BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (644 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria R... 1176 0.0 UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria R... 789 0.0 UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_V... 699 0.0 UniRef50_C9R3S6 Exoribonuclease II n=7 Tax=Gammaproteobacteria R... 663 0.0 UniRef50_Q65SI5 Exoribonuclease 2 n=36 Tax=Gammaproteobacteria R... 646 0.0 UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria R... 633 e-180 UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1... 525 e-147 UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 Re... 307 7e-82 UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus ... 299 2e-79 UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella ... 283 1e-74 UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobac... 278 6e-73 UniRef50_C5BR14 Exoribonuclease II n=1 Tax=Teredinibacter turner... 272 3e-71 UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCT... 271 6e-71 UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis ME... 265 3e-69 UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n... 265 3e-69 UniRef50_A0Z0P5 Exoribonuclease R n=6 Tax=Bacteria RepID=A0Z0P5_... 248 5e-64 UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B... 226 3e-57 UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K40... 209 3e-52 UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1... 207 1e-51 UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS... 206 2e-51 UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE 206 3e-51 UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis A... 198 4e-49 UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferroox... 197 1e-48 UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group ... 196 2e-48 UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13... 195 6e-48 UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans... 194 8e-48 UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus... 194 8e-48 UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 190 2e-46 UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID... 188 6e-46 UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_... 187 1e-45 UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolit... 186 2e-45 UniRef50_Q6SG71 RNB-like family protein n=4 Tax=Bacteria RepID=Q... 186 3e-45 UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_... 185 5e-45 UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 498... 184 6e-45 UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacter... 184 9e-45 UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuc... 184 1e-44 UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID... 182 3e-44 UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria R... 182 3e-44 UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR 182 5e-44 UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR... 182 5e-44 UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbi... 181 5e-44 UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_... 181 6e-44 UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_A... 180 1e-43 UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensi... 179 2e-43 UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR4... 179 3e-43 UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobi... 179 3e-43 UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidan... 178 6e-43 UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0... 178 7e-43 UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria Rep... 177 1e-42 UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=... 176 2e-42 UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H... 175 6e-42 UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8... 174 8e-42 UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID... 174 1e-41 UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RN... 173 2e-41 UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 173 2e-41 UniRef50_B9KCI4 Ribonuclease R n=9 Tax=Epsilonproteobacteria Rep... 173 2e-41 UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=... 172 3e-41 UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaeroc... 172 3e-41 UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingell... 172 3e-41 UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7... 172 4e-41 UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_... 172 4e-41 UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus E... 172 4e-41 UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID... 172 4e-41 UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=... 171 7e-41 UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BN... 171 8e-41 UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID... 171 1e-40 UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni Re... 171 1e-40 UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 170 1e-40 UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=... 170 1e-40 UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM... 169 3e-40 UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37... 169 3e-40 UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU 169 3e-40 UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria ... 169 4e-40 UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma syn... 169 4e-40 UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE... 168 6e-40 UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH 167 8e-40 UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotr... 167 1e-39 UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9... 167 1e-39 UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_... 167 2e-39 UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yello... 166 3e-39 UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacteri... 166 3e-39 UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=... 166 3e-39 UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 165 5e-39 UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n... 165 5e-39 UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candida... 165 6e-39 UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN 164 1e-38 UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica AT... 163 3e-38 UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR... 162 3e-38 UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1... 162 3e-38 UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_N... 162 3e-38 UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimo... 162 3e-38 UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wol... 162 3e-38 UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms Re... 161 8e-38 UniRef50_A6Q7D2 Ribonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepI... 161 9e-38 UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 160 1e-37 UniRef50_Q7MQZ6 RIBONUCLEASE n=1 Tax=Wolinella succinogenes RepI... 160 1e-37 UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 ... 160 2e-37 UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 R... 159 3e-37 UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerof... 159 3e-37 UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens ... 159 3e-37 UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea p... 159 5e-37 UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 ... 159 5e-37 UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_... 158 6e-37 UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_... 158 7e-37 UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6... 157 9e-37 UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 70012... 157 1e-36 UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5... 157 1e-36 UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepI... 157 1e-36 UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovoru... 157 2e-36 UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q2... 156 2e-36 UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellular... 156 2e-36 UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ... 156 3e-36 UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID... 155 3e-36 UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RH... 155 3e-36 UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR... 154 8e-36 UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q... 154 9e-36 UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V... 154 1e-35 UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentan... 154 1e-35 UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera ara... 154 1e-35 UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13... 154 1e-35 UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdema... 152 3e-35 UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazo... 152 3e-35 UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB... 152 4e-35 UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacte... 152 4e-35 UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacte... 152 5e-35 UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU 152 5e-35 UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6... 152 5e-35 UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n... 150 2e-34 UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 606... 150 2e-34 UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ri... 150 2e-34 UniRef50_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 994... 150 2e-34 UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID... 149 3e-34 UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J... 149 3e-34 UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribo... 149 3e-34 UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia A... 149 3e-34 UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_S... 149 3e-34 UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis ... 149 4e-34 UniRef50_A1VYZ1 RNB-like protein n=15 Tax=Campylobacter RepID=A1... 149 5e-34 UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiropla... 149 5e-34 UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 154... 148 7e-34 UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deino... 148 8e-34 UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DS... 147 1e-33 UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms Re... 147 1e-33 UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID... 147 1e-33 UniRef50_C3XLE6 Ribonuclease n=1 Tax=Helicobacter winghamensis A... 147 1e-33 UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter ver... 147 1e-33 UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiacea... 147 2e-33 UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9... 147 2e-33 UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteri... 147 2e-33 UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ... 146 3e-33 UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyr... 145 4e-33 UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0L... 145 5e-33 UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma ... 145 6e-33 UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopath... 145 6e-33 UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepI... 145 7e-33 UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP 145 7e-33 UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ... 144 1e-32 UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_A... 144 2e-32 UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DS... 144 2e-32 UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatu... 143 2e-32 UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostri... 143 2e-32 UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegle... 143 2e-32 UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KP... 143 3e-32 UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum... 142 3e-32 UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax... 142 3e-32 UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n... 142 4e-32 UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bactero... 141 6e-32 UniRef50_UPI00019779BC hypothetical protein HcinC1_09125 n=1 Tax... 141 7e-32 UniRef50_Q7VIS0 Putative uncharacterized protein n=1 Tax=Helicob... 141 8e-32 UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n... 141 9e-32 UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostri... 140 2e-31 UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN 140 2e-31 UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n... 140 2e-31 UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostri... 140 2e-31 UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM ... 139 4e-31 UniRef50_Q2JIR4 Exoribonuclease, VacB/RNB family n=2 Tax=Synecho... 139 4e-31 UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacte... 138 6e-31 UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM... 138 7e-31 UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=... 137 9e-31 UniRef50_Q0GXV6 Putative ribonuclease n=1 Tax=Lactococcus phage ... 137 1e-30 UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z97... 137 2e-30 UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azoba... 136 2e-30 UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QP... 136 3e-30 UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma con... 134 9e-30 UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=... 134 9e-30 UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ... 134 1e-29 UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma... 134 1e-29 UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY... 134 1e-29 UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfo... 134 1e-29 UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n... 134 2e-29 UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic contro... 133 2e-29 UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepI... 133 2e-29 UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX... 133 2e-29 UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota R... 132 4e-29 UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoo... 132 5e-29 UniRef50_C3XDX4 Ribonuclease R n=1 Tax=Helicobacter bilis ATCC 4... 130 1e-28 UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 130 2e-28 UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kue... 130 2e-28 UniRef50_A9EZ35 Ribonuclease R n=2 Tax=Myxococcales RepID=A9EZ35... 130 2e-28 UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M94... 130 2e-28 UniRef50_A9RXJ0 Predicted protein n=1 Tax=Physcomitrella patens ... 130 2e-28 UniRef50_A8ERD9 Ribonuclease R n=1 Tax=Arcobacter butzleri RM401... 128 9e-28 UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC ... 128 9e-28 UniRef50_Q30T59 RNAse R n=2 Tax=Campylobacterales RepID=Q30T59_S... 127 1e-27 UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9... 127 1e-27 UniRef50_D1YYD5 Exoribonuclease II n=10 Tax=cellular organisms R... 127 2e-27 UniRef50_B6FY97 Putative uncharacterized protein n=1 Tax=Clostri... 126 2e-27 UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group Re... 126 3e-27 UniRef50_A8ZPG0 Exoribonuclease II n=2 Tax=Acaryochloris marina ... 126 3e-27 UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyo... 124 8e-27 UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus ... 124 9e-27 UniRef50_C7JES0 Ribonuclease R n=8 Tax=Acetobacter pasteurianus ... 124 1e-26 UniRef50_C9RQ37 VacB and RNase II family 3'-5' exoribonuclease n... 124 1e-26 UniRef50_B7FWN1 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 124 1e-26 UniRef50_Q01V71 Exoribonuclease II n=1 Tax=Candidatus Solibacter... 124 2e-26 UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ell... 123 2e-26 UniRef50_B8C1F9 Ribonuclease (Fragment) n=1 Tax=Thalassiosira ps... 123 3e-26 UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosacch... 122 5e-26 UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA 120 1e-25 UniRef50_C1N1M6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 120 1e-25 UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariop... 120 1e-25 UniRef50_B4PC29 GE21064 n=5 Tax=Drosophila RepID=B4PC29_DROYA 120 2e-25 UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n... 120 2e-25 UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured mar... 119 3e-25 UniRef50_D0MFD3 Exoribonuclease II n=1 Tax=Rhodothermus marinus ... 119 4e-25 UniRef50_Q9ZJX9 Ribonuclease R n=18 Tax=Helicobacter RepID=RNR_H... 119 4e-25 UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 T... 119 4e-25 UniRef50_C0QWY3 Exoribonuclease R n=1 Tax=Brachyspira hyodysente... 118 7e-25 UniRef50_C1MNB1 Predicted protein (Fragment) n=1 Tax=Micromonas ... 118 7e-25 UniRef50_A5GTC0 Exoribonuclease R/ribonuclease II n=1 Tax=Synech... 117 9e-25 UniRef50_B8GHD2 Ribonuclease II n=1 Tax=Methanosphaerula palustr... 117 9e-25 UniRef50_C1QCY4 Exoribonuclease R n=1 Tax=Brachyspira murdochii ... 117 1e-24 UniRef50_C1F2P6 Rnb family protein n=1 Tax=Acidobacterium capsul... 117 2e-24 UniRef50_Q8IRJ7 CG16940, isoform C n=5 Tax=melanogaster subgroup... 117 2e-24 UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 ... 117 2e-24 UniRef50_A6DIQ3 Exoribonuclease, VacB/RNB family protein n=1 Tax... 116 3e-24 UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metaz... 116 3e-24 UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis R... 116 3e-24 UniRef50_UPI00006CBEC4 RNB-like protein n=1 Tax=Tetrahymena ther... 116 3e-24 UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_... 115 4e-24 UniRef50_Q09568 Uncharacterized ribonuclease F48E8.6 n=3 Tax=Cae... 115 4e-24 UniRef50_A0LG74 Exoribonuclease II n=1 Tax=Syntrophobacter fumar... 115 5e-24 UniRef50_A5GLA4 Exoribonuclease R/ribonuclease II n=2 Tax=Synech... 115 6e-24 UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 87... 115 8e-24 UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloac... 114 8e-24 UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 ... 114 8e-24 UniRef50_Q1NRA8 Exoribonuclease II n=1 Tax=delta proteobacterium... 114 9e-24 UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila... 114 1e-23 UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes sc... 114 1e-23 UniRef50_UPI0001C32480 Exoribonuclease II n=1 Tax=Conexibacter w... 114 2e-23 >UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria RepID=RNB_ENT38 Length = 644 Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/643 (86%), Positives = 602/643 (93%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 M QDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDR+ Sbjct: 1 MLQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 AVIH++K+RE+AEPEEL+EPFLTRFVGKV K+DRL+IVPDHPLLKDAIPCRA R H Sbjct: 61 TAVIHTQKDRETAEPEELIEPFLTRFVGKVHKKDDRLSIVPDHPLLKDAIPCRADRNCEH 120 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 +FKEGDWAVA+MRRHPLKGDR FYA+LT +IT+ DDHFVPWWVTLARHNLEKEAP+GVAT Sbjct: 121 DFKEGDWAVAQMRRHPLKGDRGFYADLTHFITYSDDHFVPWWVTLARHNLEKEAPNGVAT 180 Query: 181 EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 EMLDEGL R DLTAL+FVTIDSAST+DMDDAL+ + D KL L VAIADPTAWIAEGSK Sbjct: 181 EMLDEGLERRDLTALNFVTIDSASTQDMDDALYVEEGADGKLHLTVAIADPTAWIAEGSK 240 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD +AK+RAFTNYLPGFNIPMLPRELSDDLCSLR N++RPVLACRMT++ADGTIED+IEF Sbjct: 241 LDDSAKVRAFTNYLPGFNIPMLPRELSDDLCSLRPNQIRPVLACRMTIAADGTIEDDIEF 300 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 FAATIESKAKL YD VS+WLE G+W+PESEAIA+Q+ LL ++C RGEWR HALVFKD Sbjct: 301 FAATIESKAKLAYDDVSNWLEGAGNWKPESEAIAQQITLLQRVCLSRGEWRKTHALVFKD 360 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 RPDYRF+LGEKGEVLDIVAEPRRIANRIVEE+MIAANICAARVLRDKLGFGIYNVH GFD Sbjct: 361 RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHTGFD 420 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE 480 PAN +ALAALLKTH +HVD +EVLTL+GFCKLRRELDAQP+GFLDSRIRRFQS+AEISTE Sbjct: 421 PANTEALAALLKTHDVHVDPQEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSYAEISTE 480 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM 540 PGPHFGLGLEAYATWTSPIRKYGDM+NHRLLKA++KGET RPQDE TVQMAERRRLNRM Sbjct: 481 PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIVKGETIARPQDEATVQMAERRRLNRM 540 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AERDVGDWLYARFL DKAGTDTRFAAEI+DISRGGMRVRLV+NGA+AFIPAPFLHAVRDE Sbjct: 541 AERDVGDWLYARFLSDKAGTDTRFAAEIIDISRGGMRVRLVENGAVAFIPAPFLHAVRDE 600 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 LVCSQENG+VQIKGETVYKVTDVIDV IAEVRMETRSIIARPV Sbjct: 601 LVCSQENGSVQIKGETVYKVTDVIDVNIAEVRMETRSIIARPV 643 >UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria RepID=RNB_BUCA5 Length = 649 Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/646 (56%), Positives = 485/646 (75%), Gaps = 5/646 (0%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL QLK+ LH+++PR EG+VK+TE+GFGFLEVD QKSYFIPP MK VMHGD+I Sbjct: 1 MFQNNPLLTQLKKNLHAKSPRVEGIVKSTERGFGFLEVDPQKSYFIPPKNMKNVMHGDKI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 IA++ +EK+RE EPE+L+EPFL RFVGK++ K++RL IVPD+P LKD I C+ + + Sbjct: 61 IALLTTEKDREIVEPEKLIEPFLNRFVGKIEKKDNRLFIVPDYPFLKDLITCQPNKNCIN 120 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 F+ GDWAVA++++H LKGD FYAELT+ IT DD +PWWVTLARH+L+++ P +A Sbjct: 121 IFQNGDWAVAQLKKHKLKGDHLFYAELTEKITQEDDPLIPWWVTLARHDLDRKEP--LAE 178 Query: 181 E---MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 E +L E R+DLT LDF+TID+ +T+D+DDALF + + LIVAIADPTA+I Sbjct: 179 EDDLILKESDNRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKH 238 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 GSKLD A R FTNYLPGFNIPMLPR LS+D+CSL N+ RPVLAC +T+ +G I + Sbjct: 239 GSKLDVIASKRIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNK 298 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 IEFF A I+SK+KL YD VSDW+E G W P +++IA Q+ +L ++C R +WR +A++ Sbjct: 299 IEFFLAWIKSKSKLSYDHVSDWIEKIGSWIPPTKSIANQILILHRLCLLRIKWRKKNAVL 358 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 FKD +YRF + E G+++D++ E RRIA++I+EE+MI ANI AA L +GFGIYNVH Sbjct: 359 FKDSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKNIGFGIYNVHS 418 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI 477 GFD NA+ + L+++ L+ +E+ TL GFC LRR L+ ++DSRIRRFQSF + Sbjct: 419 GFDLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYIDSRIRRFQSFGDF 478 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRL 537 ST PGPHF LG YATWTSPIRKY DMINHRLLK++IK E + +P ++I ++++E+RR Sbjct: 479 STIPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSIIKKEKSIKPGEDIKIKISEQRRR 538 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 NRMAERDV DWLY FL+ K + +F AEI DISR G+R RL++NGA FIP +H + Sbjct: 539 NRMAERDVSDWLYTIFLQKKKYQNQKFNAEITDISRSGIRARLIENGANVFIPGTLIHPI 598 Query: 598 RDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 R+EL +QE+G V I G YK++D+I VT++++R++TRSIIA+PV Sbjct: 599 REELNFNQESGKVFINGIMHYKISDLIQVTLSDIRLKTRSIIAKPV 644 >UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_VIBC3 Length = 678 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/651 (52%), Positives = 454/651 (69%), Gaps = 9/651 (1%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQDNP LAQLKQ++ P+ EG +KA++KGFGFLEVD++ SYF+PPP MKK MHGD++ Sbjct: 1 MFQDNPRLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD-AIPCRAARGLN 119 +A I +E ERE AEP EL+E LTRF+G+V+ +L + PDHP LK ++ + +GLN Sbjct: 61 VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN 120 Query: 120 H-EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV 178 +F+EGDW VA + RHPLKGD F+ +++ IT +D PWWVTLA ++L P G+ Sbjct: 121 EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI 180 Query: 179 ATEML--DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 L D LVREDLTAL FVTID ST+DMDDAL+A+ LP+ L +AIADPTA+I Sbjct: 181 DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 ++DK A+ R FT YLPG NIPMLPR+L+D+LCSL N+VRP L C +T+ DG I D Sbjct: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300 Query: 297 NIEFFAATIESKAKLVYDQVSDWLE--NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 +I FFAA I+S A+LVYD VSDWLE ++ WQP SE IA+ VR L Q R W H Sbjct: 301 DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQP-SEEIAQVVRDLYAFSQARANWCETH 359 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 A+VF DRPDYRF L +V+ I A+ RR ANR+VEE+MI ANICA + L+ GFG++N Sbjct: 360 AVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFN 419 Query: 415 VHMGFDPANADALAALLKTHGL-HVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQS 473 H GF + L+ +G + DAE + T++GF LRR L Q T +LD+RIR++QS Sbjct: 420 THAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQS 479 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-ITVQMA 532 ++EI +P PHF +GL+ YATWTSPIRKYGDMINHRLLKA I G+ + DE + ++A Sbjct: 480 YSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELA 539 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP 592 R+ +++AER+V DWLYAR L D+ +TRF AEI DI+R GMRVRL++NGA+AFIP Sbjct: 540 LHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGA 599 Query: 593 FLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + ++ + C+ E+GT+ I E VYK+ DV+++ + EV E RS++ +P Sbjct: 600 LILDNKERIECNGEDGTILIDKEVVYKLGDVLEIVLTEVNQENRSLVGKPT 650 >UniRef50_C9R3S6 Exoribonuclease II n=7 Tax=Gammaproteobacteria RepID=C9R3S6_AGGAD Length = 659 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/656 (49%), Positives = 437/656 (66%), Gaps = 17/656 (2%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQDNPLLAQLKQQ+H R EG VK+T+K +GFLE + +KSYFI PP MKKVMHGD+I Sbjct: 1 MFQDNPLLAQLKQQIHDSKERVEGTVKSTDKAYGFLECE-KKSYFIAPPAMKKVMHGDKI 59 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQ-GKNDRLAIVPDHPLLKDAIPCRAARGLN 119 A I + ++E AEPE L+EP LTRF+ KV+ K+ +L ++ DHP + I + + Sbjct: 60 SATIEKQGDKEQAEPEALIEPILTRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQNKSVK 119 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 E +EGDW VA ++ HPL+ DR FYA++TQ+I DD PWWVTLARH +E G Sbjct: 120 KELQEGDWVVASLKTHPLRDDRFFYAQITQFICHADDELAPWWVTLARHEQPREPVQGQD 179 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDK----LQLIVAIADPTAWI 235 + + RE+LTAL FVTIDS +T+DMDDAL+ + L + QL+VAIADPTA+I Sbjct: 180 QYEMQDKETRENLTALHFVTIDSETTQDMDDALYIEPLTSNNEQTGWQLLVAIADPTAYI 239 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 + S+++K AK R FTNYLPGFNIPMLPRELSD+LCSL+ NE RP L C + G I Sbjct: 240 SLDSQIEKDAKQRCFTNYLPGFNIPMLPRELSDELCSLKPNETRPALVCYIQTDLQGNII 299 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGD-WQPESEAIAEQVRLLAQICQRRGEWRHNH 354 +F A ++SKAKL Y +VSD+LE + WQPE++ +A+Q+ L Q R +WR H Sbjct: 300 APAKFVLANVQSKAKLTYSRVSDYLEGKENAWQPENQDMAQQIHWLHQFSLARTQWRKTH 359 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 AL+FK++PDY F+LGE G+V +I AE RRIAN+IVEE+MI ANICAA+ L+ L GI+N Sbjct: 360 ALLFKEKPDYSFVLGENGKVQEIKAEYRRIANQIVEESMIIANICAAQFLQKNLQCGIFN 419 Query: 415 VHMGFDP-----ANADALAALLKTHG-----LHVDAEEVLTLDGFCKLRRELDAQPTGFL 464 H GFD A+ LA+L E + TL+G+C++R +++ +L Sbjct: 420 THSGFDKKFLENAHHFLLASLANEENKAELQARYTVEHLATLNGYCQMRHDIEPIEGDYL 479 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + R+RRF +FAE E PHFGLGL YATWTSPIRKY DM+NHRL+KA + +P+ Sbjct: 480 EFRLRRFLTFAEFKAELAPHFGLGLNGYATWTSPIRKYSDMVNHRLIKAYLAHRPYEKPE 539 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 + + V++ E RR NR+ ERD+ DWLY R+L DK F AE+ DI+RGG+RV L+ NG Sbjct: 540 ESVLVRLQEARRQNRLVERDIADWLYCRYLADKVAEKVEFEAEVQDITRGGLRVLLLANG 599 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 A FIPA LH ++E+V + + +K + +YK+ D++ V + EV+ TRSI+ Sbjct: 600 ASIFIPASTLHDNKEEIVINTDEIAFYVKDQRLYKIGDILRVQLTEVKEATRSIMG 655 >UniRef50_Q65SI5 Exoribonuclease 2 n=36 Tax=Gammaproteobacteria RepID=RNB_MANSM Length = 659 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/660 (48%), Positives = 431/660 (65%), Gaps = 18/660 (2%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL+QLKQQLH P EGVVK T+K +GFLE + ++++FI PP MKKVMHGD+I Sbjct: 1 MFQNNPLLSQLKQQLHDSKPHVEGVVKGTDKAYGFLETE-KETFFIAPPAMKKVMHGDKI 59 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQ-GKNDRLAIVPDHPLLKDAIPCRAARGLN 119 A I + +++ AEPEEL+EP LTRF+ KV+ K+ +L ++ DHP + I A+ + Sbjct: 60 KAAIETIGDKKQAEPEELIEPMLTRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQAKTVK 119 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 E KEGDW VA ++ HPL+ DR FYA++ ++I +D F PWWVTLARH + G Sbjct: 120 QELKEGDWVVATLKTHPLRDDRFFYAQIAEFICSAEDEFAPWWVTLARHEQSRYPVQGQE 179 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKAL--PDDK---LQLIVAIADPTAW 234 + + R DLTAL FVTIDS +T+DMDDAL+ + + P+D+ +L VAIADPTA+ Sbjct: 180 VYSMLDTETRRDLTALHFVTIDSENTQDMDDALYIEPVTAPNDEQTGWKLAVAIADPTAY 239 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 IA S+++K A+ R FTNYLPGFNIPMLPRELSD+LCSL NE R L CR+ G I Sbjct: 240 IALDSQIEKDARKRCFTNYLPGFNIPMLPRELSDELCSLMENETRAALVCRLETDMQGEI 299 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGD-WQPESEAIAEQVRLLAQICQRRGEWRHN 353 EF A ++SKAKL Y+ VSD+LE + WQPE+E+ +Q+ L Q R WR Sbjct: 300 VGEPEFILAQVQSKAKLAYNNVSDYLEQVENAWQPENESTQQQINWLHQFALVRINWRKK 359 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 H L+FK++PDY F+L + G V +I AE RRIAN+IVEE+MI ANIC A L GI+ Sbjct: 360 HGLLFKEKPDYSFVLADNGHVREIKAEYRRIANQIVEESMIIANICCAHYLAKNAQTGIF 419 Query: 414 NVHMGFD----PANADALAALLKTH------GLHVDAEEVLTLDGFCKLRRELDAQPTGF 463 N H+GFD P + L A L E + TL G+C++R +++ + Sbjct: 420 NTHVGFDKKFLPNAHNFLMANLSNEENQQELAERYSVENLATLAGYCRMRHDIEPIEGDY 479 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 L+ R+RRF +FAE +E PHFGLGL YATWTSPIRKY DM+NHRL+KA + +P Sbjct: 480 LEFRLRRFLTFAEFKSELAPHFGLGLTGYATWTSPIRKYSDMVNHRLIKACLANRECVKP 539 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 DE ++ E R+ NRM ERD+ DWLY R+L DK ++ F AE+ D RGG+RV+L++N Sbjct: 540 SDETLARLQEARKQNRMVERDIADWLYCRYLADKVESNPEFRAEVQDCMRGGLRVQLLEN 599 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 GA F+PA +H +DE+ + + + I GE YK+ D++++ + EV+ ETRS+I V Sbjct: 600 GASVFVPASSIHPNKDEIQVNTDELALYINGERRYKIGDIVNIRLTEVKEETRSLIGNLV 659 >UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria RepID=A6F7X7_9GAMM Length = 647 Score = 633 bits (1633), Expect = e-180, Method: Compositional matrix adjust. Identities = 316/646 (48%), Positives = 425/646 (65%), Gaps = 7/646 (1%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MF+DNPLL+QLKQ + TP EG VK TE+GFGFLE D +SYFI PP MKK+MHGDRI Sbjct: 1 MFRDNPLLSQLKQNMRQNTPSVEGTVKGTERGFGFLEADDGESYFIAPPHMKKIMHGDRI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR-GL- 118 A I + ++ SAEP+ LVE LTRF+ ++ ++L ++ D P++ +P RA GL Sbjct: 61 KAYIETNGDKTSAEPDTLVEAKLTRFIARISMTKNKLTVLADSPVIN--MPIRAKLVGLG 118 Query: 119 NHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV 178 + +GDW VA+++ H LK D SF AE+T ++ D PWWVTLAR +L K+ P Sbjct: 119 KQKVNDGDWVVAQLKSHALK-DGSFAAEVTGFVATATDPNAPWWVTLARQDLAKDVPAMP 177 Query: 179 ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 + + R DLT F TIDSAST+DMDDAL + + L++ VAIADPT++I Sbjct: 178 DSVEFKDDTTRIDLTDKPFFTIDSASTQDMDDALLIEKTAEGNLKVTVAIADPTSYIPAD 237 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S+L+K A RAFT YLPG NIPM+PRELSD +CSL A E RP L C T+ DG + + Sbjct: 238 SELNKIAAERAFTVYLPGRNIPMMPRELSDSVCSLVAGEKRPTLCCTYTIQEDGALAEEF 297 Query: 299 EFFAATIESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 EFF A I S+ KL Y QVS+W+E + +WQPE++ +AEQ++ LA + R +WR N+A+V Sbjct: 298 EFFTAWITSQHKLSYTQVSNWIEEVSTEWQPEAQ-LAEQLQSLATFARHRQQWRKNNAIV 356 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 F D+PDY F L E G VL I E RRIAN+++EE M+AANI AAR+ R G++N H Sbjct: 357 FPDQPDYSFELDETGNVLAIHVEHRRIANQMIEETMVAANITAARLFRQNGDVGVFNTHA 416 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI 477 GFDP D + LL HG+ E + +L G+ +L+R L + LDSR+RR QS++ I Sbjct: 417 GFDPEKIDLVVELLTEHGIECTKEHIQSLPGYVELQRTLAEKANPALDSRLRRMQSYSII 476 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRL 537 S HF +GL+ YATWTSPIRKYGD+INHRL+KA + +A ++ + M+ERRR Sbjct: 477 SASAERHFAMGLDGYATWTSPIRKYGDIINHRLIKATLTNGSAPSATEDEVILMSERRRQ 536 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 +RMAERD+ WLY +L + F A I+D++RGG+RVRL++NGA+AFIPA LH Sbjct: 537 HRMAERDISSWLYVDYLTPAVESKQAFEASIMDVNRGGLRVRLLENGAVAFIPASLLHDN 596 Query: 598 RDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + E+ C E G + IK + Y + DVI V IAE+ E R+I+A+PV Sbjct: 597 KKEVKCLVETGQISIKDQVEYSLGDVIYVNIAEINKEKRNIVAKPV 642 >UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1SWZ6_PSYIN Length = 656 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 268/650 (41%), Positives = 410/650 (63%), Gaps = 12/650 (1%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL+QLK+Q+ P+ +G VKAT++G+GFLE D K +FIPP +MKKV+HGD+I Sbjct: 1 MFQNNPLLSQLKKQIQEDIPKRQGKVKATDRGYGFLETDKGKRFFIPPSEMKKVLHGDQI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 A I + ++ +AEP +L + F+ ++ K ++I+P +PLLK + ++ L Sbjct: 61 NAFIRGKGDKSTAEPNQLKKTGSAVFIARLVIKQKNISIIPKNPLLKGFFKIKGSQSLQS 120 Query: 121 E-FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD-GV 178 +++GDW E+ H L+G+ F ++ + I D F +T+A HNL +AP+ Sbjct: 121 RGYQDGDWVKVELVSHALEGN-GFLTQIIEKIADASDPFAYRLLTVATHNLANKAPEFDH 179 Query: 179 ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 +++D L R DLT F TID +T+DMDDAL+ +A ++ +L VAI+DP+A++ E Sbjct: 180 PWKIIDPQLSRSDLTKTPFFTIDGVNTQDMDDALYIEA-DENGWKLTVAISDPSAYVPEN 238 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S +D AK RAFT YLP FN+PMLPR+LSD LCSL+ E R L C + ++ G IE Sbjct: 239 SDMDAEAKRRAFTLYLPNFNVPMLPRDLSDSLCSLKEGEKRATLCCTIHINKKGEIEGEP 298 Query: 299 EFFAATIESKAKLVYDQVSDWLEN---TGD-WQPESEAIAEQVRLLAQICQRRGEWRHNH 354 F+ A I+S +L Y VS++LEN + D W+P ++ +AEQ+R L + +R +WR ++ Sbjct: 299 AFYGAWIKSHYRLNYTDVSNYLENEELSNDCWKPSTQ-LAEQLRTLDSLSLKRLQWRTDN 357 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 VFK++PDY L KGE+ +I+ EPRR ANR+VEE+MIAANICA L G++N Sbjct: 358 NAVFKNQPDYTLKLNNKGEISEILCEPRRSANRLVEESMIAANICAGDFLAKHKQQGVFN 417 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSF 474 H GF + +LL G+ D + + T+ G+ K+R++ + +LD R+R+ S+ Sbjct: 418 THSGFSSERLGKVVSLLSEFGIESDIQTLATVTGYTKIRQQTNLLHNSYLDHRLRKLLSY 477 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAER 534 A+I P HF LG++ YATWTSPIRKYGD++NHRL+K+V+ E + +EI + Sbjct: 478 ADIKNTPEAHFTLGVDHYATWTSPIRKYGDLLNHRLIKSVLLKEDNIQIDNEIGQVLNAA 537 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R+L R+AERDV + LY+++LK++ + R+ AEI DI + G+RV++ +NGA FIP L Sbjct: 538 RKLQRLAERDVNNILYSQYLKNQVESKWRYKAEIFDIIKAGIRVKIQENGATFFIPCSLL 597 Query: 595 ---HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + ++ C+Q G V I +T ++ DVIDV + V++E+ +I + Sbjct: 598 CKDSSDATKIDCNQALGKVIIAQQTELQLGDVIDVMLNNVKVESGQLIGK 647 >UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LP7_SACD2 Length = 646 Score = 307 bits (787), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 224/648 (34%), Positives = 347/648 (53%), Gaps = 38/648 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI-IAVIHS 66 L+QLKQ +H A G V +T FGF+ + + F+ P +M+ V+ GD + I V + Sbjct: 10 LSQLKQAIHESKEYATGTVASTNGRFGFVRLTDGRDAFLDPEKMQFVLPGDEVKILVTTN 69 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD--AIPCRAARGLNHEFKE 124 +K++ A E+L++ L RFVG + K + VPD P + IP ++ +G KE Sbjct: 70 DKKQLEATIEQLIDSPLKRFVGTYRVKGNAHFAVPDDPKVNRWIFIPPKSRKGC----KE 125 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE---KEAPD----- 176 G+ A++ +HP + D A++ + I DDH + + T+A+++L KE D Sbjct: 126 GEKIAAKIIQHPAQ-DGKAQAKVIERIGQPDDHHIEYKYTVAKYDLSPWNKEGEDEQLKK 184 Query: 177 ---GVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + E E RED T L FVTIDS +T DMDDA+ A D K L VAIADP + Sbjct: 185 IRASIEAEEFGE---REDYTQLPFVTIDSPTTRDMDDAVHI-AEQDGKTVLTVAIADPAS 240 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 +IA GS L K A+ +A + Y+ G IPMLP L++D SL + RP L C +TL+ DG Sbjct: 241 FIAPGSPLAKLAERQAQSTYMLGGIIPMLPESLANDCFSLVEGKKRPALVCTITLANDGA 300 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 +ED +F A I+SK KL Y QV+++LE T ++A A+ + L+++ R ++R Sbjct: 301 VED-YKFERAVIQSKYKLNYQQVAEFLEGTNIEGLPADA-ADNISKLSELATLRYQYRTE 358 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-RDKLGFGI 412 H L+ +D+ DY L +KG++ +I R +A+++VEEAM+ N CA L ++KL G+ Sbjct: 359 HNLIGQDQLDYDIRLDDKGKISEIRPRSRTVAHKLVEEAMLLTNQCAGEFLAQNKL--GL 416 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRF 471 + VH GF + ALLK + + ++ L+G +L + L A + L +RR Sbjct: 417 HTVHGGFRLDRIGEVNALLKEEQITPEG-DITELEGNLQLIKALSANERQRNLIPALRRM 475 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM 531 AE+S E GPH G+G + YAT TSPIR+Y D+ NH + +V+ G + ++ Sbjct: 476 MQSAELSDEAGPHMGMGFKHYATSTSPIRRYADLYNHWAIHSVLTGSKPYTFKPHQLERL 535 Query: 532 AERRRLNRMAERDVGDWLYARFLKDK-AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 E + R A+R++ WL ++++ G + R IV ++ G VRL++NG FI Sbjct: 536 KETLQAGRQADREIYQWLLCQYVEASLIGFEGRGKVRIV--TQQGFGVRLIENGVDGFIA 593 Query: 591 APFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 P E + T+ + G T Y+ +DV + V E R I Sbjct: 594 FP----KSQEKQFDAKRMTLTVNGVT-YRADCEVDVKVVSVDQEKRRI 636 >UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIE9_CELJU Length = 664 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 218/651 (33%), Positives = 326/651 (50%), Gaps = 34/651 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 LA LK L +Q A+G ++ T K FGF+ +D + F+ P Q+ +V+ DR A I + Sbjct: 10 LASLKSSLVAQKDIAQGTIRTTTKRFGFILLDDGREAFLDPEQILRVLPEDRAEAEITTN 69 Query: 68 -KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD--HPLLKDAIPCRAARGLNHEFKE 124 K + A+ +L+ L FVG+ K + PD H +P + +GL E Sbjct: 70 AKGQYEAKLTKLLHSNLQEFVGRYVSKGTNFFVEPDLVHFNRWLFVPPQDRKGLT----E 125 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV---ATE 181 GD ++ RHP D + + + D+ + +AR L E P A+ Sbjct: 126 GDLVHCQVARHPFHCDGKAQVHILKRLGNVDEPGIESRYAIARFQLPCEWPPAAQNQASS 185 Query: 182 MLDEGLV----REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 + LV EDLT L FVTIDS ST DMDDA+ +A + +L AIADPT I Sbjct: 186 IHWSPLVFENNEEDLTQLPFVTIDSESTRDMDDAVCIQA-TEHGWELFSAIADPTKHIDF 244 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S L++AA+ RA T+Y+ G + MLP +LS D SL A + RP L CR+ + DG IE + Sbjct: 245 DSPLEQAARERASTHYILGNTLTMLPVDLSQDTYSLVAEQKRPALVCRIHIRNDGHIE-S 303 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 F A I S+ KL Y V D+L + S+ + Q+ +L R ++R H L+ Sbjct: 304 FAFSEAVIRSRQKLSYQGVYDFLTTAAETNL-SDELRTQLTMLRDFALARSQYRQQHNLL 362 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 +++PDY+FIL E+ ++ + R IA+RIVEEAM+A N+CA + G+GI++ H+ Sbjct: 363 MEEKPDYQFILNEQKKIERVEKRDRTIAHRIVEEAMLATNLCAGELFSQHPGYGIFSGHI 422 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-----TGFLDSRIRRFQ 472 GF P + AL++ + ++ L F L REL P L S ++R Sbjct: 423 GFRPERVNDAVALIQEDRPDLSPGDLSQLKDFLNLFRELRQNPGQHPANAALHSLLQRQL 482 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD--EITVQ 530 +S EP PHFGLG AYA TSPIR+Y D NH +K +++GE + E + Sbjct: 483 QAGALSQEPVPHFGLGFNAYAMVTSPIRRYNDFFNHLGIKRLLRGEPPLALDNLVEFVER 542 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 + + L R A R WL +++ G + I ++ G+ VRL D G FIP Sbjct: 543 LQHKLNLGRQACRFTETWLACQYMNQHIG--SVHTGNIALVNSTGIGVRLDDWGMEGFIP 600 Query: 591 APFLHAVRDELVCSQENG---TVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 RD + +Q + ++ + G T YK+ +V+ V I EV + R + Sbjct: 601 L----VPRDSDIKAQFDSRRLSLNVNGNT-YKLDEVVQVVIDEVDVSKRRV 646 >UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N135_9GAMM Length = 658 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 195/598 (32%), Positives = 307/598 (51%), Gaps = 31/598 (5%) Query: 8 LAQLKQQLHS--QTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI-IAVI 64 L LK Q+ + + EG V+ + FGF+ + +S+F+PP +M KV GD I + Sbjct: 32 LKSLKTQIKTDQEANLQEGTVRGSAGRFGFVSNEQGESFFLPPDEMAKVFPGDEIRFSTK 91 Query: 65 HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD--AIPCRAARGLNHEF 122 +K + A E+L++ + F G + +VPD L + IP A + +N Sbjct: 92 EDDKGKTQAIVEKLIKSYFKSFCGYFVKRGKAQFVVPDIHQLNNWIYIPPEACKDVN--- 148 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 E DW E+ RHP + L + F + + + NL E PD +++E+ Sbjct: 149 -ENDWLQCEVTRHPYPKGKPQAKILKNLGQLSEPGFERQYA-ITKFNLSHEWPDIISSEL 206 Query: 183 ----------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 L EG R DL+ FVTIDS T DMDDAL+A+ +D +L VAIADP+ Sbjct: 207 AILGEDRIPALSEG--RVDLSDHAFVTIDSEHTRDMDDALYAEK-TEDGYRLHVAIADPS 263 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 AW + LD+ A+ R + Y PG ++ MLP+ELS+ LCSL E R L C +++ DG Sbjct: 264 AWFGPNTSLDREARSRGNSLYFPGRSLAMLPQELSNGLCSLLEGEKRLALVCVLSIGTDG 323 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 + ++ EF AT+ S AKL Y+QV+++LE G+ + + + +L + Q + R Sbjct: 324 EL-NHYEFKEATVTSHAKLSYNQVTEFLE--GEKDAVKAELQDSLLILHETTQALHQGRI 380 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + L+ +DR DY +G+ G++ IV R A ++VEEAM+AAN A+ L++ +G GI Sbjct: 381 RNNLIMEDRDDYYLTVGDNGKLQSIVRTERNTAQKLVEEAMLAANKSCAQFLKE-IGIGI 439 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSRIRRF 471 + H GF + +++ + + L+G+ L R +DA+ + + + RF Sbjct: 440 FVDHPGFRTERIGDIKQIVQDKEIGFEG-NFAELEGYKSLIRAVDAKEFDEPIKTLLSRF 498 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM 531 S +E S E PH G+G E Y T+TSPIRKY D++ HR++KA + + DE + Sbjct: 499 LSRSEYSLEAKPHMGMGFECYTTFTSPIRKYSDLLIHRIIKAHLSEQKQLEINDETIALL 558 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R A WL ++L DK + +F I I+ GG+ V + + G FI Sbjct: 559 QDALVTGRRAVNLAEHWLKLQYL-DKL-KENQFDGVISQINPGGLTVTITELGLDGFI 614 >UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8Y7_9GAMM Length = 663 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 204/655 (31%), Positives = 336/655 (51%), Gaps = 34/655 (5%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 MF ++ L L QLK+ + AEG+VK T++ FGF+ + + F+ P +M KV GD Sbjct: 1 MFDNSTLSQLKQLKKDIEDSKEYAEGIVKGTQRKFGFVVLADGREIFLNPDEMTKVFPGD 60 Query: 59 RIIAVIHSEKER---ESAEP------EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA 109 + +I +E+ + ++A+P + L++ L F G+ K + PD P L Sbjct: 61 NVKILITTEQSKTKDKNAKPKVSGVLQALLQSPLKEFNGRYIIKGQGHFVEPDLPQLNRW 120 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 I A N GD+ ++ RHP ++ A++ + I + + ++ Sbjct: 121 IFIPPAARKNAA--AGDYIRCKLSRHPYPNEKP-QAKILEVIGNLEKKGIETEYVTSKFQ 177 Query: 170 LEKEAPDGVATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 L+ D + D R+D+ + FVTID+AST DMDDAL+ D+ +L+VAI Sbjct: 178 LDPVWKDNWEESLADIDFSQRKDMQDIPFVTIDAASTRDMDDALYVSK-SDNGWRLLVAI 236 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 ADP A+I S+LDK RA + Y+PG+ IPMLP +L++DLCSL ++VRP L C++ + Sbjct: 237 ADPGAFIISNSELDKQIAQRAISTYMPGYAIPMLPAKLANDLCSLAPDQVRPALICQIDI 296 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRG 348 +A G I + A + SKAKL YD VS +L+ D ++ + +L Q+ + Sbjct: 297 NATGDIVSH-NIVEAVMSSKAKLSYDDVSRFLDQRDDTITSADC-SNHGHVLTQLKELSD 354 Query: 349 EW---RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 R + LV +RPD R +L G++ I + + A+++VEE MI AN C ++L Sbjct: 355 ALLINRKENHLVIPNRPDLRLVLNANGKMDRIELQNKNSASQVVEECMILANRCVTQILD 414 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-L 464 D I+ H GF P + L + L + +V DG+ + + +D F L Sbjct: 415 DD---AIFVSHPGFRPERVADVCKLAEEQ-LSLTDIDVTQPDGYRHIMKSIDDDALDFPL 470 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + + R S A +S + PHFG+GL +Y T+TSPIRKY D++ HR++K ++G TR Sbjct: 471 RAVLSRLLSRARLSNKRLPHFGMGLSSYTTFTSPIRKYTDLLVHRIIKEKLRGLPPTRCS 530 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 DE + +R+ +R A + WL +F++ G + F + I+ G VR+ +N Sbjct: 531 DEQLEAIQQRQDNSRQARSQMEQWLKCQFIQPLVGQN--FIGRVSQINSNGFTVRIDENL 588 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQIKGETV-YKVTDVIDVTIAEVRMETRSI 638 F+ L D+ S + +++K +T+ ++ I++ + EV + RSI Sbjct: 589 IEGFVETRILP---DKY--SFDPMRLRLKSKTLTIELDQAIEIIVKEVDCDQRSI 638 >UniRef50_C5BR14 Exoribonuclease II n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR14_TERTT Length = 655 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 207/658 (31%), Positives = 344/658 (52%), Gaps = 44/658 (6%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI-IAVIHS 66 L+QLK + + G V T FGF+ ++ + F+ P +M++V+ GD++ +++ + Sbjct: 10 LSQLKSDIQAAKEYGVGHVAGTNGRFGFVRLEDGRDAFLSPEKMQRVIPGDKVKVSLTKN 69 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVP--DHPLLKDAIPCR------AARGL 118 +K++ A E L+E L+RF+G+ + +VP + P LK + R +RG Sbjct: 70 DKDQLEATLESLLEQSLSRFLGQYRVTKKGHFVVPLGNAPGLKSSPINRWIFLPPKSRG- 128 Query: 119 NHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE------- 171 K+GD VA +++HP ++ L D H +V+ A+++L+ Sbjct: 129 --RCKDGDMVVARLQQHPYDDGKASARILENIGQENDPHIERLYVS-AKYDLQPRYSEPA 185 Query: 172 -KEAPDGVATEMLDE--GLVREDLTALDFVTIDSASTEDMDDALFAKALPDD---KLQLI 225 K+ D +A E G R D T + FVTID+ +T DMDDA+ D + QL Sbjct: 186 QKQTKD-IARSFKSEQFGAERTDFTEVPFVTIDAETTRDMDDAVALTVNEDSDQARYQLH 244 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 VAIADP ++I + S L +++ A + YL G IPMLP EL++ SL VRPVL+CR Sbjct: 245 VAIADPASFIDQHSPLAQSSHRSAQSLYLLGGTIPMLPEELANHCFSLAEGTVRPVLSCR 304 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE---AIAEQVRLLAQ 342 M ++ DG I + EF ATI S+ KL Y +V +L+ T D +++ IA ++ LA+ Sbjct: 305 MDINTDGEIT-HAEFARATIRSRRKLDYQRVGAFLDGTADTYTDNDPQPQIATMLKQLAE 363 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 + R +R H +V D+ +Y F + ++G++ + R A++IVEEAM+A N A + Sbjct: 364 LADLRRRYRETHQIVSSDQAEYAFEVNQQGKICAVHLRERTQAHKIVEEAMLATNYSAGQ 423 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPT 461 L K G G++ H GF + ALLK ++ +++++LDGF L +L + Q Sbjct: 424 FLA-KAGKGLFTTHTGFREDRLGEVKALLKEE--QIEHDDIMSLDGFVTLVNKLSNDQEK 480 Query: 462 GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 L +RR +E+S + H G+G+ YAT TSPIR++ D+ NH + + ++G Sbjct: 481 ATLLPALRRMMPTSELSLDAKGHLGIGMPHYATITSPIRRFTDLFNHWAILSELEGAKFR 540 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG-TDTRFAAEIVDISRGGMRVRL 580 +E +++E R+A+R++ WL ++ + G TD+ A+I +++ G RL Sbjct: 541 NANEEYLTKLSENLNNGRLADRELQQWLICQYAESLVGETDS---AKIRIVTQQGFGARL 597 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 G FI L + E + T+ + G+ VYK+ DV+ V + V M+ R I Sbjct: 598 ETQGIDGFI----LFDKKTEKSFDAKRMTLDVGGQ-VYKLEDVVKVKVDSVDMDKRRI 650 >UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7B5_HAHCH Length = 657 Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 211/657 (32%), Positives = 315/657 (47%), Gaps = 58/657 (8%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI-IAVIHS 66 L Q KQ L R EG VK + FGF +D + F+ P +M+KV GDRI + V Sbjct: 10 LKQFKQDLRIANNRFEGTVKGSPGRFGFAVLDDGRECFLNPDEMQKVFPGDRILVEVSQD 69 Query: 67 EKERESAEPEELVEPFLTRFVGK-------------VQGKNDRLAIVP---DHPLLKDAI 110 +K R+ A+ + + L FVG+ + G N + I P + D + Sbjct: 70 DKGRDVAKVVQHMRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPKKRQQAHVNDLV 129 Query: 111 PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL 170 CR L H F EG AE+ + I + LA++NL Sbjct: 130 LCRV---LQHPFPEGKPQ----------------AEVVKIIGKPGASGLEVNYMLAKYNL 170 Query: 171 EKEAPDGVATEMLDEGLV-----REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 + + L + + R+DL FVTID+AST+DMDDALFA A P+ +L+ Sbjct: 171 QAHNRASINEAELQKQVAAELEKRKDLRETPFVTIDAASTQDMDDALFATARPEGGWELL 230 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 AIADP+ I EG +DK A+ + Y +PMLP +L++ CSL++ E R L C Sbjct: 231 AAIADPSTLIPEGGDIDKYAQRLGSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCT 290 Query: 286 MTLSADGTIED-NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 M + ADG I +IE A I A L Y++V+ L +GD + A ++ L ++ Sbjct: 291 MQIDADGAISSYSIE--EAAIRCAANLTYEEVATALA-SGD--ASAHAYDATLQALNEVK 345 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 R HALV +DRPDY+ L E G+V +I + +A+ IVEEAM+AAN CAA L Sbjct: 346 AALASHRRAHALVNEDRPDYQLELDENGKVKNIHRKINSVAHSIVEEAMVAANRCAADFL 405 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF- 463 + +Y H GF P D + ++ D ++ T +GF K LDA P Sbjct: 406 KQNTERSLYTSHSGFRPERLDQIKQIVSEQISDYDCSDLHTWEGFKKFMDFLDANPPEVP 465 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 + + R + +S +P PHFG+GL Y T+TSPIRKY D+ HR +K+V+K + Sbjct: 466 VKAIANRLLARGALSDQPCPHFGMGLPHYTTFTSPIRKYVDLSIHRQIKSVLKNQKPHTL 525 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 + +Q+ E R R A + WL + + G F + + G + RL +N Sbjct: 526 NAKAILQLQESLRAGRSAVNESETWLKCEYAQTLIGKT--FDGVVQHTTGSGFQARLDEN 583 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGT-VQIKGE-TVYKVTDVIDVTIAEVRMETRSI 638 G + L A++++ + +GT Q GE +++ + VTI+ V ME + I Sbjct: 584 GIEGMVN---LGALQEKF---RFDGTYFQHTGEHRQFRLEQPVKVTISAVDMEKKLI 634 >UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis MED297 RepID=A4BI97_9GAMM Length = 647 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 215/650 (33%), Positives = 314/650 (48%), Gaps = 40/650 (6%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHG 57 M D L L LK + + EG VK T K FGF+ A S +F+PP +M +V G Sbjct: 11 MLDDKSLAVLQSLKSDIKAAKTLYEGTVKGTGKKFGFVVNAADGSEHFLPPDEMSRVFPG 70 Query: 58 DRI-IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD--AIPCRA 114 D + ++ + + AE EEL+ L F G + + P +P + Sbjct: 71 DEVRFTIVDQDDGKTKAELEELIRSPLDEFNGVFFVRGKAQGVEPFDSAFGGWLFVPPKQ 130 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 N++ D A++ RHP ++ AE+ + + D++ + V LA + + Sbjct: 131 TSHANNK----DLVRAKVVRHPWDTGKA-QAEVLKSLGSADNNRSWYSVALAEQGIPEAF 185 Query: 175 PDG-------VATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 D +A + R+DLT L FVTID+AST+DMDDALFA+ ++ QL VA Sbjct: 186 SDAELKQAKALAEAGPETDPSRQDLTDLPFVTIDAASTKDMDDALFARPT-ENGWQLSVA 244 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD +A+I S+LDKAA+ R T YLPG +PMLP L+D SL +E RP + +M Sbjct: 245 IADASAYIPLDSELDKAAQKRLTTTYLPGLTLPMLPEILADSAMSLVPDETRPAMIFQMQ 304 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 + DG + D E F AT+ S+AKL YD V+ W EN PES E ++ L Q Sbjct: 305 IDRDGNVSD-FEIFPATVRSQAKLAYDDVAHWFENNA--IPESH--QENLQALNDATQAL 359 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 WR +A KDR DYR + + +V DIV E + A +VEEAMI N +A+ L+D+ Sbjct: 360 ASWRRKNANPMKDRVDYRIRVDDHFQVTDIVQEHKNPARALVEEAMIVTNYQSAQWLQDQ 419 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKL---RRELDAQPTGFL 464 G++ H+GF P L LL+ + V L F K+ + +D L Sbjct: 420 P--GLFMCHLGFKPDRETELKGLLRDYTPDVAELNGHDLADFRKIMAASQTIDFPLYAVL 477 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 R R S E PHFGLGL Y TSPIRKY D+ HRL+KA + A Sbjct: 478 QKRFDR----GFWSREAQPHFGLGLSRYTNVTSPIRKYSDLCMHRLIKAKL-ASRALPDI 532 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 D + ER ++R A + + + L ++L + + + IV ++ + VRL D G Sbjct: 533 DHALSLLNERGNVSRFAAQKIENRLRYQWLSQQP--EQTYRGTIVHLNANNLMVRLDDCG 590 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 A+ + L +DE ++ + E Y++ + V IA V E Sbjct: 591 AVGQVD---LRKRKDEFSYDPLRMMLKFE-EFQYQLEQEVTVKIASVSAE 636 >UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n=3 Tax=Marinobacter RepID=A1U792_MARAV Length = 660 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 204/599 (34%), Positives = 298/599 (49%), Gaps = 30/599 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS- 66 L QLK + G VK+T FGF+ +D + F+PP +M+KV+ GDR+ H Sbjct: 10 LRQLKTDIKQNKVVFPGTVKSTNGRFGFVALDEGRDVFLPPEEMQKVLPGDRVNVTEHEV 69 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD--AIPCRAARGLNHEFKE 124 EK + +EL+E LT FVG+ K + P+ P + IP + +G + Sbjct: 70 EKGKTQGVVDELLESHLTTFVGRYLIKGKGHFVAPETPGINRWIFIPPKERKGAQPD--- 126 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE--- 181 D+ ++ RHP+K D A++ + I + + TLA +L P+ V T+ Sbjct: 127 -DFIYCQIHRHPIK-DGKGQAKVLRVIGKAGEPGIERAFTLANFDLADAWPEEVQTQADA 184 Query: 182 MLDEGLV-----REDLTALDFVTIDSASTEDMDDALFAKALPD-DKLQLIVAIADPTAWI 235 + +E + RED T +VTIDS T+DMDDAL A P+ L +AIADPTA I Sbjct: 185 LTEESITSHREGREDRTEQPYVTIDSPGTQDMDDALMAT--PNATGWTLSIAIADPTAMI 242 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 GS ++ A RA Y PG +PMLP +S LCSL R L C + ++ DG++ Sbjct: 243 EPGSPAEEEAFNRATAIYFPGEPLPMLPDAISTRLCSLMPEVPRLALVCDLQVNNDGSLG 302 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES--EAIAEQVRLLAQICQRRGEWRHN 353 D F A I S+ KL Y+ VS +E D + ++ EA+A + L Q +WR Sbjct: 303 D-YSFHQAVIRSQGKLSYELVSHLIEGREDDEIKALPEAVANSLDQLHQAATALRKWRSE 361 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 HAL+ DRP++R L E + I + A+R+VEE M+AAN CAA L +K G G++ Sbjct: 362 HALLSNDRPEFRLRLDENKRIRVIEPAVQNEAHRLVEECMVAANRCAADFL-EKQGQGLF 420 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQ 472 H G AD + LL+ + H+ + + +GF L + D Q + S + R Sbjct: 421 IQHPGLRDDRADNIRKLLEGYAPHLAELDATSAEGFKALMKHTDGLQADVPVKSILSRQL 480 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE--TATRPQDEITVQ 530 + AE+ EP PH G+GL AY T+TSP+RK+ D HRL+KA + + A PQ ++Q Sbjct: 481 ARAELGFEPAPHQGMGLAAYTTFTSPLRKFSDFYVHRLIKAALWDQPIKALNPQQLESLQ 540 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R RMA + WL + + K I G VRL NG F+ Sbjct: 541 TTQFR--ARMAANTLEAWLKSDYAKGLPADP--MEGTITRTMPSGFFVRLDCNGLEGFV 595 >UniRef50_A0Z0P5 Exoribonuclease R n=6 Tax=Bacteria RepID=A0Z0P5_9GAMM Length = 688 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 196/613 (31%), Positives = 292/613 (47%), Gaps = 49/613 (7%) Query: 4 DNPLLAQLK---QQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 +N +AQLK Q++ ++ AE VK T+ +GF V + FIPP +M KV+ GD++ Sbjct: 26 NNDAMAQLKGLKQKIEAEKEYAEATVKGTQNRYGFAVVGDGREIFIPPDEMLKVLPGDQV 85 Query: 61 IAVIH-----------SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD- 108 I S+ R A+ E L+E L RFVG + K + + PD LK Sbjct: 86 RICIRPATQKGKGGKKSQDGRTVADIERLIESTLDRFVGTIVVKGKAVFVEPDLHDLKRW 145 Query: 109 -AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFG----DDHFVPWWV 163 IP A G K GD + RHP K + L+ + + G ++ + Sbjct: 146 LFIPPHARNGA----KPGDKVDCALMRHPFKDGKPSAKVLSVFGSPGTPGLENRYCAARA 201 Query: 164 TLARHNLEKEAPDGVATEMLDEGLV---REDLTALDFVTIDSASTEDMDDALFAKALPDD 220 L +KE+ + E L R DL+ L+FV+ID+A T+D+DDAL+A+ + Sbjct: 202 GLTWAWSDKESATWIKFAEEREPLSDPERVDLSHLNFVSIDAARTQDIDDALYAEVTSEG 261 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 + L VA+ADPTA++ LD+ A + Y G +PMLP + D C+L E RP Sbjct: 262 WV-LYVAVADPTAYLDGMEGLDETLTSIATSTYFHGDVLPMLPEAIGRDFCALSEGEARP 320 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD----WQPESEAIAEQ 336 L C++ +S G + + EF A I+SKAKL Y V ++ D W EA+ + Sbjct: 321 SLVCKINVSDAGQV-GSYEFIQAKIQSKAKLTYAAVDRYVTGHNDQLIAWSNPLEALVQA 379 Query: 337 VRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAA 396 R L R +H LV +DR +YR+ L ++ ++ I + + +VEE MIAA Sbjct: 380 YRALRS-------HRESHELVMEDRTEYRWQLNDERQIGTIETAEKLASQHLVEECMIAA 432 Query: 397 NICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL 456 N AA L G + VH GF A LK + + T+ G+ ++ L Sbjct: 433 NRSAAHFLAMSEATGPFVVHPGFRKDRASETQEFLKRYLPDLTDTTTHTVAGYQQIFAAL 492 Query: 457 DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516 +A T L + R + A ST P H G+ L AY +TSP+RKY D + HR +K V+ Sbjct: 493 NAPHTLPLRGMVNRLLTRAVFSTSPAEHMGMALNAYTNFTSPLRKYVDFLTHRQIKRVLS 552 Query: 517 ---GETATRPQDEITVQ-MAERRRLNRMAERDVGDWLYARFL-KDKAGTDTRFAAEIVDI 571 G+ T Q + T +A R + AER WL +L + K+ +TR+ EI + Sbjct: 553 KKPGDAVTDLQLQSTASAIARGRGATQAAER----WLTGNYLDRCKSSGETRYTGEIAHV 608 Query: 572 SRGGMRVRLVDNG 584 + G VRL G Sbjct: 609 TSAGFTVRLAGLG 621 >UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B2SQ32_XANOP Length = 842 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 197/650 (30%), Positives = 311/650 (47%), Gaps = 47/650 (7%) Query: 18 QTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIAVIHS--EKERESAE 74 QT GVV A +GFGFL+ D F+PP +M+KVMHGDR +A + + R Sbjct: 182 QTSLIAGVVIANPEGFGFLKPDGGGDDLFLPPFEMRKVMHGDRALANVTGIDRRGRREGA 241 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRR 134 ++E ++R +G+ ++ + PD ++ + A G+ E +EG V E+ Sbjct: 242 IARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQI-APDGIG-EAREGQLVVCELIA 299 Query: 135 HPLKGDRSFYAELTQYITFGDDHFVPWWVT---LARHNLEKEAPDGVATEMLDEGLV--- 188 P + + + I D P V + H L E P V E LV Sbjct: 300 PP----DARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVLDEAAAVPLVVEP 355 Query: 189 -----REDLTALDFVTIDSASTEDMDDALFAKALPD-DKLQLIVAIADPTAWIAEGSKLD 242 R DL + VTID +D DDA++ + P+ D +L+VAIAD + ++ G+ LD Sbjct: 356 QMIGGRVDLRQMPLVTIDGEDAKDFDDAVYCE--PNADGFRLVVAIADVSNYVRPGTPLD 413 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A+ RA + Y PGF +PMLP LS+ +CSL R C M + DG + + F+ Sbjct: 414 DEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGGDGEVTGS-RFYE 472 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEA----IAEQVRLLAQICQRRGEWRHNHALVF 358 A + S A+L Y+QV W + G+ +++A + QV+ L Q+ Q + R + + Sbjct: 473 AVMNSHARLTYNQV--W-KAVGEGDADTKAFIGPLLPQVQRLHQLYQVLSKARTHRGAIE 529 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 + + RF+L GEV R A++++EE MIAAN+ AAR L Y VH Sbjct: 530 FETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSMHVPAPYRVHER 589 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEI 477 + + L LK L + A + + KL +++ A+P L+S + R QS A Sbjct: 590 PPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLRSQSLAVY 649 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------ATRPQDEITVQM 531 S E HFGL LEAYA +TSPIR+Y D++ HR LK + G + R +++Q Sbjct: 650 SPENNGHFGLALEAYAHFTSPIRRYPDLLVHRALKHALTGASPEKFIYTPRQMAALSLQC 709 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD---NGAIAF 588 +ER R AER+V + A +++ G +F I ++ G+ V L NG + Sbjct: 710 SERGRRADEAEREVDERYRAAWMEKHVG--GQFDGVISGVTGFGLFVELTQSKVNGLVHV 767 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 P + D + ++ + + +G +++ D + V + + ME R I Sbjct: 768 TQLPQDYYQFDPI---RKTLSGERRGRE-FRLGDPVRVLVLKASMEERKI 813 >UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K401_AZOSB Length = 993 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 171/559 (30%), Positives = 267/559 (47%), Gaps = 34/559 (6%) Query: 24 GVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELVE 80 G V+ GFGFL D Q F+ P +M++V+HGDR I I + R E + E++E Sbjct: 75 GRVEGHPDGFGFLVRDDGQPDIFLGPKEMREVLHGDRAIVRIAGQDRRGRPEGKVVEILE 134 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGD 140 +R VG+V ++ + +VP++ L I + + G E+ P K Sbjct: 135 RANSRVVGRVLNEHGVMIVVPENRRLAQDILVAPG---GKKVQPGQVVTVELIEQPTKYA 191 Query: 141 RSFYAELTQYITFGDDHFVPWWVTLARHNL--EKEAPDGVATEMLDEGLV------REDL 192 + +T+ + D + + L +H+L E + T L + RED+ Sbjct: 192 QPI-GRVTEVLGNYADPGMEIEIALRKHDLPFEFSSEAKADTRKLPTAVRKKDWAGREDI 250 Query: 193 TALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTN 252 TAL VTID + +D DDA++ + +L+VAIAD + ++ GS LD+ A R + Sbjct: 251 TALPLVTIDGETAKDFDDAVYCERQ-GRGFRLVVAIADVSHYVEAGSALDRDAYERGNSV 309 Query: 253 YLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLV 312 Y P IPMLP +LS+ LCSL R + M +S G I+ F+ A + S A+L Sbjct: 310 YFPRRVIPMLPEKLSNGLCSLNPQVERLCMVADMGISMTGEIK-AYRFYPAVMFSHARLT 368 Query: 313 YDQV--------SDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 Y +V + L+ G P E + + R+L + +RG A+ F+ + Sbjct: 369 YTKVAAALYDNDATALDEIGGLLPHLENLDKLFRVLLKARAKRG------AIDFETT-ET 421 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 R I + G++ IV E R A+R++EE M+AAN+CA+ L +Y VH G P Sbjct: 422 RMIFDDNGKIERIVPETRNDAHRLIEECMLAANVCASDFLHKNDHPALYRVHEGPTPEKL 481 Query: 425 DALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGP 483 + L L GL + + + L ++ +P L + + R A S + Sbjct: 482 EKLRTFLSEFGLPLGGGDEPRAKDYAALLDKVKDRPDAQLLQTVMLRSLRQAVYSPDNVG 541 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-TATRPQDEITVQMAERRRLNRMAE 542 HFGL EAY +TSPIR+Y D++ HR +KAV+ GE A D+I + + R A Sbjct: 542 HFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLAGEHYAAGDWDDIGLHCSTTERRADEAT 601 Query: 543 RDVGDWLYARFLKDKAGTD 561 RDV WL +++DK G + Sbjct: 602 RDVVAWLKCYYMQDKVGEE 620 >UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1V4B6_BURMS Length = 896 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 190/697 (27%), Positives = 304/697 (43%), Gaps = 101/697 (14%) Query: 14 QLHSQTPRAEGVVKATEKGFGF-LEVDAQKSYFIPPPQMKKVMHGDRIIAVI--HSEKER 70 QL + G V+ G+GF + D Q F+P +M+KVMH DR++A I + + R Sbjct: 150 QLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLARIVGYDRRGR 209 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVP-DHPLLKDAIPCRAARGLNHEFKEGDWAV 129 E+ E R +G++ +N L + P D + D + + A+ + K G V Sbjct: 210 PEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILVTQNAK----KAKVGQVVV 265 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-----------APDGV 178 E+ P + + + + + DD + + + ++ + E PD V Sbjct: 266 VELTDFPSRHSQPL-GRVCEVLGDIDDPGMEIEIAVRKYGVPHEFGAQALGEAAALPDKV 324 Query: 179 ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP---DDKLQLIVAIADPTAWI 235 L R DL + VTID D DDA++ + + +LIVAIAD + ++ Sbjct: 325 RPADLR---YRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRLIVAIADVSHYV 381 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 GS LD A R+ + Y P IPMLP +LS+ LCSL R VLAC M ++A G I+ Sbjct: 382 QPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGDIK 441 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW----- 350 +F+ A I S A+L Y +V+ L NT PE+ A + L+ + G + Sbjct: 442 -AYQFYPAVIHSAARLTYTEVAAVLSNTKG--PEA---ARRAELMPHLQHLYGVYKALFV 495 Query: 351 -RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 R + D + + +G++ I+ R A+R++EE M+AAN+CAA L+ Sbjct: 496 ARQKRGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKH 555 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRI 468 G+Y VH G P + L A L+ GL + + + L + +P L + Sbjct: 556 PGLYRVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPML 615 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE---------- 518 R A S + HFGL +AYA +TSPIR+Y D++ HR + A++ G+ Sbjct: 616 LRSMQQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKSPEGV 675 Query: 519 ---TATRPQ----------------------DEITVQMAERRRLNRMAERDVGDWLYARF 553 TA P+ +E+ + + R A RDV WL F Sbjct: 676 ELNTALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEAWLKCYF 735 Query: 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT---- 609 ++DK G + GGM + G + A F+ LV E G Sbjct: 736 MRDKLGEEY-----------GGMVNGVTSFGIFVQLDALFIEG----LVHVTELGADYFQ 780 Query: 610 -----VQIKGETV---YKVTDVIDVTIAEVRMETRSI 638 +++GE Y+++D + V ++ V ++ R I Sbjct: 781 YDEVKNELRGERTGIRYRLSDRVRVQVSRVDLDARKI 817 >UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVE2_DICNV Length = 752 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 186/650 (28%), Positives = 308/650 (47%), Gaps = 59/650 (9%) Query: 24 GVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVI-HSEKE-RESAEPEELVE 80 G V A +G+GFL V+ FIPP M+++MHGD+I+A I H + + R+ P E+++ Sbjct: 96 GYVIAHPEGYGFLNVEGDIDDGFIPPQYMRELMHGDKILARIKHVDGQGRKDYVPVEILQ 155 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC-RAARGLNHEFKEGDWAVAEMRRHPLKG 139 R VGK+ +++P++ L I +AA G + +AE+ +P K Sbjct: 156 RGQKRVVGKLLNNQGIFSVIPENRRLTQPIMIPKAALG---DAVANQIVLAEITAYPSKH 212 Query: 140 DRSFYAELTQYITFGDDHFVPWWVTLA--RHNLEKEAPDGVATEM------LDEG--LVR 189 ++ T GD+ V +A +N+ D V ++ L E + R Sbjct: 213 QQAIG---TIVKVLGDEMAAGLEVAIAIENYNIPNHFSDAVRAQIEKMPDALQEADYVDR 269 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 DL L VTID S D DDAL+A+ ++ +L VAIAD + ++ S LD+ A R Sbjct: 270 LDLRYLPMVTIDGISARDFDDALYAEKRGEN-YRLFVAIADVSYYVKPDSPLDEEAYARG 328 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 + Y P +PMLP +LS+ LCSL + R L C +T++ G I+ N +F A I+S A Sbjct: 329 TSVYFPDRVVPMLPEKLSNGLCSLNPHVDRLCLVCELTITPSGQIK-NSKFHQAVIQSHA 387 Query: 310 KLVYDQVSDWLENTGDWQPES----EAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 +L Y+ V L ES A E +R++ QI + E R FK+ Sbjct: 388 RLTYETVEKILFLQDPLMQESFAQLRAPLEDLRVVYQILRTAREKRQAIRFDFKEA---E 444 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 F+ +G++ I A + +++EE M+ AN+ AA+ L+ G+Y VH + Sbjct: 445 FLFDSEGKIESIQARNELESYQLIEECMVIANVAAAKFLQKHKLIGLYRVHDKPSAERFE 504 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPGPH 484 + G + + +T++ F L ++ + Q L+ I R A S+E H Sbjct: 505 KVFNYFAKLGFKTPSFDTVTVEHFAHLLKKAEGRQDRALLEKMILRSLPQALYSSENRGH 564 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------ATRPQDEIT--VQMAERRR 536 F L L YA +TSPIR+Y D++ HR ++ ++ E+ + DE+ M ERR Sbjct: 565 FALALSHYAHFTSPIRRYPDLLVHRAIRHCLQEESSEVSLYSLEKMDEMAKHCSMTERRA 624 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL----VDNGA-IAFIPA 591 + A RD D+L F+ + G + F EI ++ G+ + L +D ++ +P+ Sbjct: 625 DD--ASRDAMDFLKCEFMSHRIGDE--FFGEISSVTSFGLFITLDEFFIDGLVHVSTLPS 680 Query: 592 PFLHAVRDELVCSQENGTVQIKGET---VYKVTDVIDVTIAEVRMETRSI 638 + H D V++ GE Y++ D + + + +V +E + I Sbjct: 681 DYYHYDAD---------NVRLLGERSGHSYQLMDKVRIRVVQVNIEDKKI 721 >UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE Length = 705 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 165/583 (28%), Positives = 268/583 (45%), Gaps = 38/583 (6%) Query: 24 GVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFL 83 G V A GFGFLEV+ K +IPP +M KV HGD + A + K ++ ++++ Sbjct: 70 GTVIAYPGGFGFLEVEGGKDIYIPPFEMVKVFHGDVVKAKVTEFKGKKEVRIIKVLKRAK 129 Query: 84 TRFVGKVQGKNDRLAIVP-----DHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 V KV ++++ +VP H +L C+ + KEG+ V ++ + P K Sbjct: 130 KDIVAKVVFEDEQCYVVPLDENAHHRILLSKKDCQ-------KLKEGEVVVLKITQFPTK 182 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV--------RE 190 + ++ + + + F+ V + ++NL P+ V E+ R Sbjct: 183 KSPA-RGKVIEVLGNPKEKFIAIDVIIRKYNLPTSYPEKVIKEVEAIPEEIPEEEIKRRR 241 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL TID D DDA+ + P+ +L V IAD + ++ EG++ DK A R F Sbjct: 242 DLREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKRGF 301 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 T Y P + MLP +LS LCSLR NE + M G ++ + + + I SKA+ Sbjct: 302 TYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLK-AYDIYESVIRSKAR 360 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 L Y++ + + + + E +R++ + + R + D P+ I+ E Sbjct: 361 LTYNEALALIVGDPALEKKFPNLVEPLRMMETLYRILSRKRWEMGSIDFDLPEAEVIVDE 420 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 GE I R +A+RI+E MI+AN A L +Y VH D + L + Sbjct: 421 YGEPTAIYPYERHVAHRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEKVENLLEI 480 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSF-----AEISTEPGPHF 485 L+ G V T F K+ + + +P + + RF + A+ S HF Sbjct: 481 LEGLGYKVKRPHEYTPKFFQKIIEDFEGRP----EENLVRFLTLRAMARAKYSPHNVGHF 536 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-----DEITVQMAERRRLNRM 540 GL LE YA +TSPIR+Y D+I HRLLK ++GE + +E ++++ R+ Sbjct: 537 GLALEHYAHFTSPIRRYPDIIVHRLLKKALRGEEIDYEKTLAYLEEAGNHLSKQERIADE 596 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 AE + D+L AR++K + G + F I + G V L +N Sbjct: 597 AEMEAIDYLKARYMKGRIGEE--FIGIITGVVAFGFFVELEEN 637 >UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9X2_9GAMM Length = 831 Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 205/652 (31%), Positives = 307/652 (47%), Gaps = 62/652 (9%) Query: 24 GVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHS--EKERESAEPEELVE 80 G V A ++G+GF + + FIPP M ++MHGD+I+A + E+ R+ P E++E Sbjct: 99 GFVVAHQEGYGFFSPENGEPDGFIPPKYMAELMHGDKILARVKDTDERGRKDYAPVEILE 158 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKD--AIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 R VGK+ + +++PD+ L IP A G K G + E+ +P + Sbjct: 159 RAQKRIVGKLAVQQGVWSLLPDNRRLTHHLIIPADALGG----GKAGQVVIGEITAYPSR 214 Query: 139 GDR---SFYAELTQYITFG-------DDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV 188 + A L + + G ++H +P A ++ PD + + EG Sbjct: 215 FQQPIGKVVAVLGEAMAAGMEVDIAIENHNIPAVFPEAVREQCEKIPDALRDQDY-EG-- 271 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L FVTID S D DDA++A+ ++ +L VAIAD ++ S LD A R Sbjct: 272 RLDLRHLPFVTIDGISARDFDDAVYAEKRGEN-YRLYVAIADVAHYVRPDSPLDIEAYNR 330 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + Y P IPMLP +LS+ LCSL N R + C +TL+ DG+I+ + F A I S Sbjct: 331 GTSVYFPDRVIPMLPEKLSNGLCSLNPNVDRLAMVCEITLAPDGSIKRS-AFHDAVIHSH 389 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR--- 365 A+L Y+ V + L D Q E+ A R L + G R A + + D+ Sbjct: 390 ARLTYETVEEIL--FLDNQMVRESFAALQRPLDNLKTVYGILR--AARLARSVIDFHASE 445 Query: 366 --FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-RDKLGFGIYNVHMGFDPA 422 FI +G++ I A R ++R++EE MIAANICAA+ + R KL +Y VH D Sbjct: 446 PEFIYDSEGKIETIQARARLESHRLIEECMIAANICAAKYIGRHKLP-ALYRVH---DHP 501 Query: 423 NADALAALLKTHGLH----VDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEI 477 +A+ L L+ G A + T F L + +P ++ + R S A Sbjct: 502 SAERLGKLIDFLGKRGIKWQGALDNATPAQFSALLAQCADRPDFAQIEIMVLRSMSQAIY 561 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET--ATRPQDEITVQ----- 530 E HFGL LE YA +TSPIR+Y D++ HR ++ ++G T R E V+ Sbjct: 562 IPENRGHFGLALEHYAHFTSPIRRYPDLLVHRAIRHQLQGGTRDNYRYSAESMVEKGKHC 621 Query: 531 -MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 M ERR A RD D+L F+ + G F I +I+ G V L D + Sbjct: 622 SMTERR--ADEATRDAMDFLKCEFMSHRIGET--FTGRIANITNFGFFVTLDDIYIDGLV 677 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGE---TVYKVTDVIDVTIAEVRMETRSI 638 L D S E T + GE T + + D +++ +A+V +E R I Sbjct: 678 HVSAL--TNDYYHYSAE--TFTLNGERSGTRFALMDAVEIQVAKVDIEERKI 725 >UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWH9_9PROT Length = 707 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 177/564 (31%), Positives = 268/564 (47%), Gaps = 44/564 (7%) Query: 24 GVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPF 82 G V A GFGF++V+ +K +F+P +M +MHGD + ++ RESAE +VE Sbjct: 76 GKVSAHPDGFGFVDVEGREKGFFLPHEEMNGLMHGDIVEVRPVRKRGRESAEVVRIVEHA 135 Query: 83 LTRFVGK--VQGKNDRLAIV-PDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKG 139 T VG+ VQGK +A+V P + AI A G +GDW E++R Sbjct: 136 STVLVGQYLVQGK---IAVVQPRSRNMPQAILI--AHGDAGTASDGDWVRIEIKR----- 185 Query: 140 DRSFYAELTQYITFGDDHFVPWWVTL--ARHNLEKEAPDGV-------ATEMLDEGLV-R 189 D Q + GD+ + L A L+ + P V A ++L+ + R Sbjct: 186 DAGHVRGKVQEV-LGDNLSPSRLIDLIVAEQQLDVDFPPAVIAEANAFADQVLESDIKGR 244 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALP-DDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 +DL + FVTID D DDA+ LP + + V+IAD + ++ S LDK A R Sbjct: 245 KDLRHIPFVTIDGEDARDFDDAVCV--LPRGEGFEAWVSIADVSHYVRPHSALDKEALAR 302 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + + Y P IPMLP +LS+ LCSL + R + RM A+GT +I + + I S+ Sbjct: 303 SNSFYFPDRVIPMLPEKLSNGLCSLNPHLPRLGMTVRMRFDANGT-RRSIHVYESVIHSQ 361 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A+L Y Q S WLE + E + E + A++ ++ + R + D P+ R +L Sbjct: 362 ARLTYTQASAWLEERDETAVEKPELREMLDDAARLFRKLEKKRKQRGALDLDMPEVRALL 421 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 + V+DIVA R IA R++EE M+AAN A + +Y +H + + L Sbjct: 422 -QDDVVVDIVASERNIAQRLIEEMMLAANTAVAEYMDAHECALLYRIHPAPERQAIETLN 480 Query: 429 ALLKTHGLHVDAEEVLTLDGFCK------LRRELDAQPTGFLDSRI--RRFQSFAEISTE 480 L GL V ++ D + + + + +P + R+ R Q Sbjct: 481 