Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ABT5
DateThu Jan 5 11:16:20 GMT 2012
Unique Job ID891d3a24dfd14f0a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1vhna_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
Confidence and coverage
Confidence:100.0% Coverage: 94%
303 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH
Secondary structure 
SS confidence 
Disorder  ???????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.
Sequence  NAIEDASEQLEALEAYFENFA
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1vhn chain A

3D model

Region: 11 - 320
Aligned: 303
Modelled: 310
Confidence: 100.0%
Identity: 33%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 3b0v chain D

3D model

Region: 8 - 319
Aligned: 303
Modelled: 305
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase/rna
Chain: D: PDB Molecule:trna-dihydrouridine synthase;
PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna

Phyre2

PDB 3hf3 chain A

3D model

Region: 1 - 249
Aligned: 249
Modelled: 249
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01

Phyre2

PDB 3gr7 chain A

3D model

Region: 1 - 248
Aligned: 248
Modelled: 248
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form

Phyre2

PDB 3kru chain C

3D model

Region: 1 - 242
Aligned: 241
Modelled: 242
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39

Phyre2

PDB 1z41 chain A domain 1

3D model

Region: 1 - 248
Aligned: 248
Modelled: 248
Confidence: 100.0%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 2h90 chain A

3D model

Region: 1 - 245
Aligned: 245
Modelled: 245
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin

Phyre2

PDB 1djn chain B

3D model

Region: 1 - 240
Aligned: 238
Modelled: 240
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)

Phyre2

PDB 1ps9 chain A domain 1

3D model

Region: 1 - 244
Aligned: 242
Modelled: 244
Confidence: 100.0%
Identity: 21%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1ps9 chain A

3D model

Region: 1 - 244
Aligned: 242
Modelled: 244
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase

Phyre2

PDB 1djq chain A domain 1

3D model

Region: 1 - 240
Aligned: 240
Modelled: 240
Confidence: 100.0%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1vyr chain A

3D model

Region: 1 - 248
Aligned: 244
Modelled: 248
Confidence: 100.0%
Identity: 22%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 3k30 chain B

3D model

Region: 1 - 240
Aligned: 239
Modelled: 240
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex

Phyre2

PDB 1gwj chain A

3D model

Region: 1 - 248
Aligned: 245
Modelled: 247
Confidence: 100.0%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 2gq8 chain A

3D model

Region: 1 - 248
Aligned: 244
Modelled: 248
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone

Phyre2

PDB 3gka chain B

3D model

Region: 1 - 248
Aligned: 238
Modelled: 248
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: B: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei

Phyre2

PDB 3aty chain A

3D model

Region: 1 - 248
Aligned: 240
Modelled: 244
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:prostaglandin f2a synthase;
PDBTitle: crystal structure of tcoye

Phyre2

PDB 1vji chain A

3D model

Region: 1 - 249
Aligned: 235
Modelled: 249
Confidence: 100.0%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1icp chain A

3D model

Region: 1 - 248
Aligned: 240
Modelled: 248
Confidence: 100.0%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1oya chain A

