Phyre 2 Results for P0A7I7

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Email | l.a.kelley@imperial.ac.uk
Description | P0A7I7
Date | Thu Jan 5 11:05:44 GMT 2012
Unique Job ID | 88b7f83efcfa831e

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2bz1a1
Top template information
Fold:RibA-like Superfamily:RibA-like Family:RibA-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 88%
173 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | Q | L | K | R | V | A | E | A | K | L | P | T | P | W | G | D | F | L | M | V | G | F | E | E | L | A | T | G | H | D | H | V | A | L | V | Y | G | D | I | S | G | H | T | P | V | L | A | R | V | H | S | E | C | L | T | G | D | A | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | F | S | L | R | C | D | C | G | F | Q | L | E | A | A | L | T | Q | I | A | E | E | G | R | G | I | L | L | Y | H | R | Q | E | G | R | N | I | G | L | L | N | K | I | R | A | Y | A | L | Q | D | Q | G | Y | D | T | V | E | A | N | H | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | G | F | A | A | D | E | R | D | F | T | L | C | A | D | M | F | K | L | L | G | V | N | E | V | R | L | L | T | N | N | P | K | K | V | E | I | L | T | E | A | G | I | N | I | V | E | R | V | P | L | I | V | G | R | N | P | N | N | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | .
Sequence |  | H | Y | L | D | T | K | A | E | K | M | G | H | L | L | N | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2bz1a1 |

### PDB 2bz1 chain A domain 1

Region: 1 - 173
Aligned: 173
Modelled: 172
Confidence: 100.0%
Identity: 98%
Fold: RibA-like
Superfamily: RibA-like
Family: RibA-like

Phyre2
2 |
| d1oi2a_ |

### PDB 1oi2 chain A

Region: 21 - 143
Aligned: 88
Modelled: 91
Confidence: 88.6%
Identity: 27%
Fold: DAK1/DegV-like
Superfamily: DAK1/DegV-like
Family: DAK1

Phyre2
3 |
| d1ghsa_ |

### PDB 1ghs chain A

Region: 133 - 166
Aligned: 34
Modelled: 34
Confidence: 86.3%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2
4 |
| c1un9B_ |

### PDB 1un9 chain B

Region: 21 - 148
Aligned: 91
Modelled: 96
Confidence: 86.1%
Identity: 27%
PDB header:kinase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: crystal structure of the dihydroxyacetone kinase from c.2 freundii in complex with amp-pnp and mg2+

Phyre2
5 |
| d2cyga1 |

### PDB 2cyg chain A domain 1

Region: 131 - 170
Aligned: 40
Modelled: 40
Confidence: 86.1%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2
6 |
| d1aq0a_ |

### PDB 1aq0 chain A

Region: 133 - 170
Aligned: 38
Modelled: 38
Confidence: 85.9%
Identity: 32%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2
7 |
| c3f55A_ |

### PDB 3f55 chain A

Region: 133 - 166
Aligned: 34
Modelled: 34
Confidence: 84.4%
Identity: 18%
PDB header:hydrolase, allergen
Chain: A: PDB Molecule:beta-1,3-glucanase;
PDBTitle: crystal structure of the native endo beta-1,3-glucanase (hev b 2), a2 major allergen from hevea brasiliensis (space group p41)

Phyre2
8 |
| c3ct4B_ |

### PDB 3ct4 chain B

Region: 21 - 143
Aligned: 87
Modelled: 91
Confidence: 80.8%
Identity: 29%
PDB header:transferase
Chain: B: PDB Molecule:pts-dependent dihydroxyacetone kinase,
PDBTitle: structure of dha-kinase subunit dhak from l. lactis

Phyre2
9 |
| d1un8a4 |

### PDB 1un8 chain A domain 4

Region: 52 - 150
Aligned: 64
Modelled: 68
Confidence: 71.4%
Identity: 28%
Fold: DAK1/DegV-like
Superfamily: DAK1/DegV-like
Family: DAK1

Phyre2
10 |
| d1n71a_ |

### PDB 1n71 chain A

Region: 87 - 170
Aligned: 57
Modelled: 57
Confidence: 70.9%
Identity: 21%
Fold: Acyl-CoA N-acyltransferases (Nat)
Superfamily: Acyl-CoA N-acyltransferases (Nat)
Family: N-acetyl transferase, NAT

