IR VK Sbjct: 138 AVDRPVTVKFRAGWDEDHRNAVEIARLAEKAGVAAVAVHGRTRGQFYSGKADWDIIRQVK 197 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 + VSIPV+ NGD+ A +L T D +MI R AQG PWIFRE+Q L G+ +PP+ Sbjct: 198 EAVSIPVLGNGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIFREVQAVLA-GKTIPPV 256 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 L E ++ H+R+L F G R R H + Y + +R N Sbjct: 257 TLEERFAMVRRHLRDLTAFKGEKVAIREMRHHGACYFTGLPHSAHYRNAINQCLTKEAF 315 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 125/317 (39%), Positives = 174/317 (54%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG ++N +I APMAGI++ PFR + E G L +EM+S+N V +KS+ M Sbjct: 4 IGSLIIKNNVILAPMAGISNLPFRMMAREAGCALAFTEMISANGLVRGIEKSQQYMKSCI 63 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 + VQI G+DP MADA RI + GA +ID+NMGCP KKV + AG+ALL+ P +V Sbjct: 64 DDKPLGVQIFGNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVS 123 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 IL V A P+T+KIR+GW + N +IA++AE GI A+ +H RT F G A+ Sbjct: 124 QILESVRKATRKPLTVKIRSGWNLQSINAVQIARIAEQQGIDAVFVHARTAVQGFAGSAD 183 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 + I +K V I VI NGD+ A ++ TG D +MIGR A G PWIF E +Y Sbjct: 184 WRIIEEIKNSVGIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRGALGNPWIFNEALNYQS 243 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA 302 T + L E K ++ H+ F G + + RKH+ WY + FR Sbjct: 244 TVQTHSEPVLNERKEMILRHLERETIFLGQKEAVKRFRKHLLWYTKGIRGGASFRSRVTT 303 Query: 303 IEDASEQLEALEAYFEN 319 I D + L +EA+F+ Sbjct: 304 ISDQNLLLREIEAFFDQ 320 >UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteobacteria RepID=DUSB_VIBCH Length = 322 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 226/321 (70%), Positives = 264/321 (82%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG YQL+N LI APMAG+TDRPFR LC GAG+ VSEMMS NP +W++ KS+ RMVH Sbjct: 1 MKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E GIR+VQIAGSDP+ MA+AA+ +VE+GAQIIDINMGCPAKKVN+KLAGSALL+YPDV Sbjct: 61 EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDV 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ IL VVNAV+VPVTLK RTGW +++NC IAQLAEDCGIQAL +HGRTRAC++ GE Sbjct: 121 IEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGE 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYDSI+AVK VSIPVIANGDI P KAR VL+YTGADALMIGR AQGRPWIF+EIQH+ Sbjct: 181 AEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHF 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+ G +P LP++EVK ++ HV LH FYG G RIARKHVSWYLQEH FRRTF Sbjct: 241 LEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTF 300 Query: 301 NAIEDASEQLEALEAYFENFA 321 NAIE A +QL+ALE YF+N A Sbjct: 301 NAIETADQQLDALEGYFDNVA 321 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 122/320 (38%), Positives = 188/320 (58%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 +IG ++ + I APMAG++D +R L E GA L +EM+S+ ++++++ + Sbjct: 7 QIGAVKIDGQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRIE 66 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 D ++QI GS+P+ +A A++ +GA I+DINMGCP KKV GSAL++ PD+ Sbjct: 67 DVERPVSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPDLA 126 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + V AVDVPVT+K+R GW + N + A+ E G+ A+ +HGRT+ +++G A Sbjct: 127 ARVAEAAVEAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSGHA 186 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ I+AVK+ VS+PV+ NGDI +P A+ +LD TG DA+M+GR AQG PWIF I HYL Sbjct: 187 DWSYIKAVKEAVSVPVLGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPWIFGRIHHYL 246 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 TGE+LP E +L H L + G + R H WY++ + +R N Sbjct: 247 ATGEVLPGPTDIERLDMLLKHFDLLCQYKGEGMAVKEIRTHAGWYMKGLPESAYWRNRVN 306 Query: 302 AIEDASEQLEALEAYFENFA 321 I+ + LE+Y + + Sbjct: 307 TIQTVTSFHNELESYRKILS 326 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 121/316 (38%), Positives = 175/316 (55%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG L+N++I AP+AG+TD FR L EMG L +EM+S+ V +++ Sbjct: 1 MQIGSLALQNKVILAPLAGVTDSSFRILAREMGCALVFTEMISAKGAVCAPEQTLKIARF 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + +Q+ GSDP+ A A + ++DINMGCP KKV K G AL++ PD Sbjct: 61 TAQERPIGIQLFGSDPEIFARATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRDPDK 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +I V +A +PVT+K+R GW N E+A ++ G A+T+HGRTRA ++G Sbjct: 121 AYAITKAVCDAATMPVTVKMRKGWDDSEVNAVEVALAVQEAGAAAVTVHGRTRAQGYSGR 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I VK+ + +PV+ NGDI +P A+ +L TG DA+M+ R G W+ R HY Sbjct: 181 ADWSVIARVKEALRVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVLGNLWLIRRTVHY 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGELLP +AE RL C H++ + D G G R RKH++WYL+ Q R Sbjct: 241 LETGELLPEPEMAERVRLACRHLKMVVDEKGEYMGVREMRKHMAWYLKGMRGAAQVRNEI 300 Query: 301 NAIEDASEQLEALEAY 316 + E LE Sbjct: 301 MRAKTKEEMTAILENL 316 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 114/321 (35%), Positives = 175/321 (54%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG Q+ N ++ APMAG+ + FR E GAGL +EM+S ++ + K+ + Sbjct: 20 FKIGNVQINNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILFNNPKTMGMLYI 79 Query: 61 IDEPGIRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + ++QI G + + + AA+ + A IIDINMGCP K+ + AG+ L P+ Sbjct: 80 DEREKPLSLQIFGGEKETLVQAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDPN 139 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + ++ VV+AV+ PVT+K+R GW H E AQ E G QA+ +HGRTR ++ G Sbjct: 140 KIYDMVAAVVDAVEKPVTVKMRIGWDENHIYAVENAQAVERAGGQAVAVHGRTRVQMYEG 199 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +A+++ I+ VK+ V IPVI NGD+ P A+ +L+ TG D +MIGRAA G PW+ Sbjct: 200 KADWNVIKQVKEAVRIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGRAALGNPWMIYRTVR 259 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TGEL+P + E + H+ L + RKH +WYL+ N + R Sbjct: 260 YLETGELIPEPSVREKIEVCILHLDRLIALKNEYIAVKEMRKHAAWYLKGIRGNAKVRNA 319 Query: 300 FNAIEDASEQLEALEAYFENF 320 N + E + L ++ E Sbjct: 320 INECQTRDELVTLLMSFVEEV 340 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 177/320 (55%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG + + ++AAPMAG+TD+PFRT+ E L +EM+S + + + + Sbjct: 9 LRIGPWSVFPPVVAAPMAGVTDKPFRTVLKEHRCPLVYTEMISDKALTYANRNTMEILDI 68 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E VQI GS+P MA+AARI +GA IIDINMGCPA K+ R G+ LL+ PD+ Sbjct: 69 TGEARPIAVQIFGSEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPDL 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I VV AV VPVT+K+R GW+ E+A E G+QALT+HGRTR ++G+ Sbjct: 129 AVDIAEAVVRAVQVPVTVKMRIGWSSGRIVAPELAPRLEAVGVQALTVHGRTREMFYSGQ 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I ++VSIPVI NGD+ +P A +L TG A+MIGR G PWIF + H+ Sbjct: 189 ADWSVIAETVRQVSIPVIGNGDVWEPDDALRMLVETGCAAVMIGRGCMGNPWIFSRLVHW 248 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +TGE+ PP E H+ + G +G R R H+SWYL+ + R Sbjct: 249 AETGEMPPPPSPEERINQALLHLEHIVALKGEERGVREMRGHLSWYLKGIRGASRLRAEI 308 Query: 301 NAIEDASEQLEALEAYFENF 320 N D + L + E Sbjct: 309 NQAPDRESVVRLLTEHREQV 328 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 113/320 (35%), Positives = 183/320 (57%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M++G+ L N +I APMAG+TD P+R + + GL EM+S+ V+ + K+ ++H Sbjct: 4 MKLGKLTLDNCIIVAPMAGVTDYPYRRILAKFSPGLICGEMVSAKGMVYGNKKTEEMVIH 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ + QI GSDPK MADAA G ID+NMGCPA K+ + GSALL+ P + Sbjct: 64 HNQGVHYSQQIFGSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + I+ E+VN+V++PVT+KIR G+ + + E+A ++ GI+AL +HGRT ++G+ Sbjct: 124 AQEIVREIVNSVNLPVTVKIRKGFDRKSSDPLELALRLQEVGIKALAVHGRTCEQQYSGK 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+++ + +K + IPVI NGDI A + L+ T D +M+GR G PW+ + + Sbjct: 184 ADWEVVAKLKNYLDIPVIGNGDIFSSEDAVSALEMTACDGIMLGRGLMGNPWLIEQTKGM 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L E + + E+K + +H +YG +KG RKH+SWYL+ + + Sbjct: 244 LIKDEKIESPEIHEIKNEMKSHFENAIKYYGESKGIAEMRKHISWYLKSLPGSTSIKDEV 303 Query: 301 NAIEDASEQLEALEAYFENF 320 + D ++ +L YF+ Sbjct: 304 MRLTDVNQIWFSLNEYFQAL 323 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 364 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 129/322 (40%), Positives = 184/322 (57%), Gaps = 3/322 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++G Y + N+LI APMAG+++ PFR + ++GAG+ +EM+S +++ K+ + Sbjct: 3 FKLGNYVVENKLILAPMAGVSNHPFRLMARQLGAGVVFAEMVSDKAIFFQNPKTLQMLYM 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKV-NRKLAGSALLQYP 118 E QI GSD + M +AA I+ S IDINMGCP KV AG++L++ P Sbjct: 63 TVEEKPAAQQIFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLMKDP 122 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + I+ + V PVT+KIR+GW E N E+A++ E G +T+H RTRA ++ Sbjct: 123 QKIYDIVKAIKEKVSKPVTVKIRSGWDSESVNAVEVAKMIEKAGASLITVHARTRAQGYS 182 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 GE + D I+AVK+ VSIPVI NG+I D A+ +L+YTG DA+MIGRA+ G PWIFREI Sbjct: 183 GEPDLDVIKAVKEAVSIPVIGNGNIVDGKSAKHMLEYTGCDAVMIGRASLGNPWIFREIN 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL+ GE P EVK L+ H +L G R H WYL+ Q R Sbjct: 243 AYLN-GEETPVRTYEEVKTLMIRHFDDLAKLKGEHTACLEMRSHGPWYLKGLPKASQVRA 301 Query: 299 TFNAIEDASEQLEALEAYFENF 320 + +E +E LE YF++ Sbjct: 302 KLARTTNRAEYMENLEMYFDDV 323 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 171/321 (53%), Gaps = 2/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IG N + APMAG TD FR +C E+G GL +EM+S+ +ES+ ++ V Sbjct: 1 MNIGNLIFHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYESNNTKELCVI 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 ++ +Q+ G +P+ MA+A N I+D+NMGCPA K+ + GSAL++ P Sbjct: 61 SNKEKPVALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPK 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I+ + P+T+K R G+ + N E A++ E G+ A+TIHGRTR ++ G Sbjct: 121 LASEIIKAMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +A++ I VK VSIPVI NGD+ A +++ T D +MIGR AQG PWIF++I Sbjct: 181 KADWAIISKVKNSVSIPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQGNPWIFKQINE 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + GE + E + H ++ +++ K R RKHV+ Y++ + Sbjct: 241 KI-KGEHVYYPTPQERIDICINHYKKSLEYFEEHKAVREMRKHVAVYVKGLKNCTDIKDK 299 Query: 300 FNAIEDASEQLEALEAYFENF 320 N +D + LE L Y E Sbjct: 300 VNMEKDPDKVLEELIKYRETL 320 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 120/317 (37%), Positives = 178/317 (56%), Gaps = 1/317 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG QL+NR++ APMAG+ + FR E GAGL +EM+S ++ + ++ + Sbjct: 2 FKIGDIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYI 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + ++QI G + + +AA+ + A IIDINMGCP K+ + AG+ L PD Sbjct: 62 DEREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPD 121 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + +++ VV+AV+ PVT+K+R GW +H + AQ E G +A+ +HGRTR ++ G Sbjct: 122 KIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEG 181 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A +D I+ VKQ VSIPVI NGD+ P A+ +LD TG D +MIGRAA G PW+ Sbjct: 182 TANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMIYRTVQ 241 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TG+L + E + H+ L D G R RKH +WYL+ N R Sbjct: 242 YLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKHAAWYLKGVKGNANVRNE 301 Query: 300 FNAIEDASEQLEALEAY 316 N E E ++ L+A+ Sbjct: 302 INHCETREEFVQLLDAF 318 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 361 bits (928), Expect = 1e-98, Method: Composition-based stats. Identities = 116/321 (36%), Positives = 169/321 (52%), Gaps = 2/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M I +++ ++ APMAGITD R L G GL +EM+S+N V D +R + Sbjct: 20 MIIKSLHIKHNILLAPMAGITDLACRLLMRPYGIGLAFTEMISANGLVLGGDATRDLLAS 79 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +Q+ G +PK ++ A + G +ID+N+GCP KKV R AGSAL+Q P Sbjct: 80 TPSDRPLGIQLFGENPKYLSQACKQVESHG-DLIDLNIGCPVKKVVRSGAGSALMQTPAR 138 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V I+ + A +P+T+KIR GW H N EIA +AE G+ A+T+H RTR+ F+G Sbjct: 139 VAQIIAAMRRATHLPLTVKIRAGWDASHINFLEIAHIAEQEGVDAITLHPRTRSQGFSGS 198 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A +D I +K++ +IPVI +GDI + A+ +L TG DA+MIGR G PW+ R+I Sbjct: 199 ANWDLIAELKRRSTIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGNPWLARDILAM 258 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 G+ P+ E + H+ F K RKH+ WY + QFR + Sbjct: 259 RQ-GQTPAPVTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLPGAAQFRSSI 317 Query: 301 NAIEDASEQLEALEAYFENFA 321 N E + +FE+ A Sbjct: 318 NRAMSIEEMRTLVMHFFEHAA 338 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 180/324 (55%), Gaps = 6/324 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG +++ +L+ PMAG+++ PFR + E GA L +EM+S + K+ + Sbjct: 1 MKIGNVEIKGKLVQGPMAGVSNPPFRLISKEKGADLVCAEMVSVEGMTHNNKKTFSMLAV 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKV-NRKLAGSALLQYP 118 + ++QI G+D + A + IID+N+GCPA KV R +GS+LL+ P Sbjct: 61 EKKEHPMSMQIFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTP 120 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +++ I+ VV PVT KIR GW E N E+++L E G +T+HGRTR+ ++ Sbjct: 121 ELIYDIVKAVVENTSKPVTAKIRLGWDKESVNAVEVSKLIEKAGASGITVHGRTRSEFYS 180 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A+++ I+ VK+ V+IPVI NGD+ D A+A+L+ TG D +MI R QG PWIFREI Sbjct: 181 GHADWEKIKEVKEAVNIPVIGNGDVIDGPSAKAMLELTGCDGVMISRGCQGNPWIFREIA 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFY-GPAKGYRIARKHVSWYLQEHAPN---D 294 H+L+TGE L AE K + H + L D+ R RKH++WY + Sbjct: 241 HFLETGEELDKPSFAEWKETVLKHAKMLIDYKQDEGSAIREFRKHLTWYFAALPKTEILN 300 Query: 295 QFRRTFNAIEDASEQLEALEAYFE 318 Q + N I S+ +E Y E Sbjct: 301 QLKEEANKINTFSDLENIIEKYKE 324 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 359 bits (923), Expect = 6e-98, Method: Composition-based stats. Identities = 122/319 (38%), Positives = 176/319 (55%), Gaps = 3/319 (0%) Query: 1 MRIGQYQLRN-RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG L N L+ APM ++D PFR +C E GA L +E +SS + ++ KSR ++ Sbjct: 2 VKIGNITLGNFPLLLAPMEDVSDPPFRAVCKEKGADLMYTEFISSEGLIRDAIKSRRKLD 61 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D +QI G D + MA AA+I + ++DIN GCP KKV K AGS +L+ Sbjct: 62 IFDYERPVGIQIFGGDEEPMAMAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKDIP 121 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + + VV A +PVT+K R GW + +N EE+A+ +D GIQALTIHGRTR ++ G Sbjct: 122 KMVKLTAAVVKATKLPVTVKTRLGWDDDTKNIEEVAERLQDVGIQALTIHGRTRTQMYKG 181 Query: 180 EAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 A++ I VK IP+ NGDI P +A A + G D +MIGRAA G PWIF EI Sbjct: 182 HADWTLIGKVKNNPRIHIPIFGNGDICTPEQAIAAREKYGVDGVMIGRAAIGYPWIFNEI 241 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 +H++ TGE LPP + E + H++ + G G R+H + YL+ +FR Sbjct: 242 KHFMQTGEHLPPPSVLERVEVCKKHLQHSVQWKGDVVGILEMRRHYTNYLKGLPHIKEFR 301 Query: 298 RTFNAIEDASEQLEALEAY 316 + + + L+A Sbjct: 302 QQLVTCSTLAAVEDVLDAI 320 >UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonellaceae RepID=C9KMX2_9FIRM Length = 322 Score = 359 bits (923), Expect = 6e-98, Method: Composition-based stats. Identities = 123/319 (38%), Positives = 182/319 (57%), Gaps = 1/319 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG++ + + APMAG+TD +R + ++MG L +EM+SS + ++++ + Sbjct: 1 MKIGEFSFKTPVFLAPMAGVTDTAYRIIAHDMGCPLCFAEMVSSQGIHFRNERTLAMLQS 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 E +QI + P+ A+AA G A I+D NMGCPA K+ + GSAL++ P+ Sbjct: 61 EKEERPLAMQIFANTPEMAAEAAAFVEALGTADILDFNMGCPAPKIVKNGEGSALMRDPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +IL+ + AV +PVT+K+R GW N E+A+LAE+ G+ A+ +HGRTR + G Sbjct: 121 RAFAILSAIRKAVKMPVTVKMRKGWDAASVNVVEMAKLAEEAGVDAIAVHGRTREQFYTG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A+++ I VK+ V IPVIANGD+ + TG D +MIGRAAQG PWIFR+ H Sbjct: 181 RADWEIIGEVKRAVKIPVIANGDVRTFDDLDKIRAVTGCDGVMIGRAAQGNPWIFRQFTH 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TGE LP + E ++ H+ L + G G R RKH +WY + R Sbjct: 241 YLETGERLPGPTMKERAAVILRHLDLLLKYKGDYVGPREMRKHATWYTRGIVHGAILRDR 300 Query: 300 FNAIEDASEQLEALEAYFE 318 FN + +E LE YFE Sbjct: 301 FNKAVTREDFVEILEEYFE 319 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 1/312 (0%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 ++ ++ APMAG TD+ FR LC GA +TV+EM+SS V S K++ + +E Sbjct: 2 LDIKGKIFLAPMAGFTDKVFRRLCSRFGADVTVTEMISSKALVLGSAKTKDLISFSEEEK 61 Query: 66 IRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 IR VQI G+DP+ MA + +I + IDINMGCP K+ R G AL++ P + I Sbjct: 62 IRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSLAAKI 121 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + EV PV++KIR G+ E+ N E A + ++ G +T+HGRTRA L++G+A+++ Sbjct: 122 VEEVAKVSRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSGKADWE 181 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 IR VK+K+ IPVIANGDI D A+ + T AD++MIGRAA G PW+F +I+ + G Sbjct: 182 IIRKVKEKLKIPVIANGDIVDFESAKKAYEVTRADSIMIGRAALGNPWVFLQIKEGFEKG 241 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + + R+ +L G ARKH+S++++ + R N I Sbjct: 242 YVETKVLPHMKIRVAIEFFTQLCSEKGDKMAVLEARKHLSFFVKGIENAAKIRDKINRIN 301 Query: 305 DASEQLEALEAY 316 +A+E LE L+ Sbjct: 302 NATELLEFLKEL 313 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 352 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 128/318 (40%), Positives = 195/318 (61%), Gaps = 1/318 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV- 59 ++IG +L + +I APM+G+TD FR L GAGL VSEM++S + ES +S + Sbjct: 2 IKIGNIELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMIASRAMIVESRQSLQKCSI 61 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D+ VQ+AG +P +A+AA++N + GA+IID+N GCPAKKV +GSAL++ Sbjct: 62 MQDDATSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEG 121 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I V AV +PVT+K+R GW + +N +A++AE GIQ +T+HGRTR ++G Sbjct: 122 LAAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQFYSG 181 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A+++ I+ VK+ V IPVIANGDIT+ KA+ L+ + AD +M+GR A G+PW+ +I H Sbjct: 182 NADWEFIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPWLISQIDH 241 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL TGE P + ++ H + + D+YG + G IARKH+ WY + +FR Sbjct: 242 YLKTGEEKPAPSIESQLDIVLEHYQAIVDYYGESAGVPIARKHMGWYSSGLPNSAEFRGA 301 Query: 300 FNAIEDASEQLEALEAYF 317 N + D + + ++ Sbjct: 302 VNLMNDPIAVKDKIVEFY 319 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 199/319 (62%), Positives = 235/319 (73%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIGQY LRN LI APMAG+TD+PFRTLC +GAG+ VSEM+SS+ +W S KS LR +H Sbjct: 4 VRIGQYTLRNNLILAPMAGVTDQPFRTLCQRLGAGMVVSEMVSSDMSLWNSRKSSLRRIH 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +P R+VQIAG D + MA AA+ NVE+GAQIIDINMGCPAKKV K AGSALL+ + Sbjct: 64 EGDPEPRSVQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEAL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV+AVDVPVTLKIRTGW ++N +A++AE GIQAL +HGRTRA L+ GE Sbjct: 124 VSEILHAVVSAVDVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTRADLYTGE 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I A+KQ VSIPV ANGDIT P KARAVL+ TG D L+IGRAAQGRPWIFREI+HY Sbjct: 184 AEYDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFREIEHY 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L TGE LP L EV+R+L H+ LH FYG G RIARKHV WYL +FR F Sbjct: 244 LRTGEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGKEFRARF 303 Query: 301 NAIEDASEQLEALEAYFEN 319 NA+ED Q + A+F Sbjct: 304 NALEDTQAQCANVRAFFSE 322 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 127/318 (39%), Positives = 187/318 (58%), Gaps = 2/318 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +I ++ N ++ APMAG D FRT+C E GAGL +EM+S+ V + ++ + Sbjct: 3 FKIADIEIENNVVLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYM 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRK-LAGSALLQYP 118 + +QI G+D A + I + +DINMGCP KV +K AG+ALL+ Sbjct: 63 ENSEKPLGIQIFGTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDV 122 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + + ILT VV AV PVT+K+R GW ++ N E+A+ ED G+ A+ IHGRTR ++ Sbjct: 123 NRIHEILTAVVKAVHKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQMYT 182 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G+A +D IR V++ V I VI NGD+ P A+A++++TG DA+M+GRA++G PWIFR+I Sbjct: 183 GKANWDIIRDVRKAVDIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIA 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL+TGEL+PP E +L H+R L + R H S+YLQ+ + +FR Sbjct: 243 KYLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRM 302 Query: 299 TFNAIEDASEQLEALEAY 316 N +E E + LE Y Sbjct: 303 KLNQLEHEQEIFKILEEY 320 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 158/311 (50%), Positives = 205/311 (65%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 + APMAGITDR +R +C E GA VSEM++S Q+ ES KS R E R V Sbjct: 10 PTIALAPMAGITDRVYRDICRESGASYAVSEMVASKKQLRESAKSSTRHADKTETSPRIV 69 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G+ P+E+ DAA GA IID+NMGCPAKKV AGSAL+ P+ V I + Sbjct: 70 QLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADIFKSLT 129 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 A+D+PVT+KIRTG ++ N EIA+LA++ G++A+TIHGRTRA FNG+AEYD+I+AV Sbjct: 130 EAIDLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTRADKFNGQAEYDTIKAV 189 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 KQ V IPVIANGDI P +A+ VL YTG+D +MIGRAAQG PWIFREI H+L TG+ LP Sbjct: 190 KQAVDIPVIANGDICSPKEAQFVLKYTGSDGIMIGRAAQGYPWIFREIAHFLKTGDCLPS 249 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 AE ++++ H EL YG G++IARKH+ WY Q + R+ FN +E+ Q Sbjct: 250 PSFAEFQQVMTRHFSELEILYGEHLGHKIARKHLGWYSQYLPNGTELRKRFNRLENTQAQ 309 Query: 310 LEALEAYFENF 320 L + YF+ Sbjct: 310 LNLINHYFDTL 320 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 179/320 (55%), Gaps = 1/320 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I +L N L+ AP+AG+T+ P R + GA L SEM+SSN + K+ M Sbjct: 2 LKIASLKLDNPLVCAPLAGVTNLPLRLMAKRHGAALVCSEMISSNGLIRYQKKTMELMAS 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +E ++QI GSDP +AD+ARI E GA I+DIN GC KKV + AGSAL+ Sbjct: 62 KEEERPLSIQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADLPR 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + IL EV A+ +P T+K+R+GW + ++A+D G+ A+ +H RT F+G Sbjct: 122 AEKILKEVRKAISLPFTIKMRSGWDASGDEAMALGRIAQDAGVDAVALHPRTAKQGFSGH 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +++ I+ +KQ+++IPVI NGD+T P +++ TG D +MIGRA PWIFR+ Sbjct: 182 SDWSQIKRLKQELTIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRAVLYAPWIFRQAL-C 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L + + L + K++L ++ + D+ G G R+ R ++W+++ +FR Sbjct: 241 LLENRPMEEIDLDDRKKVLFDYLDDTMDYLGEEHGCRVMRSRLAWFVKGLPNAAKFRGEI 300 Query: 301 NAIEDASEQLEALEAYFENF 320 I + + +E +F + Sbjct: 301 TRIASKEQARDLIEEFFRSI 320 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 116/321 (36%), Positives = 176/321 (54%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG L LI APMAG TDR FR L E GA LT +EM+S+ ++ + + + Sbjct: 5 LKIGPVTLAAPLIMAPMAGYTDRVFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDL 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 EPG VQ+ G +P+ MA A RI V +GA IID+NMGCP K+ + GSAL++ Sbjct: 65 KGEPGPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPR 124 Query: 121 VKSILTEV-VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +I+ + A VPVT+K+R GW + N E A+ G A+ IHGRTR+ ++G Sbjct: 125 AAAIVAAMVRAAGPVPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ R VK+ V +PVI NGD+ A +L TG D +M+GR A G PW+ I+ Sbjct: 185 RADWSYFRRVKEAVDVPVIGNGDVRTARDAVTMLAETGCDGVMVGRGAVGNPWLLTAIRA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 L+ PP+ + + C H++ L + G + RKH++ Y + + R+ Sbjct: 245 VLEGRPEPPPVDVRTRMTMACRHLKLLVELKGETTAVKEMRKHLACYFRGLPGAARLRQQ 304 Query: 300 FNAIEDASEQLEALEAYFENF 320 N + A+E + A++AY ++ Sbjct: 305 INTLTTAAEVIAAIKAYLRDY 325 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 157/322 (48%), Positives = 212/322 (65%), Gaps = 2/322 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG YQL++++ APMAG +D+PFR +C GA LT SEM+ + ++KS+ R+ Sbjct: 3 IQIGAYQLKSQVFLAPMAGTSDKPFRAICRAQGAALTTSEMVVIQKHLLGTNKSKHRLDF 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 EP ++QIAGS E+A +A+ ++ GA IIDINMGCPAKKV K AGSAL+Q + Sbjct: 63 SGEPAPISIQIAGSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEAL 122 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 VKSIL VV+AVD+PVTLK+RTGW ++N IA++AE+ GIQ L++HGRTR + G Sbjct: 123 VKSILNAVVSAVDIPVTLKMRTGWNVSNKNAPTIAKIAEEAGIQMLSVHGRTREDKYTGM 182 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+I+AVK +V IPVIANGDIT KA++VL YTGAD +M+GRA QG PWI EI HY Sbjct: 183 AEYDTIKAVKSQVGIPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNPWIIHEIDHY 242 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEH--APNDQFRR 298 L TG+ +PL K+ + H++++H FYG G +++RKH+ WY F Sbjct: 243 LKTGQKATDIPLNVKKQTILDHIKQIHAFYGEKLGTQLSRKHIFWYATHLDEKNAQTFWE 302 Query: 299 TFNAIEDASEQLEALEAYFENF 320 N I D Q + LE Y Sbjct: 303 KVNKITDHKLQYQLLENYLHQL 324 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 177/323 (54%), Gaps = 3/323 (0%) Query: 2 RIGQYQL-RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +IG ++ L+ APM ++D PFR LC E GA + +E +SS + E+ KS +++ Sbjct: 3 KIGNIEVGDFPLLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIREAAKSTMKLDI 62 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ +QI G++ + M + I +SG IIDIN GCP KKV K AG+ +L+ D+ Sbjct: 63 YEKERPVGIQIFGANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKDIDL 122 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + S+ +V +P+T+K R GW + E+A+ +D G +A++IHGRTRA ++ GE Sbjct: 123 MVSLTEAMVKNTSLPITVKTRLGWDHDSIKIVEVAERLQDVGCKAISIHGRTRAQMYKGE 182 Query: 181 AEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A++ I VK IPV NGD+ P KA + D G D MIGRA+ G PW FRE++ Sbjct: 183 ADWAPIAEVKNNPRMHIPVFGNGDVDSPEKAMEMRDNFGLDGAMIGRASIGYPWFFREVK 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 HY +TG+ L P L E H++ D+ G G R+H + Y + ++R Sbjct: 243 HYFETGKHLAPPTLEERVDAARRHLQMAIDWKGERLGVFETRRHYTNYFKGIPHFKEYRM 302 Query: 299 TFNAIEDASEQLEALEAYFENFA 321 +D+ + +A + + FA Sbjct: 303 KMVTSDDSVDVFKAFDEVEKEFA 325 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 171/310 (55%), Gaps = 1/310 (0%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 +L ++ APMAG+TD P+R LC EMG L+ +EM+S+ + + + +VH EPG+ Sbjct: 36 ELPGNILMAPMAGVTDLPYRILCKEMGLSLSFTEMVSAKAIYYGNQNTDSLLVHKGEPGL 95 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 + Q+ GSDP MA+ A E ID+NMGCP KV R GSAL+ + + +L+ Sbjct: 96 VSAQLFGSDPALMAEMACRIEE-DFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAEQVLS 154 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + A+ P+T+K R G+ + N E A++AE G+ ++TIHGRTR + G+A + I Sbjct: 155 TMAKALKKPLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTREQYYRGKANWQYI 214 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + K+ V IPV NGDI A A+L TG D + + R QG P++ R L G+ Sbjct: 215 KEAKEAVKIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGNPFLIRACVSLLSEGKK 274 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 LPP+ L+E K ++ H++ + + G RKH+SWY++ ++R+ N D Sbjct: 275 LPPVSLSERKEMMLRHLKLMVEIKGEHLALLEMRKHLSWYMEGLENAARWRQRVNTENDL 334 Query: 307 SEQLEALEAY 316 + + + Sbjct: 335 EKVFQMVREL 344 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 102/319 (31%), Positives = 164/319 (51%), Gaps = 3/319 (0%) Query: 1 MRIGQYQLR-NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 MRIG L APM ++D PFR LC GA + +E +SS + E + ++ Sbjct: 65 MRIGHLDFDDRPLFLAPMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLREQEHEHQKLE 124 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 DE +Q+ G E+ +A + +G +IDIN GCP +K+ +K G+ +L+ D Sbjct: 125 IFDEERPIGIQVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLD 184 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +++I V+ PVT+K R GW + + ++A++ ED G+ ALT+H RTR + G Sbjct: 185 KMRNITAAVMEEATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKG 244 Query: 180 EAEYDSIRAVKQK--VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 +A ++ +R +K++ +P I NGD DP A+ + TG D +M+GR A G PWIF Sbjct: 245 DARWEWLRTIKEEGTRDMPFIGNGDALDPEAIEAMFEETGVDGVMLGRGALGNPWIFERA 304 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 + Y++TGEL PP E +++ H+ ++ G G RK+ S Y + R Sbjct: 305 KTYMETGELPPPPDWEERVQVVAEHLSLKCEWLGERTGVMEMRKNYSSYFKGFRNASTLR 364 Query: 298 RTFNAIEDASEQLEALEAY 316 E + LE + + Sbjct: 365 HELMQPETKAGVLEVMLNF 383 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 170/316 (53%), Gaps = 3/316 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMV 59 ++IG L +R++ +P++G+TD FR L + +EM+S+ M Sbjct: 33 LQIGSLTLHSRVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEI-HHLRTLPQVME 91 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 ++Q+ P MA+AA+ V GAQ +DINMGCP K+ +K GS+LL+ P Sbjct: 92 IDPRENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPA 151 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 V ++I+ VV AVDVPVT+K R GW N E AQ +D G Q LT+HGRTRA +NG Sbjct: 152 VAEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQGYNG 211 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A + I VKQ ++IPVIANGDI A A L+ TGAD +M R + G P++ EI+H Sbjct: 212 RARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEIEH 271 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + TGE +AE H++ L ++ G +G ARKH++WY ++ R Sbjct: 272 FFKTGEKRKAPTVAEKLTCAQEHLQMLWEYKGQ-RGLFQARKHLAWYCKDFPGAAALREQ 330 Query: 300 FNAIEDASEQLEALEA 315 I E + L+ Sbjct: 331 LFQINSVQEGKDLLDQ 346 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 176/321 (54%), Gaps = 1/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG L R I AP+AGITD PFR L G L SEM+SS+ ++S+K+ + Sbjct: 1 MRIGPVFLAGRTILAPLAGITDAPFRRLAKAAGCALVYSEMVSSHGLFYQSEKTGAMLRT 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E VQI G P M AA + SGA +IDIN GC KK+ + AG+AL++ + Sbjct: 61 TPEEAPFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ V +AV +P+T+K+R+GW P+ + +A++AE G+ A+ +H RT F G Sbjct: 121 AAEVIQAVRDAVSIPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRTATQGFGGT 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ I A+KQ+ +PVI NGDI P AR +LD TG DA+M+GRAA G PWIF++I Sbjct: 181 ADWSLIAALKQRTGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAPWIFKQINAC 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L G+ + L ++ ++ + YG R+ R + W+ + FR + Sbjct: 241 LA-GKPVVEPSLEHRFEVMSEYINAMVAHYGEDLACRVMRSRLGWFTRAMPHGTLFRESI 299 Query: 301 NAIEDASEQLEALEAYFENFA 321 IE + L A+ Y E A Sbjct: 300 RRIETKDQVLAAVSDYRERLA 320 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 148/312 (47%), Positives = 197/312 (63%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + L APMAG++DRPFR LC E GAGL V+EMMS+ P++ S KSRLR + ++ Sbjct: 19 PVIIDPPLALAPMAGVSDRPFRQLCREYGAGLVVTEMMSAKPELQSSAKSRLRQIDSNDI 78 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 R VQ+ G+DP E+A+AAR V GAQ+ID+N+GCPAKKV ++ AGSAL+ PD V + Sbjct: 79 EPRAVQLLGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPDTVARL 138 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 L +V AVD PV+LK+RTG E RN IA++AE+ GI L+IHGRTRA + GEAEYD Sbjct: 139 LEALVAAVDCPVSLKMRTGPDREWRNAVAIAKIAENAGISMLSIHGRTRADRYEGEAEYD 198 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 +I V V +PV ANGDIT P KAR V+ +TGA +M+GR A G+PWIF ++ L Sbjct: 199 TIAEVVAAVDLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPWIFSALKAELTGQ 258 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 L P AE + +++ YG + G RIARKH+ WY ++ R FN E Sbjct: 259 PLPSPPDRAERVVAIKKQFEKIYHHYGDSLGIRIARKHLGWYAASLELGEEDRAVFNRFE 318 Query: 305 DASEQLEALEAY 316 +Q + L + Sbjct: 319 HPEQQRQWLAQH 330 >UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes RepID=Q5FMA1_LACAC Length = 342 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 108/320 (33%), Positives = 176/320 (55%), Gaps = 1/320 (0%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 +I + NR++ APMAG+++ FR +C E GAGL V EM+S + ++ + K+ M Sbjct: 7 KIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGAGLVVCEMISDHGIIYRNKKTLSMMDVD 66 Query: 62 DEPGIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++QI G + + AA+ I+ + A IIDINMGCP KV + AGS L + Sbjct: 67 PREHPMSIQIFGGTEETLLQAAQYIDQNTDADIIDINMGCPVPKVTKTDAGSKWLLDSNK 126 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + ++ VV V PV++K+R GW +H E A A++ G + +HGRTR ++ GE Sbjct: 127 IYQMVHAVVQNVQKPVSVKMRIGWDRKHVFAVENALAAQEAGASMIAMHGRTRKQMYQGE 186 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+++ + V Q + +P +ANGDI P A+ LD G A+M+GRAA G PWI +++ HY Sbjct: 187 ADWEVLHDVAQVLDVPFVANGDIATPELAKKALDDIGCTAVMVGRAALGNPWILKDMVHY 246 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+TGE LPP + E ++ L + +G + R+ ++YL+ + + R Sbjct: 247 LETGETLPPQTVREKVETAKHQLQGLIEIHGEKRAVPEFRQQAAYYLKGIPRSARTRAKI 306 Query: 301 NAIEDASEQLEALEAYFENF 320 N + E + L+ + + + Sbjct: 307 NEVWTRQEVYDLLDNFVDEY 326 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 174/320 (54%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 RIG QL + APMAG++D +R + +MGA LT +EM+S+ + ++K++ + Sbjct: 5 RIGNIQLDGFALLAPMAGVSDLAYRVIARKMGAALTTAEMVSAKGLYYHNEKTKDMLKIA 64 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 +E ++Q+ GSDP MA A++ ++GA I+DINMGCP +KV + GSAL++ + Sbjct: 65 EEEHPVSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVTLA 124 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I++ V AV +PVT+K+R GW+ + N E+A AE G A+T+HGRTR + G A Sbjct: 125 AEIISAVTAAVKIPVTIKMRLGWSRDTINAVELAMAAESAGAAAITVHGRTREDFYMGTA 184 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ I+ V V IPVI NGD+ D A+A+++ TG A+ IGRAA G PW+F + YL Sbjct: 185 DWREIKKVVDAVRIPVIGNGDVGDGPAAKALMEETGCAAVAIGRAAWGNPWVFGAVNTYL 244 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 +TGE+LP E + H+ L G R R H S Y RR Sbjct: 245 ETGEILPGPSWEERLAMARKHLHGLCVEKGERIAVREMRAHASRYFHGLPKATVLRREIM 304 Query: 302 AIEDASEQLEALEAYFENFA 321 E L Y + Sbjct: 305 KALTEEEFGRILTGYEKELG 324 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 103/315 (32%), Positives = 167/315 (53%), Gaps = 3/315 (0%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + L AP+AG +D FR +C GA + SEM+S++ S K+ + + Sbjct: 8 KPLLFLAPLAGYSDSAFRQICKNWGAEVLYSEMVSADGLTRNSAKTLQYVQFDESEHPFG 67 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +QI GS+P MA A + + +DINMGCP KKV RK AGSAL+Q P + I+ EV Sbjct: 68 IQIFGSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKIVKEV 127 Query: 129 VNAV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 NA+ +P+++K R+GW +++N + + ++CG L +H RT + +F+G + ++ I Sbjct: 128 KNALLGRIPLSVKFRSGWNFQNQNYLQFGLMLQECGADFLCLHPRTSSQMFSGTSNWEQI 187 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + +KQ V IPV+ NGDI P A+ ++ T D +MIGR A G+PW+F + + + TG Sbjct: 188 KILKQNVQIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKPWLFAQSRQLISTGTY 247 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P + E+ + + AH+ + + R R H+ +Y + + R N E+ Sbjct: 248 NPVI-QKEIVKTIFAHLDKALLYKSEDVVVREMRAHLCFYTKGILGGAELRNQINHTENI 306 Query: 307 SEQLEALEAYFENFA 321 SE + F Sbjct: 307 SELKAIILKGFSRIG 321 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 170/322 (52%), Gaps = 10/322 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG Y L N I APMAG+++RPFR + ++ GA L +E++S+ + + ++ + Sbjct: 34 LQIGPYSLPNPYILAPMAGVSERPFRVIAFKWGAALCPTELVSAQGLMRANQRTLKYLRF 93 Query: 61 IDE-PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 E ++QI G +P+ MA AA + GAQIIDINMGCP KKV + AGSAL+ P Sbjct: 94 SPEVERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPL 153 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 I+ + A +PVT KIR+GW HRN ++A G AL IH RTR ++G Sbjct: 154 RAARIVQAIAEATGLPVTCKIRSGWDAHHRNYLQMAGELFSAGCAALAIHPRTRDQGYSG 213 Query: 180 EAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A++ I +K+ +I NGD+ P AR + + TG D +MIGR A G PWIFRE+ Sbjct: 214 FADWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGRGALGNPWIFRELA 273 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKG-YRIARKHVSWYLQEHAPNDQFR 297 PP E + H R +F G G R R+H++WY FR Sbjct: 274 GG-------PPPTPEERCAGVLEHFRAHVEFVGEPLGAVRSFRRHMAWYAHGLHGAAAFR 326 Query: 298 RTFNAIEDASEQLEALEAYFEN 319 N +E + +A+ +F + Sbjct: 327 AEVNTLETPASVEDAVVRFFAS 348 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 2/317 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++G L N + AP+AG +D PFR + GL EM+ + V + + Sbjct: 7 FQLGNLTLPNPVFYAPLAGCSDFPFRQMSARYSPGLMYCEMVKMDALVRHDPNTFRMLDF 66 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + Q+ GS P+ A AA+I + G ++D+N GCP KV + +GS LL+ P + Sbjct: 67 DKDMHPIGGQLCGSKPQLAAKAAKIIEDLGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLL 126 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + IL+E+V AV +PVT+KIR GW E+ EEI Q+AE G +A+TIHGRTR + G Sbjct: 127 IGEILSEMVAAVKIPVTVKIRAGWDDENLCAEEITQIAEKAGAKAITIHGRTRQQAYRGP 186 Query: 181 AEYDSIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A +D I+A KQ I VI NGD+ DP A+ + +YTG DA+++ R G+PWI ++I + Sbjct: 187 ANWDHIKASKQVAKHIKVIGNGDVMDPTSAKRMFEYTGCDAVLVARGTMGQPWIAQDILN 246 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL G + P + ++ L H +Y P + R+ WY++ +FR Sbjct: 247 YLQGGTIRVHTP-EDCRQALYEHFLCTERYYNPRQVVIEMRRVGCWYIKSSGGTREFRGL 305 Query: 300 FNAIEDASEQLEALEAY 316 + + + ++ + Sbjct: 306 ISRASSPDQVKDLIQNF 322 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 157/316 (49%), Gaps = 3/316 (0%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 ++ N ++ APMAGITD FR +C E G T +EM+S N + + + M Sbjct: 5 KIFNEIMLAPMAGITDSAFRQICEENGCDKTFTEMVSVNALDFNNRATEEIMYTAYSEKN 64 Query: 67 RTVQIAGSDPKEMADAAR--INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +QI G D + + IN + I NMGCPA K+ GSAL++ V I Sbjct: 65 CNIQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKKVYEI 124 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + D V +KIR G + N E+ + ED GI + +HGRTR ++G+A + Sbjct: 125 GKCLKESTDKIVNVKIRMGIDDDSVNYIEVGKALEDSGIDYVILHGRTRKQQYSGKANWQ 184 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 +IR +K+ +SIPVIANGD+ + +LD TGAD +MI R A G P+IFR+I+ Y+ G Sbjct: 185 AIRKLKETLSIPVIANGDVFSVKDYKDILDETGADGVMIARGAMGNPFIFRQIKDYIQ-G 243 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + P+ ++ + + RKHV WY++ +R N ++ Sbjct: 244 KETSPISYEDILATIKRQYELSLKYKKEKLVINQMRKHVGWYIKGLPQAASYRDRVNKLK 303 Query: 305 DASEQLEALEAYFENF 320 + E + LE Y + Sbjct: 304 TSEEIFDLLEEYRKFL 319 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 158/315 (50%), Gaps = 11/315 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 L + L AP+AG+TD PFR LC E+GAGL +EM+S+ ++ K++ + Sbjct: 1 MNLNSNLFLAPLAGVTDIPFRILCGELGAGLCFTEMISAKGLYYDDKKTKKLLDTDPREK 60 Query: 66 IRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +VQI G +P+ +A A R + IDINMGCPA K+ + GSAL+ ++ + + Sbjct: 61 STSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAEDV 120 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + N D+PV++K R G N ++AQ+ E + +T+H RTR ++GEA++ Sbjct: 121 IRACKNNTDLPVSVKFRLGIDENSMNYMQLAQICERLKVDYITLHARTRKMFYSGEADWL 180 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I+ V + V IPV NGD R ++Y+ D +++ R A P+IF + Sbjct: 181 HIKRVVENVDIPVFGNGDCFTKEDIRKNMEYSNCDGVLLARGAMQNPFIFSD-------- 232 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 EV + H++ +FY + RKH+ WYL+ +++ + N + Sbjct: 233 --DENKSKEEVIDTIKKHMQLKLEFYEERRAILEMRKHIQWYLKGFRNSNKVKNKINQLT 290 Query: 305 DASEQLEALEAYFEN 319 D E + L+ + Sbjct: 291 DLDEIYKILDEFKNE 305 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 172/324 (53%), Gaps = 3/324 (0%) Query: 1 MRIGQYQLR-NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG +L L+ APM ++D PFR LC GA + SE +SS + ++ KSR+++ Sbjct: 4 VKIGNIELPEFPLLLAPMEDVSDPPFRRLCKTHGADMMYSEFISSEGLIRDAIKSRMKLD 63 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D +QI G D + M +++I ++DIN GCP KKV + AG+ +L+ D Sbjct: 64 IFDYERPVGIQIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKDVD 123 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ + V+ D+PVT+K R GW N +E+A+ +D G+QALTIH RTRA ++ G Sbjct: 124 LMVRLTKAVIKGTDLPVTVKTRLGWDESSINIDEVAERLQDIGVQALTIHARTRAQMYKG 183 Query: 180 EAEYDSIRAVKQKVSI--PVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 +++ I VK I P+ NGDI P KA + G D +MIGRAA G PWIF EI Sbjct: 184 HSDWSHIARVKNNPRITMPIFGNGDIDSPEKALQYKNEYGIDGIMIGRAAIGYPWIFNEI 243 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 +HY TGE LP + + H++ ++ G G R+H + Y + +F+ Sbjct: 244 KHYFKTGEHLPAPTVIDRVEAARNHLKWSMEWKGERLGIVEMRRHYTNYFKGIHSFKEFK 303 Query: 298 RTFNAIEDASEQLEALEAYFENFA 321 + ++ ++ + +A Sbjct: 304 QKLVTTDEPENLFAIMKEIEQVYA 327 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 131/321 (40%), Positives = 185/321 (57%), Gaps = 4/321 (1%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLR---MVH 60 G + +I APM+G+TD PFR L EMG G+ VSEM++S V E+ + Sbjct: 35 GGVTIETPVILAPMSGVTDLPFRMLAREMGTGMVVSEMIASWAMVRENKTTLRMAEPAGP 94 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKV-NRKLAGSALLQYPD 119 +Q+AG DP+ MA+AARI ++ GA++IDIN GCP KKV + AGSAL++ Sbjct: 95 PSPGSPNALQLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDEV 154 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 IL V AV VPVTLK+R GW + N +A++AE GI+ +T+HGRTR + G Sbjct: 155 TAAKILEATVKAVSVPVTLKMRMGWDHQSLNAPALAKIAEASGIRMITVHGRTRQQFYEG 214 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +A++ + VKQ S+PVI NGDI +A +GAD +M+GR GRPW R++ Sbjct: 215 KADWAFVARVKQATSLPVIVNGDIQTVEQAAEARAISGADGVMVGRGCYGRPWFPRQVAA 274 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL G +P PL+E K++L H + +G G R+ARKHVSWY + FR T Sbjct: 275 YLRDGVHIPEPPLSERKQILLNHYDAMLRCFGTDAGMRLARKHVSWYTTGLHGSAAFRAT 334 Query: 300 FNAIEDASEQLEALEAYFENF 320 N + D S+ L ++ +F+ Sbjct: 335 VNRLADPSQVLALIDTFFDPL 355 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 167/310 (53%), Gaps = 2/310 (0%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 L APMAG+++ PFR LC+ GA + V+E +S+ E++ + ++ E VQ Sbjct: 15 PLYLAPMAGVSESPFRRLCHAHGADVVVTEFLSAEGIRRENEATISKLRFAPEERPIGVQ 74 Query: 71 IAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 I GS+P MADAA + + +DIN GCP KKV R+ GS L+ D+V+ I+ V Sbjct: 75 IFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDLDLVEEIIRAVS 134 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 A +PVT+K R+GW E R+ IA +D G + +H RTR +++G A +D I V Sbjct: 135 KATPLPVTVKTRSGWNEEMRDPVGIALRMQDAGAKVFALHARTRTQMYSGSANWDEIARV 194 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 + + IPV+ NGDI L A+ +LD+T AD +MIGR + G+PW+F++ + +D + Sbjct: 195 AEALDIPVLGNGDIKTALDAKRMLDHTKADGIMIGRGSYGQPWVFKQTRALIDGTPVPET 254 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYR-IARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 + E + H R + + A G RKH+ WY++ + + R + + D +E Sbjct: 255 PGVQERFAIALDHARMVQGYEVDAIGAALEFRKHLGWYVKGLPNSAELRAKLHQVRDFAE 314 Query: 309 QLEALEAYFE 318 Y E Sbjct: 315 VETIFTNYLE 324 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 176/319 (55%), Gaps = 6/319 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +++G+ + ++ APMAG+T++ FR LC E G GL V+EM+++ V +S + H Sbjct: 67 LKLGKLTVDTPVVLAPMAGVTNKAFRRLCSEYGGGLYVTEMVTARALVERKPESMRIIEH 126 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + IR++QI G D + A R+ VE A ID+N GCPA KV R+ G+AL D Sbjct: 127 DPDEKIRSIQIYGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTD 186 Query: 120 VVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 + +I+ V D+P+T+K+R G +H E A++A D G+ A+ +HGRT A Sbjct: 187 LFTAIVQTAVKEASRNDIPLTIKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQH 246 Query: 177 FNGEAEYDSIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 ++G+A++DSI +++ +P++ NGDI A +++ TG D ++IGR QGRPW+F Sbjct: 247 YSGKADWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGCQGRPWLFG 306 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHD-FYGPAKGYRIARKHVSWYLQEHAPND 294 ++Q+ + L EV ++ H L + F +G R RKHV+WY + + Sbjct: 307 DLQNAFEGSSERIRPTLTEVSDMIYRHAELLVETFGDETRGLREIRKHVAWYFKGYPVGG 366 Query: 295 QFRRTFNAIEDASEQLEAL 313 + R + D + E + Sbjct: 367 ELRAKMAQVPDLATFRELI 385 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 164/317 (51%), Gaps = 4/317 (1%) Query: 7 QLRNR-LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 QL+N+ ++ AP+AG++D FR + GA T +EM+S N +++ K+ + + Sbjct: 4 QLKNKQIMLAPLAGVSDVGFRLISERYGADKTFTEMVSVNALYYDNKKTNDLLFISENEK 63 Query: 66 IRTVQIAGSDPKEMADAAR--INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +Q+ GS P+ + + IN ++ I NMGCP K+ + GS L+ P +V+ Sbjct: 64 NCNIQLFGSKPEVIEKVIKDKINYIEKSKEISFNMGCPVAKITKNGEGSQLMANPKLVEE 123 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I + + D + +K R G +H N +I ++A+D GI + +H RT+ +++G A + Sbjct: 124 ICKTLRKSTDKKLNIKFRLGIDDKHINYLDIGKIAQDTGIDYVILHARTKDQMYSGNANW 183 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 D IR +K+ + IPVIANGDI V+D T AD +M+ R A G P++F+EI+ Y+ T Sbjct: 184 DHIRKLKENLQIPVIANGDIFSVEDFINVIDLTKADGVMLARGAMGNPFLFKEIKDYIKT 243 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAI 303 G+ E+ L + + RKH+SWY++ + + R N + Sbjct: 244 GKY-SKPSPIEIIDQLIDQYKLELKYKEEKLVVTQMRKHLSWYIKGLENSSKIRDLVNKL 302 Query: 304 EDASEQLEALEAYFENF 320 + E ++ LE Y Sbjct: 303 KTIDEVMDELENYKSTL 319 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 159/312 (50%), Gaps = 2/312 (0%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 N + APMAGITD FRT ++ A + V+E++S++ ++SD++ M + + Sbjct: 10 NPFVLAPMAGITDHAFRTFIKKLDASVVVTELVSASGIEYKSDRTLKLMSFDESQRPIGI 69 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G +P+ +A AA++ G +D+N GCP KV +K AGSA+L+ P V+ +++ V Sbjct: 70 QLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVSTVK 129 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 A+ +P+T+KIRTGW RN EI +A + G+ + IHGRTRA + G A++D I V Sbjct: 130 AAIKIPLTIKIRTGWDANSRNATEICNIAYNEGVSWVAIHGRTRAQSYTGLADWDFIADV 189 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 K IP++ NGDI P +A L +G D +MIGR P+IF + + Sbjct: 190 KANTKIPILGNGDILTPRQANLRLQQSGCDGVMIGRGCLKNPFIFMDALSLWRGEPI--K 247 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 + L +E+ RK +W+ ++ QFR+ + E Sbjct: 248 DVKRDYVSLFQGLQKEIVAHCDEHITGIQLRKFAAWFSTGYSGAAQFRKNLFQSKSNDEI 307 Query: 310 LEALEAYFENFA 321 + +F + Sbjct: 308 MALANEFFASIG 319 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 178/319 (55%), Gaps = 2/319 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 MR+G Y+L + L +P+AG T+ PFR E+G G ++++++ + + + + Sbjct: 1 MRLGPYELSSNLFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLLERNPAALKLVA 60 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 E ++Q+ GS P EM DAARI + GAQ +DINMGCP +KV R GSA++ + Sbjct: 61 SSAEDRPMSIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTELN 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +++ ++ AV +PVT K+R GW E+ ++A++ ED G+ A+ +HGRTRA F+G Sbjct: 121 QTAALVRGMIEAVKIPVTAKMRLGWDDENLTAPDLARVLEDAGVAAVFVHGRTRAQGFSG 180 Query: 180 EAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 I AV Q V IPVI NGD+T P ARA+++ TG + IGR A PWIFR Sbjct: 181 TVNLAGIAAVVQAVKRIPVIGNGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWIFRRTH 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 H L +GEL P E R++ H +FYG KG R+ RK WY + P F+R Sbjct: 241 HLLTSGELWPEPGFDERVRVMRRHFERYCEFYGEEKGPRLFRKVAPWYAKRFGPAKPFKR 300 Query: 299 TFNAIEDASEQLEALEAYF 317 I+ ++ AL Y Sbjct: 301 RIITIDSRADFDAALAEYI 319 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 3/319 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 IG ++ +R + APMAG+T+ FRT+ E AGL V EM+S ++ ++K+ + Sbjct: 33 FMIGNVEIPHRTVLAPMAGVTNSAFRTIAKEFSAGLVVMEMISEKGLLYNNEKTLHMLHI 92 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + ++Q+ G D + + AA + A I+DINMGCP KV + AG+ L+ PD Sbjct: 93 DENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPD 152 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I+ EV + +D+P+T+K+RTGW+ E A AE G+ AL +HGRTR ++ G Sbjct: 153 KIYHIVKEVTSVLDIPLTVKMRTGWSDSDL-AVENALAAESAGVSALAMHGRTREQMYTG 211 Query: 180 EAEYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +++++ V + IP I NGD+ + A+ +++ G DA+M+GRAA P+IF +I Sbjct: 212 HCDHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAMNNPYIFTQIN 271 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 H+ +TGE LP LP + + H++ L D G R R YL+ A + R Sbjct: 272 HFFETGEELPDLPFDKKLDIAEDHLKRLVDLKGEMIAVREFRGLAPHYLRGTAGAAKVRG 331 Query: 299 TFNAIEDASEQLEALEAYF 317 + E ++ E Sbjct: 332 EVSRAESVAQVKEIFATLR 350 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 152/322 (47%), Positives = 214/322 (66%), Gaps = 2/322 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M IG+Y L ++++ APMAG +D+PFR +C E GA LT SEM+ + ++KS+ R+ Sbjct: 1 MNIGKYLLSSKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQKHLLNTNKSKHRLDF 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 E ++QIAGS+ +E+A++A+ +E GA IIDINMGCPAKKV K AGSAL++ + Sbjct: 61 RSEQSPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKL 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ I+ VVNAV++PVTLK+RTGW E++N IA++AED GI+ L IHGRTRA +NG+ Sbjct: 121 VEDIIKAVVNAVNIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTRAQKYNGD 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEYD+++ +K VSIPV+ANGDIT KA+ VLDYTGADA+M+GRA QG PW+ +I +Y Sbjct: 181 AEYDTVKKIKGIVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNPWLVGQINNY 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEH--APNDQFRR 298 L TG+ L + L+ H+ ++HDFYG G +++RKH+ WY F Sbjct: 241 LKTGKSPKAPLLDKKISLILRHILQIHDFYGHKMGTQLSRKHIFWYSMHLDQEKGSAFWP 300 Query: 299 TFNAIEDASEQLEALEAYFENF 320 N + D SEQ + + Sbjct: 301 NINRVTDHSEQYLKFHDFLYSI 322 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 173/319 (54%), Gaps = 3/319 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 RIG ++ +R + APMAG+T+ FRT+ E GAGL V EM+S ++ ++K+ + Sbjct: 37 FRIGDVEIPHRTVLAPMAGVTNSAFRTIAKEFGAGLVVMEMISEKGLLYNNEKTLHMLHI 96 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + ++Q+ G D + + AA + A I+DINMGCP KV + AG+ L+ PD Sbjct: 97 DENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPD 156 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + I+ EV + +D+P+T+K+RTGWA E A AE G+ AL +HGRTR ++ G Sbjct: 157 KIYHIVKEVTSVLDIPLTVKMRTGWADSSL-AVENALAAESAGVSALAMHGRTREQMYTG 215 Query: 180 EAEYDSIRAV-KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +++++ V K IP I NGD+ A+ +++ G DA+MIGRAA P++F +I Sbjct: 216 TCDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMNNPYLFTQIN 275 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 H+ +TG+ LP LP A+ + H++ L + G R R YL+ A + R Sbjct: 276 HFFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAVREFRGLAPHYLRGTAGAAKVRG 335 Query: 299 TFNAIEDASEQLEALEAYF 317 + E +E E Sbjct: 336 AVSRAETLAEVEAIFETVR 354 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 175/321 (54%), Gaps = 2/321 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG ++R R + AP+AGIT+ PFR + G L SEM+S+ + S+K+ + Sbjct: 1 MKIGDLEIRGRTVLAPLAGITNLPFRIIAKGCGCTLVCSEMVSAKGLEFNSEKTVQLLRT 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPD 119 +VQI G++ MA+AAR E IIDIN GC KKV R AG AL++ D Sbjct: 61 DACERPVSVQIFGAEALSMANAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKDMD 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++I+ V AV +P T+KIR+GW +IA++AED G+ A+ IH RT A F G Sbjct: 121 NARAIIRAVRRAVSMPFTIKIRSGWDSSASQAFDIARMAEDNGVDAIAIHPRTAAQGFRG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ I +K+ ++IPVI NGDIT P + A++ TG D +M+GRAA G P+IF I+ Sbjct: 181 RADWSMIARLKEMLTIPVIGNGDITTPEQGVAMIQETGCDGVMVGRAAMGNPFIFGGIEA 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 L GE E+ +++ V + G R+ R ++W+++ A FRR Sbjct: 241 LLR-GEAWNEPSPMEIFQIMEEMVESHVAYLGERPACRMMRSRLAWFVKGFAGASVFRRE 299 Query: 300 FNAIEDASEQLEALEAYFENF 320 IE + + + Y +F Sbjct: 300 LTGIETLDQAMALIRRYEADF 320 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 106/322 (32%), Positives = 167/322 (51%), Gaps = 4/322 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVW-ESDKSRLRM 58 +IG ++R + APMAG+TD FR +G GL ++E S++ K+R + Sbjct: 23 FQIGSVEIRPATVLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARRYL 82 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 + Q+ GSD + +ADAA++ + G ++D+N+GCP+K+V + GS LL+ Sbjct: 83 TFYGNERPISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDL 142 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +K I V AV +P T+K R GW + E+A+LAE+CG+ A+ +H RTR ++ Sbjct: 143 PQIKVIFESVRKAVTIPFTVKFRAGWNEKELVFLELAKLAENCGLNAVAMHARTREQGYS 202 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G+A + I +KQ V IPVI NGDI P A A++ TG DA+MIGR+A PWIFR+I+ Sbjct: 203 GQANWGWIADLKQVVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSAASNPWIFRQIE 262 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 Y TG + ++ + R L + ++ SW+ R+ Sbjct: 263 QYTATGRY-DLPTNEDRYEMIRMYFRMLIENDTQG-AEGKMKQFASWFTHGVPGGGVLRK 320 Query: 299 TFNAIEDASEQLEALEAYFENF 320 + L A++ +FE Sbjct: 321 AVYEAKKRETILVAVDQFFEAL 342 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 106/347 (30%), Positives = 169/347 (48%), Gaps = 29/347 (8%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCY----------------------EMGAGLTV 38 M IG + + APMAG+TD FR + G GL + Sbjct: 23 MDIGGVVVAPATVLAPMAGVTDTVFRRFIRNASLFAEGGAGAANVDREVTNQQSGCGLIM 82 Query: 39 SEMMSSNPQ-VWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDIN 97 +E S++ K + + ++ Q+ GS+P+ +A+ ARI ++G ++D+N Sbjct: 83 TEFTSADGLSKMRESKRKRYLTFYEDEHPIAAQLFGSNPETLAEGARIVEDTGFDMVDLN 142 Query: 98 MGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQL 157 +GCPAK+V GS LL+ ++ I V AV +P T+K R GW +H C +A+L Sbjct: 143 LGCPAKRVVACNGGSGLLRDLPLIAKIFEAVRGAVKIPFTVKFRLGWNDQHIICVPLARL 202 Query: 158 AEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTG 217 AE+ G+ A+++H RTR ++G+A ++ I VK V IPVI NGD+ P A A++ TG Sbjct: 203 AEESGLNAVSLHARTREQGYSGQARWEHIAEVKDAVRIPVIGNGDVRTPEDACALVAKTG 262 Query: 218 ADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYR 277 D +MIGRAA PWIFR+I Y TG A+ +++ + L D + Sbjct: 263 CDGVMIGRAAPANPWIFRQIAQYTATGRYDE-PSEADRYQMIRTYFEMLLDEGREDEHAS 321 Query: 278 I-----ARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFEN 319 ++ SW+ R++ + + L+A+E +FE Sbjct: 322 RAAEGKMKQFASWFTHGVPGGAGLRKSIYEAKTGPKILDAVERFFET 368 >UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepID=C0W327_9ACTO Length = 438 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 169/358 (47%), Gaps = 38/358 (10%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEM--------------------------GA 34 +RIG + + APMAG+T+ FR LC E A Sbjct: 27 LRIGPITVGVPVELAPMAGVTNASFRRLCREQGESALPAHARPAAAGPLPTDDGGLLAPA 86 Query: 35 GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQI 93 GL V+EM+++ V +DK+ + +R++Q+ G DP AARI VE A Sbjct: 87 GLYVTEMVTTRALVERNDKTLAMVRTDPTERVRSIQLYGVDPVIAGKAARILVEEDLADH 146 Query: 94 IDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV-----------VNAVDVPVTLKIRT 142 ID+N GCP KV RK G+AL D++ +IL EV +VPVT+K+R Sbjct: 147 IDLNFGCPVPKVTRKGGGAALPWKKDLLHAILREVVRGAEEGVRLGRREREVPVTVKMRI 206 Query: 143 GWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 G EH + A+ A+D G+ AL +HGRT + G+A++ +I +K+ IPV+ NGD Sbjct: 207 GVDEEHETYLDAARAAQDAGVAALALHGRTARQHYAGKADWSAIARLKEACRIPVLGNGD 266 Query: 203 ITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAH 262 A ++ TG D +++GR QGRPW+F +I H L L V + AH Sbjct: 267 TWTGSHALEMMRQTGCDGVVVGRGCQGRPWLFADIVHALSGSVERTHPDLDAVIATIRAH 326 Query: 263 VRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 R L G +G R RKH+ WYL+ + Q R + +E LEA Sbjct: 327 ARLLAAELGEDRGVRDLRKHIGWYLKGYPVGGQARGDLMKVSSLAELDAGLEAMRARL 384 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 136/310 (43%), Positives = 186/310 (60%), Gaps = 10/310 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 IG +RNR+I APM+G+TD PFR L GAGL V+EM++S V ++ +S R+ Sbjct: 18 FSIGPVPIRNRVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQDTAESWARLKS 77 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQ+AG + MA+AA+I ++GA IIDINMGCPAKKV +GSAL++ PD Sbjct: 78 AGL-KPHMVQLAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDH 136 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ V AVDVPVTLK+R GW N IA+ AE+ GIQ +TIHGRTR + G Sbjct: 137 ALGLIEATVKAVDVPVTLKMRLGWDENSINAPHIARRAEEAGIQLVTIHGRTRMQFYEGR 196 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+IRAV+ +SIP++ANGD+ P A +L +GADA+M+GR QGRPW + + Sbjct: 197 ADWDAIRAVRDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWHAGVLAGH 256 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP--NDQFRR 298 + E+ + H R + DFYG A G R ARKH+ WYL +AP N + Sbjct: 257 RE-------PDRGEIADIALEHYRMMLDFYGEAVGIRHARKHLGWYLDRYAPTINGAEKA 309 Query: 299 TFNAIEDASE 308 +D+ E Sbjct: 310 RIMTSKDSQE 319 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 138/313 (44%), Positives = 185/313 (59%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +R+ + L ++ APMAGITDRPFR L GAG+ VSEM++S V R R Sbjct: 40 LRLAEKHLTPPVLLAPMAGITDRPFRDLVMRFGAGMVVSEMVASQEMVQAKPGVRERAEL 99 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+AG + MA+AAR + GA++IDINMGCPAKKV +GSALL+ PD Sbjct: 100 SADVENTAVQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDH 159 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +++ VV AVD+PVTLK R GW N ++A+ A+D GIQ +TIHGRTR + G Sbjct: 160 ALTLIEAVVAAVDIPVTLKTRLGWDDSLLNAPDVARRAQDAGIQMVTIHGRTRCQFYKGR 219 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++ +I AVK+ VS+PVIANGDIT P AR LD +GAD +M+GR AQGRPW+ +I H Sbjct: 220 ADWQAIGAVKEAVSVPVIANGDITGPGAARTALDQSGADGVMVGRGAQGRPWLLAQICHD 279 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L + + ++ H + + FYG G R+ARKH+ WY+ + RR Sbjct: 280 LYGIAPPDIPTGSALIDMVRGHYQAMLAFYGTDLGLRVARKHLGWYMDDAGTPATLRRAV 339 Query: 301 NAIEDASEQLEAL 313 D E L L Sbjct: 340 LTSRDTGEVLHLL 352 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 95/312 (30%), Positives = 166/312 (53%), Gaps = 5/312 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ AP+AG+TD +R + E L +EM+SS+ +DK+ +++ + VQ Sbjct: 3 KIFIAPIAGVTDYTYRGILEEFQPDLLFTEMVSSDALAALNDKTISQILRLRSG--NGVQ 60 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + G D ++M +A+ + G + IDIN GCP K+V GSALL+ P+ +K IL + Sbjct: 61 LFGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKIKEILFTLRE 120 Query: 131 AV--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 + +++KIR G+ N +IA++AE+ G +T+HGRTRA L+ G A++ I+ Sbjct: 121 QLEESTKLSIKIRVGYDR-PENYLQIAKIAEEAGCSHITVHGRTRAQLYTGLADWSLIKE 179 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 +K+ V+IPVI NGDI A+ ++ +G D +M+ R G PW+ R+I+ L GE+ Sbjct: 180 IKEHVTIPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWLIRDIREMLQYGEVKT 239 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 + + + H+ + + + RKH+ WYL+ + +++ N D Sbjct: 240 KVSTEDKIDMAIHHILKTEEDNPQREFVFDVRKHICWYLKGIPHSAEYKNRINQSTDYKA 299 Query: 309 QLEALEAYFENF 320 ++ L+ E Sbjct: 300 VVQLLQELKEKI 311 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 136/317 (42%), Positives = 196/317 (61%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 R+G Y + N L+ APMAGITD PFR +C G GL V+EM++S +++ Sbjct: 9 FRLGTYMIDNPLVLAPMAGITDLPFRRICKRFGVGLMVTEMIASRAVDMGRERTERMAEL 68 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 D+ ++QIAGSDP+ + +AAR V GA +DINMGCP KK+ +++AGSA+L+ + Sbjct: 69 GDDEHPVSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDEAL 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V +L VV AVDVPVTLKIRTGW + +N + IA++AED GIQ LT+HGRTRA +F+G Sbjct: 129 VARVLAAVVAAVDVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRAQMFHGH 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A ++ I K VSIPVI NGDI D AR ++ + D +M+GRA QG PW+ E+ Sbjct: 189 ACWEDIGLAKAAVSIPVIGNGDIVDAESAREMIRVSNCDGVMVGRAVQGNPWVLGEVHAA 248 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 + + P AE ++ H+R L + +G ++ARKHV WY + + +FR++F Sbjct: 249 IAGLPIPPKPTAAERWLIVDEHMRHLVEHHGIRTASKLARKHVIWYSKGLHGSAEFRQSF 308 Query: 301 NAIEDASEQLEALEAYF 317 + D + ++ AYF Sbjct: 309 QVMTDWQQMMDFAAAYF 325 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 107/327 (32%), Positives = 160/327 (48%), Gaps = 8/327 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 IG +L + + AP+AG TD RT+ E GAGL SEM+S+ ++E + + Sbjct: 8 IGDIELPSPFLMAPLAGFTDNAVRTIALEFGAGLVYSEMVSAKGLIYEQKNTEELLDFRG 67 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 G +QI GSDP +A + G I+DINMGCP +K+ + +G+AL++ PD++ Sbjct: 68 ADGFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDIIY 127 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 ++ + V PVT KIR GW + N + A+ E G A+ +HGRT + G Sbjct: 128 DMVKDAVKITQKPVTAKIRIGWDNNNINAVDCAKAIESAGASAVAVHGRTAKQKYEGSVN 187 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF-------R 235 D I +VKQ VSIPVI NGDI +A +D TG D +MIGR A G+PWIF Sbjct: 188 RDVIASVKQSVSIPVIGNGDIKSAKEALEFMDETGCDMVMIGRGAIGKPWIFKSCNMALS 247 Query: 236 EIQHYLDTGELLP-PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPND 294 EI+ E+ E+ L + + G + RK +S YL+ + Sbjct: 248 EIRKGKSIDEITEYEPCADEILNTLKKLIDLTVSYKGEKRALLELRKKLSKYLKNTSGVK 307 Query: 295 QFRRTFNAIEDASEQLEALEAYFENFA 321 +R+ E + + Y + + Sbjct: 308 DYRKRLYEAGTKIELMGIIYEYCDKLS 334 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 104/319 (32%), Positives = 164/319 (51%), Gaps = 2/319 (0%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTL-CYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 + ++ ++ APMAG+TD FR + G GL +EM ++ ++ + + ++ Sbjct: 19 VAYIKIEPNIVLAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYL 78 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 E T+QI+G+DP +A+AAR+ + GA IIDIN GCP+ KV GSALL+ + Sbjct: 79 PEERPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKM 138 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + +L V AV +PVTLK+R GW N E Q AE G+ ALT+H RTR + G+A Sbjct: 139 ERLLRAVRAAVQIPVTLKLRAGWDEASLNFIEAGQRAEAAGVAALTLHPRTREQGYKGQA 198 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ + A+K+ VSIPVI +GD+ A L +GAD +MIGR A PWIFR++ Sbjct: 199 DWSRVAALKRAVSIPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIANPWIFRQVADLR 258 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 P P A+ LL ++ + ++ + + ++ R + Sbjct: 259 QGRTPFEPTP-ADKYHLLLEYMAIYAEELPERLALNKIKQLIGQFYIGLPGSNHLRVAVH 317 Query: 302 AIEDASEQLEALEAYFENF 320 + EA+E +F + Sbjct: 318 TSTSLAAAQEAIERFFAPY 336 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 168/321 (52%), Positives = 218/321 (67%), Gaps = 6/321 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG ++L N + APMAG+TD P R LC E+GAG+ V+EM++S+P++ S KS LR H Sbjct: 15 LKIGGFKLANPVALAPMAGVTDLPMRELCVELGAGMAVAEMLTSDPKLLASRKSSLRRRH 74 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + G+R+VQI GS+P+++A+AAR+N + GA +IDINMGCPAKKV +K AGSALL D Sbjct: 75 SAKGGLRSVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDR 134 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV+AVDVPVTLKIRTG +P+ RN IA++AED GIQ LT+HGRTRA F GE Sbjct: 135 VAEILKAVVSAVDVPVTLKIRTGVSPQQRNGVAIAKIAEDAGIQLLTVHGRTRADRFKGE 194 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 AEY +I + VSIPV+ANGDIT P +A AVL TGA +MIGRAA GRPW+ I Sbjct: 195 AEYHTIERIVDAVSIPVLANGDITTPAQALAVLQKTGAAGIMIGRAALGRPWLPGAIAQS 254 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN-----DQ 295 L G P LAE + H+ LHDF+G G RIARKHV W++ + + Sbjct: 255 LA-GLRTPLPSLAERFLQMRCHLTALHDFHGDFMGVRIARKHVGWFIDAIENDVASSFTE 313 Query: 296 FRRTFNAIEDASEQLEALEAY 316 ++R FNA++DA Q L+ Sbjct: 314 WKRHFNALQDADAQQTLLQTL 334 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 153/308 (49%), Gaps = 5/308 (1%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAG+ D FR LC E G LT +EM+SS + ++K+R + + +Q+ G +P Sbjct: 1 MAGVNDIVFRRLCLEQGCDLTYTEMISSKALSFANEKTRHLLDLAEGERRVAIQLFGHEP 60 Query: 77 KEMADAARINVESGAQI---IDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD 133 K MA A + IDINMGCPA K+ +K GSAL++ D+ SI+ +V AV Sbjct: 61 KVMAREAAWVEDELGDALALIDINMGCPAHKIVKKGDGSALMRDQDLAASIVRDVARAVS 120 Query: 134 VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 PVT+K R G+ E + ED G A+T+HGRT A ++ G +E++ + VK + Sbjct: 121 CPVTVKFRRGFGAEEETAVDFGLRMEDAGAAAVTVHGRTAAQMYRGPSEWECVARVKAAL 180 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLA 253 S+PVI NGDI A ++ TG D +MI R AQG PWIF +++ LD P Sbjct: 181 SVPVIGNGDIVSGASAADMVRATGCDGVMIARGAQGNPWIFADVRRVLDGMPPAPDPTRQ 240 Query: 254 EVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEAL 313 + + H+ L G RKHV WYL + R NA + L Sbjct: 241 DRVEMARRHIHLLSSRLGNT--VVYMRKHVMWYLHGVPGASRARAALNACVTVDDFDRVL 298 Query: 314 EAYFENFA 321 + + A Sbjct: 299 DELLADAA 306 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 176/312 (56%), Gaps = 5/312 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ AP+AG+TD +R + E L +EM+S N +K+ ++ + E +VQ Sbjct: 3 KIYTAPIAGVTDYTYRGILKEFKPDLLFTEMVSINALEVACEKTLKVILRLREGD--SVQ 60 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + G D K+M ++A+ G + IDIN GCP KK+ G+AL++ P++VK++L+EV + Sbjct: 61 LFGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVKAMLSEVRS 120 Query: 131 AVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 A++ +++KIR G+ +N EIA++A++ G + +TIHGRTR ++ G+A++ I+ Sbjct: 121 ALNDKTDLSIKIRVGYKES-KNPVEIAKIAQETGCKHITIHGRTREQMYTGKADWSIIKE 179 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 VK+ V IPVI NGDI A+ +DY+G D +M+ R G PW+ R+I+ Y + G++L Sbjct: 180 VKESVDIPVIGNGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLIRDIREYFEYGKILH 239 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P+ E + H + + RKH+ WYL+ + + N ++ +E Sbjct: 240 PVTDIEKIDMAIKHTKRTEVEHPERPFIFELRKHLCWYLKGIRNTAEIKDKINHTDNYNE 299 Query: 309 QLEALEAYFENF 320 +E L +N Sbjct: 300 IVELLNRVKDNL 311 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 105/321 (32%), Positives = 167/321 (52%), Gaps = 7/321 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMV 59 + +G + +I +PMAG+T+ PFR LC + G L V+EM+++ V + K+ Sbjct: 46 VDLGNVHVGTPVILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKALRLCR 105 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYP 118 IR++Q+ G +P M AA+I V+ A +D+N GCP KV R+ GSAL Sbjct: 106 FAPSERIRSLQLYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKT 165 Query: 119 DVVKSILTEVVNAVD---VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 D+ +++ VV D +PVT KIR G EH E +A++ G +A+T+H RT A Sbjct: 166 DLFTDVVSRVVRVCDAAGIPVTAKIRVGIDHEHETFHEAGHIAQEEGCKAVTLHARTTAE 225 Query: 176 LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 + G +++ I + +++ +PV NGDI A A+++ TG + IGR QGRPW+F Sbjct: 226 YYGGHSDWSRIGELVEQLDVPVFGNGDIWGAADALAMVEQTGCAGVAIGRGCQGRPWLFA 285 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY--GPAKGYRIARKHVSWYLQEHAPN 293 +I+H + L +V +++ H L +FY RKHV+WYL+ Sbjct: 286 DIKHAFAGSDERTDPTLGQVCQVIMRHATYLTEFYDGDERMAAHDMRKHVAWYLKGFPVG 345 Query: 294 DQFRRTFNAIEDASEQLEALE 314 RR F A E ++ ++ Sbjct: 346 GGVRRAFMACESLADMQRIVD 366 >UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinobacteridae RepID=D2RA64_GARVA Length = 384 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 101/321 (31%), Positives = 162/321 (50%), Gaps = 7/321 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMV 59 + +G+ + ++ +PMAGIT+ PFR +C E G L V+EM+++ V + K+ Sbjct: 8 VDLGKVHIATPVVLSPMAGITNWPFRVICREFGPDGLYVAEMITARALVARNPKALRLCR 67 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYP 118 +R++Q+ G +P + A RI V+ A +D+N GCP KV R+ GSAL Sbjct: 68 FAPSEKVRSLQLYGVNPSIVEQATRIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKT 127 Query: 119 DVVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 D+++ IL VV+ +PVT K R G H + +A++ G A+T+H RT A Sbjct: 128 DLLQEILHRVVSVCEPAGIPVTAKFRVGIDENHETFIQAGHIAQEEGCAAVTLHARTTAE 187 Query: 176 LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 + G +++ I + + + IPV NGDI A A+ TG + IGR QGRPW+F Sbjct: 188 YYGGHSDWQRIGELVETLDIPVFGNGDIWGAEDALAMFKETGCAGVAIGRGCQGRPWLFA 247 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY--GPAKGYRIARKHVSWYLQEHAPN 293 +I++ + + LAEV ++ H+ L +FY RKH++WYL+ Sbjct: 248 DIRNACEGSDNRVNPTLAEVGSVILRHLNLLVEFYDGDERMAVHDLRKHIAWYLKGFPVG 307 Query: 294 DQFRRTFNAIEDASEQLEALE 314 R+ F E + L+ Sbjct: 308 GGTRKAFMECESIEDVQRNLD 328 >UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostridiales RepID=Q14SX5_RUMFL Length = 332 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 165/309 (53%), Gaps = 4/309 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG + APMAG+ DR +R +C GA VSEM+S+ + K+ Sbjct: 5 IKIGNVTIPRTAALAPMAGVADRAYRLMCKRYGAAYVVSEMVSAKGICYSDRKTAELCTV 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP-D 119 +E VQ+ GS+P MA+A +I ++ IIDINMGCP KV AGSAL++ P Sbjct: 65 TEEERPMAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPAL 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 V A D PVT+KIR+GW+ + N E+A+ E G A+ +HGRTR ++G Sbjct: 125 AAAITEAAVKAAGDTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 +++ + I+AVK+ VS+PVI NGDITD + TG D +MIGR + G P+IFREI Sbjct: 185 QSDMNVIKAVKEAVSVPVIGNGDITDAESCAEMYGRTGCDLVMIGRGSYGNPFIFREIAA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVREL--HDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 ++ E P L E R++ H+R + ARKH +WY+ + + +FR Sbjct: 245 RMEGSEYQP-PSLEEKMRVMLEHIRLIAGLSEKCEELAMHEARKHAAWYMNGYYGSAKFR 303 Query: 298 RTFNAIEDA 306 + Sbjct: 304 GRCYQLSSY 312 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 130/323 (40%), Positives = 187/323 (57%), Gaps = 13/323 (4%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 I +RNR++ APM+G+TD PFR L + GAGL V+EM++S V+ + +S R+ Sbjct: 10 FSIASVAIRNRVVLAPMSGVTDLPFRQLAFRHGAGLVVTEMVASRELVFNAAESWSRLKG 69 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQ+AG DP MA+AA+I +GA IIDINMGCPAKKV AGSAL++ P++ Sbjct: 70 