EFLAPFGLFVKLPKIKEKDSQVRPGDVQLVLEQSEGKPFAHVLHRLVLRSMQQAKYTPVN 540 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-----EITVQMAERR 535 G HFGL ++YA +TSPIR+Y D+I HR LKA+I+GE R Q +I +Q + + Sbjct: 541 VG-HFGLAYDSYAHFTSPIRRYADLIVHRRLKALIRGEDPNRVQPVGTLADIGLQTSTQE 599 Query: 536 RLNRMAERDVGDWLYARFLKDKAG 559 R + E D L A F G Sbjct: 600 RKQQRGEWDTQAMLAALFHSKDVG 623 >UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group II RepID=A3EPY9_9BACT Length = 744 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 179/656 (27%), Positives = 292/656 (44%), Gaps = 55/656 (8%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIAVIHSE 67 A L +LH + EG+ + G+GF+ + ++ ++PP K MH D++++V Sbjct: 69 AGLPDKLHFR----EGMFLSHPDGYGFVVTEGEREDLYVPPGATKGAMHQDKVLSVHLGT 124 Query: 68 KERESAEPE--ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF--- 122 R +E + E++ + VG + + P P IP HEF Sbjct: 125 DHRGRSEGQVVEIISRSRSSVVGVLHELKGGYFLSPRDP----KIP--------HEFLVV 172 Query: 123 -------KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 +EG+ AV ++ R+P G ++++++ D V + +A H+L P Sbjct: 173 DNGAEKLQEGELAVLDILRYPEPGHIP-EGKISRFLGDPSDPSVDTDLVIATHHLSISFP 231 Query: 176 DGVATE---MLDEGLV-----REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 D V E M E V R DL L+ +TID D DDAL PD Q+ + Sbjct: 232 DRVEAEAKRMAKEVAVEPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIH 291 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD A++ GS+LDK A R + Y P +PM P LS+ + SL +E R + Sbjct: 292 IADVGAYVLPGSELDKEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVR 351 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 +S G + ++ F + I S+ + Y +V L PES+ + Q+R L ++ + Sbjct: 352 MSPAGQVLES-SIFRSVIRSRLRATYSRVHPILAGESTDSPESK-FSVQLRSLWKLAKNL 409 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 E R + + D P+ +L +GE +DI+ PR +++ +VEE M+ AN A L K Sbjct: 410 REERFQNGSLDFDLPEPEIVLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRK 469 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVD--AEEVLTLDGFCKLRRELDAQP-TGFL 464 +Y VH P ++L L G+ + E + + P + Sbjct: 470 FSMAMYRVHETPSPEKTESLGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMV 529 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL---KAVIKGETAT 521 + R A P HFGL ++ Y +TSPIR+Y D+I HRLL + GE + Sbjct: 530 HFSVLRSLKQARYDVYPLGHFGLAMDDYTHFTSPIRRYPDLIVHRLLDLPEGRPSGEGSF 589 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 P +++ VQ +ER R + AER D RF+ G +F+ + ++ G V L Sbjct: 590 YPLEQVAVQASERERASVEAERMAVDLKKIRFMGQHIG--KKFSGSVSGVTGFGFFVELS 647 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET---VYKVTDVIDVTIAEVRME 634 D +P A+ D+ E + ++GET Y++ D ++V + V E Sbjct: 648 DVLVEGLVP---FSALNDDYYVYDEKHHL-LRGETTRKTYRIGDRLEVVVVRVDNE 699 >UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13 RepID=B6BU65_9PROT Length = 723 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 160/572 (27%), Positives = 272/572 (47%), Gaps = 25/572 (4%) Query: 24 GVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELV 79 G V+ G+GFL D F+ +M KV H DR++ I + AE E++ Sbjct: 97 GKVQGHPDGYGFLIPDELEHDDIFLNQKEMGKVFHNDRVMVQISGLDRKGKAEGTIVEVL 156 Query: 80 EPFLTRFVGKV-QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 E F T VG+V Q + D + +D I G + + GD E+ P Sbjct: 157 ERFNTVLVGRVVQSYGVTIVAAEDKRIHQDII---IPYGKDMDAVPGDIVEVEITTQPAM 213 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-----LDEGLVREDLT 193 + ++ + I DD + + L +HNL + E+ + +G +++ + Sbjct: 214 NIKPM-GQIIEVIGKLDDSGIEIEIALRKHNLPFRFDKKIDKELEKISDISDGDLKDRID 272 Query: 194 ALD--FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 D F+TID + +D DDA++A+ + +L+V IAD + ++ EGS LDK A R + Sbjct: 273 LRDNFFITIDGETAKDFDDAVYAEN-HKEFFKLLVGIADVSHYVKEGSALDKEAFDRGNS 331 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 Y P IPMLP +LS+ LCSL + R V+ M ++ G ++ + EF+ A I SK +L Sbjct: 332 VYFPRRVIPMLPEKLSNKLCSLNPHVDRLVMIADMVITKKGEVQ-SYEFYPAVINSKHRL 390 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN-HALVFKDRPDYRFILGE 370 Y V + + + + + + + L + + E R+ HA+ F DR + + + E Sbjct: 391 TYTLVDQLIFQKQNQKEHPKELIQHLNTLKSVYEVLSEARNKRHAIEF-DRIESQILFDE 449 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 G++ DIV R A+R++EE M+AAN+ AA L K G++ H + L ++ Sbjct: 450 GGKIKDIVPLTRNEAHRLIEECMLAANVSAADYLLSK-KIGLFRNHEKPKDEKLEILKSV 508 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGL 489 L +H++ + + +L ++ + + L + I R A + HFGL Sbjct: 509 LSDFKVHMEGGLSPVVMDYVELINKIKNKENFQMLQTMILRSMQQANYGSVNKGHFGLAY 568 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVI-KGETATRPQDEITVQMAERRRLNRMAERDVGDW 548 + Y +TSPIR+Y D++ HRL+K+ + K T + I + R A RDV +W Sbjct: 569 DKYTHFTSPIRRYPDLVVHRLIKSFLNKKRLKTDNLESIGNHCSSTERRADEATRDVENW 628 Query: 549 LYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 L ++KD+ G +F I ++ G+ V + Sbjct: 629 LKCFYMKDRIG--EKFDVVISSVTNFGIFVEI 658 >UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP83_CLOCL Length = 785 Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 179/652 (27%), Positives = 295/652 (45%), Gaps = 58/652 (8%) Query: 24 GVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPE--EL 78 G ++ KGFGF+ D + K FIP QM +HGDR++A + EK + E E + Sbjct: 70 GKLQGHSKGFGFVIPDEEGVKDVFIPSSQMGGAIHGDRVVAKITFGEKNGKKCEGEIIRI 129 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 +E +G + + ++P+ + + + K G + E+ +P Sbjct: 130 LERNTKEVIGTYEDSRNFGFVIPEDKRI--SFDIFVPKNFRSGAKTGQVVICEILEYPDD 187 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV--ATEMLDEGL------VRE 190 R+ ++ + D + + +H L +E P V A E +DE + R Sbjct: 188 SRRNPEGKIKNILGNKGDKGIDILTIIKKHGLPEEFPAKVLDAAESIDEEIPDKEIARRR 247 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL + VTID +D+DDA+ L + L V IAD T ++ E SKLD A +R Sbjct: 248 DLRDMMMVTIDGEDAKDLDDAVSLSKLDNGNYYLGVHIADVTHYVKESSKLDNEAFLRGT 307 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + YL IPMLPR+LS+ +CSL R L C M ++ G +E N E + I++ A+ Sbjct: 308 STYLIDRVIPMLPRKLSNGVCSLNPKVDRLTLTCFMEINDKGKVE-NHEIVESIIKTNAR 366 Query: 311 LVYDQVS--------DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + Y V+ + +E + P +A+ E +L ++RG A+ F D Sbjct: 367 MTYTNVTKILRDKDQELIEEYKELVPMFQAMEELQHILEAKRKKRG------AVDF-DFQ 419 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYNVHMGFDP 421 + + IL E G+ +DI R IAN+I+EE M+A N A + K+ F +Y +H + Sbjct: 420 ECKIILNEMGKPVDIKPYERAIANKIIEEFMLACNETIAEHMFWSKMPF-VYRIHEEPNE 478 Query: 422 ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-----FLDSRIRRFQSFAE 476 + + G V T + K +E+ Q G +++ + R A Sbjct: 479 EKLEHFNEFARNLGYVVKK----TKEVHPKHLQEIVEQVKGKKEETVINTLLLRSMMQAR 534 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV------- 529 S E HFGL + Y +TSPIR+Y D+ HR++K+ I G+ + ++TV Sbjct: 535 YSPESLGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKSFINGKIDEKYMKKLTVTVEKASL 594 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 Q +ER R + AER+V D A ++ D+ G + I ++ GM V L +N I Sbjct: 595 QSSERERAAQDAEREVDDLKKAEYMSDRIG--EVYEGIISSVTNFGMFVEL-ENTVEGLI 651 Query: 590 PAPFL---HAVRDE---LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 L + V DE + + + G+++ + D +D+ E+ E Sbjct: 652 HISTLNDDYYVYDEDRLWLLGERTKNIYRLGDSIKIIVDKVDLAAHEIYFEV 703 >UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC4_9BACT Length = 682 Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 158/619 (25%), Positives = 289/619 (46%), Gaps = 33/619 (5%) Query: 32 GFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKV 90 G+GFL D + + FIP +M MHGD++ + + ++ E+VE + VG++ Sbjct: 71 GYGFLSHDGEGRDIFIPKNKMNGAMHGDKVTISPETFRGKQEGRVVEIVERSEQKIVGRI 130 Query: 91 QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQY 150 + + +VP + I + + ++K+ + E+ P +G + ++ + Sbjct: 131 ENLAGIMRVVPMTRKVNTYIYLTSNKV---QYKDDTVVLVELTHFPSEGSAA-RGQVNKV 186 Query: 151 ITFGDDHFVPWWVTLARHNLEKEAPDGV-------ATEMLDEGLVREDLTALDFVTIDSA 203 + D + + L R++++K P+ + + E++ R DL +L VTID Sbjct: 187 LGMLSDPRIEDEIVLNRYDIDKVYPESIEKYVEKTSPELMKNPGARTDLRSLPTVTIDGE 246 Query: 204 STEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLP 263 + +D DDA+ + +++ L V IAD ++ G+ +D A R + Y P F +PMLP Sbjct: 247 TAKDFDDAISIEKT-ENEFILYVHIADVCHFVQPGTPVDNEAYRRGTSFYFPEFAVPMLP 305 Query: 264 RELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENT 323 LS+ LCSLR NE R L ++T + DG F+ + I S +L Y+ V+D LE Sbjct: 306 ESLSNGLCSLRPNEDRLALTAKITYTKDGQ-RKKAYFYRSIINSDRRLTYNSVNDVLEK- 363 Query: 324 GDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRR 383 + + + +AI + ++ ++ + R ++ D P+ F L E GEV I+ R Sbjct: 364 -NTKEKDKAILDLLKDSKELAGKIMVRRAKAGMLDFDFPETTFELDENGEVTAIIPAERH 422 Query: 384 IANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV 443 +++RI+E MI AN + L +Y +H DP + A L T G+ V ++V Sbjct: 423 LSHRIIEHFMIEANEVVSEFLEKHTKKSVYRIHDKPDPMKLEDFAGLAATFGVDVTVKDV 482 Query: 444 LTLDGFCKLRREL-DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKY 502 D K+ + ++ L + R + AE +T HFGL ++Y +TSPIR+Y Sbjct: 483 TPKD-VKKINEAVNNSDYADILGGALVRTMAKAEYNTNNIGHFGLASDSYTHFTSPIRRY 541 Query: 503 GDMINHRLLKAVIKGET--ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT 560 D++ HRL+ + G + D+ E + AERD+ + ++L Sbjct: 542 PDLMVHRLICNTLFGTEYHSEAGLDDACKLSTENEQRAENAERDISKFKKLKYLAKHV-- 599 Query: 561 DTRFAAEIVDISRGGMRVRLVD---NGAIAF--IPAPFLHAVRDELVCSQENGTVQIKGE 615 D F A ++ + G+ + + G ++ IP ++ E + G V K Sbjct: 600 DEPFGAVVMSVGAFGLNIYIESVMLKGTVSLESIPGDVYQFMKKEQIV---RGRVTGK-- 654 Query: 616 TVYKVTDVIDVTIAEVRME 634 +++ D+I+V + + M+ Sbjct: 655 -MFRAADLIEVMVERIDMD 672 >UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=B5EJB3_ACIF5 Length = 746 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 180/659 (27%), Positives = 287/659 (43%), Gaps = 78/659 (11%) Query: 24 GVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELVE 80 G V A GFGFL + K F+ P +M+KV HGD I+ E R E ++E Sbjct: 96 GTVSAHPDGFGFLIPEGGGKDLFLSPREMRKVFHGDTILGRAVGEDRRGRIEGAIVRILE 155 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF---KEGDWAVAEMRRHPL 137 L + VG+ + +VP+ R + EF + G+ A P+ Sbjct: 156 RALKQVVGRYYAEGGVRYVVPED------------RRIPQEFAVVEGGELA-------PV 196 Query: 138 KGDRSFYAELTQY-----------ITFGDDHFVPWW---VTLARHNLEKEAPDGVATEM- 182 G + E+TQY + +H P + + + L + PD V E+ Sbjct: 197 HG-QIVTLEITQYPDGRNMPQGCVVEILGEHMAPGMEVEIAVRNYGLPHQWPDEVLAEIT 255 Query: 183 ---------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + EG R DL AL VTID A +D DDA++A+ + ++ +LIVAIAD Sbjct: 256 HFSETVPEAIKEG--RRDLRALPLVTIDGADAKDFDDAVYAEEI-ENGFRLIVAIADVAT 312 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ S LDK A R + Y P IPMLP LS+ LCSL + R + C M G Sbjct: 313 YVRPDSALDKEAATRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMLCEMETDLTGE 372 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 ++ F + S+ + YD+V+ L D + A+ + +L ++ + + R Sbjct: 373 VQ-RFRFARGVMRSQRRFTYDEVAAILAGDEDLRTRDAAMVPHLEVLHRLYESFAKARER 431 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 + D + R I E+ + IVA R +A+RI+EE M+AAN+CAA+ R +Y Sbjct: 432 RGTIEFDSQESRIIYNEQARIEKIVAVTRNVAHRIIEECMLAANVCAAQYFRIHELPMLY 491 Query: 414 NVHMGFDPANADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQ 472 VH + L L G+ V + D + + + + + I R Sbjct: 492 RVHPEPSGDKLEDLRRFLGELGVPVRLPTHPRSADLASIIEDTRERSDSSLIQTVILRSL 551 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR---PQDEIT- 528 S A + + G HFGL AY +TSPIR+Y D++ HR ++A++ A PQ + Sbjct: 552 SQAYYTVDTGMHFGLAFLAYTHFTSPIRRYPDLVVHRGIQALLDAAGAEPRWFPQKVLQE 611 Query: 529 ----VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 M ERR A R+ +WL F+ DK G + I ++ G+ V L + Sbjct: 612 LGQHCSMTERR--ADEASREAVNWLKCEFMMDKVGET--YTGIITGVTGFGLFVALREIY 667 Query: 585 A-----IAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 I+ + + H +Q + + + +++ D I + +A V ++ R I Sbjct: 668 VEGLIHISTLGEDYFH------FDAQHYRIIGDRTKETFQLGDEIQIRVANVNLDDRKI 720 >UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID=A4VQN3_PSEU5 Length = 833 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 179/613 (29%), Positives = 268/613 (43%), Gaps = 70/613 (11%) Query: 24 GVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVIHS--EKERESAEPEELVE 80 G V GFGFL D F+ P QM+ V GDR +A + + R E++ Sbjct: 91 GRVSGHRDGFGFLIPDDGSDDLFLSPAQMRLVFDGDRCLARVAGLDRRGRREGAIVEVIS 150 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKDAI---PCRAARGLNHEFKEGDWAVAEMRRHPL 137 VG+ ++D +VPD+P ++ + P RA +F E +R Sbjct: 151 RAHESIVGRYHIESDVGFVVPDNPKIQQEVLVTPGRALDAKPGQFVEVKITHWPTQRFQP 210 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--------DEGLVR 189 +GD + Y+ G + V L ++ P+ V E + R Sbjct: 211 QGD--IVEVIGNYMAPG----MEIDVALRSFDIPHVWPEAVLKEAARLKPEVEEKDKHKR 264 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKA-----LPDDKLQLIVAIADPTAWIAEGSKLDKA 244 DL L FVTID D DDA++ + L +L VAIAD + ++ S LDK Sbjct: 265 VDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTGGFRLYVAIADVSHYVKVDSALDKE 324 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A +R + Y P +PMLP ELS+ LCSL + R + C +TLS G + D +F+ A Sbjct: 325 AVVRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEITLSKSGKMTD-YQFYEAV 383 Query: 305 IESKAKLVYDQVSDWLENTGDWQPES----EAIAEQVRLLAQICQRRGEW------RHNH 354 I S A+L Y++VS LE QP+S AE +L + Q + RH Sbjct: 384 IHSHARLTYNKVSAMLE-----QPKSAEGKRLSAEYAEVLPHLKQLYSLYKVLLKARHTR 438 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 + + + R + G ++ I R A++++EE M+ AN+ A L+ +Y Sbjct: 439 GAIDFETQETRIVFGADRKIAAIKPTERNDAHKLIEECMLCANVATAAFLQKHEIPALYR 498 Query: 415 VHMGFDPANADALAALLKTHGLHV-DAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQ 472 VH + L A L GL + +E T + L ++ +P + + + R Sbjct: 499 VHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEKIQGRPDFHVIQTVMLRSL 558 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT----------- 521 S A S E HFGL EAYA +TSPIR+Y D++ HR +++VI+ T Sbjct: 559 SQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSVIRSRRDTPHVRREGAPSM 618 Query: 522 -----RPQDEITVQ-------MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIV 569 P DE ++ M ERR A RDV +WL F+KD+ G F I Sbjct: 619 PKARIYPYDEAALEQLGEQCSMTERR--ADEATRDVVNWLKCEFMKDRVGET--FPGVIT 674 Query: 570 DISRGGMRVRLVD 582 ++ G+ V L D Sbjct: 675 AVTGFGLFVELTD 687 >UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_ALCBS Length = 828 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 188/670 (28%), Positives = 292/670 (43%), Gaps = 74/670 (11%) Query: 24 GVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIA--VIHSEKERESAEPEELV 79 G V+ + GFGFL D Q F+ P QM+ VM GDR++ ++ ++ A E+ Sbjct: 101 GRVQGHKDGFGFLIPDDKTQGDLFLAPRQMENVMDGDRVLVSNAGYNRFGKKEARIVEIT 160 Query: 80 EPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKG 139 E T +G+ + I P++ + + G+ GD A + ++P + Sbjct: 161 ERVATEVIGRYSREAGISFIEPENRRITKEVLIEDKNGIKP--NPGDHVRATITQYPSR- 217 Query: 140 DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV--ATEMLDEGLVRE------D 191 D L + I D+ + V L R + P+GV A E + + E D Sbjct: 218 DHHVLVRLEEIIATPDEAGMEVEVALRRFEIPHVWPEGVEAAAEKFGDKVPHEPKAHRVD 277 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 L L VTID + D DDA++ + P +LIVAIAD + ++ GS+LD+ A R + Sbjct: 278 LRDLPLVTIDDETARDFDDAVYVERRPRGGWRLIVAIADVSHYVQPGSELDQEAAKRGNS 337 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 Y P IPMLP LS+ LCSL + R L C M +SA+G + I F + S+ +L Sbjct: 338 VYFPNRVIPMLPEALSNGLCSLNPHVDRLCLYCDMKISANGRLTRFI-FREGVMRSRHRL 396 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLL-----------AQICQRRGEWRHNHALVFKD 360 Y++V +E +PESE + V L ++ R + D Sbjct: 397 TYNKVGAIIE-----EPESELAQDTVASLDDESLDMIWSFHEMFLALRRRRAERGAIDFD 451 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 D R I E ++ IV R +A+ ++EEAM+AANIC+A++L +Y H Sbjct: 452 SDDTRIIYDENKKIEAIVPVQRNVAHIMIEEAMLAANICSAKLLEKAGVPALYRNHEPPK 511 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDG--FCKLRRELDAQP-TGFLDSRIRRFQSFAEI 477 L L GL + E F LR E+ +P + + + R S A+ Sbjct: 512 EERLSKLQQFLGGLGLSIAWSEGAAPKPYVFQDLREEILERPDRNVIQTMMLRTMSQAKY 571 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-----------GETATRPQDE 526 E HFGL +AY +TSPIR+Y D++ HR ++ +I+ G P+ + Sbjct: 572 EAENKGHFGLAYKAYTHFTSPIRRYPDLLVHRAIRFLIRSNGEPNHVDNPGNLPEIPRQK 631 Query: 527 I-------------TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 I M ERR A RDV WL +F++ G F I ++ Sbjct: 632 ILPYNQADMVAIGEQCSMTERR--ADEATRDVVSWLKCQFMEAHLG--QVFEGAISGVAS 687 Query: 574 GGMRVRLVD---NG--AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 G+ V+L D +G +A + + + H L + E+ Q + + D + V + Sbjct: 688 FGLFVQLSDLHIDGLVHVANLDSDYYHFDEVSLTLTGESTGRQ------FGLGDAVTVCV 741 Query: 629 AEVRMETRSI 638 A V E R I Sbjct: 742 AAVHTEDRKI 751 >UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXP1_HALNC Length = 803 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 182/649 (28%), Positives = 283/649 (43%), Gaps = 57/649 (8%) Query: 24 GVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELVE 80 G V GFGFL D F+ P M+ +++GDR + + R E E++E Sbjct: 92 GRVLGHRDGFGFLVPDDGGDDVFLSPRVMRALLNGDRAVVQVTGLDRRGRREGNLVEVIE 151 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKDAI--PCRAARGLNHEFKEGDWAVAEMRRHPLK 138 VG++ + +VPDH + I P G ++G + P Sbjct: 152 RANAEIVGRLVLEAGIAFVVPDHARITQDILVPMTDLMGA----RDGQIVRVALVEQPTL 207 Query: 139 GDRSFYAELTQYITFGDDHFVPWW---VTLARHNLEKEAP-------DGVATEMLDEGLV 188 + + + + DH P V + H + E P DG+ E+ + Sbjct: 208 ----RHKPVGKVVEVLGDHMSPGMEIDVAINSHGIPHEWPEEVLAAIDGLNPEVEESHKS 263 Query: 189 -REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL ++ VTID A ++D DDA+F +A P+ +L+VAIAD + ++ GS LD+ Sbjct: 264 GRVDLRSMPLVTIDGADSKDFDDAVFCQAAPE-GFRLLVAIADVSHYVNVGSALDREGFN 322 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 RA + Y PG +PMLP LS+ LCSL R L M ++ +G I FF ++S Sbjct: 323 RATSVYFPGRVLPMLPEVLSNGLCSLNPAVDRLCLCADMLINNEGHIA-KFRFFEGVMKS 381 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW------RHNHALVFKDR 361 A+L YD V+ L + ++EA A LL + G + R + D Sbjct: 382 AARLTYDTVAKVLVDQ-----DAEARAAHAHLLEPLETLHGVYKVLRSARERRGAIDFDT 436 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 + + + GE ++ IV R A++I+EE MIAAN+ A R + D +Y VH Sbjct: 437 VETKIVFGEGRKIEAIVPYERNDAHKIIEECMIAANVAAGRFVADHKIPALYRVHDRPTA 496 Query: 422 ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEP 481 L A+L GL + + + F L ++ + FL + +S + P Sbjct: 497 EKITDLRAMLAEKGLSLGGGDQPSPKDFNALLSQVQGR-ADFLTIQTMILRSLKQAVYSP 555 Query: 482 GP--HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR---PQDEITV---QMAE 533 HFGL E YA +TSPIR+Y D++ HR ++ +++ R DE+ + + Sbjct: 556 DNLGHFGLAHEFYAHFTSPIRRYPDLMVHRAIRHLLRTGAPDRFPYNHDEMVIIGEHCSN 615 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R A RD DWL F+ DK G F + + G+ V L D F Sbjct: 616 NERRADEATRDATDWLKCEFMLDKVG--EVFEGRVASVLGFGLFVELKD-----FFVEGL 668 Query: 594 LH-AVRDELVCSQENGTVQIKGE---TVYKVTDVIDVTIAEVRMETRSI 638 LH + + T+ ++GE VY + D I V +A V ++ R I Sbjct: 669 LHITALTKDYYHFDPVTLSLRGERSGRVYALNDAITVRVARVDLDERKI 717 >UniRef50_Q6SG71 RNB-like family protein n=4 Tax=Bacteria RepID=Q6SG71_9BACT Length = 495 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 142/475 (29%), Positives = 235/475 (49%), Gaps = 35/475 (7%) Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 L++ L R+DLT + F+TID A +D DDA+ L VAIAD + G+ LD Sbjct: 34 LNKNLPRKDLTKVPFITIDGADAKDFDDAVHC-VKNKSSFTLSVAIADVAELVKPGTALD 92 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A R + Y P IPMLP ++S++LCSL NE+R VL C + S G ++ + F Sbjct: 93 NEAIERGTSIYFPSKVIPMLPEKISNNLCSLVPNEIRNVLICEIVFSNSGDLQ-SYNFLE 151 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 A I+S ++ Y +V +L++ S+++ + +R L+++ + R + + Sbjct: 152 ARIKSHKRMTYIEVDKYLKSNSTL---SKSVEDSIRSLSELTHILLKKRSQRQALEIEGQ 208 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + + +G+V +I R +++++EEAM+AAN+CAA + FG+Y +H + Sbjct: 209 EPLLRINNEGKVDEITLPKRLFSHQMIEEAMLAANVCAANFMNKHYKFGVYRIHEEPEEL 268 Query: 423 NADALAALLKTHGLHVDAEEVLTLD------GFCKLRRELDAQPTGFLDSRIRRFQSFAE 476 ++L G D+ + + LD + + ++ A T L S R AE Sbjct: 269 KLESLKNFFSIKGFS-DSYKKIPLDLINQCLSYAREKKLNKALQTVVLQSLKR-----AE 322 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGETATRP--QDEITVQMAE 533 ST+ HFGL LE Y+ +TSPIR+Y D++ HRL+K ++ KG+ A +E V+M++ Sbjct: 323 YSTKEVGHFGLQLERYSHFTSPIRRYPDLMTHRLIKNILNKGDLAINKEEIEEECVEMSD 382 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R+ A R V + +LK G+D F A + I+ G+ +DN F + Sbjct: 383 LERMAERASRQVTQQMICYYLKQYVGSD--FNAVVTGIAEFGLFAE-IDN----FYVSGL 435 Query: 594 LHAV---RDELVCSQENGTVQIKGETV---YKVTDVIDVTIAEVRMETRSIIARP 642 +H D +E +KG+ +++ I VTIA + E R I P Sbjct: 436 IHVTDLPSDRYFYDKEANI--LKGKKTGRSFRLGQNILVTIANISPEERKITLVP 488 >UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_BARGA Length = 758 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 228/460 (49%), Gaps = 26/460 (5%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVAIADPTAWIAEGSKLDKA 244 RED L F+TID +D DDA++A D D +IVAIAD + +I GS LDK Sbjct: 267 REDWRQLPFITIDPPDAKDHDDAVYATKDKDPANNDGWIIIVAIADVSYYIKTGSALDKE 326 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A R + Y P +PMLP LS DLCSLR + RP LA RM A+G + F Sbjct: 327 ALKRGNSVYFPDTVVPMLPERLSHDLCSLREGKERPALAVRMIFDANGNKRKH-SFHRTM 385 Query: 305 IESKAKLVYDQVSDWLENTGDWQPESEAIAEQV---RLLAQICQRRGEWRHNHALVFKDR 361 I +AKL Y +V +E G+ ++ A+ E + A C + R+ + + Sbjct: 386 IRVRAKLSYQEVQLAIE--GNINEKTAALFESILQPLWEAYTCLKAA--RNRRQPLELEI 441 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 + + IL + G + D+V+E + A+R++EE MI ANI A+ L+ IY +H Sbjct: 442 AEKKIILDQNGCIKDVVSETQLEAHRLIEEFMIQANIAASETLKQHHQPLIYRIHEKPSL 501 Query: 422 ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTE 480 A + L + L++ G+ + LT + ++ P ++ I R QS AE + + Sbjct: 502 AKQEILRSFLQSLGIPLSRGSELTSARLNSILAKVTNTPQKELINQVILRSQSQAEYNPK 561 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHR-LLKAVIKGE---TATRPQD--EITVQMAER 534 HFGL L Y +TSPIR+Y D+I HR L+K + G T T+ Q+ EI Q++ Sbjct: 562 NIGHFGLNLHNYTHFTSPIRRYADLIIHRALIKTLKLGNDQLTDTQEQNLAEIATQISLY 621 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R MAER+ D L A +L +K G F I +++ G+ + L F+ + Sbjct: 622 ERRAMMAERETIDRLVAHYLTNKIGRI--FTGRISGVTKAGLFISLDKLNTDGFV---HI 676 Query: 595 HAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVR 632 ++++ E V I + Y+++DV++V + V+ Sbjct: 677 STLKNDYYHFDEAQHVLIGQRSHKGYQLSDVVEVKLITVQ 716 >UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XL74_HIRBI Length = 758 Score = 184 bits (468), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 148/452 (32%), Positives = 216/452 (47%), Gaps = 30/452 (6%) Query: 163 VTLARHNLEKEAPDGVATEMLD---EGLVREDLTALDFVTIDSASTEDMDDALFAKALPD 219 + L H++ E P + E + + REDLT + +TID A D DDA+FA+ D Sbjct: 219 IALHTHDVPDEFPVEIIAEAENATAQKTAREDLTDIPLITIDPADARDHDDAVFARPDED 278 Query: 220 DKLQ----LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 + + VAIAD A++ G+ LD A R + Y P PMLP LS + CSL+ Sbjct: 279 EGNNGGWIVYVAIADVAAYVQHGTALDDEAYKRGNSTYFPDRVAPMLPEALSAEQCSLKE 338 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA--- 332 NE+R A M SA+G + F T+ S AKL Y+Q + D +P+ +A Sbjct: 339 NELRETFAVEMRFSANGN-KIGHRFIRGTMRSAAKLSYEQAQAAI----DGKPDDKAGPL 393 Query: 333 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA 392 + ++ L + G+ R + D P+ R L + G VL + + R A++++EE Sbjct: 394 LETVLKPLWAAYECVGKARTRRQPLELDLPERRVTLDKDGTVLGVFTKDRFDAHKLIEEF 453 Query: 393 MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKL 452 MI AN+CAA L IY VH AL L T G+ T + F L Sbjct: 454 MIQANVCAAESLEKANSPLIYRVHDEPSDEKILALGFFLPTIGMKWARGAKKTAERFNDL 513 Query: 453 ----RRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH 508 RR + + + R QS A + E HFGL L YA +TSPIR+Y D+I H Sbjct: 514 LAQARR---TEHEHLVSEMVLRSQSQARYAPENFGHFGLNLAKYAHFTSPIRRYSDLIVH 570 Query: 509 R-LLKAVIKG-----ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 R L++A+ G + ++ +EI + R + AERD D F+ +K G + Sbjct: 571 RALIRALSLGPDGLSDVESKRLEEIAEHLTTTERRSMAAERDATDRYLVAFMSEKVGAE- 629 Query: 563 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 F I +++ GM V+L D+GA FIPA L Sbjct: 630 -FQGRIAGVTKAGMFVKLDDSGADGFIPAARL 660 >UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacteria RepID=A8I2E1_AZOC5 Length = 814 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 142/422 (33%), Positives = 204/422 (48%), Gaps = 24/422 (5%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDD------KLQLIVAIADPTAWIAEGSKLD 242 RED L VTID +D DDA+ A +PDD + VAIAD A++ GS LD Sbjct: 309 REDWRKLPLVTIDPPDAKDHDDAVHA--VPDDDPDNAGGFIVTVAIADVAAYVRPGSALD 366 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A +R + Y P +PMLP +S+DLCSLR E R LA RM + DG + F Sbjct: 367 REALLRGNSVYFPDRVVPMLPERISNDLCSLRPQEDRAALAVRMVIGKDGRKRSH-SFHR 425 Query: 303 ATIESKAKLVYDQVSDWLENTGD--WQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 + S AKL Y+Q ++ D P E++ + A C + + R + D Sbjct: 426 ILMRSAAKLAYEQAQAAIDGVSDDTTAPLLESVLRPL-YAAYACVK--QARDARQPLELD 482 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ + +L E G V ++ PR A+R++EE MI AN+ AA L K I+ VH G Sbjct: 483 LPERKILLKEDGTVDRVIVPPRLDAHRLIEEFMILANVAAAETLEQKKVPLIFRVHDGPT 542 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEIST 479 A AL L T + + + + F ++ +D + ++ I R QS AE S+ Sbjct: 543 LAKLSALREFLATLDISLPKTDQVRPSHFNRILGMVDGGDSAPLVNQVILRSQSQAEYSS 602 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-------EITVQMA 532 E HFGL L YA +TSPIR+Y D++ HR L + + P+ EI+ ++ Sbjct: 603 ENYGHFGLNLRRYAHFTSPIRRYADLVVHRGLLRTLGADADALPETATVETLAEISADIS 662 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP 592 R AER+ D L A L ++ G F I +R G+ V L + GA F+PA Sbjct: 663 ATERRAMAAERETVDRLIAHHLAEQIG--AVFQGRITGATRAGLFVALDETGADGFVPAA 720 Query: 593 FL 594 L Sbjct: 721 SL 722 >UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuclease R n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VTQ9_9PROT Length = 830 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 145/416 (34%), Positives = 201/416 (48%), Gaps = 18/416 (4%) Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 EDL AL +TID +D DDA+FA+ + D+ +++VAIAD ++ GS LD+ AK R Sbjct: 254 EDLRALPLITIDPKEAKDHDDAVFAEPI-DEGFRIVVAIADVAQYVRPGSPLDQEAKRRG 312 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 + YL +PMLP LS+ LCSL+A E R L C + + +G + + FF A I Sbjct: 313 NSVYLIDRVVPMLPEALSNGLCSLKAGEDRTALCCELIIGPNGGRKRH-RFFRALINCHR 371 Query: 310 KLVYDQVSDWLENTGDWQPESEAIAEQV-RLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 L Y++ + G + + + V L Q R + D P+ + +L Sbjct: 372 GLAYEEAQAAAD--GRLTDRTRDLKDSVIDPLWAAWQALETARRKSPSLDLDMPERQILL 429 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 E G V IV + R A+R++E M+ AN+CAA L IY VH D D L Sbjct: 430 AEDGAVDRIVRKQRLDAHRLIEAYMVTANVCAAETLESANRALIYRVHDVPDEERIDGLR 489 Query: 429 ALLKTHGLHVDAEEVLTLDGFCK-LRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGL 487 L + G + +VL F LR D T + + R Q A STE HFGL Sbjct: 490 VYLSSMGYSLPKGQVLKPAKFNHILRAARDKDETDLVALAVLRTQMQAIYSTENLGHFGL 549 Query: 488 GLEAYATWTSPIRKYGDMINHR-LLKAVIKGETATRPQDEI-------TVQMAERRRLNR 539 L YA +TSPIR+Y D+ HR L+ A G R +DE + + ERR + Sbjct: 550 SLRRYAHFTSPIRRYADLTIHRALVSARRLGPGGMRAEDEAHLADVAEHISVTERRAV-- 607 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 AER D A FL+D+ G D F I ++R G+ V L + GA FIP LH Sbjct: 608 AAERATQDRYLASFLEDREGND--FHGRISGVTRAGLFVTLDETGADGFIPMRSLH 661 >UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID=Q0K976_RALEH Length = 909 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 181/699 (25%), Positives = 304/699 (43%), Gaps = 95/699 (13%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDR--IIAVIHSEK 68 + +L Q G V+ GFGFL D + F+P +++K MH DR + V + + Sbjct: 106 RYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVVGYDRR 165 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVP-DHPLLKDAIPCRAARGLNHEFKEGDW 127 R + E++E +G++ + L + P D + +D + A+G + + G Sbjct: 166 GRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPKAQG---KARVGQV 222 Query: 128 AVAEMRRHPLKGDRSF--YAELTQYITFGDD-----------HFVPWWVTLARHNLEKEA 174 E+ P DR + + + DD + VP + A Sbjct: 223 VSVELIEFP---DRYVQPVGRVVEVLGEIDDPGMEIEIAVRKYGVPHAFSPAAAQEASAL 279 Query: 175 PDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQ---LIVAIADP 231 PD V LD R DL + VTID D DDA++ + + + + LIVAIAD Sbjct: 280 PDEVRQADLDH---RIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIADV 336 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ G+ LD A RA + Y P IPMLP +LS+ LCSL + R + C ++A Sbjct: 337 SHYVRPGTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVDRLCMVCDAVITAK 396 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENT--------GDWQPESEAIAEQVRLLAQI 343 G ++ +F+ A + S A+L Y++V L NT G+ P + + E ++L + Sbjct: 397 GELK-GYQFYPAVMHSTARLTYNEVWSVLSNTKGPEAHKRGELVPHLQNLYELFQVLLKA 455 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 + RG A+ F Y + +G++ I+ R A+R++EE M+ AN+CAA Sbjct: 456 RRARG------AIDFDTTETY-IVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADF 508 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG- 462 L +Y +H G L L+T GL + + + ++ ++ ++P Sbjct: 509 LERFKHPALYRIHAGPSEEKLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAP 568 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG----- 517 L + + R A S + HFGL EAYA +TSPIR+Y D++ HR +KAV+ Sbjct: 569 MLQTMLLRSMQQAVYSPDNIGHFGLSYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQP 628 Query: 518 --------ETATRPQ---------------------------DEITVQMAERRRLNRMAE 542 TA P+ DE+ + + R A Sbjct: 629 AFAHGTELNTAISPKARRLQAKDAEQKAELTAARARRNEAIWDELGLHCSANERRADEAS 688 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELV 602 RDV WL F++DK G+D +A + ++ G+ V+L + + L + Sbjct: 689 RDVEAWLKCYFMRDKLGSD--YAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSD----Y 742 Query: 603 CSQENGTVQIKGETV---YKVTDVIDVTIAEVRMETRSI 638 + +++GE Y++TD + V ++ V ++ R I Sbjct: 743 FQYDEARNELRGERTGIRYRLTDRVRVQVSRVDLDARKI 781 >UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria RepID=A6DBI2_9PROT Length = 650 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 168/554 (30%), Positives = 260/554 (46%), Gaps = 49/554 (8%) Query: 24 GVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPEELVE 80 G V T+KGFGFL ++ Y I + GD +IA +I +K R A+ ++E Sbjct: 49 GKVDITKKGFGFLIPIGVKERDYIIESHHLNGASKGDLVIAEIIKRKKGRPKAKVVYILE 108 Query: 81 -PFLTRFVG-KVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 F+ V K + KN R VP +K P K D AV ++ + +K Sbjct: 109 KSFVYSVVYLKYEFKNGRK--VPVLRNVKTDQPVYVNEKKKTLKKLPDGAVFKVNNYTVK 166 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE------MLDEGLV--RE 190 + + + D +V ++L +N ++E E +D+ + R Sbjct: 167 --------IEEVLGVLQDPWVDEKISLGLYNKKEEFSKKAIKEAKAFGDYVDKLMYPDRV 218 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DLT L F TID + +D DDA++ +K +L VAIAD + ++ +DK AK R F Sbjct: 219 DLTNLSFCTIDPPTAKDHDDAIY---FDKEKNELYVAIADVSEYVYLNGNIDKEAKERGF 275 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + Y P IPMLPRELS+++CSL+ NE R +++ + + E F A I S K Sbjct: 276 SIYFPHKAIPMLPRELSENICSLKENEDRLAFVFKISFDDNNEVIKE-ELFEAIIHSHRK 334 Query: 311 LVYDQVSDWLENTGDWQPE--SEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 YD+V ++LE + E E ++ + L ++ R E R L F + + R L Sbjct: 335 YSYDRVDEFLEGKFENIDEIDKEILSWLMPLWEKVKHIRTE-RLKTGLEF-ESDEIRMSL 392 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 E G + ++ E +++++E+ M+ AN AA++ + FGI+ VH + D L Sbjct: 393 DENGMIKEVKIEKETPSHKLIEDCMLLANKAAAKM----IDFGIFRVHEKPSQTSLDELY 448 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-----TGFLDSRIRRFQSFAEISTEPGP 483 + L G+ VD +E F K+ ++ AQ F+D I R Q A P Sbjct: 449 SELGALGIDVDVDE----KDFVKVVEKIQAQAKELGIKKFVDKLIIRSQQQARYDAACTP 504 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT-----RPQDEITVQMAERRRLN 538 HF LG + Y +TSPIR+Y D+ HRLLKA IK + R + + V+++E R Sbjct: 505 HFALGFDRYTHFTSPIRRYSDLTLHRLLKATIKNQQKIVDYILRNVEALVVKLSELEREA 564 Query: 539 RMAERDVGDWLYAR 552 E D D YAR Sbjct: 565 MKVEWDFYDRKYAR 578 >UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR Length = 818 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 189/669 (28%), Positives = 296/669 (44%), Gaps = 89/669 (13%) Query: 23 EGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVIHS--EKERESAEPEELV 79 +G V GFGF++ + F+ +M KV HGD++IA + K R E++ Sbjct: 124 KGKVIGHPGGFGFVQPEEGGGDLFLGDREMHKVFHGDKVIASVIGVDRKGRREGMIVEII 183 Query: 80 E----PFLTRF-----VGKVQGKNDRLA---IVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 E L R +G VQ N+R+A +P LL + +EG Sbjct: 184 EHANQTILGRLHMEDGLGWVQPNNNRIAQDIFIPQDGLL--------------DAEEGQI 229 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWW-VTLARHNLEKEAPDGVATEMLD-- 184 + E+ P K RS + + + I D+ P + A H + P+ E+LD Sbjct: 230 VMVEVIHQPTK--RS--SAIGKIIEVVGDYLAPGMEIDSAIHAYD--IPNEWPQELLDQL 283 Query: 185 ------------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 EG R+DL +L VTID A ++D DDA+FAK + +L+VAIAD + Sbjct: 284 EAIPDEVTQEDKEG--RKDLRSLPLVTIDGADSKDFDDAVFAKRRKN-GWRLVVAIADVS 340 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ EG+ LDK A R + Y P +PMLP +LS+DLCSL N R + C M++ DG Sbjct: 341 HYVKEGTPLDKEAYERGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVCDMSIDNDG 400 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTG--------DWQPESEAIAEQVRLLAQIC 344 +E +F+ A + SKA+L YDQV + L + G D P E + + +L Sbjct: 401 KLE-RTQFYDAVMNSKARLTYDQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEILKGAR 459 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 RG AL F D + R + E ++ IV R A++++EE M+ AN+ AR L Sbjct: 460 SERG------ALEF-DTTETRIVFDEHRKIEKIVPVVRNEAHKLIEECMLMANVATARYL 512 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL 464 + +Y VH L L GL ++ + + + + + QP L Sbjct: 513 KWHKIPMLYRVHEKPSEERLKNLRTFLGDFGLTLEGGDEPDANDYATITEAVKGQPHEHL 572 Query: 465 DSRIRRFQSFAEISTEPGP--HFGLGLEAYATWTSPIRKYGDMINHRLLK------AVIK 516 + +S + +P HFGL E YA +TSPIR+Y D++ HR ++ V K Sbjct: 573 VGTV-LLRSMNQAVYQPDNLGHFGLNYEYYAHFTSPIRRYPDLLIHRAIRFAWTKQDVSK 631 Query: 517 GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + + + + + R A RD +L FL + G + + A + + G+ Sbjct: 632 FKYSEKDMKALGEHCSGTERRADEATRDAVTFLKCEFLSHRLGEE--YDAVVTAATNFGL 689 Query: 577 RVRLVDNGAIAFIPAPFLHAVR-DELVCSQENGTVQIKGE---TVYKVTDVIDVTIAEVR 632 V L +H E + +KGE VY++ D + V +A+V Sbjct: 690 FVELE-----PLYVEGLVHITELGEDYFHYDASRHCLKGERTGKVYRLGDKLRVQVAQVN 744 Query: 633 METRSIIAR 641 ++ R I R Sbjct: 745 LDDRKIDLR 753 >UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR_HAEIN Length = 782 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 171/597 (28%), Positives = 262/597 (43%), Gaps = 55/597 (9%) Query: 23 EGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIA--VIHSEKERESAEPEELV 79 +G V +GFGFL+VD +K FIP QM++VMHGD ++A + R ++ Sbjct: 94 KGTVIGHREGFGFLQVDGKKDDLFIPNHQMQRVMHGDFVLAQPAGLDRRGRREVRIVRVL 153 Query: 80 EPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI--PCRAARGLNHEFKEGDWAVAEMRRHPL 137 E + VG+ +N +VPD + I P G + G V E++ Sbjct: 154 ESRKKQIVGRFFLENGFGYVVPDDSRIGRDILVPNEHRNGA----RMGQVVVVELQ---- 205 Query: 138 KGDRSFYAELTQYI-----TFGDDHFVPWWVTLA--RHNLEKEAPDGVA------TEMLD 184 +RS A Q I GD+ V +A H++ + P V TE + Sbjct: 206 --ERS--ASFNQPIGVITEILGDNMAKGMEVEIALRNHDILHKFPSAVEKYVKKFTEEVS 261 Query: 185 EGLV--REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 E R DL L VTID D DDA++ + +L VAIAD + ++ S LD Sbjct: 262 EEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEK-HGKGWKLWVAIADVSYYVRLRSTLD 320 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A R + Y P +PMLP LS+ LCSL R + C M +SA G + D F+ Sbjct: 321 VEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQISAKGKLTD-YRFYE 379 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 A + S A+L Y +V+ LE + + + + L ++ Q RH + + Sbjct: 380 AVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLSARHQRGAIDFETI 439 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + +FI G + I R A +I+EE M ANI AA + +Y +H Sbjct: 440 ETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANFMEKHKEPALYRIHATPSEE 499 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEP 481 + L GL ++ T + L ++ +P + + + R S A + Sbjct: 500 KLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTMLLRSLSQAVYHADN 559 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-----------DEITV- 529 HFGL LE YA +TSPIR+Y D+ HR +K ++ E + + DE+ + Sbjct: 560 IGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDTGGYHYSFDEMDLL 619 Query: 530 ----QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 M ERR + A R+V DWL +++D G + F+ I ++ G+ VRL D Sbjct: 620 GNHCSMTERRADD--ATREVADWLKCEYMQDHVGGE--FSGVISSVTGFGLFVRLDD 672 >UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A2L6_PELCD Length = 720 Score = 181 bits (460), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 185/667 (27%), Positives = 300/667 (44%), Gaps = 51/667 (7%) Query: 4 DNPLLAQLKQQLHSQTPRAE----GVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHG 57 D L+ ++++ L S PR+ G V +G+GF+ E Q FIP M++VM G Sbjct: 48 DEGLVRRVRKGLFS-LPRSSEMVVGKVSVHRQGYGFVIPEAAGQADVFIPARYMREVMDG 106 Query: 58 DRI-IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA-A 115 DR+ + V S + ++ VG + + ++P P L I + A Sbjct: 107 DRVAVRVQRSSRGGYEGRVLRVLSRAHQTIVGTYRPGHGYGMVLPSDPALSHGIMLLSPA 166 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGD--RSFYAELTQYITFGD--DHFVPWWVTLARHNLE 171 G H GD V + ++P + + R E+ GD D V + NL Sbjct: 167 PGDAHA---GDLVVVSIAQYPGRREPPRGVMVEV-----LGDPADPQVEILAAAYKFNLP 218 Query: 172 KEAPDG-------VATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQ 223 +E +A + +E L REDL + FVTID + +D DDA+ P ++ Sbjct: 219 REFSTATLEQARSIAPVVREEDLAGREDLRSTLFVTIDGETAKDFDDAVAVSREPGGCMR 278 Query: 224 LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA 283 L VAIAD ++A S +D+ AK R + Y PG +PMLP LS+ +CSL R VL Sbjct: 279 LWVAIADVGHYVAPDSPIDRDAKERGTSVYFPGSCLPMLPEALSNGICSLNPGVDRLVLT 338 Query: 284 CRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQVRLLAQ 342 M G + ++ FF A I SKA+L Y +V+D L P S+ + Q+ +++ Sbjct: 339 AEMLFDKQGVMLES-RFFHAVICSKARLTYREVADVLAAGAIHNPALSDPLISQLHHMSE 397 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 + R R + D P+ +L +G I+ R +A+R++EE M+AAN A+ Sbjct: 398 LASRLQAMRFRRGSLDFDLPEPEIVLDLQGRPDQILRAERTVAHRLIEEFMLAANEAVAK 457 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLK--THGLHVDAEEV--LTLDGFCKLRRELDA 458 L D+ +Y +H + A L GL V + V L G + R D Sbjct: 458 FLSDRNIPLLYRIHESPEVEKLFAFQTFLAHLNIGLVVTDDSVSPTVLQGVLETVR--DR 515 Query: 459 QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--- 515 ++ + R A S++ HFGL + Y +TSPIR+Y D++ HR+L + Sbjct: 516 PEERMVNQFLLRSMKQARYSSDNLGHFGLASDCYCHFTSPIRRYPDLVVHRILSRALSTS 575 Query: 516 KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 K +AT +E+ +++ R AERD+ +F+ DK G F A + D+ G Sbjct: 576 KRSSATVNLEELGDLTSQKERRAMEAERDIVALRRCQFMADKVG--QVFDACVADVQPFG 633 Query: 576 MRVRLVDNGAIAFIPAPFL----HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 + V L D + L + +EL + V + ++++ +V+ V + +V Sbjct: 634 IFVELKDVFVEGLVHVATLTDDYYEFDEEL-----HRLVGQRRRKIFRIGEVVTVQLVKV 688 Query: 632 RMETRSI 638 +E R + Sbjct: 689 NLERREL 695 >UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_SULSY Length = 701 Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 185/605 (30%), Positives = 280/605 (46%), Gaps = 61/605 (10%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 LK+++ + +G V+A E GFGFL D + FIPP +MK + GD ++A + Sbjct: 61 LKREIQEKENLIKGKVEAHESGFGFLIREDGEPDLFIPPIEMKYLFDGDIVLAEEKIYRG 120 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR--AARGLNHEFKEGDW 127 ++ A+ +++E + VGK++ + +R + LL IP + + +++ ++ Sbjct: 121 KKEAKIVKVLERRVKTAVGKLKQEGNRYFVY----LLDFVIPHKIYVDKKEAKKYELDNY 176 Query: 128 AVAEMRRHP---LKGDRSFYAEL-----TQYIT--FGDDHFVPWWVTLARHNLE--KEAP 175 V E+ R+P ++ +L TQ + + +P H+ E KEA Sbjct: 177 VVVEILRYPEPKVEAKGRIIKDLGKVKNTQTVAEIVARKYDLPLT-----HSPEALKEAE 231 Query: 176 DGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 + + + R+DLT TID S D DDA+ A DK +L V IAD + ++ Sbjct: 232 KLPSVVKITKN--RKDLTKQICFTIDPESARDHDDAV-AIEKEGDKYRLYVHIADVSHYV 288 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 EGS +DK A R T YLP + MLP L+ LCSL+ E R C M + G + Sbjct: 289 KEGSVIDKEAFQRGNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVV 348 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAI-------AEQVRLLAQICQRRG 348 + + + + IESKAKL YDQ + QPE E + ++ LA+I + Sbjct: 349 E-YDIYESVIESKAKLTYDQALGIILG----QPELEKAFPYLVKPLKHMKELAEILMKAK 403 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 E R + D P+ + + + G D+V R +ANRI+EE MI AN A+ + +K Sbjct: 404 EKRGSIDF---DMPESQILFDQYGNPYDVVPYERHLANRIIEEFMIIANETVAKHM-EKN 459 Query: 409 GFG-IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR 467 G+ IY VH A L+ G V E D K +++ G + Sbjct: 460 GYPFIYRVHEKPKLEKVMAFVDLIAGLGYKV---EYPKKDVDSKFIQKIIEMAVGTPEES 516 Query: 468 IRRFQSF-----AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG----- 517 + RF + A S E HFGL E Y +TSPIR+Y D+ HRLLK IK Sbjct: 517 LVRFLALRTMKQARYSPENIGHFGLASECYTHFTSPIRRYADVWVHRLLKKAIKKKFTKK 576 Query: 518 --ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 E + D I Q +ER R+ AERD D L R LKDK G +F I + G Sbjct: 577 DMEELPKKLDIIAKQCSERERVADDAERDALDILKLRILKDKVG--EKFEGIITGVMAVG 634 Query: 576 MRVRL 580 + + + Sbjct: 635 LFIEI 639 >UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_AMMDK Length = 715 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 162/584 (27%), Positives = 258/584 (44%), Gaps = 38/584 (6%) Query: 24 GVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELV 79 G ++ +G+ FL D + FIPP + MH DR+ + + E E ++ Sbjct: 70 GRLECHPRGYAFLVPDREGEPDVFIPPGCLGGAMHQDRVAVRLFPGSHGRTREGEVVRVL 129 Query: 80 EPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKG 139 + VG + K + +VPD P L + +G + + G+ V E+ +P Sbjct: 130 RRAHRQLVGTLYKKRRSVFVVPDDPRLTHQVVI--PKGKLNGARNGEKVVVELTTYPGPY 187 Query: 140 DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEG------------L 187 + + + + D + V R+ L PDG E+ +E Sbjct: 188 TPA-EGRVVEVLGPEDAPGMDMLVLCRRYGL----PDGFPPEVEEEAENIPLTIRPEELA 242 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL VTID +D+DDA+ + L D +L V IAD + ++ EGS LD+ A Sbjct: 243 GRRDLREWLIVTIDGEDAKDLDDAVSLELLHDGTYRLGVHIADVSYYVREGSALDREAFQ 302 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + YLP IPMLP LS+ +CSL E R L+ M + + G + + E F + I S Sbjct: 303 RGTSIYLPDRVIPMLPPRLSNGICSLNPEEDRLTLSVLMRVDSKGEVLE-YELFPSVIRS 361 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 KA+L Y V+D+L G + + L+ ++C R + + P+ + + Sbjct: 362 KARLTYRAVNDYLAGRGGVPAPLPGLGRMLELMQELCLCLRRRRLKQGAIDFNLPETKVV 421 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR-VLRDKLGFGIYNVHMGFDPANADA 426 L E+G +D+ R I +I+EE M+ AN AR + +L F IY +H DP + Sbjct: 422 LDEEGRTVDVYPAERGIGEQIIEEFMLLANETVARHAAKLQLPF-IYRIHPQPDPEKVAS 480 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHF 485 L LL + G L F ++ + +P +++ + R A + E HF Sbjct: 481 LEELLASLGYQNTRLGTLEPARFQEVLEAVAGKPEERLVNAVMLRSLKQARYAAERSEHF 540 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ---------DEITVQMAERRR 536 GL E Y +TSPIR+Y D+ HR+L+ + P+ E Q +ER R Sbjct: 541 GLASEYYTHFTSPIRRYPDLFIHRVLRETVLKGAGLSPRRRARLEKLAQEAAAQSSERER 600 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 L ER+ D F+ DK G + +A I ++ G+ V L Sbjct: 601 LAMEVEREAVDIKKVAFMVDKVGRE--YAGFISGVTNWGLYVML 642 >UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BU01_GRABC Length = 812 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 149/483 (30%), Positives = 227/483 (46%), Gaps = 31/483 (6%) Query: 163 VTLARHNLEKEAPDGVATEMLDEGLV----REDLTALDFVTIDSASTEDMDDALFAKALP 218 + + H++ + PD +E V REDL + +TID D DDA+FA+ Sbjct: 299 ICIETHDIPQIFPDEALSEARKARAVPLEKREDLRDIPLITIDGEDARDFDDAVFAERAE 358 Query: 219 DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEV 278 +D +LIVAIAD ++ GS LD+ A R + Y P +PMLP LS+ CSLR +E Sbjct: 359 NDGFRLIVAIADVAHYVRPGSALDREAFKRGNSCYFPDRVVPMLPEALSNGWCSLRPDED 418 Query: 279 RPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVR 338 R L M ++A G + F + S A+ Y++V Q EA E + Sbjct: 419 RGCLFVEMMINAGGG-KIRHRFGRGLMRSTARRTYEEV----------QQAHEAGDETLD 467 Query: 339 LLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANI 398 L + R + D P+ + IL E G V I+ PR ++R++EE M+ AN+ Sbjct: 468 ALYGAYHALIKARTARGTLDLDLPERKVILNEAGSVDAIIPRPRLDSHRLIEEFMVLANV 527 Query: 399 CAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV-DAEEVLTLDGFCKLRRELD 457 AA L +Y VH +AL L + G+ + A ++ D L++ Sbjct: 528 AAAEELERLHRPCMYRVHAPPSDEKTEALRGFLDSFGISLPPAGQIHPRDLDHILKQVAG 587 Query: 458 AQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 + ++ + R QS AE + + HFGL L YA +TSPIR+Y D++ HR L A +K Sbjct: 588 TEHAALINETMLRSQSQAEYNPDNIGHFGLALSRYAHFTSPIRRYADLLVHRALIAGLKL 647 Query: 518 ETATRPQDEIT--VQMAER----RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 + DE + V +AE R MAERD D A F+ D+ G RFAA I + Sbjct: 648 GVGSLEDDEASRFVDIAEHITATERRAAMAERDAIDRYLAAFMADRVG--ARFAARISGV 705 Query: 572 SRGGMRVRLVDNGAIAFIPAPFLHA---VRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 +R G+ + + +NGA +P L + DE +E + V+++ + V + Sbjct: 706 TRFGLFITVEENGASGIVPISSLPDDFWIHDE----REQALIGRNSRAVWRLAQSVTVRL 761 Query: 629 AEV 631 AE Sbjct: 762 AEA 764 >UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR40_CLOB8 Length = 755 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 161/583 (27%), Positives = 272/583 (46%), Gaps = 36/583 (6%) Query: 24 GVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE----KERESAEPEE 77 G +++ KGFGFL E + QK FIP + M+GD+I + E K+RE E E Sbjct: 94 GSLQSHSKGFGFLIPEEEGQKDVFIPSNCINGAMNGDKISVRVTREDTKTKKRE-GEVVE 152 Query: 78 LVEPFLTRFVGKVQ-GKNDRLAIVPDHPLLKDAIPCRAAR-GLNHEFKEGDWAVAEMRRH 135 ++E TR VG + KN + D + KD + R G N +GD ++ + Sbjct: 153 IIERNTTRIVGVYEDSKNFGFVVSEDPRISKDVFISKKDRNGAN----DGDVVTVKITKW 208 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-------APDGVATEMLDEGLV 188 P + +R +T+ + D + + + + L +E +G++ E+ +E Sbjct: 209 P-EENRKAEGVVTEVLGRKGDRGIDILMIIKKLGLPEEFSEKVQKYAEGISDEIDEEEYK 267 Query: 189 -REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL L VTID +D+DDA+ + L + +L V IAD T ++ E S LDK A Sbjct: 268 GRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVTHYVKENSPLDKEALK 327 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 RA + YL +PMLPR+LS+ +CSL R L C M + G + D+ E + I++ Sbjct: 328 RATSVYLIDRVVPMLPRKLSNGICSLNPRVDRLTLTCFMEIDHKGKVVDH-EIVESVIKT 386 Query: 308 KAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 ++ Y V+ L +N + + + + +++ ++C R + + + + Sbjct: 387 NERMTYKDVTKILRDNDEELIKRYDYLVDDFKMMEELCGILRNKRTKRGAIDFEIAEAKI 446 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYNVHMGFDPANAD 425 L E G+ ++I R I+NR++EE M+AAN A + L F +Y +H D Sbjct: 447 TLNELGKPIEIKPYDREISNRMIEEFMLAANETVAEHMFGTHLPF-VYRIHESPDEEKLA 505 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAEISTEPGPH 484 + G + E + F ++ ++ + + + + R A + E H Sbjct: 506 KFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKNEETVVSTLLLRSMMQARYAPECSGH 565 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-ATRPQDEITV------QMAERRRL 537 FGL E Y +TSPIR+Y D+ HR++K + GE TR + Q +E R Sbjct: 566 FGLAAEYYCHFTSPIRRYPDLQIHRIIKEYLHGEVDGTRINKLKNIVGYAAKQSSEMERK 625 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + AER+V D A +++++ G + F I ++ G+ V L Sbjct: 626 AQDAEREVDDLKKAEYMQERIGQE--FEGIISSVTSFGIFVEL 666 >UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobium etli RepID=UPI0001903083 Length = 747 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 224/459 (48%), Gaps = 28/459 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAK--ALPDDKLQLIV--AIADPTAWIAEGSKLDKA 244 RED + +TID A +D DDA++A+ PD+ +IV AIAD + ++ S LD+ Sbjct: 250 REDWRDVPLITIDPADAKDHDDAVYAELDPSPDNPGGVIVTVAIADVSWYVRPNSPLDRE 309 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A R + Y P +PMLP +S+DLCSL+ RP LA RM+ S++G + F Sbjct: 310 ALKRGNSVYFPDRVVPMLPERISNDLCSLKEGLDRPALAVRMSFSSEGR-KIGHTFHRIM 368 Query: 305 IESKAKLVYDQVSDWLENTGDWQ--PESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 ++S AKL Y Q ++ D + P E I + + + +R + R L D P Sbjct: 369 MKSAAKLSYQQAQAAIDGNADDKTGPMLEPILKPLWRAYAVMKRGRDRRQPLEL---DMP 425 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + + +L G V + PR A++++EE MI AN+ AA L K +Y +H G A Sbjct: 426 ERKILLKPDGTVDRVFVPPRLDAHKLIEEMMIQANVAAAETLEKKRQVLVYRIHDGPTLA 485 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKL--RRELDAQPTGFLDSRIRRFQSFAEISTE 480 + L L T G+ + + + F + + E A T ++ + R QS A S E Sbjct: 486 KQEVLREFLATLGISLAKGGNVRANSFNGILAKAEGTAHQT-MVNEMVLRSQSQAIYSPE 544 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-GETATRPQ-----DEITVQMAER 534 HFGL L YA +TSPIR+Y D+I HR L + GE P D+I +++ Sbjct: 545 NIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGFGEGGITPDEEAALDDIAAEISTF 604 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R AER+ D L A L + G + FA + +++ G+ + L D GA FIP L Sbjct: 605 ERRAMAAERETIDRLIAHHLSTRVGEE--FAGRVSGVTKSGLFIALPDYGADGFIPISTL 662 Query: 595 HAVRDELVCSQENGTVQIKGETV---YKVTDVIDVTIAE 630 + D + + + + GE Y++ D + V +AE Sbjct: 663 GS--DYFIYDEAHQA--LSGERTGLGYRLGDSVTVKLAE 697 >UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2V6_DESAC Length = 722 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 146/485 (30%), Positives = 231/485 (47%), Gaps = 34/485 (7%) Query: 172 KEAPDGVATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 ++A +A E+ E + R DL +L FVTID A D DDA+ D +L VAIAD Sbjct: 227 EQAASAIAAEVPPEVVAARADLCSLPFVTIDGADARDFDDAVCLARSEDGHWRLHVAIAD 286 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 ++ EGS LD A+ R + Y P +PMLP+ LS+ +CSL+ + R V+ +T Sbjct: 287 VGYYVEEGSALDLEARERGTSVYFPSRCLPMLPQALSNGICSLQPEKERLVVVAEITFDD 346 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 G N E + ATI S+ +L+Y+QV L+ P SE + E + + + Q Sbjct: 347 LGR-RLNFEAYRATIRSRQRLIYEQVQQVLDGQVPEIPVSEPLTEMLHQMQHLAQSLRHR 405 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R + + D P+ I ++G ++ I R ++R++EE M+ AN A + + Sbjct: 406 RLHRGAIDFDLPEANVIFDDEGRIVRIGRRSRLDSHRLIEEFMLCANEAVAEFILSRRET 465 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC--KLRR---ELDAQPTGFLD 465 G++ +H D + + L T L + +E DG +LRR E++ F Sbjct: 466 GMFRIHESPDIRSMQSFQQFLATLNLGITLDE----DGISARELRRLLHEVEGTSLEFSV 521 Query: 466 SRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG------- 517 +RI R A E HFGL +AY +TSPIR+Y D++ HRLL ++ G Sbjct: 522 NRILLRSMKQARYDAENSGHFGLASDAYCHFTSPIRRYPDLLVHRLLLQILDGRADWEAD 581 Query: 518 ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 E R D T AERR + AERD+ D +F++DK G TR++ I ++ G Sbjct: 582 EPLPRLADAATA--AERRAME--AERDIVDLRKCQFMEDKIG--TRYSGYITSVNAFGFF 635 Query: 578 VRLVDNGAIAFIPAPFLH--AVRDELVCSQENGTVQIKG--ETVYKVTDVIDVTIAEVRM 633 V L + F +H + D+ E + + ++V D ++V + +++ Sbjct: 636 VELDE-----FFVEGLVHIRTLSDDYYVFDEERLILVGQARRKTFQVGDTVEVEVWQIKS 690 Query: 634 ETRSI 638 R I Sbjct: 691 AAREI 695 >UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0TXI0_FRAP2 Length = 766 Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 139/465 (29%), Positives = 222/465 (47%), Gaps = 38/465 (8%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL +FVTID +D DDA++A +L VAIAD + ++ + S LD AK R Sbjct: 261 RVDLRNENFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVAIADVSNYVEKDSSLDLDAKRR 320 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + + Y PG+ IPMLP +LS+ LCSL+ NE R L C M +S +G + +F++A I SK Sbjct: 321 STSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSLVCEMNISKEGKLS-RYKFYSAVINSK 379 Query: 309 AKLVYDQVSDWL--------ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 A+L Y +V+ + E T + P + E ++L Q Q RG A+ F D Sbjct: 380 ARLTYTEVAKLIEKKQNTIVEKTPELVPNIFDLYELYKVLHQARQERG------AIDF-D 432 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 + + IL + + IV R A+R++EE M+ AN+ AA+ + VH Sbjct: 433 TVETQIILNDHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHKKTSPFRVHSEPK 492 Query: 421 PANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSF--AE 476 + L L HG+H+ +T ++ + +P + D ++ +S A Sbjct: 493 EDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDSIKDRP-DYDDIQMMTLRSMNQAV 551 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI----KGETATRPQD--EITVQ 530 S HFGL Y +TSPIR+Y D++ HR++K++I G +P + I Sbjct: 552 YSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEYEHGGADYKPSELANICEN 611 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD---NGAIA 587 +++ R A + V +WL F++D G A+I ++ G+ L D G I Sbjct: 612 ASDQERNADGASKQVENWLKCYFMQDYIG--HVLEAQIKHVNGLGLFAELKDMYIEGLIH 669 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVR 632 P + + DE ++ + + VYK+ D+T+ VR Sbjct: 670 VSAIPGDYYIYDE----AKDILIGKRTHKVYKIGQ--DITVRVVR 708 >UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria RepID=B9L5L4_NAUPA Length = 652 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 162/558 (29%), Positives = 258/558 (46%), Gaps = 49/558 (8%) Query: 24 GVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPEELVE 80 G V T+KGFGFL +K Y I + GD +IA + ++K R A+ ++E Sbjct: 49 GKVDVTKKGFGFLTPLGVKEKDYLIEAEHLNGAGRGDLVIAEKLFNKKGRPKAKVVYILE 108 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGD 140 + V + + +P +K + A K + AV ++ + K Sbjct: 109 KAFSVSVVYLTFEYKNNKKIPVLRNIKTDLQTYVAEKKKTLKKLPEGAVFKVDNYTNK-- 166 Query: 141 RSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV--------REDL 192 + + DD +V ++LA +N ++E E G R DL Sbjct: 167 ------IIDVLGVLDDPWVDEKISLALYNKKEEFSKKAIAEAEAYGDYVEKEFYPNRVDL 220 Query: 193 TALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTN 252 T L F TID + +D DDA++ +K +L VAIAD + ++ +DK AK R F+ Sbjct: 221 TDLSFCTIDPPTAKDHDDAIY---FDKEKNELYVAIADVSEYVYLNGNIDKEAKERGFSI 277 Query: 253 YLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLV 312 Y P +IPMLPR+LS+++CSL+ E R ++ L+ + E F A I+SK K Sbjct: 278 YFPHKSIPMLPRQLSENICSLKEQEDRLAFVFKIKLNNKNEVVKE-ELFEAIIKSKRKYS 336 Query: 313 YDQVSDWL----ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 YD+V ++L ENT + E I E + L + ++ R L F + + L Sbjct: 337 YDRVDEFLDGRFENTDETDNE---ILEWLMPLWEKVKKIRTKRLKTGLDF-SSDEIKMTL 392 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 E+G + I E +++++E+ M+ AN AA++ + FGI+ VH + D L Sbjct: 393 NEQGLIEKIELEKETPSHKLIEDCMLLANKAAAKM----IDFGIFRVHEKPSSNSIDELY 448 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-----LDSRIRRFQSFAEISTEPGP 483 L G+++D EE F K+ R++ Q +D I R Q A + Sbjct: 449 ESLTALGINIDVEE----KDFVKVVRDIQKQAKMMGIEKEVDKLIIRSQQQARYDAKNIG 504 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-----ETATRPQDEITVQMAERRRLN 538 H+ LG E Y +TSPIR+Y D+ HRLLK++I+ E R + + V+++E R Sbjct: 505 HYALGFEKYTHFTSPIRRYSDLTLHRLLKSIIRNDKKQMEFILRNIEALVVKISELEREA 564 Query: 539 RMAERDVGDWLYARFLKD 556 E D D YAR+ K+ Sbjct: 565 MKVEWDFYDRKYARYAKE 582 >UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=B0S130_FINM2 Length = 701 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 166/616 (26%), Positives = 269/616 (43%), Gaps = 48/616 (7%) Query: 24 GVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEP 81 G ++ + F + D + FI + +H D+++ I EK + + PE V Sbjct: 70 GTIQGSGSDFCYFIPDDENVDDIFIAKKDLNGAIHKDKVLVTITVEK-KPNRSPEGKVLQ 128 Query: 82 FLTRFVGKVQGKNDR-----LAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 L+R K+ G D I+ D K G + K D V ++ + P Sbjct: 129 ILSRETKKLVGTFDEAKGYGFVILDDK---KYGFDVFVQSGNKNGAKNNDKVVVKLIKTP 185 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLV 188 K ++ + + + DD + + L E P V + + E Sbjct: 186 SKNHKNPEGVIVEVLGGKDDPGIDIYSIAKTFKLPYEFPKKVKQQAKEIEQHVDESEKKS 245 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D L V+ID + +D DDA+ + + L V IAD + ++ + + LDK A R Sbjct: 246 RMDFRDLLTVSIDGSDAKDFDDAI-SITKKGENFVLYVHIADVSHYVKKNTALDKEAFRR 304 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + Y+ IPMLP ELS+ +CSL NE R L +M +S G D +F+ + I S Sbjct: 305 GTSVYMLDRVIPMLPVELSNGICSLNPNEDRLCLTIKMEISPTGKTLD-YKFYESVINSD 363 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 +L+Y VSD+LE+ D E E + + + L+ ++ + R + D P+ + IL Sbjct: 364 YRLIYKNVSDFLEDI-DNPYEDEKLTDNLLLMKELYEILSARRKKRGSIDFDFPETKIIL 422 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG------IYNVHMGFDPA 422 E +V+D+ + RRI N+++EE M+ N A FG +Y VH D Sbjct: 423 DENSKVIDVTKDERRIGNKLIEEFMLITNETVAS------HFGYLDRPFLYRVHEEPDEE 476 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEP 481 + +L G H+ + + + D + ++ ELD +P L S + R AE S P Sbjct: 477 KVNTFKRILSNFGYHLKGKNLYSKD-YQRILNELDGKPEKPLLASLLLRSMQKAEYSENP 535 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-------ITVQMAER 534 HFGL Y +TSPIR+Y D+ HR++K I + T + E I Q + Sbjct: 536 SIHFGLASMFYTHFTSPIRRYPDLFIHRIVKNFINHKPDTNNEKEFMKYIKDIAKQCSAT 595 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R AER+ D A ++ + D F I +++ G+ V+L DN + F Sbjct: 596 ERRAEEAEREAIDMKSAEYM--QQHIDEEFEGIISSLTKFGIFVQL-DNTIEGLV--QFQ 650 Query: 595 HAVRDELVCSQENGTV 610 + D V ++N TV Sbjct: 651 SMIDDYYVFDEKNYTV 666 >UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H5E0_9FIRM Length = 705 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 164/592 (27%), Positives = 269/592 (45%), Gaps = 35/592 (5%) Query: 31 KGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTR--FV 87 K F F+ + D FIP + M GD ++ + E ++ E++ + V Sbjct: 76 KNFAFVMLEDESGDIFIPGRFTRGAMPGDSVLVEKFAHPRVEGSDEGEILAVLEQKNDMV 135 Query: 88 GKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAEL 147 G V+ RL VPD AI R K+GD E+ + +G R + Sbjct: 136 GTVRRIEGRLKFVPDDC---PAISMTIQRDCEGGAKDGDKVAVEILQ---RGTRQEDHRV 189 Query: 148 TQYITFGDDHFVPWWVT--LARHNLEKEAPDGVATEM--LDEGLVRE-------DLTALD 196 + FG L ++ P+ V E ++ V E DL AL Sbjct: 190 GVSMRFGSCEEAKRCAKALLYAKDIHTRFPEKVRDEAKKFEDMTVSEEDCKGRMDLRALP 249 Query: 197 FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPG 256 TIDSA T+D+DDA+ LP +L V IAD + ++ GS+L++ A RA + Y Sbjct: 250 IFTIDSAETKDIDDAVSLTRLPGGGYELGVHIADVSHYVKPGSELNEEAFNRATSVYYAD 309 Query: 257 FNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQV 316 +PMLP+ LS+ +CSL E+R +C M L DG + D +F + I S+ K VY ++ Sbjct: 310 QVVPMLPKSLSNGICSLNEKELRLAFSCLMRLDQDGNLTD-YKFVKSIICSRVKGVYSEI 368 Query: 317 SDWLENTGDWQPESE--AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEV 374 + L T D + +++ + +Q+ + ++ R R + + + + IL E G Sbjct: 369 NALLAGTADAETQAKYAEVLDQLPAMKELYAHRARLRKERGCIDFESGEVKLILDENGHC 428 Query: 375 LDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTH 434 +D+ + ++EE M+ AN CAA R K +Y VH + + L +LL+ Sbjct: 429 IDVKKRTSGESEAMIEEFMLLANQCAAHFARVKQIPFVYRVHEEPNGEKLERLHSLLQAC 488 Query: 435 GLHVD-AEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAY 492 G++ A+EV T + + P +++ + R S A +P H+GL L+ Y Sbjct: 489 GINDHFAKEVPTPKELSAILEGVRGTPFEQIVNTGMLRCMSKACYEEKPKGHYGLVLKDY 548 Query: 493 ATWTSPIRKYGDMINHRLLKAVIKG---ETA----TRPQDEITVQMAERRRLNRMAERDV 545 A +TSPIR+Y D+ HR++ ++ G ET T ++ + Q +ER L ER Sbjct: 549 AHFTSPIRRYPDLAIHRMMTDLLSGTDKETMIVRYTDFAEKASKQSSEREVLAVQIERKA 608 Query: 546 GDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 D+ A + + G + I +++ G+ V L +NG F+PA L A Sbjct: 609 EDYYKAEYARRHLG--ECYEGIISGVTQRGIFVEL-ENGVEGFVPASSLTAT 657 >UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8GZL3_CAUCN Length = 760 Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 158/502 (31%), Positives = 225/502 (44%), Gaps = 45/502 (8%) Query: 120 HEFKEGDWAVAEMRRHPLKGDR--SFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 H+FKEGD +A++ H G R ++ + + +D + + H + P G Sbjct: 190 HDFKEGDLVLAQVGTH---GGRYGPKPGKVLEVVGTENDPRAASLIAIHSHGI----PTG 242 Query: 178 ----------VATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQ---- 223 A E G REDL L FVTID D DDA++A D+ + Sbjct: 243 FSEAAEAEAKTAVEPTLAG--REDLRDLPFVTIDPVDARDHDDAVYAHPDEDETNKGGFV 300 Query: 224 LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA 283 + VAIAD A++ GS LD+ A+ + + Y P PMLP LS+ LCSLR +E R LA Sbjct: 301 VWVAIADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLRESENRATLA 360 Query: 284 CRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQI 343 RM G + + F + S AKL Y+Q + D QP+ +A +L + Sbjct: 361 VRMVFDKSGRKKGH-RFVRGLMRSAAKLSYEQAQAAI----DGQPDDKAGPLLDPILKPL 415 Query: 344 --CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 R + + D R I+ + GE+ I A++++EE M+ AN+CAA Sbjct: 416 WDAYRTMKIGRDARSPLAIESDERRIIIKGGEITSITKRASLEAHKLIEEMMVQANVCAA 475 Query: 402 RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT 461 L K IY VH LA L+T + E F KL E P Sbjct: 476 ESLEAKRSPLIYRVHDTPSLEKVQNLADFLQTLEIRWSKGEAPQTARFNKLLEETRESPN 535 Query: 462 -GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHR-LLKAVIKGET 519 ++ + R Q A S + HFGL L YA +TSPIR+Y D+I HR L++A+ G Sbjct: 536 AAIINEVVLRTQMQAHYSADNIGHFGLNLAKYAHFTSPIRRYADLIVHRGLIRALGLGTD 595 Query: 520 ATRPQDEITVQ-------MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 QD ++ AERR + AERD D A FL D+ G F I ++ Sbjct: 596 GLTDQDIAQIKDTAEVITHAERRAM--AAERDATDRYIAAFLADRVGAT--FEGRITGVT 651 Query: 573 RGGMRVRLVDNGAIAFIPAPFL 594 R G+ ++L D GA +P L Sbjct: 652 RFGLFIKLADTGADGLVPVSSL 673 >UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID=A1WUS9_HALHL Length = 842 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 175/598 (29%), Positives = 272/598 (45%), Gaps = 55/598 (9%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQKSYF-IPPPQMKKVMHGDRIIAVIHSEKERESAE 74 HS+ R G V G GFL D + P QM+ ++HGDR +A I E + + Sbjct: 90 HSELVR--GRVMGRPDGSGFLLPDGTGDRLALSPRQMRCLLHGDRAVARITGRDEHGTPQ 147 Query: 75 PE--ELVEPFLTRFVGKVQGKNDRLAIVPDHP-LLKDAIPCRAARGLNHEFKEGDWAVAE 131 E E++E + G+ ++ +VP++ L +D + RG ++G+ AVAE Sbjct: 148 GELVEILERGNRQITGRFFEEHGVGFLVPENKRLQQDVLLAPDGRG---GAEDGELAVAE 204 Query: 132 M------RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML-- 183 + RR P+ L + I G++ V + H + + P V E+ Sbjct: 205 ILAQPNERRQPIG---RIIQVLGRTIHVGEEDMVAARI----HGIPMDWPAEVEKEVAAF 257 Query: 184 --------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDK-LQLIVAIADPTAW 234 EG R DL L VTID A +D DDAL+ + P K +L+VAIAD + + Sbjct: 258 GEEVPEADKEG--RTDLRRLPLVTIDGADAKDFDDALYCE--PTAKGWRLVVAIADVSHY 313 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + G+ LD+ A++R + Y P +PMLP LS+ LCSL R + C M L +G + Sbjct: 314 VRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNGLCSLNPKVDRLAMVCDMLLQGNGKV 373 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ---ICQRRGEWR 351 + F+ A I+S A+L Y+Q + + + GD + S E VR L + + + R Sbjct: 374 LRS-RFYRAVIQSAARLTYEQAAAAVVD-GDRKVRSAIGDEVVRHLENLHGLYKTLRKAR 431 Query: 352 HNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 + D + ++G V+ + R +++VEE MIAAN+C A+ L Sbjct: 432 DERGAIDFDTTETEMRFDDEGRVVAVEPTERNDFHKVVEECMIAANVCTAKFLLKNKVPS 491 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRR 470 +Y VH + L L GL + + T + ++ + +P L ++ + R Sbjct: 492 LYRVHERPGEQKLEQLKEFLAQAGLELGGGDEPTGKDYGRIMEQARERPDRHLIETVLLR 551 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR----PQDE 526 AE + HFGL LEAY +TSPIR+Y D++ HR + VI G D Sbjct: 552 SMQAAEYRPDNAGHFGLALEAYTHFTSPIRRYPDLVIHRGIGHVIDGHRGRSFPMTHNDL 611 Query: 527 ITV----QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 +T+ MAERR A RD L +L D G + F I ++ G+ V L Sbjct: 612 VTLGEHCSMAERR--ADEATRDAEMTLKCEYLSDHLGDE--FTGVIAAVTSFGLFVSL 665 >UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RNR_SHIFL Length = 813 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 170/651 (26%), Positives = 281/651 (43%), Gaps = 51/651 (7%) Query: 23 EGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIA--VIHSEKERESAEPEELV 79 +G V G+GFL V+ +K ++ QMK +HGD+++A + K R A ++ Sbjct: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 Query: 80 EPFLTRFVGKVQGKNDRLAIVPDHPLLK--DAIPCRAARGLNHEFKEGDWAVAEMRRHPL 137 P ++ VG+ + +VPD L IP G F V E+ + P Sbjct: 146 VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF----VVVVELTQRPT 201 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE---------KEAPDGVATEMLDEGLV 188 + ++ ++ + GD+ V +A E ++ G+ E+ +E Sbjct: 202 RRTKAV-GKIVE--VLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 Query: 189 -REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL L VTID D DDA++ + +L VAIAD + ++ + LD+ A+ Sbjct: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARN 318 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + Y P IPMLP LS+ LCSL R + C MT+S+ G + +F+ A + S Sbjct: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL-TGYKFYEAVMSS 377 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 A+L Y +V L+ D + + + + + L + + + R + + + +FI Sbjct: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 + + I R A++++EE MI ANI AAR + ++ +H + Sbjct: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFG 486 ++L GL + + +L + +P L + + R A E HFG Sbjct: 498 RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEIT----------------VQ 530 L L++YA +TSPIR+Y D+ HR +K ++ E + T Sbjct: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 MAERR A RDV DWL F+ D+ G F I ++ G VRL D FI Sbjct: 618 MAERR--ADEATRDVADWLKCDFMLDQVG--NVFKGVISSVTGFGFFVRLDD----LFID 669 Query: 591 APFLHAVRDELVCSQENGTVQIKGET---VYKVTDVIDVTIAEVRMETRSI 638 + D + ++ GE+ Y++ D ++V + V M+ R I Sbjct: 670 GLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 >UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=2 Tax=Deltaproteobacteria RepID=Q1NL99_9DELT Length = 782 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 170/604 (28%), Positives = 264/604 (43%), Gaps = 65/604 (10%) Query: 31 KGFGFL----EVDA---QKSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPEELVEPF 82 +GFGF DA K F+PP M +HGD+I+ V+ ++ ++E Sbjct: 147 RGFGFAMLSESTDAARYHKDIFLPPDAMGSAVHGDKILVLVVKGRADKAEGRVLRVLERG 206 Query: 83 LTRFVG-KVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDR 141 +T VG V G L D L + R G + G+ V E+ R +G+ Sbjct: 207 ITSLVGIYVSGATSGLVTPEDERLPFKVVVRRPQSG---GARNGEAVVVEISRFKEQGN- 262 Query: 142 SFYAELTQYITFGDDHFVPWWVTLA--RHNL-EKEAPDGVA-----TEMLDEGLVREDLT 193 E GD P + +A H L + AP +A ++ ++ R DL Sbjct: 263 ---PEGRIVEVLGDPAAAPVQIEIAIRSHQLPHRFAPALLAEVEAYSDKIEPQASRLDLR 319 Query: 194 ALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNY 253 + VTIDS S D DDA+ + L L+L V+IAD + ++ GS LD A R + Y Sbjct: 320 EIPHVTIDSESARDYDDAVAVEPLAKGGLRLYVSIADVSHYVQPGSALDDEAYARGTSVY 379 Query: 254 LPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVY 313 PG +PMLP LS+DLCSL ++ R ++ + G + F + I S+ +L Y Sbjct: 380 FPGRVVPMLPERLSNDLCSLVPDQDRYTMSAIIDFDGKGQ-RKSARFGKSLIRSRHRLTY 438 Query: 314 DQVSDWLENT--------GDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 +V LE+ D P+ E IA+ L Q+ RRG + + P+ Sbjct: 439 TKVKAMLEDREPELCRRYADILPDLEQIAKLAANLNQVRMRRGS-------IGFEIPEAD 491 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 +L + G + I R +A++++EE M+AAN A L + +Y +H DP Sbjct: 492 IVLDDDGHIDHIRRGERNMAHKLIEECMLAANEAVAEFLERQQAPTLYRIHEDPDPVKVT 551 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR--IRRFQSFAEISTEPGP 483 A GL + E F ++ P ++ S +R Q A + E Sbjct: 552 EFAEFAGAMGLQLPKGEP-GPGWFGQVLALAAGTPREYIVSSLLLRSLQQ-ARYAPENVG 609 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV-------------- 529 HFGL Y +TSPIR+Y D++ HR+L + E + + + V Sbjct: 610 HFGLAATHYTHFTSPIRRYPDLMVHRILARLTAAEGGGKKRQKQPVGAQGLAPAADLATA 669 Query: 530 --QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD---NG 584 +++ R R+ AER+ + L A ++ DK G + F A + IS GM V LV+ +G Sbjct: 670 GLELSRRERVAVDAERNATERLVALYMADKVGEE--FDAVVSGISSFGMFVELVEIMISG 727 Query: 585 AIAF 588 A+A Sbjct: 728 AVAL 731 >UniRef50_B9KCI4 Ribonuclease R n=9 Tax=Epsilonproteobacteria RepID=B9KCI4_CAMLR Length = 646 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 143/466 (30%), Positives = 228/466 (48%), Gaps = 50/466 (10%) Query: 147 LTQYITFGDDHFVPWWVTLARHN--------LEKEAP---DGVATEMLDEGLVREDLTAL 195 +T+ I DD FV ++LA +N E EA D V M R+DL L Sbjct: 165 ITEVIGHIDDDFVDEKISLALYNKNSIFDTLCENEAKAYGDKVDVSMYPS---RKDLRNL 221 Query: 196 DFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLP 255 +F TID +D DDA+F ++ + VAIAD +A++ S +DK A+ R F+ Y P Sbjct: 222 NFCTIDPIDAKDFDDAIF---YDKNEHVIYVAIADVSAYVHAYSAIDKEARSRGFSIYFP 278 Query: 256 GFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQ 315 IPMLPR LS+++CSL+ NE R +++L + + E F A I SK + YD+ Sbjct: 279 HIAIPMLPRALSENICSLKPNEDRLAFCFKISLDQNNEVIKE-ELFEAIINSKRRFNYDE 337 Query: 316 VSDWLENTGD-----WQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 V ++L+ D W E I + +R + R +A FK + + R L E Sbjct: 338 VDEYLQTQEDLGAINWLYEVFKITQNLR----------KKRLKNACEFKTQ-ELRMTLDE 386 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 +++ E ++ ++E+ M+ AN AA++ + G++ H+ D D L A Sbjct: 387 NNKLIKTRLENDTASHNLIEDCMLLANKAAAKL----IDIGVFRNHLSPDYKKIDQLLAD 442 Query: 431 LKTHGLHVDAEE--VLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLG 488 L T + ++ + + L EL+ + +D I + Q AE S+E HFGLG Sbjct: 443 LSTLSIDINPKNNVIELFKDIQVLANELNIREE--VDKLIIKAQKKAEYSSENAGHFGLG 500 Query: 489 LEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMA--ERRRLNRMAER--- 543 + Y +TSPIR+Y D+I HRLLKA I + + +Q E L R A++ Sbjct: 501 FDKYTHFTSPIRRYSDLILHRLLKAKINHDEKMFNYLLLNIQSTCEELSLLEREADKVSW 560 Query: 544 DVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + D +AR+ K+ G RF A +++ ++ ++V+L D+ A I Sbjct: 561 NFMDRKFARWAKENIG--KRFKAIVIE-NQSSLQVKLDDDIKGALI 603 >UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=B9XG02_9BACT Length = 740 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 170/638 (26%), Positives = 277/638 (43%), Gaps = 49/638 (7%) Query: 24 GVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIA---VIHSEKERESAEPE-- 76 G ++ +G GFLE D K + +P + DR++ V + + R E E Sbjct: 68 GRIRINRQGKGFLEADDPKLPTIVVPEHATGTAFNNDRVLVRRDVRYRGRSRIFQEEETG 127 Query: 77 ---ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 ++E T+ VG Q N L ++PD P + I R + GD V E++ Sbjct: 128 KVIRILERERTQLVGTFQSSNRFLYVIPDDPRIPHDIYVTEPRDVGRRPNLGDKVVVELK 187 Query: 134 RHPLKGDRSFY--AELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE------MLDE 185 L R E+ + + D+ V L ++NL P V E +DE Sbjct: 188 ---LWESRELNPEGEIIEVLGAPDEEGVDMLSVLRQYNLPLHFPKTVLQEAHAIGNQIDE 244 Query: 186 GLV--REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 + RED A VTID +D DDA+ +A P+ +L V IAD + ++ GS LD+ Sbjct: 245 RDIAGREDCRAHTVVTIDPVDAKDFDDAICLEAAPNGHWKLWVHIADVSHYVKVGSALDE 304 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A+ R + YL IPMLP LS++LCSL+ R LSA+G + + F+ A Sbjct: 305 EAQKRGNSTYLVDRVIPMLPEALSNELCSLKPGVERLTKCVEFLLSAEGKVIRS-RFYPA 363 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I SK + Y++V + L+ + I E + + QR R + D P+ Sbjct: 364 VIHSKRRFTYEEVLEALQRK-----PAGPIEEMLHHANTMAQRLRRARMQAGSLDLDFPE 418 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + L E+G++L I I+++++EE M+ AN A L +Y +H D Sbjct: 419 SKIRLDEQGKILRIDRVENDISHQLIEEYMLLANEAVAGKLMALDRQTVYRIHEPPDDKR 478 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP------TGFLDSRIRRFQSFAEI 477 + +H + + KL ++L++ P GFL S +R A Sbjct: 479 LQEFREDVLSH--QIQCGNLTNRHEVQKLLQKLNSLPIGPALKIGFLKSLMR-----ARY 531 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRL 537 + EP H+GL Y +TSPIR+Y D++ HR L + + A + +++ R Sbjct: 532 AVEPLGHYGLAKAKYTHFTSPIRRYADLVVHRSLFQKGREKVAAESLRNVAEHISDTERN 591 Query: 538 NRMAERDVGDWLYARFLKDK--AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 + AERD D +L+ + +G R+ + D+ G V + G +P L Sbjct: 592 SADAERDSKDVKLFAYLQSQLDSGRPQRYPGLVTDVRNFGFFVDVPGLGMSGVVP---LS 648 Query: 596 AVRDELVC--SQENGTVQIKGETVYKVTDVIDVTIAEV 631 + D+ S N + + V+K+ D ++V I +V Sbjct: 649 TLPDDFFQFDSNRNQLIGRRSRRVFKLGDKVEVQIHKV 686 >UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W7V2_9FIRM Length = 700 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 167/665 (25%), Positives = 300/665 (45%), Gaps = 47/665 (7%) Query: 3 QDNPLLAQLKQQLH---SQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHG 57 +DN + K+++H ++ G + + G+GF D + K FI + + Sbjct: 47 KDNEIKISSKKKIHPLSTEDKSLIGQINLAQGGYGFFISDNKDFKDVFISANNLNTANNL 106 Query: 58 DRI-IAVIHSEKERESAEPE--ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 DR+ I +I +++ ++AE + E++E + VG Q ++ D + I Sbjct: 107 DRVRIKIIKNKEFGKNAEGKVVEIIERNSNKIVGLYQKNKGFGFVISDSNNITSDIYVDE 166 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 + K D + E+ +P KG S ++ + + D+ V + H L++ Sbjct: 167 KNS--KKAKSNDKVLVEIINYPKKG--SPEGKVIEVLGNKDEANVDLISIVKSHGLKENF 222 Query: 175 PDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 V E L + REDL L VTID ++D DDA+ + +D + L V Sbjct: 223 SKKVKKEAVFIEKDVDLSKVKNREDLRDLFTVTIDGRDSKDFDDAISIEKDNEDYI-LYV 281 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ E S++DK A R + YL +PMLP ELS+ +CSL NE R L+ +M Sbjct: 282 HIADVSHYVKEKSEIDKEAYQRGNSTYLYNLVLPMLPEELSNGICSLNPNENRLSLSLKM 341 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL---LAQI 343 ++ G + D + + A I S +LVYD V+D+L+ + E + E++ L L +I Sbjct: 342 KINDKGKVID-YKIYKALIRSNYRLVYDDVNDYLDYNKKVY-DDEVLLEKLDLFNDLYKI 399 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 +++ E R + F + + + +G+VL+I R AN+++EE M+ +N A + Sbjct: 400 LKKKREKRGSIDFNFTES---QIDVSNQGDVLNISLFERGSANKMIEEFMLVSNETIASL 456 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF 463 IY +H ++ +L T G ++ +E+ D L++ Sbjct: 457 FAFMDFPSIYRIHEKPKEEKVESFKNILNTLGYNIKGKELHPKDFQDILKQIKGKDDESL 516 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 ++ + R A+ + HFGL + Y +T+PIR+Y D+I HRL+K I + + Sbjct: 517 INMLMLRTMRKAKYTNYRDMHFGLATKYYTHFTAPIRRYPDLIVHRLVKDFIDNKLESIN 576 Query: 524 QDEITVQMAE-------RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 Q + ++++ R + ERDV D +++K G RF I I+ G+ Sbjct: 577 QTSLEKKLSKFAEHLSITERNSEDCERDVEDLYKCKYMKKFIG--ERFEGIISSITDFGI 634 Query: 577 RVRLVDNGAIAFI---PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 V L + F+ + D+L C + I YK+ + + + V + Sbjct: 635 FVELENTVEGCFMYKFSDSHFEYIEDKLSC------INIDKNKRYKIGQKVMIEVKNVDL 688 Query: 634 ETRSI 638 + R+I Sbjct: 689 DKRNI 693 >UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFK4_9NEIS Length = 964 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 135/468 (28%), Positives = 224/468 (47%), Gaps = 19/468 (4%) Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV--ATE 181 EG VAE+ +P + R A +T+ + D + + L +H L E G A Sbjct: 213 EGQVVVAEITAYP-ENHRPAVARITEVLGDYADSGMEIEIALRKHKLPHEFSAGCLKAAA 271 Query: 182 MLDEGL------VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 + E + R DL L VTID ++ D DDA+FA+ + + +L+VAIAD + ++ Sbjct: 272 KIPEKVRASDRKNRVDLRDLPLVTIDGETSRDFDDAVFAEKIGRN-YRLVVAIADVSHYV 330 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 +D+ A+ RA + Y P IPMLP LS+ +CSL + R + C + ++ G I+ Sbjct: 331 KPDDAIDQDAQERATSVYFPRRVIPMLPENLSNGICSLNPDVERLCMVCDIEITFAGNIK 390 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + F+ A ++S +L Y+QV +W+ Q +EQ+ L ++ + + RH Sbjct: 391 -SYRFYPAVMKSHGRLTYNQVWEWIS-----QKTQNPYSEQLNTLYKLFKILQKKRHARG 444 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + + + + + + G++ I+ R A++++EE M+AAN+CAA L +Y Sbjct: 445 AMEFETSETQMLFNDNGKIDRIIPVVRNDAHKLIEECMLAANVCAADFLLKNKHPALYRN 504 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLDSRIRRFQSF 474 H G P AL L GL + + T + L ++ + L + + R Sbjct: 505 HAGPTPEKLAALREQLGLLGLKLGGGDNPTPKDYAALADQIAERDDRELLQTMLLRSMQQ 564 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAER 534 A+ HFGL E Y +TSPIR+Y D++ HR +KAV+ G + + Sbjct: 565 AQYEPHNAGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLAGTQYQADWQALGAHSSHC 624 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 R A RDV +WL +++DK G FA +I ++ G+ V L D Sbjct: 625 ERRADDASRDVENWLKTYYMRDKVG--EVFAGKISGMANFGIFVTLDD 670 >UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7NCL8_LEPBD Length = 761 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 151/527 (28%), Positives = 241/527 (45%), Gaps = 37/527 (7%) Query: 11 LKQQLHSQTPRAEGVVKA----TEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS 66 LK+ P EG VK + FGFL+++ + S FIP + M+GD ++ I Sbjct: 99 LKRNGRYTLPEKEGFVKGEISISSGNFGFLDINGEASVFIPGAYLNTAMNGDTVLVRILK 158 Query: 67 EKERESAEPEELVEPFLTRFVGKVQG---KNDRLAIVPDHPLLKDA-IPCRAARGLNHEF 122 + + + E V + R + G N V KD IP + RG Sbjct: 159 QSSDGTKKREGEVYKVIKRNRNVIVGVFENNLSFGFVRPRNSPKDIYIPKKLIRGA---- 214 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVT--LARHNLEKEAPDGVAT 180 K GD ++ GD E G ++ L +E++ P+ V Sbjct: 215 KTGDLVAVKV---DFWGDEERKPEGAIVSILGSPKDTEALISSLLLNEGIEEKFPNEVLQ 271 Query: 181 EM--LDEGLV-----REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 E+ +DE + R+DL LD +TID + +D+DDA++ + +D +L V+IAD + Sbjct: 272 ELDKIDEDISDELKNRKDLRHLDIITIDGSDAKDLDDAVYVEK-TEDGYKLFVSIADVSY 330 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ E ++LD A R + YL IPMLPR+LS++LCSL NE + M L G Sbjct: 331 YVRENTELDMDALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDKRGK 390 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR------- 346 + N +F+ + I+SK ++ Y+ V+ LE + + E + + ++ R + ++ + Sbjct: 391 VVKN-DFYKSVIKSKYRMTYENVNTILEKNEESE-EYKVLYDKYRKIDEMLKNMLELSKI 448 Query: 347 -RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 R + ++ F + P+ + +L E V DIV R A RI+E+ M+ AN A L Sbjct: 449 IRNNKKRRGSIDF-ELPEIKVVLDENKAVKDIVLRSRGEAERIIEDFMVIANETVAEKLF 507 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLD 465 + IY VH D A AL L G + E + F + P G+L Sbjct: 508 WEEIPAIYRVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERTTGLPEGYLI 567 Query: 466 SR-IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL 511 + I R A + + HFGL + Y +TSPIR+Y D+I HR+L Sbjct: 568 HKLILRAMQRARYANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRML 614 >UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_CLOCE Length = 788 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 173/654 (26%), Positives = 290/654 (44%), Gaps = 64/654 (9%) Query: 24 GVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEP 81 G ++ E+G+GFL D + + FIP + MH DR++A ++ + + E++ Sbjct: 74 GRIQGHERGYGFLIPDDELMEDVFIPADSLNGAMHNDRVVARVNKKSSSDRKMEGEIIRI 133 Query: 82 FL---TRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 T VG + +VPD+ + I ++ H K+G V E+ ++P + Sbjct: 134 LKRANTTLVGTFENSMSFGFVVPDNKRISGDIFV--SKSEFHGAKKGQKVVVEILKYP-E 190 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV----------ATEMLDEGLV 188 R+ + + I ++ V + +NLE++ P+ V TE + +G Sbjct: 191 ARRNAEGRVIEIIGDRNETGVDILSIIKSYNLEEDFPEDVLNQANSIGDTVTEEMIQG-- 248 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L VTID +D+DDA+ + L + +L V IAD T ++ E S LD A R Sbjct: 249 RRDLRGLRMVTIDGEDAKDLDDAVSIETLENGNYRLGVHIADVTNYVTENSPLDLEALDR 308 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL IPMLPR+LS+ +CSL + R + + + +G N E F + I Sbjct: 309 GTSVYLVDRVIPMLPRKLSNGICSLNPHVDRLSFSVMIDIDKNGKAY-NHEIFESVINID 367 Query: 309 AKLVYDQVSDWLENTGD--WQPESEAIA--EQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 ++ Y V LE + S ++ ++++ LA I +++ R + D + Sbjct: 368 ERMTYTNVYKILEENDQELIKRYSHVVSDFQKMKELALILRKK---RFQRGAIDFDFDEA 424 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYNVHMGFDPAN 423 R ++ EKG+ +D+ IAN+I+EE M+A N A F +Y +H D Sbjct: 425 RVVIDEKGKPIDVKRYEITIANQIIEEFMLACNETVAEHFFWTNTPF-VYRIHEDPDEEK 483 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLR----RELDAQPTGFLDSRI------RRFQS 473 L L G ++ G K+ ++L + G RI R Q Sbjct: 484 IHNLNEFLYNLG--------YSIKGINKIHPRALQDLLEKVKGTRHERIISTAMLRSLQK 535 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-------E 526 A S E HFGL + Y +TSPIR+Y D+I HR++K +KG + + E Sbjct: 536 -ARYSNESTGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKLYLKGGMSEEKINHLEGILPE 594 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 I Q +ER R AER+ D ++K G F I +++ GM + L DN Sbjct: 595 IAKQCSERERAADEAERESEDLKKVEYMKAHEG--EIFEGIIANVTSFGMFIEL-DNTIE 651 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSI 638 + + ++ D+ E+ + T +Y++ D + V +A+ + R I Sbjct: 652 GLVR---MSSMEDDYYNYNESHYCLVGERTRKIYRIGDSVKVILAKADVAARKI 702 >UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VX0_SOLUE Length = 762 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 175/645 (27%), Positives = 271/645 (42%), Gaps = 81/645 (12%) Query: 32 GFGFLEVDAQ-----KSYFIPPPQMKKVMHGDRIIAVIH--SEKERESAEPEELVEPFLT 84 G+GFL D Q FIPP + MHGDR++ I R ++++ Sbjct: 78 GYGFLIADRQIPRVVGDIFIPPDSASQAMHGDRVLVRIARIEPDGRADGNIVKVLKRAHA 137 Query: 85 RFVGKVQGKNDRLAIVPDHPLLK------------------DAIPCRAARGLNHEFKEGD 126 VG+ + +VP L+ D I A + E +G Sbjct: 138 TVVGEFKIGRRGCYVVPHDERLQQWVDIPEGMEFPPAGASVDRIGVTAPKVATVEQLDGM 197 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD---------- 176 E+ + +G+ S + + + DD V + + +H+L + P Sbjct: 198 IVNVEIMEYAGRGE-SPVGRVVEILGHPDDFGVDVEIVIRKHHLPHQFPPEVIEQAQAIP 256 Query: 177 GVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 GV EG R D +D VTID + D DDA++ LP L V IAD + ++ Sbjct: 257 GVIPPAEFEG--RRDFRGMDIVTIDGETARDFDDAVWVDKLPSGNYVLHVHIADVSHYVR 314 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 G+ +D+ A +R + Y P +PMLP ELS +LCSL E R VL+ M + G + Sbjct: 315 PGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSLVPLEDRLVLSALMEIDHRGEVVR 374 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 EF I S A++ Y V LE + + + + L+ ++ R Sbjct: 375 Q-EFTEGVIRSVARMTYTNVHKLLEGDQVLRERYKPLVPRFELMQELALVLNRKRVRRGS 433 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + D P+ + G ++ + PR IANR++EE M+AAN A L + IY +H Sbjct: 434 IDFDLPEPLIEFDDLGAMIGVTRAPRNIANRLIEEFMLAANESVAGHLENAGIASIYRIH 493 Query: 417 MGFDPANADALAALLKTHG--LHVDAEEVLTL-------DGFCKLR-------------- 453 DP + G L V A EV DG K + Sbjct: 494 EKPDPKRVMEFEEVAAHFGVSLGVGAIEVKRFKVTDKRRDGTKKQQAIVLADNTNINSRH 553 Query: 454 -RELDAQPTGFLDSRIRRFQSF-----AEISTEPGPHFGLGLEAYATWTSPIRKYGDMIN 507 ++L A+ G + RI F A STE HF L + Y +TSPIR+Y D+I Sbjct: 554 YQKLVAKIEGKPEERILSFLMLRSLRQARYSTENTGHFALAADTYTHFTSPIRRYPDLIV 613 Query: 508 HRLLKAVIKGETATRPQDEIT-----VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 HRLL+AV+ G+ T + E+ +ERR + AER++ +W +F+ D+ G D Sbjct: 614 HRLLRAVLLGK-PTPDESELGPIADDCSQSERRAAD--AERELVEWKKVKFMADRVGED- 669 Query: 563 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN 607 F A ++ ++ G+ V L + +P + + D+ QEN Sbjct: 670 -FDALVISTTKYGLFVELTNLFIEGLVP---IDTLPDDQYTYQEN 710 >UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID=B0T0I6_CAUSK Length = 777 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 145/444 (32%), Positives = 210/444 (47%), Gaps = 30/444 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVAIADPTAWIAEGSKLDKA 244 R+DL L FVTID D DDA++A PD + VAIAD A++ GS LD+ Sbjct: 273 RDDLRDLPFVTIDPVDARDHDDAVYAHPDPDAGNVGGWIVWVAIADVAAYVRPGSALDRD 332 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A+ + + Y P PMLP LS+ LCSLR E R LA RM DG + + +F Sbjct: 333 AREKGNSVYFPDRVEPMLPETLSNGLCSLREGENRATLAVRMVFDNDGRKKSH-KFVRGL 391 Query: 305 IESKAKLVYDQVSDWLENTG--DWQPESEA---IAEQVRLLAQICQRRGEWRHNHALVFK 359 + S AKL Y+Q ++ D Q +A + +R L + G+ R + + Sbjct: 392 MRSAAKLSYEQAQAAIDGIAPPDGQDGDKAGPLLDPILRPLWAAFRLMGKGRAQRSPLGI 451 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 + + R I+ + GE+ I A++++EE MI AN+CAA L K IY VH Sbjct: 452 ESDERRIII-KDGEIQSITRRASLEAHKLIEEMMIQANVCAAESLEAKRTPLIYRVHDTP 510 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEIS 478 +L L+T + E T F KL + P ++ + R Q A S Sbjct: 511 SQEKVMSLVEFLQTIEVKWSKGEAPTTARFNKLLDDTRESPHAAIINEVVLRTQMQAHYS 570 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHR-LLKAVIKGETATRPQDEITVQ------- 530 ++ HFGL L YA +TSPIR+Y D+I HR L++A+ G+ QD ++ Sbjct: 571 SDNLGHFGLNLARYAHFTSPIRRYADLIVHRALIRALKLGDDGLTDQDISQIKDTAEVIT 630 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 AERR + AERD D A FL D+ G F+ I ++R G+ V+L + GA +P Sbjct: 631 HAERRAM--AAERDATDRYIAAFLSDRVGAT--FSGRITGVTRFGLFVKLDETGADGLVP 686 Query: 591 AP------FLHAVRDELVCSQENG 608 F+H R + + G Sbjct: 687 VSTLGEEYFVHDDRMHALVGERTG 710 >UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3771C Length = 721 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 169/616 (27%), Positives = 282/616 (45%), Gaps = 82/616 (13%) Query: 24 GVVKAT----EKGFGFLEVDAQKSYFIPPPQMKKVMHGDRII-AVIHSEKERESAEPEEL 78 GVV AT + FGF E D YFIP M M DR++ A I S E ++ Sbjct: 84 GVVPATITRLSRTFGFAETDEGIEYFIPGKCMLGAMPNDRVLLADIASRTGEPEGEVVDI 143 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPD-----HPLL--KDAIPCRAARGLNHEFKEGDWAVAE 131 +E + G+++ + +VPD H ++ +++IP F+ GD +AE Sbjct: 144 LEFGSNQLTGRIEFVDGEPYLVPDTAAKNHMIISVRESIP----------FENGDKVLAE 193 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVT--LARHNLEKEAPDGVATEM--LDEGL 187 + +G R ++ + FG + + L H + PD V E + EG Sbjct: 194 I---VYRGRRHAEHKVKIILVFGSSEYAASCASSILMIHGAPTDFPDDVKKEAVKISEGG 250 Query: 188 V-------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 V REDL + TIDSA ++D+DDA+ + + +L V IAD + ++ S+ Sbjct: 251 VQDYSFNNREDLRDMPIFTIDSAESKDLDDAVSVERTKNG-YRLGVHIADVSHYVKGNSE 309 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LDK A R + Y IPMLP+ELS+ +CSL +E R L+ + L ++G + + F Sbjct: 310 LDKEAMRRGTSIYYADKVIPMLPKELSNGICSLNPDENRLTLSAFIDLDSEGNML-SYRF 368 Query: 301 FAATIESKAKLVYDQVSDWL--ENTGDWQPESEAIAEQVRLLAQICQR---RGEWRHNHA 355 + I S+ K VY +++ L E + + + + ++ + + ++ ++ + + E RH Sbjct: 369 CKSVIRSRVKGVYSEINKILAGEESAEIREKYASVRDVLAVMDELADKLIAKKERRHAPE 428 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + + + + I+ E G ++ R + RI+EE M+ AN AA++ R+K +Y + Sbjct: 429 I---ETTESKLIIDENGICCGVLPRERGKSERIIEEFMLTANEAAAKLAREKEIPFVYRI 485 Query: 416 HMGFDPANADALAALLKTHGL----------HVDAEEVLTLDGFCKLRRELDAQPTGFLD 465 H A + L LL GL H AE + + G K ++ Sbjct: 486 HEAPPEAKVENLHELLPKFGLECPHFTEFKPHHAAEILRSAKGTDKFEA---------VN 536 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG---ETATR 522 + R + A+ STEP HFGL LE YA +TSPIR+Y D+ HR++ ++ G + ++ Sbjct: 537 LMVLRSMAKAKYSTEPVGHFGLVLEDYAHFTSPIRRYPDLAIHRIITDILAGYDNKWLSK 596 Query: 523 PQDEITVQMAERRRLNRM----AERDVGDWLYARFLKDKAG----------TDTRFAAEI 568 V AER + ER+ D A ++K G T+ F AE+ Sbjct: 597 RYSGFAVNAAERSSAAEIRAVTIERECEDCYKAEYMKAHIGETFRARISSVTEFGFYAEL 656 Query: 569 VDISRGGMRVRLVDNG 584 + G + +R + G Sbjct: 657 PNTVEGLIHIRTLPEG 672 >UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BNS1_9LACT Length = 775 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 181/683 (26%), Positives = 300/683 (43%), Gaps = 78/683 (11%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRI 60 F NPL LK G +A +KGFGF+ V + + FIP M GD + Sbjct: 62 FGLNPLNQTLK-----------GTYRANDKGFGFVTVVEGEPDIFIPRGDTMSAMDGDEV 110 Query: 61 IAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLA-------------IVPDHPL 105 VI ++ R+ + ++V+ + R +V G R + +V D L Sbjct: 111 ELVITEPADSYRQRSATGKIVQ-IIQRNTTQVVGIYTRFSSETAEDTGYCGEVVVKDKKL 169 Query: 106 LKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRS-FYAELTQYITFGDDHFVPWWVT 164 R GL+ +G + E+ ++ + +RS + + I + D + + Sbjct: 170 AGTRCLIRP-NGLHP--VDGTVVIVELTKYTNEKNRSSLEGIVVKEIGYKDAVGMDILMV 226 Query: 165 LARHNLEKEAPDGVATE--MLDEGLV------REDLTALDFVTIDSASTEDMDDALFAKA 216 L + ++ E P V + ++ E + R+DL VTID A +D+DDA+ Sbjct: 227 LQQLHIPTEFPQEVIDQANLVPEVITDEDRQGRKDLRGQLTVTIDGADAKDLDDAVALTK 286 Query: 217 LPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 276 D +L V+IAD + ++ E S +D+ A R + YL +PMLP+ LS+ +CSL + Sbjct: 287 REDGTFELTVSIADVSYYVTENSAIDREAFERGTSVYLTDRVVPMLPQRLSNGICSLHPH 346 Query: 277 EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTG-DWQPESEAIAE 335 E R ++CRM + GTI E F + I S +L Y V++ E + Q E + + Sbjct: 347 EERLTMSCRMEIDRSGTIY-QYEIFPSVIRSDMRLTYSLVNELYEKKEVEIQDEIQQMLL 405 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 ++ L I +RR + R A+ F+ + + I+ E+G +DI R +A R++E M+A Sbjct: 406 DMKELHHILERRRKER--GAIDFETH-EAKIIVDEQGAPIDIQIRERGVAERLIESFMLA 462 Query: 396 AN-ICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC--KL 452 AN A R + F IY VH + G+++ T D KL Sbjct: 463 ANETVAMHYQRKNVPF-IYRVHEQPQQEKMQRFLEFVTAFGINIKG----TSDTISPKKL 517 Query: 453 RRELDAQP----TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH 508 ++ LD + + + R A+ P H+GL E Y +TSPIR+Y D+I H Sbjct: 518 QKALDEVKGETYEAVVSTMMLRSMKQAKYDIIPSGHYGLAAEDYTHFTSPIRRYPDLIVH 577 Query: 509 RLLKAVI-KGETATRPQDEITVQMAER--------RRLNRMAERDVGDWLYARFLKDKAG 559 R+++ G ++ Q+E+ ER RL AER+V A F+ DK G Sbjct: 578 RMIRQYEGSGSFLSKQQEELNASKLERIADQSSKMERLAVQAEREVDAMKKAEFMADKIG 637 Query: 560 TDTRFAAEIVDISRGGMRVRLVDNGA----IAFIPAPFLHAVRDELVCSQENGTVQIKGE 615 + F + +++ GM V L + I + + + + LV E V Sbjct: 638 QE--FEGIVSSVTKFGMFVELPNTVEGLVHITHMNQDYFNFIESHLVLIGERTGV----- 690 Query: 616 TVYKVTDVIDVTIAEVRMETRSI 638 Y++ D + V + +V +E I Sbjct: 691 -TYRIGDCVKVKLIKVDVEAHEI 712 >UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID=RNR_VIBPA Length = 835 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 156/598 (26%), Positives = 260/598 (43%), Gaps = 52/598 (8%) Query: 23 EGVVKATEKGFGFL----EVDAQKSYFIPPPQMKKVMHGDRIIA--VIHSEKERESAEPE 76 +G V + G G++ V +P QMK ++HGD ++ +S++ R Sbjct: 90 KGYVIGHKDGHGWVRPEGSVGKDDDILLPHHQMKNIIHGDFVLVQPTDNSKRGRREGRLV 149 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD--AIPCRAARGLNHEFKEGDWAVAEMRR 134 ++E ++ VG+ + +VPD + IP G + G+ V E+ Sbjct: 150 RVLEERNSQIVGRFFLEYGYSYVVPDDSRISQDILIPNEHKAGA----RMGNVVVIEITD 205 Query: 135 HPLKGDRSFYAELTQYITFGDDHFVPWW---VTLARHNLEKEAPDGVATEMLDEG----- 186 +G RS + + + ++ P + + H + E P+ V ++++ G Sbjct: 206 ---RGSRS-RGMMGKVVEVLGENMAPGMETQIAIRTHQIPYEWPEAVEKQIVNLGEEVPE 261 Query: 187 ---LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 + R DL L VTID D DDA+F + D +L VAIAD + ++ S LDK Sbjct: 262 EAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRLWVAIADVSYYVRPDSALDK 321 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A R + Y P +PMLP LS+ LCSL R + C MT+S G + + + + A Sbjct: 322 EAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTISESGKL-SSYKHYEA 380 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 + S A+L Y +VS LE + + + + + L + + E R + + + Sbjct: 381 VMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAMYKVLKEARDQRGAIEFETVE 440 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 +FI + ++ I R A++I+EE MI ANI +A ++ +Y +H Sbjct: 441 TKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASLVEKAKEPALYRIHESPGELR 500 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPG 482 L GL + + + L R++ Q + + + R A + + Sbjct: 501 LQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQELIQTMLLRSMKQAVYNADNA 560 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEIT-------------- 528 HFGL L+ YA +TSPIR+Y D++ HR +K +I E R QD T Sbjct: 561 GHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEG-RNQDRWTPTGGYHYSFDDMDF 619 Query: 529 ----VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 M ERR + A R+V DWL +++D G + I +++ G VRL D Sbjct: 620 YGEQCSMTERRADD--ATREVADWLKCEYMQDHVGDE--LEGVIANVTSFGFFVRLTD 673 >UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni RepID=D0J279_COMTE Length = 882 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 168/621 (27%), Positives = 268/621 (43%), Gaps = 80/621 (12%) Query: 24 GVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVI--HSEKERESAEPEELVE 80 G V+ G GF+ D ++ ++PP +M+ V+H D++ I H + R E+VE Sbjct: 21 GTVQGHRDGHGFVVRDDGERDIYLPPNEMRAVLHKDKVQVRIARHDHRGRPEGRVVEIVE 80 Query: 81 ----PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 P + RF+ Q L D +D + A G K G V E+ P Sbjct: 81 RPDQPIIGRFL---QESGVWLVAPEDKRYGQDVLIPSNATGAA---KPGQVVVVELTEAP 134 Query: 137 LKGDRSFYAELTQYITFGDD-----------HFVPWWVTLARHNLEKEAPDGVATEMLDE 185 + +T+ + DD + VP + A K P+ V Sbjct: 135 ALFGQPV-GRITEVLGEVDDPGMEIEIAVRKYGVPHIFSDACLEQAKALPEKVRPADYKH 193 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALF---AKALPDDKLQLIVAIADPTAWIAEGSKLD 242 R DLT + VTID D DDA++ AK +L+VAIAD + ++ GS +D Sbjct: 194 ---RIDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRSKGWRLLVAIADVSHYVTTGSAID 250 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A RA + Y P IPMLP +LS+ LCSL + R + C M ++A G I +F+ Sbjct: 251 VDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLITAQGEIH-AYQFYP 309 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ---ICQRRGEWRHNHALVFK 359 A + S A+ Y +V+ L NT PE+ E+V+ L + Q + R V Sbjct: 310 AVMHSHARFTYTEVAAILANT--RGPEAAKRKERVQDLLNLYGVFQSLLKAREARGAVDF 367 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 + + + + + G + IV R A++++EEAM+AAN+C+A + G++ VH Sbjct: 368 ETTETQIVCDDNGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIDQSGQLGLFRVHDKP 427 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEIS 478 + L LK G+ + E + F ++ +P + + + + R A + Sbjct: 428 SLEKQEILRNYLKAMGVSMSISENPSTKEFQQIANATKDRPDSQQIHTMLLRSMMQAFYT 487 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ----DEITVQMAER 534 E HFGL EAY +TSPIR+Y D++ HR++KA + G P E +MA+R Sbjct: 488 PEGSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAELNGTHYKLPSLPTPGEAEAKMAKR 547 Query: 535 -----------------------------------RRLNRMAERDVGDWLYARFLKDKAG 559 RR + A RDV WL +++++ G Sbjct: 548 LSSRVVEPGQKPRKRSAAKEFQAWEAAGLHCSANERRADE-ASRDVEAWLKCKYMREHLG 606 Query: 560 TDTRFAAEIVDISRGGMRVRL 580 + FA + ++ G+ V L Sbjct: 607 EE--FAGTVSSVTTFGVFVTL 625 >UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=A1AWH7_RUTMC Length = 705 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 161/640 (25%), Positives = 288/640 (45%), Gaps = 41/640 (6%) Query: 24 GVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPF 82 G V A KGFGF+ +D K + QM+ V HGDR+ + +R + ++++ Sbjct: 84 GTVIANPKGFGFITLDKGGKDLRLSSKQMQLVFHGDRV--KVRLLNQRGDTQIIKVIKSI 141 Query: 83 LTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRS 142 T VG++ + D +V D +K I + +N E + + ++ + P + Sbjct: 142 ET-VVGRLHLEKDGAYVVVDDKRIKHNI---SISKINREHLDEQIVIVKITKSPTLKSLA 197 Query: 143 FYAELTQYITFGDDHFVPWWVTLARHNL----------EKEAPDGVATEMLDEGLVREDL 192 E+ Q + D V L R+ + + + + T+ +G R D+ Sbjct: 198 V-GEIVQILGSYMDEGVETDSALYRNGIPVDFSPEALIQTDKLPSIVTDSDKKG--RIDI 254 Query: 193 TALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTN 252 T + VTID + D DDA++A+ +L+V+IAD + ++ EG LDK A R + Sbjct: 255 TKMKLVTIDDEDSRDFDDAVYAQT-TSKGWKLVVSIADVSHYVKEGLYLDKDATDRGNSV 313 Query: 253 YLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLV 312 Y P +PMLP LS+ LCS+ + R + C M + G + D +F+ A + S A+L Sbjct: 314 YFPHHVVPMLPEVLSNGLCSINPDVERLCMTCEMNIDTHGNLLD-YKFYPAVMLSHARLT 372 Query: 313 YDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK 371 Y +VS LE+ D + ++ + + L + + + ++ DR + + + + Sbjct: 373 YTKVSQILEHHDVDLTQQYASVMDNLNTLYDLYKALKYAKIKRGVMDFDRIESQILFNDN 432 Query: 372 GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALL 431 G++ +I+A R A++++EE M+ AN +A+ L +Y +H + L Sbjct: 433 GKIDNIIARSRNDAHKLIEECMLMANQASAKFLNHHNEDFLYRIHPKPTVEKVEVTRQFL 492 Query: 432 KTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAEISTEPGPHFGLGLE 490 GL ++ F K+ + + + + R A + HFGL E Sbjct: 493 TAIGLTLEGGTQPDSKDFAKVLASAKGRDDETIIKTVVLRTMKQAVYTPVNEGHFGLAFE 552 Query: 491 AYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEITVQMAERRRLNRMAERDVGDW 548 Y +TSPIR+Y D++ HR +K V+ K ++ EI ++ R A RDV W Sbjct: 553 NYTHFTSPIRRYPDLLVHRAIKRVLDKKSRKPSKKMLEIGAHLSMTERRADDASRDVEQW 612 Query: 549 LYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD---NGAIAFIPAPFLHAVRDELVCSQ 605 L +++DK G F I ++ G+ + L D G IA + + D++ Sbjct: 613 LKCEYMRDKIG--NTFNGVISGVASFGIFIELTDVFVEGMIAIRDMKDDYYIFDDI---- 666 Query: 606 ENGTVQIKGE---TVYKVTDVIDVTIAEVRMETRSIIARP 642 Q+KGE +Y++ + I + +A V ++ R + P Sbjct: 667 ---HHQLKGERTGKIYQLGNTIKIQVASVNLDDRQMAFVP 703 >UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=A7HAA8_ANADF Length = 910 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 165/561 (29%), Positives = 252/561 (44%), Gaps = 42/561 (7%) Query: 24 GVVKATEKGFGFLEVDAQKS--YFIPPPQMKKVMHGDRI-IAVIHSEKERESAEPEELVE 80 G +K G+GF+ +K F+PP + + + GD + + ++ + R + E++E Sbjct: 99 GTLKKHRDGYGFVARIDRKGDDVFVPPGEAAQALDGDLVRVEIVPARGGRTAGRLVEVIE 158 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGD 140 +G + R +VP L +A+P ++GD V ++ P G Sbjct: 159 RRRRLLIGTYHARGARSFVVPADEELGEAVPVPE----TAAAQDGD--VVKVALEP--GT 210 Query: 141 RSFYAELTQYITF-GDDHFVPWWVTLARH---------NLEKEA-PDGVATEMLDEGLVR 189 + + I G+ V A+ E EA PD V E + R Sbjct: 211 ARLQGAVVEAIGRPGEPRVEVLKVAYAKGFADVFPEPVRAEAEATPDRVRPE---DRQGR 267 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDK--LQLIVAIADPTAWIAEGSKLDKAAKI 247 DLTAL VTID D DDA+ + L K +L+VAIAD ++ G+ LD A Sbjct: 268 RDLTALPLVTIDGEDARDFDDAVHVERLEGRKGLYRLVVAIADVAHYVRPGAALDAEAGR 327 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + Y P +PMLP LS+ +CSL + R + + + G + E + + S Sbjct: 328 RGTSVYFPMQVLPMLPERLSNGICSLNPDVDRLCMVADLVVDEHGETR-SAEVYEGVMRS 386 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 A+ Y +V++ + G P + E+ L+A++ ++ R + D P+ + + Sbjct: 387 AARCTYTEVANVV--AGQSVPGRDRFRERFLLMAELQEKLTAMRGRRGALDFDLPEAKIV 444 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 LGE GEV+ I PR A+RIVEE M+AAN AR + IY +H D A Sbjct: 445 LGEGGEVVAIEKRPRNRAHRIVEEFMLAANEAVARWFGSRELPTIYRIHDVPDEEKLQAF 504 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKL--RRELDAQPTGFLDSRIRRFQSFAEISTEPGPHF 485 L ++HG V EV L R + AQ L+ + R A +TE H+ Sbjct: 505 LDLAESHGFEVP--EVPGPRALNALLGRFQGHAQQRA-LNQLLLRAMMQAVYATENIGHY 561 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLK---AVIKGETATRPQDEITVQMA----ERRRLN 538 GL + Y +TSPIR+Y D++ HRLLK A +G+ P +MA ER R Sbjct: 562 GLAAQHYLHFTSPIRRYPDLVVHRLLKEEWARRQGQPVREPSPAALAEMAAVSSERERAA 621 Query: 539 RMAERDVGDWLYARFLKDKAG 559 AERD+ + A F+KDK G Sbjct: 622 MEAERDIAAFYAALFMKDKVG 642 >UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM3_9FIRM Length = 755 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 174/644 (27%), Positives = 292/644 (45%), Gaps = 54/644 (8%) Query: 21 RAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELV 79 +AEG KGFGF+E++ Q + FIP MH D++ +I ++K +E E +V Sbjct: 109 QAEGTFIGHPKGFGFVEIEGQDEDIFIPESDTGTAMHQDKVRIIIRNDK-KEGKRQEGVV 167 Query: 80 EPFLTR----FVGKVQGKNDRLAIVPDHP-LLKDA-IPCRAARGLNHEFKEGDWAVAEMR 133 L R VG Q D ++ D+P KD IP + A G+ K GD + + Sbjct: 168 VKVLERGMPEIVGTYQLNRDFGFVISDNPKFSKDIFIPRKEAAGI----KNGDKVIVVIT 223 Query: 134 RHPLKGDRSFYAELTQYI----TFGDDHF-------VPWWVTLARHNLEKEAPDGVATEM 182 + G+++ ++ + + T G D +P + PD V Sbjct: 224 DYG-SGNKNPEGKIKENLGNIRTPGTDILAIVKSFGIPSEFPEKVMKQAQRVPDHVLDAD 282 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 D L DL L VTID +D+DDA+ + D L V IAD + ++ S LD Sbjct: 283 RDGRL---DLRHLQTVTIDGEDAKDLDDAI-SLTKEGDIYHLGVHIADVSNYVQYNSALD 338 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A R + YL +PMLP LS+ +CSL E R L+C M ++ G + + + Sbjct: 339 REALKRGTSVYLADRVVPMLPERLSNGICSLNQGEDRLALSCLMDINEKGKVVSH-QIAE 397 Query: 303 ATIESKAKLVYDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 I ++ Y V + LE+T + + EA+ ++ ++ RH+ + D Sbjct: 398 TVINVNERMCYTDVKNILEDTDEEAKKRYEALIPMFFMMKELSGILRNSRHHRGSIDFDF 457 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYNVHMGFD 420 P+ + IL G+ +D+ +A +I+E+ M+ AN A +++ F +Y H D Sbjct: 458 PESKIILNAAGKAIDVKPYEANVATKIIEDFMLMANETVAQEYCTEEIPF-VYRTHDNPD 516 Query: 421 PANADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEIS 478 P ++L LL G+ + A+E +T ++ ++ P + SR + R A+ + Sbjct: 517 PEKVESLLTLLHNQGVKIQKAKEEITPKEIQQIIESIEGLPNEAMISRLVLRSMKQAKYT 576 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG--------ETATRPQDEITVQ 530 TE HFGL + Y +TSPIR+Y D+ HR++K ++G E DE+ Q Sbjct: 577 TECSGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKDNLRGRLMREGRTEHYAEILDEVARQ 636 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 + R AER+ A ++ G + F I ++ G+ V L N + Sbjct: 637 SSVCERRADEAERESDKLKKAEYMSYHLGEE--FEGIISGVTGWGLYVEL-PNTVEGLV- 692 Query: 591 APFLHAVRDE-LVCSQENGTVQIKGE---TVYKVTDVIDVTIAE 630 ++ +RD+ + QE T +++GE VYK+ D + V +A+ Sbjct: 693 --HVNTLRDDYYIFDQE--TYELRGEMTKKVYKLGDKVCVRVAD 732 >UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37_ANAPD Length = 708 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 156/584 (26%), Positives = 258/584 (44%), Gaps = 42/584 (7%) Query: 24 GVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRI-IAVIHSEKERESAEPE--EL 78 G + + G+GF D + + FI M K + DR+ I +I +++ AE E+ Sbjct: 71 GKISMAQAGYGFFISDNRDFEDVFIKRDNMNKAHNNDRVKIELIKRKEKGRKAEGRVIEI 130 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 +E VG Q ++PD + I A ++ K D V E+ +P Sbjct: 131 IERAKDEIVGSFQKNKGFGFVIPDDRSYGEDIFI--AEKFFNKAKNKDKVVVEIINYPKD 188 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV---------- 188 G + + I +D + + H L P + E E L Sbjct: 189 GKPE--GRIKEIIGGKNDKNIEILSLIRAHGL----PYQFSKETKKESLYVKDTVNEIEL 242 Query: 189 --REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 R+DL L VTID ++D DDA+ + + L V IAD ++ +G+ +D A Sbjct: 243 EGRKDLRDLFTVTIDGRDSKDFDDAISIEK-NGENYDLYVHIADVAHYVKKGTAIDNDAY 301 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 R + YL IPMLP LS+ +CSL NE R ++ +MT++ G + DN EF+ + I Sbjct: 302 ERGNSTYLFNIVIPMLPEVLSNGICSLNPNEDRLAISLKMTINDKGKVIDN-EFYESVIN 360 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 S +LVYD V+ +L+ + E E I E++R+ ++ + R + + + + Sbjct: 361 SDHRLVYDDVNAFLDKNDENVYEDELIKEKLRIFDELREILNTMREKRGSIDFNFSESQI 420 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 + E G VL+I R N+++EE M+AAN A + IY +H ++ Sbjct: 421 DVAEDGRVLNISNFERGSGNKMIEEFMLAANETVASLFAYMDFPFIYRIHEKPKEEKIES 480 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPGPHF 485 L T G ++ ++ D F ++ E++ + ++ + R A+ S HF Sbjct: 481 FKKALNTMGYNIRGNDLHPKD-FQQILEEVEGKDVESVINILMLRTMQKAKYSEHRDMHF 539 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEIT---------VQMAERRR 536 GL Y +TSPIR+Y D+I HRL+K I + + Q + + M ERR Sbjct: 540 GLSTSFYTHFTSPIRRYPDLIVHRLVKKFIHNKLTSLNQTSLEKTITNNADHLSMTERRS 599 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + ERDV D L +++ G + F I I+ G+ + L Sbjct: 600 ED--CERDVEDLLKCKYMTRFIGDE--FYGNISAITEFGIFIEL 639 >UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU Length = 779 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 177/660 (26%), Positives = 296/660 (44%), Gaps = 73/660 (11%) Query: 23 EGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKE--RESAEPEEL 78 +G + A KGF FL E + FIPP ++ M+GD ++ ++S+ R+ + Sbjct: 73 KGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQSSGSRQEGTVIRI 132 Query: 79 VEPFLTRFVGK-VQGKNDRLAIVPDHPLLKDA-IPCRAARGLNHEFKEGDWAVAEMRRHP 136 +E + R VG + +N I D + D IP G EG V ++ +P Sbjct: 133 LERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGA----AEGHKVVVKLTSYP 188 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD------GVATEMLDEGLV-- 188 +G + E+ + +D + + +H L E P + +DE + Sbjct: 189 -EGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPDTIDEKDLKD 247 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL VTID A +D+DDA+ L D +L V IAD + ++ E S +DK A R Sbjct: 248 RRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPIDKEALER 307 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL IPM+P LS+ +CSL R L+C MT+++ G + ++ E F + I++ Sbjct: 308 GTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEH-EIFQSVIKTT 366 Query: 309 AKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 ++ Y V+ L ++ + + + E + + + ++ Q + R + V D + + + Sbjct: 367 ERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFKEAKVL 426 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 + ++G V D+V R +A +++EE M+ AN A IY +H + NA+ L Sbjct: 427 VDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIH---EEPNAEKL 483 Query: 428 AALLKTHGLHVDAEEVLTLDGFC-----------KLRRELDA---QPTGFLDSRIRRFQS 473 L E +T G+ L+ LDA +P + S + +S Sbjct: 484 QKFL----------EFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTV-MLRS 532 Query: 474 FAEISTEPGP--HFGLGLEAYATWTSPIRKYGDMINHRLLKA-VIKGETATRPQD----- 525 + +P HFGL E Y +TSPIR+Y D+I HRL++ +I G+ Q+ Sbjct: 533 MKQAKYDPQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAER 592 Query: 526 -----EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 E T M ERR ++ AER+ D A ++ DK G + F I ++ GM V L Sbjct: 593 LPDIAEHTSSM-ERRAVD--AERETDDLKKAEYMLDKIGEE--FDGMISSVTNFGMFVEL 647 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSI 638 N + F+ D+ E I T V+++ D I V + +V + R+I Sbjct: 648 -PNTIEGLVHVSFM---TDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNI 703 >UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria RepID=Q3IK27_PSEHT Length = 749 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 161/632 (25%), Positives = 267/632 (42%), Gaps = 69/632 (10%) Query: 14 QLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIH--SEKER 70 Q+ Q GV+ GFGF+ A +K FI Q+ V GD I+ ++ + +R Sbjct: 77 QVIDQALLVSGVITLHADGFGFVNYSASEKDLFIAKNQLAHVFEGD-IVQILQEAASHKR 135 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 + + +++E T G ++ + +V D+ + + N G + Sbjct: 136 SNNKLIKIIEHKTTHLAGILKRQGTDYVLVADNTKCPQKVQVAQCQLANTSV--GQYVNT 193 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-------APDGVATEML 183 ++ ++P + ++T+ + + + L RH + + E+ Sbjct: 194 KITQYP-TFRHATQVQITEVLGLPHSAGMETKLALRRHGVADSWSKDLLAQASSLGNEVT 252 Query: 184 DE-GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 ++ L R D FVTID +D DDA++ + +L+VAIAD + ++ LD Sbjct: 253 EQDKLARVDYRLFPFVTIDGEDAKDFDDAVYCERTEQGNWRLLVAIADVSHYVKPNDVLD 312 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A+ RA + Y PG +PMLP LS+ LCSL +E R VL C MT+S DG + F Sbjct: 313 IEAQQRATSIYCPGQVVPMLPEALSNGLCSLNPHEDRLVLVCDMTISQDGQVTQ-ANFTE 371 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH-------- 354 I S A+L Y Q + +P S + + L A + + + Sbjct: 372 GLIHSHARLTYTQAHAVIA-----KPHSSSAKQLAELNADVSPLIKNLHYLYLDLSAARK 426 Query: 355 ---ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 A+ F D + + L + ++ I R A+R++EE M+ AN+C A+ L G Sbjct: 427 LRGAIDF-DTQELKLNLNKNQKITSIEPIERNDAHRMIEEFMLCANVCTAQFLDKHQIPG 485 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRR 470 ++ VH G L ALL L + + T + KL + + + + + R Sbjct: 486 LFRVHAGPQQKKLQTLRALLAEKRLQLGGGDKPTPADYNKLLNNISQRSDASVIRTLLLR 545 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI--- 527 QS AE S HFGL +AYA +TSPIR+Y D++ HR ++A I+ + Q I Sbjct: 546 SQSQAEYSANNQGHFGLAYDAYAHFTSPIRRYADLVTHRAIRAKIQAKQQNGLQRAISFL 605 Query: 528 --------------------------TVQM---AERRRLNRMAERDVGDWLYARFLKDKA 558 T+ + A+ R+ N ++ R+V L +++ Sbjct: 606 NVFANKASSVSKLAKKAYPYNLESIETLSLHCSAQSRKANDIS-REVESALKCSYMEKYL 664 Query: 559 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 G DT F A I +S G V L G +P Sbjct: 665 G-DT-FTATISGVSSAGFFVELDCTGVEGLVP 694 >UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6A7_MYCS5 Length = 735 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 162/647 (25%), Positives = 287/647 (44%), Gaps = 52/647 (8%) Query: 21 RAEGVVK-ATEKGFGFLEVDAQ----KSYFIPPPQMKKVMHGDRIIAVI---HSEKE--- 69 + G++K A++K F FLE + + +S F+ + ++ D +IA I H+EK Sbjct: 66 KQSGIIKVASKKQFAFLEFENEAQEKESVFVKFQDLNSALNNDEVIASIYKDHNEKNPTR 125 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 + A +E+V+ + +G ++ + + P D + L+ + K D + Sbjct: 126 QLLAVVDEIVQRNNQKIIGFIKKDKNTIFFAPADGCF-DKVKFELL-NLSSKVKINDCVL 183 Query: 130 AEMRRHPLKGDRSFYA-ELTQYITFGDD--HFVPWWVTLARHNLEKEAPDGVATEML--- 183 E++++ D++ + E+ + IT D FV ++ +LE A ++++ Sbjct: 184 CEIKKY----DKNLVSLEIKKVITNTSDPNVFVKAYLESTNIDLEFSAETLAESKLIPQE 239 Query: 184 -----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 E R++LT+ VTID ST+D DDA+ K L + L V IAD ++ E Sbjct: 240 VDLNIKEKFQRKNLTSELIVTIDGESTKDFDDAINVKKLENGNFLLSVHIADVAHYVKEK 299 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 + LD A R + Y+ IPMLP ELS+ +CS+ N R L+C + + G N Sbjct: 300 TNLDSEALKRGTSIYIANGVIPMLPSELSNGICSINPNVDRFALSCDIEIDQHGN-NVNY 358 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDW----QPESEAIAEQVRLLAQICQRR---GEWR 351 + + + I SK +L Y QV + + ++ Q +S + E +L + +++ Sbjct: 359 KIYKSVINSKFRLTYKQVQAFFDKDNNFLSLEQKKSSYVKELETMLTNAYELSLILHKYK 418 Query: 352 HNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 V + P+ + L E G V +I R + ++E+ M+ N A+ L D Sbjct: 419 EAQGYVDFEIPEPKIFLNEDGTVKEIKIHKRVYSEILIEDFMVRTNEVVAKYLSDLKMPV 478 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLT--LDGFCKLRRELDAQPTG-FLDSRI 468 +Y +H +L L G+++ +T + F K + Q F++ Sbjct: 479 LYRIHENPSEEKLQSLKTNLTALGINIKNINSITSSANDFSKFVYQTRNQRNDYFINLLF 538 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEIT 528 R A S HFGL E Y +TSPIR+Y D++ HR+L ++G+++ + Sbjct: 539 LRTMQKAIYSLNNIGHFGLASEFYCHFTSPIRRYPDLLVHRILTMHLEGKSSQEILNHFD 598 Query: 529 VQMAERRRLNRMA-------ERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 ++ +LN + ER V D +A FLK + G +F A+IV + G+ V Sbjct: 599 SKLDSYAQLNSNSEQKAIEIERKVNDLKFAEFLKFQTG--QKFKAQIVSVLNFGIFVEFE 656 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 G+ + F + + E TV YK+ + +DV I Sbjct: 657 FGGSGLIHKSNFFDGSYE----ANEMLTVFASETKSYKIGEYVDVVI 699 >UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE7_RHORT Length = 842 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 139/417 (33%), Positives = 194/417 (46%), Gaps = 23/417 (5%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDD------KLQLIVAIADPTAWIAEGSKLD 242 REDL A+ VTID D DDA+FA+ PDD + +VAIAD ++ G+ LD Sbjct: 306 REDLRAVPLVTIDGEDARDFDDAVFAE--PDDDPANPGGWRALVAIADVAHYVRIGAALD 363 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 KAA+ R + Y P +PMLP LS+ CSLR NE R LA M A+G + F Sbjct: 364 KAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNEDRGCLAVWMIFDAEGN-KLRHRFLR 422 Query: 303 ATIESKAKLVYDQVSDWLENTGD--WQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 + S A+L Y QV + D P E + + L + Q R + D Sbjct: 423 GLMRSAARLTYTQVQAARDGHADDLTAPLQERV---IAPLYGVFQALLGARSRRGTLELD 479 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ + +L + GEV I R +++++EE MIAAN+ AA L +K +Y VH Sbjct: 480 LPERKVVLDDGGEVARIEPRLRFDSHKLIEELMIAANVSAAETLEEKRRPCMYRVHDQPA 539 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEIST 479 P AL L++ + + F + + P ++ + R Q+ AE S Sbjct: 540 PDKLVALGEFLESLDIPFHKGSINRSGQFNGVLKAARGTPHEHMVNEVVLRSQAQAEYSP 599 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-GETATRPQD-----EITVQMAE 533 + HFGL L YA +TSPIR+Y D++ HR L A + G+ RP E + Sbjct: 600 DNIGHFGLALRRYAHFTSPIRRYADLLVHRALIAGLGLGDDGLRPGAEEDFVETAAHITA 659 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 R AERD + FL K G FA I ++R G+ V L D GA IP Sbjct: 660 TERRAAQAERDAVNRYTVSFLAAKVGAT--FAGRINGVTRAGLFVTLEDTGADGLIP 714 >UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH Length = 793 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 179/651 (27%), Positives = 289/651 (44%), Gaps = 52/651 (7%) Query: 22 AEGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEP--EE 77 +G +A E+GFGF+ E FIPP ++K M+GD + A I K AE ++ Sbjct: 72 VKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAEGTIKK 131 Query: 78 LVEPFLTRFVGKVQGKNDRLAIV-PDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 +VE T+ VG IV PD L + GL +G + E+ + Sbjct: 132 IVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKP--VDGHKVIVELTEYA 189 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV------ATEMLDEGLV-- 188 R+ + I +D V + +H + P+ V A +++D+ + Sbjct: 190 TGHARA-RGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDIGN 248 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL +TID A +D+DDA+ LP+ +L V IAD T ++ EGS LD A+ R Sbjct: 249 RRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVEAQER 308 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL IPMLP +LS+ +CSL R ++C M + +G + N E F + I++ Sbjct: 309 GTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVV-NHEIFESIIKTT 367 Query: 309 AKLVYDQVSDWLENTGDWQPESEA----IAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 ++ Y V+D L + E A + E+++ LA+I +R+ E R FK + Sbjct: 368 ERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFK---EA 424 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 R ++ E G +V R ++EE M+AAN A IY +H DP Sbjct: 425 RVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHE--DPKE- 481 Query: 425 DALA---ALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAEIST 479 D LA + GL V + ++ E+ +P + S + R A+ T Sbjct: 482 DKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDT 541 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA-VIKGETATRPQD---------EITV 529 HFGL + Y +TSPIR+Y D+I HRL++ +I G+ RP+ EI Sbjct: 542 VSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGD--VRPETLEKRAEELPEIAE 599 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 ++ R AER+ + F+ DK G RF I ++ G+ + L Sbjct: 600 HSSKMERRAVEAERETDELKKTEFMVDKVG--ERFIGIISSVTNFGLFIEL----PTTIE 653 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSI 638 + A++ + +N I T +Y++ D ++V + +V ++ R I Sbjct: 654 GLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREI 704 >UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9GZQ2_GLUDA Length = 781 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 131/420 (31%), Positives = 191/420 (45%), Gaps = 23/420 (5%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPD-DKLQLIVAIADPTAWIAEGSKLDKAAKI 247 REDL + +TID D DDA++A+ PD D +LIVAIAD ++ GS LD+ A+ Sbjct: 295 REDLRDVPLITIDGEDARDFDDAVYAE--PDGDGFRLIVAIADVAHYVRPGSALDREARR 352 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + Y P +PMLP LS+ CSLR E R L + + A G + F + S Sbjct: 353 RGNSVYFPDRVVPMLPEALSNGWCSLRPGEDRGCLFAEIFIDAAGN-KTRHRFGRGIMRS 411 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 A+L YDQ + N + Q E+ + L + R + D P+ Sbjct: 412 AARLTYDQAQAIVGNVEESQQETGLPDGLINTLFTAWRALSTARARRGTLDLDVPERVVR 471 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 L G + I PR ++R++EE M+ AN+ AA L + +Y +H P A+A+ Sbjct: 472 LDTSGRITAIEPRPRHDSHRLIEEFMVLANVAAAEELERRRRPCLYRIHAPPSPERAEAM 531 Query: 428 AALLKTHGLHVDAEEVL-TLDGFCKLRRELDAQPTG----------FLDSRIRRFQSFAE 476 L G + L D L R + +G + I R QS AE Sbjct: 532 RDSLSAMGFDLPPPGALRARDLGAVLARAAQGEASGPASGTPVSGTLVSETILRAQSQAE 591 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ------DEITVQ 530 S + HFGL L AYA +TSPIR+Y D++ HR L + P DEI Q Sbjct: 592 YSPDNIGHFGLALPAYAHFTSPIRRYADLLVHRALIGMGTQPADGMPAADAACLDEIGEQ 651 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 ++ R +AER+ + A +L D+ G + F+ + ++R G V L GA +P Sbjct: 652 VSTAERRAALAERETTERYVAAWLADRVGAE--FSGHVSGVTRFGAFVTLTQTGATGLVP 709 >UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9_ACIAD Length = 817 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 166/657 (25%), Positives = 284/657 (43%), Gaps = 52/657 (7%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKER 70 K Q + P + V KGFG +D Q +P +++ V +GDR+ V + +R Sbjct: 88 FKFQPIGEQPTFDATVYINNKGFGSAHIDGQNDLLLPERELRLVFNGDRV-KVRQTSVDR 146 Query: 71 ESAE---PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + E+ + + + +GK+ + P P IP + + K G+ Sbjct: 147 KGKAWGFITEVTQHRVKQLIGKLAVHEGEYFLQPSAPNAHQPIPLEKELIEHAQAKVGEN 206 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--- 184 + +P + + S + Q ++ D + T+ L E P+ V + Sbjct: 207 LRVAIDDYPTREEFS-TGHIIQSMSDKADTEIIIPQTILEFGLPYEFPEEVVKDAESFKE 265 Query: 185 ------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 EG R DL L VTID D DDA++A+ +++VAIAD + ++ G Sbjct: 266 PSKKDIEG--RIDLRDLPLVTIDGEDARDFDDAVYAEKRSGGGYRVVVAIADVSHYVRLG 323 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 LD A+ R + Y P F +PMLP LS+ LCSL + R + C + LS G + + Sbjct: 324 KPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLKLSRAGRVM-SY 382 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR-RGEWRHNHALV 357 EF+ + + SKA+L Y QV ++ + D P+ + I + + L Q+ Q +G HA+ Sbjct: 383 EFYPSVMHSKARLTYTQVGNYFDGQTDAIPDDKNIQKSLNTLFQLYQTLKGLRAKRHAME 442 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 F+ Y E G + +I+ R A++++EE M+ AN+ AA +Y VH Sbjct: 443 FETIETY-MTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEFSLQHDIPMLYRVHE 501 Query: 418 GFDPANADALAALLKTHGL-------HVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRR 470 + + + +K GL D + V+ + +DA P+ + + + R Sbjct: 502 APEFSRIQKVKDFVKLLGLPFPDQPTQADYQRVIE-----ATKDRIDA-PS--IHAVLLR 553 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE---TATRPQDEI 527 A + H+GL EAY +TSPIR+Y D++ HR +KA ++ + + D+ Sbjct: 554 SMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLQQKPYPLSGAALDDA 613 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 Q + R A R V WL ++K G + F I ++ G+ V L D Sbjct: 614 GEQFSRTERRADEASRSVTTWLKCHYMKQHLGEE--FIGIISAVTEFGLFVTLKDLYVDG 671 Query: 588 FIPAP------FLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 I FL+ + + Q G ++ + D + + +A V ++ R I Sbjct: 672 MIHVSQLGDDFFLYDQASQSLVGQNRG-------QIFGLGDEVKIKVAAVNLDERKI 721 >UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_VEIPT Length = 764 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 176/666 (26%), Positives = 297/666 (44%), Gaps = 60/666 (9%) Query: 6 PLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI-IAVI 64 P + + + Q H + EG+ K K +GF+ + + ++ MH D++ + ++ Sbjct: 32 PDVYRYEDQQHEE---YEGIYKGYRKSYGFVIMLDDEDIYVAEQNKGTAMHNDKVRVRIV 88 Query: 65 HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLA----IVPDHPLLKDAIPCRAARGLNH 120 S+ + E ++ + R + G DR +VPD + + L+ Sbjct: 89 PSDYTKHKREG--IIVDVIERANETIVGTYDRQQHFGFVVPDDERIGTDVFVDLKNTLDA 146 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV-- 178 + G + ++ + P +G++ +T+ + + D + +A H + P V Sbjct: 147 --RSGAKVLVKITKWP-EGNKKPEGIITEILGYKGDVGLDINCIMANHKIPFAFPKEVIE 203 Query: 179 ATEMLD----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 A+E +D E R DL L VTID +D+DDA+ + LP+ +L V IAD + + Sbjct: 204 ASEKIDTIVHEDPKRWDLRDLQMVTIDGEDAKDLDDAVSGRKLPNGNYELGVHIADVSHY 263 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + G +D A R + YL +PMLP LS+ +CSL A+E R + C M + GT+ Sbjct: 264 VTSGQPIDNEAYKRGTSVYLVDRVVPMLPEVLSNGICSLNAHEDRYAMTCMMEIDDSGTV 323 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLE------NTGDWQPESEAIAEQVRLLAQICQRRG 348 N + I + Y +V LE + D+ P +AE ++L ++ +RRG Sbjct: 324 V-NYRIRPSIIHVGRRCSYKEVYKALEENIIPDDLVDFIPMLRDLAEISKILNRMRRRRG 382 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 AL F D P+Y+ +L G L IV R +A R++EE M+ AN A LRD Sbjct: 383 ------ALDF-DFPEYKVLLDLDGTPLRIVKRDRTMAERLIEECMLIANETVATHLRDTE 435 Query: 409 GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDG-----FCKLRRELDAQPTGF 463 +Y +H D +L G ++ V++ DG F K+ + Q Sbjct: 436 RTSVYRIHENPSEEKLDLFQKVLNYLGQNL----VISADGVTPRDFQKILDVVKGQDIEQ 491 Query: 464 LDSRIRRFQSF--AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGET 519 + ++I +S A+ S E HFGL Y +TSPIR+Y D++ HRLLKA + KG Sbjct: 492 V-AQIMTLRSMQQAKYSIENVGHFGLASTCYTHFTSPIRRYPDLMVHRLLKADMHWKGGY 550 Query: 520 ATRPQDEITVQMAE-----RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 + R DE + A + ++ AER+ D +++ G F I I+ Sbjct: 551 SKRDVDEAFLAGAVEHSSIQEQVATEAERETTDLKKTQYMVPFVG--EVFEGTIASITSF 608 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVR 632 GM V L +NG + ++ D+ E V + T Y + + + VT+ + Sbjct: 609 GMFVEL-ENGIDGLVHISMMN---DDYYFFDEEHFVLVGKRTGKTYHLGEKVTVTLVKAD 664 Query: 633 METRSI 638 +E + I Sbjct: 665 VEKKQI 670 >UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKY3_THEYD Length = 695 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 177/649 (27%), Positives = 290/649 (44%), Gaps = 58/649 (8%) Query: 24 GVVKATEKGFGFLEVDAQKS--YFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEP 81 G +A + GFGF+ D+ K FIPP MHGDR++A + K+RE ++E Sbjct: 68 GFFEAHKNGFGFVIPDSPKETDIFIPPHATMGAMHGDRVVARVEQRKKRE-GRIVRILER 126 Query: 82 FLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH-----P 136 R VG V+ I P + I + + + G +AE+ + P Sbjct: 127 ATRRVVGIVEKSGPIFYIQPRKKNINQQIVIASG---DIKVNPGSLVLAEIVTYQAVNKP 183 Query: 137 L--KGDRSFYAELT-----QYITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLDEGLV 188 L K + F T + +T+ ++ +P + N +E + G++ + Sbjct: 184 LVAKILKVFEKPKTPKEDIEILTY--EYELPKKFSKEVSNFSEELSLKGISKKQFKN--- 238 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L VTID + +D DDA+ K + + + L V IAD + +I S +D A+ R Sbjct: 239 RVDLRELPTVTIDGENAKDFDDAVSIKKIRNGFI-LWVHIADVSHYIKWNSTIDGEARHR 297 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLP IPMLP ELS++LCSL R M S G ++++ F+ + I++ Sbjct: 298 GTSVYLPDRVIPMLPPELSENLCSLLPKIPRLTFTVEMHFSNSGERKESL-FYPSIIQTA 356 Query: 309 AKLVYDQVSDWL-----ENTGDWQ---PESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 ++ Y V L E ++ P E +AE +L ++RG +L F D Sbjct: 357 ERMTYTSVKKILIDKDKEEIKRYKPLVPYFEKMAELCEILKNKRKKRG------SLDF-D 409 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ +L KG+ I+ R +A+ I+EE MIAAN A L +Y VH + Sbjct: 410 LPEPEVLLDIKGDPHAIIKAERNLAHFIIEEFMIAANEAVAEFLYSNNIPSLYRVHEEPE 469 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEIST 479 + ++K G+ ++ L F + + P ++ I R A S+ Sbjct: 470 TNKIQYITRIVKNLGI---LKQDLKPSDFHEFIEIIKGTPYEEIVNYLILRSLKQARYSS 526 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGETATRPQDE-------ITVQM 531 E HFGL E Y +TSPIR+Y D++ HR+LK + KG+ Q E I + Sbjct: 527 ENVGHFGLASECYTHFTSPIRRYPDLVVHRILKEFLQKGKITKERQKELKEILPHIAIHS 586 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 + R ERD + F+KDK G + F + ++ G+RVRL + F+ Sbjct: 587 SRMERRADEVERDAIQIMRVWFMKDKVGEE--FEGRVTMVTPEGLRVRLEEYYIEGFLHL 644 Query: 592 PFLHAVRDELVCSQENGT-VQIKGETVYKVTDVIDVTIAEVRMETRSII 639 H + D ++ + +K + + + ++V +++V +E R II Sbjct: 645 S--HMIDDFYQFDEKRYCLIGLKKKRKFTIGTKLNVRVSKVSLEEREII 691 >UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6WZE5_FLAB3 Length = 718 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 165/598 (27%), Positives = 274/598 (45%), Gaps = 44/598 (7%) Query: 21 RAEGVVKAT----EKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVI-HSEKERESAE 74 + EG V T + G +++V+ FI +K + GD+++ V H + ++ Sbjct: 81 KIEGTVSGTIDFNQAGNAYVKVEEFDDDVFIHSKNVKDALQGDQVLIVTYHFKGKKLEGS 140 Query: 75 PEELVEPFLTRFVGKVQGKN--DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 E+++ FVG Q N D +V D + I +G ++GD V +M Sbjct: 141 VLEVIKRNREEFVGTFQLINHKDFGFVVCDKKTINTDIFV--PKGKIGGAQDGDKVVVKM 198 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL--------EKEAPDGVATEMLD 184 G+++ E+ + + +H LA + L EKEA D T Sbjct: 199 TDWK-SGEKNPEGEIIKVLGAPGEHETEIHSILAEYGLPYSFPAEVEKEADDIDRTIHDS 257 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 E R D+ + TID +D DDAL + L + ++ V IAD + ++ G+ LD Sbjct: 258 EVAKRRDMRGICTFTIDPKDAKDFDDALSIQKLNNGNWEIGVHIADVSHYVQPGTLLDDE 317 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A RA + YL +PMLP LS+D+CSLR NE + + + + + + E+F T Sbjct: 318 AYDRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFEMDENADVVN--EWFGRT 375 Query: 305 -IESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQ-RRGEWRHNHALVFKDR 361 I S + Y++ + +E TGD +AE++ L ++ + R E N A+ F DR Sbjct: 376 VIHSDRRFAYEEAQERIETGTGD-------LAEEILTLDRLAKILRKERIRNGAITF-DR 427 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN------ICAARVLRDKLGFGIYNV 415 + RF L E E + + + + +N ++EE M+ AN I R IY + Sbjct: 428 SEVRFNLDENSEPIGVYFKISKDSNHLIEEFMLLANRKVSEFISLNRKGEPTANTFIYRI 487 Query: 416 HMGFDPANADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQS 473 H DP +AL + T G +D A + +L +++ + +++ R S Sbjct: 488 HDDPDPTKLEALRDFVGTFGYQMDLANTKKVAESLNRLLQDVKGKGEENMIETLAMRSMS 547 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD--EITVQM 531 A ST P H+GLG + Y+ +TSPIR+Y D+I HRLL+ + G + QD E + Sbjct: 548 KAVYSTNPIGHYGLGFDFYSHFTSPIRRYPDLIAHRLLQHYLDGGKSPNKQDYEEKSKHC 607 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + RL AERD ++ +F++ G + F I ++ G V++ +NGA I Sbjct: 608 SAMERLAADAERDSIKFMQVKFMEKHLGEE--FTGVISGVADFGFWVQIPENGAEGLI 663 >UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=A1AN74_PELPD Length = 777 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 181/661 (27%), Positives = 285/661 (43%), Gaps = 54/661 (8%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERESA 73 L S G + + G+GF+ + FIP M+ MHGD + +H+E+ R Sbjct: 60 LASAATSIRGKLSSHRDGYGFVTPQGGGEDIFIPQRHMRGAMHGDTV--EVHAERSRMGG 117 Query: 74 EPEE-----LVEPFLTRFVGKVQGKNDRLAIVPDHPLLK--DAIPCRAARGLNHEFKEGD 126 E +VE ++R VG+ + ++P+ L AIP + RGL ++G Sbjct: 118 GKFEGRITSVVERGVSRVVGRYEETRRGAIVIPEETRLNLVIAIPPKG-RGLA---QDGQ 173 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVA------ 179 V E+ +P+ G R + + + + DD V + R +L APD +A Sbjct: 174 QVVVELSSYPV-GGRPAEGNVVEVLGWPDDPEVEVQSAIRRFDLPHVFAPDTLAEAEAIP 232 Query: 180 -TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 T E R DL L VTID + D DDA+ + D +L V+IAD + ++ Sbjct: 233 ETVPAQELAGRVDLRPLATVTIDGETARDFDDAVSLRR-EGDNFRLWVSIADVSHYVRPD 291 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S LD+ A +R + Y P IPMLP LS+ +CSL R + M DG++ ++ Sbjct: 292 SPLDRDAYLRGTSVYFPDRCIPMLPERLSNGICSLNPGVERLTMTAEMLFDRDGSMLES- 350 Query: 299 EFFAATIESKAKLVYDQVS----DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 F+ I S A+L Y QV D T D + +++ LA I G R Sbjct: 351 SFYPGIIASAARLTYTQVKRVIVDQDRETADSLGTVTPMLLEMKELALILM--GMRRKRG 408 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 ++ F D P+ I+G G IV R +A++++EE M+AAN A + +K +Y Sbjct: 409 SIDF-DLPESEVIIGLTGLTEGIVRAERTLAHQLIEEFMLAANEAVALFIAEKGIPLLYR 467 Query: 415 VHMGFDPANADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQ 472 +H DPA G EE + +L +P ++ + R Sbjct: 468 IHENPDPAKLINFQEFAFGFGYEFPLKEERVNPADLQRLLESAAGRPEERMINYALLRCM 527 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-------------KGET 519 A + E HFGL Y +TSPIR+Y D++ HR+LKA++ + Sbjct: 528 KQARYAAENLHHFGLASRCYCHFTSPIRRYPDLVVHRILKALLALAENRGSKQAEKRLSL 587 Query: 520 ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 AT E+ ++R R+ AERD+ + A+F++ G + F I ++ G V Sbjct: 588 ATHNLSEVGEHTSKRERVAMEAERDIVELKKAQFMQQHLGEE--FDGFITGVTGFGFFVE 645 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQEN--GTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 L + + + + D+L EN V V ++ D V +A V TR Sbjct: 646 LEELFVEGLV---HVSTLDDDLYTFVENRHSLVGRNRGRVLRIGDRARVRVASVSPATRR 702 Query: 638 I 638 I Sbjct: 703 I 703 >UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 Length = 744 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 190/658 (28%), Positives = 288/658 (43%), Gaps = 74/658 (11%) Query: 21 RAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVE 80 R +G + G+GF+ + + F+PP GD + A + P +VE Sbjct: 57 RVQGPLSLHRDGYGFVRL-PEGDLFVPPGYTGDAWPGDLVEARVMPPGR--DGRPWGVVE 113 Query: 81 PFLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 L R VG + + R ++PD P L + +P A GL K G V ++ Sbjct: 114 RVLKRARERLVGTLDFRKGRALLLPDEPNLPE-LPL-APEGLEG-LKRGSRIVVQVH--- 167 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGLVR- 189 G R Y Y+ G+ +A++ L E P+ V E + E +R Sbjct: 168 -YGKRP-YGTFLAYLGEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRR 225 Query: 190 -EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 ED L TID +D DDA+ + LP ++ V IAD + ++ EGS LD+ A +R Sbjct: 226 REDFRGLRVFTIDGVDAKDFDDAIHVERLPGG-YRIGVHIADVSHYVKEGSLLDQEAFLR 284 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLPG +PMLP LS+ +CSLR E R VL+ + L+ D ++ + F I S Sbjct: 285 GTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVK-RVRFREGVIRSV 343 Query: 309 AKLVYDQVSDWLENTGDWQPESEA-IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 A+L Y +V + E G PE A +AE +RLL + QR E R + P+ + Sbjct: 344 ARLTYTEVEAFAEGFG--LPEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFAFPEVKVE 401 Query: 368 LGEKGEV-LDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN--- 423 +GE+GE+ L AEP+ A ++EE M+ AN A L K G++ VH +P Sbjct: 402 VGEEGELHLIPQAEPK--ARSLIEELMLLANRLVAEYLVQKGLPGLFRVHE--EPVQDAY 457 Query: 424 ---ADALAAL-------LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQS 473 ALA L L H L R + +L R R Sbjct: 458 EKLRQALARLGYTLPPKLSGHALQ---------KALLASRGRPEEPVVAYLVLRSLRLAR 508 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT-----RPQD--- 525 +A E HFGL +E Y +TSPIR+Y D++ HR+LKA ++ T T R Q+ Sbjct: 509 YA---PENLGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAALR-RTLTPARKARWQEAFP 564 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 I +E R AER++ + A++ + G RF ++ ++ G V L NG Sbjct: 565 AIAEHASEMERKAEAAERELTKYYMAKWAELHVG--ERFLGKVTGVANFGAFVTL-PNGV 621 Query: 586 IAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L A+ + + KG + ++ D ++V IA R + PV Sbjct: 622 EGLV---RLEALGPYTYSEEAMALLGPKGRRI-RLGDEMEVRIAGANPRLRQVDLLPV 675 >UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Atopobium RepID=C8W8A8_ATOPD Length = 670 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 154/551 (27%), Positives = 252/551 (45%), Gaps = 38/551 (6%) Query: 44 YFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTR----FVGKVQGKNDRLAI 99 Y + + + MHGD + + S K + P V LTR F+G A+ Sbjct: 47 YALAKHGIHEAMHGDEVQVSLVSAKGKA---PLANVRFVLTRATQTFLGIYHDAGPLGAV 103 Query: 100 VP-DHPLLKD--AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDD 156 VP D + +D +P + G ++ F EGD VA + +P + + + + + +D Sbjct: 104 VPLDSRIQRDFFVLPEDPSVGRHYVF-EGDVVVARITEYPTRKSAAVVT-IERRVGSAED 161 Query: 157 HFVPWWVTLARHNLEKEAPDGV----------ATEMLDEGLVREDLTALDFVTIDSASTE 206 + T+A + L E P A + L E R DL +T+D A + Sbjct: 162 LDMNVEATIASYGLATEFPIKALRQAEKISVDADKALAEDASRHDLREELCITVDPADAK 221 Query: 207 DMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPREL 266 D DDA+ A+ L D +L V IAD ++ S +D A++R + YL +PMLP +L Sbjct: 222 DFDDAVGARKLEDGSFELWVHIADVAHYVKWDSPIDLEARMRTCSAYLVDRVLPMLPEKL 281 Query: 267 SDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE----- 321 +D+CSLR E R ++ +M LS+ G I + I S+A+L YDQV +L+ Sbjct: 282 CNDVCSLRPAEDRLAMSVKMKLSSSGKIL-GATAMNSVIRSRARLSYDQVDSYLQGDVSA 340 Query: 322 -NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAE 380 ++ + ++ AI E + +L QI R E R V + + R +L E + + + Sbjct: 341 LDSAVSREDAGAIKEMIDVLNQIRALREEIREKRGSVDFESVETRVVLDENNKPVGVSVR 400 Query: 381 PRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD-ALAALLKTHGLHVD 439 R A ++EEAM+AAN A +L Y VH P + A+ L+ L D Sbjct: 401 ERTQATGLIEEAMLAANESVAHMLSQHDLESAYRVHEQPSPESLKLAITPLVAMGALEPD 460 Query: 440 AEEVLTLDGFCKLRRELDA----QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATW 495 + + L+ L++ + + +++++ R Q A HF LG +AY + Sbjct: 461 VASRIAIGDQTALQEALESVHGTRYSRVVNAQLLRAQKRAIYLPTNQGHFALGADAYCHF 520 Query: 496 TSPIRKYGDMINHRLLKAVIKGETATRPQ----DEITVQMAERRRLNRMAERDVGDWLYA 551 TSPIR+Y D+I HR LK ++ G+TA R + +I +E+ R A R A Sbjct: 521 TSPIRRYPDVIVHRTLKRLLCGQTAARAELSALADICSTCSEQERKADAAARATQKIKLA 580 Query: 552 RFLKDKAGTDT 562 + + + G +T Sbjct: 581 EYYQSRLGEET 591 >UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETS7_AMOA5 Length = 718 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 167/646 (25%), Positives = 280/646 (43%), Gaps = 42/646 (6%) Query: 18 QTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE 76 + P G V G+ ++ V D Q+ + + + GD + I ++ P Sbjct: 84 KLPYVVGKVDYVNPGYAYVVVGDGQQDVLVRQKDLLYALDGDVVKVAITKQENGTKGHPV 143 Query: 77 ----ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 E++E ++VG VQ + ++P + I R + K D V E+ Sbjct: 144 GRVVEILEQNKNKWVGTVQQQGSVTFVLPISRRMHYDIFVRPENL--KKAKHNDRVVVEL 201 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--------D 184 + P + + G++ V +A NL + P+ V E + Sbjct: 202 VKRPTTSKNPEGRIIEVFGPMGEND-VEIHTIMAEFNLPTQFPENVLAETSAISIDIPKE 260 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 E R+D + +TID +D DDAL K LP+ +++ V IAD + ++ E S +D+ Sbjct: 261 EIAARKDFREVFTITIDPEDAKDFDDALSLKILPNGHIEVGVHIADVSYYVQENSLVDQE 320 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A R + YL IPM+P LS++LCSL+ +E RP + L G++ E+F T Sbjct: 321 AFERGTSVYLVDRTIPMIPERLSNELCSLKPHEDRPAFSAVFELDKQGSLHH--EWFGET 378 Query: 305 -IESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I S +L Y++ + QP + ++ EQ+ L + ++ R + D P Sbjct: 379 VIHSDQRLSYEEAQQAIT-----QP-THSLHEQITTLNNLAKKLRADRFKSGAINFDTPS 432 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANI-CAARVLRDKLG--FGIYNVHMGFD 420 +F L ++G L I+ + ++R++EE M+ AN A V R K G F + V+ D Sbjct: 433 VKFQLDKQGRPLSILPKVSEDSHRLIEEFMLLANKRVALHVRRMKQGKQFPTF-VYRTHD 491 Query: 421 PANADAL---AALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAE 476 N + L A +K G + AE L L +P + + R + A Sbjct: 492 QPNLERLGDFALFVKQFGYSIKAEPQEIAQSINVLSEGLAGKPEAHIIQTLAIRLMAKAL 551 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP--QDEITVQMAER 534 +TE PHFGL E Y +TSPIR+Y D++ HRLLK +KGE ++ +ER Sbjct: 552 YTTEAKPHFGLAFEHYTHFTSPIRRYPDLLVHRLLKKYLKGEFYFEEAIYEKKCQHASER 611 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R+ AER + ++ G R I + G+ V L+D I L Sbjct: 612 ERVAADAERASIKYKQVELMQTLQG--KRLKGVISSLMEWGIYVELLDILCEGMIR---L 666 Query: 595 HAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + D+ + G V + + VY++ D+++V I + R++ Sbjct: 667 SDLTDDYYVLDKKGFKLVGERTKKVYQLGDLVEVEIKACDISKRTV 712 >UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN Length = 863 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 171/649 (26%), Positives = 293/649 (45%), Gaps = 47/649 (7%) Query: 24 GVVKATEKGFGFLEVDA------------QKSYFIPPPQMKKVMHGDRIIAVIH--SEKE 69 G ++ GFGF+ DA Q+ +IP + HGD+++A Sbjct: 72 GRLQVHPAGFGFVIPDALAPDQARLPPPEQRDLYIPKEFLGGAWHGDQVLAYPQPPGRDR 131 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R + +++E ++ G+++ + ++PD P L + GL ++G Sbjct: 132 RPWGKVAQVLERSRSKLTGRLEFRRGYAWVLPDDPRLPGKVKLEP-EGLAG-LEQGARIA 189 Query: 130 AEMRRHPLKGDRS--FYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVA-TEMLDE 185 E+ P GD+ YA +Y+ DD + H+L+ E P+ +A E + E Sbjct: 190 VELH-FPQTGDKGGEIYATFLEYLGMADDPQSETRAVIVNHDLKSEFDPEALAEAEAIPE 248 Query: 186 GLV------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + R D +L+ TID +D DDA+ + L ++ ++ V IAD + ++ EGS Sbjct: 249 SIPPEEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYRIGVHIADVSHYVREGS 308 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LDK A R + YLPG +PMLP +LS+ +CSL + R VL+ + ++ G + + Sbjct: 309 ALDKEAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLSVLVEITDGGRVLRH-S 367 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 F I SKA+L Y QV + E G E + + + LL ++ ++ R + Sbjct: 368 FREGVIRSKARLTYTQVQAFAEGKG-MPDEFKWLEPDLALLLELTRKLKAKRVAAGALDF 426 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 + + +GE GE+ ++ + A ++EE M+ AN A+ L DK +Y VH Sbjct: 427 HFTEVKVDIGEAGEI-HLIPQTEPDARSLIEELMLLANRIVAKYLSDKGLPALYRVHE-- 483 Query: 420 DPANA--DALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAE 476 DP + LAA L G + E + + ++++ +P + + + R A Sbjct: 484 DPTDMAYAKLAAQLSKLGYELPGMEP-SPKAMQAILKQVEGKPEAPMVSTLLLRSLKLAR 542 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD---EITVQMAE 533 + E HFGL E Y +TSPIR+Y D+I HR+LK +++ + E+ +MAE Sbjct: 543 YAHENLGHFGLAAEHYLHFTSPIRRYPDLIVHRVLKTLMRRRLTPEKVEHWREVFPRMAE 602 Query: 534 ----RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 R R AERD+ + + + G RF + ++ G+ V L +NG + Sbjct: 603 HTSSRERSAEAAERDLTKYYQCCWAELHKG--ERFGGVVSGVTGFGVFVAL-ENGVEGMV 659 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L E V + V + + ++ D ++V I V + TR I Sbjct: 660 RLSSLLDDHYEYV-EETLSLVGTRTKRRIRIGDPLEVVIQGVNLPTRQI 707 >UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLT1_MOOTA Length = 770 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 178/647 (27%), Positives = 286/647 (44%), Gaps = 48/647 (7%) Query: 24 GVVKATEKGFGF---LEVDAQKSYFIPPPQMKKVMHGDRIIAVI--HSEKERESAEPEEL 78 G ++A+ +G+ F L+ D + Y I + MHGD ++A + + R+ E + Sbjct: 67 GRLQASPRGYAFVVPLDKDREDLY-IGALNINGAMHGDLVLARVLPGTTGRRQEGEIIRV 125 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 ++ R VG + ++PD L I A G + E ++ D V E+ R P + Sbjct: 126 LQRVNKRVVGTFDATRNLDFVIPDDARLHQDIIIPA--GASLEARDRDKVVVEITRWP-E 182 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGLV--RE 190 RS + Q + V + ++ LE E P V E L+ G + R Sbjct: 183 ARRSPEGRVIQVLGQTGAPGVDVLSIIKKYGLETEFPPEVIREAEEIPRDLEPGELAKRR 242 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL VTID A D+DDA+ + PD L V IAD + ++ EG LD+ A R Sbjct: 243 DLRDWRLVTIDGADARDLDDAVSLERRPDGSYLLGVHIADVSFYVREGRPLDREAFNRGT 302 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + Y IPMLP LS+D+CSL A E R + MT+S GT++D E F + I + + Sbjct: 303 SVYFVDRVIPMLPARLSNDICSLNAGEDRLAITALMTISPAGTVKD-YELFPSVIRVRER 361 Query: 311 LVYDQVSDWLENTGDWQPE----SEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 + YD V LE D PE + +L+A++ R + D P+ + Sbjct: 362 MTYDDVRRILE---DKDPELMERYRELVPDFQLMARLAAILRRRRRRRGAIDFDFPEAKV 418 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 L ++G + I+ R +A I+EE MI AN AR L + +Y VH P +A Sbjct: 419 KLDDQGLPVAIIPRHRTVAEGIIEEFMIVANEVVARHLYELAVPAVYRVHEEPAPDKLEA 478 Query: 427 LAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAEISTEPGP 483 L L GLH+ + E + F ++ + +P + S + R A + + Sbjct: 479 LNTFLAYFGLHIKPNREGRVRPRAFQEILAAVKGRPEERVISTVMLRSMMHARYAGDCLG 538 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK--GETATRPQD------EITVQMAERR 535 HFGL Y +TSPIR+Y D++ HR+L+ G +A R VQ +ER Sbjct: 539 HFGLASPYYCHFTSPIRRYPDLVVHRILRETWSPAGFSAERMAQLSAFVALAAVQASERE 598 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA----IAFIPA 591 +L AER+ D ++++ G FA I + G V L + ++ + Sbjct: 599 KLAEEAERESLDMKKVQYMERHVGAT--FAGVISGVVPYGFFVELENTVEGLVHVSTLTD 656 Query: 592 PFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + H D+L E+ G++ Y++ + V + V ++ R + Sbjct: 657 DYYHYQEDQLALVGEH-----TGKS-YRIGQPVTVLVTRVSVDARQV 697 >UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR_THEMA Length = 710 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 151/518 (29%), Positives = 243/518 (46%), Gaps = 25/518 (4%) Query: 24 GVVKATEKGF-GFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE-KERESAEPEELVEP 81 G ++ T G+ F+ D + +P K MH DR++ I + ++E Sbjct: 72 GTIEFTRSGYVAFVITDDFEEIAVPVEDTKYAMHKDRVVVEITGTWRGLPRGRVVRVLER 131 Query: 82 FLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDR 141 L R VG K +VPD P K A A K +AE+ ++P G + Sbjct: 132 GLKRVVGVFDHKGTFGFVVPDDP--KIAYDFYVAPENIDGAKPNQKVIAEILKYPSPG-K 188 Query: 142 SFYAELTQYITFGDDHFVPWWVTLARHNLEK--EAPDGVATE-------MLDEGLV-RED 191 + A++ + + DD + + +H+L + E P+ V E + + LV R+D Sbjct: 189 NPEAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREANAIPARVRKKDLVGRKD 248 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 L VTID +D DDA+ + LP+ L V IAD + ++ EGS LD+ A R + Sbjct: 249 LRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTS 308 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 YL IPMLP LS+ +CSL + R ++ M + DG + + + + I+SK ++ Sbjct: 309 VYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVV-RYDVYPSVIKSKKRM 367 Query: 312 VYDQVSDWLENTG---DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 +Y++V+++LE+ +++P + I V LA+I R R A++ + + + IL Sbjct: 368 IYERVNEFLEDPSSMKEYEPFKDLIYNAVE-LAEIL--REARRKRGAILDIESDEVKVIL 424 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG-IYNVHMGFDPANADAL 427 E G+V+DIV R IA +++EE MI AN A + D G +Y VH DP L Sbjct: 425 DENGQVVDIVPRKRGIAEKLIEEFMIRANETVAEIF-DHAGLPFMYRVHEEPDPETIFQL 483 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPGPHFG 486 L+ G+ + KL ++ P ++ + R A S HFG Sbjct: 484 KNYLEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAVNIGHFG 543 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 L AY +TSPIR+Y D++ HRLLK ++ P+ Sbjct: 544 LASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPE 581 >UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1D4N8_MYXXD Length = 1182 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 166/598 (27%), Positives = 264/598 (44%), Gaps = 65/598 (10%) Query: 23 EGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVE 80 EG++ GFGF+ + + + F+PP + ++ + DR++ + R +V+ Sbjct: 170 EGILHVHRDGFGFVHPLSGEGDNVFLPPHEAQRALDNDRVVVAVSGRPPRLEGRIVRVVQ 229 Query: 81 PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR--RHPLK 138 VG K + P L P R L +EGD ++ L Sbjct: 230 RRRELAVGTYVVKGRYAVVYPTDSSLPG--PIRVP--LTQMAREGDLVKVQLGIGAQMLD 285 Query: 139 GDRSFYAELT----------------QYITFGDDHFVPWWVTLA-RHNLEKEAPDGVATE 181 DR + E+ Y D F P + A R+ + TE Sbjct: 286 PDRGLHGEVAGSLGKPGTPSAEVLGVAYSQGFSDEFPPEVMAEADRYAV-------TVTE 338 Query: 182 MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 G R DL A+ +TID D DDA+ + D +L+VAIAD T ++ EGS L Sbjct: 339 EEVRGEHRRDLRAIPLITIDGEDARDFDDAVCVEDR-ADGWRLVVAIADVTHYVWEGSAL 397 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 + A RA + YLP +PMLP LS+ +CSLR +E R + MT G + + + Sbjct: 398 NAEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMTFDRRGH-RRSYDLY 456 Query: 302 AATIESKAKLVYDQVSDWLE-----NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 A + S A+ Y++V D L+ + +P E + R L ++ + RG A+ Sbjct: 457 PAVMRSVARCTYNEVQDVLDGKDVPHRNAHKPHFERLMSLARALMKMRKERG------AI 510 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 F D P+++ +L E G + R+ ++R++EE M+AAN A +++ +Y H Sbjct: 511 DF-DLPEHKVVLDEDGLPARMDKRERKDSHRLIEECMLAANEAVATFFQNEGLPTVYRFH 569 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLT---LDGFCKLRRELDAQPTG-FLDSRIRRFQ 472 DP AAL + +G + E+ ++ LD F +L P L+ + R Sbjct: 570 GEPDPEKLATFAALAEAYGFKMRVEDGVSSKELDAFVS---QLQGHPEQRALNQLLLRSM 626 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA--VIKGETAT-----RPQD 525 A ++ H+GL E Y +TSPIR+Y D++ HRLLKA KG + R +D Sbjct: 627 MQAVYTSSRVGHYGLAAEHYLHFTSPIRRYPDLLVHRLLKAHWARKGRKPSQSMLEREED 686 Query: 526 EI---TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 ++ Q +ER R ER+V + +KD+ G + FAA + I+ G V L Sbjct: 687 QLEDMAAQCSERERAAMQVEREVVSFYACLLMKDRVGEE--FAATVAAITDFGFFVEL 742 >UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_NATTJ Length = 709 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 149/592 (25%), Positives = 273/592 (46%), Gaps = 51/592 (8%) Query: 24 GVVKATEKGFGFLEVDAQKS--YFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEP 81 G ++ KG+ FL D S F+ P + +H D+++ IH E E + +PE V Sbjct: 71 GTIQGHPKGYAFLLPDKPGSPDVFLSPKSLNGALHNDKVLVRIHKE-EMLNQKPEGEVVR 129 Query: 82 FLTRFVGKVQG---KNDRLA-IVPDHP-LLKDAIPCRA-ARGLNHEFKEGDWAVAEMRRH 135 ++R + +V G K+DR +VPD +D +A A G K G VA++ Sbjct: 130 IISRGMSEVVGTFDKSDRFGFVVPDDDRFFRDVFINKADANGA----KNGQKVVAQITGW 185 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD----------E 185 P ++ E+ + I D V + ++ L ++ P V ++ + E Sbjct: 186 PDTPAKNPEGEIIKVIGNPSDPGVDIETIINKYGLSEDYPPKVKEQLEEVPNEISPKDYE 245 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 