Phyre2
11 |
| c2iu6B_ |

### PDB 2iu6 chain B

Region: 52 - 150
Aligned: 64
Modelled: 68
Confidence: 70.3%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: regulation of the dha operon of lactococcus lactis

Phyre2
12 |
| d1v96a1 |

### PDB 1v96 chain A domain 1

Region: 122 - 167
Aligned: 42
Modelled: 46
Confidence: 70.1%
Identity: 19%
Fold: PIN domain-like
Superfamily: PIN domain-like
Family: PIN domain

Phyre2
13 |
| d2g3aa1 |

### PDB 2g3a chain A domain 1

Region: 124 - 170
Aligned: 47
Modelled: 47
Confidence: 62.4%
Identity: 13%
Fold: Acyl-CoA N-acyltransferases (Nat)
Superfamily: Acyl-CoA N-acyltransferases (Nat)
Family: N-acetyl transferase, NAT

Phyre2
14 |
| d1u6ma_ |

### PDB 1u6m chain A

Region: 86 - 171
Aligned: 59
Modelled: 59
Confidence: 60.8%
Identity: 20%
Fold: Acyl-CoA N-acyltransferases (Nat)
Superfamily: Acyl-CoA N-acyltransferases (Nat)
Family: N-acetyl transferase, NAT

Phyre2
15 |
| d1y9wa1 |

### PDB 1y9w chain A domain 1

Region: 87 - 170
Aligned: 57
Modelled: 57
Confidence: 54.3%
Identity: 19%
Fold: Acyl-CoA N-acyltransferases (Nat)
Superfamily: Acyl-CoA N-acyltransferases (Nat)
Family: N-acetyl transferase, NAT

Phyre2
16 |
| c2reeB_ |

### PDB 2ree chain B

Region: 121 - 182
Aligned: 62
Modelled: 62
Confidence: 47.2%
Identity: 18%
PDB header:transferase, lyase
Chain: B: PDB Molecule:cura;
PDBTitle: crystal structure of the loading gnatl domain of cura from lyngbya2 majuscula

Phyre2
17 |
| d1y82a1 |

### PDB 1y82 chain A domain 1

Region: 122 - 167
Aligned: 42
Modelled: 41
Confidence: 45.4%
Identity: 21%
Fold: PIN domain-like
Superfamily: PIN domain-like
Family: PIN domain

Phyre2
18 |
| d1y9ka1 |

### PDB 1y9k chain A domain 1

Region: 87 - 170
Aligned: 57
Modelled: 57
Confidence: 43.4%
Identity: 18%
Fold: Acyl-CoA N-acyltransferases (Nat)
Superfamily: Acyl-CoA N-acyltransferases (Nat)
Family: N-acetyl transferase, NAT

Phyre2
19 |
| c2w62A_ |

### PDB 2w62 chain A

Region: 134 - 196
Aligned: 63
Modelled: 63
Confidence: 42.7%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:glycolipid-anchored surface protein 2;
PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose

Phyre2
20 |
| d16pka_ |

### PDB 16pk chain A

Region: 42 - 150
Aligned: 92
Modelled: 107
Confidence: 41.9%
Identity: 28%
Fold: Phosphoglycerate kinase
Superfamily: Phosphoglycerate kinase
Family: Phosphoglycerate kinase