AGLT-PHMVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEI 128 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +++ V AV +PVT+K+R GW + N ++++ A+D G+QA+T+HGRTR + G Sbjct: 129 ALAMIEATVKAVSIPVTVKMRLGWDSDSINAPDLSRRAQDAGVQAITVHGRTRMQFYEGR 188 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+I AV+ + IP+IANGDI A+ +L +GADA+M+GRA QGRPW + + Sbjct: 189 ADWDAIAAVRDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPWHAGVLAGH 248 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL--QEHAPNDQFRR 298 P E+ + AH R + D YG G R ARKHV WYL + + Sbjct: 249 -------APPSAEEIPAIAVAHYRAMLDHYGAHVGVRHARKHVGWYLERHGVQLDPAEKT 301 Query: 299 TFNAIEDASEQLEALEAYFENFA 321 +D + L F A Sbjct: 302 GLMTSKDPDHVADRL---FAALA 321 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 317 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 142/291 (48%), Positives = 191/291 (65%), Gaps = 1/291 (0%) Query: 1 MRIGQYQLR-NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 M++G + L + APMAG++DRP R + +GA VSEM++S+ ++W SDKSR R+ Sbjct: 1 MQLGPHHLPDPPVFLAPMAGVSDRPLRLIARRLGASAAVSEMVTSDTRLWGSDKSRHRLD 60 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 H EP R VQ+ G++P+ +A+AAR NV GA +ID+N+GCPAKKV K AGSALL P+ Sbjct: 61 HRQEPRPRIVQLLGNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 V+ +LT +V +V+VPVTLK+R G E N E IA +A+DCGI LT+HGRTRA + G Sbjct: 121 RVRELLTALVESVEVPVTLKMRLGLDRERVNAETIAGIAQDCGIAMLTVHGRTRADAYRG 180 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A+Y++I V + VSIPV+ANGD+ D AR L +GA LMIGR AQGRPW+ +I+ Sbjct: 181 TADYEAIARVVRAVSIPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPGQIRA 240 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEH 290 L + L+ H+R LH YG +G RIARKH+ WYLQ Sbjct: 241 SLAGEPVPADPAWDARLALIEEHLRALHAQYGEMQGVRIARKHLGWYLQHM 291 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 102/321 (31%), Positives = 167/321 (52%), Gaps = 8/321 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 I + LI APMAG +D P+R +C G ++ +E++S + VW + K+ + Sbjct: 24 FYIRNIPVYGELILAPMAGFSDMPYRLICRRFGMSMSYTEVVSVSGIVWNNKKTFKLLDF 83 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +E T Q+ G+D ++ +A + + G IIDINMGC + K AG+ +L++P Sbjct: 84 KEEERPVTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSK 143 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + + + ++ VPVT KIR GW + RN E+A++ E+ G + +HGRTR+ F+G Sbjct: 144 ISKMFNNLTGSLSVPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQYFSGA 203 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+I VKQ V IPVIANGD+ + T D +MIGRAA G PWIFR Sbjct: 204 ADWDAIAEVKQSVKIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGHPWIFR----- 258 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 + + +E ++ H+ + ++YG A G + RKH Y+ + R Sbjct: 259 ---YKDRENISGSEKIEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYIVGLPKATELRPYI 315 Query: 301 NAIEDASEQLEALEAYFENFA 321 + A + + + A+ ++ Sbjct: 316 VRSKSAEDIISYIAAHLNRYS 336 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 114/321 (35%), Positives = 170/321 (52%), Gaps = 4/321 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG + ++ APMA +TD PFRT+C G GLT++E + + + ++ Sbjct: 7 MRIGSLTIDTPVLLAPMAAVTDLPFRTICERFGVGLTITEFLKATALCDGDAEVVDKLTA 66 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQI G + + + AA++ ++ GA +IDINMGCPAK+V G+AL+Q+P++ Sbjct: 67 SLDGVRFGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAALMQWPEL 126 Query: 121 VKSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 ++ VV +V VPVT+K R GW P +RN E A + G Q +T+HGRTR F Sbjct: 127 SAELVRAVVASVPDSVPVTVKHRAGWNPLNRNAPEFACAMVEAGAQMVTVHGRTRTQGFA 186 Query: 179 GEAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 G + + IR V++ V +PV+ NGD+ + ++TG DA+MIGR A G PW+FR Sbjct: 187 GSVDLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALGNPWLFRS 246 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 + +AE R+ C HV L+ G K RK +WY + D F Sbjct: 247 LHALAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIHEVRKACAWYAKGLDGADGF 306 Query: 297 RRTFNAIEDASEQLEALEAYF 317 R+ + E L A A+F Sbjct: 307 RQHVWKLRSPDEVLVAAAAFF 327 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 5/321 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++IG+ +L L+ APMA +T+ FR LC GA LT +EM++ + + ES KS ++ + Sbjct: 6 LKIGRTELSGNLLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLS 65 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +E VQ+ G P ++ AA E +IID+NMGCPA+ + GSALL P+ Sbjct: 66 SEEDRPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPE 125 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +V SI+ E+ ++D PV+ KIR EIA+L E G A+T+HGRT A +++G Sbjct: 126 LVYSIILELTESLDTPVSAKIRLLGRE--EKTLEIARLIEKAGASAVTVHGRTAAQMYSG 183 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + + IRAVK ++SIPVIANGD+ D A L+ TG D LMIGRAA G P+IF++I+H Sbjct: 184 NSNLEGIRAVKNELSIPVIANGDVKDEESAERTLELTGCDGLMIGRAAMGNPFIFKKIRH 243 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YL+TGE L +++ L + R H W+ + + R Sbjct: 244 YLETGEKLGADKPFRQLEDFNSYISLLEEH--NLLSSINLRMHAHWFTKGLRGSRHVREK 301 Query: 300 FNAIEDASEQLEALEAYFENF 320 N +ED E + ++ + Sbjct: 302 INGLEDGKAITELIRSFCQEI 322 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 316 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 162/315 (51%), Gaps = 2/315 (0%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHID 62 G QL +R + +P+AG T+ PFR + E+G GL ++++++ + S+K+ Sbjct: 22 GALQLESRYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCP 81 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 E VQI GS+P++M DAA++ G IDINMGCP ++ + AG++++ P Sbjct: 82 EDSPFAVQIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTV 141 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 S++ VV AV +PV++K+R GW + ++ E G+ A+ IHGRTR F G Sbjct: 142 SLVQTVVEAVKIPVSVKMRLGWDDSELSAPFFSREFEKVGVVAVAIHGRTREQGFRGVVN 201 Query: 183 YDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 +D IR V + V IPVI NGD+T+ +A +L TG + IGR A PWIFR++ + Sbjct: 202 HDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPWIFRQLVQWE 261 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 TG PP + LL R L + + + RK WYL+ R F Sbjct: 262 QTGTYDPPGNFDDRLELLLRQFRYLLEMTTEKRAISMFRKMGHWYLKSMRVKPAMRHEFQ 321 Query: 302 AIEDASEQLEALEAY 316 + E +A+ Sbjct: 322 LASNLDEFGQAVRKI 336 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 315 bits (809), Expect = 9e-85, Method: Composition-based stats. Identities = 116/312 (37%), Positives = 158/312 (50%), Gaps = 5/312 (1%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 RL+ APMAG++D FRTLC E GA LT +EM+S+ + ++K+R + Sbjct: 10 SRRLLLAPMAGVSDEAFRTLCREQGADLTYTEMVSAKGLSYANEKTRHLLRLAPGEDQVA 69 Query: 69 VQIAGSDPKEMA-DAARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ G +P MA AA I E G +DINMGCPA+K+ K GSAL++ P + SI+ Sbjct: 70 VQLFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPALAASIV 129 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 V AV PVT+K R GWA E A+ ED G A+ +HGR L+ G AE+ + Sbjct: 130 RAVRAAVSRPVTVKFRRGWAEGDETAPEFARRMEDAGACAIAVHGRYAEQLYRGRAEWGA 189 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I VK+ VS+PV+ NGD+ A A+ + TG DA+MI RAA+G PW+F + + L Sbjct: 190 IARVKEAVSVPVVGNGDVRSGADAVAITERTGCDAVMIARAAEGNPWLFAQAKAALAGEP 249 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 + E L H R L G + RKH WYL R N Sbjct: 250 EPDGPTVEERIALARRHARLLSAREG--RNIVRMRKHAMWYLAGLPGAAAARGRINGCVS 307 Query: 306 ASEQLEALEAYF 317 + E + Sbjct: 308 VEDFDEVFDELL 319 >UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacterium RepID=B8DSX5_BIFA0 Length = 417 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 109/323 (33%), Positives = 164/323 (50%), Gaps = 7/323 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMV 59 +R+G + ++ +PMAG+T+ PFR LC E G L V+EM+++ V + K+ Sbjct: 41 IRLGDVMVNTPVMLSPMAGVTNWPFRVLCEEYGPDGLYVAEMVTARALVERNPKALRLCR 100 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYP 118 IR++Q+ G +P M AAR V++G +D+N GCP KV R+ GSAL Sbjct: 101 FAPSERIRSLQLYGVNPSIMEQAARFLVDNGMMDHLDLNFGCPVPKVTRRGGGSALPWKT 160 Query: 119 DVVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 D+ I+ VV ++PVT KIR G EH E ++A++ G A+T+H RT A Sbjct: 161 DLFTEIVQRVVAVCEPANIPVTAKIRVGLDHEHETFLEAGRIAQEEGCSAVTLHARTTAE 220 Query: 176 LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 + G +++ I + + IPV NGDI A A+++ TG + IGR QGRPW+F Sbjct: 221 YYGGHSDWCRIGELVSTLDIPVFGNGDIWGAEDAIAMVNETGCAGVAIGRGCQGRPWLFG 280 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY--GPAKGYRIARKHVSWYLQEHAPN 293 I + ++ L EV R++ H L +FY RKHV+WYL+ Sbjct: 281 NIGNAFAGSDVRINPTLGEVGRIIMRHAELLTEFYDGDERMAVHDLRKHVAWYLKGFPVG 340 Query: 294 DQFRRTFNAIEDASEQLEALEAY 316 RR F E + E ++A Sbjct: 341 GSTRRAFMECESLKDVREQVDAL 363 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 167/317 (52%), Gaps = 1/317 (0%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G + N +I APMAGITD P R L GAGL + M+S+ V +K+ + Sbjct: 4 LSLGNIEFDNNIILAPMAGITDLPLRRLAKSGGAGLVYTGMLSARALVRSDEKTEKLLKT 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ QI GS MA+AA+I SGA IID+N+GCP KKV + AG+ LL + Sbjct: 64 TEDERPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKL 123 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V IL VV +VDVPVT+KIRTG PEH EI ++A +CGI+ + +H R + +G Sbjct: 124 VSEILESVVKSVDVPVTVKIRTGLLPEHNAATEIIKVAYNCGIKMVAVHARPASQGHSGF 183 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + A IPVIANG + D A L +MIGR A G IF+ ++ + Sbjct: 184 PDLKLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGALGNYSIFKRLEAF 243 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +G+ LP E L HV+ ++YG KG+ + +K +Y+++ + R F Sbjct: 244 FSSGKKLPLPSKTEKVEWLKKHVQYSVEYYGEKKGFVVMKKVFHYYVKDLPNAAKIRDIF 303 Query: 301 N-AIEDASEQLEALEAY 316 N I S+ E ++ + Sbjct: 304 NKKIVTLSDFNELIKLF 320 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 108/315 (34%), Positives = 157/315 (49%), Gaps = 2/315 (0%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHID 62 G L R + +P+AG T+ PFR + +E+G GL ++++++ + S+K+ + Sbjct: 42 GPLVLPFRTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKTLRLIATHP 101 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 VQI G + M DAA++ G IDINMGCP KV + AG++L+ + D Sbjct: 102 IDRPFAVQIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADAAT 161 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 ++ VV AV VPVT+K+R GW A+ E G+ A+ IHGRTRA F+G Sbjct: 162 ELVKAVVEAVHVPVTVKMRLGWDASQLTAPRFAREFEQVGVAAVAIHGRTRAQGFSGTVN 221 Query: 183 YDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 D IR V + V IPVIANGDI A A+ D TG A+ IGR A PWIFR++ + Sbjct: 222 RDGIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIFRQLTEWE 281 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 TG+ P + L+ R L ++ G RK WY + R Sbjct: 282 TTGDWAPAGSFNDRLLLMRRQFRYLQEWVGEETAVSAFRKMSHWYTKAMRVGPALRHAVQ 341 Query: 302 AIEDASEQLEALEAY 316 + + E +AL+ Sbjct: 342 SAKTGEEFEQALQEI 356 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 117/328 (35%), Positives = 177/328 (53%), Gaps = 11/328 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 M+IG YQ R AP+AG++DRPFR +C MGA +EM+S++ + + ++ + Sbjct: 1 MQIGPYQFPGRYFLAPLAGVSDRPFRAICRRMGASFAYTEMVSAHGLMHGALQTSSYLDR 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQI S+P +A A + V++GA +ID+NM CP KKV AG+A+ + P Sbjct: 61 EPDEDPFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRK 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 V+ + + AV VPVT+KIR GW NC ++A+ AE G A+ +HGRTR+ L++G+ Sbjct: 121 VEEAVRAIRAAVPVPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRTRSQLYSGK 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A ++ +RAVKQ V+IPV+ +GD+ A + + TG DA+++ R A G PWIFRE++ Sbjct: 181 ARWELVRAVKQAVAIPVLGSGDVWTAGDAVRMREETGCDAVLVARGACGNPWIFRELKAI 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFY-----------GPAKGYRIARKHVSWYLQE 289 PP E + HVR + R RKH+ WY + Sbjct: 241 EAGRPPPPPPGRDEWVGTVLEHVRLQVEHRARMAPGEPAEASERHAIRELRKHLLWYTRG 300 Query: 290 HAPNDQFRRTFNAIEDASEQLEALEAYF 317 FRR A+ A++ LE +F Sbjct: 301 RRGGVHFRRDAAALVTAADVATLLERHF 328 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 112/315 (35%), Positives = 161/315 (51%), Gaps = 11/315 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG + L+AAP+AG +D PFR LC E GAGL SEM+S + V + + Sbjct: 4 LLIGPLSILPPLVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLAT 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 +Q+ G++P+ M +AA I IDINMGCP +KV +K AG+AL++ P++ Sbjct: 64 TAAERPLLMQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPEL 123 Query: 121 VKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +I V A D+PVT+KIR+GW + N + A+L G A+TIH RT + F G Sbjct: 124 AAAITGAVTAAAGDLPVTVKIRSGWNHKQINAPDFARLLVAHGAAAVTIHARTWSDGFTG 183 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ I AVK+ VS+PVI NGDI +A A++ TG D +MIGR A G PW+F Sbjct: 184 RADWAVIAAVKRAVSVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVF----- 238 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 T PLA+ H+ L + PA R + Y ++ + RR Sbjct: 239 ---TPGAEQNPPLAQRLAAARRHLE-LIRHWRPADNPARVRNQLGRYFKKIPGGARLRRQ 294 Query: 300 FNAIE-DASEQLEAL 313 + + L Sbjct: 295 IYDHNGSIDQLEQLL 309 >UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW05_9BACE Length = 307 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 120/306 (39%), Positives = 159/306 (51%), Gaps = 2/306 (0%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAG+TD FRT+C E+GAG T++EM+S+ ++ KS + + QI GSD Sbjct: 1 MAGVTDMAFRTICRELGAGYTITEMVSAKALCYQDKKSIPLLKLGEGEHPCAAQIFGSDE 60 Query: 77 KEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN-AVDV 134 K M +AA I E SGA IIDINMGCP KV GS L++ D + VV A + Sbjct: 61 KCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAGER 120 Query: 135 PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS 194 PVT+K R GW NC E A+ E G+ A+ +HGRTR ++ G A +D IR VKQ VS Sbjct: 121 PVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTRTQMYAGTANWDYIREVKQAVS 180 Query: 195 IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAE 254 IPVIANGD+ D A +L YTGAD MIGR G PW+F++ + L+ E+ P PLAE Sbjct: 181 IPVIANGDVFDGPAAAHILRYTGADMAMIGRGCFGNPWVFQQARAALEGEEIPPLPPLAE 240 Query: 255 VKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALE 314 G ARK +WYL+ A ++ + I + Sbjct: 241 RVDTAVRQFELAAAHKGEHIACLEARKQYAWYLKGVAFAGYYKEQISHISTLEDIYRITA 300 Query: 315 AYFENF 320 + Sbjct: 301 GIKRDL 306 >UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX2_9PROT Length = 311 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 169/318 (53%), Gaps = 13/318 (4%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 I + + AP+AG TD PFR++ E G +T SEM+++N + ++K++ M Sbjct: 4 ISILKSKPLFFLAPLAGYTDLPFRSVVKEFGCDMTFSEMINANAIAFNNEKTKKMMQKSS 63 Query: 63 EPGIRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQY--PD 119 + +QIA ++ + A I E IDIN+GCP K R G LL+ + Sbjct: 64 KETPYFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKE 123 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +K I++ ++ V+ K+R G+ + A++ ED GI+ LT+HGRT ++ G Sbjct: 124 KLKEIVSAIIKTSKKIVSAKMRLGYNE--VVAVDRAKMLEDLGIKFLTVHGRTVKQMYKG 181 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A Y I+ V ++V+IPVIANGDITD KA+ VL+YT A+ + IGR G+PWIF E++ Sbjct: 182 NANYKEIKKVVKEVNIPVIANGDITDYKKAKEVLEYTEANGVAIGRGVIGKPWIFLEMKQ 241 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + + + K ++ H + + ++YG G + RKH+ Y + +FR Sbjct: 242 QGE-------ITPYQKKEVILTHFKAMIEWYGD-YGVILFRKHLHQYSKGIKNASEFRSK 293 Query: 300 FNAIEDASEQLEALEAYF 317 N+ E+ E + +E YF Sbjct: 294 INSTENKDEVINLIEEYF 311 >UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia profundicola AmH RepID=B9L781_NAUPA Length = 313 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 112/322 (34%), Positives = 165/322 (51%), Gaps = 14/322 (4%) Query: 1 MRIGQYQLRNRLI-AAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 M I + + AP+AG TD PFR++ + G +T SEM + N ++++K++ M Sbjct: 1 MNISTLKSDSPYFFLAPLAGYTDLPFRSVVKKFGCDMTFSEMTNVNAIAYQNEKTQKMME 60 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQY- 117 VQIA ++ + A I E IDIN+GCP K R G LL+ Sbjct: 61 KSPLENPYFVQIAANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDE 120 Query: 118 -PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 D +K ++ +V PV+ K+R G+ E+ A+L ED GI LTIHGRT + Sbjct: 121 NRDFLKEVVGTIVKTSKKPVSAKMRIGFDKS--VVEDRAKLLEDLGIVFLTIHGRTVKQM 178 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + GEA+YD I+ V IPVIANGDITD KA+ VL+YTGA + IGR A G+PWIF E Sbjct: 179 YKGEADYDEIKKGVNAVKIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKPWIFLE 238 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 ++ + + + K ++ H ++ +YG G + RKH Y + +F Sbjct: 239 MKQQGN-------ITSEQKKEVILEHFNQMVYWYGE-YGVILFRKHAHAYSKGIPKASEF 290 Query: 297 RRTFNAIEDASEQLEALEAYFE 318 R N ++D + +E YF Sbjct: 291 RSKMNEVKDPEVARKLIEEYFN 312 >UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylobacter RepID=A7H1K2_CAMJD Length = 308 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 172/311 (55%), Gaps = 13/311 (4%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + L APMAG +D PFR + + GA +T+SEM+SSN V+ES K+ + + Sbjct: 6 KKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELENPYI 65 Query: 69 VQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQIAG D + + A ++ + ID N GCP KV ++ AGSALL+ ++ K+++ Sbjct: 66 VQIAGGDKEVLKKAVQMLNKMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFKNLVGV 125 Query: 128 VVNAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + +T +K R G+ ++ E++A++ E G+ +++HGRTR L++G+A+Y+SI Sbjct: 126 IKENNKKSLTSVKFRLGFNEKYP--EKMAKICESLGVDFVSVHGRTRKQLYSGKADYESI 183 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + K V IPVIANGDI + A+ V T D LMIGRA+ G PWIF EI+ E Sbjct: 184 ASAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWIFYEIKSGKSVDEK 242 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 L K ++ H E+ Y +G I RKH+ Y + H FR N I++A Sbjct: 243 L-------KKEIILTHFDEMIKHYKD-QGVSIFRKHLHEYSKGHKDASAFRDGVNRIDNA 294 Query: 307 SEQLEALEAYF 317 + + +E +F Sbjct: 295 EKMRKKIEEFF 305 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 99/316 (31%), Positives = 156/316 (49%), Gaps = 9/316 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 IG Q + + AP+AG TD FR LC++ GA TVSEM+S + + ++ + Sbjct: 2 FTIGPNQFSSPFVLAPLAGYTDLSFRLLCHQFGADYTVSEMISCHGLFYNQQRTLEMLAS 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + E + Q+ G++P MA A I + +IDINMGCP +KV +K AG+AL+ P++ Sbjct: 62 LPEERPVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPEL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ VV+ D+PVT+K R G + N E + E G A+ +HGRTRA F+G Sbjct: 122 AYDVIRSVVDNTDIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVHGRTRAQAFSGV 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+ I+ VK+ +SIPVI NGDI ++ TG D +M+GR A G PW+F+ Sbjct: 182 ADRGIIKEVKEALSIPVIGNGDILSYQDGLDMMAETGCDGVMVGRGALGNPWVFQ----- 236 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 P + + H+ + F + + + H+S Y ++ + + R Sbjct: 237 ----ASGKPANIHGLAAGALQHLLLMERFNPVERVLGLIKNHMSKYFKDMPGSSRLRTAI 292 Query: 301 NAIEDASEQLEALEAY 316 E + Sbjct: 293 FTASSFLELKGMITEL 308 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 106/328 (32%), Positives = 160/328 (48%), Gaps = 12/328 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-------AGLTVSEMMSSNPQVWESDK 53 +RIG +L + ++ APMAG+T+ FR LC ++ +GL V EM+++ + Sbjct: 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 Query: 54 SRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGS 112 + + R++Q+ DP AAR+ G A ID+N GCP KV ++ G+ Sbjct: 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 Query: 113 ALLQYPDVVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIH 169 AL + I+ V A D+PVT+K R G H + ++AE G A+ +H Sbjct: 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 Query: 170 GRTRACLFNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 RT A ++G A+++ I +KQ V IPV+ NGDI D A A++ TG D ++IGR Sbjct: 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 Query: 229 GRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 GRPW+F E+ P L EV ++ H L +G KG R RKH++WYL Sbjct: 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 Query: 289 EHAPNDQFRRTFNAIEDASEQLEALEAY 316 RR ++ E L+ Sbjct: 313 GFPAGSALRRALAMVKTFDELDCLLDRL 340 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 109/341 (31%), Positives = 171/341 (50%), Gaps = 25/341 (7%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG--LTVSEMMSSNPQVWESDKSRLRM 58 +RIG + + ++ APMAGIT+ PFRTLC E G L VSEM+++ V ++K+ + Sbjct: 16 LRIGPHTVAPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLI 75 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQY 117 R++Q+ G DP + A R+ E G A ID+N GCP KV RK GSAL Sbjct: 76 HFDATETPRSIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYK 135 Query: 118 PDVVKSILT-EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 ++++I+ V A D+PVT+K+R G +H + ++A + G+ A+ +HGRT A Sbjct: 136 RHLLRAIVREAVTGAGDLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTAQH 195 Query: 177 FNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 + G A++D+I +K+ V IPV+ NGDI A ++ TG D +++GR GRPW+F Sbjct: 196 YGGTADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRPWLFA 255 Query: 236 EIQHYLDTG-ELLPPLPLAEVKRLLCAHVRELHDFYGP-------------------AKG 275 ++ + + L EV ++ H L ++ A+G Sbjct: 256 DLVAAFEGRTDSFVRPTLREVADVMVRHATLLGEWIENGGTARRATVEGGGGRREGEARG 315 Query: 276 YRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAY 316 RKHV+WYL+ A + R+ L+ Sbjct: 316 VIDFRKHVAWYLKGFAVGSEMRKRLAVTSSLEALRAGLDEL 356 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 133/321 (41%), Positives = 187/321 (58%), Gaps = 9/321 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +R+G ++RNR+ APM+G+TD PFR L + GAG V+EM++S V + +S R+ + Sbjct: 17 LRVGNVEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN 76 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQ+AG + MA+AA+I +GA I+DINMGCPAKKV +GSAL++ PD Sbjct: 77 SGID-PHIVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDH 135 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 S++ V AV VPVTLK+R GW N IA+ AE+ G+QA+TIHGRTR +NG Sbjct: 136 ALSLIEATVKAVRVPVTLKMRLGWDENSINAPLIARRAEEAGVQAITIHGRTRMQFYNGN 195 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D+IRAV+ +SIP+IANGD+ A +L +GADA+M+GR+ QGRPW H Sbjct: 196 ADWDAIRAVRDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRPW------HA 249 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN--DQFRR 298 E+ + H + DFYGP G R ARKHV WYL+ AP+ + + Sbjct: 250 GALAGAADEPAATEIAAIFVEHYAMMLDFYGPEIGLRHARKHVGWYLERFAPDLLTERKA 309 Query: 299 TFNAIEDASEQLEALEAYFEN 319 +D + + Sbjct: 310 EMLTSKDVKLVSDRVATAIAR 330 >UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S213_NEMVE Length = 570 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 127/287 (44%), Gaps = 10/287 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 ++L AP+ I + PFR +C + GA +T EM + + Sbjct: 214 IDFSDKLYLAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQQSEWALVKRHSSED 273 Query: 66 IRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQ+ G+ P M A + E+ IDIN GCP V K AGSAL++ ++ I Sbjct: 274 IFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERKGKLQQI 333 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEH--RNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 + + + +D+P+T+KIR G + N ++ D G +TIHGR+R + A+ Sbjct: 334 VQGMKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQRYTKSAD 393 Query: 183 YDSIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 +D I V + +PV NGDI A G +MI R A +PWIF EI+ Sbjct: 394 WDYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAGVAGVMIARGAIIKPWIFTEIKEQR 453 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L V + +G +G R+ + +L Sbjct: 454 HWD-----ISSSERLDILRQFVNAGLEHWGSDTQGVEKTRRFLLEWL 495 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 108/322 (33%), Positives = 160/322 (49%), Gaps = 4/322 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +RIG+ L L+ APMAG+TD +R L + GA + +EM+S V + Sbjct: 13 LRIGKLLLDLPLVLAPMAGVTDSAYRALMADFGAAMVTTEMVSIQGLVRNQRATLDLCRQ 72 Query: 61 -IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 VQ+ G DP MA+AAR+ + GA +IDIN GCP +KV R+ AG+ LL+ PD Sbjct: 73 QHPVGVPLAVQVFGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPD 132 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + +++ V AV VPVT+KIR GW +A+ G+ A+T+HGRT A +++G Sbjct: 133 RLAAMVEAVKRAVSVPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRTAAQMYSG 192 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ I VK V++PVI NGD+T P A ++ TG D +MIGRA+ G PW+F I Sbjct: 193 RADWSRIAEVKAAVAVPVIGNGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVISR 252 Query: 240 YLDTGELLPPLP-LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 G P + R AH+ + +K + WY + + R Sbjct: 253 RWGRGARQGDCPGWNDFLRTAEAHLESFRTMRP--RADGHLKKLLIWYSKGCPDSAGLRC 310 Query: 299 TFNAIEDASEQLEALEAYFENF 320 + L A ++ Sbjct: 311 RIAGPDGIESMLAAFRSWVHEL 332 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 158/315 (50%), Gaps = 3/315 (0%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 QL +R++ +P+AG+TD+ FR L L +EM+++ E G Sbjct: 34 QLHSRVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELGHGYG-KMDDLKAEEG 92 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ P MA AAR ++GA +IDINMGCP +K+ +K GS L++ P++ IL Sbjct: 93 PIAVQLFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQIL 152 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 VV+AV +PVT+K R GW + + ++ G Q LT+HGRTR F G+A +++ Sbjct: 153 EAVVDAVSIPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLHGRTREQGFKGQANWNA 212 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I VKQ ++IPVIANGDI P A L+ TGAD +M+GR G PW+ +I+ Sbjct: 213 IAEVKQALTIPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLVGQIEAAFMNRP 272 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 + L + +L G + G IARKH+SW Q R + Sbjct: 273 IPATPDSGARLHLAKEQLHDLVSSRG-SHGLLIARKHMSWTCTGFPGAPQLRHSLMRATT 331 Query: 306 ASEQLEALEAYFENF 320 + + ++ + Sbjct: 332 PDDAYQLIDNAINSL 346 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 305 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 99/309 (32%), Positives = 165/309 (53%), Gaps = 4/309 (1%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 + APM G+T+ FR+LC GA + +E +S++ + DK + ++ I+ VQI Sbjct: 20 VFLAPMEGVTNVYFRSLCKSFGADMVYTEFISADALIRHVDKIQGKLKIINSEHPIAVQI 79 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G D M +AARI E +D+N GCP KK+ R+ AG+ +L+ P + I +VV++ Sbjct: 80 YGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEITQQVVHS 139 Query: 132 VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 V++P+T+K R GW + ++A+ +D GI LTIHGRT + +++G+A+++ I AVK Sbjct: 140 VNIPITVKTRLGWDENSKIIVDLAERLQDTGIALLTIHGRTGSQMYSGKADWNLIGAVKN 199 Query: 192 KVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 IP+ NGDI P + + G DA+MIGRA+ G PWIF+E+++YL +L P Sbjct: 200 NPRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWIFQEVKYYLKYNDLAPK 259 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHV--SWYLQEHAPNDQFRRTFNAIEDAS 307 +L + + G +G +R+H+ S ++ + + S Sbjct: 260 KSFEYYLSVLKQQILQSVSQLGERQGILNSRRHIVASPLFKKMSNFKLTKIAMLQAITVS 319 Query: 308 EQLEALEAY 316 E ++ Sbjct: 320 SLFEIMDNI 328 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 130/315 (41%), Positives = 181/315 (57%), Gaps = 10/315 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 +RNR++ APM+G+TD PFR L + GAGL V+EM++S V ++ +S R+ Sbjct: 1 MSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF-R 59 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+AG + MA+AA+I + GA IIDINMGCPAKKV +GSAL++ PD ++ Sbjct: 60 PHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLI 119 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 V AVD+PVTLK+R GW N +IA+ AE GIQ +TIHGRTR + G A++D+ Sbjct: 120 EATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQFYEGRADWDA 179 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 IRAV++ +S+P+IANGD+ A+ +L +GADA+MIGR QGRPW + Sbjct: 180 IRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPW-------HAGVLA 232 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP--NDQFRRTFNAI 303 ++ + H R + DFYG A R ARKH+ WYL+ AP + Sbjct: 233 GAAEPRREDIADIAVEHYRMMLDFYGEAVAIRHARKHLGWYLERFAPALAGTEKAGIMTS 292 Query: 304 EDASEQLEALEAYFE 318 D E L + Sbjct: 293 RDPREVAARLYHALD 307 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 304 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 163/314 (51%), Gaps = 1/314 (0%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R ++ APM +TD FR + E+GA L V+E ++ + +R ++ D Sbjct: 14 RRPVVLAPMEDVTDAVFRRIGRELGAELCVTEFVNVEGLLRGCKTARRKLALADGDQPTA 73 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +QI G++P+ +A+AAR+ E+G +DIN GC K+ + AG+ L+ P+ + ++ V Sbjct: 74 IQIYGANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDPEAMVAMARLV 133 Query: 129 VNAVDVPVTLKIRTGW-APEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 +V +PVT+K R GW H ++A+ ED G+ ALTIH RT +G A++ Sbjct: 134 TRSVALPVTVKTRIGWGPESHMPIVDLARRLEDAGVAALTIHCRTAQMGHSGAADWGWAA 193 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 ++ VSIPV+ NGDI A L TG +M+GRAA PWIFRE + LD G L Sbjct: 194 RAREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRAAIDHPWIFREARALLDDGVHL 253 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 PP E L AH+ + G G R+ R+H++ YL+ RR + S Sbjct: 254 PPPTAEERLALCRAHLIANTEARGEPHGVRVTRRHLTGYLRGLPGASALRRELLFCDSLS 313 Query: 308 EQLEALEAYFENFA 321 L+ L++ + A Sbjct: 314 GCLDILDSAAQRLA 327 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 155/309 (50%), Gaps = 6/309 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 L APMAG+TD FRT+C E+G + V+E +S+ + +++R + +Q Sbjct: 18 PLFLAPMAGVTDPIFRTICKELGVDVMVTEFVSAEGILQAWERNRRYTKIENAHRPIGIQ 77 Query: 71 IAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 + G+D M +AARI ++ IDIN GCP KV K GS+LL+ ++ S+ VV Sbjct: 78 LFGADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLLKDLPLLASVAGGVV 137 Query: 130 NAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 AV +PVT KIR GW + + +L E+ GI +TIHGRTR+ ++G A +D I Sbjct: 138 KAVGERIPVTAKIRIGWDFQSLCAMDACRLLENEGISMITIHGRTRSQQYSGTANWDIID 197 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 + +S+PVI NGDI+ P V + T +MIGRAA PWIF + ++YL G + Sbjct: 198 ECARAMSVPVIGNGDISTPQAVAYVKENTAVSGVMIGRAAMENPWIFGDAKYYLLHGTMP 257 Query: 248 PPLPLAEVKRLLCAHVRELHD--FYGPAKG-YRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 P E L+ H R + YG R R + Y + + R + Sbjct: 258 PARDPQEKAALILRHARMALESRHYGDELHTMRHMRSRILAYTKGFPGAKEMRSRLVRVS 317 Query: 305 DASEQLEAL 313 E + L Sbjct: 318 SMPELEDLL 326 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 89/310 (28%), Positives = 150/310 (48%), Gaps = 3/310 (0%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 + APMAG TDR FR L YE G V+EM+S+ + K+ + VQ Sbjct: 3 KFFMAPMAGYTDRAFRQLIYENGLDHAVTEMVSARALCFNDRKTLELLKKFPGEKNTGVQ 62 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I SD + ++ A+ + + IDINMGCPA K+ + GSAL++ P++V ++ V Sbjct: 63 IFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVYELVKGAVK 122 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 + +++K R + +I + A+D G A+T+H R+R + ++++ + +K Sbjct: 123 NSNKKISIKTRKSFDNTLS--LDIIRAAQDAGAFAVTVHPRSREEYYKNKSDWQYLIKIK 180 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 + ++IP+I NGDI A + D + IGR A P IF +I+ L GE L Sbjct: 181 KFLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQIKKAL-KGEKYEEL 239 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQL 310 + +L H+ ++ G + RK ++YL+ + + R N D + + Sbjct: 240 NFNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKEIRNKLNVENDYTNVV 299 Query: 311 EALEAYFENF 320 + LE Y E Sbjct: 300 KILEEYREQM 309 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 99/322 (30%), Positives = 162/322 (50%), Gaps = 6/322 (1%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 RI + +N+LIAAP+AG+T PFR L + GL +EM+S ++D++ + Sbjct: 10 RILRILNKNKLIAAPLAGVTTPPFRKLLRKYFDGLIYTEMVSVEGVRRKADRTLSYLSIT 69 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+ GS P+ +A + + A+ +DINMGCP KKV + +G A+++ P Sbjct: 70 ESDQPIGVQLFGSKPEAYTEAIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVN 129 Query: 121 VKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 I+ A+ DVP+T+KIR GW ++ N E+ ++A + G +A+T+HGRT+ +F+G Sbjct: 130 SGKIVAAAKKALGDVPLTVKIRLGWDKKNLNYNEMIKIAYEEGAEAVTVHGRTKTEMFSG 189 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 YD I K +P+I NGD+ D +L TG D +MIGR +PW+F I Sbjct: 190 VVNYDLIADAKANAKLPIIGNGDVVDVATYEKMLA-TGVDGVMIGRGMMKQPWLFESI-- 246 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 L+ + + ++ L+ VR + G +K++ W+L+ R Sbjct: 247 -LNGRDPSGYMTYDKLYELIKELVRNEKIYKGEMFFLETVKKYIVWFLKGMPGAAALRNK 305 Query: 300 FNAIEDASEQLEALEAYFENFA 321 +E L+ YF Sbjct: 306 LYMCPTETEMFVMLDEYFGRLG 327 >UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EC62_9ACTN Length = 347 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 103/313 (32%), Positives = 150/313 (47%), Gaps = 6/313 (1%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 + APMAG+TD +R +C GA L SEM+S + S+K+ ++ DE VQ Sbjct: 18 PFLMAPMAGVTDPAYRIMCRRRGANLAYSEMVSVAGLAYASNKTWRLVLPADEEQQICVQ 77 Query: 71 IAGSDPKEMADAARINVESGAQ---IIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 + GS P++ A A E +IDINM CPA+KV K GSAL++ PD+ + I+ Sbjct: 78 LFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLAEKIVEA 137 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 V A VPVT+KIR G+ E RN AQ+ E G A+ +HGR L+ G+A++ + Sbjct: 138 AVGAAHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHGRCATQLYTGQADWSVVD 197 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 V V IPVI +GD+ A L +GA A+ I R G PW+F + + G + Sbjct: 198 EVADAVEIPVIGSGDVFSAEDAAEHLQGSGASAVFIARGIYGNPWVFGDARALALDGTPV 257 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 P E L H+ H+ AR + SWYL+ +R Sbjct: 258 PSRSSVERLEALREHLTLTHELLP---LMSRARTYASWYLKGMPHAAAWRAQVVRCSTYE 314 Query: 308 EQLEALEAYFENF 320 E + ++ + Sbjct: 315 EFMALVDDIERDV 327 >UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xenopus RepID=DUS3L_XENLA Length = 640 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 9/285 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 RN+L AP+ + PFR +C +GA +T EM + + Sbjct: 291 IDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGEMAMCTNLLQGQPSEWALLKRHHSED 350 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQ+ G+ P M A + + +DIN+GCP V +K G L+ + + I Sbjct: 351 IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQI 410 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + + +DVP+T+KIRTG + ++ D G+ +T+HGR+R + A ++ Sbjct: 411 VKGMNSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRYTKLANWE 470 Query: 185 SIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 I + +P+ NGDI A L TG +M+ R A +PW+F EI+ Sbjct: 471 