Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	F	D	K	K	H	L	V	S	P	A	D	A	L	P	G	R	N	T	P	M	P	V	A	T	L	H	A	V	N	G	H	S	M	T	N	V	P	D	G	M	E	I	A	I	F	A	M	G	C	F	W	G	V	E	R	L	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	Q	L	P	G	V	Y	S	T	A	A	G	Y	T	G	G	Y	T	P	N	P	T	Y	R	E	V	C	S	G	D	T	G	H	A	E	A	V	R	I	V	Y	D	P	S	V	I	S	Y	E	Q	L	L	Q	V	F	W	E	N	H	D
Secondary structure
SS confidence
Disorder																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	A	Q	G	M	R	Q	G	N	D	H	G	T	Q	Y	R	S	A	I	Y	P	L	T	P	E	Q	D	A	A	A	R	A	S	L	E	R	F	Q	A	A	M	L	A	A	D	D	D	R	H	I	T	T	E	I	A	N	A	T	P	F
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?																												?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Sequence		Y	Y	A	E	D	D	H	Q	Q	Y	L	H	K	N	P	Y	G	Y	C	G	I	G	G	I	G	V	C	L	P	P	E	A
Secondary structure
SS confidence
Disorder																?													?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ff3 chain A Region: 2 - 212 Aligned: 210 Modelled: 211 Confidence: 100.0% Identity: 99% Fold: Ferredoxin-like Superfamily: Peptide methionine sulfoxide reductase Family: Peptide methionine sulfoxide reductase Phyre2 PDB 1fva chain A Region: 10 - 209 Aligned: 199 Modelled: 200 Confidence: 100.0% Identity: 62% PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase Phyre2 PDB 1fvg chain A Region: 8 - 199 Aligned: 191 Modelled: 192 Confidence: 100.0% Identity: 60% Fold: Ferredoxin-like Superfamily: Peptide methionine sulfoxide reductase Family: Peptide methionine sulfoxide reductase Phyre2 PDB 1ff3 chain C Region: 9 - 193 Aligned: 184 Modelled: 185 Confidence: 100.0% Identity: 99% Fold: Ferredoxin-like Superfamily: Peptide methionine sulfoxide reductase Family: Peptide methionine sulfoxide reductase Phyre2 PDB 2j89 chain A Region: 28 - 210 Aligned: 177 Modelled: 183 Confidence: 100.0% Identity: 48% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases Phyre2 PDB 3bqh chain A Region: 42 - 209 Aligned: 162 Modelled: 168 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) Phyre2 PDB 3e0m chain B Region: 43 - 209 Aligned: 160 Modelled: 167 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb Phyre2 PDB 3pil chain A Region: 28 - 204 Aligned: 172 Modelled: 172 Confidence: 100.0% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form Phyre2 PDB 1nwa chain A Region: 41 - 210 Aligned: 163 Modelled: 170 Confidence: 100.0% Identity: 45% PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine Phyre2 PDB 1nwa chain A Region: 41 - 210 Aligned: 163 Modelled: 170 Confidence: 100.0% Identity: 45% Fold: Ferredoxin-like Superfamily: Peptide methionine sulfoxide reductase Family: Peptide methionine sulfoxide reductase Phyre2 PDB 1kvj chain A Region: 39 - 115 Aligned: 58 Modelled: 58 Confidence: 96.1% Identity: 19% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1afi chain A Region: 50 - 118 Aligned: 50 Modelled: 50 Confidence: 95.1% Identity: 20% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1cpz chain A Region: 50 - 115 Aligned: 47 Modelled: 47 Confidence: 95.0% Identity: 17% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1q8l chain A Region: 50 - 115 Aligned: 47 Modelled: 47 Confidence: 94.7% Identity: 26% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1yjr chain A Region: 50 - 115 Aligned: 47 Modelled: 47 Confidence: 93.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein Phyre2 PDB 2kkh chain A Region: 50 - 115 Aligned: 47 Modelled: 47 Confidence: 93.9% Identity: 23% PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 Phyre2 PDB 1p6t chain A domain 2 Region: 50 - 115 Aligned: 47 Modelled: 47 Confidence: 93.9% Identity: 26% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1p6t chain A domain 1 Region: 50 - 114 Aligned: 46 Modelled: 46 Confidence: 93.9% Identity: 24% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1s6u chain A Region: 50 - 115 Aligned: 47 Modelled: 47 Confidence: 93.7% Identity: 26% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2ldi chain A Region: 50 - 115 Aligned: 47 Modelled: 47 Confidence: 93.6% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant Phyre2 1 d1ff3a_ 2 c1fvaA_ 3 d1fvga_ 4 d1ff3c_ 5 c2j89A_ 6 c3bqhA_ 7 c3e0mB_ 8 c3pilA_ 9 c1nwaA_ 10 d1nwaa_ 11 d1kvja_ 12 d1afia_ 13 d1cpza_ 14 d1q8la_ 15 c1yjrA_ 16 c2kkhA_ 17 d1p6ta2 18 d1p6ta1 19 d1s6ua_ 20 c2ldiA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ff3a_ 100.0 99 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 2 c1fvaA_ 100.0 62 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase 3 d1fvga_ 100.0 60 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 4 d1ff3c_ 100.0 99 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 5 c2j89A_ 