56 c1ltxR_ Probab=99.66   E-value=3e-15  Score=112.22  Aligned_columns=231  Identities=12%

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCC---------------
Q ss_conf             57700899889389999999999744997599981898544323466656205645431224464---------------
Q batch____        29 EQETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELNYTP---------------   93 (548)
Q Consensus        29 ~~~~DVvIIGgGi~Gls~A~~Lse~~pg~~V~VlEk~~~~g~~sS~~~~Nsg~ih~g~~~~~y~~---------------   93 (548)
                      ..+|||||||||++|+++|++|++  .|++|+|||+++++||..+....++.....+........               
T Consensus         5 p~~~DVvVIGaG~aGL~aA~~La~--~G~~V~vlEa~~~~GG~~~s~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   82 (494)
T c1ltxR_           5 PSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENTENSMWQEQILENEEAIP   82 (494)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGCEECHHHHHHHHHTTTCCCCCCCGGGGSCTTEEEEE
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH--CCCEEEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             743788999898889999999998--798099996788997127998527704321463225654212222234420011


Q ss_pred             -------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
Q ss_conf             -------------------------------2011111155556777542567999998874044555432110388179
Q batch____        94 -------------------------------QNADGSISIEKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMS  142 (548)
Q Consensus        94 -------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~l~  142 (548)
                                                     .......................-.+...........-...+.......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (494)
T c1ltxR_          83 LSSKDKTIQHVEVFCYASQDKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTV  162 (494)
T ss_dssp             BCSSCCCEEEEEEEECSTTCCCCCCHHHHHHTGGGCCEESSCCCEETTSHHHHHHHHHTGGGGCCEEEEEEEEEEETTEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCH
T ss_conf             33223333323311114655543122232110100233312134440148889764428565565564442102001402


Q ss_pred             EECCHHHHHHHH-----------------------------------HHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCC
Q ss_conf             937998999999-----------------------------------999998857888741340299999865203125
Q batch____       143 FVWGEDNVNFLR-----------------------------------ARYAALQQSSLFRGMRYSEDHAQIKEWAPLVME  187 (548)
Q Consensus       143 ~a~~~~~~~~L~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~i~~  187 (548)
                      ........+.+.                                   ...+.+....        .++.....+.+.+..
T Consensus       163 ~~~p~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~--------~~~~~~~~~~~~~~~  234 (494)
T c1ltxR_         163 EQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQK--------LTPNLQYFVLHSIAM  234 (494)
T ss_dssp             EECCCSHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGCGGGTGGGTTSBHHHHHHHSS--------CCHHHHHHHHTTTSC
T ss_pred             HHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHC--------CCHHHHHHHHHHHHH
T ss_conf             114589678721656430344434567777523566758864321596889998838--------999999999999975


Q ss_pred             CCCCCCE-----------------EEEEEECCCCEECHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEEE
Q ss_conf             7885321-----------------68999468814559999999999998629929994883454697489669999996
Q batch____       188 GRDPQQK-----------------VAATRTEIGTDVNYGEITRQLIASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVAD  250 (548)
Q Consensus       188 ~~~~~~~-----------------~aa~~~p~~~~vd~~~l~~~L~~~l~~~~gv~i~~~t~V~~I~~~~dg~~~V~v~~  250 (548)
                      ....+..                 -..+.++.+|   ...+.++|++.+.+.++ +|++|++|++|.++.++...+.|..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG---~~~l~~~l~~~l~~~Gg-~i~l~~~V~~I~~~~~~~~~~~v~~  310 (494)
T c1ltxR_         235 TSTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYG---QGELPQCFCRMCAVFGG-IYCLRHSVQCLVVDKESRKCKAVID  310 (494)
T ss_dssp             CCCCBHHHHHHHHHHHHTTTTSSSSSSEEEETTC---TTHHHHHHHHHHHHTTC-EEETTCCEEEEEEETTTCCEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCC---HHHHHHHHHHHHHHCCC-EEEEECCEEEEEECCCCCEEEEEEE
T ss_conf             1478824799999999999653066855886488---78999999999740487-0883042269998388976999993


Q ss_pred             CCCCCEEEEECCEEEECCCCCCHHHH
Q ss_conf             25785379998889996886757889
Q batch____       251 LKNGTAQNIRAKFVFIGAGGAALKLL  276 (548)
Q Consensus       251 ~~tG~~~~i~Ak~VIiaAGg~s~~Ll  276 (548)
                         ....+++|++||+++.......+
T Consensus       311 ---~~g~~~~a~~VI~a~~~~~~~~~  333 (494)
T c1ltxR_         311 ---QFGQRIISKHFIIEDSYLSENTC  333 (494)
T ss_dssp             ---TTCCEEECSEEEEEGGGBCTTTT
T ss_pred             ---CCCCEEEECEEEECCCCCCHHHH
T ss_conf             ---79839990789986840363643