Phyre 2 Results for P0A8R7

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Email | l.a.kelley@imperial.ac.uk
Description | P0A8R7
Date | Thu Jan 5 11:08:35 GMT 2012
Unique Job ID | 886d99425902cec6

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1z9ha1
Top template information
Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain
Confidence and coverage
Confidence: | 37.0% | Coverage: | 20%
69 residues ( 20% of your sequence) have been modelled with 37.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | E | P | L | K | P | R | I | D | F | D | G | P | L | E | V | D | Q | N | P | K | F | R | A | Q | Q | T | F | D | E | N | Q | A | Q | N | F | A | P | A | T | L | D | E | A | Q | E | E | E | G | Q | V | E | A | V | M | D | A | A | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | R | P | K | R | S | L | W | R | K | M | V | M | G | G | L | A | L | F | G | A | S | V | V | G | Q | G | V | Q | W | T | M | N | A | W | Q | T | Q | D | W | V | A | L | G | G | C | A | A | G | A | L | I | I | G | A | G | V | G | S | V | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | T | E | W | R | R | L | W | R | L | R | Q | R | A | H | E | R | D | E | A | R | D | L | L | H | S | H | G | T | G | K | G | R | A | F | C | E | K | L | A | Q | Q | A | G | I | D | Q | S | H | P | A | L | Q | R | W | Y | A | S | I | H | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | Q | N | D | R | E | V | V | S | L | Y | A | H | L | V | Q | P | V | L | D | A | Q | A | R | R | E | I | S | R | S | A | A | E | S | T | L | M | I | A | V | S | P | L | A | L | V | D | M | A | F | I | A | W | R | N | L | R | L | I | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | R | I | A | T | L | Y | G | I | E | L | G | Y | Y | S | R | L | R | L | F | K | L | V | L | L | N | I | A | F | A | G | A | S | E | L | V | R | E | V | G | M | D | W | M | S | Q | D | L | A | A | R | L | S | T | R | A | A | Q | G | I | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | .
Sequence |  | A | G | L | L | T | A | R | L | G | I | K | A | M | E | L | C | R | P | L | P | W | I | D | D | D | K | P | R | L | G | D | F | R | R | Q | L | I | G | Q | V | K | E | T | L | Q | K | G | K | T | P | S | E | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1z9ha1 |

### PDB 1z9h chain A domain 1

Region: 67 - 143
Aligned: 69
Modelled: 77
Confidence: 37.0%
Identity: 23%
Fold: GST C-terminal domain-like
Superfamily: GST C-terminal domain-like
Family: Glutathione S-transferase (GST), C-terminal domain

Phyre2
2 |
| c3n8uB_ |

### PDB 3n8u chain B

Region: 129 - 250
Aligned: 117
Modelled: 122
Confidence: 34.8%
Identity: 15%
PDB header:hydrolase
Chain: B: PDB Molecule:imelysin peptidase;
PDBTitle: crystal structure of an imelysin peptidase (bacova_03801) from2 bacteroides ovatus at 1.44 a resolution

Phyre2
3 |
| d1tq4a_ |

### PDB 1tq4 chain A

Region: 165 - 249
Aligned: 84
Modelled: 85
Confidence: 31.1%
Identity: 7%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2
4 |
| d1qs0a_ |

### PDB 1qs0 chain A

Region: 176 - 254
Aligned: 79
Modelled: 79
Confidence: 29.5%
Identity: 13%
Fold: Thiamin diphosphate-binding fold (THDP-binding)
Superfamily: Thiamin diphosphate-binding fold (THDP-binding)
Family: Branched-chain alpha-keto acid dehydrogenase PP module

Phyre2
5 |
| d1wpga4 |

### PDB 1wpg chain A domain 4

Region: 57 - 124
Aligned: 68
Modelled: 68
Confidence: 22.5%
Identity: 13%
Fold: Calcium ATPase, transmembrane domain M
Superfamily: Calcium ATPase, transmembrane domain M
Family: Calcium ATPase, transmembrane domain M

Phyre2
6 |
| d2id3a2 |

### PDB 2id3 chain A domain 2

Region: 146 - 239
Aligned: 93
Modelled: 94
Confidence: 17.7%
Identity: 12%
Fold: Tetracyclin repressor-like, C-terminal domain
Superfamily: Tetracyclin repressor-like, C-terminal domain
Family: Tetracyclin repressor-like, C-terminal domain

Phyre2
7 |
| d2fq4a2 |

### PDB 2fq4 chain A domain 2

Region: 149 - 239
Aligned: 87
Modelled: 91
Confidence: 11.2%
Identity: 13%
Fold: Tetracyclin repressor-like, C-terminal domain
Superfamily: Tetracyclin repressor-like, C-terminal domain
Family: Tetracyclin repressor-like, C-terminal domain

Phyre2
8 |
| d2bfda1 |

### PDB 2bfd chain A domain 1

Region: 176 - 254
Aligned: 76
Modelled: 79
Confidence: 10.2%
Identity: 17%
Fold: Thiamin diphosphate-binding fold (THDP-binding)
Superfamily: Thiamin diphosphate-binding fold (THDP-binding)
Family: Branched-chain alpha-keto acid dehydrogenase PP module

Phyre2
9 |
| c3ku7B_ |

### PDB 3ku7 chain B

Region: 327 - 348
Aligned: 22
Modelled: 22
Confidence: 9.6%
Identity: 14%
PDB header:cell cycle
Chain: B: PDB Molecule:cell division topological specificity factor;
PDBTitle: crystal structure of helicobacter pylori mine, a cell division2 topological specificity factor