100.0 48 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases 6 c3bqhA_ 100.0 41 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 7 c3e0mB_ 100.0 36 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 8 c3pilA_ 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 9 c1nwaA_ 100.0 45 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine 10 d1nwaa_ 100.0 45 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 11 d1kvja_ 96.1 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 12 d1afia_ 95.1 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 13 d1cpza_ 95.0 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 14 d1q8la_ 94.7 26 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 15 c1yjrA_ 93.9 19 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 16 c2kkhA_ 93.9 23 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 17 d1p6ta2 93.9 26 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 18 d1p6ta1 93.9 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 19 d1s6ua_ 93.7 26 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 20 c2ldiA_ 93.6 28 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 21 d2qifa1 not modelled 93.0 26 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 22 d1osda_ not modelled 92.6 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 23 c2l3mA_ not modelled 92.3 28 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 24 d2aw0a_ not modelled 92.3 28 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 25 c2ga7A_ not modelled 92.3 24 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 26 c2ropA_ not modelled 92.1 35 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b 27 c2ew9A_ not modelled 92.1 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 28 c2ofhX_ not modelled 92.0 26 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 29 c2kt2A_ not modelled 91.9 28 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 30 c3j09A_ not modelled 91.9 27 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 31 c2rmlA_ not modelled 91.0 24 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa 32 c3dxsX_ not modelled 90.6 21 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 33 d2ggpb1 not modelled 90.3 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 34 c1y3kA_ not modelled 87.7 23 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 35 d1mwza_ not modelled 86.6 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 36 c1yg0A_ not modelled 84.8 13 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 37 c2aj1A_ not modelled 80.8 19 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 38 c2gcfA_ not modelled 79.0 24 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 39 c2k2pA_ not modelled 68.8 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 40 d1vsra_ not modelled 59.0 43 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 41 c2f40A_ not modelled 58.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pf1455; PDBTitle: structure of a novel protein from backbone-centered nmr data and nmr-2 assisted structure prediction 42 d2phcb2 not modelled 57.5 32 Fold:DCoH-like Superfamily:PH0987 N-terminal domain-like Family:PH0987 N-terminal domain-like 43 c2phcB_ not modelled 56.8 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 44 c2rogA_ not modelled 43.4 22 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 45 d1qupa2 not modelled 36.6 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 46 d1sb6a_ not modelled 33.8 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 47 d1cw0a_ not modelled 32.7 43 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 48 c2kwaA_ not modelled 22.0 21 PDB header:transferase inhibitor Chain: A: PDB Molecule:kinase a inhibitor; PDBTitle: 1h, 13c and 15n backbone and side chain resonance assignments of the2 n-terminal domain of the histidine kinase inhibitor kipi from3 bacillus subtilis 49 d2gz1a2 not modelled 20.3 25 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 50 c3fryB_ not modelled 19.5 12 PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain 51 d1e3ha5 not modelled 15.6 19 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 52 d1pugb_ not modelled 14.6 25 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 53 c2kyzA_ not modelled 14.6 15 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 54 d1sl8a_ not modelled 12.7 25 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 55 c3mmlD_ not modelled 12.3 11 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 56 d1t4ba2 not modelled 11.6 17 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 57 d1pqua2 not modelled 10.7 17 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 