3D model

Region: 1 - 248
Aligned: 245
Modelled: 248
Confidence: 100.0%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2
1
d1vhna_
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c3b0vD_
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c3hf3A_
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c3gr7A_
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c3kruC_
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d1z41a1
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c2h90A_
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c1djnB_
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d1ps9a1
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c1ps9A_
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d1djqa1
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d1vyra_
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c3k30B_
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d1gwja_
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c2gq8A_
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c3gkaB_
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c3atyA_
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d1vjia_
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d1icpa_
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d1oyaa_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vhna_
100.0 33 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
2c3b0vD_
100.0 25 PDB header:oxidoreductase/rna
Chain: D: PDB Molecule:trna-dihydrouridine synthase;
PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna
3c3hf3A_
100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
4c3gr7A_
100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form
5c3kruC_
100.0 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39
6d1z41a1
100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
7c2h90A_
100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
8c1djnB_
100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
9d1ps9a1
100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
10c1ps9A_
100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
11d1djqa1
100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
12d1vyra_
100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
13c3k30B_
100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
14d1gwja_
100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
15c2gq8A_
100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone
16c3gkaB_
100.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei
17c3atyA_
100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:prostaglandin f2a synthase;
PDBTitle: crystal structure of tcoye
18d1vjia_
100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
19d1icpa_
100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
20d1oyaa_
100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
21c3l5aA_
not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus
22d1q45a_
not modelled 100.0 14 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
23d1gtea2
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
24d1ep3a_
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
25d1juba_
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
26c3oixA_
not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative dihydroorotate dehydrogenase; dihydroorotate
PDBTitle: crystal structure of the putative dihydroorotate dehydrogenase from2 streptococcus mutans
27d2b4ga1
not modelled 99.9 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
28d1f76a_
not modelled 99.9 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
29d1d3ga_
not modelled 99.9 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
30c2htmB_
not modelled 99.9 16 PDB header:biosynthetic protein
Chain: B: PDB Molecule:thiazole biosynthesis protein thig;
PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8
31c2fptA_
not modelled 99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial;
PDBTitle: dual binding mode of a novel series of dhodh inhibitors
32c1gthD_
not modelled 99.9 23 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
33d1tv5a1
not modelled 99.9 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
34c1tv5A_
not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase homolog, mitochondrial;
PDBTitle: plasmodium falciparum dihydroorotate dehydrogenase with a bound2 inhibitor
35d1uuma_
not modelled 99.9 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
36c2z6jB_
not modelled 99.9 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:trans-2-enoyl-acp reductase ii;
PDBTitle: crystal structure of s. pneumoniae enoyl-acyl carrier2 protein reductase (fabk) in complex with an inhibitor
37c3gyeA_
not modelled 99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, putative;
PDBTitle: didydroorotate dehydrogenase from leishmania major
38c3bo9B_
not modelled 99.8 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nitroalkan dioxygenase;
PDBTitle: crystal structure of putative nitroalkan dioxygenase (tm0800) from2 thermotoga maritima at 2.71 a resolution
39d1tb3a1
not modelled 99.8 20 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
40c2a7nA_
not modelled 99.8 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:l(+)-mandelate dehydrogenase;
PDBTitle: crystal structure of the g81a mutant of the active chimera of (s)-2 mandelate dehydrogenase
41d1goxa_
not modelled 99.8 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
42d1p4ca_
not modelled 99.8 14 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
43c3ffsC_
not modelled 99.8 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase
44c2cdh1_
not modelled 99.8 19 PDB header:transferase
Chain: 1: PDB Molecule:enoyl reductase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
45d1xm3a_
not modelled 99.8 17 Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
46d1vrda1
not modelled 99.8 18 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
47c3khjE_
not modelled 99.8 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: c. parvum inosine monophosphate dehydrogenase bound by inhibitor c64
48c2gjlA_
not modelled 99.8 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein pa1024;
PDBTitle: crystal structure of 2-nitropropane dioxygenase
49c3r2gA_
not modelled 99.8 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine 5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine 5' monophosphate dehydrogenase from2 legionella pneumophila
50d1jr1a1
not modelled 99.8 17 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
51c2e77B_
not modelled 99.8 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate oxidase;
PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex
52d1pvna1
not modelled 99.8 19 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
53c2rduA_
not modelled 99.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyacid oxidase 1;
PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate
54c1vrdA_
not modelled 99.7 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase (tm1347)2 from thermotoga maritima at 2.18 a resolution
55c1ypfB_
not modelled 99.7 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:gmp reductase;
PDBTitle: crystal structure of guac (ba5705) from bacillus anthracis at 1.8 a2 resolution