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2bz1a1 |
|  | 100.0 | 98 | Fold:RibA-like Superfamily:RibA-like Family:RibA-like
2 | d1oi2a_ |
|  | 88.6 | 27 | Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DAK1
3 | d1ghsa_ |
|  | 86.3 | 18 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases
4 | c1un9B_ |
|  | 86.1 | 27 | PDB header:kinase Chain: B: PDB Molecule:dihydroxyacetone kinase; PDBTitle: crystal structure of the dihydroxyacetone kinase from c.2 freundii in complex with amp-pnp and mg2+
5 | d2cyga1 |
|  | 86.1 | 20 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases
6 | d1aq0a_ |
|  | 85.9 | 32 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases
7 | c3f55A_ |
|  | 84.4 | 18 | PDB header:hydrolase, allergen Chain: A: PDB Molecule:beta-1,3-glucanase; PDBTitle: crystal structure of the native endo beta-1,3-glucanase (hev b 2), a2 major allergen from hevea brasiliensis (space group p41)
8 | c3ct4B_ |
|  | 80.8 | 29 | PDB header:transferase Chain: B: PDB Molecule:pts-dependent dihydroxyacetone kinase, PDBTitle: structure of dha-kinase subunit dhak from l. lactis
9 | d1un8a4 |
|  | 71.4 | 28 | Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DAK1
10 | d1n71a_ |
|  | 70.9 | 21 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
11 | c2iu6B_ |
|  | 70.3 | 22 | PDB header:transferase Chain: B: PDB Molecule:dihydroxyacetone kinase; PDBTitle: regulation of the dha operon of lactococcus lactis
12 | d1v96a1 |
|  | 70.1 | 19 | Fold:PIN domain-like Superfamily:PIN domain-like Family:PIN domain
13 | d2g3aa1 |
|  | 62.4 | 13 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
14 | d1u6ma_ |
|  | 60.8 | 20 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
15 | d1y9wa1 |
|  | 54.3 | 19 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
16 | c2reeB_ |
|  | 47.2 | 18 | PDB header:transferase, lyase Chain: B: PDB Molecule:cura; PDBTitle: crystal structure of the loading gnatl domain of cura from lyngbya2 majuscula
17 | d1y82a1 |
|  | 45.4 | 21 | Fold:PIN domain-like Superfamily:PIN domain-like Family:PIN domain
18 | d1y9ka1 |
|  | 43.4 | 18 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
19 | c2w62A_ |
|  | 42.7 | 22 | PDB header:transferase Chain: A: PDB Molecule:glycolipid-anchored surface protein 2; PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose
20 | d16pka_ |
|  | 41.9 | 28 | Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase
21 | c3dr8B_ |
| not modelled | 41.1 | 19 | PDB header:transferase Chain: B: PDB Molecule:ynca; PDBTitle: structure of ynca, a putative acetyltransferase from salmonella2 typhimurium with its cofactor acetyl-coa
22 | d1lssa_ |
| not modelled | 38.9 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain
23 | d1qh5a_ |
| not modelled | 38.6 | 21 | Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
24 | c3kc2A_ |
| not modelled | 36.4 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae
25 | c2g1uA_ |
| not modelled | 33.6 | 16 | PDB header:transport protein Chain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution
26 | d1o8ca2 |
| not modelled | 32.5 | 20 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain
27 | d2cy2a1 |
| not modelled | 30.8 | 21 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
28 | d2je8a5 |
| not modelled | 30.5 | 14 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases
29 | d1m65a_ |
| not modelled | 30.2 | 20 | Fold:7-stranded beta/alpha barrel Superfamily:PHP domain-like Family:PHP domain
30 | d1k7ka_ |
| not modelled | 29.5 | 32 | Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1)
31 | d1i12a_ |
| not modelled | 29.0 | 13 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
32 | d2fiwa1 |
| not modelled | 26.8 | 10 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
33 | d1ltka_ |
| not modelled | 25.7 | 21 | Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase
34 | c3iupB_ |
| not modelled | 25.2 | 12 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadph:quinone oxidoreductase; PDBTitle: crystal structure of putative nadph:quinone oxidoreductase2 (yp_296108.1) from ralstonia eutropha jmp134 at 1.70 a resolution
35 | c3f8kA_ |
| not modelled | 24.9 | 19 | PDB header:transferase Chain: A: PDB Molecule:protein acetyltransferase; PDBTitle: crystal structure of protein acetyltransferase (pat) from2 sulfolobus solfataricus
36 | c3lodA_ |
| not modelled | 23.2 | 19 | PDB header:transferase Chain: A: PDB Molecule:putative acyl-coa n-acyltransferase; PDBTitle: the crystal structure of the putative acyl-coa n-acyltransferase from2 klebsiella pneumoniae subsp.pneumoniae mgh 78578