YIDQCAKIASPVPLFGNGDIISYEDANRALQ-TGVAGVMLARGALFKPWLFTEIKEQRHW 529 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L + +G +G RK + +L Sbjct: 530 D-----ISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWL 569 >UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like (S. cerevisiae) n=2 Tax=Taeniopygia guttata RepID=UPI000194DF67 Length = 718 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 9/286 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + +++ +L AP+ + PFR +C GA +T EM + + Sbjct: 368 KLEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQSSEWALLKRHHTE 427 Query: 65 GIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 I VQ+ G+ P M A + + +DIN+GCP V +K G AL+ + + Sbjct: 428 DIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKFEQ 487 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+ + + +DVPVT+KIRTG + ++ + G +T+HGR+R + A++ Sbjct: 488 IVRGMNSVLDVPVTVKIRTGVQEKVNVAHKLIPRIREWGASMVTLHGRSREQRYTRSADW 547 Query: 184 DSIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 I + +P+ NGDI A + G +MI R A +PW+F EI+ Sbjct: 548 HYIAECARLASPMPLFGNGDILSYEDANRAMQM-GVSGIMIARGALIKPWLFTEIKEQRH 606 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + +G +G RK + +L Sbjct: 607 WD-----ISSSERFEILKDFTNYGLEHWGSDTQGVEKTRKFLLEWL 647 >UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Planctomycetaceae RepID=D2R6Z1_9PLAN Length = 345 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 155/324 (47%), Gaps = 9/324 (2%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKS----RLR 57 IGQ ++ ++ APMAG T+ +R + E G AGL +EM++++ W + Sbjct: 6 IGQVKVDPPILQAPMAGYTNYAYRQMVREFGGAGLQATEMVNASGFAWLHEHEAEHPDRL 65 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVN-RKLAGSALL 115 +E VQ+ +DP +A R+ E ++DIN GCP K V + +GS LL Sbjct: 66 WGVKEEARPLAVQMWDNDPATLAKVGERLANELHVSVVDINFGCPVKDVTEKAHSGSYLL 125 Query: 116 QYPDVVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA 174 ++PD + I+ VV A PVT KIR G + + N EIA++ E G ALT+HGRT A Sbjct: 126 KFPDRIAQIVERVVKACAPTPVTAKIRLGCSRDAINAIEIAKVVESAGAAALTVHGRTAA 185 Query: 175 CLFNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 F G A+++ I +K + IP+I NGD+ P K G D +MI RA+ GRPW+ Sbjct: 186 DFFRGTADWNRIAEIKPHLKKIPLIGNGDLDSPEKVIEAFRRYGVDGVMIARASMGRPWL 245 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN 293 FR+ L + P E + + H +G KG + RK Y Sbjct: 246 FRQAAAALRGEPVPPDPTAEEQRLTMLRHYELTCARFGEQKGTLLMRKFACNYATGRPGA 305 Query: 294 DQFRRTFNAIEDASEQLEALEAYF 317 FR + + +E YF Sbjct: 306 RTFRAMVANVFTREDFFNVVERYF 329 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 154/321 (47%), Gaps = 6/321 (1%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 I + +R APMAG TD FR L + GAGL V+E++S+ + K+ M H + Sbjct: 7 IEGVNIPSRFFLAPMAGYTDYVFRRLSRKFGAGLLVTELVSAAALARQVKKTYRYMEHKE 66 Query: 63 EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 + ++Q+ G++ + A I SG IDINMGCP KKV + G+ LL+ D + Sbjct: 67 DEYPISLQLFGANEDDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTDKMI 126 Query: 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 S+L V + +PV++KIR G E A ++ G LT+HGR + ++ G A+ Sbjct: 127 SVLNAVKSVSPLPVSVKIRLGLKRGEGGEIERALAMKENGACFLTLHGRYASDMYRGTAD 186 Query: 183 YDSIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +++I +K+ + +I NGDI A D + D +M+GR A G PWIF E+ Sbjct: 187 WEAIAKIKEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAIGNPWIFTELNTI 246 Query: 241 L-DTGELLPPLPLAE-VKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 D E + + +K ++ H+ + YG G RK + YL + ++ Sbjct: 247 FEDNDEYNNKIDEKDNLKNIIKEHINGCCELYGEVSGIHFMRKFIMKYLTGYRMENKI-- 304 Query: 299 TFNAIEDASEQLEALEAYFEN 319 E+ E + L+ Sbjct: 305 ELMKCENKEELFKILDNIITE 325 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 125/293 (42%), Positives = 175/293 (59%), Gaps = 5/293 (1%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDK----SRLRMVHIDEP 64 ++ APMAG+TD PFR L ++ G L+ +EM++S + E + Sbjct: 11 DPLIMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVDPRLGGGAEAGRA 70 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 G VQ+AG DP MA+AAR +GA++IDINMGCP +KV L GSAL++ + I Sbjct: 71 GPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARI 130 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 L VV AV +PV+LK+R GW RN E+A+LAE GI LT+HGRTRA +++G A++ Sbjct: 131 LEAVVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGRADWP 190 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 +I VK+ VS+PVIANGD+T+ +AR +L TGAD +MIGRAA G PW+ I + G Sbjct: 191 AIGLVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAPWLPGAIARAIAAG 250 Query: 245 -ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 PP LAE ++ AH+ L +G +G + +RKH+ WY + F Sbjct: 251 TRETPPPALAERAAVMAAHLEGLLACHGLERGLKTSRKHMGWYARTMPQGADF 303 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 127/315 (40%), Positives = 186/315 (59%), Gaps = 6/315 (1%) Query: 1 MRIGQYQLRNRLIA-APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMV 59 + +G++ ++ APMAGI+D P+R+LC G+ T++EM+ + PQ +S+LR+ Sbjct: 2 LTLGRFHYSKPVVLLAPMAGISDLPYRSLCQRFGSHYTIAEMVDARPQFLAMPESQLRLQ 61 Query: 60 HIDEPG-IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 D+ + VQ+ G DP MA+ A++ G +IDINMGCPAKKV ++ AGSALL Sbjct: 62 FDDDARFPKIVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDL 121 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 V+ IL +V V +PVTLK R G+ + E +A++AE+ G+ ALT+HGRTRA FN Sbjct: 122 PQVEKILAQVTRVVSIPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTRAQRFN 181 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A YD I VK + S+P+I NGDIT +A+ ++ G D +MIGRAA G PW+ ++ Sbjct: 182 GTAHYDEIGRVKAQTSLPIIVNGDITTTAQAQDLIQQFGFDGVMIGRAACGNPWLLAHMR 241 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 LD LP + + ++ H+ LH Y +G IARKH+ WYL D +R+ Sbjct: 242 CALDCDFALPAIS---RRAVISEHISALHQLY-QRQGLLIARKHLHWYLAPMPRYDFWRQ 297 Query: 299 TFNAIEDASEQLEAL 313 N D + QL + Sbjct: 298 EINTATDLAAQLAIV 312 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 160/311 (51%), Gaps = 7/311 (2%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG---I 66 N+ I APMAG+T P+R EMG + +SEM+S+ ++S + M + + Sbjct: 16 NKAILAPMAGVTTLPYRLFMREMGCKIFISEMVSAKGLYYKSKNTFPLMETNELEHKDSV 75 Query: 67 RTVQIAGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 +QI GS+P+ M + ++ IDINMGCP KK+ GSALL+ D ++ Sbjct: 76 TGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLDKANKVV 135 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 EV +A PV++K+R G+ E+I + ED G +T+HGRTR +F GE +YD Sbjct: 136 REVKSASSKPVSVKVRLGFNEN--IIEDIIKAIEDGGADMITVHGRTREQVFTGEVDYDG 193 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I+ K+ S+P+IANGD+ + LKA+ +DYTGAD +MIGR A P+IF + + + Sbjct: 194 IKKAKETASVPLIANGDLDNYLKAKEKMDYTGADGVMIGRGANYDPFIFSQFNECISGKK 253 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 + L + H + K RK++ WY++ + + R + N + + Sbjct: 254 VSEY-SLRDKIDAARKHFEIHLKYSKDKKKVIEFRKYLYWYIKGIKNSAKIRNSINNVNE 312 Query: 306 ASEQLEALEAY 316 + E Sbjct: 313 IDQVYEIFNRI 323 >UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacteria RepID=A7I0T0_CAMHC Length = 310 Score = 300 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 166/312 (53%), Gaps = 11/312 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + L AP+AG +D P R++ G TVSEM+S+N V+ S+KS + + Sbjct: 6 NHPLFLAPLAGFSDLPLRSVVKRFGCDATVSEMISANALVFCSEKSLKMIKKSENETPYF 65 Query: 69 VQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQIAGSDPK + A I + G ID+N GCP KV R+ AGSALLQ D++ ++ Sbjct: 66 VQIAGSDPKIIKQAVEILNKIDGIDGIDLNCGCPVPKVVRQNAGSALLQNLDLLSKLIEI 125 Query: 128 VVNAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + + T K+R G+ +N IA ++ G + +H RTRA ++ + +Y++I Sbjct: 126 IKKTSNKKYTSAKVRLGFD--TKNPVNIALAVQNAGADFIAMHARTRAGGYSAKPDYEAI 183 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 A K V IP+IANG+I A +L+ T ADALMIGRA G PW+F EI++ Sbjct: 184 AAAKSAVKIPLIANGNINS-QNANQILNLTKADALMIGRATIGNPWVFYEIKNQ-----K 237 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 + K ++ AH E+ FYG I RKH+ Y + +A FR N I +A Sbjct: 238 TVAVDEKIKKEIILAHFDEMIKFYGDHGAV-IFRKHLHEYSKGYADATNFRCEINTITNA 296 Query: 307 SEQLEALEAYFE 318 + + ++ +FE Sbjct: 297 EKMRDKIKQFFE 308 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 154/321 (47%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MRIG L + L APM T PFR +C + GA L SE + + ++ + Sbjct: 1 MRIGNISLAHGLTLAPMEEHTSLPFRLICKQQGASLVCSERIDAKDVAERDKRAIKLLST 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 QI+G+D ++ +AAR+ E G ++D+N CP +++ + G AL+ P Sbjct: 61 TSAERPAVGQISGNDAAQIGEAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQPQR 120 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + ++ AV +PVT+K+RTG E AQ E G A+ +H R+ + G Sbjct: 121 IAELVAAAKQAVSIPVTVKLRTGPKAGEDTAVETAQRVEQAGGAAIILHARSVEQAYLGG 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 ++ + VK+ VSIPV+ +G + P A + L+ +GAD + IGR G PWIF++ + Sbjct: 181 PDWQHVTRVKEAVSIPVLGSGGVRTPQDAISFLESSGADGVAIGRGCLGNPWIFQQARTL 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L + AE ++L A V +FY + + ++ + +F++ Sbjct: 241 LFGSREIIEPSPAERGKVLLALVEHEFEFYSAHLAQKRLARTACYFAKFLPDFAEFKKEI 300 Query: 301 NAIEDASEQLEALEAYFENFA 321 +AI++ ++ + +F A Sbjct: 301 HAIKNLAQFRTLVREWFRPVA 321 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 163/323 (50%), Gaps = 5/323 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMV 59 + IG L++ ++ AP+AG +D P+R + G L EM+ + ++ + Sbjct: 5 IHIGNILLKSPIVYAPLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSPSRTLKLLE 64 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 + + Q+ GS P+ +AA++ G +ID+N GCP ++ + +GS LL+ P+ Sbjct: 65 YSESMRPIGGQLCGSKPEMAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKTPE 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ +L +++ +V +PVT+KIR+GW + N EE ++ ++ G A+ +HGRTRA + G Sbjct: 125 LIGKVLEKIIGSVSIPVTVKIRSGWDGNNINVEETVRIIKEAGASAVFVHGRTRAQGYVG 184 Query: 180 EAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 + + I K PV NGD+ P A+ +LD TG D +++ R G PWI R+I Sbjct: 185 PSNLEYIARAKAAAGKDFPVFGNGDVFSPEAAKLMLDSTGCDGVLVARGTMGAPWIARQI 244 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY-GPAKGYRIARKHVSWYLQEHAPNDQF 296 + YL TG +P + K+ H+ + ++Y AK RK YL A Sbjct: 245 EDYLTTGTY-QKMPFSTRKQAFLQHLHWVEEYYQSEAKFLCETRKLCGHYLISAAKVRFL 303 Query: 297 RRTFNAIEDASEQLEALEAYFEN 319 R + + +EAY E+ Sbjct: 304 RSALSKATSVQAVYQLIEAYEES 326 >UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F94 Length = 338 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 101/321 (31%), Positives = 156/321 (48%), Gaps = 7/321 (2%) Query: 5 QYQLRN-RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE 63 L + APMAG+TD +R L E GA TV+E +++ ++ S L++ Sbjct: 6 GVSLDPVPIFLAPMAGVTDLAYRLLAKECGADFTVTEFTAASGLTRKNTNSWLKVETDPR 65 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 QI G D EMA + + +IDIN GCPA KV R AG+ALL+ PD V S Sbjct: 66 EKPFIPQIFGGDISEMAKTVGMLEDRS-DVIDINFGCPAPKVCRNDAGAALLRDPDKVVS 124 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 ++ + + +VP+T+K+R G EI++ D G+ + +HGRT ++G A++ Sbjct: 125 MVRRCIESTNVPITVKMRLGTGSGPNTALEISKRLADEGVMRICVHGRTLRQRYSGIADW 184 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 D I+ + V IPVIANGD+ D A L+ T A LMIGR A GRP IF EI+H + Sbjct: 185 DQIKEISNSVDIPVIANGDVVDTKSAELCLEATNAGGLMIGRGAIGRPTIFHEIKHGMGW 244 Query: 244 GELLPPL----PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 P P ++ + YG + G + ++H + + R Sbjct: 245 SHKTAPWGKGGPSRARSWCWDRYLELSQEVYGDS-GSKNLKRHAISFTKGLEGASAMRVR 303 Query: 300 FNAIEDASEQLEALEAYFENF 320 ++I+D ++ + Y + Sbjct: 304 LHSIQDKTQLGTEVSNYLHDL 324 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 299 bits (766), Expect = 9e-80, Method: Composition-based stats. Identities = 101/320 (31%), Positives = 173/320 (54%), Gaps = 8/320 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G ++ + + APM+G TD PFR GA + ++EM++ + R+ Sbjct: 2 ISVGDVEINDAVFLAPMSGATDAPFRRQASRFGAPVVITEMIAGSELATGRQDMVWRITK 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+AG DPK M +AARI+ +GA IIDINMGCP+++V +G+AL++ D+ Sbjct: 62 PENTFPFVVQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDLDL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + ++ +PV++K+R GW + N +A++ E+ ++ +T+HGRTR + G+ Sbjct: 122 ARELIIAAREGGGLPVSVKMRLGWDDDTLNAPALAKICEEEHVKLITVHGRTRCQFYTGK 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+++ ++ VK ++P+I NGDI A+ + + AD +MIGRAA GRPW+ +I Sbjct: 182 ADWNKVKEVKLASNLPLIVNGDIDSSKTAKQAILLSQADGVMIGRAALGRPWLLGKIASD 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW---YLQEHAPN---- 293 L + +E LC V + YG G R+ RKH++ Y +E N Sbjct: 242 LANRPYIE-PTWSEKLSSLCEQVSDSVLLYGDRLGVRVFRKHLAAFIDYSKEIRLNTEDR 300 Query: 294 DQFRRTFNAIEDASEQLEAL 313 ++ R F I ++ + A+ Sbjct: 301 NELRGRFCRISSENDVISAI 320 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 99/319 (31%), Positives = 154/319 (48%), Gaps = 4/319 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG L +R AP+AG T FR E+G GL ++++ ++ + S KS+ + Sbjct: 14 IQIGGRVLASRYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALLT 73 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 T+QI G E+ AAR + G +D+NMGCP K+N G+ ++ PD Sbjct: 74 TSPADRPLTIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPD 133 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++ EVV+AV +PVT+K+R GW + +A+ E G+ A+T+HGRTR F G Sbjct: 134 AACQLVAEVVDAVSIPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVHGRTRNQGFGG 193 Query: 180 EAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 + IR + V IPVI NGD+ A + + TG +A+ IGR A PWIFR+I Sbjct: 194 TVDLQGIRQTVEAVQQIPVIGNGDVCTVEDAFRMREQTGCEAVSIGRGAMLDPWIFRKIS 253 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 + E + E + L H + + + G R+ RK +WY + Sbjct: 254 QAVR-DEPVTEPTRDEQIQFLERHFSLMFEQH-ELYGCRLIRKFAAWYGARLGIPEDLED 311 Query: 299 TFNAIEDASEQLEALEAYF 317 +E E + +E Sbjct: 312 RLRRLESDEEFKDIIEQIR 330 >UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3RKU4_TRIAD Length = 581 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 11/308 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 Q N+L AP+ + + PFR +C GA +T SEM + + + Sbjct: 230 QINFSNKLFLAPLTTVGNLPFRRICKTFGADVTCSEMALCTNLLQGQQSEWALVKRHESE 289 Query: 65 GIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + +Q+ G+ P +A + + +D+N+GCP V + AGSAL+ + ++ Sbjct: 290 DLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSALMGRANKLQQ 349 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+T + + + VP+T+K+RTG + ++ + G +T+HGR+R + A++ Sbjct: 350 IVTGMSSILSVPLTVKLRTGILAKKSTAHKLIPQIREWGASLVTLHGRSREQRYTKLADW 409 Query: 184 DSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 I +P+I NGDI ++ T +MI R A +PW+F EI+ Sbjct: 410 SYINECATAADPMPLIGNGDILSFEDYLEHMNNTNVAGVMIARGALIKPWLFTEIKERRH 469 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWY---LQEHAPNDQFRR 298 + E L +V + +G + G R+ + + L + P R Sbjct: 470 WD-----ISANERFEFLRKYVNYGLEHWGSDSLGVEKTRRFLLEWLSFLHRYIPIGVLER 524 Query: 299 TFNAIEDA 306 I D Sbjct: 525 VPQRINDR 532 >UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propionibacterium acnes RepID=Q6A959_PROAC Length = 411 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 156/314 (49%), Gaps = 5/314 (1%) Query: 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE 63 G + ++ APMAG+T+ FR LC E GAGL V EM++S V+ K+ + + Sbjct: 44 GTVSVDTPVVLAPMAGVTNAAFRQLCAEQGAGLYVCEMITSRGLVYGDHKTHGMLAFAEC 103 Query: 64 PGIRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 +R+VQ+ G DP + +A I + G +D+N GCP KV RK G L D Sbjct: 104 EDVRSVQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKLDRFA 163 Query: 123 SILTEVV---NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 ++++ V +A VPVT+K R G PEH + A+ A D G A+ +H RT A + G Sbjct: 164 AVVSAAVQAGDAHGVPVTVKTRIGIDPEHITYIDSARAAVDSGAAAVCLHARTVAEAYAG 223 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + +D+I + + V +PVI NGDI + A A++ TG + +GR GRPW+FR++ Sbjct: 224 HSHWDAIGELVKTVDVPVIGNGDIWEASDAMAMVGQTGCAGVEVGRGCLGRPWLFRDLAD 283 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 + L EV ++ H L + G G RKH++WYL+ + R Sbjct: 284 AFAGRDTTTLPTLGEVCAMIRRHAELLVKYQG-MHGLVDMRKHMAWYLKGFPVGGETRHV 342 Query: 300 FNAIEDASEQLEAL 313 I E L Sbjct: 343 LGQISSFDELDSLL 356 >UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI000058804E Length = 655 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 8/276 (2%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 AP+ + + PFR +C ++GA +T EM + + I VQ+ G Sbjct: 287 APLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQGQSSEWALLRRHPSEDIFGVQLCGG 346 Query: 75 DPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD 133 P M A + + IDIN+GCP V K AGS L+ + I+ + + +D Sbjct: 347 FPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVRGMSSVLD 406 Query: 134 VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 +P+T+K+RTG ++ +I + D G +T+HGRTR ++ A++D ++ Q Sbjct: 407 IPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTVHGRTREQRYSKLADWDYLKDCVQAA 466 Query: 194 S-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 P I NGDI + + +GA MI R A +PWIF EI+ + Sbjct: 467 DPHPFIGNGDILSYEDSNFFREQSGATGQMIARGALIKPWIFTEIKEQRHWD-----ISS 521 Query: 253 AEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 +E +L ++ +G ++G R R+ + +L Sbjct: 522 SERFDILQDYINLGLLHWGSDSEGVRKTRRFLLEWL 557 >UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=2 Tax=Eumetazoa RepID=UPI000186DAF4 Length = 557 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 75/287 (26%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + + +L +P+ + + PFR +C E GA +T SEM + + + + Sbjct: 204 KINWKEKLYLSPLTTLGNLPFRRICKEFGADITCSEMAMATSLLQGLKYEWALIKRHESE 263 Query: 65 GIRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + +Q+ G++P M A++ E + IDIN+GCP V +K GS LL+ V++S Sbjct: 264 DLFGIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGLLRREKVLES 323 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 ++ + + +P+T+K RTG + + + D G+ +T+HGR+R + A++ Sbjct: 324 VIKSMSKVMSLPLTVKTRTGVYADKNVAHRLIPMFVDSGVSLITVHGRSREQRYTRTADW 383 Query: 184 DSIRAV-KQKVSIPVIANGDITDPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQHYL 241 + I K IPV NGD+ L + +M+GR A +PWIF+EI+ Sbjct: 384 NYINECGKAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVGRGALYKPWIFKEIKEQK 443 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + + +E ++ V D +G G + RK +L Sbjct: 444 NWD-----ISSSERFDIIKKFVNYGLDHWGSDTMGVELTRKFTLEWL 485 >UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dictyostelium discoideum RepID=DUS3L_DICDI Length = 671 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 78/284 (27%), Positives = 130/284 (45%), Gaps = 7/284 (2%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 N+LI AP+ + + PFR +C +GA +T+ EM + + + + Sbjct: 320 INFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELALLKRHPCED 379 Query: 66 IRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 VQI GS A E A +DIN GCP V AG+AL++ P V+ + Sbjct: 380 KFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVEQL 439 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 L + +++ P T+KIR G + + ++ + G A+T+HGR+RA ++ A +D Sbjct: 440 LRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLANWD 499 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 ++ + SIP+I NGDI + + D + ++MI R A +PWIF EI+ + Sbjct: 500 YVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIKPWIFTEIKEKREWD 559 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E + D +G G RK + +L Sbjct: 560 -----ISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWL 598 >UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C170_DESAD Length = 323 Score = 292 bits (749), Expect = 9e-78, Method: Composition-based stats. Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 2/308 (0%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 ++ AP+AG +D PFR LC + G + +EM+S ++ ++ + E Sbjct: 8 PDKPWLAPLAGYSDLPFRMLCRKRGCAVACTEMVSVKGLKYDGKGTKALLATCPEDNPLV 67 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ+ G +P++ +D ++ G D+N GCP KKV + GSAL PD + + + Sbjct: 68 VQLFGGEPQDYSDTMPQLIDEGYSFFDLNSGCPVKKVLKTGGGSALHLDPDRLVETASAM 127 Query: 129 VNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 V V +KIR G+ N EIA+ ED G+ LT+H R +F+G+A++ + Sbjct: 128 VRVAGEGKVGVKIRLGFMNGEDNFLEIAKRLEDTGVAWLTMHPRYAKQMFSGQADWSKLA 187 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 +KQ VSIPVI +GD+ + TG D +M R A P IF LD + Sbjct: 188 VLKQNVSIPVIGSGDLFTAEDGMECIKQTGIDGIMFARGALFDPEIFARYLKLLDDPKCA 247 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 P ++ + + H+ DF G + +R R + Y + R A ED Sbjct: 248 TLPPF-DLGKTMEEHINMTRDFDGSNRSFRKIRSILPRYAKGMDGIRSIRTKLTACEDWE 306 Query: 308 EQLEALEA 315 E LEA Sbjct: 307 ELLEAARE 314 >UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacteraceae RepID=D1AZV6_SULD5 Length = 312 Score = 292 bits (749), Expect = 9e-78, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 11/310 (3%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 L AP+AG TD PFR++ + GA +T SEM+S+N ++S+K+ + VQI Sbjct: 12 LALAPLAGFTDLPFRSVVKKFGADVTFSEMISANALRFKSEKTFKMLTKSPLEIPYIVQI 71 Query: 72 AGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 GSD + +A I + G ID+N GCP K+ + AGS+LL D ++ ++ + Sbjct: 72 VGSDLTSIKEAVLILNDMEGIAGIDLNCGCPVPKMVAQEAGSSLLLNLDHMQRVIETIKT 131 Query: 131 AVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 + T K+R G+ + IA+ E+ G +++HGRTR+ + E +Y +I Sbjct: 132 YSNKRYTSAKVRLGFNTKIPEL--IAKACENAGADFMSMHGRTRSGAYKAEVDYQAIAEA 189 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 + V IPVIANGDIT KA V+ TG LMIGR A G PWIF ++++ L E Sbjct: 190 RAAVKIPVIANGDITSLEKALHVMSVTGCKNLMIGRGALGNPWIFYQLKNGLHHVEKT-- 247 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 ++ ++ H + +FYG KG I RKH+ Y + +FR N IED Sbjct: 248 ----KILEIVLEHYDAMVEFYGE-KGVSIFRKHLHTYSKGFREASEFRDKINRIEDKVLM 302 Query: 310 LEALEAYFEN 319 EA+ +F Sbjct: 303 REAIAHFFAQ 312 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 108/320 (33%), Positives = 172/320 (53%), Gaps = 6/320 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 MR+G+ L L+ AP+A +T+ FR +C + GA L +EM+SS+ V+ + S +R + Sbjct: 1 MRLGRVDLPGNLLLAPLAEVTNLAFRLMCKKYGASLCFTEMISSDAVVYGNASSAMRGIT 60 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPD 119 DE +Q+ G+ P+ + +AA + + +IDIN+GCPA + GSALL+ P+ Sbjct: 61 CDEERPFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPE 120 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 +V I + + VD PVT KIR ++A ED G+ A+T+HGRT ++G Sbjct: 121 LVSDIFSTLCEGVDTPVTAKIR--VLESRAATLDMAHRLEDAGVCAITVHGRTCEQGYSG 178 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ + +K+++SIPVI NGDI D + A VL+YTG D LMIGRAA G P +F I Sbjct: 179 TADHSYAKLIKEELSIPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGDPHVFHRISR 238 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 YLD GE++ + + L ++ L F + + HV W+ + + + R Sbjct: 239 YLDDGEVI-GCGCEQKRDDLLEYLDLLEKF--DLSSHINLKAHVQWFTRGLKGSRRMRSD 295 Query: 300 FNAIEDASEQLEALEAYFEN 319 + +E ++ E Sbjct: 296 IGYADSRDSIVEFVKNMCEK 315 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 109/319 (34%), Positives = 164/319 (51%), Gaps = 4/319 (1%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHI 61 IG+ Q+ +R AP+AG T RPFR E+G GL ++++ + + + S+ + Sbjct: 42 IGRRQIPSRYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAVKLLSNNAFSQQLIATS 101 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 +VQ+ G+DP +A AAR + G + +D+NMGCP KVN + G+ L+ P Sbjct: 102 LLDQPLSVQLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDPTGA 161 Query: 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 ++ VV +V +PVT+K+R GW + + +A+ E+ G A+TIHGRTRA F+G+ Sbjct: 162 TRLVALVVASVSIPVTVKMRLGWDAQSLSAPLLARQFEEVGAAAITIHGRTRAQGFSGKV 221 Query: 182 EYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + I A V SIPVI NGD+ A ++ TG A+ IGR A PWIFR++ + Sbjct: 222 SREGIAATVAAVQSIPVIGNGDVRTVEDAISMRRETGCAAVAIGRGAMLDPWIFRKLHDF 281 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 TG+ P P E + L H RE+ D +G + R+ RK WY Sbjct: 282 EMTGQYAEPGP-EEQIQFLVTHFREMVDLFGE-QATRLFRKFAGWYGARLGIPQDLEDRL 339 Query: 301 NAIEDASEQLEALEAYFEN 319 +E SE E + E Sbjct: 340 RRVESLSEFEEIVAEIRER 358 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 83/310 (26%), Positives = 134/310 (43%), Gaps = 4/310 (1%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 AP+AG TD PFR LC E GA + +EM+S ++ S + + VQ+ Sbjct: 20 WLAPLAGFTDLPFRLLCRENGARVAHTEMISVKGLIYNSQGTWDLLATAPADTPLVVQLF 79 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G+DP A R E G ID+N GCP +KV + AG+AL++ P + I+ + A Sbjct: 80 GADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIMQTIGRAA 139 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 V +K+R + G+ +T+H RT + G A++ ++ + + Sbjct: 140 PVQAGVKLRLPADGSTDGLLRLRDTLARAGVSWITLHPRTARQGYGGLAQWSALSRMAES 199 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 +P++A+GD+ + AR + TG D +M R A P IF + L TG P Sbjct: 200 SPVPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIF---KADLATGAEEDPCTD 256 Query: 253 AEVKRLLCAHVRELHDFYGPAKG-YRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 L +L Y P++ R + Y++ Q R+ A +D + Sbjct: 257 TASIAALVRRHGQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQARKGIIACQDWEAFEQ 316 Query: 312 ALEAYFENFA 321 + E A Sbjct: 317 YADQLEEALA 326 >UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Y9_ATOPD Length = 363 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 95/314 (30%), Positives = 148/314 (47%), Gaps = 7/314 (2%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 N ++ APMAG++D +RT+ GAGL SEM+S + +K+ + + V Sbjct: 37 NPVLMAPMAGVSDGVYRTMARAGGAGLAYSEMVSVAGIHFGGEKTWELVEPLSTEPDIAV 96 Query: 70 QIAGSDPKEMADAARINVES---GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 Q+ GS P++ +AA E +IDINM CP KV +K GSALL P++ +++ Sbjct: 97 QLFGSKPEQFKEAAAQISERLGNKLALIDINMACPVPKVVKKGEGSALLDTPELAANLVK 156 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 ++ V VPVT+KIR G + E A+ E G A+ +HGR ++ G+AE++++ Sbjct: 157 ACLSEVTVPVTVKIRRGRRQDEEVAPEFARAMEAAGASAIAVHGRFATQMYRGQAEWETV 216 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 V VSIPVI +GD+ L TG A+MI R G PWIF+ Q L+ Sbjct: 217 NRVCDAVSIPVIGSGDMLSAEDVAHALKETGVTAVMIARGTYGNPWIFKNTQALLEGKTP 276 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P V ++L + + + AR +WY + +R A Sbjct: 277 FVPS----VDQMLASFMMHVKLLDAAHIHIARARSLSTWYFRGIPNAAYWRGKSVRCVTA 332 Query: 307 SEQLEALEAYFENF 320 + ++ E Sbjct: 333 QDFIDLALEIKETV 346 >UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCCF0E Length = 429 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 111/366 (30%), Positives = 164/366 (44%), Gaps = 53/366 (14%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYE----------------------------- 31 +R+G + ++ APMAG+T+ FR LC E Sbjct: 10 LRLGDLTVDVPVVLAPMAGVTNAAFRQLCAEQGALRGSQARTSGQALRGSQARTSGQALR 69 Query: 32 -------------------MGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 AGL V EM++S V S + +R+VQ+ Sbjct: 70 GSQARTSGQALRGSQARTSGQAGLYVCEMITSRGVVEGDRTSLGMLTFAPNERVRSVQLY 129 Query: 73 GSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G DP + A I + G +D+N GCP KV RK G+AL ++ ILTE V A Sbjct: 130 GIDPATVGRAVAILCGDHGVDHVDLNFGCPVPKVTRKGGGAALPWKATLLGRILTEAVAA 189 Query: 132 V---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 VPVT+K R G +H + +AED G A+ +HGRT ++GEA++ +I A Sbjct: 190 AAPFGVPVTMKTRKGIDDDHLTYLDAGHIAEDSGCAAIALHGRTAVQHYSGEADWAAIAA 249 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 +K VSIPV+ NGD+ + A ++ TG D +++GR GRPW+FR++ E +P Sbjct: 250 LKAAVSIPVLGNGDVWEAADALRMVRETGCDGVVVGRGCLGRPWLFRDLAAAFTGEETVP 309 Query: 249 P-LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 L EV ++ H L + G +G RKHV+WYL+ R+ + + Sbjct: 310 ALPTLGEVMAIMRRHAELLGGWLGEERGCVEFRKHVAWYLKGFPAGPSVRQRLGQVSSYA 369 Query: 308 EQLEAL 313 E L Sbjct: 370 ALDELL 375 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 18/324 (5%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + + APM ++ FR +C + G L S M S +E Sbjct: 14 NVLKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEED 73 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 VQ G+DP+ + A++ + + IDIN GCP R G+ LL PD+++ I Sbjct: 74 DPMIVQFCGNDPETLVKASKFI-DDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERI 132 Query: 125 LTEVVNA-VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEA 181 ++ + + + PV+ KIR + + + + E G + +HGRT G A Sbjct: 133 ISTLSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTGPA 192 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 +++++ +K + SIP IANG I++ + L+YTGADA+M PW+F+ + Sbjct: 193 NWEALKILKSRCSIPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENPWLFQGFKTPE 252 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ---EHAPNDQFRR 298 ++ ++ + P I R H+ FR Sbjct: 253 AINNKPS------QFQIALEYLDYCILY--PPPNVGIIRTHLYRIFHTIFSLPGAHIFRD 304 Query: 299 TFNAIEDASE---QLEALEAYFEN 319 N E ++ LE ++ Sbjct: 305 EINNSHQVHEFQLFVQNLENFYNT 328 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 126/306 (41%), Positives = 170/306 (55%), Gaps = 3/306 (0%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + AP++G+TD R + GA VSEM+++ S ++RLR + VQ+A Sbjct: 31 LLAPLSGVTDLHLRRIARRCGASAVVSEMVAAEDLARGSAEARLR-AEGEGVRPHVVQLA 89 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G DP+ MA+ AR+ +GA +ID+NMGCPAKKV AGSAL++ D +L V AV Sbjct: 90 GCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLLAAVREAV 149 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 VPVT+K+R GW RN ++A+ AE G+ A+T+HGRTR + G A++ +IRAV + Sbjct: 150 AVPVTVKMRLGWDDASRNAPDLARRAEALGLSAVTVHGRTRQQFYAGRADWAAIRAVVEA 209 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 VSIPV+ANGD+ +ARA L +GA A+MIGRAA GRPW+ + L G P L Sbjct: 210 VSIPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVAAGLR-GAPAPALTR 268 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP-NDQFRRTFNAIEDASEQLE 311 A L H L YG A G R ARKH++ Y R D +E L Sbjct: 269 AAQADLAGEHYEGLLALYGVAMGVRHARKHLAAYADHAGGLAAGERARLVTTTDPAEALA 328 Query: 312 ALEAYF 317 L F Sbjct: 329 LLRRAF 334 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 95/312 (30%), Positives = 155/312 (49%), Gaps = 9/312 (2%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 ++ ++ APMAG+TD FR + + T +EM+S + +++ L++ + Sbjct: 1 MKLKIYTAPMAGVTDYTFRKIIEDFKPDFTFTEMVSVDKLLYKEVPKILKLRENN----- 55 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQI G D M AA+ G + I++N GCP KK+ GSAL++ P ++ ILT Sbjct: 56 IVQIFGKDIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKIEEILTA 115 Query: 128 VVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + +D ++LKIR G+ N EIA++AE + IHGRTR ++GEA++ Sbjct: 116 LREVLDPKTALSLKIRVGYDK-PENYLEIAKIAEKLKCSNIIIHGRTREQKYSGEADWKY 174 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I+ VK V+I VI NGDI D A + T D +M+ R G PW+ +I+ + GE Sbjct: 175 IKEVKDNVNIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNPWLISQIKELFEFGE 234 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 + + + + HV+E + RK++ WY++ D+ + N + Sbjct: 235 IKTIVRDIDRINMAIRHVKEY-AIDNENVFFPDIRKYIIWYIENIKGIDETKNLINQSFE 293 Query: 306 ASEQLEALEAYF 317 E +E LE Sbjct: 294 YDEIIELLEKIR 305 >UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=Rhodobacterales RepID=A3VWV8_9RHOB Length = 339 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 127/317 (40%), Positives = 173/317 (54%), Gaps = 4/317 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I Q+ + APMAGITD PFRT+ GAGL VSEM++S V +R + Sbjct: 2 LKIADRQIATPVFLAPMAGITDLPFRTVVAGFGAGLVVSEMVASQEMVQAKPSARGKAEL 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA----LLQ 116 +VQ+AG DP MA+AAR+ + GA+IIDINMGCPAKKV A L++ Sbjct: 62 GFGIENTSVQLAGCDPHWMAEAARVVADHGARIIDINMGCPAKKVVSAAGAGASGSALMR 121 Query: 117 YPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 D ++ VV AVDVPVTLK R GW N E+A+ AE G+ +T+HGRTR Sbjct: 122 DLDHALRLIEAVVGAVDVPVTLKTRLGWDEGCSNAAELAKRAEAAGVAMITVHGRTRCQF 181 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + G A++ I + Q V+IPVIANGDI A + + A +MIGR A+GRPW+ E Sbjct: 182 YRGAADWAMISDIAQAVNIPVIANGDIVGVASACRAMAQSNAAGVMIGRGARGRPWLLAE 241 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 + + G A + L+ H + FYG G R+ARKH+ WY++ + + Sbjct: 242 VAAAMGHGTAPEVPRGAVLADLVAGHYEAMLGFYGRDLGLRVARKHLGWYMEAAGSDPEM 301 Query: 297 RRTFNAIEDASEQLEAL 313 RR + AS L L Sbjct: 302 RRAVLTADQASVVLGLL 318 >UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coelomata RepID=DUS3L_HUMAN Length = 650 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 9/285 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 +R +L AP+ + PFR +C GA +T EM + + Sbjct: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCED 360 Query: 66 IRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQ+ G+ P M A + + +DIN+GCP V +K G AL+ + I Sbjct: 361 IFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQI 420 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + +DVP+T+KIRTG + D G+ +T+HGR+R + A++ Sbjct: 421 VRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQ 480 Query: 185 SIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 I Q +P+ NGDI A + TG +MI R A +PW+F EI+ Sbjct: 481 YIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHW 539 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + +G +G R+ + +L Sbjct: 540 D-----ISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWL 579 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 102/319 (31%), Positives = 164/319 (51%), Gaps = 13/319 (4%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV------WESDKSRL-RMV 59 + +R APMAG++D R C +MGAGL V+E S + + E+ K+ + Sbjct: 4 KFSSRAFLAPMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEEQLKENMKTIQEFIE 63 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 ++ +VQ+ GSD + AA I VE IID NMGCPA + +++AG ALLQ + Sbjct: 64 FSEQERPISVQLFGSDLYALEKAATI-VEPYFDIIDYNMGCPAPHITQQMAGGALLQEVN 122 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRN-CEEIAQLAEDCGIQALTIHGRTRACLFN 178 + + I +VNAV PVTLKIR+G + +IA++AED GIQ +T H RT + ++ Sbjct: 123 LTQQIFETLVNAVKKPVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPRTVSQGYS 182 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 G A++ I+ +K+ +IPV+ NGDIT P A+ +LD TG D +MIGR A G P++F +I Sbjct: 183 GSADWKLIKELKEISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGRGAMGNPFLFEQIN 242 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 YL TG + ++ + + + + + + + R Sbjct: 243 DYLKTGSYKEY-SFKDRLDSFFDYLHLTNQYK---IKFSNIKSQAMRFTKGLKGGSKLRS 298 Query: 299 TFNAIEDASEQLEALEAYF 317 ++ + + + + Sbjct: 299 KITFSKNLEDLEKIMREAY 317 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 156/316 (49%), Gaps = 10/316 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +R+G + + +PMAGI+D P+R + G+ + +E +S+ + KS Sbjct: 2 VRVGNVIIEGDVALSPMAGISDSPYRQITKRFGSAFSYTEFVSTEQLKLGNAKSLDMFRF 61 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++ QI GSD + +A+ I E IID+NMGC KV+ +G+ LL+ + Sbjct: 62 VEMERPIVFQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNIRL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ + N ++PVT KIR GW N E ++ ED G+ A+++HGRT+A + G Sbjct: 122 AGKMIEGIRNRTNLPVTAKIRLGWDANSLNYLETLKVLEDSGVSAISVHGRTKAMAYTGI 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++++I +K + ++P+ NGD+ +A G D ++IGR A G PW+F + Sbjct: 182 ADWNAIGEIKSRANVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRKAIGNPWVFGKTPKQ 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYG--PAKGYRIARKHVSWYLQEHAPNDQFRR 298 P ++K ++ H+ + +FY + RKH Y++ + +R Sbjct: 242 FF--------PWYQIKDVILEHLDLMLNFYPTSDDYALILFRKHFIKYIENIGFPEDTKR 293 Query: 299 TFNAIEDASEQLEALE 314 ++ +E + LE Sbjct: 294 LLLSVASVNEFKDTLE 309 >UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE39_9ACTO Length = 411 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 114/361 (31%), Positives = 161/361 (44%), Gaps = 61/361 (16%) Query: 17 MAGITDRPFRTLCYEM-------------------------------------------- 32 MAG+TD PFR LC M Sbjct: 1 MAGVTDVPFRRLCRIMGESGLPDHLRPVGIPSWAAESGEGATASSPKAPGESSNEPRHVT 60 Query: 33 ------GAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARIN 86 AGL V+EM++S V E++++ + +R++Q+ G +P MA AA + Sbjct: 61 IPRVDAPAGLYVTEMVTSRALVEENERTLEMVRPDPAERVRSLQLYGVNPAVMAKAATML 120 Query: 87 VESGA-QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD---------VPV 136 VE ID+N GCP KV +K G+AL D+ ++ VV A D +PV Sbjct: 121 VERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRACDEAGERAGREIPV 180 Query: 137 TLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIP 196 T+KIR G EH + A A+ G ALT+H RT+ + G A +D I +K + IP Sbjct: 181 TVKIRIGIDSEHETATDAALNAQKLGAAALTLHARTQNQHYAGHAHWDEIARLKDLLDIP 240 Query: 197 VIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVK 256 V NGD+ + A A+L+ TG D + +GR AQGRPWIFR+I G + P LAEV Sbjct: 241 VFGNGDVFEAADALAMLEQTGCDGISVGRGAQGRPWIFRDIVAAYHGGSIPPGPSLAEVV 300 Query: 257 RLLCAHVR-ELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEA 315 ++ H + D + R RKH+ WYL+ A R + + E E L Sbjct: 301 SVIECHAAWCVVDQGDEERALREMRKHIGWYLRGFAVGGPQRHALSMVSTLQELHERLAD 360 Query: 316 Y 316 Sbjct: 361 L 361 >UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=C7LQM9_DESBD Length = 324 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 2/306 (0%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 + AP+AG +D PFR LC+E G V+EM+S+ +++S + + D+ VQ Sbjct: 12 KPWLAPLAGFSDLPFRLLCHEYGCHAAVTEMVSAKGLIYDSPGTNELLQTCDQDSPLVVQ 71 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + GS+ + + ++G + D+N GCP +KV + +G+ALL+ P+ + I +++ Sbjct: 72 LFGSEEPFLVQSIERLRKAGFRYFDLNCGCPVRKVIKTGSGAALLKEPENLLKIAKSMID 131 Query: 131 AVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 A + KIR GW ++A E+ G +T+H R A F G A++ ++ + Sbjct: 132 AAEPGCMGFKIRLGWYVGQPVYLQVATKLEELGAGWVTMHPRFGAQGFTGHADWSHLKTL 191 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 K++V++PVIA+GD+ A ++ T D++M R A P IF E P Sbjct: 192 KERVTLPVIASGDLFHAEDAIKCIEQTSVDSIMFARGALNDPSIFTRYLQLRRH-EEPPA 250 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 +++ ++ G R V +L+ RR + E Sbjct: 251 KSWQQMEDMVRRLSELYPQHGMDRLGLLKMRTLVPRFLKGLPGARALRRDIVFCKSWDEV 310 Query: 310 LEALEA 315 L+ Sbjct: 311 FAILQT 316 >UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovibrionaceae RepID=A1VHK2_DESVV Length = 449 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 2/309 (0%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 AP+AG +D FR LC + GA + +EM+S+ ++ S +R + E VQ+ Sbjct: 35 WLAPLAGYSDLSFRLLCRKAGAAVCCTEMVSAKGLIYYSPGTRDLLATTPEDAPLVVQLF 94 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV-VNA 131 G DP M A +E G + D+NMGC KV + G+A+L+ ++ + A Sbjct: 95 GCDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVARAMLRTA 154 Query: 132 VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 V K R GW ++ + D G +T+H R F+GEA + ++ + + Sbjct: 155 GAGRVGFKFRLGWDVGQEVWADLGRALADLGAGWVTLHPRYARQGFSGEARWSTLGELVR 214 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 VS+PVIA+GD+ L TG ++M R A P +F + + G P Sbjct: 215 AVSVPVIASGDLFTAADGVRCLRETGVASVMYARGALNDPGVFHAHRERVA-GRPDPGYT 273 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 ++ L+ H + R V Y++ R+ + + E Sbjct: 274 PQRLRALITRHAELARQYAPGRSALLKMRTFVPRYVRHLPGARALRQHLASCFEWEMLDE 333 Query: 312 ALEAYFENF 320 L +F + Sbjct: 334 LLATFFADV 342 >UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T8_9CHLO Length = 662 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 120/288 (41%), Gaps = 11/288 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R +L AP+ + PFR +C G +T EM + + Sbjct: 301 IDFRGKLYLAPLTTTGNLPFRRICKRYGVDITCGEMAMVTNLLQGQPAEWALLRRHPSED 360 Query: 66 IRTVQIAGSDPKEMADAARINVE-----SGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 I Q+ G M+ ++ + G IDINMGCP V K AGS LL+ P Sbjct: 361 IFGAQVCGGYSDSMSRCMQLLEDEVVSKGGLDFIDINMGCPIDLVCNKGAGSMLLEKPAR 420 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ ++ + P+TLK R G+ R EI D G+ +T+HGR+R ++ Sbjct: 421 MEQLVRASAPLLSCPLTLKTRMGYFDNKRVAHEIIPKMVDWGLAGMTLHGRSRQQRYSRL 480 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A++D I + I +I NGD+ ++ G MI R A +PWIF EI+ Sbjct: 481 ADWDYINQCARASPIQLIGNGDVFSYHDYVKNVEGQGVATCMIARGALIKPWIFTEIKER 540 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 D + E +L + + +G A+G R+ + +L Sbjct: 541 RDWD-----ISATERLDMLKDYAAFGLEHWGADARGVANTRRFLLEWL 583 >UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Eukaryota RepID=B5X496_SALSA Length = 654 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 9/286 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 Q +++L AP+ + PFR +C GA +T EM + + + Sbjct: 304 QVDFKDKLYLAPLTTCGNLPFRRICKRFGADITCGEMAMCTNLLQGQSSEWALLKRHESE 363 Query: 65 GIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQ+ G P M A + +DIN GCP V +K G L+ + + Sbjct: 364 DLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGCGLMTRTNKFEQ 423 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+ + + +DVP+T+KIRTG + ++ + G+ +T+HGR+R + A++ Sbjct: 424 IIRGMNSVLDVPLTVKIRTGVQEKANIAHKLIPEMKKWGVSMITLHGRSREQRYTKSADW 483 Query: 184 DSIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 D I Q IP+ NGDI A + T +M+ R A +PW+F EI+ D Sbjct: 484 DYINTCSQLASPIPLFGNGDILSYYDAMKARE-TDVSGIMLARGALIKPWVFTEIKERRD 542 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + +G +G R + +L Sbjct: 543 WD-----ISSSERLDVLRDFTHYGLEHWGSDTQGLEKTRNFLLEWL 583 >UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine synthase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792282 Length = 578 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 141/287 (49%), Gaps = 9/287 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + +N+L AP+ + + PFR +C E GA +T SEM+ S+ + ++ + Sbjct: 226 KINWKNKLYLAPLTTVGNLPFRRICKEFGADITCSEMVLSSSLLQGHNQEWALTKRHETE 285 Query: 65 GIRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 I +Q+ G++P +A +A++ E+ +D+N+GCP ++ ++ AGS LL ++ Sbjct: 286 DIFGIQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSGLLLRSKKLEV 345 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 L + +DVP+T+K R+G + ++ + +D G+ +T+HGR+R + A++ Sbjct: 346 CLKSMRTVLDVPLTVKTRSGVNKDQNVAHDLIPMFKDSGVSLITVHGRSRDQRYTKMADW 405 Query: 184 DSIRAVKQ-KVSIPVIANGDITDPLKARA-VLDYTGADALMIGRAAQGRPWIFREIQHYL 241 + + + + V ++GDI L + MIGR A +PWIF+E++ Sbjct: 406 NYVNECAKLASPVQVFSSGDIMSYEDYVDSKLQFPDITGAMIGRGALIKPWIFKELKENC 465 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L +V+ + +G +G RK + +L Sbjct: 466 HWD-----ISSNERLEILKKYVKYGLEHWGSDTRGVETTRKFLLEWL 507 >UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Chordata RepID=DUS3L_MOUSE Length = 637 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 118/285 (41%), Gaps = 9/285 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 + +L AP+ + PFR +C GA +T EM + + Sbjct: 288 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHPCED 347 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQ+ G+ P M A + + +DIN+GCP V +K G AL+ + I Sbjct: 348 IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQI 407 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + V +DVP+T+K+RTG + D G+ +T+HGR+R + A++ Sbjct: 408 VRGVNGVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRLADWP 467 Query: 185 SIRAVKQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 I + +P+ NGDI A TG +M+ R A +PW+F EI+ Sbjct: 468 YIEQCAKVASPMPLFGNGDILSFEDA-NCAMQTGVAGIMVARGALLKPWLFTEIKEQRHW 526 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + +G +G R+ + +L Sbjct: 527 D-----ISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWL 566 >UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4K9_9DELT Length = 339 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 141/309 (45%), Gaps = 6/309 (1%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 AP+AG +D PFR L G + SEM+S + ++ ++ + E +Q+ Sbjct: 12 WLAPLAGYSDLPFRLLVKRHGCAVACSEMVSVKGMTFGNEGTQRLIATCPEDDPMVLQLF 71 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN-- 130 G+DP V+ G + D+N GCP +KV + +G L++ PD + I + +V Sbjct: 72 GADPDLFGPVMDWLVDLGYRNFDLNAGCPVRKVLKSGSGVKLMEDPDTLVRIASVMVERA 131 Query: 131 ---AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 A V +K R G+ + E+A+ ED G+ +T+H R +F G+A++ + Sbjct: 132 TAHARGGQVGVKFRLGFDKGNDTYLELARRLEDAGVHWVTLHPRYGRQMFAGQADWSKLG 191 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 +K+ VSIPV+A+GD+ ++ TG DA+M R A P IF + L G+ Sbjct: 192 LLKRAVSIPVVASGDLFTAEDGVRCVEETGVDAVMFARGALYDPAIFDRYRTLLAGGQ-P 250 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 P + R++ H+R +F G + +R R + Y + R + D Sbjct: 251 EPRSGESLARIVREHIRLTREFEGDGRSFRKIRSIIPRYAKGLRGIRALRGSLLECRDWE 310 Query: 308 EQLEALEAY 316 EA Sbjct: 311 ALEEAAATI 319 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 126/247 (51%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 ++I + L +R + PMAG TD P R L + GAG TVSEM+SS V+ K+ + Sbjct: 40 LKIREISLPHRAVFGPMAGFTDAPARRLMAQHGAGFTVSEMVSSRALVYGDHKTVSLLKA 99 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 VQI G P+ M AA + +DINMGCPA K+ AGS L+ PD Sbjct: 100 EPNGAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPDR 159 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 I+ EVV PVT+K+R GW EH E A+ E G + +H RTR ++ Sbjct: 160 CGRIVEEVVKNTSRPVTVKMRKGWDAEHVTAVECAKACEQAGAVLIAVHARTREQMYTPG 219 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + I AVK V +PV+ NGDI A +++ TG D +MI RAA G PW+F + Sbjct: 220 IDPSIIAAVKDAVHVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAALGDPWLFERVNAA 279 Query: 241 LDTGELL 247 L+ Sbjct: 280 LEGLPRP 286 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 82/315 (26%), Positives = 139/315 (44%), Gaps = 5/315 (1%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 +L APM G+T R + G L +E + + S +S + + Sbjct: 4 SFPFKLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISS-HKPSMRSLKKQIVKSGDI 62 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 +VQI G++ + MA++A++ V+ GA +D+NMGCP K+ + GSA+L+ P + +L Sbjct: 63 PLSVQIMGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVL 122 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + V ++ KIR G+ EI Q D G L +H R R + G +++ Sbjct: 123 ASMREQVPCALSAKIRAGFD-NKEGVFEILQAIVDSGADYLAVHPRRRVDHYEGHSDWRI 181 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I A+K+K IPVI NGD+ A + T D +MIGR A PWIF + L E Sbjct: 182 ISALKEKSPIPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIFLQTSQVLSDQE 241 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKG-YRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + ++ + DF +G ++ + ++ FR+ + Sbjct: 242 VF-IPNWEDIYHFYHGIAQAFSDFCDNEQGTLNKTKEMLMYFSVNLPEPAPFRKAIGRSQ 300 Query: 305 DASEQLEALEAYFEN 319 E + L ++ + Sbjct: 301 SIDEMMNKLHSFLKE 315 >UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinomycetales RepID=B8HFM3_ARTCA Length = 392 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 101/322 (31%), Positives = 169/322 (52%), Gaps = 6/322 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 +++G + +I APMAGIT+ FR LC E G G+ V+EM++S V + +S + H Sbjct: 17 LKLGPLTVDTPVILAPMAGITNSAFRRLCREYGGGMYVAEMVTSRALVERTPESLRIISH 76 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 D+ +R+VQ+ G D + A R+ VE A ID+N GCP KV R+ GSAL D Sbjct: 77 DDDEKVRSVQLYGVDAGTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKID 136 Query: 120 VVKSILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 + +I+ V ++P+T+K+R G +H + ++A D G+ A+ +HGRT A Sbjct: 137 LFTAIVQTAVREASKGNIPLTIKMRKGIDDDHLTYLDAGRIARDSGVAAVALHGRTAAQF 196 Query: 177 FNGEAEYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 ++G+A++ +I +++ IPV+ NGDI A ++ TG D +++GR QGRPW+F Sbjct: 197 YSGQADWSAIARLREALPDIPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGRPWLFG 256 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHD-FYGPAKGYRIARKHVSWYLQEHAPND 294 ++Q + ++ L +V + H + + F K R RKH++WY + + Sbjct: 257 DLQAAFEGSDVRHRPNLRQVAEGVYRHAELMVETFGDEGKALREIRKHIAWYFKGYVVGG 316 Query: 295 QFRRTFNAIEDASEQLEALEAY 316 + R + + L Sbjct: 317 ELRTRLALVTSLEVLRDTLAEL 338 >UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A55 Length = 669 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 119/286 (41%), Gaps = 10/286 (3%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 Q ++L P+ + PFR +C GA +T EM + + + Sbjct: 320 QVNFNDKLYL-PLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQQSEWALLKRHESE 378 Query: 65 GIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQI G P M A IN + +DIN GCP V +K G L+ + Sbjct: 379 DVFGVQIEGCFPDTMTRCAELINNNTEVDFVDINSGCPIDLVFKKGGGCGLMTRTRKFEE 438 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 I+ + +DVP+T+KIRTG + ++ + G+ +T+HGR+R + A++ Sbjct: 439 IVKGMNYVLDVPLTVKIRTGVQEKTNIAHKLIPEMKKWGVSMITLHGRSREQRYTKLADW 498 Query: 184 DSIRAV-KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 D I K +P+ NGDI A + TG +MI R A +PWIF EI+ Sbjct: 499 DYISTCSKLASPVPLFGNGDILSYEDAM-MAKETGVSGIMIARGALIKPWIFTEIKEKRH 557 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L + +G +G R + +L Sbjct: 558 WD-----ISSGERLDILRDFTNFGLEHWGSDTRGVEKTRSFMLEWL 598 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 135/311 (43%), Gaps = 16/311 (5%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + I APM ++ FR LC ++GA + M+ S ++ H + Sbjct: 23 SPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFEHHIQDRPLV 82 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ G+DPK + AA++ VE +D+N+GCP + GS L+ + VK+ + + Sbjct: 83 VQFCGNDPKTVLAAAKM-VEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTL 141 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSI 186 +++PVT+KIR P+ E A + ++ G LT+HGRT+ E +D I Sbjct: 142 SAGLNIPVTVKIR--VFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVNWDII 199 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 R +K++++IPVIANG I L+ TG D +M P +F + + Sbjct: 200 RRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADTNNT-----P 254 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVS-WYLQEHAPNDQFRRTFNAIED 305 E L E Y PA +I R H+ Q+ + R A + Sbjct: 255 GEDTSFLE----LARQYLECATLYPPASD-KIVRAHLFKILFQDLRVHSDLRDALAAAKS 309 Query: 306 ASEQLEALEAY 316 E +E ++ Sbjct: 310 QQEMVEIVDEL 320 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 156/313 (49%), Gaps = 14/313 (4%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 L N++ APMA TD PFR +C GA T +EM+S + + E++K + E I Sbjct: 2 LENQIGLAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLPQKGEDNI- 60 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQ+ G++ + +AA+ A IDIN CP KV +K +G+ALL+ P ++ I+ Sbjct: 61 GVQLFGNETTKFIEAAKSIQHL-ASWIDINAACPVNKVVKKGSGAALLKNPKLLGDIVFN 119 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + ++D+PV +K+R G+ N EE+A+ E G + +HGRTR+ +++G A + ++ Sbjct: 120 LKKSIDLPVGVKVRLGYD--QINIEEVAETVEKAGADYIIVHGRTRSQMYSGIANREILK 177 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 +K K++IP+ A+GD+ L GAD +++ R A G PWIF + Sbjct: 178 KLKAKITIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIFT---------KNN 228 Query: 248 PPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 + E H++ + +FYG + RK + Y + RR + + Sbjct: 229 YNPTIDERIDTCLEHLKLMIEFYGSEVYAVKKFRKVLMKYFSGIEGAKEIRRNLDLLLSY 288 Query: 307 SEQLEALEAYFEN 319 ++ E + + Sbjct: 289 NDVAEMVYKTLKR 301 >UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI99_KOSOT Length = 314 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 87/310 (28%), Positives = 149/310 (48%), Gaps = 11/310 (3%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 N + APMAG TD R + E GA SEM+S + ++ + + Sbjct: 4 NEVGLAPMAGYTDEAMRAISLEWGADFVFSEMLSVEGVLRNDRTTQKIIP----ETPCRI 59 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G+D +A AA+ ++ A DIN GCP KKV ++ AG+ALL+ P+ + +++ + Sbjct: 60 QLFGNDIARLAMAAKAVLD-KATWFDINAGCPVKKVVKRGAGAALLREPEKLNAMIQTLK 118 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 D+PV++KIR GW +I + + A+ +HGRT ++G A+++SI V Sbjct: 119 GISDLPVSVKIRLGWDKNE--VVKIVERLVESRPFAIMVHGRTVVQGYSGVADWESIGKV 176 Query: 190 KQKVS---IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + I V +GD+ P K + G D +++ R A G PWIF + + G Sbjct: 177 VKICKPHGIKVYGSGDVFSPEKIVEAFEKYGVDGVLVARGAIGNPWIFSQYKELKQKGSY 236 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P P E ++ H+++L + G + +RKH Y + + RR + +++ Sbjct: 237 TVPDP-HERLKVFAKHLKKLIELKGEERAIIESRKHFVGYCKGLLNATKMRREYMKLKNK 295 Query: 307 SEQLEALEAY 316 ++ L Y Sbjct: 296 TDVENFLMQY 305 >UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricales RepID=DUS3_COPC7 Length = 676 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 21/296 (7%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 + + AP+ + + PFR +C ++GA +T EM + + S + + Sbjct: 307 LDWKGKTYLAPLTTVGNLPFRRMCVKLGADITCGEMGLATSFLAGSKEEWSLVRRHPSEK 366 Query: 66 IRTVQIAGSDPKEMADAARINVE---SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 I +Q+AG+ P + A + + +G +D+N GCP V + +GSALL + Sbjct: 367 IFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAGSGSALLDNAGKLG 426 Query: 123 SILTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLA-EDCGIQALTIHGRTRACLFNGE 180 I+ + A+ +P+T+KIRTG N ++ + A+T+HGRTR + Sbjct: 427 KIIQGMNRALGEIPLTVKIRTGVKEGRNNAHKLMPRISAEWSASAITLHGRTRQQRYTKL 486 Query: 181 AEYDSIRAVKQKV----------SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 A++D I+ V +P+ GD ++ G D +MIGR A + Sbjct: 487 ADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINNYGVDGVMIGRGALIK 546 Query: 231 PWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSW 285 PWIF EI+ + + E +L+ +V + +G G R+++ Sbjct: 547 PWIFTEIKERREWD-----ISATERLQLIRDYVEYGLNHFGSDTAGVNTTRRYLCE 597 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 131/321 (40%), Gaps = 29/321 (9%) Query: 2 RIGQYQL------RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR 55 ++G Y+ + APM T FR LC + GA + + M S R Sbjct: 38 KLGGYEFFRNVLKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRR 97 Query: 56 LRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALL 115 E VQ G++P+ + AA+ + ID+N+GCP + R GS LL Sbjct: 98 DYWSTCPEDRPLVVQFCGNEPEWVVKAAKYIED-HCDAIDLNLGCPQQIARRGNYGSFLL 156 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC 175 P ++ I+ E+ + VP+ KIR P + ++A ++ G Q LTIHGRT+ Sbjct: 157 DKPHIILPIVQELHKHIKVPIFCKIRL--LPNLDDTIKLALQLQEAGCQLLTIHGRTKEQ 214 Query: 176 LF--NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 +G A + +IR +++++SIPVIANG + L+ TGAD +M P Sbjct: 215 KGHNSGIANWKAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSF 274 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAP 292 F ++ + ++ ++ + + R H+ L+E Sbjct: 275 FSGLKVP--------------IYQVAREYIDFTEIYKT---SIHVTRSHIFKMLKEKLDV 317 Query: 293 NDQFRRTFNAIEDASEQLEAL 313 R T A + + Sbjct: 318 YSDLRETMGATHTNDGFRDII 338 >UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamiellales RepID=Q010A0_OSTTA Length = 639 Score = 279 bits (714), Expect = 9e-74, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 12/290 (4%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + + ++ AP+ + + PFR +C ++GA +TVSEM ++ + K + Sbjct: 264 SLEFKGKIYVAPLTTVGNLPFRRICTDLGADITVSEMAMASNLLKGDRKEWALVRRHPIE 323 Query: 65 GIRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +QI G P M A + E ID+NMGCP V K AG +L++ D +K Sbjct: 324 KCFGIQICGGYPDLMTRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDTDRLKR 383 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHR--NCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 ++ + + PVT+K+R G+ + +I A+ G A T+HGRTR ++ A Sbjct: 384 VVRSMTSVSSTPVTIKLRMGYFDDPSRYVAHDIISKAKSWGAYAATLHGRTREQRYSRLA 443 Query: 182 EYDSIRAVKQKV---SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ I ++P+I NGD+ + MIGR A +PW+ EI+ Sbjct: 444 DWSYIHRCADASALNNLPLIGNGDVYTYQDWNEQIANEKISTCMIGRGAIIKPWLMTEIK 503 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E L V + +G + G R+++ ++ Sbjct: 504 EQRHWD-----ISANERLDLFKDFVHYGLEHWGSDSVGVEKTRRYLLEWM 548 >UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4RQU5_OSTLU Length = 608 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 127/285 (44%), Gaps = 8/285 (2%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 +++L AP+ + + PFR +C +GA +T EM + + Sbjct: 243 IDFKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGLPSEWALLRRHKSED 302 Query: 66 IRTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQI G P + ++ ++ IDINMGCP V +K GS +L+ P ++++ Sbjct: 303 IFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKPKKMETV 362 Query: 125 LTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 + A+ +T K R + + R A + G A+T+HGRTRA + A++ Sbjct: 363 IRAASAALGKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGRTRAQRYRSVADW 422 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 + + K+ S+P+I NGD+ L+ D M+ R A +PW+F EI+ D Sbjct: 423 EYTKLTKESSSVPLIGNGDVYMQKDYYTHLEEHSVDTCMLARGALIKPWLFTEIKERRDW 482 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L + + +G +G RK++ ++ Sbjct: 483 D-----ISSRERFDILKSFASFGLEHWGSDTRGVESTRKYLLEWM 522 >UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=Deltaproteobacteria RepID=Q30WR3_DESDG Length = 376 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 93/319 (29%), Positives = 139/319 (43%), Gaps = 9/319 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG + RL APMAG+ +R + G GL + M S+ E+ Sbjct: 48 LQIGGRTVNGRLFLAPMAGLGHIAYRQVLESFGGCGLVFTGMCSARAVPTENPARSPVFS 107 Query: 60 HIDEPGI-RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 E Q+ G+DP++MA AAR G +DINMGC + +K G+ LL+ P Sbjct: 108 WRPEELPALVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLLRDP 167 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AV VPV +K+RTGW+P+ +A+ +D G AL H R Sbjct: 168 ERAVRMVDAVRRAVSVPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPRVAPDRRT 227 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 I VK V IPVI NGD+ D A+L+ TG D + +GR A RPWIF + Sbjct: 228 HRPRTAHIGLVKDAVDIPVIGNGDVFDAADCAAMLERTGCDGVSLGRLAIARPWIFAQWT 287 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 + L A + L Y PA+ ++ +K + +Y ++ Sbjct: 288 RGFV-------PEKQTYRDTLFALMDALEAHYDPARAIKLYKKLIMYYAANFTFGNRLFG 340 Query: 299 TFNAIEDASEQLEALEAYF 317 +D +A F Sbjct: 341 RLIRGDDMQAMRRNAQAEF 359 >UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C5_9ACTN Length = 390 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 99/344 (28%), Positives = 148/344 (43%), Gaps = 37/344 (10%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 +AAPMAG+T+ +R + GA SEM+S ++ +R + VQ Sbjct: 36 PFLAAPMAGVTNSAYRIMNRLGGAQYAYSEMVSVAGLCMKNQATRELCLPHTAEPNLIVQ 95 Query: 71 IAGSDPKEMADAARINVESGAQ---IIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 + GSDP + A + E IDINM CP KV ++ GSAL+ P +++ Sbjct: 96 LFGSDPVQFQRACALVGELLGDKLSCIDINMACPVPKVTKRGEGSALMCDPHRACALVRA 155 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + V VPVT KIR G+ +H + E + +D G AL +HGR L+ GEA ++SI+ Sbjct: 156 CLREVRVPVTCKIRRGYYMDHESAAEFGRALQDAGASALAVHGRFAKQLYKGEANWESIK 215 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE----------- 236 V + V IPVIA+GD+ A +L T A A++I R G PWIF + Sbjct: 216 RVVEAVDIPVIASGDVMSAEDACRILYKTQAHAVLIARGTYGNPWIFDDALKIFNKKKLL 275 Query: 237 --------------------IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY 276 + + + ++ L H+R L + Sbjct: 276 LKGNPSDLSALLDAGLYNSSAREHNRHAHITDTHSISARLNALELHLRLLAATHA---HM 332 Query: 277 RIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 AR SWYL + +R+ F E L L+A+ E Sbjct: 333 ARARSLCSWYLYGLSHAALWRQKFMTATTLDEFLHLLQAFKEQV 376 >UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=Schistosoma mansoni RepID=C4QMR1_SCHMA Length = 441 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 124/310 (40%), Gaps = 23/310 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + + APM ++ +R L + G LT + M++S + R + E Sbjct: 9 SPKYVLAPMVDGSELAWRMLGRKYGVQLTFTPMINSTAFLINMKYRRSCLQFASEDRPLI 68 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ + P A+ V+ +D+N+GCP R G+ L + +K I++ Sbjct: 69 VQFCANSPDTFVRCAK-LVQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKEIIS-- 125 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC--LFNGEAEYDSI 186 ++++ V + + + + A+L E G LT+HGRTR G A+++ I Sbjct: 126 RASLELNVPVTCKIRIFSDVERTVQYAKLLEAAGASMLTVHGRTREMKGQKTGLADWNQI 185 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 RAVK+ V IPVIANG+I LD T ADA+M P +F IQ Sbjct: 186 RAVKEAVKIPVIANGNIQYLSDVHQCLDSTKADAVMSAEGHLHNPALFLGIQPC------ 239 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIED 305 + + ++ + + +I R H+ + ++R + Sbjct: 240 --------IYDMCFEYLDLVEKY---PTSMQIIRGHIFKLCHHALDEHSEYRSLIGTSQS 288 Query: 306 ASEQLEALEA 315 E L+ Sbjct: 289 TKGIKEILQK 298 >UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=Epsilonproteobacteria RepID=DUS_HELPJ Length = 328 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 101/319 (31%), Positives = 155/319 (48%), Gaps = 14/319 (4%) Query: 6 YQLRNR--LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE 63 +N+ L AP+AG TD PFR++ + G +T SEM+SS+ V+ DK+ + Sbjct: 1 MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPL 60 Query: 64 PGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 QI+GS + +A ID N GCPA KV GS LL+ + + Sbjct: 61 EDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLV 120 Query: 123 SILTEVVNAVDVPVT-LKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG-E 180 IL + + +T +K+R G+ + EIA D + + +HGRTR+ + + Sbjct: 121 EILKVIRENTNKKITSVKVRLGFEKKIPK--EIAHALNDAPVDYVVVHGRTRSDRYQKDK 178 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +Y+SI +K+ + PVIANG+I KA VL T AD LMIGRA PWIF +I++ Sbjct: 179 IDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNN 238 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 LP K L+ H ++ +FYG +G + RK++ Y + FR Sbjct: 239 ------TTELPAVVKKDLVLEHFDKMVEFYGD-RGVIMFRKNLHAYAKGEMQASAFRNCV 291 Query: 301 NAIEDASEQLEALEAYFEN 319 N + + E++E +F Sbjct: 292 NTLTEIKSMRESIEEFFNQ 310 >UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteobacteria RepID=B8GW86_CAUCN Length = 335 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 174/323 (53%), Gaps = 8/323 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG ++ R+ APM G++D PFR +GA +EM++S R Sbjct: 5 LDIGGVEVPGRVWIAPMTGVSDLPFRETASALGAPYVATEMVASAEFAKGRPDVVRRAAV 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLA-GSALLQYPD 119 + + +Q+ G D MA AR+ E+GA+IID+N GCPAK+V A GSAL++ PD Sbjct: 65 GEGLPLTVIQLVGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREPD 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + ++++ V AVDVPVT+K+R GW + N +IA+ AE G +A+T+HGRTR + G Sbjct: 125 LAEALVAAAVEAVDVPVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVHGRTRNQFYKG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ ++ AVKQ VS+PV+ NGDI D AR L+ +GAD +MIGR GRPWI I+ Sbjct: 185 VADWTAVAAVKQAVSVPVLVNGDIVDGETARQALEQSGADGVMIGRGVYGRPWIAGAIEA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA------PN 293 L+ G E + H R FYG G ++ RKH++ Y++ Sbjct: 245 ALE-GRGFQEPEAEERLAIAITHFRRSLSFYGERLGLKMFRKHLASYIEAAPWPETAEAR 303 Query: 294 DQFRRTFNAIEDASEQLEALEAY 316 R + +ED + AL Sbjct: 304 RAARASLCRLEDPAAVESALRTL 326 >UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera RepID=Q17M24_AEDAE Length = 578 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 12/289 (4%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + +++L +P+ + + PFR +C E G +T EM S P + + Sbjct: 224 KINFKDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACSVPIINGMMQEWALTKRHPSE 283 Query: 65 GIRTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQI G + K ++ A + I + +D+N+GCP + + GSALL+ ++++ Sbjct: 284 DLFGVQICGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRRNILEV 343 Query: 124 ILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 ++ + D T+K R G E+ E+ G +TIHGRT+ + + Sbjct: 344 MIQSCSRILADYDKEFTVKTRMGIYANKYVAHELVPKFEEWGASLVTIHGRTKEQRYTKK 403 Query: 181 AEYDSIRAVK-QKVSIPVIANGDITDPLKARAVLDY-TGADALMIGRAAQGRPWIFREIQ 238 A++D IR Q SIP+ NGDI + +M+GR A +PW+F+EI+ Sbjct: 404 ADWDYIRQCAQQAKSIPIYGNGDIFCYQDYLDAKERAPELAGVMVGRGALIKPWVFQEIK 463 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWY 286 + +E +L +V + +G KG R+ + + Sbjct: 464 EQKNLD-----PSSSERMDMLKRYVNYGLEHWGSDTKGVENTRRFLLEW 507 >UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota RepID=Q7PVV7_ANOGA Length = 599 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 126/288 (43%), Gaps = 12/288 (4%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R++L +P+ + + PFR +C E G +T EM + P + + + Sbjct: 246 IVFRDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACAIPIINGAIQEWALTKRHSSED 305 Query: 66 IRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + VQ+ G +PK + AA+I E + ID+N GCP + + GSALL+ +V+K + Sbjct: 306 LFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALLRRQNVLKVM 365 Query: 125 LTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + + T+K R G E+ ED G +TIHGRT+ + A Sbjct: 366 VQSCSRLLADYGKEFTVKTRIGIYNNKLIAHEMVPKFEDWGASLITIHGRTKEQRYTKRA 425 Query: 182 EYDSIRAVK-QKVSIPVIANGDITDPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQH 239 +++ ++ Q S+PV NGDI + +M+GR A +PW+F+EI+ Sbjct: 426 DWEYLQQCATQAQSVPVFGNGDIFGYEDYEHIRTKCPNIAGVMVGRGALIKPWVFQEIKE 485 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWY 286 E +L +V + +G KG R+ + + Sbjct: 486 RKTLD-----PSSGERFEMLKRYVNYGLEHWGSDTKGVETTRRFLLEW 528 >UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES4_ELUMP Length = 318 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 164/317 (51%), Gaps = 6/317 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG + +N L+ APMAGITD PFR C GAG+ +EM+S+ +++ KS + Sbjct: 8 ITIGSFAAKNNLMLAPMAGITDTPFRIHCLNNGAGIVCAEMVSAKAVEYDNKKSVKMLAV 67 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + ++QI G D + ++ AA+ +GA IIDIN GCP KK+NR AG L++ + Sbjct: 68 DKKEHPVSMQIFGGDAESISIAAKAAEAAGADIIDINAGCPVKKINRAGAGCVLIKDEKL 127 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 + SI+ VN+V +PVTLK R G ++IA+LAE+ G A+ +H R + G Sbjct: 128 LASIVNAAVNSVSIPVTLKTRIGLTAGDFKGDKIAKLAENEGAAAVIMHARYAGNVHGGP 187 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 A+ +++ V V IPVI NG I D A + + TG +M+GR A G IF+ I + Sbjct: 188 ADLEALAKVVSAVKIPVIGNGGIVDVNTADKMFE-TGVRGIMVGRGAIGNINIFKSIING 246 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 D L E ++ +++ +FYG G +RK V ++++ + R F Sbjct: 247 CDI-----ELNPKENVKIFFNLIKQNVNFYGEKNGIARSRKTVGFWIKGFPMAGEIRGEF 301 Query: 301 NAIEDASEQLEALEAYF 317 + + + Y Sbjct: 302 VKLNTLAAVQKLFGEYL 318 >UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogaceae RepID=A7HK00_FERNB Length = 322 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 143/312 (45%), Gaps = 19/312 (6%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 L + APMAG+TD PFR LC + GA +EM+S+ + + + DE Sbjct: 7 LPGNIGLAPMAGVTDYPFRKLCLQHGAYFAFTEMISAKSVIINVKINEIYFPRQDEKDRV 66 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 VQ+ GSD E+++AA I E G +D+N GCP KV +K AGSALL+ + ++ Sbjct: 67 GVQLFGSDYAELSEAAAIVQEKGL-WVDLNAGCPVSKVIKKGAGSALLKDLGEFRKVVRA 125 Query: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187 + + + T+K R GW + E+I + + + A+ +HGRT +++G+A + Sbjct: 126 MRSVL-KRFTVKTRIGWEKDE--FEKIYNILLEENVDAVFVHGRTAKQMYSGKATW---- 178 Query: 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELL 247 + +P+ +GDI + ++ +GA +++ R + G PWIF EI Sbjct: 179 KIYNPGFVPLYISGDIYTKEDIKNAMEQSGATGVIVARGSIGNPWIFSEIGE-------- 230 Query: 248 PPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 + + H+ L+D Y + RK V+ Y + FR I Sbjct: 231 --PNCEQRLCTILKHLEYLYDEYKDYGAV-VFRKFVAGYTKNMLGARDFRDKVMKIRKLE 287 Query: 308 EQLEALEAYFEN 319 E + +F Sbjct: 288 ELSSEFQKFFYE 299 >UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME Length = 604 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 10/286 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R +L+ +P+ + + PFR +C E GA +T EM + P + + Sbjct: 253 VDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLKGMGQEWALTKRHQSED 312 Query: 66 IRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + VQ+ G++P + AA++ E+ ID+N+GCP + ++ GSAL++ ++++ Sbjct: 313 VFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILELT 372 Query: 125 LTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 + D +P T+K+RTG + E+ L E+ G A+T+HGR+R + A + Sbjct: 373 VRSCAALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRYTKHANW 432 Query: 184 DSIRAVKQKVSI-PVIANGDITDPLKARAVLD-YTGADALMIGRAAQGRPWIFREIQHYL 241 I K PVI NGDI ++MIGR A +PWIF+EI+ Sbjct: 433 AYIEECAAKAKCMPVIGNGDILSYEDYMERRTLAPHVCSVMIGRGALIKPWIFQEIKEKQ 492 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWY 286 + +L + +G KG R+ + + Sbjct: 493 AWS-----PSSGQRYEMLQKFCNYGLEHWGSDTKGVETTRRFLLEW 533 >UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota RepID=B9HRE5_POPTR Length = 362 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 125/287 (43%), Gaps = 10/287 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R +L AP+ + + PFR +C +GA +T EM + + Sbjct: 11 IDFRGKLYLAPLTTVGNLPFRRVCKALGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 70 Query: 66 IRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + VQI G+ P + + E IDINMGCP V K AGS+LL P +KSI Sbjct: 71 LFGVQICGAYPDTVTRTVELIDQECTVDFIDINMGCPIDIVVNKGAGSSLLTKPMRMKSI 130 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + V+ P+T+K+RTG+ + + G A+TIHGR+R ++ A++D Sbjct: 131 IEATSGTVEKPITVKVRTGYFEGKSRIDSLIVDIGKWGASAVTIHGRSRQQRYSKLADWD 190 Query: 185 SIRAVKQKVS--IPVIANGDITDPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQHYL 241 I +K + V+ NGD+ + D + MI R A +PWIF EI+ Sbjct: 191 YIYQCARKAPDSLQVLGNGDVFSFVDWNNHKSDCPELSSCMIARGALIKPWIFTEIKEQR 250 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E +L +VR + +G KG R + +L Sbjct: 251 HWD-----ISSGERLNILKDYVRSGLEHWGSDTKGVETTRHFLLEWL 292 >UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_DROME Length = 505 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 122/301 (40%), Gaps = 25/301 (8%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R + APM ++ +R LC GA L S M +N + + + E Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLI 86 