56d1eepa_
not modelled 99.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
57d1jcna1
not modelled 99.7 16 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
58c1me9A_
not modelled 99.7 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh) from2 tritrichomonas foetus with imp bound
59d1p0ka_
not modelled 99.7 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
60c2zrvC_
not modelled 99.7 14 PDB header:isomerase
Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase;
PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn.
61d1vcfa1
not modelled 99.7 15 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
62d1kbia1
not modelled 99.7 12 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
63c1kbiB_
not modelled 99.7 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome b2;
PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme
64c3bw2A_
not modelled 99.7 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitropropane dioxygenase;
PDBTitle: crystal structures and site-directed mutagenesis study of nitroalkane2 oxidase from streptomyces ansochromogenes
65d2cu0a1
not modelled 99.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
66d1zfja1
not modelled 99.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
67c3tdmD_
not modelled 99.6 20 PDB header:de novo protein
Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel
PDBTitle: computationally designed tim-barrel protein, halfflr
68c2cu0B_
not modelled 99.6 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase from2 pyrococcus horikoshii ot3
69c1jcnA_
not modelled 99.6 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase i;
PDBTitle: binary complex of human type-i inosine monophosphate dehydrogenase2 with 6-cl-imp
70c2y85D_
not modelled 99.6 18 PDB header:isomerase
Chain: D: PDB Molecule:phosphoribosyl isomerase a;
PDBTitle: crystal structure of mycobacterium tuberculosis phosphoribosyl2 isomerase with bound rcdrp
71d1yxya1
not modelled 99.6 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
72c2a7rD_
not modelled 99.5 12 PDB header:oxidoreductase
Chain: D: PDB Molecule:gmp reductase 2;
PDBTitle: crystal structure of human guanosine monophosphate2 reductase 2 (gmpr2)
73d1jvna1
not modelled 99.5 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
74d1wv2a_
not modelled 99.5 15 Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
75d1geqa_
not modelled 99.4 15 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
76c2qr6A_
not modelled 99.4 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:imp dehydrogenase/gmp reductase;
PDBTitle: crystal structure of imp dehydrogenase/gmp reductase-like protein2 (np_599840.1) from corynebacterium glutamicum atcc 13032 kitasato at3 1.50 a resolution
77d1jpma1
not modelled 99.4 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
78d1rd5a_
not modelled 99.4 25 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
79c1jvnB_
not modelled 99.4 19 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
80d1thfd_
not modelled 99.3 20 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
81d1qo2a_
not modelled 99.3 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
82c3q58A_
not modelled 99.3 17 PDB header:isomerase
Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase;
PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
83d1h5ya_
not modelled 99.3 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
84d2gl5a1
not modelled 99.2 16 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
85d1vzwa1
not modelled 99.2 15 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
86d1ka9f_
not modelled 99.2 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
87d1y0ea_
not modelled 99.2 18 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
88c2w6rA_
not modelled 99.2 18 PDB header:lyase
Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit
PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels
89d1xcfa_
not modelled 99.1 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
90c1zfjA_
not modelled 99.1 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
91d1qopa_
not modelled 99.1 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
92c2qjjC_
not modelled 99.1 13 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans
93c3rcyC_
not modelled 99.0 15 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035
94c2gl5A_
not modelled 99.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase protein;
PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium
95c3igsB_
not modelled 99.0 19 PDB header:isomerase
Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2;
PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
96c2ox4E_
not modelled 99.0 15 PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4
97c2qq6B_
not modelled 99.0 18 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941
98c3t8qA_
not modelled 99.0 18 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica
99c2c3zA_
not modelled 98.9 17 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
100c3thuC_
not modelled 98.9 13 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg
101c2v82A_
not modelled 98.9 21 PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase;
PDBTitle: kdpgal complexed to kdpgal
102c2o56D_
not modelled 98.9 17 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium
103d2mnra1
not modelled 98.9 14 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
104d1nu5a1
not modelled 98.9 11 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
105c3tjiA_
not modelled 98.9 11 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg
106c3qjaA_
not modelled 98.9 17 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
107c2qdeA_
not modelled 98.8 20 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1
108c3sqsA_
not modelled 98.8 8 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12
109c3dfhC_
not modelled 98.8 10 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3
110c3bsmD_
not modelled 98.8 11 PDB header:lyase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens
111c3t6cB_
not modelled 98.8 18 PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg
112d1h1ya_
not modelled 98.8 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
113d1rvka1
not modelled 98.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
114c3jw7E_
not modelled 98.8 17 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from enterococcus faecalis2 v583 complexed with mg and dipeptide l-ile-l-tyr
115c3dipA_
not modelled 98.8 9 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase protein from the2 environmental genome shotgun sequencing of the sargasso sea
116c2pozA_
not modelled 98.7 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase;
PDBTitle: crystal structure of a putative dehydratase from mesorhizobium loti
117d2flia1
not modelled 98.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
118c3rr1B_
not modelled 98.7 12 PDB header:lyase
Chain: B: PDB Molecule:putative d-galactonate dehydratase;
PDBTitle: crystal structure of enolase prk14017 (target efi-500653) from2 ralstonia pickettii 12j
119d1wa3a1
not modelled 98.7 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
120c2oo6A_
not modelled 98.7 12 PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0