58 c2crlA_ not modelled 10.7 15 PDB header:chaperone Chain: A: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase 59 d1leha2 not modelled 10.2 19 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 60 d1qv0a_ not modelled 9.7 24 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 61 d1cc8a_ not modelled 9.6 22 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 62 d1vqoa2 not modelled 9.4 36 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 d2zjra2 not modelled 9.4 45 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 64 c3dwqD_ not modelled 9.2 33 PDB header:toxin Chain: D: PDB Molecule:subtilase cytotoxin, subunit b; PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli with neu5gc-2,3gal-1,3glcnac 65 d2b0ja2 not modelled 9.2 55 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 66 c2kd1A_ not modelled 9.1 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dna integration/recombination/invertion protein; PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f 67 d2cqpa1 not modelled 8.8 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 68 d1mb4a2 not modelled 8.7 17 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 69 d1r6la2 not modelled 8.2 18 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 70 c1qupA_ not modelled 8.1 19 PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase 71 d1rl2a2 not modelled 8.1 36 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 72 c3oepA_ not modelled 7.8 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0988; PDBTitle: crystal structure of ttha0988 in space group p43212 73 c3md1B_ not modelled 7.7 10 PDB header:rna binding protein Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1) 74 d2je6b2 not modelled 7.7 25 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 75 c1jk9D_ not modelled 7.4 15 PDB header:oxidoreductase Chain: D: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: heterodimer between h48f-ysod1 and yccs 76 d2nn6b2 not modelled 6.7 23 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 77 d1uala_ not modelled 6.6 25 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 78 c2dkhA_ not modelled 6.5 26 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase; PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate 79 d2qdyb1 not modelled 6.4 19 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 80 c2kkpA_ not modelled 6.1 33 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 81 d1fe0a_ not modelled 6.1 27 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 82 d2p02a3 not modelled 6.0 27 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 83 d1rlfa_ not modelled 5.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 84 d1epwa2 not modelled 5.8 50 Fold:beta-Trefoil Superfamily:STI-like Family:Clostridium neurotoxins, C-terminal domain 85 d2fura1 not modelled 5.8 19 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 86 c3f42A_ not modelled 5.6 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori 87 c2h8bA_ not modelled 5.5 50 PDB header:hormone/growth factor Chain: A: PDB Molecule:insulin-like 3; PDBTitle: solution structure of insl3 88 c2k6tA_ not modelled 5.5 50 PDB header:hormone Chain: A: PDB Molecule:insulin-like 3 a chain; PDBTitle: solution structure of the relaxin-like factor 89 c2k6uA_ not modelled 5.4 50 PDB header:hormone Chain: A: PDB Molecule:insulin-like 3 a chain; PDBTitle: the solution structure of a conformationally restricted2 fully active derivative of the human relaxin-like factor3 (rlf) 90 c2kptA_ not modelled 5.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative secreted protein; PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a 91 d2j01d2 not modelled 5.3 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 92 d1udsa2 not modelled 5.2 14 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 93 c3f46A_ not modelled 5.2 55 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methenyltetrahydromethanopterin hydrogenase; PDBTitle: the crystal structure of c176a mutated [fe]-hydrogenase (hmd)2 holoenzyme from methanocaldococcus jannaschii 94 c2dj9A_ not modelled 5.2 80 PDB header:cytokine Chain: A: PDB Molecule:growth-blocking peptide; PDBTitle: solution structure of growth-blocking peptide of the2 cabbage armyworm, mamestra brassicae 95 d2qamc2 not modelled 5.2 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 96 c3enkB_ not modelled 5.1 30 PDB header:isomerase Chain: B: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: 1.9a crystal structure of udp-glucose 4-epimerase from2 burkholderia pseudomallei 97 d2c0sa1 not modelled 5.1 23 Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0