G RE + L VTID + +D+DDA+ + L + ++L V IAD + ++ EG+ LDK A Sbjct: 246 G--RELIQGLPTVTIDGSDAKDLDDAVSLEKLDNGNMELGVHIADVSYYVREGTPLDKEA 303 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 + R + YL +PMLP +LS+++CSL R ++ + L+ +G I N + I Sbjct: 304 RQRGTSVYLVDRVLPMLPPKLSNNICSLNPGVERLTMSAFVELTEEGDIA-NYRLTPSVI 362 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 +S +L Y++V++ + + + + + +A + + I ++ E R + + D+ Sbjct: 363 KSNYRLTYEEVNELFDGSKEIEEKYPDVAWMLFEMKTISEKLRERRFDEGAI-----DFE 417 Query: 366 F-----ILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYNVHMGF 419 F +L ++G+ + R A +++EE M+ AN + A + F IY VH Sbjct: 418 FDEPVVVLDDQGKPESVEKRARGSAEKLIEEFMLLANRVVAEHHYNLDMPF-IYRVHEQP 476 Query: 420 DPANADALAALLKTHGLHV---DAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAE 476 D G ++ + EE+ ++ L D + + + + R A Sbjct: 477 DDEKVSTFREFASKFGYYLPKPEGEEIYPIEFQKVLEEAKDTREERAISTMMLRSMKQAR 536 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ--------DEIT 528 + E HFGL + Y +TSPIR+Y D++ HR+++ +I + + +EI Sbjct: 537 YAAESLGHFGLSFQYYTHFTSPIRRYPDLVVHRIMREIITKKDLKEARQKKLQSKLEEIA 596 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 Q + R + AER+ D+ A +++ G D F + ++ G+ + L Sbjct: 597 YQSSLREQEATEAERESVDYKMAEYMEQFVGDD--FPGIVSSVTSFGIFIEL 646 >UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMX4_9FIRM Length = 697 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 155/600 (25%), Positives = 263/600 (43%), Gaps = 52/600 (8%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 K ++ + +G + T KG F E D FIP ++ H D + I EK Sbjct: 57 KYSIYQKKETLKGKISFTTKGNAFFISEEDID-DIFIPKKELNHANHNDDVEIEIIKEK- 114 Query: 70 RESAEPEELVEPFLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 R +++ E V L R VG + +VPD +K +G + K Sbjct: 115 RMNSKAEGRVLKVLNRNSNLIVGTFTENKNFGFVVPDD--IKCNYDIFIKKGDKNSAKTD 172 Query: 126 DWAVAEMRRHPLK------------GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 D V ++ P K G++ + Q I+ D +P+ + + + KE Sbjct: 173 DKVVCKLVEFPDKKKNPEGVVIEVIGNKK--DKNAQIISLLKDMEIPYKFS---NKINKE 227 Query: 174 APDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + T++ E R D L VTID A +D DDA+ D+ L V IAD + Sbjct: 228 LEELTQTDIKKEIKNRVDFRNLFTVTIDGADAKDFDDAISIDK-KDNDYVLYVHIADVSH 286 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ + SKLD+ A R + YL + +PMLP LS++LCSL N + + +M + +G Sbjct: 287 YVKKDSKLDREAYKRGNSVYLIDYVVPMLPEVLSNNLCSLNPNTDKLSITVKMIIGKNGN 346 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 +++ +F+ + I S +LVYD V+++LE + + E + E + ++ ++ + R N Sbjct: 347 VKE-YKFYESVINSNYRLVYDDVTNFLEGKKHFY-DDETLKENLLVMKELDEILTNKRIN 404 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG-- 411 + + P+ G+ G+V +I + +ANRI+E MI AN + FG Sbjct: 405 RGTIDFNFPEIAITFGKDGKVENIAKKENGLANRIIESFMICANEVVGK------HFGEL 458 Query: 412 ----IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLDS 466 IY +H + L L + + ++++ ++ + D + F++ Sbjct: 459 DIPIIYRIHSKPPEDKLEILKNNLSRLNIKMKPIDMISSKYLSEIIDQFKDTNKSDFINY 518 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE 526 I R + A+ S HFGL Y +TSPIR+Y D+ HR LK + P++ Sbjct: 519 SILRSMTKAKYSPNIDIHFGLATFLYCHFTSPIRRYADLTVHRTLKNYLHSNIEI-PKNY 577 Query: 527 ITVQMAERRRLNRM------AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 I+ +N AER + D F+K+K G F IV ++ G+ V+L Sbjct: 578 ISYLDITSNHINDTEVLAIDAERKLEDIKKVEFMKNKIG--QVFKGIIVSVTSFGLFVQL 635 >UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B076_SYNWW Length = 705 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 162/583 (27%), Positives = 257/583 (44%), Gaps = 34/583 (5%) Query: 22 AEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELV 79 +G++ ++KGFG L D F+ ++ MH DR++ I EK PE V Sbjct: 69 VKGIIHISKKGFGVLVPDKAGLGEVFVYGKKLNGAMHNDRVMVRIQ-EKGYNGQRPEGTV 127 Query: 80 EPFLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 L R VG L +VPD I +A+R + KEGD + + Sbjct: 128 IRILARNTRELVGTFTKGRHLLQVVPDDSRQIYPIYVKASR--KWKAKEGDKVLVRISSW 185 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGL 187 P + D+ ++ + + + V V +H L E PD V E +E Sbjct: 186 PER-DKVAEGKIVEVLGRKGEAGVDLKVLAKKHGLRLEFPDNVMEEARNVAVEVNAEEIS 244 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL VTID +D+DDA+ + +L V IAD + ++ E KLD+ A Sbjct: 245 RRRDLREWRMVTIDGEDAKDLDDAVSIEK-TSKGYKLGVHIADVSHYVKEDCKLDREAFK 303 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + YL +PMLP ELS+++CSL R ++C M + + G + D E + I+ Sbjct: 304 RGTSVYLIDKVLPMLPVELSNNICSLNPQVERLAISCIMDIDSWGQVVD-YEIVKSVIQI 362 Query: 308 KAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 ++ Y V+ L +N + + E L+ ++ R N ++ D P+ + Sbjct: 363 NERMTYSDVNRILADNPPALKERYGELVEDFFLMKELSDILRRSRLNRGMLDFDFPESKV 422 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI-YNVHMGFDPANAD 425 I+ E+G L++ R ++E+ MI AN A L + LG + Y VH D Sbjct: 423 IVDEEGFPLEVKRAERGPGEMLIEDFMIKANEVVAEHLHN-LGLPVLYRVHEKPDEEAIS 481 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS-RIRRFQSFAEISTEPGPH 484 L +L G + +V + F + ++ QP + S I R A EP H Sbjct: 482 ELNKVLAVFGHKIKGHKVSPM-LFQGILADIKGQPEEQMISLMILRSMKHASYLPEPRGH 540 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM---AERRRLNRM- 540 FGL Y +TSPIR+Y D+I HR+L +++ G TR + + +M E+ L M Sbjct: 541 FGLASPYYCHFTSPIRRYPDLIVHRVLSSLLDGGMTTRKKSSLEKKMTIYGEQSSLQEMK 600 Query: 541 ---AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 AER++ D A+++ G + F+A I + G V L Sbjct: 601 AEEAERELLDVKKAQYMSQFVGDE--FSARISSVQAFGFFVAL 641 >UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms RepID=Q11XW5_CYTH3 Length = 750 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 155/573 (27%), Positives = 259/573 (45%), Gaps = 46/573 (8%) Query: 40 AQKSYFIPPPQMKKVMHGDRIIAVIHSE-----KERESAEPE--ELVEPFLTRFVGKVQG 92 A +I +M + GD + ++ + K +SAE E E+VE T FVG+++ Sbjct: 109 ADNDIWISSNKMSGALDGDIVRVAVYKKSGGGNKGTKSAEGEIVEIVERKRTSFVGRIEV 168 Query: 93 KNDRLAIVPDHPLLKDAI--PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQY 150 +VPD + I P G K G+ + ++ P + ++S ++T+ Sbjct: 169 SARHAFVVPDGRKMHVDIFIPKEHINGA----KTGEKVLVDITAWPTRDEKSPTGKVTEV 224 Query: 151 ITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVREDLTALDFVTIDS 202 + ++ LA L E P+ V D E R D+ TID Sbjct: 225 LGMAGENETEMHAILAEFGLPYEFPNQVIKAAQDITAETSEAEIKKRRDMRGTTTFTIDP 284 Query: 203 ASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPML 262 +D DDA+ K L + ++ V IAD + ++ G LDK A RA + YL +PML Sbjct: 285 EDAKDFDDAISFKYLDNGNWEIGVHIADVSHYVQPGDTLDKEAYRRATSVYLVDRCVPML 344 Query: 263 PRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT-IESKAKLVYDQVSDWLE 321 P LS++LCSLR NE + + + AD + D E+F T I S + Y+Q + +E Sbjct: 345 PERLSNELCSLRPNEDKLTFSAIFEIDADAKVLD--EWFGRTIIHSTRRFSYEQAQEVIE 402 Query: 322 N-TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAE 380 GD + +++ +L + ++ R + + + +F L KG+ L +V + Sbjct: 403 TQQGD-------LVKELTILNTLAKKMRAQRFKEGAISFETVEVKFQLDAKGKPLAVVPK 455 Query: 381 PRRIANRIVEEAMIAANICAAR-VLRDKLGFG-----IYNVHMGFDPANADALAALLK-- 432 R+ A++++EE M+ AN A V + G G +Y H +P +LA K Sbjct: 456 VRKDAHKLIEEFMLLANKRVAEFVFNLRKGKGTSNTMVYRTHDAPNPEKLASLATFAKRF 515 Query: 433 THGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEA 491 H + +D E + + KL E++ +P L S R S A S EP HFGL + Sbjct: 516 GHKVELDDENAIAKN-LNKLSDEVEGKPEQNVLQSLAIRTMSKAIYSIEPDMHFGLAFKH 574 Query: 492 YATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV--QMAERRRLNRMAERDVGDWL 549 Y+ +TSPIR+Y D++ HRLL+ + G + + I + + +L AER + Sbjct: 575 YSHFTSPIRRYPDVMAHRLLQHYLDGGKSADKEYYIEACEHSSAQEKLAAEAERSSIKFK 634 Query: 550 YARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 F++ G + F + ++ GM V +V+ Sbjct: 635 QVEFMQSSIGKE--FEGIVSGVTEFGMFVEIVE 665 >UniRef50_A6Q7D2 Ribonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q7D2_SULNB Length = 655 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 134/439 (30%), Positives = 213/439 (48%), Gaps = 31/439 (7%) Query: 152 TFG--DDHFVPWWVTLARHNLEKEAPDGVATEML--------DEGLVREDLTALDFVTID 201 FG DD V ++LA +N E P E L +E R DLT LDF TID Sbjct: 168 VFGHLDDPRVDEKISLALYNRHDEFPPQCVEEALQIESEVTKEEHTDRIDLTHLDFCTID 227 Query: 202 SASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPM 261 + +D DDA++ + L VAIAD + ++ +++DK AK R FT YLP + PM Sbjct: 228 PVTAKDFDDAVYFDL---ETYTLYVAIADVSHYVPYFTEIDKEAKKRGFTTYLPHKSFPM 284 Query: 262 LPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE 321 LPRELS+++CSL+ R ++TL + EFF A I S+ + Y+ V ++ Sbjct: 285 LPRELSENICSLKPKVDRLAFVAKITLDQNSLKPLKEEFFEAIIHSRHRFNYEPVDRIID 344 Query: 322 NTG-DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAE 380 G + + + I + L +I QR + R H F+ + + L E+ ++ E Sbjct: 345 TNGKEATGKVKEILHYLLPLYRITQRLRKERLKHGFDFRSE-EIKLTLNEEQLLVSTQIE 403 Query: 381 PRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA 440 ++ ++EE M+ AN +A+ + G I+ +H +AL L GL+V+ Sbjct: 404 TGTPSHSLIEECMLLANQASAKRFKGD-GDSIFRIHELPQLQKIEALLTELAAIGLYVEE 462 Query: 441 EEVLTLDGFCKLRR-ELDAQPTGF---LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWT 496 E D +R + +A G +D+ I + A S+ HFGLG Y+ +T Sbjct: 463 YE----DSPSLIRAIQKEAGKMGLSAEVDAMIIKSLRQASYSSHNVGHFGLGFSHYSHFT 518 Query: 497 SPIRKYGDMINHRLLKAVI-----KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYA 551 SPIR+Y D+I HRL+K + + E R + + V++++ R AE D D +A Sbjct: 519 SPIRRYADLILHRLIKTQLTNNEEEAEYLLRNIEPLCVRVSDLEREATKAEWDFRDRKFA 578 Query: 552 RFLKDKAGTDTRFAAEIVD 570 R+ K + G F AE+++ Sbjct: 579 RWAKTQIG--AFFEAEVIE 595 >UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09B28_STIAU Length = 630 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 168/588 (28%), Positives = 258/588 (43%), Gaps = 46/588 (7%) Query: 17 SQTPR-AEGVVKATEKGFGFLEVDAQKS-----YFIPPPQMKKVMHGDRIIAVIHSEKE- 69 S PR G + +GFGFL V S FIPPP++ + D + A + + Sbjct: 4 SARPRPVTGRIDVHPRGFGFLVVQPPPSGEVLSAFIPPPELASFLADDTVSATVSQGADG 63 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R +A L++ + G+V + + D + P + + GD V Sbjct: 64 RWTASGLSLLQRPREQVYGEVVLRKGTPFLRIDREVASSDWPLETGTAV----QTGDAVV 119 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV-----ATEMLD 184 A + ++G A L + G D V +ARH+L ++ P V A + Sbjct: 120 ARI----VEGK----AVLLHRLEPGVDRSVAR--IIARHDLRRDFPPEVLEEARAVRGVP 169 Query: 185 EGL-VREDLTALDFVTIDSASTEDMDDALFAKALP---DDKLQLIVAIADPTAWIAEGSK 240 L R DL AL VT+D+ ST D+DDA+ LP D L+L+V+IAD ++ EGS Sbjct: 170 HALGARRDLRALPTVTVDAPSTRDIDDAI--SVLPAGEDGALRLLVSIADVAEFVTEGSA 227 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD+AA+ R + YL G +PMLP ELS SL E R L+ + + A+G + + Sbjct: 228 LDRAARERGTSVYLAGHVLPMLPEELSSHWLSLVPGEERRCLSVELRIDAEGHV-TAADV 286 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 + I S A+L YD+V+ +L+ G E + E + R R + Sbjct: 287 SESLIRSWARLNYDEVAAYLDR-GAVSAAMEPVREAMPWFRAASARLAVARAGRGGMELA 345 Query: 361 RPDYRFIL-GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 R + RF G+V I P A++++E M+AAN A + D+ ++ V Sbjct: 346 REEARFTFDAGTGQVSGIENTPPTTAHQLIERFMVAANEAIASWMEDRGLPAVFRVQDEP 405 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD---AQPTGFLDSRIRRFQSFAE 476 D L+A G LT R++ A+P L S +RR FA Sbjct: 406 DRQRVADLSAFAHHSGFEAGFGGRLTPLALAAFDRQITGCAAEPA--LRSVLRRSLGFAR 463 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD----EITVQMA 532 + P HFGL Y +TSPIR+Y D+ HR LK ++G QD ++ V++ Sbjct: 464 YTVVPSGHFGLAARRYLHFTSPIRRYADLAVHRTLKQYLRGRRDFAHQDPAVEQLAVRLN 523 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 R + + AE+D L AR + G + A I + G+ ++L Sbjct: 524 ARAKASSRAEQDRHRVLEARLMASHVGKS--YPARITRVKPFGLLIQL 569 >UniRef50_Q7MQZ6 RIBONUCLEASE n=1 Tax=Wolinella succinogenes RepID=Q7MQZ6_WOLSU Length = 653 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 18/335 (5%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R+D +L F TID +D DDA++ A + L VAIAD + ++ S +DK A++R Sbjct: 215 RQDFRSLPFCTIDPIDAKDHDDAVYFDA---KESILYVAIADVSEYVTPHSPIDKEARVR 271 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 FT YLP +IPMLPR LS+++CSL+ E R ++ L + E A I SK Sbjct: 272 GFTIYLPHKSIPMLPRNLSENICSLKPQEDRLAYVWKIRLHKRTALPLKAELHEAIIRSK 331 Query: 309 AKLVYDQVSDWLE----NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 KL Y++V ++LE N+ + E + + L A+ + R + F + + Sbjct: 332 QKLSYEEVDEFLEEPKANSTILKELQEPL---LNLYARTKKLRAKRLERGYEFFNE--EN 386 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 R ++ E ++ IV+E ++ ++EE M+ ANI +A+ L GI+ VH Sbjct: 387 RLLMDENLNLISIVSEKETPSHSLIEECMLLANIYSAKHLEK----GIFRVHEEPKLEKI 442 Query: 425 DALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQSFAEISTEPGP 483 + L L++ GL +E L +++E +A+ +D I R Q+ A S + Sbjct: 443 EELLWDLRSLGLEAKPKETLHAT-IATIQKEAEAKGIRTEVDRMIIRSQAQARYSHQKIG 501 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 HFGLG E Y+ +TSPIR+Y D++ HRLLKA +KGE Sbjct: 502 HFGLGFEEYSHFTSPIRRYSDLVLHRLLKAELKGE 536 >UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 RepID=C2KYI7_9FIRM Length = 745 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 187/689 (27%), Positives = 303/689 (43%), Gaps = 86/689 (12%) Query: 15 LHSQTPRAE-----GVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSEK 68 L + RAE G A +GFGF+ + + ++ +IP + M GD ++ VI ++K Sbjct: 61 LQGKYSRAESFSQKGTFHANRRGFGFVSLSEKEEDVYIPKGEAGNAMDGD-LVKVILTKK 119 Query: 69 ERESAEPEELVEPFLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR-------- 116 ++ E + L R +G V+ K + L + PD+P L D I R Sbjct: 120 SENGSKAEGKISKVLERANKEVLGLVKEKREGLYLSPDNPKLPDCILISPGRDKGAVPGD 179 Query: 117 ---------GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLAR 167 G + E K + R PL E+ + + DD + + Sbjct: 180 KVVLEILSYGPSKENKAPRGRIPRKRISPLLS--CPVGEVKEILGHKDDPGMDVLSVIRS 237 Query: 168 HNLEKEAPDGVATEMLD----------EGLVREDLTALDFVTIDSASTEDMDDALFAKAL 217 +L +E P+ V E E R+D L +TID +D+DDA+ Sbjct: 238 FSLPEEFPEDVLLEANQLPNAVSPEKAEETGRKDFRKLTTITIDGEDAKDLDDAISLDYF 297 Query: 218 PD-DKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 276 P+ ++ +L V IAD + ++ EGS LD A R + YL IPMLP+ LS+ +CSL Sbjct: 298 PEKEEYRLYVHIADVSDYVKEGSALDLEALERGTSVYLTDRVIPMLPKALSNGICSLHEG 357 Query: 277 EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA-- 334 R L+C M +G + E + I S ++ Y +V+ LE+ +W+ E ++ Sbjct: 358 VDRLCLSCIMDFDREGRPLSH-EITPSIICSNKRMSYHKVTALLEDK-EWEDPEEKLSYL 415 Query: 335 ----------EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRI 384 E RLL + RG AL F D P+ + E G + I AE R Sbjct: 416 PFHELLTKMRELARLLRKSRMARG------ALDF-DFPESKVYFDENGNISKICAEEREE 468 Query: 385 ANRIVEEAMIAANICAAR--VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE 442 +++I+EE M+ AN A RD + F +Y +H D L+ +L + + A++ Sbjct: 469 SHKIIEEFMLIANETVAEEYYWRD-IPF-LYRIHEKPDWEKWQNLSHVLSSFSYSLKAKD 526 Query: 443 VLTL--DGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPI 499 L +L +L +P L S I R A+ STEP HFGL + Y+ +TSPI Sbjct: 527 PDNLRPKALQELLSKLKGKPEEAMLSSMILRSLKQAKYSTEPEGHFGLASKYYSHFTSPI 586 Query: 500 RKYGDMINHRLLKAVI---KGETATRPQDEITVQMAERRRL----NRMAERDVGDWLYAR 552 R+Y D+ HR++K I + E R + I +A + L AERD + Sbjct: 587 RRYPDLQIHRIIKENIAYQENEKRRRHYERILPDVASQSSLRERRAEEAERDCMKLKKCQ 646 Query: 553 FLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI 612 ++K+ G F I +++ G+ V L +N IP F+ D + ++E + + Sbjct: 647 YMKNFLG--EVFPGRISGLTQYGIYVTL-ENSIEGMIPLRFM--TEDYYIFNEEE--ISL 699 Query: 613 KGET---VYKVTDVIDVTIAEVRMETRSI 638 +GE + + D + +++ V +RSI Sbjct: 700 RGEASGKTFHMGDPMWISVYAVDTLSRSI 728 >UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9P5_9FIRM Length = 769 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 174/655 (26%), Positives = 290/655 (44%), Gaps = 53/655 (8%) Query: 20 PRAEGVV----KATEKGFGF---LEVDAQKSYFIPPPQMKKVMHGDRIIAVI--HSEKER 70 PRA G+V + T+KG+GF LE + FIP + M+ D +IA + H R Sbjct: 65 PRAMGLVTGRLQVTQKGYGFVVPLEKTEEGDLFIPAMHLSGAMNEDLVIARVSDHGYGGR 124 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 + ++E RFVG D + PD+ + I R LN + GD V Sbjct: 125 REGKVIRILERAHERFVGTFTRSGDFGFVTPDNRHIGQDIYVRRKDFLN--ARNGDKVVV 182 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV--ATEMLDEGLV 188 ++ P G + +T+ + D + + +L + P V A +++ + + Sbjct: 183 KITVWP-NGRQKAEGTITEILGKKGDVGIDIISIIKDKDLPLDFPKEVKEAAQLVPQVIP 241 Query: 189 REDLTA-LD-----FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 ++DL LD +T+D ++D+DDA++A+ +D L V IAD + ++ +LD Sbjct: 242 KKDLKGRLDRRKWPIITVDGVDSKDLDDAIYAEKRGEDYF-LGVYIADVSHYVRPRGELD 300 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A R + YL +PMLP LS+ +CSL E R ++C M +S + + Sbjct: 301 REAYARGTSVYLVDRVLPMLPPLLSNGICSLNEGEERLTMSCEMVISGKTGKVLSYDIAP 360 Query: 303 ATIESKAKLVYDQVSDWL--------ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 + I S+ ++ Y V+ L E D P E + E +L + RRG Sbjct: 361 SVIASRHRMNYPDVAKILTDRDTALREKYSDIVPMLETMEELCTILHKKRVRRG------ 414 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIY 413 A+ F + P+ + IL EK +D+ R IA ++EE M+AAN AA + + F IY Sbjct: 415 AIEF-EIPEVKVILDEKKRPIDVHLRHRTIAEMMIEEFMLAANETVAAHMTKHHYPF-IY 472 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQ 472 VH D +L+ ++ G + E + R++ +P G + + R Sbjct: 473 RVHDVPDEDRMQSLSKIMAQFGTVLKIEGKMRPKVLQMALRKVKGKPEEGMISTLALRSM 532 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE------ 526 A TE HFGL + Y +TSPIR+Y D++ HRLLK G+ ++ + E Sbjct: 533 KQAVYQTENVGHFGLAAKDYTHFTSPIRRYPDLLVHRLLKEQRTGQKLSKKEKENLNDKL 592 Query: 527 --ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 + + R RL AER+ + ++ G + F I ++ GM V+L +NG Sbjct: 593 SLMASHASTRERLAIEAERETDELKMTEYMLPYVGQE--FDGTISGVTSFGMFVQL-ENG 649 Query: 585 AIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + L + D +E+ V G Y++ + + + V +E R I Sbjct: 650 IEGLVHISSL--LDDYYRYDEEHFALVGEHGGKSYRLGSPVRIKVFHVSVEERKI 702 >UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6T0_9FIRM Length = 704 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 142/514 (27%), Positives = 238/514 (46%), Gaps = 31/514 (6%) Query: 23 EGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEKE---RESAEPEEL 78 EGV + FGF+ V+ + F+ + GD++ + EKE + E+ Sbjct: 74 EGVFEKGRGLFGFVNVEGLDEDIFVVGSESMDAFSGDKVKVEVIKEKEGDRKREGRIVEI 133 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 E + VG + +V D+P + I A G+ + K D V E+ P K Sbjct: 134 TEKVKRQTVGTFYKEKTFGFVVSDNPNFTNDIYIPKA-GIKYA-KNKDKVVVEITDFP-K 190 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-------APDGVATEMLDE-GLVRE 190 +++ ++T+ + D++ V + +++ E D + + D+ R+ Sbjct: 191 DKKNWVGKITKVLGRKDENGVDIEALIYEYDVPYEFSHLALKEADELEFDSFDKFKGKRK 250 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DLT ++ TID + +D+DDA+ + +++ L V IAD + ++ S++DK A R Sbjct: 251 DLTDVNIFTIDGPTAKDLDDAV-SIVKKENEYVLSVHIADVSNYVKRNSEIDKDAYERGT 309 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + Y IPMLP+ L ++LCSL E + + M ++ +G + D F+ + I+SKAK Sbjct: 310 SIYFADRVIPMLPKTLCENLCSLNPKEEKKAFSVDMRINKEGKLLD-YNFYKSIIKSKAK 368 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 VYD+V++ + + D + E E + + ++ + + R+ + D D FI E Sbjct: 369 FVYDEVNELFDGSKDLREEYYTYEEDLNTMKELYELLRQRRYVEGNLDFD-VDENFITVE 427 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN------- 423 G V D+ R IA RI+E+ M+ AN A GIY VH D Sbjct: 428 NGVVTDVSLRERGIAERIIEQFMLVANTSACEFFSSMGLNGIYRVHEEPDKEKLSGFIKF 487 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGP 483 A+AL L+ H H E L+ F K E D F +R + A +TE Sbjct: 488 ANALGYKLRLHDGHYSKE----LEEFLKT-IEGDKNEQLFKTVLLRCMKK-AVYTTENKG 541 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 HF L +E Y +TSPIR+Y D++ HR+L ++ G Sbjct: 542 HFALAIENYTHFTSPIRRYPDLMVHRILSNILLG 575 >UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1J0_DESAD Length = 746 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 133/446 (29%), Positives = 204/446 (45%), Gaps = 34/446 (7%) Query: 155 DDHFVPWWVTLARHNLEKEAP-------DGVATEMLDEGLV-REDLTALDFVTIDSASTE 206 DD V + A H + P D + E ++E RED+ + FVTID A+ + Sbjct: 239 DDAIVQEAIVKANHGIPTAFPGKVLAVADALPDEPVEEDFADREDMRDIPFVTIDGATAK 298 Query: 207 DMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPREL 266 D DDA+F + + +L VAIAD + ++A S LD+ A R + Y P PM P L Sbjct: 299 DFDDAVFVEKIAGG-YRLRVAIADVSHYVAMESPLDREALKRGNSYYFPKSVEPMFPEAL 357 Query: 267 SDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL------ 320 S+ LCSL + R + + G N F A I S+ +L Y+QV + Sbjct: 358 SNGLCSLNPDVNRLAMTATIEFDKSGA-PVNSSFAPAVIRSQGRLTYEQVYQGVILGEKE 416 Query: 321 --ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIV 378 E+ GD P ++L ++ ++ + R+ + D P+ + +G +DI Sbjct: 417 EQESLGDLLP-------MLKLCEELARKINKRRNARGSLEFDLPEPEILFNLQGRTVDIR 469 Query: 379 AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV 438 R A++IVEE MIAAN A L +K +Y VH G D L +L+ G+ Sbjct: 470 PRCRNFAHQIVEEFMIAANEAVAEFLTEKEIGCLYRVHPGPDEEKLTNLFKVLRKIGISK 529 Query: 439 DAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPG--PHFGLGLEAYATWT 496 + +T ++ ++ + ++ SR+ +S + EP HFGL E Y +T Sbjct: 530 QIPDPVTPQTLQEVIKDSEGTDQEYIVSRL-LLRSMKQAKYEPDNEGHFGLASECYCHFT 588 Query: 497 SPIRKYGDMINHRLLKAVIKGETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYAR 552 SPIR+Y D++ HRLLK + E P + I ++ R AER++ L Sbjct: 589 SPIRRYADLVVHRLLKVALGDEHQAIPGQKQLGRIGSAISGTERTAMEAEREILKRLTII 648 Query: 553 FLKDKAGTDTRFAAEIVDISRGGMRV 578 FLKDK G + F I I+ G V Sbjct: 649 FLKDKVGEE--FTGVISSIAEFGFWV 672 >UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea psychrophila RepID=Q6ALZ0_DESPS Length = 721 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 168/651 (25%), Positives = 286/651 (43%), Gaps = 52/651 (7%) Query: 24 GVVKATEKGFGFLE-----VDAQ---KSYFIPPPQMKKVMHGDRIIAVIH--SEKERESA 73 ++ A +GFGFL ++AQ + ++ M + +HGD+++A I ++ R A Sbjct: 91 AILDANPRGFGFLHNMESNIEAQLPLQDPYVSQYNMSQALHGDKVLAYIFRTTQNGRSEA 150 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 E +++ L R G + + +VP+ L + ++ + GD + ++ Sbjct: 151 EIFHVIKRGLNRIAGVIAIDGSKGIVVPEDKRLPFVVQVTIPEDMS--VRHGDGVIVTLK 208 Query: 134 RH--PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA-PDGVATEML------- 183 + P K + E +FG V + R +EK PD + E Sbjct: 209 QTATPDKVRQGMLLE-----SFGSPDSVKSQI---RFVVEKSVLPDKFSGETYAELEQMG 260 Query: 184 --DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 D R DL + FVTID + +D DDA+ + + +L VAIAD + ++ GS L Sbjct: 261 GEDHDPKRVDLRDIKFVTIDGDTAKDFDDAVCVEKRGVN-FRLYVAIADVSHFVKVGSAL 319 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 D+ A R + Y PG IPMLP +LS++LCSL +E R L + + G ++ F Sbjct: 320 DRDAYERGTSVYFPGTVIPMLPEKLSNNLCSLVPDEDRLTLTAILDIDRAGKLQKK-SFC 378 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEA---IAEQVRLLAQICQRRGEWRHNHALVF 358 + I S+ + Y +V + L+ G + +A + ++ LA+I + + R AL F Sbjct: 379 RSLIRSQHRFTYTRVQEILDTPGSVSADEKAFLSMLQEAEKLARILKEKRAIR--GALGF 436 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 P+ +L +GEV ++ + +I+EE M++AN A ++ +Y +H Sbjct: 437 T-MPESIILLDSEGEVENVARSEAHFSQKIIEEFMLSANEAVAEFFTEQGCSALYRIHEK 495 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQSFAEI 477 D A G+ + + + F ++ E F +++ + R A+ Sbjct: 496 PDVDRVKEFATYAHNLGMQLPPPDN-SPAWFGRVIEESKGSEKEFVVNNLLLRSMKQAKY 554 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHR---LLKAVIKGETATRPQDEITVQMAER 534 S + HFGL Y +TSPIR+Y D++ HR L + ET R + ++ R Sbjct: 555 SADNVGHFGLAATDYTHFTSPIRRYPDLMVHRELCRLVGYLPAETKNRSAQQAGDFLSGR 614 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R+ AER++GD L F++ G F A I ++ G V L D A AP Sbjct: 615 ERVATKAERELGDRLKCIFMERYIGET--FKAIISGVTDTGFFVELKDFPISA--SAPIE 670 Query: 595 HAVRDELVCSQ--ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 V D + N Q KG + + D ++VT+ + +I PV Sbjct: 671 ELVEDMYLFDYRGHNLIGQNKG-AFFSLGDSVEVTVQRIDRARNRVIVAPV 720 >UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 RepID=D2MM97_9FIRM Length = 759 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 167/639 (26%), Positives = 277/639 (43%), Gaps = 63/639 (9%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEP 75 SQ EG + G GF++++ + SY I P + M+GD + +I + K A+ Sbjct: 64 QSQAKVIEGRLSVNRMGVGFVDIEDKDSYRIEAPDLATAMNGD--LVLIQALKILPFAKV 121 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLK----------DAIPCRAARGLNHEFKEG 125 + E VG + K ++ + D LK D +P + + H + G Sbjct: 122 IAIKERAKDTVVGTIFTKGKKVYLGLDDERLKERKVRLSYSKDFLPIDGLKVVGHITRYG 181 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD- 184 D PL + + I DD L H + E P+ V E+ Sbjct: 182 D---------PLD------VTVLKVIGHKDDPGTDIASILVDHEIPLEFPEEVLEELKSI 226 Query: 185 -------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 + + R+DL FVTID S++D DDA+ + ++ L V+IAD ++++ E Sbjct: 227 SQEVHPSQFIGRKDLRNQIFVTIDGDSSKDFDDAVSVEK-DENGYHLWVSIADVSSYVQE 285 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 + LD+ A+ R+F+ Y+ +PMLP ELS+ +CSL R L C M +S G I + Sbjct: 286 NTALDQEAQQRSFSTYVVDRVVPMLPHELSNGICSLNPQVDRLTLTCEMQISKQGEIV-S 344 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 + + + I SK ++ Y++V+ L E + +L R + + Sbjct: 345 YDVYPSVICSKRRMTYNKVNQILIGNESVIQEYADMGNFFEVLLDCADAIRHQRVDKGAI 404 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + P+ L E+G+ + I + R +A I+E+ MI AN+ A+ L++ GIY VH Sbjct: 405 NFEHPETGIDLDERGKPIHIYPKQRGVAEEIIEDCMIVANVSVAKYLKEYGIPGIYRVHE 464 Query: 418 GFDPA-----NADALAALL-KTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRF 471 +P+ LA +L K L + + F ++ ++ P L+ + R Sbjct: 465 --EPSAKRLKEYRHLAEILGKPFTLKTSNVQPKDVQQFLTSIQDENSAP--ILNMMMLRT 520 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM 531 A HFGL + Y +TSPIR+Y D+I HR+L + GE + +D + Sbjct: 521 MQKARYDIRDIGHFGLAEQDYLHFTSPIRRYPDLIVHRMLWKYMFGENQKKDKDWDNRRN 580 Query: 532 AERRRLNRMAERDVGDWLY-------ARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN- 583 E + ER+ D Y A +++D G F I ++ G V+L + Sbjct: 581 REFAEHASIQERNCSDAEYACLDMKKAEYMQDHLG--EYFDGIITGVTHFGFFVQLENTV 638 Query: 584 -GAIAF--IPAPF--LHAVRDELVCSQENGTVQIKGETV 617 G + IP + H R ELV + NG V G++V Sbjct: 639 EGLVQTRSIPGDYYLFHEDRSELV-GKRNGVVYRVGQSV 676 >UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_DEIGD Length = 1182 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 166/654 (25%), Positives = 288/654 (44%), Gaps = 53/654 (8%) Query: 24 GVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEK-----------ERE 71 G +A+ GFGF+ DA + +++ P + +GD ++ + +R Sbjct: 323 GRFQASPTGFGFVIPDAGGEDFYVAPEDTLEAWNGDTVLVRMEGRGDSGRSPGPRRGQRG 382 Query: 72 SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR-----GLNHEFKEGD 126 P V + R + G L HP+LK P R G Sbjct: 383 DGSPRASVARIVQRAYRHLVGT---LEFSKGHPILKADDPRARHRILLLPEGLEGLASGA 439 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP-------DGVA 179 VAE+ G+ + ++ + + DD + ++ L E P + + Sbjct: 440 RVVAELYWPEQTGEDEVFGQVIRVLGEQDDPATETEAVIVKYGLRGEFPADVLEEANAIP 499 Query: 180 TEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 T + E LV R DL + T+D +D DDA+ + P+ + V IAD + ++ EG Sbjct: 500 TRIPPESLVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVVGVHIADVSHYVREG 559 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 + LD+ A RA + YLPG +PMLP LS+ +CSL E R + + LSA+G I D + Sbjct: 560 TPLDQEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPFEDRLTVTALIELSAEGDILD-V 618 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWR-HNHALV 357 + + I SKA+L YD+V + E T + + + LL +I + + R +L Sbjct: 619 KLAPSVINSKARLTYDEVQAYSEATSTLPEHARHLEGDLHLLLKITSKLRQKRLREGSLD 678 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 FK R + + +G G ++++ A ++E+ M+ AN A L ++ ++ +H Sbjct: 679 FKLR-EVKVDVGPDGR-MELIPIHEETARGMIEDLMLLANKVVAHYLIERGIPTLFRIHE 736 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAE 476 A + GL E T + + + + P +++ + R A+ Sbjct: 737 EPTLQRFQEATAAIARLGLAFPGGEP-TPQAYQAVLKAVRGTPRESVVNTLLLRSLQQAK 795 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE--TATRPQDEITVQM--- 531 + E HFGL Y +TSPIR+Y D+ HR+LKAV+ G+ +R E+ Q+ Sbjct: 796 YAGENLGHFGLAFAEYLHFTSPIRRYPDLFVHRVLKAVLSGDLKAGSRAVAELRSQLPAM 855 Query: 532 ----AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +ER R AERD+ + A++ ++ G RF+ + + G+ V L DNG Sbjct: 856 GDHTSERERKAAEAERDLTKYYQAKWAQEHLG--ERFSGNVTGVVSSGLFVAL-DNGVEG 912 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGET---VYKVTDVIDVTIAEVRMETRSI 638 + + + D+ E+ + ++G + +++ D I VTI++V R I Sbjct: 913 KL---HISNLDDDYYIYLEDAQM-LRGRSGGRTFRLGDPITVTISQVNPLARQI 962 >UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_CHLTR Length = 694 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 169/596 (28%), Positives = 263/596 (44%), Gaps = 54/596 (9%) Query: 29 TEKGFGFLEVDAQKSY----FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLT 84 + KGFGF+ D + Y FI +K + GD ++ + R + + ++ L+ Sbjct: 27 SRKGFGFVSPDQPELYPFDIFISASDLKGALDGDHVLVAL-PFSLRGGEKRKGVIHKVLS 85 Query: 85 R----FVGKVQGK-NDRLAIV------PDHPLLKDAIPCRAAR-GLNHEFKEGDWAVAEM 132 R VG + N LA+V P+HPL + +P R + G K W Sbjct: 86 RGKTVLVGTIVSLINPTLAMVYVNTIGPEHPLKAELLPKRTYKLGDRLLLKTPVWKENYP 145 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV---ATEMLDEGLV- 188 R P + ++I + + V A ++ +E PD V A++ L + + Sbjct: 146 SREPPP------LAMLEFIGNISNAKTDFPVIKAEFSITEEFPDAVVQEASQFLQKHVTQ 199 Query: 189 ----REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 R+DL L TIDS+S +D DDA+ + L V IAD + ++ S LD+ Sbjct: 200 ALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDRE 259 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A R + Y PG IPMLP LSD+LCSL+ N R ++ MT S +G + D + Sbjct: 260 AAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSD-YRILRSV 318 Query: 305 IESKAKLVYDQVSDWLENTGDWQPESEAI---AEQVRLLAQICQRRGEWRHNHALVFKDR 361 I SK ++ YD+V + +E P S+ I AE R+ + I ++RG R LV Sbjct: 319 IRSKYRMTYDEVDEIIEKK-QTHPISKTILKMAELSRIFSDIREQRGCTR----LVL--- 370 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 P + L E + ++ + A++++EE M+ AN A + + GI +P Sbjct: 371 PSFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQ---GITMPFRTHEP 427 Query: 422 ANADALAALLKT---HGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEI 477 N ++L +T G + D L+ P L S+ R A Sbjct: 428 PNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSMKTASY 487 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRL 537 STE H+GL L+ Y +TSPIR+Y D+I HRLL + E ++I + + R+ Sbjct: 488 STENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEEEHL--EQIVRACSSQERI 545 Query: 538 NRMAERDVGDWLYARFLKD--KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 AE + ARFLK + T + A I+ S G+ L + FIPA Sbjct: 546 AAKAEGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEFCHEGFIPA 601 >UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6VM99_LACPJ Length = 804 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 173/609 (28%), Positives = 271/609 (44%), Gaps = 60/609 (9%) Query: 14 QLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRI-IAVIHSEKERE 71 +L +T EG +KGFGF+ D +I P + + GD + + +I + Sbjct: 64 KLVQETKTVEGSFHGNDKGFGFVRYDPDLPDIYINPDNTQFAITGDDVAVEIIRPARPGS 123 Query: 72 SAEPE----ELVEPFLTRFVGKVQGKNDRLAIV-----PDHPLLKDAIPCRAARGLNHEF 122 PE +V+ T+ VG D I+ D L K + +GL+ Sbjct: 124 DRGPEGKIVSIVKRNYTQIVGAYTPSTDEDGIIGSVEIKDKKLSKYQLLI-TDQGLHP-- 180 Query: 123 KEGDWAVAEMRRHP-LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 EG+ +AE+ +P + Q I DD + + +H++ P+ V E Sbjct: 181 TEGEVIIAEVAAYPDAQHPTRMIGIAKQVIGSVDDPGMDVLQVVYQHDVPSVFPEEVTDE 240 Query: 182 -------MLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + DE V R D+T VTID A ++D+DDA+ A LP+ L V IAD + Sbjct: 241 ANRIPDYVTDEEKVGRVDITDQPLVTIDGAESKDLDDAVVAWRLPNGNFHLGVHIADVSH 300 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ E S+LD+ A R + YL IPMLPR LS+ +CSL + R ++C M + G Sbjct: 301 YVTENSELDREAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPDVERLAMSCEMEIDQTGE 360 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-EAIAEQVRL------LAQICQR 346 I N + F + I S A++ YD V+ LE P++ E A+ V + L +I + Sbjct: 361 IV-NHKIFQSVIRSHARMTYDAVNQILEA---HDPKTREKYADLVDMFDTMGDLHRILYK 416 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 RH A+ F D + + I+ E G +DI R +A R++E M+AAN A+ Sbjct: 417 H--RRHRGAIDFDDN-EAKIIVDEAGHPIDIQLRVRGLAERMIESFMLAANETVAKNYSQ 473 Query: 407 -KLGFGIYNVHMGFDPANADALAALLKTHGLHV-----DAEEVLTLDGFCKLRRELDAQP 460 K+ F IY VH D + + G+ V D + + D K+ + + Sbjct: 474 LKVPF-IYRVHETPDSDRMLSFFEFVTNFGVSVKGSSKDVKPKMLQDVLKKVAGKPEEAM 532 Query: 461 TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA 520 + R + +A+ S HFGL Y +TSPIR+Y DM+ HRL++ + T Sbjct: 533 VSVMMLRSMKQARYADQSL---GHFGLAAPYYTHFTSPIRRYPDMMVHRLIRHYAENGTG 589 Query: 521 ----TRPQDEI-----TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 R +D + T ERR ++ ERDV A ++ D G F A + + Sbjct: 590 EEARARYRDNLPNIAETTSDHERRGID--TERDVDSMKKAEYMADHVG--ETFEAVVDSV 645 Query: 572 SRGGMRVRL 580 + G+ V L Sbjct: 646 MKFGLFVEL 654 >UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF06_9ACTN Length = 694 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 177/670 (26%), Positives = 280/670 (41%), Gaps = 100/670 (14%) Query: 31 KGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE------KERESAEPEELVEPFLT 84 G+GF++ A+ +FIP MK GD ++AV + + R + P+ V +T Sbjct: 7 SGYGFVKT-AEGEFFIPESAMKSAFDGD-VVAVSRASGGDGNRRARRTDRPQGRVARVVT 64 Query: 85 R----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGD 140 R VG+ + +VP+ P ++ I R +EGD + +P G Sbjct: 65 RAHASIVGRYEIAEPYGVVVPEDPRIRHDIFT--LRRDASTAREGDIVRVRITAYPEAGQ 122 Query: 141 RSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD-----------GVATEMLDEGLVR 189 +F + + + D + + +ARH L D G+ + DEG Sbjct: 123 PAF-GSIEEVVGHEGDAGIDVDLIVARHTLATCFSDDALAQAASAEAGIDRALRDEGY-- 179 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 DL TID + D DDAL + D L++ V IAD + +++ + LD A+ RA Sbjct: 180 RDLRHRITFTIDPSDARDFDDALSFDEV-DGLLRVGVHIADVSRYVSWATPLDFEARARA 238 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 + YL +PMLP +LS+D+CSL+ N R + + S + ++ + A IESKA Sbjct: 239 TSVYLVDRVLPMLPEKLSNDICSLKPNVARRAVTVDLYYSHALELV-RVDAYPAVIESKA 297 Query: 310 KLVYDQVSDWLEN------------------------------------------TGDWQ 327 + VY+ V LE+ GD Sbjct: 298 RFVYEDVQACLESMRALGSSDLEGRETPRYACSADELSGSCTLDGALRSALGSSVAGDDM 357 Query: 328 PESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANR 387 AIA ++ L +I + R + DR + + L ++G L + R A Sbjct: 358 HGIRAIAARLESLHRIARALRARRARAGGIDFDREETKVRLDDQGRPLSVDLRRRNDATS 417 Query: 388 IVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLD 447 +VEEAMI+AN AR++RD IY VH D + + +L G ++ ++L Sbjct: 418 LVEEAMISANEAVARIMRDAGAACIYRVHEAPDSGDLIDIVPILDEFGY----DDAVSLS 473 Query: 448 GFC--------KLRRELDAQPTGFLDSR-IRRFQSFAEISTEPGPHFGLGLEAYATWTSP 498 F + +P G L S + R A + E PHFGL AY +TSP Sbjct: 474 AFAMGSPKAVQAVLARAHGRPEGSLVSMLVLRAMKQARYAPECQPHFGLASAAYLHFTSP 533 Query: 499 IRKYGDMINHRLLKAVIKGETATRPQDE-----ITVQMAERRRLNRMAERDVGDWLYARF 553 IR+Y D++ HRLLKAV++G T E I + + ++ A R+ + Sbjct: 534 IRRYPDLMAHRLLKAVLRGRDGTTSAQEAALPDIADHASRQEKVAETAARESQELKMYEL 593 Query: 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP----APFLH--AVRDELVCSQEN 607 L + G F + +S G VR ++ GA F+P F H + R ++ E+ Sbjct: 594 LSEHIGEP--FDGMVSGVSTSGFYVR-IEMGAEGFVPMRDLGEFFHLDSAR-RMLSGVES 649 Query: 608 GTVQIKGETV 617 G V G+ V Sbjct: 650 GDVVRLGDAV 659 >UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5_PAESJ Length = 941 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 172/657 (26%), Positives = 282/657 (42%), Gaps = 61/657 (9%) Query: 24 GVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKE---RESAEPEEL 78 G ++A KGF FL D + +I K M+GD + I S+ E R E + Sbjct: 71 GKIQAHAKGFAFLLPDEKDHPDVYIHANDQKSAMNGDIALVRITSQSEGGGRMEGEVVRI 130 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 V+ +T+ VG + +VPD + I +G G V ++ +P + Sbjct: 131 VQRAVTQVVGTFESHEAFGFVVPDDKRINRDIFI--PKGEFQGAVTGQKVVVKITSYP-E 187 