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q G+D +++ DAA + + +DIN+GCP R GS L +++ I++ + Sbjct: 87 IQFCGNDAQQILDAA-LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTL 145 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSI 186 + VPVT KIR + A++ E G Q LT+HGRTR G A ++ I Sbjct: 146 HAKLAVPVTCKIRI--FEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYI 203 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + V+Q + IP++ANG+I L TG D +M P IF+ + Sbjct: 204 KNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGV--------- 254 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ---EHAPNDQFRRTFNAI 303 P ++ ++ + P+ R H+ N + R+ Sbjct: 255 -SPPVW----QMAHEYLELVQLHPCPS---SFIRGHLFKLFHHIMNIRQNSELRQYLATA 306 Query: 304 E 304 Sbjct: 307 N 307 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 140/321 (43%), Gaps = 9/321 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDK-SRLRM 58 M IG + NRLI APMAG+T FR + G GL + M + E+ K S + Sbjct: 1 MAIGGKTIANRLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKVSTVFS 60 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 E QI GS P+ MA AA G +DIN GC A+ + R +G+ALL P Sbjct: 61 WREKELDHTVCQIFGSVPETMAKAAERIEAEGFFGVDINCGCSARAICRFDSGAALLAKP 120 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 D+ ++ V AV++PV +K RTGW + + +A+L D G AL H R L Sbjct: 121 DLAAQVVRAVRKAVNIPVIVKFRTGWKDDPAHAVSMARLFCDEGADALIFHPRVAPDLRT 180 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +++ I VK V +PV NG++ A +L +G D + +GR A +PWI + Sbjct: 181 RPPKWEYIGLVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIALAQPWIMAQWS 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 + L + K A + P + K +Y + Sbjct: 241 QGM-------KPALEDYKTAGAAMASFCAKRFEPRTAFLRFMKFSPYYCANFQFGHALHK 293 Query: 299 TFNAIEDASEQLEALEAYFEN 319 A ++ + LE +F++ Sbjct: 294 RLFAAKEIDNIIPVLENFFQS 314 >UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=Alphaproteobacteria RepID=DUS_RHOCA Length = 324 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 174/316 (55%), Gaps = 3/316 (0%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDK-SRLRMVHIDE 63 +L ++ APMAGITD PFR + GAGL VSEM++S + + Sbjct: 7 SLRLDPPVLLAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKPSVRAKAQAELTA 66 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +VQ+AG + MA+AA+I + GA+IIDINMGCPAKKV L+G+AL++ PD Sbjct: 67 GLPTSVQLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALR 126 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 ++ VV AVD+PVTLK+R GW + N EIA AE G++ + IHGRTR + G A++ Sbjct: 127 LIEAVVGAVDLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIHGRTRMQFYTGAADW 186 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 +I AV+ VS+PV+ANGDITD AR LD +GA +M+GR AQG PW +I L Sbjct: 187 RAIAAVRAAVSVPVVANGDITDAASARRALDQSGAAGVMVGRGAQGAPWRLAQIAAALFG 246 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAI 303 +E + H + FYG G RIARKH+ WY + A R Sbjct: 247 KADPKLPSGSEFSDFVSEHYEAILSFYGRDLGLRIARKHLGWYAE--AAAAPLRAEMMRA 304 Query: 304 EDASEQLEALEAYFEN 319 D + L + + F Sbjct: 305 TDPAATLALIRSAFSE 320 >UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=Micromonas RepID=C1E909_9CHLO Length = 353 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 129/315 (40%), Gaps = 8/315 (2%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + APM ++ FR LC GA + M+ + V + + Sbjct: 34 SPKFHVAPMVDQSELAFRELCRRHGATCAYTPMIHARLFVEDLKYRKEIFTTHINDRPLL 93 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ +DP + AA I V +DIN GCP + R G+ L+ + V +++ ++ Sbjct: 94 VQFCANDPDMLLKAASI-VAPHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHNLINKL 152 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSI 186 + VPVT KIR + + A++ E G Q + +HGRTR A + I Sbjct: 153 DKHLSVPVTAKIR--VYDDLETSLKYAKMVEAAGAQLIAVHGRTREQKRAADVRANWAFI 210 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 R +K+++ +PV+ANGDI +A L+ TGAD ++ P +F + Y + Sbjct: 211 REIKKQLKVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENPSLFSDPPLYSPSDPA 270 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIED 305 P +V L E+ Y R+ + HV + R N Sbjct: 271 HPLPVEGDVNCELLHEYLEITRTY--QTPLRMVKGHVHNMVGSWLKEFTDLRDWLNKTPH 328 Query: 306 ASEQLEALEAYFENF 320 + ++ L+A+ + Sbjct: 329 SEMTVDKLQAWTKEL 343 >UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129C Length = 333 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 92/319 (28%), Positives = 159/319 (49%), Gaps = 13/319 (4%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID 62 +G ++ NR++ AP+AGI + R GAGL VSEM+SS+ + ++K+ ++ + Sbjct: 11 LGGVEIPNRVVLAPLAGIGNWFVRLQAKRYGAGLAVSEMVSSHAIHYGNEKTCTELLRVH 70 Query: 63 EPG-------IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALL 115 ++Q+ G+DP M AA E+GA +ID+NMGCP KV + AG+AL+ Sbjct: 71 PDEWRAGAGGPVSIQLFGNDPDIMRSAAARAAETGANLIDLNMGCPVPKVCKTGAGAALV 130 Query: 116 QYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA-QLAEDCGIQALTIHGRTRA 174 + PD+ I +PVT+K+R G P RN E+A +L D GI L IH R + Sbjct: 131 KDPDLAVEIARAAAEGSGLPVTVKLRPGLRPGDRNGIELAYRLVADAGIAGLCIHPRHAS 190 Query: 175 CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 +G +Y+ + + +++ +PV+ +G + R V ++TGA+A+++ R + G PW+F Sbjct: 191 QQHSGRPDYELAKRLVEELPVPVLISGGLRSAELVREVFEFTGAEAVLLARGSLGNPWLF 250 Query: 235 REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPND 294 ++ G+ + E+ + + + G + R RK WY+ Sbjct: 251 EQVL-----GDRVGEPTREEILTEVDWILDRAVEHLGEGRAARYLRKFYPWYVTRLGEGA 305 Query: 295 QFRRTFNAIEDASEQLEAL 313 + + E +E A Sbjct: 306 ELQDRLQRTETVAEARAAF 324 >UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5AE6 Length = 474 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 23/313 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R + APM ++ +R L + GA L + M+ ++ + + + E Sbjct: 18 RPTKLVAPMVDQSELAWRMLSRKYGAELCYTPMLHASVFLRDPQYRIDGLASCPEDRPLI 77 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ +DP + +A + + +DIN+GCP R G+ L + ++V ++ Sbjct: 78 VQFCANDPDILTKSA-LLAQDHCDAVDINLGCPQTIAKRGNYGAFLGENWELVTKLIKAC 136 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYDSI 186 + VPVT KIR + + A++ E G Q LT+HGRT+ G A ++ I Sbjct: 137 HEKLSVPVTCKIRI--FTDVEKTVQYAKMIERAGCQLLTVHGRTKEMKGPMTGLASWEHI 194 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 +AVK V IPV ANG+I ++ TG D +MI P +F + + Sbjct: 195 KAVKDAVKIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCLFVGKKTIIW---- 250 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTFNAIED 305 + +++ + AR HV + + R + +D Sbjct: 251 ----------EIALEYLQCAVKY---PCPASYARGHVFKICHHGLQRHTRARDLLASSKD 297 Query: 306 ASEQLEALEAYFE 318 + A+E + Sbjct: 298 IQDMKTAVEVLRD 310 >UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8N483_COPC7 Length = 561 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 123/319 (38%), Gaps = 21/319 (6%) Query: 2 RIGQYQL-----RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRL 56 ++G Y + I APM ++ FR LC + GA L + M+++ +KS Sbjct: 21 KLGGYDFYRKLGSPKYIVAPMVDQSELAFRRLCRQYGAQLIYTPMINAKMFTDPVNKSYR 80 Query: 57 RMVHI---------DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNR 107 VQ +DP ++ +A+ VE +DIN+GCP R Sbjct: 81 ASAFDIASGEEGDMASDRPLIVQFCANDPDQLLQSAK-VVEKYCDAVDINLGCPQDIAKR 139 Query: 108 KLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALT 167 GS L ++ S++ + + +PVT K R P+ E A++ E G Q LT Sbjct: 140 GRYGSFLQDDWPLIYSMINTLHVNLSIPVTAKFR--VFPDVEKTVEYAKMLERAGAQILT 197 Query: 168 IHGRTRACLF--NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGR 225 HGR R G A++ IRAVK+ V +PV ANG+I L+ TG D +M Sbjct: 198 CHGRIREQRGQNTGLADWSKIRAVKEAVKVPVFANGNILFQDDIARCLEETGCDGVMSAE 257 Query: 226 AAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW 285 P +F + + P L + L + + + H+ Sbjct: 258 GILYNPALFYGLDAP-SSSPKPPTTDLYPMHTTLASQYLSIVLSLKTKTPVSAVKGHLFK 316 Query: 286 YLQEHAPND-QFRRTFNAI 303 ++ + R Sbjct: 317 LMRPALTRELDLRERLGRT 335 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 88/317 (27%), Positives = 128/317 (40%), Gaps = 25/317 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R + APM ++ +R L GA L + M+ ++ + + R + DE Sbjct: 17 SPRYVVAPMVDQSELAWRLLGRRHGAQLCYTPMLHASVFLKDPKYRRDALASCDEDQPLV 76 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ +DP+ + A+R+ V +D+N+GCP G+ L D++ ++ V Sbjct: 77 VQFCANDPEVLVQASRLVV-GHCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLARMVQRV 135 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSI 186 VDVP+T K+R PE AQ+ E G Q LT+HGRTR G A ++ I Sbjct: 136 HTQVDVPITCKVR--VFPEVEKTVRYAQMLEAAGCQVLTVHGRTREQKGPHTGLASWEHI 193 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 RAVK+ V IPVIANG+I A L TGADA+M P++F TG L Sbjct: 194 RAVKRSVKIPVIANGNIQYLEDAERCLRETGADAVMSAEGHLHNPYLF--------TGRL 245 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE---HAPNDQFRRTFNAI 303 P + A + L R H+ + A N R Sbjct: 246 AP---------VWEASLEYLCLVRDHPCPASYVRGHLFKLMHHCLTMAENVDLREKLAKA 296 Query: 304 EDASEQLEALEAYFENF 320 E + Sbjct: 297 SALEAFEEVALRLRDRL 313 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 152/351 (43%), Gaps = 31/351 (8%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAG---LTVSEMMSSNPQVWESDKSRLR 57 + ++ I +PM G+TD PFR LC + L VSE + ++ + + Sbjct: 13 FNLRNKEIFPNTILSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFNPDGHKQ 72 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAA-RINVESGAQIIDINMGCPAKKVNRKLAGSALLQ 116 + E VQI G P MA AA +I + I++N GCPA KV K +GS LL+ Sbjct: 73 LKFFPEERPFGVQIFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGSGSGLLR 132 Query: 117 YPDVVKSILTEVVNAVD-----VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGR 171 ++ IL +V +D +P+TLK R GW + N E ++AE G++ LT+HGR Sbjct: 133 DLPRLQEILHDVKAVLDAKTPEIPLTLKCRIGWDDDSINVMETLKIAEGEGVEMLTVHGR 192 Query: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 TR +NG A +D I V IPVI NGD+ AR ++ G + IGR A P Sbjct: 193 TRLQGYNGLANWDWIGKVAAAAKIPVIGNGDVNSVECARERINTYGVSGVSIGRGAMHNP 252 Query: 232 WIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFY-GPAKGYRIARKHVSWYLQEH 290 WIF +I + E + E + + + + ++ + + Sbjct: 253 WIFGQIADAWEGREKHV-ITAQEALDVFPLYYKFKIEDGATEMNAMGRMKQLAARLCKGF 311 Query: 291 APNDQF--------------------RRTFNAIEDASEQLEALEAYFENFA 321 ++++ R+ + A+E LE +E + A Sbjct: 312 VLDEKYCHPGAEGDRIQDGDNVAMSVRQALLTCQSAAEMLECVEKLKDGIA 362 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 146/315 (46%), Gaps = 12/315 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + +I APMA T FR LC +GA T +E++S+ + +L +E Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRNGIPMKLAYFT-EEERPIH 63 Query: 69 VQIAGSDPKEMADA-ARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 +Q+ GS+P+E+A A I E IDIN GC KV R A +LQ P ++ ++ E Sbjct: 64 IQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKE 123 Query: 128 VVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 V A+ +PV+ KIR G+ + E I + + G+ + IH RT F+G+A + Sbjct: 124 TVEALKPYGIPVSAKIRLGFEKDE--VERIVEELQKAGVSLIAIHARTAKQGFSGKALWH 181 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I+ K+ S+P+I +GD+ + + T D +M+GRAA PWIF+E + D Sbjct: 182 RIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEKRDI- 240 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIE 304 + L E + + + ++ K + + L+ + + + E Sbjct: 241 ----EVGLKERMDFILEELSMMTEYMSREKACAEIKSQIVQILKGVPNSRELKTYIVHAE 296 Query: 305 DASEQLEALEAYFEN 319 + E ++ +E E Sbjct: 297 NCKELVKRIEEAKER 311 >UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Treponema RepID=DUS_TREPA Length = 340 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 100/325 (30%), Positives = 156/325 (48%), Gaps = 11/325 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + IG L+ + AP+AG +D FR++ E A T +EM+SS V +S ++ + Sbjct: 10 VSIGPLSLKGNVFFAPVAGYSDSAFRSIAIEWEASFTYTEMVSSEAMVRDSLNTKRLIRR 69 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPD 119 +QI GS+P MA+ A++ V+S IDIN GCP K+ + AG+AL + P Sbjct: 70 ASNETHYAIQIFGSNPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTGAGAALTREPT 129 Query: 120 VVKSILTEVVNAV-----DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRA 174 + ++ V +AV +PVT+KIR GW H +E A+ A D G QAL +H RT A Sbjct: 130 RLYEVVKAVADAVYAQDARIPVTVKIRAGWEEAHLTWKEAARAAVDAGAQALALHPRTCA 189 Query: 175 CLFNGEAEYDSIRAVKQKVS----IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 + GEA +D I + Q +PV +GD+ P ARA+L++T +M R A G Sbjct: 190 QCYAGEANWDIIADLVQCARGWGEVPVFGSGDLHAPEDARAMLEHTACAGVMFARGAMGN 249 Query: 231 PWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEH 290 P+IFR+ + L G P+ + R + L G + + RK Y + Sbjct: 250 PFIFRQTRQLLTEG-YYTPVTFEQKLRAAWRELHLLAQDVGESSACKQMRKRFVSYAKGE 308 Query: 291 APNDQFRRTFNAIEDASEQLEALEA 315 Q+ + ++ + Sbjct: 309 RGKTQWCQRAVHASSFADFAAVIRD 333 >UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6M9N8_PARUW Length = 297 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 136/277 (49%), Gaps = 2/277 (0%) Query: 41 MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGC 100 M+ + + + + + Q+ GS P AA+I E G I+D+N GC Sbjct: 1 MVKMDALIRHDPHTYHILDYAANMHPIGGQLCGSKPSIAGQAAKIIEELGFDIVDLNCGC 60 Query: 101 PAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED 160 P K+ + +GS LL+ P+++ I+ +V+AV +PVT+KIR GW + E I Q+ E Sbjct: 61 PVDKITKDGSGSGLLKTPELIGEIVCNMVSAVKIPVTVKIRAGWDEQQIQVENIVQIVEQ 120 Query: 161 CGIQALTIHGRTRACLFNGEAEYDSIRAVK-QKVSIPVIANGDITDPLKARAVLDYTGAD 219 G QA+ IHGRTR + G A ++ I+ K SI +I NGD+ D A + TG D Sbjct: 121 AGAQAICIHGRTRQQGYRGPANWEYIKRGKLAAKSIKIIGNGDVLDGPSAAKMFCETGCD 180 Query: 220 ALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA 279 A+++ R G+PWI ++I YL+ G+ L + ++ L H E ++ + Sbjct: 181 AVLVARGTLGQPWIVQDILRYLE-GKTAICHSLEDCRQALYQHFLETLHYHPDQRVCIDM 239 Query: 280 RKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAY 316 R+ WYL++ + FR + D + + Sbjct: 240 RRVGCWYLKKSSGTRLFRELISKASDVEVIKNLILDF 276 >UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota RepID=DUS3_USTMA Length = 867 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 72/307 (23%), Positives = 118/307 (38%), Gaps = 30/307 (9%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R L AP+ + PFR +C G+ + EM + + + + + Sbjct: 486 LNWRGELYLAPLTTTGNLPFRRICTGYGSDIHCGEMGLAESFLHGNAAEWSLVRRHESER 545 Query: 66 IRTVQIAGSDPKEMADAARINVE---SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 I Q+ G P + A G +DIN GCP V K AGSALL +P + Sbjct: 546 IFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGCPIDLVFNKGAGSALLDHPTKLS 605 Query: 123 SILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ + + D P+T+K+RTG + + A+ + + A T+HGR+R + +A Sbjct: 606 KIVRGMNAVLGDTPLTIKLRTGTGAKQTTHKIFAKAQTEWRVAAATLHGRSRKQRYKNDA 665 Query: 182 EYDSIRAVK--------------------QKVSIPVIANGDITDPLKARAVLDYTGADAL 221 ++ I + V IPV NGD+ ++ T D Sbjct: 666 DWGYIATCANTLRESVSEWNESSRFADEPEMVPIPVYGNGDVYSWQDYYERIERTHVDGE 725 Query: 222 MIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIAR 280 MI R A +PW+F EI+ D + E ++ +G G R Sbjct: 726 MIARGALIKPWLFTEIKERRDWD-----ISSRERLDMMRKFAEYGLTHWGSDTHGVNTTR 780 Query: 281 KHVSWYL 287 + + + Sbjct: 781 RFMCEMM 787 >UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus RepID=Q1J2A4_DEIGD Length = 333 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 153/311 (49%), Gaps = 18/311 (5%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI-DEPGIR 67 R + APMAG +D P R L E GA TVSEM+S+ V D +L + R Sbjct: 14 RPGAVLAPMAGYSDAPMRQLAAEQGALWTVSEMISARGLVLGGDSEKLTLGRPYPGEVGR 73 Query: 68 TVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQ+ G++P +A A A +D+NMGCP KV + G+ LLQ P+V +++ Sbjct: 74 VVQLFGAEPDVLAQAVARAESWFAPAALDLNMGCPVPKV-KGRGGACLLQTPEVAYTLVR 132 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + +A + V+ KIR GW + EIAQ G +T+HGRT ++GEA++D+I Sbjct: 133 AMRSATTLDVSAKIRLGWDTDRS--VEIAQGLAAAGAALITVHGRTSVQRYSGEADWDAI 190 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 V V +PV+ +GD+ +ARA L+ TG A+MIGR A G PW+FR + D Sbjct: 191 ARVAASVKVPVVGSGDVKSAEQARARLN-TGVAAVMIGRGAVGNPWLFRALASGDD---- 245 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAK----GYRIARKHVSWYLQEHAPNDQFRRTFNA 302 E R H + FYGP + R RK + YL + + R Sbjct: 246 -VVPSAQERARTALRHAQLHVTFYGPDRFGLLSVRPLRKVLPHYL---PDHPELRAALVQ 301 Query: 303 IEDASEQLEAL 313 + ++ +AL Sbjct: 302 VNTVADVEQAL 312 >UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasidiella neoformans RepID=DUS3_CRYNE Length = 725 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 23/298 (7%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 AP+ + + PFR LC + GA +TVSEM + P V+ + + + + Sbjct: 354 LNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGAKEEWALVRRHESEK 413 Query: 66 IRTVQIAGSDPKEMADAARINVES-----GAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 + VQ+AG P M AA + + G +D+NMGCP V + AGSAL+ P Sbjct: 414 MFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGR 473 Query: 121 VKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCEEIA-QLAEDCGIQALTIHGRTRACLFN 178 + +L + A+ D+P+T+K RTG A N ++ + + G ALTIHGR+R ++ Sbjct: 474 LGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWGAGALTIHGRSRQQRYS 533 Query: 179 GEAEYDSIRAVKQK----------VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 A+++ I+ +P+ NGD +D +G D +M+ R A Sbjct: 534 KPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEEMDRSGVDGVMVARGAL 593 Query: 229 GRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSW 285 +PWIF EI+ + + E + +G +G R+ + Sbjct: 594 IKPWIFTEIKERREWD-----ISAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCE 646 >UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1LWM8_METRJ Length = 341 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 118/296 (39%), Positives = 163/296 (55%), Gaps = 3/296 (1%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + AP++G+TD R + GA +SEM+++ S ++ LR + VQ+A Sbjct: 27 LLAPLSGVTDLHMRRIARRCGADAVISEMVAAREFTRGSGEATLR-AEGSGVDLHVVQLA 85 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 G + MA+AAR+ GA +ID+NMGCPAK V +GSAL++ D + +L V AV Sbjct: 86 GCEAGPMAEAARLAEAGGADVIDVNMGCPAKIVTGIASGSALMRDLDHAERLLASVRGAV 145 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 +PVT+K+R GW RN ++A AE G+ A+T+HGRTR + G A++ +IRAV Sbjct: 146 SIPVTVKMRLGWDDASRNAADLAARAERLGLNAVTVHGRTRQQFYKGRADWAAIRAVVAA 205 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 VSIPVIANGD+TD ARA LD +GA +MIGRAA GRPW+ ++ L TG Sbjct: 206 VSIPVIANGDVTDFASARACLDASGAAGVMIGRAATGRPWLVGQVAAAL-TGRPAAEPSR 264 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTFNAIEDAS 307 +E L H L YG G R ARKH++ Y A + R D Sbjct: 265 SEQAALAAEHYAGLLSLYGRDMGVRHARKHLAAYAETGGALDPAERSALLTTTDPE 320 >UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54ES7_DICDI Length = 344 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 140/305 (45%), Gaps = 20/305 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 I APM + PFR L + G +T + M+ + VQ Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAARDSDFTINKLDEPLIVQFG 117 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 ++ +E+ AA + Q IDIN GCP + V ++ G+ LL +P+ + ++ ++ N V Sbjct: 118 VNNAEELVSAAEKVKD-YCQGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINNRV 176 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 +P+++KIR + ++ E+A+ AE G+ +T+HGRT A + +YD+I+ VK Sbjct: 177 PIPISIKIR--VQSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHPVDYDAIKLVKDN 234 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 V++PV ANGD+ ++ + + TG + +M R P +F+ P+ Sbjct: 235 VTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGYD----------KTPI 284 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEA 312 +K + + YG I +H+ + L E+ ++ + FN + S ++ Sbjct: 285 ECIKDFINIYSE-----YGGLHPV-IFHRHLMYMLYEYHNKNE-KSEFNKLSTISGIMDY 337 Query: 313 LEAYF 317 + F Sbjct: 338 INDKF 342 >UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax=Trypanosomatidae RepID=Q582L4_9TRYP Length = 528 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 84/320 (26%), Positives = 126/320 (39%), Gaps = 16/320 (5%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 N+L+ AP+ + + PFR +C E GA +TV EM + + I Sbjct: 164 FSNKLVLAPLTTVGNLPFRRVCKEYGADITVGEMAIVHNLNRLQKSEWSLLRRHSSEDIF 223 Query: 68 TVQIAGSDPKEMADAARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYP-DVVKSI 124 +QIA S P + A+ ESG +DIN GCP KV G L + + ++ + Sbjct: 224 GLQIAVSRPHDAITWAQAVEESGFSYDFVDINCGCPVDKVVLSGCGCGLWERKGNRLRDV 283 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + +V PVT+K R G E+ + E G A+TIHGR+R + A + Sbjct: 284 VQSLVAHQSKPVTIKCRMGPDEENPELHKHIADYETWGAAAVTIHGRSRRQRYTKLANWS 343 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYT-GADALMIGRAAQGRPWIFREIQHYLDT 243 I S+PVI NGDI + + MIGR A +PWIF EI+ Sbjct: 344 YIDNCASLTSLPVIGNGDIFSCEDIVEHRAQSKNVSSFMIGRGALVKPWIFEEIKTGRVW 403 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL----QEHAPNDQFR- 297 + E +L +G +G R+ + +L + R Sbjct: 404 D-----ISSHERFEMLRRFCNFGLSHWGADERGVLNTRRFLCEWLSFLCRYVPVGLLERP 458 Query: 298 -RTFNAIEDASEQLEALEAY 316 + N E + LE Sbjct: 459 PQRINERPPYYEGRDELETL 478 >UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=Proteobacteria RepID=B3PD21_CELJU Length = 321 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 11/310 (3%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNP------QVWESDKSRLRMVHIDE 63 R++ APM G+ + R + +G V+E + ++ + Sbjct: 2 RIMLAPMEGVVEHHVRDILTRLGGLDGCVTEFIRVTDQKLPYKVFYKYAQELENHCQTPN 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ GS P+ MA A+ V GA+ ID+N GCPAK VN G+ LL+ PD V S Sbjct: 62 GTPVKVQLLGSKPEPMALNAQELVRYGAKAIDLNFGCPAKTVNSHEGGACLLRTPDRVYS 121 Query: 124 ILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ V +AV +PV+ KIR G+ + + E AQ E G LT+H R++A + A Sbjct: 122 IIKAVRDAVPRAIPVSAKIRLGF-EDRTSYMENAQAVEAAGADELTVHARSKADGYKPPA 180 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 + I +K + IPVIANG+I + + +M+GR P + R+I+ YL Sbjct: 181 YWHYIADIKAALKIPVIANGEIWSVEDYLRCREQSQCADVMLGRGLLSCPDLARQIKAYL 240 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 E P L EV ++L + R Y ++ + + +++ + F Sbjct: 241 AGEEYRP-LTWGEVCQILFDYYRLTTPLYETRNCGNRVKQWLMYLSRQYPEANVFFEAVK 299 Query: 302 AIEDASEQLE 311 ++ Sbjct: 300 RKTTPADIEA 309 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 81/322 (25%), Positives = 136/322 (42%), Gaps = 26/322 (8%) Query: 7 QLRNRL-IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDE-- 63 L+ + APM G ++ +R L GA + +EM++ + + + Sbjct: 6 NLKKPYKVLAPMVGNSELAWRILARRYGADICYTEMVNCDTFIRSKINPLSNRWYTTNKI 65 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +QI G+D +M + I E IDIN+GCP + + GS L+ VK Sbjct: 66 DRPLIIQICGNDVNKMLKVSLILQE-YCDAIDINLGCPQEIARKGNYGSFLMDDLLKVKE 124 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF--NGEA 181 I+T + N + VPVT KIR E A++ E G + LT+HGRTR G A Sbjct: 125 IVTVLSNNLKVPVTCKIRI--FESIEKSVEYAKMIEQAGCKMLTVHGRTRDQRGLNTGLA 182 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 +D IRA+K ++IPVI+NG+I + ++YT D +M+ P IF I+ + Sbjct: 183 SWDHIRAIKASLNIPVISNGNIINNSDIDNCVEYTKCDGVMVAETHLYNPLIF--IKRHS 240 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEH-APNDQFRRTF 300 T + ++ + Y + H L++ +F Sbjct: 241 KTN-----------ISIYKEYLNIFLENYNE-YDIHTIKSHTFKLLKKFLKQYPEFSEHI 288 Query: 301 NAIEDASEQL---EALEAYFEN 319 N + + + + LE + ++ Sbjct: 289 NLCKTLKDYINLCDVLETFIKD 310 >UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Magnoliophyta RepID=DUS3L_ARATH Length = 700 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 126/287 (43%), Gaps = 10/287 (3%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R++L AP+ + + PFR LC +GA +T EM + + Sbjct: 343 IDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 402 Query: 66 IRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 + VQI GS P ++ + E IDINMGCP V K AGSALL P +K+I Sbjct: 403 LFGVQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNI 462 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYD 184 + + V+ P+T+K+RT + + + + G A+TIHGR+R ++ A++D Sbjct: 463 VEVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKSADWD 522 Query: 185 SIRAVKQK--VSIPVIANGDITDPLKARAVL-DYTGADALMIGRAAQGRPWIFREIQHYL 241 I + ++ VI NGD+ L D + MI R A +PWIF EI+ Sbjct: 523 YIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIARGALIKPWIFTEIKEQR 582 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + E ++ VR +G KG R + +L Sbjct: 583 HWD-----ITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLEWL 624 >UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2SJJ8_HAHCH Length = 349 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 75/327 (22%), Positives = 123/327 (37%), Gaps = 25/327 (7%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDE 63 R APM TDR +R L + +EM+++ + L E Sbjct: 13 GISGLRRFSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRNRFLDF--NAE 70 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ GS+P E+ + A+I + G I++N+GCP+ +V + G+ L+ YP+ V Sbjct: 71 EHPIAVQLGGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAE 130 Query: 124 ILTEVVNAVDVPVTLKIRTGWAPEH--RNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 + + +AV +PVT+K R G + + + G IH R Sbjct: 131 CVAAMCSAVSIPVTVKHRIGIDDQDSEEFLLNFVRTVKAAGCSTFIIHARKAILKGLSPK 190 Query: 182 EYDSI--------RAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 E I +KQ + +I NG I ++ + L D +MIGR A RPW Sbjct: 191 ENREIPPLIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQE--VDGVMIGREAYQRPW 248 Query: 233 IFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP 292 + ++ H L PP + + + + Y +H Sbjct: 249 MLADVDHRLFHC---PPPSFSA-TDIGYQFLEYIERNYQNGVAVWHMARHALGLFHGQKG 304 Query: 293 NDQFRR-----TFNAIEDASEQLEALE 314 QFRR + +AL+ Sbjct: 305 GKQFRRYLSENAIKRTASPTVFRDALD 331 >UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Euteleostomi RepID=DUS1L_HUMAN Length = 473 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 119/315 (37%), Gaps = 26/315 (8%) Query: 1 MRIGQYQLRN-RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWES--DKSRLR 57 LR R + APM ++ +R L GA L + M+ + V ++ K L Sbjct: 7 FEFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLY 66 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 E VQ +DP+ AA + + ID+N+GCP R G+ L Sbjct: 67 CEVCPEDRPLIVQFCANDPEVFVQAA-LLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 125 Query: 118 PDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL- 176 D+++ ++ + VPVT KIR PE AQ+ E G Q LT+HGRT+ Sbjct: 126 WDLLQRMILLAHEKLSVPVTCKIR--VFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKG 183 Query: 177 -FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 +G A ++ I+AV++ V+IPV ANG+I L TG +M P +F Sbjct: 184 PLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALF- 242 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPND 294 + E ++ H R H+ + Sbjct: 243 ------EGRSPAVWELAEEYLDIVREH----------PCPLSYVRAHLFKLWHHTLQVHQ 286 Query: 295 QFRRTFNAIEDASEQ 309 + R ++ Sbjct: 287 ELREELAKVKTLEGI 301 >UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AII6_SEBTE Length = 309 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 161/306 (52%), Gaps = 7/306 (2%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI 71 +I APMAGITD FR + YE + +EM+ N + + +++ ++ VQI Sbjct: 3 IITAPMAGITDYSFRKILYEFSPDIIFTEMVDVNALKYSNQRTQDEILRKAGNE--AVQI 60 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNA 131 G+ ++ +A ++ +E G IDIN+GCP KK+ R GSALL D VK +L ++ Sbjct: 61 FGNKNEDFLEAVKLLIERGFDHIDINLGCPVKKIIRAGKGSALLLESDFVKELLLKLKKE 120 Query: 132 V--DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 D+ +++KIRTG+ + E +LAE+ G+ + IHGRT+ L++G+A+++ I+ + Sbjct: 121 FRNDIKLSMKIRTGY-KNFSDPEYYVKLAEEYGLFQICIHGRTQEQLYSGQADWNIIKKM 179 Query: 190 KQ-KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 KQ ++ +I NGD+TD + D D +M+ R G PW+ +E + Y TG Sbjct: 180 KQKHKNVKIIGNGDLTDLKTIKEKTDSAKPDGIMLARGLLGNPWLLKEAKDYFKTGVFHE 239 Query: 249 -PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 + E+K L H+ + G + RKH+ WYL+E ++ + + Sbjct: 240 SEVGREEIKNTLIKHINYCIEDKGEIRANLDMRKHIFWYLKEFENIEKIKNDIIKTKTIK 299 Query: 308 EQLEAL 313 + L+ + Sbjct: 300 DVLKYI 305 >UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Metazoa RepID=DUS4L_HUMAN Length = 317 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 137/306 (44%), Gaps = 21/306 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + APM + FRTL + L + M+ + V VQ A Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 +D + ++DAARI V A IDIN GCP + + G+ L+ P++V+ ++ +V N V Sbjct: 90 ANDARLLSDAARI-VCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQV 148 Query: 133 DVP-VTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 + P ++ I+ + + ++ Q AE G+ +T+HGRT YDSI+ +K+ Sbjct: 149 ETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQ-PVHYDSIKIIKE 207 Query: 192 KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251 +SIPVIANGDI +A V TG D +M+ R P +F E P Sbjct: 208 NMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY-------EETPLKC 260 Query: 252 LAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 + + + F+ +H+ + +++ + Q +R FNA+ S ++ Sbjct: 261 IWDWVDIALELGTPYMCFH----------QHLMYMMEKI-TSRQEKRVFNALSSTSAIID 309 Query: 312 ALEAYF 317 L ++ Sbjct: 310 YLTDHY 315 >UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=B8DIS9_DESVM Length = 383 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 138/306 (45%), Gaps = 5/306 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWES-DKSRLRM 58 + +G + RL APMAG+ FR + + G GL + M ++ E +KS Sbjct: 38 LTVGGRTVPGRLWLAPMAGLGHAAFREVVEDYGGCGLLFTGMCNARAVPTERPEKSEAFS 97 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 EP Q+ G++P+ MA+ AR G +D+NMGC + ++ G+ LL+ P Sbjct: 98 WRAGEPPRLVCQLFGAEPEHMAEGARRVQAEGFFGVDLNMGCSVSAIIKRGCGADLLRDP 157 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AVD+PV +K RTGW+P+ + ++A+ ED G L H R Sbjct: 158 ERAVRMVAAVRRAVDIPVFVKFRTGWSPDPQPAVDLARRFEDAGADCLVFHPRVAPDRRT 217 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 I VK VSIPV+ NGD+ P +LD TG D + +GR A RPW+F Sbjct: 218 QPPRRAHIGLVKAAVSIPVMGNGDVFTPEDCANLLDDTGCDGVSLGRIAVARPWVFAAWT 277 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 +D P P E L L +GPA+ R+ K + + + R Sbjct: 278 GMVDDDPDRNPAPWREAPLALL---DALARRHGPARAVRMFGKFLVYITGNFTYGNGLRG 334 Query: 299 TFNAIE 304 + Sbjct: 335 RLLRVT 340 >UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91_ARATH Length = 423 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 14/318 (4%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R + I APM ++ PFR LC + GA + M+ S E Sbjct: 87 RPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKEDRPLF 146 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ +DP + +AA+ VE +DIN+GCP + R G+ L+ +VKS++ ++ Sbjct: 147 VQFCANDPDTLLEAAKR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 205 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR--ACLFNGEAEYDSI 186 ++VPV+ KIR P + + A++ ED G L +HGRTR A++ +I Sbjct: 206 AQNLNVPVSCKIRI--FPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWSAI 263 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + VK + IPV+ANG++ + TG + ++ P F + + Sbjct: 264 KEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTAEWAKDN 323 Query: 247 LPPLPLA---EVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTFNA 302 + + L+ +++ +R+ R HV L + + Q R NA Sbjct: 324 EEEGFVDGGLDQGDLVVEYLKLCEKH---PVPWRMIRSHVHKMLGEWFRIHPQVREQLNA 380 Query: 303 --IEDASEQLEALEAYFE 318 I ++ E Sbjct: 381 QNILTFEFLYGLVDQLRE 398 >UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G230_PHATR Length = 545 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 16/293 (5%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 ++ AP+ + + PFR + + GA +T EM + + + E Sbjct: 183 IDFSKKVYVAPLTTVGNLPFRRIMKKFGADITCGEMAVATNLLSGQSSEWALLKRHPEED 242 Query: 66 IRTVQIAGSDPKEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 I VQIA P A + E +D+N+GCP V K +G+AL+ ++S Sbjct: 243 IFGVQIAAGYPDVFARTCELIENEMNVDFVDLNLGCPLDIVCNKGSGAALMMRDKRLRSS 302 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDC---GIQALTIHGRTRACLFNGEA 181 + ++ + P+++K+RTGW + Q + GI A+ IHGR+R + EA Sbjct: 303 VEGILETLTCPISIKMRTGWEMTKPFAHNLVQKIQSWGLDGISAVMIHGRSRLQRYAKEA 362 Query: 182 EYDSIRAVKQK-----VSIPVIANGDITDPLKARAVLDYTGADAL-MIGRAAQGRPWIFR 235 ++D I V + +IPVI NGDI + G ++ M+ R A +PW+ Sbjct: 363 DWDYISMVAKSQDMSLTTIPVIGNGDIFSYQDFEEKIAREGVNSCAMLARGALIKPWLPT 422 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 EI+ + +E +L R + +G +G R+ + +L Sbjct: 423 EIKERRHWD-----ISASERLDILKDFARFGMEHWGTDQQGINNCRRFLLEWL 470 >UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genome shotgun sequence n=4 Tax=Intramacronucleata RepID=A0EG06_PARTE Length = 360 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 74/316 (23%), Positives = 123/316 (38%), Gaps = 23/316 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 + I APM ++ FR L + G L + M+ S E Sbjct: 17 SPKFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSRIMTESKSYKDEFFTTCPEDRPLF 76 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q+ G DP+ + AA + + IDIN+GCP + L G+ LL+ + V +I+ E+ Sbjct: 77 AQLCGHDPQVLIKAALMIQDQ-CDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIVKEL 135 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSI 186 ++VPVT KIR + + ++ + ++ G LT+HGRT+ F G+ ++ I Sbjct: 136 KQNINVPVTCKIRM--FKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQCDWTII 193 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 +KQ + IPV ANG I L T DA+M A P +F Sbjct: 194 AEIKQILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSG---------- 243 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTFNAIED 305 + ++ L +++ + + H+ L R + + Sbjct: 244 ----EIKDLNDLALEYMQFAKQY---NARLAEIKAHLFKLLYTGLQIFTDLRSKLGSAKT 296 Query: 306 ASEQLEALEAYFENFA 321 E LE + A Sbjct: 297 YEEHLEVVIELKNKRA 312 >UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synthase 1-like n=2 Tax=Eumetazoa RepID=UPI000180C543 Length = 626 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 74/316 (23%), Positives = 129/316 (40%), Gaps = 24/316 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRL--RMVHIDEPGI 66 + + APM ++ P+R L GA L S M S+N V + + + E Sbjct: 14 SPKFVVAPMVDQSELPWRLLSRRHGAQLCFSPMYSANTFVHDHTYRNKVVQDLSSTEDHP 73 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQ + + +A++ VE + +D+N+GCP R G+ L + D++ I++ Sbjct: 74 LIVQFCSNSAENFLEASK-LVEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIEIIS 132 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYD 184 + + VT KIR E + AQ+ E G +T+HGRTR G A +D Sbjct: 133 TTKQHIGIGVTAKIR--VFNEIDKTVKYAQMLETAGCDIITVHGRTREQKGPNTGLASWD 190 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 I+AVK V IPV ANG+I ++ TG D +M+ P IF+++ + Sbjct: 191 HIKAVKDNVDIPVFANGNIQYYCDIMRCMETTGVDGVMVAEGNLTNPMIFQDLSTPCN-- 248 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW-YLQEHAPNDQFRRTFNAI 303 V ++ + + + AR H+ + + + R + Sbjct: 249 ----------VYDVVEEYFALVAQY---PCPLSSARSHMFRIWARTLLIHKDMRERIGSA 295 Query: 304 EDASEQLEALEAYFEN 319 + + L+ + Sbjct: 296 NNI-DMLKECNEVLKQ 310 >UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga lettingae TMO RepID=A8F480_THELT Length = 305 