37 | d1vhsa_ |
| not modelled | 22.9 | 18 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
38 | c3exnA_ |
| not modelled | 22.2 | 18 | PDB header:transferase Chain: A: PDB Molecule:probable acetyltransferase; PDBTitle: crystal structure of acetyltransferase from thermus thermophilus hb8
39 | c3d8pB_ |
| not modelled | 22.0 | 16 | PDB header:transferase Chain: B: PDB Molecule:acetyltransferase of gnat family; PDBTitle: crystal structure of acetyltransferase of gnat family (np_373092.1)2 from staphylococcus aureus mu50 at 2.20 a resolution
40 | d2fiaa1 |
| not modelled | 21.5 | 14 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
41 | c3ecjC_ |
| not modelled | 21.3 | 13 | PDB header:oxidoreductase Chain: C: PDB Molecule:protein (homoprotocatechuate 2,3-dioxygenase); PDBTitle: structure of e323l mutant of homoprotocatechuate 2,3-dioxygenase from2 brevibacterium fuscum at 1.65a resolution
42 | c2oh1A_ |
| not modelled | 21.3 | 13 | PDB header:transferase Chain: A: PDB Molecule:acetyltransferase, gnat family; PDBTitle: crystal structure of acetyltransferase gnat family (yp_013287.1) from2 listeria monocytogenes 4b f2365 at 1.46 a resolution
43 | d1s3za_ |
| not modelled | 21.2 | 18 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
44 | d1tiqa_ |
| not modelled | 20.9 | 14 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
45 | c2q0yA_ |
| not modelled | 20.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:gcn5-related n-acetyltransferase; PDBTitle: crystal structure of gcn5-related n-acetyltransferase (yp_295895.1)2 from ralstonia eutropha jmp134 at 1.80 a resolution
46 | c2k5tA_ |
| not modelled | 20.8 | 5 | PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein yhhk; PDBTitle: solution nmr structure of putative n-acetyl transferase2 yhhk from e. coli bound to coenzyme a: northeast3 structural genomics consortium target et106
47 | d1qpga_ |
| not modelled | 20.1 | 15 | Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase
48 | d1c1da1 |
| not modelled | 20.1 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
49 | c3e48B_ |
| not modelled | 20.0 | 11 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of a nucleoside-diphosphate-sugar epimerase2 (sav0421) from staphylococcus aureus, northeast structural genomics3 consortium target zr319
50 | d1yvoa1 |
| not modelled | 19.9 | 21 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
51 | d1ghea_ |
| not modelled | 19.4 | 13 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
52 | d1yvka1 |
| not modelled | 19.3 | 12 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
53 | c3i9sA_ |
| not modelled | 18.6 | 13 | PDB header:transferase Chain: A: PDB Molecule:integron cassette protein; PDBTitle: structure from the mobile metagenome of v.cholerae. integron2 cassette protein vch_cass6
54 | c2xecD_ |
| not modelled | 18.1 | 20 | PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
55 | c2jlmE_ |
| not modelled | 17.9 | 12 | PDB header:transferase Chain: E: PDB Molecule:putative phosphinothricin n-acetyltransferase; PDBTitle: structure of a putative acetyltransferase (aciad1637) from2 acinetobacter baylyi adp1
56 | d1k3ra1 |
| not modelled | 17.8 | 25 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain
57 | d1kola2 |
| not modelled | 17.4 | 26 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain
58 | d1vpea_ |
| not modelled | 17.3 | 19 | Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase
59 | c2r1iB_ |
| not modelled | 17.1 | 19 | PDB header:transferase Chain: B: PDB Molecule:gcn5-related n-acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_831484.1) from2 arthrobacter sp. fb24 at 1.65 a resolution
60 | d1bhga3 |
| not modelled | 16.3 | 16 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases
61 | d2hmva1 |
| not modelled | 16.2 | 19 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain
62 | c3mjdA_ |
| not modelled | 16.1 | 14 | PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.9 angstrom crystal structure of orotate2 phosphoribosyltransferase (pyre) francisella tularensis.
63 | d2b5ga1 |
| not modelled | 16.0 | 15 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
64 | c1ib1E_ |
| not modelled | 15.7 | 16 | PDB header:signaling protein/transferase Chain: E: PDB Molecule:serotonin n-acetyltransferase; PDBTitle: crystal structure of the 14-3-3 zeta:serotonin n-2 acetyltransferase complex
65 | c2pc1A_ |