Phyre2
10 |
| c1mhsA_ |

### PDB 1mhs chain A

Region: 10 - 131
Aligned: 115
Modelled: 122
Confidence: 9.4%
Identity: 11%
PDB header:membrane protein, proton transport
Chain: A: PDB Molecule:plasma membrane atpase;
PDBTitle: model of neurospora crassa proton atpase

Phyre2
11 |
| c2voyB_ |

### PDB 2voy chain B

Region: 57 - 94
Aligned: 38
Modelled: 38
Confidence: 8.6%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus

Phyre2
12 |
| d1qhba_ |

### PDB 1qhb chain A

Region: 312 - 342
Aligned: 31
Modelled: 31
Confidence: 8.4%
Identity: 26%
Fold: Acid phosphatase/Vanadium-dependent haloperoxidase
Superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase
Family: Haloperoxidase (bromoperoxidase)

Phyre2
13 |
| c3trbA_ |

### PDB 3trb chain A

Region: 235 - 253
Aligned: 19
Modelled: 19
Confidence: 6.7%
Identity: 16%
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii

Phyre2
14 |
| c2xykB_ |

### PDB 2xyk chain B

Region: 159 - 211
Aligned: 53
Modelled: 53
Confidence: 6.2%
Identity: 6%
PDB header:oxygen storage/transport
Chain: B: PDB Molecule:2-on-2 hemoglobin;
PDBTitle: group ii 2-on-2 hemoglobin from the plant pathogen2 agrobacterium tumefaciens

Phyre2
15 |
| c2ebyA_ |

### PDB 2eby chain A

Region: 235 - 253
Aligned: 19
Modelled: 19
Confidence: 6.0%
Identity: 11%
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli

Phyre2
16 |
| d2icta1 |

### PDB 2ict chain A domain 1

Region: 235 - 253
Aligned: 19
Modelled: 19
Confidence: 6.0%
Identity: 5%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: SinR domain-like

Phyre2
17 |
| d2ap1a1 |

### PDB 2ap1 chain A domain 1

Region: 171 - 219
Aligned: 44
Modelled: 49
Confidence: 5.9%
Identity: 14%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: ROK

Phyre2
18 |
| c3fewX_ |

### PDB 3few chain X

Region: 67 - 120
Aligned: 54
Modelled: 54
Confidence: 5.8%
Identity: 15%
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain

Phyre2
19 |
| c2rpaA_ |

### PDB 2rpa chain A

Region: 152 - 189
Aligned: 38
Modelled: 38
Confidence: 5.3%
Identity: 11%
PDB header:hydrolase
Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1;
PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme

Phyre2
20 |
| c1o8tA_ |

### PDB 1o8t chain A

Region: 171 - 233
Aligned: 59
Modelled: 63
Confidence: 5.2%
Identity: 19%
PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein c-ii;
PDBTitle: global structure and dynamics of human apolipoprotein cii2 in complex with micelles: evidence for increased mobility3 of the helix involvved in the activation of lipoprotein4 lipase.

Phyre2
21 |
22 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1z9ha1 |
|  | 37.0 | 23 | Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain
2 | c3n8uB_ |
|  | 34.8 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:imelysin peptidase; PDBTitle: crystal structure of an imelysin peptidase (bacova_03801) from2 bacteroides ovatus at 1.44 a resolution
3 | d1tq4a_ |
|  | 31.1 | 7 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins
4 | d1qs0a_ |
|  | 29.5 | 13 | Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module
5 | d1wpga4 |
|  | 22.5 | 13 | Fold:Calcium ATPase, transmembrane domain M Superfamily:Calcium ATPase, transmembrane domain M Family:Calcium ATPase, transmembrane domain M
6 | d2id3a2 |
|  | 17.7 | 12 | Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain
7 | d2fq4a2 |
|  | 11.2 | 13 | Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain
8 | d2bfda1 |
|  | 10.2 | 17 | Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module
9 | c3ku7B_ |
|  | 9.6 | 14 | PDB header:cell cycle Chain: B: PDB Molecule:cell division topological specificity factor; PDBTitle: crystal structure of helicobacter pylori mine, a cell division2 topological specificity factor
10 | c1mhsA_ |
|  | 9.4 | 11 | PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase
11 | c2voyB_ |
|  | 8.6 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
12 | d1qhba_ |
|  | 8.4 | 26 | Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Haloperoxidase (bromoperoxidase)
13 | c3trbA_ |
|  | 6.7 | 16 | PDB header:dna binding protein Chain: A: PDB Molecule:virulence-associated protein i; PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
14 | c2xykB_ |
|  | 6.2 | 6 | PDB header:oxygen storage/transport Chain: B: PDB Molecule:2-on-2 hemoglobin; PDBTitle: group ii 2-on-2 hemoglobin from the plant pathogen2 agrobacterium tumefaciens
15 | c2ebyA_ |
|  | 6.0 | 11 | PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; PDBTitle: crystal structure of a hypothetical protein from e. coli
16 | d2icta1 |
|  | 6.0 | 5 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
17 | d2ap1a1 |
|  | 5.9 | 14 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK
18 | c3fewX_ |
|  | 5.8 | 15 | PDB header:immune system Chain: X: PDB Molecule:colicin s4; PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain
19 | c2rpaA_ |
|  | 5.3 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme
20 | c1o8tA_ |
|  | 5.2 | 19 | PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein c-ii; PDBTitle: global structure and dynamics of human apolipoprotein cii2 in complex with micelles: evidence for increased mobility3 of the helix involvved in the activation of lipoprotein4 lipase.
21 | c1zvaA_ |
| not modelled | 5.1 | 18 | PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion
22 | d2aa4a2 |
| not modelled | 5.1 | 20 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0