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 16/304 (5%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAGIT+R FR +C GA + +EM+S+ V + K+ RM+ DEP VQ+ G+DP Sbjct: 1 MAGITNRAFRKICTFWGAQFSFTEMISAESVVR-NFKTVQRMLPKDEP-NVAVQLFGNDP 58 Query: 77 KEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPV 136 K +A AA+I VE A IDIN CP KKV +K +G ALL + ++ I+ V ++V PV Sbjct: 59 KTLAQAAKI-VEPYAAWIDINAACPVKKVIKKNSGGALLNDLERLEKIIGSVKSSVQKPV 117 Query: 137 TLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIP 196 T+KIR G+ ++I G + +HGRT ++G+A +D + Q I Sbjct: 118 TVKIRIGFEKN--ILDQIVHSCIKAGADGIEVHGRTVVQKYSGKAFWDL--KLSQ-YGIS 172 Query: 197 VIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVK 256 +GDI + L+ +GA++ +I R A +PWIF +I + E+K Sbjct: 173 TAVSGDIFEAEDFHKALEMSGANSALIARGALRKPWIFAQITQKRT-------PKITEIK 225 Query: 257 RLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAY 316 H++ + G + R+ V+ Y +FR F + + +A+E + Sbjct: 226 ETFTKHLKMQIEDEGE-RSIYKMRQFVAGYTHGMRGAREFREKFMKLNKPEDMEKAIEEF 284 Query: 317 FENF 320 F +F Sbjct: 285 FNSF 288 >UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezia globosa CBS 7966 RepID=DUS3_MALGO Length = 766 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 30/307 (9%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 Q + L AP+ + PFR LC G+ + EM + + + + Sbjct: 391 LQWKGDLYLAPLTTTGNLPFRRLCASFGSDIHCGEMGMAESFLQGHASEWSLVRRWEGER 450 Query: 66 IRTVQIAGSDPKEMADAARINVE---SGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 I Q+ G+ P+ + A + G +D+N GCP V K AGSALL + + + Sbjct: 451 IFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDHANKLG 510 Query: 123 SILTEVVNAVD-VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ + A+ +P+T+K+RTG + + A+ + G+ L++HGR+R + +A Sbjct: 511 RIVRGMSEALGEIPLTIKLRTGTTSKPTTHKIFARAQTEWGVGGLSLHGRSRKQRYKNDA 570 Query: 182 EYDSIRAVKQK--------------------VSIPVIANGDITDPLKARAVLDYTGADAL 221 ++ IR V +PV NGD+ L++ D Sbjct: 571 DWAYIRTCVDTLHDAVRTWNEEPQHADEPDMVPVPVYGNGDVYGWRDYYDHLEHAHVDGT 630 Query: 222 MIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIAR 280 MI R A +PWIF EI+ D + E ++ + +G +G R Sbjct: 631 MIARGALIKPWIFTEIKERRDWD-----ISSRERLDMIRQYASYGLTHWGSDTQGVNTTR 685 Query: 281 KHVSWYL 287 + + L Sbjct: 686 RFLCEML 692 >UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F231_9HELI Length = 317 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 101/317 (31%), Positives = 164/317 (51%), Gaps = 14/317 (4%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 N L+ AP+AG +D PFR + + GA +TVSEM+S + +++ K+ + Sbjct: 4 NIIQPNTLMLAPLAGYSDLPFREVVKKFGADITVSEMISVHALAFKNKKTIKMIEKSPLE 63 Query: 65 GIRTVQIAGSDPKEMADAARINVESG--AQIIDINMGCPAKKVNRKLAGSALLQYPDVVK 122 +QIAG+D + A E QI+D+N GCPA KV+ +GS+LL+ + + Sbjct: 64 NPFALQIAGNDFGIIQKAVEFLNEFKNEIQILDLNCGCPAPKVSSHGSGSSLLKDLNKLV 123 Query: 123 SILTEVVN-AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG-E 180 IL + +V +++K+R G+ + EIA D I + +HGRT++ + + Sbjct: 124 KILQLLRETSVFPYLSVKVRLGFDKKIP--LEIANALNDSPIDYVVVHGRTKSDGYKKDK 181 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +YDSIR +KQ + P+IANG+IT P A+ V + TGA+ +MIGRAA +PWIF +I++ Sbjct: 182 IDYDSIRLIKQNIQHPLIANGEITSPQIAKKVQELTGAEGVMIGRAAIEKPWIFTQIKNN 241 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 L+ + K++ H F G + RK++ Y + FR Sbjct: 242 LE-------ESIELRKQVALEHFDRTISFRGDYGAI-MFRKNLHAYSKGLKGASDFRNKV 293 Query: 301 NAIEDASEQLEALEAYF 317 NAI + + E + +F Sbjct: 294 NAITNPALMREEIFNFF 310 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 140/323 (43%), Gaps = 14/323 (4%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHI------ 61 + R+I APM G+ D R L +G VSE + V S + L+ V Sbjct: 12 KTRIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTVH-SRATWLKYVPEIANGNK 70 Query: 62 -DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 TVQ+ GSD MA A V GA ID+N GCPA VNR G+ LL+ P++ Sbjct: 71 TFSGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPEL 130 Query: 121 VKSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + I+ + + +P+T K+R G+ + E A + G LT+H RT+A + Sbjct: 131 IFHIVKTLRERLPAHIPLTAKMRLGYEDKSP-ALECACAIAEGGACGLTVHARTKAEGYE 189 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 A ++ IR ++ V IPV ANGD+ + +G +++M+GR A RP + R+I+ Sbjct: 190 PPAHWEWIRKIRDSVDIPVTANGDVFSLQDYIGIKTISGCNSVMLGRGAVIRPDLARQIK 249 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELH-DFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 Y + G + AEV + + ++ + + P Sbjct: 250 QYENGGPV-KDTDFAEVSKWIRQFFELCLTKEANNKYPIARLKQWLGMMKKTFDPAQTLF 308 Query: 298 RTFNAIEDASEQLEALEAYFENF 320 ++DA E L A+ Sbjct: 309 DRVRTVKDADEVRRILNAFEHEI 331 >UniRef50_B0SXE6 TIM-barrel protein, nifR3 family n=2 Tax=Caulobacteraceae RepID=B0SXE6_CAUSK Length = 335 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 181/323 (56%), Gaps = 8/323 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60 + +G+ ++ R+ APM G++D PFR +GA +EM++ + R Sbjct: 5 LSVGKVEVPGRVWIAPMTGVSDLPFRETATRLGAAYVATEMVACAEFARGRPDAVRRAAV 64 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRK-LAGSALLQYPD 119 D + VQ+ G DP M AR+ E+GAQIID+N GCP+K+V +GSAL++ PD Sbjct: 65 GDGLPLMVVQLVGRDPTFMGQGARMAAEAGAQIIDLNFGCPSKQVTGGVASGSALMREPD 124 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + ++++ V AVDVPVT+K+R GW + RN +IA+ A D G QA+T+HGRTR + G Sbjct: 125 LAEALVAAAVRAVDVPVTVKMRLGWDDDSRNAADIARRAVDAGAQAITVHGRTRCQFYKG 184 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 A++ ++ AVK VS+PV+ NGDI D AR L+ +GAD +MIGR GRPWI + I+ Sbjct: 185 VADWSAVAAVKAAVSVPVLVNGDIIDGDTARLALEQSGADGVMIGRGVYGRPWIAQAIEA 244 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ--EHAPNDQFR 297 L+ GE E + H R FYG G ++ RKH++ Y++ +++ R Sbjct: 245 ALN-GEGFREPDAEERLAIAVTHFRRSLGFYGQNLGLKMFRKHLASYIEAAPWPDSEELR 303 Query: 298 R----TFNAIEDASEQLEALEAY 316 R +ED + + L A Sbjct: 304 RTARAALCRLEDPAAIEDGLAAL 326 >UniRef50_B9CKJ9 tRNA-dihydrouridine synthase B n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKJ9_9ACTN Length = 361 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 146/312 (46%), Gaps = 7/312 (2%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 N ++ APMAG++D +R L GA L +EM+S + +K+ + +D Sbjct: 37 HNPVLMAPMAGVSDGAYRLLARAGGAALAYTEMVSVAGIHFGGEKTWQLVYPLDPEPDIA 96 Query: 69 VQIAGSDPKEMADAA-RINVESGA--QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 VQ+ GS P++ +AA +I G +IDINM CP KV +K GSALL P I+ Sbjct: 97 VQLFGSKPEQFREAASQIAERLGPKLALIDINMACPVPKVVKKGEGSALLDNPVRAAEIV 156 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 ++ VDVPVT KIR G E A+ E G A+T+HGR + L+ G+A+++ Sbjct: 157 RACISEVDVPVTAKIRRGRTVGSECAPEFARALEAAGAAAVTVHGRFASQLYQGKADWNC 216 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 + V VSIPVI +GD+ A VL TG A+M+ R G PWIF + E Sbjct: 217 VERVVCAVSIPVIGSGDVMSAHDAARVLKTTGISAVMLARGTYGDPWIFANTRRACAEKE 276 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 L L++ HV L + AR +WY + +R Sbjct: 277 LFC-PTLSQRLSAFKLHVHLLEAAH---IHIARARSLSTWYFRGVPHAAYWRGRSVRCVT 332 Query: 306 ASEQLEALEAYF 317 AS+ + + Sbjct: 333 ASDFIRLADELL 344 >UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K738_THENN Length = 273 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 7/280 (2%) Query: 41 MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGC 100 M+S+ + S+K+R + E VQI GSDP+E++ AA + + ID+N GC Sbjct: 1 MVSAKGFLMNSEKTRELL-PSPEEKNVAVQIFGSDPEELSRAADVLSDEYP-WIDLNAGC 58 Query: 101 PAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED 160 P +KV +K AG LL+ D+ ++++ E+ V T+K R GW + +I ++ + Sbjct: 59 PVRKVVKKGAGGGLLRDLDLFRAVVKELRKHVKGKFTVKTRLGWNENQIS--KIYEILVE 116 Query: 161 CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADA 220 G+ + IH RT A F G+A++ S+ + + IP +GDI P A+ L+ +G Sbjct: 117 EGVDEVFIHTRTVAQAFTGKADWKSLSVLDK--KIPTFVSGDIFSPEDAKRALEESGCHG 174 Query: 221 LMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR 280 +++ R A GRPW+F++I+ +L+ G+ E+ R H+ L + G K + + Sbjct: 175 VLVARGAIGRPWLFKQIKDFLERGKYSE-PSTDEILRSFEMHLSLLVEDKGEEKAIKEIK 233 Query: 281 KHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENF 320 K V+ Y + +FR I++ E + Sbjct: 234 KFVAGYTKNLKGARRFRDEMMKIKNLQTLKEMFYNFLREV 273 >UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycetaceae RepID=D2QXV2_9PLAN Length = 354 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 148/328 (45%), Gaps = 9/328 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVW---ESDKSRLR 57 + IG + ++ A ++G +D P R + GA + E+M V + K+R Sbjct: 5 LVIGNVHVGFPVVQAALSGYSDWPMRVIARRHGASYALCEVMLDKFLVTLKGDRKKNRHF 64 Query: 58 MVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY 117 + DE Q+ G++P E A A E+G +IDIN GCP KKV + G L Sbjct: 65 LYLTDEDHPVAGQLMGAEPAEFAQGALRLAEAGFDVIDINFGCPVKKVLGRCRGGFHLSQ 124 Query: 118 PDVVKSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAE---DCGIQALTIHGRT 172 PDV I+ + V +PVT+K+R G + + ++ + G+ A+T+HGRT Sbjct: 125 PDVALEIVRRTRDIVPAHIPVTVKMRRGLDDTQLSRDRFFEILDGAFAAGVAAITVHGRT 184 Query: 173 RACLFNGEAEYDSIRAVKQKVSIPVI-ANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 + G + + + VK+ V VI +GD+ A++ TG D + + R A G P Sbjct: 185 VVQRYVGPSRWSFLTEVKRHVGSRVILGSGDLFSAQDCLAMMRETGVDGVTVARGAIGNP 244 Query: 232 WIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA 291 WIF + + L PP L E K + H R + YG K RK Y H Sbjct: 245 WIFSQCRALDAGEPLPPPPTLFEQKATILEHYRLAAELYGDDKCSAPMRKFGIKYAALHP 304 Query: 292 PNDQFRRTFNAIEDASEQLEALEAYFEN 319 + + R F ++ ++ L++++ Sbjct: 305 RHLELREAFTKVKCLADWQGVLDSWYAE 332 >UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii RepID=A9KG09_COXBN Length = 353 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 72/329 (21%), Positives = 124/329 (37%), Gaps = 20/329 (6%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 L R+ APM G TDR FR ++ L +EM+++ + + + E Sbjct: 25 LMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQ--WRCLDYSPEE 82 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +Q+ GSDP+ +A AR+ E G I++N+GCP+ +V G+ LL+ ++V Sbjct: 83 HPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADC 142 Query: 125 LTEVVNAVDVPVTLKIRTGWA--PEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 + + V++PV++K RTG + + + + G + IH R AE Sbjct: 143 VAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAE 202 Query: 183 YD--------SIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 + +KQ + +I NG I L D +MIGR A P Sbjct: 203 NRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE--VDGVMIGREAYANPLF 260 Query: 234 FREIQH----YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE 289 G KR+L ++ + +H++ Q Sbjct: 261 CAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGLFQG 320 Query: 290 HAPNDQFRRTFNAIEDASEQLEALEAYFE 318 ++RR + + A+E Sbjct: 321 QPGAKKWRRFLHENTRREGPIAAIEEALR 349 >UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=Desulfovibrio RepID=Q72EB7_DESVH Length = 332 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 145/315 (46%), Gaps = 4/315 (1%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESD-KSRLRM 58 M++G L AP+AG+ FR + +G GL + M ++ E+ +S Sbjct: 1 MQVGARTAPGSLWLAPLAGVGHVAFREVIDNLGGCGLLFTGMCNARAVPTENPARSNAFT 60 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 +E Q+ G+DP EMA+AAR G +DINMGC + R+ G+ LL+ Sbjct: 61 WRAEELERCVCQLFGADPSEMAEAARRVEAEGFFGVDINMGCSVAAIVRRGCGADLLRDE 120 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + ++ V AVD PV +K RTGW+P+ + +A+ ED G AL H R Sbjct: 121 ERAVRMVESVRRAVDCPVLVKFRTGWSPDPQGAVALARRFEDAGADALVFHPRVAPDRRT 180 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 IR VK+ V+IPV+ NG++ P A ++L+ TG D + +GR A GRPW+F Sbjct: 181 RPPLRHHIRLVKEAVAIPVLGNGEVFTPGDAASMLETTGCDGISLGRIALGRPWVFAAWT 240 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 +D P ++ L + H R+ +K + +++ + R Sbjct: 241 GLVDDNPASNPDLWRDIPLALLDALERRHA--DRKYAARLFKKFLLYFIANFTYGNSLRG 298 Query: 299 TFNAIEDASEQLEAL 313 +D ++ AL Sbjct: 299 PMLKGDDPADLRTAL 313 >UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0F5_DESRD Length = 341 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 145/322 (45%), Gaps = 9/322 (2%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDK-SRLRM 58 + IG L NR + +PM G+T R L ++ G GL +EM S++ + E + S + Sbjct: 13 LAIGDKSLTNRFLLSPMVGVTHVALRRLLHDFGGFGLHWTEMCSASAVLQEDPRISPVFR 72 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 H DE QI GS+P+ MA AAR + G +DINMGC V ++ AG+ALL+ Sbjct: 73 FHRDELATLVCQIMGSEPETMAAAARRIQDEGFFGVDINMGCCVAAVRQQGAGAALLRDI 132 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 +I+ V AVD+P+ +K+R+GW + A+ G AL +H R Sbjct: 133 SRAAAIVDAVRQAVDIPLFVKLRSGWTDQGPVVVHAARACAKAGADALIVHPRLAPDRRT 192 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 ++ IRAV + V +PV NG++ A A+L TG + +GR A RPWI E Sbjct: 193 RPPQWRDIRAVCEAVDLPVFGNGNVFTADDATAMLRQTGCQGIALGRMAAARPWIAAEWL 252 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 + P ++ V L + + R+ RK ++++ A + R Sbjct: 253 GHFHPAPETYP-------KVAQRMVELLWTSFPEGQALRLYRKFMNYFAANFAFGHRLRS 305 Query: 299 TFNAIEDASEQLEALEAYFENF 320 + + + + Sbjct: 306 DLTRSATPEDLYKEIAHHLTPL 327 >UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AKJ6_DESPS Length = 354 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 3/309 (0%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 L APM G++ R+L ++G GL +EM+++ E+ + Sbjct: 42 PPLSLAPMVGLSHSALRSLIADLGGCGLFYTEMLAARRLPHENPAVSSYLHTTPCERPLI 101 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q+ +D K +A A G +DIN+GCPA V R AG+AL + D V+ I++ Sbjct: 102 YQLFIADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSA 161 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 D+ ++ KIR G + + + ++ E G+ L +H R F + + + Sbjct: 162 RRHTDLTLSAKIRVGHVGKEAHLLDFCKMLEAEGVDLLAVHARYHGEKFCRKPRWQLLAP 221 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 + +++ IP+ ANG I AR L+ +GA LM+GR A RPW+F EI + +L Sbjct: 222 ICEQLDIPIFANGGIFSVDDARRCLELSGAAGLMLGRGAVERPWLFNEIAREVYGLDLPV 281 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 + V+++ + + P + ++ + + H E Sbjct: 282 AESRP--VEIYFRFVQKMVEIFAPERQLGRIKEFTHYIAKNHQFGHHLASAVQKSHTVEE 339 Query: 309 QLEALEAYF 317 ++A E ++ Sbjct: 340 AVQAAEDFY 348 >UniRef50_C2KNM7 Possible tRNA-dihydrouridine synthase n=4 Tax=Mobiluncus RepID=C2KNM7_9ACTO Length = 471 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 145/300 (48%), Gaps = 13/300 (4%) Query: 35 GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESG-AQI 93 G+ V EM+++ S++S + + ++++Q+ G +++A AA V G A Sbjct: 118 GMFVGEMVTAKALRMGSERSWVMVKSGPLQAVKSIQLYGVVGEDLAWAAGELVRRGLADH 177 Query: 94 IDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV-----------NAVDVPVTLKIRT 142 ID+N GCP KV RK GSAL ++ VV + VPVT+KIR+ Sbjct: 178 IDLNFGCPVPKVTRKGGGSALPWKTAYFGEVVAAVVAATRVASEDSGRSFPVPVTVKIRS 237 Query: 143 GWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 G EHR ++A++AED G+ A+T+H RT + + G + ++ I A+ + + IPV+ NGD Sbjct: 238 GIDAEHRIFLDVARVAEDNGVAAVTLHARTTSEYYGGHSHWEDIAALVEVLDIPVLGNGD 297 Query: 203 ITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAH 262 + A + TG + IGRA QGRPWIFREI L + L EV + H Sbjct: 298 VFCAADALEMFRETGCAGVEIGRAVQGRPWIFREITAALWGLPVPVGPSLGEVANVARRH 357 Query: 263 VRELHDFYG-PAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA 321 L YG R RKH+ WY + + R +E +E +A E Sbjct: 358 AEGLVAHYGNELVALRDMRKHLGWYFRGFGLGGEMRGRLARVESLAELEQATHELIERLG 417 Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 18/33 (54%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMG 33 + +G Q + APMA +T+ PFR LC E Sbjct: 22 LSLGGVQFVTPVALAPMADVTNAPFRDLCLEFS 54 >UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomycota RepID=DUS1_YEAST Length = 423 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 129/338 (38%), Gaps = 34/338 (10%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKS---RLRM 58 +IG R I APM ++ +R L GA L + M+ + + Sbjct: 25 KIG----RPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSL 80 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 VQ +DP+ + AA+ VE +D+N+GCP + GS L++ Sbjct: 81 DGSSVDRPLVVQFCANDPEYLLAAAK-LVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRAC--L 176 D++ +++ + + VPVT KIR + A++ D G Q LT+HGR R Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRI--FDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQ 197 Query: 177 FNGEAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 G A +++I+ ++ + ANG+I P +++ GADA+M P +F Sbjct: 198 KTGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVF 257 Query: 235 REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRI-ARKHVSWYLQEH-AP 292 + + ++ P + ++ +K + + H L+ Sbjct: 258 N-VGQTKNKEKIFP------RVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPH 310 Query: 293 NDQFRRTFNAIE---DASE--------QLEALEAYFEN 319 + R T + E + ++ FE Sbjct: 311 HTDIRSTLATMNAKATWEEWEEQVVKPVEKVVQEIFEQ 348 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 78/297 (26%), Positives = 123/297 (41%), Gaps = 11/297 (3%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R APM ++ FR LC GA L + M+ + V R Sbjct: 15 NPRYHVAPMVDQSELAFRELCKRYGATLGYTPMIHARLFVESPKYRREIFSTSTRDRPLL 74 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q +DP+ + AA + +DIN GCP + R G+ L+ V++++ ++ Sbjct: 75 AQFCANDPEILLRAATMI-APYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIRKL 133 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG--EAEYDSI 186 + VPVT KIR + + A++ E G Q + +HGRTR A + I Sbjct: 134 DEELPVPVTAKIR--VYDDLETTLKYAKMVEAAGAQIVAVHGRTREQKRCADIRANWAYI 191 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 RA+K + +PV+ANGDI +ARA L+ TGAD ++ P +F + Y + Sbjct: 192 RAIKDALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALFSDPPFYAAPTDG 251 Query: 247 LPPLPLAEV--KRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTF 300 P+PL V L+ + + + R HV + + R F Sbjct: 252 YAPIPLDGVAAVDLMIEYFDICKSY---TTSFSYIRGHVWKLVGHWMSEFTDLRDEF 305 >UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X346_9BACT Length = 355 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 8/276 (2%) Query: 14 AAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG 73 APM ++ P+R LC E+GA +TVSEM + + + + VQ+AG Sbjct: 1 MAPMTKGSNLPYRRLCVELGARITVSEMTLARRLKQKRNSEFALIRRFPGEPCFGVQLAG 60 Query: 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV- 132 + P E A AA + GA +DIN GCP RK G+++ + P ++ ++ + +V Sbjct: 61 NKPDETAWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVEAIKGSVT 120 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 ++PVT KIR GW + RN + AQ A D G AL +HGRTR + A++D+I + Sbjct: 121 NIPVTAKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTRNARYRFAADWDAIARIVAA 180 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 V +PVI NGD+ P + A + +G A+M+ RAA +PWIFRE + Sbjct: 181 VPVPVIGNGDLLFPHEIAAARERSGCAAVMVARAALIKPWIFREAVDGYW------DITA 234 Query: 253 AEVKRLLCAHVRELHDFYGPA-KGYRIARKHVSWYL 287 E L +V + +G G R ++W+L Sbjct: 235 EERVGLYRRYVTLAREHWGDDEHGLARIRTFLNWHL 270 >UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseriaceae RepID=C5TM05_NEIFL Length = 321 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 141/319 (44%), Gaps = 12/319 (3%) Query: 12 LIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMV------HIDEP 64 LI APM G+ D R L +G VSE + V + Sbjct: 3 LILAPMQGLVDDVMRDLLTRIGGFDECVSEFVRITHTVHSRATWLKYVPEIAHANRTTAG 62 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 TVQ+ GSD + MA A V GA ID+N GCPA VN+ G+ LL+ PD++ I Sbjct: 63 TPCTVQLLGSDAENMAVNALEAVRFGADKIDLNFGCPAPTVNKHKGGAVLLKEPDLIYHI 122 Query: 125 LTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAE 182 + + + +P+T K+R G+ + E A E+ G ALT+H RT+ + A Sbjct: 123 VHTLRQRLPQHIPLTAKMRLGYEDKSL-ALECASAIENGGACALTVHARTKVEGYEPPAH 181 Query: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 ++ +R ++ V+IPV ANGD+ + + +G +++M+GR A RP + R+I+ Y + Sbjct: 182 WEWVRKIRDAVNIPVTANGDVFNLQDYLDIKSVSGCNSVMLGRGAVIRPDLARQIKQY-E 240 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFY-GPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 GE + AEV + ++ + +E Sbjct: 241 NGETVKDTDFAEVSSWIVQFFDLCLAKEASNKYPVSRLKQWLGMMKKEFEQAQVLFDRIR 300 Query: 302 AIEDASEQLEALEAYFENF 320 AI++A E + L ++ + Sbjct: 301 AIKEADEVKQILLSFEQEM 319 >UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella RepID=Q5ZRM0_LEGPH Length = 329 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 10/322 (3%) Query: 1 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEM-GAGLTVSEMMSSNPQVWESDKSRLRMV 59 ++IG +L +RLI P+AG + PFR L VSEM S+ + + + Sbjct: 10 LQIGSLKLPHRLIQGPLAGYSCAPFRDLFNIYTPPAYCVSEMCSAIDILHKHSSQSRYIY 69 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 QI+G++P +A+AA GA +IDIN GCP K+ +K AGSALL+ P Sbjct: 70 RAPTEKFLAYQISGNEPHVLAEAAAKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQ 129 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179 + +I++ V A+ +P+T+KIR + +A+ ED G AL +HGR ++ Sbjct: 130 KLIAIISRVRAAISIPLTIKIRI---QNNEKDLTLAKQIEDAGAHALIVHGRRWTEDYDI 186 Query: 180 EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + I +K V+IPVI NGDI + R L+ + D MI RA G+PW++R++ + Sbjct: 187 PCNWQQIANIKNAVNIPVIVNGDINNIFSLRKALEISACDGFMISRAGTGKPWLYRDLLN 246 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 E +L H+ L K ++ V +Y ++ Q + Sbjct: 247 LETNDVA-----FDEKLKLFMLHLEGLSCLENEYKAVLQSKSLVRYYFKKQLNEQQL-QQ 300 Query: 300 FNAIEDASEQLEALEAYFENFA 321 F + E + L + Sbjct: 301 FYQLGSLMEIKDFLAEATHRVS 322 >UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypanosoma cruzi RepID=Q4DCG2_TRYCR Length = 529 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 11/286 (3%) Query: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 +N+L+ AP+ + + PFR +C GA +TVS M + + + + Sbjct: 168 FKNKLVLAPLTTVGNLPFRRVCKSYGADITVSSMSLVHNLNRLQKGEWSLLRRHESEDVF 227 Query: 68 TVQIAGSDPKEMADAARINVESGA--QIIDINMGCPAKKVNRKLAGSALLQYPD-VVKSI 124 +QIA S P+ A+ SG IDIN GCP + + G L + D ++ I Sbjct: 228 GLQIAVSQPQSAQTWAKAIEASGYSYDFIDINCGCPVQMIMSAGCGCGLWERRDNRLRDI 287 Query: 125 LTEVVNAVDVPVTLKIRTG-WAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEY 183 ++ +V PV++K R G A + E E G A+TIHGR RA + A + Sbjct: 288 VSSLVQHQSKPVSIKCRIGAGANSSASLHEKIGDYEGWGADAVTIHGRFRAQRYTKLANW 347 Query: 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLD-YTGADALMIGRAAQGRPWIFREIQHYLD 242 + I + + S+PVI NGDI + Y + MIGR A +PWIF EI+ Sbjct: 348 EYIDSCAARTSLPVIGNGDIFSYEDIIDHRERYPHVSSYMIGRGALIKPWIFEEIKQ--- 404 Query: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 E + E +L + +G +G R+ + +L Sbjct: 405 --EQPRDISSQERFEMLRSFCNYGLSHWGSDERGVLTTRRFLCEWL 448 >UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammaproteobacteria RepID=DUSA_VIBVU Length = 326 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 125/329 (37%), Gaps = 23/329 (6%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 RL APM TDR R M L +EM+++ + + + E Sbjct: 1 MTHSCRLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGD---FLAYNQEE 57 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +Q+ GS+P+++A A++ E G +++N+GCP+ +V G+ L+ P +V Sbjct: 58 HPVALQLGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADC 117 Query: 125 LTEVVNAVDVPVTLKIRTGWA--PEHRNCEEIAQLA-EDCGIQALTIHGRTRACLFNGEA 181 + + VD+PVT+K R G + + + E G + TIH R Sbjct: 118 VAAMKEVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPK 177 Query: 182 EYDSIRAV---------KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 E I + K + + NG + +A+ L + D +MIGR A P+ Sbjct: 178 ENREIPPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH--LDGVMIGREAYQSPY 235 Query: 233 IFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP 292 + + L + P+ + ++++ + +H+ Q Sbjct: 236 LLASVDQELFGSQS----PIKKRRQIVEEMYPYIEQQLANGAYLGHMTRHMLGLFQNMPG 291 Query: 293 NDQFRRTFNA-IEDASEQLEALEAYFENF 320 Q+RR + +E L+ Sbjct: 292 ARQWRRHISENAHKPGSGIEVLQQALAKI 320 >UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4PG83_USTMA Length = 527 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 138/363 (38%), Gaps = 48/363 (13%) Query: 2 RIGQYQL-----RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRL 56 ++G ++ R + APM ++ +R L G+ L + M+++ E+ K + Sbjct: 36 KMGSWEFYRSIGSPRRVVAPMVDQSELAWRILSRRYGSDLVYTPMINAKLFADENSKKKK 95 Query: 57 -----------------------------RMVHIDEPGIRTVQIAGSDPKEMADAARINV 87 D VQ +DP+ + AA++ Sbjct: 96 VKYQEVNFNREHAEEGASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLKAAKVVE 155 Query: 88 ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPE 147 + +D+N+GCP R GS L++ ++ S++ + + VPVT K+R Sbjct: 156 DR-CDAVDLNLGCPQHIARRGHYGSYLMEDWSLIFSLINILHVNLKVPVTAKMR--VYES 212 Query: 148 HRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSIRAVKQKVSIPVIANGDITD 205 A+L E G Q +T+HGRTR G A++ IRAVK+ V++PV ANG++ Sbjct: 213 VEKTITYARLLERAGAQIITVHGRTRNMKGHLTGLADWAKIRAVKEAVNVPVFANGNVLY 272 Query: 206 PLKARAVLDYTGADALMIGRAAQGRPWIF--REIQHYLDTGELLPPLPLAEVKRLLCAHV 263 P L TGAD +M P I + P LPL + ++ ++ Sbjct: 273 PQDFYDALAATGADGVMSAEGNLYNPAIMLPNPPKQPSAMFPNAPELPLPSIVKMAHEYL 332 Query: 264 RELHDFYGPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIE-----DASEQLEALEAYF 317 + P + + H+ + + R ++++ A+ Sbjct: 333 DIVCSLRTPTQS-SAIKAHLFRLCRPALEVHRDLREQLGKSHFDHTASGADKIVTYRAFV 391 Query: 318 ENF 320 + Sbjct: 392 DEL 394 >UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU09_9BACT Length = 334 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 133/328 (40%), Gaps = 28/328 (8%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEM----GAGLTVSEMMSSNPQVW--ESDKSRLRMVHID 62 + APM +TD FR + E + SE +S++ DK R + D Sbjct: 10 SPGIALAPMEDVTDTVFRQILLETAQPKNLQVVFSEFISTDGLCHPIGHDKVIHRFLISD 69 Query: 63 EPGI--------RTVQIAGSDPKEMADAARINVES-GAQIIDINMGCPAKKVNRKLAGSA 113 E Q+ G +P + ++A V+ +DINMGCP K+ ++ SA Sbjct: 70 EERKLLKEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQGGCSA 129 Query: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTR 173 L+ P++ K ++ A +PV++K RTG H+ E + L E A+ +HGRT+ Sbjct: 130 LINTPEIAKELVLAAKAATKLPVSVKTRTGITA-HKTEEWMTHLLEVEPA-AIILHGRTQ 187 Query: 174 ACLFNGEAEYDSI---RAVKQK--VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 G A +D I V+ + IP NGD+ +A + D MIGR Sbjct: 188 KQQSEGLASWDEIAKGARVRDRLKPHIPFWGNGDVRSIEQAHQLCQEHKLDGAMIGRGVF 247 Query: 229 GRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 PWIF L +LPP E LL H F+G K + R+ Y Q Sbjct: 248 HNPWIFN---TDLLGDNVLPP---EEKIALLWRHASLYTSFWGSQKNFLTLRRFFKIYAQ 301 Query: 289 EHAPNDQFRRTFNAIEDASEQLEALEAY 316 + FR + E LE + Sbjct: 302 GFPGANAFRSEIMQTKKLDEVRALLEKH 329 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 18/319 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDK------SRLRMVHIDE 63 R+I APM G+ D R + ++G VSE + N + + Sbjct: 2 RIILAPMEGLLDFRLREILTQIGGYDECVSEFIRVNDTLLPPHRFFRTAPELKNSSRTKS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +QI GSDP MAD A + GA IDIN GCPA VNR G+ALL+ P+++ S Sbjct: 62 DTPVKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLKEPNLMYS 121 Query: 124 ILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ V N V +PVT K+R G+ + A+ E+ G + + +H RT+ + A Sbjct: 122 IVKAVRNVVPENIPVTAKMRLGY-ESTELALDCAKALEEGGAKEIVVHARTKTDGYKPPA 180 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 ++ I +K + I VIANG+I A +G D +MIGR A P I I+ L Sbjct: 181 YWEWIAKIKSILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRGAVTNPSIALLIKKKL 240 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 + + + K +L ++ + ++ + + +E+ + Sbjct: 241 E-----ERMSWQKTKEVLSSYWLSMEPDVEAVSRVGRIKQWLHYLSREYEEAQIDFQKIK 295 Query: 302 AIEDASEQLEALEAYFENF 320 I + + YF Sbjct: 296 RISNPKDFELI---YFSEL 311 >UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteria RepID=DUSA_SHEON Length = 335 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 67/308 (21%), Positives = 120/308 (38%), Gaps = 21/308 (6%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 L APM TDR +R M A L +EM+++ + + + E Sbjct: 11 NLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDY---LTYNQEEH 67 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 +Q+ GS+P E+A A++ E G +++N+GCP+ +V G+ L+ P++V + Sbjct: 68 PLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECV 127 Query: 126 TEVVNAVDVPVTLKIRTGWA--PEHRNCEEIAQLAEDCGIQALTIHGRT--------RAC 175 + VD+PVT+K R G + G IH R + Sbjct: 128 DAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKEN 187 Query: 176 LFNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 +YD + +K+ + + NG IT +A+ L + D +M+GR A P++ Sbjct: 188 REIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH--LDGVMVGREAYQNPYML 245 Query: 235 REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPND 294 ++ L G + V + ++ G +H+ Q Sbjct: 246 AQVDQVL-CGSTKAVMSREAVIEAMLPYIEAHLQVGGR---LNHITRHMIGLFQGLPGAR 301 Query: 295 QFRRTFNA 302 +RR + Sbjct: 302 AWRRYLSE 309 >UniRef50_Q6C4K2 YALI0E26059p n=1 Tax=Yarrowia lipolytica RepID=Q6C4K2_YARLI Length = 359 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 118/312 (37%), Gaps = 19/312 (6%) Query: 7 QLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGI 66 Q + +A PM + PFR L + S MM + + Sbjct: 41 QGKTVTVAGPMVRYSKLPFRALVRHFDCDVVYSPMMLAREFCRNQTARLCDFTTNKDDFP 100 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQ+ G++ ++M A ++ + + IN GCP K+ R+ G+AL+ PD+V ++ Sbjct: 101 LIVQLGGNNAEDMVKAVKML-QPYVDGVGINCGCPIKEQIREGVGAALMTAPDLVAEMVA 159 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + + ++++ + + A+L E G ++++HGR YD I Sbjct: 160 AIRKECGAEIYVEVKMRIHKDLNDTVHFAKLVEAAGADSISVHGRLVPQRSRTAPNYDGI 219 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 + VK V +PVIANGD +++ TG D +M R P +F Sbjct: 220 KIVKDSVDVPVIANGDAFTTTNIEEIVELTGCDGVMAARGILSNPAMFAG---------- 269 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDA 306 P V + YG I H S L+ ++ N ++ Sbjct: 270 YTKTPWRAV-----ELFWDYVTAYGLPYALTI--HHFSEMLEAEL-TRYEKKDLNNCKNM 321 Query: 307 SEQLEALEAYFE 318 E + + F+ Sbjct: 322 VELINWFDDRFD 333 >UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicrobia RepID=B9XLX7_9BACT Length = 340 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 133/312 (42%), Gaps = 4/312 (1%) Query: 10 NRLIAAPMAGITDRPFRTLCYEM-GAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 L APM +TD PF + A + +E + + Sbjct: 7 PILALAPMQDVTDLPFMKVISSYGSADVYYTEYFRVHGSSNLEKWILESITKNPTGQPVI 66 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q+ G+D + +A+ + +D+N+GCPA V RK AG LL+ P V SIL + Sbjct: 67 AQMIGNDIPSLVRSAKELQQYPIVAVDLNLGCPAPIVYRKCAGGGLLREPKRVDSILGAL 126 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 +A+ V T+K R G+ +E+ + I LT+HGRT ++ E YD I Sbjct: 127 RDAISVKFTVKTRIGFDSTG-VFDELLPIFAKHSIDLLTVHGRTVQEMYRSEVHYDFIAR 185 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 Q VS PV+ANG++ KA VL +TGA LMIGR PW+F +I+H+ GE + Sbjct: 186 AAQAVSCPVLANGNVYSAKKAEEVLQFTGARGLMIGRGVIRNPWLFHQIRHHRR-GEPIF 244 Query: 249 PLPLAEVKRLLCAHVRELH-DFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS 307 +V + + + + +K++++ P QF Sbjct: 245 IPKGHDVLQYIRTLYDAVRPPDIRELAQVQKMKKYLNYVGLGVEPTGQFLHQIRRATSEV 304 Query: 308 EQLEALEAYFEN 319 E + E Y + Sbjct: 305 EFFKICEDYLNH 316 >UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DS92_ZYGRO Length = 406 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 128/318 (40%), Gaps = 23/318 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP---- 64 + I APM ++ +R L + GA L + M + + +D Sbjct: 18 KPTKIVAPMVDQSELAWRILSRKYGATLAYTPMFHAKLFATSPKYRKDMWCEMDGDSKID 77 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 VQ +DP+ + AAR+ + +D+N+GCP + GS L++ D+V + Sbjct: 78 RPLVVQFCANDPEYLLQAARLVQD-KCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKL 136 Query: 125 LTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF--NGEAE 182 + + +DVPVT KIR PE + A+ D G Q LT+HGR R +G A+ Sbjct: 137 IRNLHENLDVPVTAKIRI--FPEKEKSLQYARTVLDAGAQFLTVHGRLREQKGQQSGLAD 194 Query: 183 YDSIRAVKQK--VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +++I+ ++ +NG++ P +D DA+M P IF + Sbjct: 195 WETIKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSAEGNLYNPGIFN-AEDS 253 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRI-ARKHVSWYLQEH-APNDQFRR 298 D ++ P ++C E+ Y + R + H+ L+ + R Sbjct: 254 QDKEKVFP------RVDVICREYFEIVKSYEFSHASRTAMKSHLFKILRPFLPNHTDIRS 307 Query: 299 T---FNAIEDASEQLEAL 313 + NA + A+ Sbjct: 308 SLALLNAKSSLDDYENAV 325 >UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGI3_9GAMM Length = 313 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 135/313 (43%), Gaps = 16/313 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESD------KSRLRMVHIDE 63 ++ APM G+ D R L +G L V+E + + Sbjct: 2 KITLAPMEGVMDHHMRALLTSLGGIDLCVTEFIRVISLTLPAKVYRRVSPELFNQSKTPS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 +Q+ G DP+ +A+ AR + G+ ID+N GCPAK VN+ G+ LL+ P+ + Sbjct: 62 GTPVRIQLLGQDPQCLANNARKALLVGSDGIDLNFGCPAKAVNKSKGGAILLKSPETLYK 121 Query: 124 ILTEVVNAVDV--PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEA 181 I+ EV ++ +++KIR G+A + E AQ + G L +H RT+ + A Sbjct: 122 IVKEVRASMHTCETLSVKIRLGYADKSL-AIENAQAICEAGANELAVHARTKEEGYAPPA 180 Query: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 + I +++ + IPV ANGDI A+ + +G +LMIGR A P + + I+ Sbjct: 181 HWHWIAKIRESIDIPVTANGDIFSAEDAKRCHEISGCHSLMIGRGALATPNLAQVIKGIE 240 Query: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN 301 P ++ L+ ++ ++ +++ + F + Sbjct: 241 ------EPYSWPQILTLMSQYLIVQTHGDKEKYLPSRIKQWLTFMRLQQPQALIFLQAVR 294 Query: 302 AIEDASEQLEALE 314 I+ E + A+E Sbjct: 295 KIKSTQEMIHAIE 307 >UniRef50_Q22A31 TIM-barrel protein, yjbN family n=2 Tax=cellular organisms RepID=Q22A31_TETTH Length = 466 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 130/337 (38%), Gaps = 24/337 (7%) Query: 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEM-GAGLTVSEMMSSNPQVWESDKSRLRMVHI 61 I + APM ITD FR + + +EM+ + + Sbjct: 82 IANINYHT-IAVAPMIDITDVHFRNFIRLLTRYSILYTEMIHEQAVHHNIRGPQEFLRFD 140 Query: 62 DEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVV 121 +Q+ G+DP +A AA+I E G +++N+GCP+ +V G+ L++ P++V Sbjct: 141 PVQHPVVIQLGGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQSGKFGACLMKEPELV 200 Query: 122 KSILTEVVNAVDVPVTLKIRTGWA--PEHRNCEEIAQLAEDCG-IQALTIHGRT------ 172 I+ ++ A +PVT+K R G + + + + G +Q +H R Sbjct: 201 AEIMRKMKEACSIPVTVKCRLGVDNFDSYEFARDFIKTVSEKGQVQHFVVHARKAFLKGL 260 Query: 173 --RACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVL-DYTGADALMIGRAAQ 228 +YD + +KQ+ + NG + +L G M+GRAA Sbjct: 261 NPAQNRNVPPLKYDYVLRLKQEFPHLHFSINGGFKTYDQISDILKQENGLHGCMLGRAAY 320 Query: 229 GRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ 288 PW+F ++ G+ P E+ ++ + + + PA K + Sbjct: 321 ETPWLFSDMDRRYF-GKQNPGFSRREILQIWGQYGKLVIQQ-QPAISIPTLNKPIINLFA 378 Query: 289 EHAPNDQFRRTFN------AIEDASEQLEA-LEAYFE 318 + ++R + E+ ++ +E Y + Sbjct: 379 GEKHSAKYRHFISDRANFVKFENYEVFMQKTIEEYEQ 415 >UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine synthase 4-like (PP35) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179183B Length = 350 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 25/304 (8%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 I APM + FR L L + M+ ++ V + + VQ Sbjct: 20 