| not modelled | 15.3 | 28 | PDB header:transferase Chain: A: PDB Molecule:acetyltransferase, gnat family; PDBTitle: crystal structure of acetyltransferase gnat family (np_688560.1) from2 streptococcus agalactiae 2603 at 1.28 a resolution
66 | c2pswA_ |
| not modelled | 15.2 | 17 | PDB header:transferase Chain: A: PDB Molecule:n-acetyltransferase 13; PDBTitle: human mak3 homolog in complex with coa
67 | d1a9xa3 |
| not modelled | 15.1 | 15 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like
68 | d1hjsa_ |
| not modelled | 13.8 | 28 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases
69 | d1urha1 |
| not modelled | 13.6 | 13 | Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese)
70 | d1yx0a1 |
| not modelled | 13.3 | 11 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
71 | c3fncA_ |
| not modelled | 12.4 | 20 | PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of a putative acetyltransferase from listeria2 innocua
72 | c3q3vA_ |
| not modelled | 11.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni.
73 | d2f06a2 |
| not modelled | 11.5 | 17 | Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like
74 | c3eywA_ |
| not modelled | 11.5 | 21 | PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
75 | d2ef7a1 |
| not modelled | 11.2 | 16 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
76 | d1v6sa_ |
| not modelled | 11.1 | 21 | Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase
77 | d2aeea1 |
| not modelled | 11.1 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
78 | c3k9uA_ |
| not modelled | 10.9 | 21 | PDB header:transferase Chain: A: PDB Molecule:paia acetyltransferase; PDBTitle: crystal structure of paia acetyltransferase (ta0374) from thermoplasma2 acidophilum
79 | c3pp9B_ |
| not modelled | 10.7 | 14 | PDB header:transferase Chain: B: PDB Molecule:putative streptothricin acetyltransferase; PDBTitle: 1.6 angstrom resolution crystal structure of putative streptothricin2 acetyltransferase from bacillus anthracis str. ames in complex with3 acetyl coenzyme a
80 | d2v8qe1 |
| not modelled | 10.1 | 17 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
81 | d1m6ia3 |
| not modelled | 9.9 | 40 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
82 | d1mk4a_ |
| not modelled | 9.8 | 19 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
83 | c2zcuA_ |
| not modelled | 9.5 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized oxidoreductase ytfg; PDBTitle: crystal structure of a new type of nadph-dependent quinone2 oxidoreductase (qor2) from escherichia coli
84 | d1v7ca_ |
| not modelled | 9.3 | 26 | Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
85 | d2jdca1 |
| not modelled | 9.2 | 8 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
86 | d1yr0a1 |
| not modelled | 9.0 | 16 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
87 | d2euia1 |
| not modelled | 8.9 | 15 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
88 | d1xrsb2 |
| not modelled | 8.8 | 18 | Fold:Dodecin subunit-like Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
89 | c2pdoG_ |
| not modelled | 8.4 | 17 | PDB header:transferase Chain: G: PDB Molecule:acetyltransferase ypea; PDBTitle: crystal structure of the putative acetyltransferase of gnat family2 from shigella flexneri
90 | d3bzka2 |
| not modelled | 8.3 | 10 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like
91 | c2jtqA_ |
| not modelled | 8.3 | 11 | PDB header:transferase Chain: A: PDB Molecule:phage shock protein e; PDBTitle: rhodanese from e.coli
92 | d1o8ba2 |
| not modelled | 8.3 | 24 | Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
93 | d1xp3a1 |
| not modelled | 8.2 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV
94 | d1iyca_ |
| not modelled | 8.2 | 29 | Fold:Invertebrate chitin-binding proteins Superfamily:Invertebrate chitin-binding proteins Family:Antifungal peptide scarabaecin
95 | d1ryla_ |
| not modelled | 7.9 | 17 | Fold:Hypothetical protein yfbM Superfamily:Hypothetical protein yfbM Family:Hypothetical protein yfbM
96 | d1tt7a2 |
| not modelled | 7.9 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain
97 | d1tafa_ |
| not modelled | 7.8 | 29 | Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs
98 | c3efhB_ |
| not modelled | 7.8 | 19 | PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1
99 | c2yzqA_ |
| not modelled | 7.8 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph1780; PDBTitle: crystal structure of uncharacterized conserved protein from2 pyrococcus horikoshii

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0