ICAPMVRYSRLQFRKLIRMYECDLCFTPMIMADCYVKSAKARAHEFQTDTDDRPLIVQFG 79 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 ++ + +A+ + + +D+N GCP + + G+ LL+ P+++K + ++ N + Sbjct: 80 ANNSSDFVNASNLII-PYCDGVDLNCGCPQRWALNEGYGAQLLKNPEIIKDCVRQLRNHL 138 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 T+ ++ +HR ++ Q E G+ +T+HGRT N + + ++ + + Sbjct: 139 PTNKTISVKLRLLDDHRQSVDLCQQIEATGVSFITVHGRTALQK-NEPIDQECLKLINES 197 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 VS+PVI NGDI + A + +YTG +M R P +F Q PL Sbjct: 198 VSVPVILNGDIKNLSDAITMQEYTGCRGMMSARGILHNPGLFAGYQT----------TPL 247 Query: 253 AEVKRLL-CAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311 + V+ L H L H+ + + P R+TFN + AS+ + Sbjct: 248 SAVQDWLNIKHTNFLW-----------FHHHLVFMCERLLPKTA-RKTFNQLRTASDVVS 295 Query: 312 ALEA 315 LE Sbjct: 296 FLED 299 >UniRef50_B6JXB4 tRNA-dihydrouridine synthase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JXB4_SCHJY Length = 347 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 124/309 (40%), Gaps = 21/309 (6%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R IAAPM + PFR L + A + + M+ + + + ++ Sbjct: 19 RPVFIAAPMVRYSKLPFRQLVRDYNADIVYTPMILAKEFLHP-EGRYFDFSTNEKDRSLV 77 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ DP +A A+ I V I IN GCP ++ GSALL+ P V ++ V Sbjct: 78 VQFGVEDPVILAQASEI-VAPYTDAIGINCGCPQPWAIQEGIGSALLKQPQKVHELVRSV 136 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 +A+ ++++ + ++ Q AE G +T+HGR RA + + ++IR+ Sbjct: 137 KSALGETFCVEVKIRLDNDLEKTRQLMQTAERAGADFITVHGRRRADRSSFPVDLEAIRS 196 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V+ VSIPV+ANGD+ D + +YT D +M R P +F Sbjct: 197 VRPCVSIPVVANGDVNDLDTGLKIAEYTNTDGVMSARGLMENPALFAG----------YT 246 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P V++ + +F +H + + R E + Sbjct: 247 STPWGCVEKFVAYATGYSLNF--------QLFEHHLMTMMGKMTTKRERMQV-PSESYAS 297 Query: 309 QLEALEAYF 317 ++ L+ F Sbjct: 298 VIDWLDETF 306 >UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosaccharomyces pombe RepID=DUS1_SCHPO Length = 399 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 123/318 (38%), Gaps = 19/318 (5%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM--V 59 +IG R + I APM ++ P+R L GA L S M S D Sbjct: 14 KIG----RPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTR 69 Query: 60 HIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPD 119 I E +Q G+DP+ M AA+I +D+N+GCP + GS L + + Sbjct: 70 TIPEERPLIIQFCGNDPEIMLKAAKIA-APYCDAVDVNLGCPQGIAKKGKYGSFLQENWN 128 Query: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL--F 177 +++SI+T++ + +PVT KIR P+ + + A++ G L +HGR R F Sbjct: 129 LIESIITKLHTELSIPVTAKIRI--FPDPQKTLDYAKMILKAGASILAVHGRLREQKGHF 186 Query: 178 NGEAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 G A+++ I+ +++ + + ANG+I + YTG D ++ + P IF Sbjct: 187 TGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFL 246 Query: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAP-ND 294 L T E ++ + H+ ++ + Sbjct: 247 PPSSPLMTLYPRIDDMCEEYLNIIREF-----KLESDYSSLSAIKGHLFKLMRPLLSIHT 301 Query: 295 QFRRTFNAIEDASEQLEA 312 R + Sbjct: 302 DIRSKLAQGCTPRDFETF 319 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 78/317 (24%), Positives = 130/317 (41%), Gaps = 23/317 (7%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLR--MVHIDEPGI 66 R APM G ++ +R L GA + +EM+ + + S + Sbjct: 10 RPYFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWYTTSEGDRP 69 Query: 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILT 126 VQI G+ P+ M +AA I + ID+N GCP K + G+ L + + I+ Sbjct: 70 LVVQICGNSPEVMLEAALIIQD-HCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIVK 128 Query: 127 EVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYD 184 + + ++VPV KIR E A++ E+ G L +HGRTR G A + Sbjct: 129 VLSSGLNVPVFCKIR--VFGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAMGFASWK 186 Query: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 IRA+K+ + IPV++NG+I L+YTG D +M+G A P IF Sbjct: 187 HIRAIKENLRIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLIFTGEDRSC--- 243 Query: 245 ELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR-TFNAI 303 ++ ++ +F G A R + H+ L + + ++ ++ Sbjct: 244 -----------LEIIGEYLDICMEFPGSA-DVRHIKSHMFRLLYNYFSMNPGKQPDLDSC 291 Query: 304 EDASEQLEALEAYFENF 320 + E + E Sbjct: 292 GSVEKFYEFYLSLVEEM 308 >UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales RepID=B1XI00_SYNP2 Length = 344 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 20/311 (6%) Query: 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEM-GAGLTVSEMMSSNPQVWESDKSRLRMVH 60 RI + L APM TDR FR L + L +EM+++ + L Sbjct: 4 RINTVVCPHLLSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRPKLLDFDA 63 Query: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV 120 ++Q+ G +PKE+A+ A++ + G I++N+GCP+ +V + G+ L+ P++ Sbjct: 64 A--EHPISLQLGGDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPEL 121 Query: 121 VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCE--EIAQLAEDCGIQALTIHGRT------ 172 V + + AV++PVT+K R G + + ++ G ++H R Sbjct: 122 VADCVAAMQGAVNIPVTVKHRIGVDEQDSYADLCRFIEIVSATGCDRFSVHARKAWLQGL 181 Query: 173 --RACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 + Y + +KQ + + NG IT + L T DA+M+GRAA Sbjct: 182 SPKENRTVPPLRYADVYRLKQDFPHLWIEINGGITTLEHIQTHL--TQVDAVMVGRAAYD 239 Query: 230 RPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE 289 P++F + + GE + P E+ + ++ +H+ Sbjct: 240 NPYLFATVDRDIY-GEAIQPKSRHEIVEEMLPYIERATKAGVKLHSIS---RHMLSLFLG 295 Query: 290 HAPNDQFRRTF 300 ++R Sbjct: 296 QPGTKAWKRFI 306 >UniRef50_A1AW94 TIM-barrel protein, yjbN family n=2 Tax=Gammaproteobacteria RepID=A1AW94_RUTMC Length = 322 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 21/322 (6%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGL-TVSEMMSSNPQVWESDKSRLRMVHIDEP 64 ++ APM TDR R + + +EM+++ ++ + L Sbjct: 1 MNYHSKFSVAPMMDWTDRHCRYFYRLISKNVQLWTEMVTARAILYGNKNRLLDFNVC--E 58 Query: 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSI 124 +Q+ GS+PKEMA AA+I + G I+IN+GCP+ +V G L+Q P VV Sbjct: 59 HPLVLQLGGSEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQTPQVVAQC 118 Query: 125 LTEVVNAVDVPVTLKIRTGWA--PEHRNCEEIAQLAEDCGIQALTIHGRT--------RA 174 + + VDVP+T+K R G + E G L IH R + Sbjct: 119 VDAMRQMVDVPITVKSRIGVDNMDSYDELVNFVATVESSGCDNLVIHARKAWLKGLSPKE 178 Query: 175 CLFNGEAEYDSIRAVK-QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 + Y+ + +K + + NG I D + L++ D++M+GRA +P++ Sbjct: 179 NRSVPKLNYERVYQIKRDFPHLAIGINGGIMDMESSLQHLEH--VDSVMLGRAVYHQPYL 236 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPN 293 R++ + + +++L A + + + + R +H+ Sbjct: 237 LRKVDGLI----YQKKSSILSREQVLLAFIEYMKVQHANSVLIRSMTRHIFGLYHGQKNA 292 Query: 294 DQFRRTFN-AIEDASEQLEALE 314 +F+R + I E LE Sbjct: 293 KKFKRLLSGKIVKFEHLYEWLE 314 >UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammaproteobacteria RepID=DUSC_VIBCH Length = 323 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 82/320 (25%), Positives = 138/320 (43%), Gaps = 17/320 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVH------IDE 63 R+I PM G+ D R + ++ V+E + + Sbjct: 2 RVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTPS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ G DP MA+ A E GA ID+N GCPAK VN+ G+ALLQ+P+++ Sbjct: 62 GVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQ 121 Query: 124 ILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN-GE 180 ++ +AV +PV+ KIR GW + +C EI LT+H RT+A + E Sbjct: 122 VVKACRDAVPAHIPVSAKIRLGW-EDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASE 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 ++ I ++QK SIP+IANG++ + +A + TG D+LM+ R A P + ++H Sbjct: 181 IKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNLGNVVKHN 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +P EV LL + + ++ ++ + ++ Sbjct: 241 HA------AMPWHEVVDLLLRYTQFEVRGDKGKYYPNRIKQWFAYLRHAYPQANELFGEL 294 Query: 301 NAIEDASEQLEALEAYFENF 320 + ++ L Y + Sbjct: 295 RTLTQVEPIVDQLHRYRDQL 314 >UniRef50_UPI00015B403F PREDICTED: similar to MGC79829 protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B403F Length = 346 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 129/306 (42%), Gaps = 20/306 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 + APM + PFRTL + + + M+ ++ V S + VQ A Sbjct: 17 VCAPMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFSTNEGDSPLIVQFA 76 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 + + +A + V + +D+N GCP + + G+ LL P +VK +++ V N + Sbjct: 77 AKEVDDFVEATEM-VAPYSNGVDLNCGCPQRWALKDGYGADLLTKPQLVKELVSNVRNRI 135 Query: 133 DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK 192 P T+ ++ + + E ++ E G+ LT+H RT N + DS++ V+ Sbjct: 136 PKPFTVSVKIRILKDIKKTIEFSRAIEHAGVSFLTVHARTPDMR-NEPIDLDSLKLVRSC 194 Query: 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPL 252 V +P+IANG++ A+ + + + + +M+ P IF ++ P+ Sbjct: 195 VHLPMIANGNVRSFEDAKTLYEESKCNGVMVAGGILTNPAIFSGYKN----------TPV 244 Query: 253 AEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEA 312 ++ L F H+ + L++ + + FN + + S+ + Sbjct: 245 ECIQDWLDITSTMSTQFM-------CMHHHLVFMLEKVL-TKKEKLVFNVLNNKSDVYDF 296 Query: 313 LEAYFE 318 L+ F+ Sbjct: 297 LKERFD 302 >UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria RepID=D0LY25_HALO1 Length = 376 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 75/322 (23%), Positives = 124/322 (38%), Gaps = 21/322 (6%) Query: 12 LIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 L APM TDR FR ++ L +EM+ + + L + +Q Sbjct: 42 LSVAPMMECTDRHFRYFLRQISRHTLLYTEMIVTGTIIHGDRPRYLDF--SEAEHPIALQ 99 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 + G D + +A ARI + G +++N+GCP+ +V+ G+ L+ P+VV + + Sbjct: 100 LGGDDAEALATCARIAEDWGYDEVNLNVGCPSSRVSSGSFGACLMARPEVVARAVEAMRA 159 Query: 131 AVDVPVTLKIRTGWAPEH--RNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 AV +PVT+K R G + E ++ + G ++H R E + Sbjct: 160 AVAIPVTVKHRIGIDDRDRYEDMREFVRVVAEAGADRFSVHARKAWLSGLSPKENREVPP 219 Query: 189 V---------KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 + ++ +P+ NG I D A+ L + DA+MIGRAA PWIF E Sbjct: 220 LRYADVHRLKREFPHLPIEINGGIVDLDSAQEQLAH--VDAVMIGRAAYNTPWIFAEADA 277 Query: 240 YLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRT 299 G + P V + +V G +H+ +RR Sbjct: 278 RFF-GSVAPTPTQTAVVEAMIDYVE---AQRGRGVPLHRITRHMFQLFAGQRGARGWRRY 333 Query: 300 FN-AIEDASEQLEALEAYFENF 320 + E L + F Sbjct: 334 LTEQAKSRDAGPEVLRVALDRF 355 >UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammaproteobacteria RepID=DUSC_ECOLI Length = 315 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 147/316 (46%), Gaps = 17/316 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYE-MGAGLTVSEMMSSNPQVWESDKSRLRMV------HIDE 63 R++ APM G+ D R L E L ++E + Q+ Sbjct: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQ+ G P+ +A+ A VE G+ +D+N GCP+K VN G+ LL+ P+++ Sbjct: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 Query: 124 ILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN-GE 180 + AV +PV++K+R GW + EIA + G L +HGRT+ + Sbjct: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 ++ +I ++Q+++IPVIANG+I D A+ + +G DA+MIGR A P + R +++ Sbjct: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 P +P EV LL + R ++ +S+ +E+ + + Sbjct: 241 E------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 Query: 301 NAIEDASEQLEALEAY 316 + ++ + A++A Sbjct: 295 RVLNNSPDIARAIQAI 310 >UniRef50_Q7QCT0 AGAP002791-PA (Fragment) n=3 Tax=Culicidae RepID=Q7QCT0_ANOGA Length = 396 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 121/308 (39%), Gaps = 20/308 (6%) Query: 13 IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA 72 I APM + FR L G L + M+ ++ +E Q A Sbjct: 26 ICAPMVRYSKLEFRHLVRSYGTDLAFTSMIMADSFCKSEKARLNEFTTNEEDTPLIAQFA 85 Query: 73 GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV 132 ++ + A+ + +D+N GCP + + GSALL+ P+++ +L V + Sbjct: 86 ANNTIDFLSASEMVY-PYVDGVDLNCGCPQRWAMAEGYGSALLKTPELIADMLGTVRRNM 144 Query: 133 D--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVK 190 V++K+R + +H+ ++ + E GI LT+HGRT + D+++ +K Sbjct: 145 PSTFSVSVKVRLLSSTDHKRTIDMCRQLEATGITFLTVHGRTAPEMTKVPVHKDALQEIK 204 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 Q + IP++ANGDI A + T D +M R P +F G P+ Sbjct: 205 QSIGIPMVANGDIFTLDDAEQMYLQTKCDGVMTARGILSNPALFA--------GHSSTPV 256 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNA-IEDASEQ 309 + +C + + H S+ + + R N ++ + Sbjct: 257 ECVKRWLNICQQADTDITY-------QCMHHHFSFMTESLL-TKRLRYELNNLSKEKQKV 308 Query: 310 LEALEAYF 317 E ++ + Sbjct: 309 YEFIQTHL 316 >UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammaproteobacteria RepID=DUSC_VIBPA Length = 322 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 148/320 (46%), Gaps = 17/320 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVH------IDE 63 R++ PM G+ D R + E+ L V+E + QV Sbjct: 2 RVVLGPMEGVLDHLMRQILTEINDYDLCVTEFVRVIDQVLPDHVFHRLCPELMQGSQTTS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ G +P MA+ A E GA+ ID+N GCPAK VN+ G+ALLQ+P+++ S Sbjct: 62 GVPVHVQLLGQEPHWMAENAIRAAELGARGIDLNFGCPAKMVNKSKGGAALLQHPELIHS 121 Query: 124 ILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN-GE 180 ++ +AV +PV+ KIR GW +C EI + G LT+H RT+ + E Sbjct: 122 VVKACRDAVPANIPVSAKIRLGW-ENPEDCFEIVDAIQSAGANELTVHARTKQGGYKASE 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 +++ I ++++ SIP+IANG+I + + ++ TG D+LM+ R A P + ++H Sbjct: 181 IKWEYINKIRERFSIPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNIPNLGNMVKHN 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 P+ ++V LL + + ++ ++ Q + ++ R Sbjct: 241 H------TPMVWSDVVDLLIYYSKFEMKGDKGLYYPNRVKQWFAYLRQSYPEANELFREI 294 Query: 301 NAIEDASEQLEALEAYFENF 320 A+ +E ++ Y + Sbjct: 295 RTFNKAAPIVEHIQRYRDEL 314 >UniRef50_UPI000186DA49 tRNA-dihydrouridine synthase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DA49 Length = 332 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 129/316 (40%), Gaps = 22/316 (6%) Query: 1 MRIGQYQLRNRLI--AAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM 58 M + + +L+ APM + FR+L + L + M+ ++ + Sbjct: 1 MSVSDLFSKKKLVKVCAPMVRYSKLEFRSLVRQYDCDLCFTPMIMADSFIKSEKARINEF 60 Query: 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 VQ A ++ + ++AA+ V + +D+N GCP + + G+ LL P Sbjct: 61 TTSSNDSPVIVQFAANNTFDFSEAAK-LVFPFSDGVDLNCGCPQRWAMKIGIGAQLLSEP 119 Query: 119 DVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN 178 + +K I+ V N + ++ ++ + ++ ++ + E G+ LTIHGRT+ + Sbjct: 120 ETIKDIVLNVKNQISCNYSVSVKLRLLNDIKSTVDLCKKLEKTGVTFLTIHGRTKEQR-S 178 Query: 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 +I+ + V IP+IANGD+ A+ + TG +M R P +F+ Sbjct: 179 EPVNIAAIKDIVDSVQIPIIANGDVKTLQDAQLLQQLTGCQGVMSARGLLQNPSLFQGYN 238 Query: 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRR 298 PL VK + + + H+ + L++ P + RR Sbjct: 239 E----------TPLECVK-------KWVDISLNSNIHFTTFHHHLVFMLEKILP-KKIRR 280 Query: 299 TFNAIEDASEQLEALE 314 FN + + + + E Sbjct: 281 KFNCLNNYEDPFKLYE 296 >UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C4H3_THAPS Length = 333 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 119/314 (37%), Gaps = 12/314 (3%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH---IDEPGIRTVQI 71 APM +D P+R L L + M+ + + + + Q Sbjct: 1 APMVDASDLPYRLLTRRYNTSLCFTPMIHAKMFIDKPKYREKFWKIEGMPSQDRPLIAQF 60 Query: 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP--DVVKSILTEVV 129 G D + A ++ E +DIN GCP R G+ L++ D + I+ + Sbjct: 61 CGHDKNVLLQAMKVL-EPHVDGVDINCGCPQNIAKRGRYGAFLMEEDNGDKIVEIVQHLT 119 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYDSIR 187 ++VPV++K+R + + + D G LTIHGRTR G A +D IR Sbjct: 120 ANLNVPVSVKLRI-LPTGIEDSLALYKRLVDAGAAMLTIHGRTRFQNKVDTGTANWDYIR 178 Query: 188 AVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 V V +PVIANG+I + + R + TG D +M P +F E + Sbjct: 179 QVVDLVGDRVPVIANGNICNLDEVRKCFEVTGVDGVMSSEGILEYPPLFTETNVESTGFK 238 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ-EHAPNDQFRRTFNAIE 304 P L + L + G G + R H+ +L + + + R Sbjct: 239 RTGPGRLQMAEDYLELCKEYPSEEGGQGSGLKCIRAHLHRFLHADLQVHTKIRDAVVKTF 298 Query: 305 DASEQLEALEAYFE 318 +EA+ E Sbjct: 299 TLEAAVEAVSMIRE 312 >UniRef50_D1N0Y1 Dihydrouridine synthase DuS n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Y1_9BACT Length = 334 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 86/311 (27%), Positives = 147/311 (47%), Gaps = 5/311 (1%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 N L+ AP++G TD P+R G +EM+ + ++S + E V Sbjct: 7 NALLMAPLSGFTDLPYRRAARAGGCRFAFTEMVDVASLTYARERSAGMLRRGPEEEFLGV 66 Query: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129 Q+ G+D + + AA + E ++D N+GCP KV +K AG+ L ++ D + + Sbjct: 67 QLVGADHEFIRRAADVVNEYEFSVVDFNLGCPVPKVAKKGAGAELGRHLDAALACFAIIA 126 Query: 130 NAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 PVT KIR A + +A+ + G QA+T+HGR + ++G + IRAV Sbjct: 127 ERSRHPVTAKIRIVDAEDPAPTLALAKGLAELGAQAITVHGRIKEAFYSGPVNFGMIRAV 186 Query: 190 KQKVS-IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 ++ + + VIANG +T +K + + TG +M+ R A G PW+F E L G+ Sbjct: 187 REALPGVQVIANGGVTGRVKYQEIRRETGCSLVMLARGAMGNPWLFNE----LSLGDAYV 242 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 P + E ++ HV + + YG R+ARK + YL+ + + +A+ ++ Sbjct: 243 PPDIDEWFGVIREHVEGMIELYGEESAMRMARKILHDYLKGRGFHSVMKALASAVATRAD 302 Query: 309 QLEALEAYFEN 319 L + Sbjct: 303 FEAFLARTKQE 313 >UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7AQM0_BABBO Length = 355 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 82/304 (26%), Positives = 125/304 (41%), Gaps = 20/304 (6%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R R +AAPM ++ PFR LC LT + M+ V + D+ Sbjct: 11 RPRYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKYRAVHFQTSDDDRPLI 70 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 Q+ G D + AAR+ + +D+N+GCP GS LL PD+V I++ V Sbjct: 71 AQVCGDDAGTITQAARLL-KGHVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSRV 129 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSI 186 V + VT KIR ++ + E G +ALT+HGR R+ G A++D+I Sbjct: 130 TREVGIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSEKGTNVGAADWDAI 189 Query: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 R +K ++ IPVIANG I L YTGADA+M + RP++F I + Sbjct: 190 RIIKSRLRIPVIANGGIETFADVERCLSYTGADAVMSSESLLERPYLFSGITYDH----- 244 Query: 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKH-VSWYLQEHAPNDQFRRTFNAIED 305 ++ ++ + Y R H Q + + R Sbjct: 245 ---------LDIMDEYL-GIVRRYPDQSPC-CIRGHAFKILFQHCQRHPEIRNRLTDAMS 293 Query: 306 ASEQ 309 + Sbjct: 294 LDDF 297 >UniRef50_B0ESC7 tRNA-dihydrouridine synthase, putative n=2 Tax=Entamoeba RepID=B0ESC7_ENTDI Length = 515 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 120/283 (42%), Gaps = 8/283 (2%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 L+ +LI + + PFR G +T++EM+ + V + Sbjct: 166 LDLKGKLILPSLCTFGNLPFRKAVKRFGCDVTMTEMIMAESLVEGKTSEWALVKRDPSED 225 Query: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125 I +Q+ + A A ++ ++N CP V +K G+ L++ P ++S+L Sbjct: 226 IFGIQLCVGNSLLAAKACQVLNSVDCDFYELNCACPIDYVYKKGMGAQLIERPKRIESLL 285 Query: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + + + PV +K+RTG + + + G ++IHGRTR + A++D Sbjct: 286 HAMRSVTERPVAIKVRTGKSSNTIQDV-LLPNCANYGAAMVSIHGRTRDQRYTKSADWDF 344 Query: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 I+ PVI GDI + L+ G + IGR A +PWI+ EI+ D Sbjct: 345 IKQATTITQCPVIGVGDIYGYKDYQKALE-CGVATVAIGRGALIKPWIYTEIKEKRDWD- 402 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E +L + + +G A+G R+ + +L Sbjct: 403 ----ISSSERLDILRQYALDGLSHWGSDAQGISKTREFMCHHL 441 >UniRef50_Q06063 tRNA-dihydrouridine synthase 4 n=23 Tax=Saccharomycetales RepID=DUS4_YEAST Length = 367 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 120/313 (38%), Gaps = 20/313 (6%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 R IA PM + PFR LC E + S M+ + V + +E Sbjct: 38 RPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPLI 97 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 VQ+ ++ ++ + V I IN GCP K+ R+ G AL+ D++ S++ V Sbjct: 98 VQVGVNNVADLLKFVEM-VAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCSMVHAV 156 Query: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRA 188 + + ++ + E+ + D G+ +TIHGRTR + A D+I+ Sbjct: 157 KDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQPANLDAIKY 216 Query: 189 VKQKV---SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 + + + ++PVIANGD + YTGA +M R P +F Sbjct: 217 IIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYTTCPWGC- 275 Query: 246 LLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIED 305 + +F G +++A+ H+ L+ + +++ Sbjct: 276 -------------IEKFCYWALEFGG--LPFQLAQHHLYCMLENMELKKSLLKKMMNLKN 320 Query: 306 ASEQLEALEAYFE 318 ++ FE Sbjct: 321 YISLIDWFNKTFE 333 >UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi RepID=A8QBG9_BRUMA Length = 513 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 125/309 (40%), Gaps = 23/309 (7%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 R + APM ++ FR + + GA L S M+ + V ++ R + + VQ Sbjct: 61 RYVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFVTDATYRRTALSTCLDDRPLVVQ 120 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 +DP + +A + VES +D+N+GCP R G+ L + ++ ++T + + Sbjct: 121 FCANDPVILLNACQ-LVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLICEMITLLHS 179 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYDSIRA 188 +P++ KIR + A+ G LT+HGRTR G A++ ++RA Sbjct: 180 HSRLPLSCKIRI--LQDINETVAYARALVKAGACMLTVHGRTREQRGPNTGLADWYAMRA 237 Query: 189 VKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLP 248 V V +PV+ANG+I P L+ TGA A+M P++F + +H ++ Sbjct: 238 VVSAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLFEK-RHEVNWTAARE 296 Query: 249 PLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYL-QEHAPNDQFRRTFNAIEDAS 307 L AE R H+ R + + Sbjct: 297 YLDFAERYE----------------STTSAVRAHLFRICHHSLLEYSDLRERLSYVCTTE 340 Query: 308 EQLEALEAY 316 + + ++ Sbjct: 341 DFRQIMDDL 349 >UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L63_SACD2 Length = 318 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 130/317 (41%), Gaps = 16/317 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPG---- 65 R+ APM G+ D R + +G + V+E + V + + +DE Sbjct: 2 RIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETPA 61 Query: 66 -------IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 VQ+ GS+P +A A E GA ID+N GCPAK VNR G+ LL Sbjct: 62 LYRGAHCPVRVQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACLLDET 121 Query: 119 DVVKSILTEVVNAVD--VPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACL 176 D V I+ V A PVT KIR G+ + A+ E G L +H R++ Sbjct: 122 DTVFDIVNAVRKATPASTPVTAKIRLGYL-NRDSYLRNAKAIEAAGANELCVHARSKTDG 180 Query: 177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 + A + I ++ +SIPV+ANG+I + + + M+GR +P + E Sbjct: 181 YQPPAYWHYIGDIRDNLSIPVVANGEIWSLEDFKRCAEQSKCSDFMLGRGLLAKPDLALE 240 Query: 237 IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQF 296 I+ Y+ GE PL EV + Y P ++ + + ++++ + Sbjct: 241 IKQYMA-GEAFNPLSWDEVCAHVRTLFERNCQSYPPKYLGNRVKQWLFYLQRQYSEAAEL 299 Query: 297 RRTFNAIEDASEQLEAL 313 D AL Sbjct: 300 FEAIKRERDEQALRRAL 316 >UniRef50_D0MWM4 tRNA-dihydrouridine synthase 3 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWM4_PHYIN Length = 681 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 127/329 (38%), Gaps = 52/329 (15%) Query: 5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEP 64 + ++ AP+ + + PFR L + GA +T EM + + + Sbjct: 284 PVDFKRKIYIAPLTTVGNLPFRRLMKQTGADITCGEMAMATNLLKAQQSEWALLRRHKSE 343 Query: 65 GIRTVQIAGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 + VQ+AGS +M + E+ +DINMGCP V R AGSAL+ P + Sbjct: 344 DVFGVQLAGSFSDQMTRVCELLTRETDIDFVDINMGCPIDIVCRAGAGSALMTRPPRLLE 403 Query: 124 ILTEVVNAVDV-------------PVTLKIRTGWAPEHRNCEEIAQLAEDC--------- 161 +++ + +++ +T+K+RTGW+ + ++ + Sbjct: 404 VVSGALTGLELGTRMRTGGIVNTPGLTVKLRTGWSEKQPTAHKLIPKLQAVRASQAYVNS 463 Query: 162 -------------GIQALTIHGRTRACLFNGEAEYDSIRAVKQK----------VSIPVI 198 I A+T+HGR+R + A++D I +IP + Sbjct: 464 AVVTADFKLRATQSIDAITVHGRSRLQRYTKHADWDYIFQCSDAQKGSIDDKPLSNIPFV 523 Query: 199 ANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRL 258 GD+ + L D M+ R A +PW+ EI+ + +E L Sbjct: 524 GGGDVLSYEEFDEHLQNGKLDTCMLARGALIKPWLPTEIKERRHWD-----ISASERLDL 578 Query: 259 LCAHVRELHDFYG-PAKGYRIARKHVSWY 286 L VR + +G KG R+++ + Sbjct: 579 LKDFVRFGLEHWGSDQKGVNRTRRYLLEW 607 >UniRef50_A8J121 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8J121_CHLRE Length = 368 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 8/305 (2%) Query: 17 MAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP 76 MAGI+ P+R L GA + SEM+ ++ + ++ ++R D+ +R+VQ+ G P Sbjct: 1 MAGISSAPYRRLATSHGAAMATSEMVIASTLLVKNRRTRKLASFADDERVRSVQLYGVKP 60 Query: 77 KEMADAARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDV- 134 +++ A R+ V E G Q +D+N GCP +K+ + GSAL P + ++ V Sbjct: 61 EQLEQAVRLLVCEHGVQHVDLNFGCPVRKITARGGGSALPLRPRLFAKLVAAAVAGAGGE 120 Query: 135 -PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV 193 PVT+K R G PE + ++AE G AL +H RT L+ ++ ++RA+ + V Sbjct: 121 APVTVKFRVGLTPELPTHLQAGRIAEAEGAAALVLHARTADQLYASPVDWAAVRALVEAV 180 Query: 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLA 253 IPV+ NGD+ + A +L TG +M+GRAA GRPW+F E+ L PP L Sbjct: 181 RIPVVGNGDVFEGADALRLLRETGCAGVMVGRAAVGRPWVFDEVAAALTGAPPPPPPRLG 240 Query: 254 EVKRLLCAHVRELHDFY-----GPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASE 308 EV H D+Y RK + YL + A E + Sbjct: 241 EVVAAALRHAEMEVDWYRGYHDSERDTLLRFRKFIKLYLLGFNSTGSLQSCLFAAETLEQ 300 Query: 309 QLEAL 313 A+ Sbjct: 301 WRAAV 305 >UniRef50_C7NBC4 Dihydrouridine synthase DuS n=3 Tax=Leptotrichia RepID=C7NBC4_LEPBD Length = 325 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 80/310 (25%), Positives = 148/310 (47%), Gaps = 12/310 (3%) Query: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQ 70 ++ APMAGITD FR + + +EM+++N E D + ++ D Q Sbjct: 2 KIYTAPMAGITDYSFRKILEKFEPDFLFTEMVNANLLNREDDTTINELLKCDNKEKTGTQ 61 Query: 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVN 130 I G D E+ G + I+INMGCP K+ + AGSALL+ ++V+ +L E Sbjct: 62 IFGGDKNELVSGILKLKNFGFRKININMGCPQPKIVKNGAGSALLENYELVEQVLLET-Q 120 Query: 131 AVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV- 189 +D +++KIR G+ + N E LA + + +HGRT+ +++G A ++ + + Sbjct: 121 NIDAKISIKIRVGY-KDFDNPEIFLNLANKHNLDFICVHGRTQKQMYSGTANWEIVEKLS 179 Query: 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 K +I NGD+ +P + + + D +++ R G PW+ + + +L TG++ Sbjct: 180 KMPRNINFFGNGDLFEPSEIKRKIASCNLDGIILSRGIIGNPWLISQTREFLKTGKINTI 239 Query: 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 E K L+ H++ + + G K K + Y Q+ + + D + + Sbjct: 240 QTFDETKSLVLEHLQNIVENKGEKKAVLEINKFLRPYFQKF-----WDKNL----DRNSE 290 Query: 310 LEALEAYFEN 319 + +E +F+ Sbjct: 291 IAVIENFFDE 300 >UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisella RepID=A7NDQ7_FRATF Length = 327 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 127/328 (38%), Gaps = 23/328 (7%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRT 68 ++ APM TDR +R + + + +EM++ N + + + + + + T Sbjct: 6 RKICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILHGNKE--FLLKYNPQENPVT 63 Query: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128 +Q+ G PK+ ++ E I+IN+GCP+++V + G +L+ P++V + + Sbjct: 64 LQLGGCVPKDFISCGKLAEELDYNEININVGCPSERVKKGNFGLSLMAEPELVADCVKAM 123 Query: 129 VNAVDVPVTLKIRTGWA--PEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSI 186 + +++P+++K R G+ + GI L IH R E +I Sbjct: 124 KDNLNIPISVKCRIGYDHNDSYEELYNFVDKQVQAGIDYLCIHARKGWLSGLSPKENRTI 183 Query: 187 RAV---------KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 + K ++ + NG IT + + L Y D++MIGR A P +F++ Sbjct: 184 PELKYDVVYSIKKDFPNLELGINGGITTIQEIQQHLKY--VDSVMIGREAYHNPMLFKDF 241 Query: 238 QHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFR 297 + L ++ ++ + P KH +R Sbjct: 242 DNIFYNQPTTNISALEIAYKMAEYIKDQMDN--DPYIKLNNITKHTLNLFNGLPNAKVYR 299 Query: 298 RTFNAIEDASE-----QLEALEAYFENF 320 R + E L ALE + Sbjct: 300 RYLSENATKKEANVDTFLTALEVFENKL 327 >UniRef50_Q9VJ06 CG10495 n=12 Tax=Drosophila RepID=Q9VJ06_DROME Length = 396 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 125/308 (40%), Gaps = 17/308 (5%) Query: 15 APMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS 74 APM + FR L G L + MM S+ + + Q A Sbjct: 28 APMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAK 87 Query: 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAV-- 132 DP E +A++ ID+N GCP K G +L+ P++V ++ EV + Sbjct: 88 DPTEFVTSAQLIY-PYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLPG 146 Query: 133 DVPVTLKIR-TGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE-AEYDSIRAVK 190 D V++K+R G + ++A+ E G+ LT+HGRT A + + + ++ V+ Sbjct: 147 DFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKDTLDIPAMSQVR 206 Query: 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPL 250 Q + IP+I NG++ A + + TGA +M R P +F G+ P Sbjct: 207 QSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALFN---SNYPDGKTTPLS 263 Query: 251 PLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQL 310 + + + A G ++ H+++ R FN++ + + Sbjct: 264 CVQQWLDIASAA--------GDNLLFQCFHHHLTFMYSAQ-MKRDLRVQFNSLGSKEQVV 314 Query: 311 EALEAYFE 318 + L+ ++ Sbjct: 315 DFLKEHYN 322 >UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaproteobacteria RepID=DUSC_PASMU Length = 312 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 137/314 (43%), Gaps = 17/314 (5%) Query: 11 RLIAAPMAGITDRPFRTLCYE-MGAGLTVSEMMSSNPQVWESDKSRLRMVH------IDE 63 R+I APM G+ D R L + L VSE + Q+ + Sbjct: 2 RVILAPMQGVLDPFVRQLLTQVNQYDLCVSEFVRVVDQLLPTKVFYRLCPELYQQGLTAS 61 Query: 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 VQ+ G P+ +A+ A+ +E G+ ID+N GCP+K VN G++LL+ P+++ Sbjct: 62 GTPVRVQLLGQHPQWLAENAQRAIELGSHGIDLNCGCPSKTVNGSNGGASLLKQPELIYH 121 Query: 124 ILTEVVNAVDV--PVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFN-GE 180 + AV PV++K+R GW EIA + G +TIHGRT+ + Sbjct: 122 ATKALRAAVPKALPVSVKVRLGWD-NSEQAFEIADAVQQGGATEITIHGRTKMDGYRADR 180 Query: 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY 240 + I V+Q++SIPVIANG+I D +A L TG LMIGR A P + + ++ Sbjct: 181 INWAKINDVRQRLSIPVIANGEIWDWQSGQACLAETGCQDLMIGRGALNIPNLSQVVKFN 240 Query: 241 LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF 300 +P AEV LL + + F ++ + + + + D + Sbjct: 241 QA------KMPWAEVLILLHQYAHTENQFDTGFYHVARIKQWLGYLKKAYPQADALFQLI 294 Query: 301 NAIEDASEQLEALE 314 D ++ Sbjct: 295 KTCHDGQALRMKID 308 >UniRef50_Q2RTX4 Dihydrouridine synthase TIM-barrel protein yjbN n=3 Tax=Bacteria RepID=Q2RTX4_RHORT Length = 349 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 124/330 (37%), Gaps = 28/330 (8%) Query: 9 RNRLIAAPMAGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR 67 RL APM TDR R ++ L +EM+++ + + H + Sbjct: 18 DRRLSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLHADPGRF--LDHHPDEHPL 75 Query: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127 +Q+ GSDP+ +A+A R+ G I++N+GCP+ +V+ G+ L+ P +V L+ Sbjct: 76 ALQLGGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSSGRFGACLMADPALVAECLSA 135 Query: 128 VVNAVDVPVTLKIRTGWA--PEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + A + PVT+K R G + GI + +H R E Sbjct: 136 MAEASNAPVTIKHRIGIDDLDSYDQLVGFVDQVARSGIATIIVHARKAWLKGLSPKENRE 195 Query: 186 IRAVK---------QKVSIPVIANGDITDPLKARAVL-----DYTGADALMIGRAAQGRP 231 I ++ + VI NG IT +A L D +MIGRAA P Sbjct: 196 IPPLRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIGRAAYETP 255 Query: 232 WIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHA 291 ++ + + GE P EV L ++ + P + +H+ Sbjct: 256 YMLAQADGLIF-GEATPAPSRHEVALALLPYLDAMTARGEP---VKRLTRHILGLFHGQP 311 Query: 292 PNDQFRRTFNAI-----EDASEQLEALEAY 316 +RR A ++AL Sbjct: 312 GARAYRRHLGEAGVRPDATAQVLIDALAHI 341 >UniRef50_C5LCP2 tRNA-dihydrouridine synthase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LCP2_9ALVE Length = 606 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 19/293 (6%) Query: 6 YQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPG 65 R + AP+ + + PFR LC +G +TVSEM + + + + + Sbjct: 233 IHGRPP-MLAPLTTVGNLPFRRLCVSLGCEVTVSEMALAESLLKGNRAEHALLKKHPDEK 291 Query: 66 IRTVQIAGSDPKEMADAARIN--VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKS 123 I +Q+AG P M+ A + +DINMGCP + +++K AGSAL+ + Sbjct: 292 IFGIQVAGGFPDMMSRCAEMLCREMDDFDFLDINMGCPLEGLHKKGAGSALMTRLGKAEG 351 Query: 124 ILTEVVNAV---DVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE 180 +++ + D +T+KIRT ++ +++A A G+ + +HGRT ++ Sbjct: 352 VMSSMAKVCHAYDKNLTVKIRTAHYGQNHVYDKVAARAVSSGVDGVVLHGRTAQQRYSRP 411 Query: 181 AEYDSIRAVKQKVS-------IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 A++ + + +P++ GDI D +A ++ G + LMIGR A +PWI Sbjct: 412 ADWTFHTKCRTAMDSAVPGNAVPLVGCGDIIDWREAIERMETPGVEGLMIGRGALIKPWI 471 Query: 234 FREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSW 285 F EI+ + D + AE LL V +G +G R+ + Sbjct: 472 FTEIKEHRDWD-----ISSAERLELLKRFVSYGLTHWGTDTRGVESTRRFLLE 519 >UniRef50_B9PN28 tRNA-dihydrouridine synthase, putative n=3 Tax=Toxoplasma gondii RepID=B9PN28_TOXGO Length = 1220 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 12/285 (4%) Query: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTV 69 RLI AP+ + + PFR LC E+GA +TVSEM + V + V Sbjct: 819 RRLILAPLTTVGNLPFRRLCVELGAEVTVSEMAVAKSIVDGKQSELSLLKRHKSETFFGV 878 Query: 70 QIAGSDPKEMADAARIN--VESGAQIIDINMGCPAKKVNRK-LAGSALLQYPDVVKSILT 126 QIAG P+ + I + ID+N CP +++R+ AG+ +L +P ++S++ Sbjct: 879 QIAGGTPEVLNACTDILASEDVSCDFIDLNAACPLVQLHRRFKAGACMLDHPKRLESLVE 938 Query: 127 EV-VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDS 185 + +VPVT+K+RT + + + D G AL +HGRT + A++ Sbjct: 939 SMTTRHPEVPVTVKLRTANQGKKQVLHSFIRRLGDAGAAALIVHGRTAQQRYTKAADWSY 998 Query: 186 IRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDT 243 + ++ + P+I GDI + L +D LMI RAA +PW+F EI Sbjct: 999 VAQCREALDSSTPLIGCGDIFSSPEFEFRLASGASDGLMIARAALVKPWVFTEISERKVW 1058 Query: 244 GELLPPLPLAEVKRLLCAHVRELHDFYG-PAKGYRIARKHVSWYL 287 + +E LL VR + +G ++G R+ + L Sbjct: 1059 D-----ISASERLDLLKRFVRFGLEHWGSDSRGVATTRRFLLELL 1098 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.163 0.467 Lambda K H 0.267 0.0501 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,010,895,940 Number of Sequences: 3077464 Number of extensions: 86400387 Number of successful extensions: 270267 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1553 Number of HSP's successfully gapped in prelim test: 1574 Number of HSP's that attempted gapping in prelim test: 261637 Number of HSP's gapped (non-prelim): 4463 length of query: 321 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 192 effective length of database: 643,403,500 effective search space: 123533472000 effective search space used: 123533472000 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.5 bits)