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNL-----------EKEAPDGVATE-MLDEG 186 G + E+ + + +D + + +H L + APD + E ++++G Sbjct: 188 GRSAAQGEIIEILGHKNDPGIDILSIIRKHQLPEGFSDEVMAEAEAAPDSITEEEIVEQG 247 Query: 187 LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 R DL VTID +D+DDA+ K L + L V IAD ++ E S LD+ A Sbjct: 248 --RRDLRGEVIVTIDGEDAKDLDDAVHVKRLENGNYLLGVHIADVGYYVKERSALDQEAF 305 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD-GTIEDNIEFFAATI 305 R + YL IPMLP LS+ +CSL R L+C M + + +I F + I Sbjct: 306 RRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFDSKLKRVRHDI--FTSVI 363 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEA-----IAEQVRLLAQICQRRGEWRHNHALVFKD 360 ++K ++ Y V L T + + + L+ ++ + + R + D Sbjct: 364 KTKERMTYTNVRKILMATEEEPETELKERYADLLDMFTLMEELAMKLRKKRMKRGAIDFD 423 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR-DKLGFGIYNVHMGF 419 + + I+ ++G+ +DIV R +A +I+EE M+AAN A ++ F +Y +H Sbjct: 424 FQESKVIVDKEGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLRVPF-LYRIHEDP 482 Query: 420 DPAN-------ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQ 472 D A ++K G V + TL L + + + + R Sbjct: 483 DQEKLLHFMQFASNFGYVVKGKGNSVHPRALQTL-----LEEIHGTKEETVISTVMLRSM 537 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV---------IKGETATRP 523 A+ E HFGL E Y+ +TSPIR+Y D++ HR+++ V I+ E Sbjct: 538 KQAKYDAESLGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVLENGGALPEIRNEALAAR 597 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 +I +ER R+ AERD F+ DK G + F I ++ GM V L DN Sbjct: 598 MPDIAQHSSERERVAVDAERDTDKLKKCEFMLDKVGEE--FDGIISSVTSFGMFVEL-DN 654 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSI 638 I L + D+ E V I T VY++ D + + +A+V M+ +I Sbjct: 655 TVEGLIR---LSGLTDDYYHFHELHMVLIGERTSKVYRIGDEVKIRVAQVNMDDYTI 708 >UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepID=RNR_VIBCH Length = 821 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 157/655 (23%), Positives = 284/655 (43%), Gaps = 55/655 (8%) Query: 23 EGVVKATEKGFGFL----EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE-- 76 +G V + G G++ ++ + +P QM+ ++HGD ++ +R E Sbjct: 90 KGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIHGDFVLVQPSGTDKRGRKEGRLV 149 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 ++E + VG+ + +VPD + I L + G+ V E+ Sbjct: 150 RILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILI--PNDLRAGARMGNVVVIEITDRG 207 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD-------GVATEMLDEGLV- 188 + +R ++ + + + + + H + E P G+ E+ +E Sbjct: 208 TR-NRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGLTEEVPEEAKQG 266 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL AL VTID D DDA++ +A +L VAIAD + ++ + LDK A R Sbjct: 267 RVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTALDKEAINR 326 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + Y P +PMLP LS+ LCSL R + C MT+S G + + + A + S Sbjct: 327 GNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKL-SGYKHYEAVMNSH 385 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A+L Y +V + LE + + +A+ + L ++ Q R + + + +FI Sbjct: 386 ARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIF 445 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 + ++ I R A++++EE MI ANI +A ++ +Y VH +P + L Sbjct: 446 NAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEAALYRVH---EPPGEERLT 502 Query: 429 A---LLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPH 484 L GL + + + L +++ +P + + + R A + + H Sbjct: 503 GFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLLRSMKQAVYNADNAGH 562 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEIT---------------- 528 FGL L+ YA +TSPIR+Y D++ HR +K +I + R QD T Sbjct: 563 FGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEG-RNQDRWTPTGGYHYSFDDMDFYG 621 Query: 529 --VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 M ERR + A R+V DWL +++D G + + +++ G VRL + Sbjct: 622 EQCSMTERRADD--ATREVSDWLKCEYMQDHVGEE--LEGVVANVTSFGFFVRLTELHID 677 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGET---VYKVTDVIDVTIAEVRMETRSI 638 + + + ++ G ++ GE+ +Y++ D + V + V ++ R I Sbjct: 678 GLV---HISTLANDYYHYDPIGQ-RLVGESFGAIYRLGDAVKVKVLAVNLDDRQI 728 >UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQN7_BDEBA Length = 858 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 155/584 (26%), Positives = 265/584 (45%), Gaps = 44/584 (7%) Query: 24 GVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEK--ERESAEPEELV 79 G +K GFGF D ++ +IP M+ +M D++ + EK ER E + ++ Sbjct: 9 GTIKRHPDGFGFFIPDDKEHPDVYIPRHSMEGIMTNDKVAVEVTPEKGGERFRGELDHVL 68 Query: 80 EPFLTRFVGKVQGKNDRLAIVPDHPL-----LKDAIPCRAARGLNHEFKEGDWAVAEMRR 134 VG+ N+R ++ D LK I + + K+ + AE+ Sbjct: 69 SRGTKTVVGRFFKMNERTGLIRDEGKGWGQDLKIKIED------SMQAKDKELVAAEITS 122 Query: 135 HPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA------TEMLDEGLV 188 +P G + F ++ + I D + +++ E +E+ DE Sbjct: 123 YPDDG-KPFTGKVIEIIGDAMDPLTDLKRVIRANHIPLEFSKATLEEAEHFSEVPDEKDF 181 Query: 189 --REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 R DL +TID A+ +D DDA++ + L ++ L VAIAD + ++ G+ +DK A Sbjct: 182 KGRRDLRDKALITIDGATAKDFDDAVYVETL-NEGFLLYVAIADVSHYVKIGTAIDKDAY 240 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 R + Y+P F +PMLP LS+ LCSL + R L M G + + +F+ A +E Sbjct: 241 ERGTSVYMPNFVVPMLPEVLSNGLCSLNPHVPRLCLVAEMLFDFTGELVKS-DFYEAVME 299 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 SKA++ Y + + ++ G+ + + + + + L+ + + R + + P+ Sbjct: 300 SKARVTYGEAQEIID--GNEVEKHKHVKDHILRLSDLAKILMAKRFKEGSLDLEIPETEL 357 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 ++ G +DI R A+R++EE M+AAN+ A+ L + +Y +H +P N A Sbjct: 358 VIDGAGVPVDIQRSERLFAHRLIEEMMLAANVAVAKFLSSREIPALYRIH---EPPNEMA 414 Query: 427 LAAL---LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPG 482 + L L G K E + +P L+ R S A+ + Sbjct: 415 IRTLEKYLANFGGKTKLGSGKLQKRLTKALEEFEGRPEAQILNILTLRSMSQAKYNMNNV 474 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR--PQDEI----TVQMAERRR 536 HFGLG E Y +TSPIR+Y D+I HRLLK + + R +D++ T+ A +R Sbjct: 475 GHFGLGFEFYTHFTSPIRRYPDLIVHRLLKTQVMPNSRYRLMSEDDLATAGTILSAAEQR 534 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + AER V ARF++ G + F I +++ G+ V L Sbjct: 535 STK-AERQVQSIKKARFMQKFIGQE--FDGMISSVAKFGVFVLL 575 >UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q28VI9_JANSC Length = 778 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 143/491 (29%), Positives = 214/491 (43%), Gaps = 31/491 (6%) Query: 163 VTLARHNLEKEAPDGVATEM---LDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALP 218 + + H + P+ V E GL REDL L +TID A D DDA +A A Sbjct: 234 IAIHEHGIPDSFPNKVVAEADAAKPAGLTGREDLRDLPLITIDPADARDHDDACYAHADE 293 Query: 219 DDKLQ----LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274 D + + VAIAD ++ S LD+ A+ R + Y P +PMLP LS DLCSL Sbjct: 294 DPGNKGGHVIWVAIADVAHYVTPDSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLH 353 Query: 275 ANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA 334 R V+A RM + A G + F + S A L Y++ E T + + I Sbjct: 354 EGVPRAVIAVRMVIDARGEKIGHT-FHRGLMTSVASLSYEEAQAAQEGTLSER-TAPLIE 411 Query: 335 EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMI 394 +R L R + D P+ R L + G V + + R A+R++EE M+ Sbjct: 412 GSIRPLFAAYDALKIARAKRQPLELDLPERRIELDDAGNVTSVAFKDRLDAHRLIEEFMV 471 Query: 395 AANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRR 454 AN+ AA L K ++ VH P +AL + + GL + +VL L + Sbjct: 472 LANVAAAETLIAKRTPLLFRVHEEPSPEKLEALREVAASAGLTLAKGQVLQTRHLNALLK 531 Query: 455 ELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 + + R A + E HFGL L++YA +TSPIR+Y D+I HR L A Sbjct: 532 AAGEDTSELISISTLRSMQQAYYNPENFGHFGLALKSYAHFTSPIRRYADLIVHRALIAA 591 Query: 515 -----------IKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTR 563 + + R +D + RR + +AERD D A +L D+ G + Sbjct: 592 HGWGPDAKIDGLSPDEIERLEDTAKLISGTERR-SMVAERDTSDRYLAAYLSDRVGAE-- 648 Query: 564 FAAEIVDISRGGMRVRLVDNGAIAFIP-----APFLH--AVRDELVCSQENGTVQIKGET 616 F I I+R G+ V+L + GA +P + H A L+ + + I Sbjct: 649 FGGRISGIARFGVFVKLDETGADGLLPMRALGQEYFHFDAEAQTLMGADTGTMISIGDRV 708 Query: 617 VYKVTDVIDVT 627 + K+ + + VT Sbjct: 709 LVKLAEAVPVT 719 >UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQS9_LAWIP Length = 813 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 130/417 (31%), Positives = 198/417 (47%), Gaps = 34/417 (8%) Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 +R+DL +DFVTID +D DDA+ D L VAIAD + ++ GS LD A Sbjct: 307 IRQDLRVIDFVTIDGEDAKDFDDAICVYP-TDIGWDLWVAIADVSHFVRAGSLLDSEALA 365 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + Y P MLP LS+D CSL+ E R V+A +++ DG + N+ FF I S Sbjct: 366 RGNSYYFPCSVESMLPEFLSNDFCSLKPKEERLVMATKISFDNDGKTK-NVIFFPGVISS 424 Query: 308 KAKLVYDQVSDWLE----NTGDWQPESEAIAEQVRLLAQICQ----RRGEWRHNHALVFK 359 +A+L Y+QV LE + ++ ++ LA++ Q +RG +L F Sbjct: 425 RARLTYEQVHLALEVKEISRLPGGIDTLSMLNNASELAKVLQANRIKRG------SLEF- 477 Query: 360 DRPDYRFILGEKG-EVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 D P+ RF++ + V+ ++ + R +++++EE M+A N A L DK +Y +H Sbjct: 478 DLPETRFLINKATRRVIGVIRQERFFSHQLIEELMLAVNEAVATFLHDKQIPFLYRIHPE 537 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEI 477 D + L +L T L + E + P FL SR + R A+ Sbjct: 538 PDIERLEKLFRILATTDLACQLSGSPDAKKLGGILEEAENTPQTFLISRMVLRSMMQAKY 597 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAER--- 534 S EPG HFGL Y +TSPIR+Y D++ HR +K + P + +AE+ Sbjct: 598 SPEPGEHFGLASPLYCHFTSPIRRYADLLVHRAVKFALGDTQKHIPFGQQLFSIAEQCNS 657 Query: 535 -RRLNRMAERDVGDWLYARFLKDKAG----------TDTRFAAEIVDISRGGMRVRL 580 R+ + AER++ L L+ G TD F E++ + GM VRL Sbjct: 658 HERVAQEAEREITKRLSCLVLQGDEGKIFEAIVTGITDFAFFVELISMPIEGM-VRL 713 >UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ5_9SPHI Length = 825 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 166/661 (25%), Positives = 288/661 (43%), Gaps = 63/661 (9%) Query: 23 EGVVKATEKGFGFL--------EVDAQKSYFIPPPQMKKVMHGDRIIAVI---------H 65 EGVV F F+ D ++ + + GDR+ V + Sbjct: 122 EGVVDHVNSRFAFVIPDTAAGTARDRDDDIWVSTDDLAGAVDGDRVRVVRFQDSRNGGRN 181 Query: 66 SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI--PCRAARGLNHEFK 123 + + R + +VE T VG+++ +VPD + D I P G N Sbjct: 182 AARRRIEGKVASVVERGRTELVGRIEVWPTYGFVVPDSKKIYDDIFIPKEKLGGAN---- 237 Query: 124 EGDWAVAEMRRHP--LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL--------EKE 173 +G+ + + + P + F E+ + + LA L EKE Sbjct: 238 DGEKVIVRLTKFPDPNSSKQRFEGEVITVLGVAGQNNTEMHAILAEFGLPIHFPADVEKE 297 Query: 174 APDGVATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 A + + T++L + L R D+ + TID +D DDAL + L + ++ + IAD T Sbjct: 298 A-EAIPTKILKKDLAKRRDMRDVTTFTIDPIDAKDFDDALSVQILDNGNFEIGIHIADVT 356 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ GSKL++ A RA + YL +PMLP +LS+ LCSLR NE + + +++D Sbjct: 357 HYVLPGSKLEEEAFKRATSVYLVDRVVPMLPEKLSNGLCSLRPNEDKLTFSAVFEMTSDA 416 Query: 293 TIEDNIEFFAAT-IESKAKLVYDQVSDWLE-NTGDWQPESEAIAEQVRLLAQICQRRGEW 350 I + E+F T I S + Y++ D L N+GD+ E++RLL ++ + + Sbjct: 417 KIVN--EWFGRTAIHSNRRFAYEEAQDILNSNSGDY-------IEELRLLNELAYKLRDE 467 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-----R 405 R + + + + RF L E G L + + R+ N+++EE M+ AN A + R Sbjct: 468 RFKNGAINFETVEVRFRLDENGVPLAVYPKIRQDTNKLIEEFMLLANKRVAEFVHSLSKR 527 Query: 406 DKLG---FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-T 461 +K G +Y VH + + + G ++ ++ + + ++ +P Sbjct: 528 NKGGEENTMVYRVHESPAEDKLRSFSDFARKLGYKLNVDDEHLSNSMNRFMASIEGKPEA 587 Query: 462 GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGETA 520 L R S A STE HFGL + Y+ +TSPIR+Y DM+ HRLL+ + KG+ A Sbjct: 588 NMLQQLAVRTMSKARYSTEDLGHFGLAFKRYSHFTSPIRRYPDMMAHRLLQHYLDKGKPA 647 Query: 521 TRPQ-DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 R + +E +ER ++ AER + F+ + D F I ++ G+ V Sbjct: 648 DRDEYEEKCRHSSEREKMASDAERASIKYKQVEFMS-RMAPDQVFEGVISGVTEFGIFVE 706 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRS 637 + +N + + + D+ ++ I T +Y D + V + E + RS Sbjct: 707 ITENSCEGLVR---MQDLSDDFYEFDKDNYRIIGSRTKKMYTFGDAVVVRVKETNLARRS 763 Query: 638 I 638 + Sbjct: 764 M 764 >UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID=RNR_MYCPU Length = 725 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 145/594 (24%), Positives = 277/594 (46%), Gaps = 48/594 (8%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS---EKERESA 73 ++ + +G+ K + + F F+E ++SYF+ ++ + A+++ EK+++ A Sbjct: 59 NEIKKIQGIFKQSNRNFAFIETADEQSYFVAKAHFNGAINSFEVEAIVYESPFEKDKKYA 118 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 +++++ +G ++ N I + + + N + +E D + + Sbjct: 119 VVKKILKNTHPEIIGFIKISN---GIKYFNAFEESFRSYKFFVDQNIDVEEDDVILVVVE 175 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE--MLDEGLV--- 188 + D+ Y + ++ +F + L + + P+ V E ++++ ++ Sbjct: 176 KIV---DQKIYVNFVKKVSTLKSNFYQIDIVLEKSKTIIDFPEDVLDESALIEDHVIEKD 232 Query: 189 ---REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 R+DL +TID T+D DDA++ + D L L V IAD ++ E S +DK A Sbjct: 233 YQNRKDLRDKLIITIDGEDTKDFDDAIYVEKNKDHFL-LSVHIADVAHYVKENSAIDKEA 291 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG-TIEDNIEFFAAT 304 RA + YLP IPMLP +LS+ +CSL R V++ + + G TI+ E + Sbjct: 292 LRRATSIYLPHMVIPMLPEKLSNGICSLNPGVDRLVMSIDIFIDFQGNTIK--TELYEGI 349 Query: 305 IESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 I SK +L Y+QV+D+ N P E + L++I + ++ + + + + Sbjct: 350 INSKHRLTYNQVNDFYNNKIKLDPNLEKMLNDSLELSKILEN---YKKDEGYINLEIEES 406 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-GIYNVHMGFDPAN 423 + IL ++G+ + I R ++ ++E M+ AN A + +KL IY VH D + Sbjct: 407 KVILDKEGKTVGIKVIQRGLSEVLIENFMVRANEAVAWKM-NKLKLPSIYRVH---DNPS 462 Query: 424 ADALAAL---LKTHGLHVDAEEVLT----LDGFCKLRRELDAQPTGFLDSRIRRFQSFAE 476 ++L LKT G+ D ++ + D F K+++ + Q F+ + R A Sbjct: 463 IESLVLFEKTLKTLGIDFDTPKITSPKAFSDSFEKIKQ--NYQIDNFVKLMVLRTMEKAI 520 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ--------DEIT 528 S + HFGL Y+ +TSPIR+Y D+ HRL+K ++ ++ + + +++ Sbjct: 521 YSDKNIGHFGLASSYYSHFTSPIRRYPDLQLHRLIKQMVFDKSNLKEKKNHFSLILSDVS 580 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 VQ +++ ER + D A + + K G + A+IV I GM V D Sbjct: 581 VQSSKKEVEAVSIERQINDIKKAEYYESKIGKSLK--AQIVSILSFGMFVEFED 632 >UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RHS0_PORG3 Length = 731 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 162/630 (25%), Positives = 270/630 (42%), Gaps = 53/630 (8%) Query: 45 FIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELVEPFLTRFVGKVQGKND-RLAIVP 101 FI M GD++ + +++ + E E++E FVGK+Q D + Sbjct: 125 FIAERNSAHAMDGDKVKVQLFAKRRGRAPEAAVIEIIEQKQATFVGKIQINRDFAFLVTE 184 Query: 102 DHPLLKDAIPCRAARGLNHEFKEGDWAVA------EMRRHPL---------KGDRSFYAE 146 D L D + G K GD + E ++P+ GD AE Sbjct: 185 DRTLANDIFIPKDNLG---NAKNGDKVIVRILEWPEQSKNPIGEVQAVLGPAGDND--AE 239 Query: 147 LTQYIT-FGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSAST 205 + + FG + P V A L DG TE +E RED ++ TID Sbjct: 240 MNAILAEFGLPYVYPQEVEEAADRL-----DGKITE--EELARREDFRSVLTFTIDPKDA 292 Query: 206 EDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRE 265 +D DDA+ + L DD ++ V IAD + ++ EG +D+ A RA + YL IPMLP Sbjct: 293 KDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGIIDQEAYNRATSIYLVDRTIPMLPER 352 Query: 266 LSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN-TG 324 L +DLCSLR +E + +C ++ + + D + I+S + Y++ +E G Sbjct: 353 LCNDLCSLRPDEEKYAYSCIFRMNDEAKVLD-YRICHSVIKSDRRFAYEEAQAVIETGEG 411 Query: 325 DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRI 384 D + E + L ++ QR E R + + +R + RF + EKG L ++ + + Sbjct: 412 DCK-------EAILKLNELAQRLREERFQNGAIAFERKEVRFEIDEKGRPLGVIVKESKE 464 Query: 385 ANRIVEEAMIAANICAARVLRD-----KLGFGIYNVHMGFDPANADALAALLKTHG--LH 437 AN+++EE M+ AN AR + + + +Y +H DP + L+ ++ G L Sbjct: 465 ANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDLPDPDKLETLSDFIRRFGYKLR 524 Query: 438 VDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAEISTEPGPHFGLGLEAYATWT 496 + L + +P L S + R + A ST+ H+GL + Y +T Sbjct: 525 TTGSNMEVSKSINSLLDNIQNKPEENLISTVAIRSMAKAIYSTDNIGHYGLAFDFYTHFT 584 Query: 497 SPIRKYGDMINHRLLKAVIKGETATRPQD--EITVQMAERRRLNRMAERDVGDWLYARFL 554 SPIR+Y D++ HRLL + G ++ D E + +L AER + F+ Sbjct: 585 SPIRRYPDLMVHRLLTKYLSGGSSVDKNDYEEKCKHSSAMEQLAASAERASIKYKQVEFM 644 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKG 614 + G F I ++ G+ V L +N IP L E + + + Sbjct: 645 SEHLG--KVFDGVISGVTEWGLYVELKENMCEGLIPIRCLDDDYYEYD-DKNFCLIGRRY 701 Query: 615 ETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 Y + D I V +A+ ++ + + PV+ Sbjct: 702 RHRYSLGDAITVRVAQANLDRKQLDFEPVS 731 >UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC79_9DELT Length = 660 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 174/640 (27%), Positives = 271/640 (42%), Gaps = 68/640 (10%) Query: 32 GFGF---LEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVG 88 G+GF L D ++S FIPP ++ + GD I V ++ E +V TR VG Sbjct: 7 GYGFAQPLSGDEKRSVFIPPGYLRGALDGDEIEVVAWESEKGLEGRIEAIVTRKRTRIVG 66 Query: 89 KVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE------GDWAVAEMRRHPLKGDRS 142 + + D P + + C A K G VA + +P G R Sbjct: 67 VLVEFGGGWILEVDDPRIIWPVVCVAGPKGRKGSKAPRPDMPGMVVVANIVNYP--GSRD 124 Query: 143 FYAELTQYITFGD------------------DHFVPWWVTLARHNLEKEAPDGVATEMLD 184 E+ G+ D F P + A E P+ V E L+ Sbjct: 125 PEIEVQVERVLGEPGALETEVQKILIDRRIEDFFDPKVLAEA-----AEVPEIVLDEDLE 179 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDK----LQLIVAIADPTAWIAEGSK 240 R DL L F+TID D DDA+ + L +D +L VA+AD + ++ EG+ Sbjct: 180 N---RADLRGLAFMTIDPPDARDFDDAVCVELLGEDPQTADYRLHVAVADVSHYVQEGTA 236 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 +D+ A+ R F+ YLP +IPMLP ELS +CSL R + M ++A G ++ E Sbjct: 237 IDEEAQRRCFSTYLPDRSIPMLPPELSSHMCSLVPKRDRLAMVTSMRVNAAGQTSEH-EV 295 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 AA I S+ +L Y +V++ LE ++ +V L R R + D Sbjct: 296 RAAIIHSRRRLTYAEVAEELEGAEQLGKKARG---RVFALRACSDRLRNARMRRGAIELD 352 Query: 361 RPDYRFILGE--KGEVLDIV----AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 + + +L E + + D+V ++ A ++EE MIAAN + + ++ Sbjct: 353 LAEAKVVLEEDDRTRIRDVVKSRSSKSMARAYNLIEEMMIAANEAVGALAVEHGLPAVFR 412 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQS 473 VH D L G D E + T G K + LD + L+ + R + Sbjct: 413 VHDLPDEEKLTTLTQAAHILGTKADPERLRTPRGAQKFLKRLDGKSFASALNMLMLRAMA 472 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI------KGETATRPQ--- 524 A+ + E HF L AY +TSPIR+Y D+I+HR+LKA + G A P+ Sbjct: 473 QAQYAVENVGHFALASPAYVHFTSPIRRYPDLISHRVLKAWVAKKGGPAGPKAVLPRMPG 532 Query: 525 ----DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + ++ +ER R AER+ + A F++D+ G RF + +S+ G+ V++ Sbjct: 533 REASEAQALRSSEREREISGAERETQNLFAALFMRDRIG--DRFDGRVSGMSQFGLFVQI 590 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKV 620 + L R E E G V++ GE KV Sbjct: 591 ESPYVDGMVKVADLEKDRKEPYYRDETG-VRMVGEKSGKV 629 >UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q048G6_LACDB Length = 789 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 170/674 (25%), Positives = 289/674 (42%), Gaps = 63/674 (9%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS--YFIPPPQMKKVMHGDRI-IAVIHSEK 68 + QL + EGV +A +KGFGF+ +D +++ FI K + GDR+ + + Sbjct: 63 RYQLAKENTEVEGVFRANDKGFGFVRLDDEEADDVFINSDATKLALDGDRVKVKITAGGN 122 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLA------------IVPDHPLLKDAIPCRAAR 116 PE VE L R + G+ L ++P + K + Sbjct: 123 PWNGKGPEGQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVIPTNKKFKKYRVYVSEN 182 Query: 117 GLNHEFKEGDWAVAEMRRHPLKG-DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-- 173 GL + GD ++ +P + + + I +D V +A H++ E Sbjct: 183 GLIPQM--GDMVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIMSIVAEHDIRTEWP 240 Query: 174 ---------APDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 PD V E E R D+T VTID ++D DDA+ L + L Sbjct: 241 EDALEQANAIPDHVTEEERHEA-GRRDITDQPAVTIDGDDSKDFDDAVVLWKLDNGNYHL 299 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD ++ EG+ LD+ A R + YL IPMLP LS+ +CSL R VL+C Sbjct: 300 GVHIADVAHYVKEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSC 359 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN---TGDWQPESEAIAEQVRLLA 341 M ++ +G + + + A + S +L Y++V+ L D + + + ++ +A Sbjct: 360 DMEITPEGE-RVSYDIYPALMRSHGRLTYNKVNQALRADVPDSDLEDKYVKVRPMLKDMA 418 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICA 400 + + + RH + + P+ + I+ EKG+ +DIV R A +++E M+ AN A Sbjct: 419 ALHEVLYKKRHARGAIDFEEPEAKIIVDEKGKPVDIVLHSRGTAEKMIESFMLLANETVA 478 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRELDA 458 R K+ F +Y VH + GL+V D ++ LD + + L Sbjct: 479 EAYYRKKVPF-LYRVHETPEADRISRFFEFCSAFGLNVKADPNDIKPLDLQKVVTKTLGT 537 Query: 459 QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-- 516 + + R A S +P HFG+ + Y +TSPIR+Y D + HR++ A ++ Sbjct: 538 SEESVVQMMMLRSLKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMVHRMIHAYLEEG 597 Query: 517 ---------GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 E + D+ ++Q ERR ++ ER D ++ D+ G +F A Sbjct: 598 MGDDVKEHFKEELSEAADQTSMQ--ERRSID--TERATNDLKMTEYMADQVG--NKFEAV 651 Query: 568 IVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETV---YKVTDVI 624 + ++ GM V+L +N I + ++D+ E ++ + G T YKV I Sbjct: 652 VSSVTSFGMFVQL-ENTVEGLI---HISNLKDDYYSYDEK-SMTLTGRTTHKKYKVGMPI 706 Query: 625 DVTIAEVRMETRSI 638 V + +E + Sbjct: 707 KVVLTNANVEQHQL 720 >UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V602_9FIRM Length = 898 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 169/653 (25%), Positives = 277/653 (42%), Gaps = 58/653 (8%) Query: 24 GVVKATEKGFGFL-----EVDAQKSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPE- 76 G + + KGFGF+ E + + F+P M MHGDR++A V SE+ + E E Sbjct: 76 GRLSMSPKGFGFIIPDVRETEEETDVFVPGSAMGTAMHGDRVVARVTPSEQPGRAREGEI 135 Query: 77 -ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF---KEGDWAVAEM 132 ++E T VG + + PD + + L +F K G V E+ Sbjct: 136 IRILERVNTHIVGTFERSKAFGFVTPDSTKIGRDVFV-----LKKDFGGAKTGSKVVVEI 190 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE--------MLD 184 + P + RS + + + D V + ++L+++ P VA + + Sbjct: 191 TKWPEQ-RRSAEGRVVEVLGKTGDPGVDVLAVMRAYDLDEKFPPDVAEAAARCPKDPLPE 249 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 E R D VTID T+D+DD ++A D L V IAD + ++ G LD+ Sbjct: 250 EYAGRRDRRDFPIVTIDGEDTKDIDDGVYAYE-KDGVFFLGVYIADVSHYVRAGEPLDRE 308 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A R + YL IPMLP+ELS+ +CSL R +AC M + DG + N E Sbjct: 309 AARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMEIGMDGEVR-NYEIVPCV 367 Query: 305 IESKAKLVYDQVSD-------WLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 I +L Y V+ ++ + GD +P + E +R L ++ + + RH + Sbjct: 368 IHVARRLTYTLVNKVLAGEEPFVSDNGDIRP----MLETLRRLREVLRAK---RHRRGSI 420 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + P+ + L G + + I I+EE M+AAN AR + K +Y VH Sbjct: 421 DFELPEVKVKLDADGHPVALEKRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVHE 480 Query: 418 GFDPANADALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSF 474 + L +LL G LHVD + + ++ + QP + + R Sbjct: 481 TPAAEKIERLQSLLAALGLRLHVDEDGKVRPSDIQQVLDRVKGQPEERIIGAVALRSMQQ 540 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGETATRPQDEITVQMAE 533 A ST HFGL Y +TSPIR+Y D++ HRLL+ G A ++ + + E Sbjct: 541 ARYSTASLGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIAAEKRERLRALLPE 600 Query: 534 -------RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 R R+ AER+ D ++ G + I ++ G+ V L +NG Sbjct: 601 AAEHSSARERIAIEAERETTDMKKIEYMAQFVGET--YEGVISGVTAFGIFVEL-ENGVE 657 Query: 587 AFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + + V D ++ V + T Y++ D + + I ++ R++ Sbjct: 658 GLVHVSTM--VNDYYSYIEDQYAMVGERTGTRYRLGDTVTIIITRADVQARTL 708 >UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJU5_ACIFE Length = 823 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 177/656 (26%), Positives = 290/656 (44%), Gaps = 55/656 (8%) Query: 20 PRAEGVV----KATEKGFGFL---EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE--KER 70 P A G+V + T KGF F+ E FIP + M GD +IA + +R Sbjct: 65 PAAMGLVVGRCQVTSKGFAFVIPEEKTEDGDLFIPASSLSGAMDGDTVIARVMQSGYDDR 124 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 + + ++ + VG + ++PD+ + I R R + ++ + V Sbjct: 125 QEGKIIRILNRAHHKLVGTFSKSGEFGFVIPDNKRVGRDIYVR--RKDFNGARDKEKVVV 182 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE--APDGVATEMLDEGLV 188 E+ P + R+ ++ + + D + + ++L + AP VA E +++ + Sbjct: 183 EITTWPDE-RRNAEGKIVEILGKPGDIGLEILSIIKDNDLPTKFPAPVQVAAEKVEQKIK 241 Query: 189 REDL-TALD-----FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 ++++ LD +TID ++D+DDA++ + D+ L V IAD + ++ S LD Sbjct: 242 KKEIQNRLDRRDWNIITIDGVDSKDLDDAVYVEKQGDNYF-LGVYIADVSYYVQPHSVLD 300 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A R + YL +PMLP ELS+ +CSL E R +AC M L DG + F Sbjct: 301 QEAYERGTSVYLVDRVLPMLPVELSNGICSLNEGEDRLTMACEMLL--DGKTGRTLSFTI 358 Query: 303 A--TIESKAKLVY--------DQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 A I + ++ Y DQ E D P E +A ++L + +RRG Sbjct: 359 APCVINNHHRMNYPDVRAILVDQDEALREKYADIVPMLEDMARLQQVLHKKRERRG---- 414 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFG 411 A+ F + P+ + +L ++ + IV R +A ++EE M+AAN A + R K F Sbjct: 415 --AINF-ELPEQKVLLDDQKHPVAIVKRERSVAEMLIEEFMLAANETVAGFMARHKRPF- 470 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-R 470 IY VH DP LA L+ G+ + EE + + ++ +P L S + R Sbjct: 471 IYRVHDLPDPEKIQNLAKLMALFGVTLKVEEKMRPKDLQRALDKVAGKPEEKLVSTVALR 530 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE---- 526 A TE HFGL Y +TSPIR+Y D++ HRLL+ + GE +R Q E Sbjct: 531 SMRQAVYQTENIGHFGLAAHFYTHFTSPIRRYPDLMVHRLLRRQLDGERLSRQQAEERTQ 590 Query: 527 ----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 + + R R AER D A ++ G + F I +S G V L D Sbjct: 591 RLSLVASHCSVRERAAIDAERQTVDLKMAEYMVQFVGKE--FTGTISGVSSFGFFVEL-D 647 Query: 583 NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 NG + L+ + + Q Q G Y++ D +D+ + +V + R I Sbjct: 648 NGVEGLVHVSSLNDDYYDYIEGQYALIGQHLGHR-YRLGDQVDIQVLQVDVAERKI 702 >UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTA8_9BACT Length = 754 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 131/510 (25%), Positives = 228/510 (44%), Gaps = 21/510 (4%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRI-IAVIHSEKER 70 Q+L +T G++ + G+GF+ +D + FIPP + ++G+ + +++ K+ Sbjct: 57 QELEVKT----GILSLSVGGYGFVNPIDKSTTIFIPPNKTGAAVNGETVEVSITEQSKKG 112 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC--RAARGLNHEFKEGDWA 128 + ++E L G++Q + + ++P L+ IP + + E KEGDW Sbjct: 113 PVGQIINILESKLESLSGQLQIRKGQPWLIP----LRTGIPAVELSVESVPTETKEGDWI 168 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV---ATEMLDE 185 A++ + + A L+Q + DD + +L+ E D A+ + Sbjct: 169 RAKLVSRDTQTGK-ITASLSQSLGNADDLTAEIDAIIDEFDLQSEYSDEAEEAASRIRQR 227 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDK-LQLIVAIADPTAWIAEGSKLDKA 244 + R DLT TID +D DDAL + K + + + IAD A+I S L + Sbjct: 228 KIARRDLTKELITTIDPRDAKDFDDALSVHPAKNKKHITIGIHIADVAAYIGPRSTLMTS 287 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 K RAFT YLPG +PMLP+ L CSL NEV+P +T + N E F +T Sbjct: 288 IKKRAFTAYLPGRMLPMLPKVLVSKRCSLIENEVKPAHTVMITFDRESGEVINFERFHST 347 Query: 305 IESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN-HALVFKDRPD 363 I+ + +L Y +V D+ + P + + + V+ L + + R + D P+ Sbjct: 348 IKVRKRLNYQEVQDYADANFSGDPWGKDVCKDVKTLYEFSHTLRKRREEIEQFIPLDAPE 407 Query: 364 YRFILGEKGEVLD-IVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 R + ++ + + + ++VEE M+AAN A+ L K G++ +H D Sbjct: 408 VRVMCDPVTMTINSLKKDSPSESKQMVEEFMLAANTVVAQELTSKAAPGLFRIHPEPDEE 467 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEP 481 A + + T V ++ + + P+ + R A S+ Sbjct: 468 QAASFSVDANTF-YGVSPGDITLRPNAIRFLNSIKGHPSAPAISMDFLRTMQRASYSSMK 526 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLL 511 G HFGLG Y+ +TSPIR+ D++ H+ L Sbjct: 527 GLHFGLGKNLYSHFTSPIRRLADLLVHQQL 556 >UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2D1_SALRD Length = 666 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 182/671 (27%), Positives = 293/671 (43%), Gaps = 71/671 (10%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRI---IAVIHSE 67 K + + T + GV++ +KGFGF++ D + +FI M + +HGD + +A E Sbjct: 17 KYKTKATTRQHTGVLQCHDKGFGFVQATDQDEEFFIREANMGEALHGDLVRVAVAARAPE 76 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD-HPLLKDA-IPCRAARGLNHEFKEG 125 ++ E E+VE T VG ++D + PD +L+D + A G K+G Sbjct: 77 DKKRECEVLEVVERRCTEVVGTFHHRSDFAFVEPDDQRILQDVYVAPDAFSGA----KDG 132 Query: 126 DWAVAEMRRHPLKGDRSFYAE--LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML 183 + + + R DR E + + I DD V +++ + PD V E Sbjct: 133 EKVMVSIDRF---DDRKASPEGRILRVIGPSDDPNVRVLSLAMSMDVKADFPDEVEAEAE 189 Query: 184 --------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 DE R DL TID +D DDA+ + L + ++ V IAD + ++ Sbjct: 190 SIPVKIPEDEIERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVGVHIADVSHYV 249 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 + +D A R + YL IPMLP +LS+ +CSLR +E + + M L+ +G + Sbjct: 250 EPDTAIDAEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVV 309 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE--QVRLLAQICQRRGEWRHN 353 D E I SK +L YD+ D++E P+ + A+ Q LA+ RR R Sbjct: 310 D-YEICETVIHSKERLTYDRAQDYIEG---GYPDDKMAADVVQANRLAKTITRR---RMQ 362 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL--------- 404 + + IL + G +IV + R ANR++EE M+ AN A+ + Sbjct: 363 EGAIDFGSDEVNVILDDDGTPTNIVRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRH 422 Query: 405 -----RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCK------LR 453 + L F +Y VH D LA ++ D E LT DG + L Sbjct: 423 RSNGTDEPLPF-VYRVHDSPDSEEIQQLAEYVRV----FDHELPLT-DGNARSSDLGALI 476 Query: 454 RELDAQPTGFLDSRIR-RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK 512 E+ QP + R R S AE + H+GLG + Y+ +TSPIR+Y D++ HRLLK Sbjct: 477 DEVQGQPEEQVIVRAALRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLLK 536 Query: 513 AVIKGETATRPQD--EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 KG + +D +E+ R AER+ ++K+ G + F + Sbjct: 537 RYAKGGSPADIEDLAARCEHCSEQERNAEEAERESVKLKQVEYVKNHVGEE--FDGVVSG 594 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGE---TVYKVTDVIDVT 627 +++ G+ V + D + +H + T ++GE T Y+ D + V Sbjct: 595 VTKFGVFVEITD-----LLVEGLVHVREMNDYYVYDESTYTLRGENNGTSYRPGDSVRVE 649 Query: 628 IAEVRMETRSI 638 +A +E R I Sbjct: 650 VASASVEDREI 660 >UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3M9_9FIRM Length = 750 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 148/562 (26%), Positives = 255/562 (45%), Gaps = 38/562 (6%) Query: 23 EGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD-RIIAVIHSEKERESAEPEELVEP 81 +G + KGFGFL+++ + S I + M+GD I+ + S + E +++ Sbjct: 73 QGALSVNRKGFGFLDLEDENSIHITEANLHGAMNGDVAIVKKLPSFYGSDEGEVIRVLQH 132 Query: 82 FLTRFVGKV---QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 VG GK +L + D +K + + + + G + ++ R+ Sbjct: 133 KTNTLVGTFFTSVGKGLQLRL--DDERIKSRLIVKNWQAF--KMVSGTKVLLKVLRY--- 185 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--------DEGLVRE 190 GD E+ Q + DD V L ++++ + P+ V + E R Sbjct: 186 GD-PMELEIVQLLGHIDDPGVDILSVLLEYDIDPQFPEEVMEQAQRTPSRVSPKEKEGRR 244 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 D T +TID ++D+DDA+ + + +L V IAD + ++ E S LD+ A R Sbjct: 245 DCTGKMIITIDGEDSKDLDDAVCVEKIAGG-YRLGVHIADVSHYVPENSPLDQEALKRGT 303 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + Y+ +PMLP LS+ +CSL +R L+C M +S G I N E F + I++ + Sbjct: 304 STYVVDRVVPMLPHLLSNGICSLNPKVLRLTLSCEMEISEAGEIL-NYEIFPSFIKTTER 362 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 + Y V+ LE + + + + E + + + + RH + + P+ + IL E Sbjct: 363 MTYTAVNAILEGEEEACRKYKKLTEMIGWMRDCSRAIRKRRHEAGAIDFETPEAKIILNE 422 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 + ++ +I R+ A I+E+ M+ AN C AR ++ +Y VH +P A + Sbjct: 423 QNKIEEIQVRERKEAEMIIEDFMVTANECVARHMKWFEIPALYRVHEAPEPKKLRDFAKI 482 Query: 431 LKTHG--LHVDAEEV--LTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFG 486 + G E++ L L ++ A P + + + R A+ HFG Sbjct: 483 VLLMGKRFKGSVEQIRPLQLQQLLDSFKDDPAYPV--ISTMMLRSMQKAKYDPRCLGHFG 540 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP----QDEITVQ-----MAERRRL 537 L LE Y +TSPIR+Y D+I HR+L G TA P QDE+ ++ +ER R Sbjct: 541 LALEEYTHFTSPIRRYPDLIVHRMLHKYGFG-TALDPEMMKQDELKMEEYGKLTSERERA 599 Query: 538 NRMAERDVGDWLYARFLKDKAG 559 AER+V D A +++D+ G Sbjct: 600 AIEAEREVEDMKKAEYMEDQIG 621 >UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZ06_9BACT Length = 759 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 125/453 (27%), Positives = 208/453 (45%), Gaps = 22/453 (4%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D +L+ VTID + +D DDA+ + D + L + IAD +A++ GS LD+ R Sbjct: 284 RRDFRSLEIVTIDGDTAKDFDDAISIEEEDDGTVTLGIHIADVSAYVLPGSALDREGFAR 343 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 A + Y P +PM P LS+ + SL R + + +G + + + I S+ Sbjct: 344 ATSVYFPDRVLPMFPEVLSNGVLSLNPETDRLARSVTARIDREGQVL-SWTLDRSVIRSR 402 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 ++ Y +V L TG+ P+ ++ + ++ + R + D P+ +L Sbjct: 403 MRMTYSEVHRAL--TGEPSPDYLPYENRLHTMWRVASLLRKRRMGKGSLDFDLPEPEIVL 460 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 +GE +DI+ PR ++++++EE M+ AN A LR++LG ++ H P + L Sbjct: 461 DLRGEPVDILRSPRYLSHQLIEEFMLLANTLVATRLRERLGTALFRAHETPTPEKIENLY 520 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRR--FQSFAEISTEPGP--H 484 + L + GL EV+T ++ E P L+ + +S + +P P H Sbjct: 521 SFLASLGLPFTKPEVVTPRDLSRILEETKGSP---LEHPVHYSVLRSLKQARYDPSPLGH 577 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLK-AVIKGETATRPQ--DEITVQMAERRRLNRMA 541 FGL Y +TSPIR+Y D+I HRLL A G + P + +ER R A Sbjct: 578 FGLAFPDYTHFTSPIRRYPDLIVHRLLDLATSSGMESLLPGSLSAVAQHCSERERKATEA 637 Query: 542 ERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 ER D+ RF+ G F I ++ G+ V L IP +H + + Sbjct: 638 ERMAIDFKKVRFISKHLGES--FDGRITGVASFGLFVELSPFFVEGMIP---IHMLGRDY 692 Query: 602 VCSQENGTVQIKGE---TVYKVTDVIDVTIAEV 631 +E+ QI+G + V D + VT+A+V Sbjct: 693 YEYREDRH-QIRGSRTGRTFSVGDAVRVTVAKV 724 >UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB22_MYCGA Length = 707 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 150/529 (28%), Positives = 244/529 (46%), Gaps = 46/529 (8%) Query: 84 TRFVGKVQGKNDRLAIVPDHP-LLKDAIPCRAARGLNHEFKEGD---WAVAEMRRHPLKG 139 TR+VG + D ++PD P L+ + R E KE D + + E+++ ++ Sbjct: 150 TRYVGTYEDTGDEYLVLPDDPKLIYKVVLDRHYL----ELKEHDRILFEIIEIKQGVIR- 204 Query: 140 DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGL--VRED 191 A L + I +D + H +E + E LD+ +R+D Sbjct: 205 -----AALVKKIGSKEDLGIDIDAIAYNHLIEPTFSQEIINEAKSLKYELDDHQKEIRKD 259 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 L L F+TID AS D+DDA++ K + DD L VAIAD ++ +D+ A+ +A + Sbjct: 260 LRDLSFLTIDPASALDLDDAIYVKKIDDDSYNLKVAIADVCHYVKFDGPMDRGARTKATS 319 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 YL IPMLP ELS+DLCSL + V+ + + G I + EF+ A I S + Sbjct: 320 VYLANKVIPMLPEELSNDLCSLNPGVDKFVIVGDLMIDGTGKIMSH-EFYPAIINSHKRF 378 Query: 312 VYDQVSDWLENTGDWQ---PESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 Y++V+++ T D + P + ++ R+LA+I +R R + D + L Sbjct: 379 SYEEVNEYFSATNDLKDVDPSIRQMLDEARVLAKILRRMKIKR---GYLQFDVDETSIEL 435 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAAN--ICAARVLRDKLGFGIYNVHMGFDPANADA 426 ++ E ++I+ +P A ++E+ M+AAN +C + L F IY VH ++ Sbjct: 436 DDRFEPINILKKPHGEAQEMIEDFMVAANEAVCLF-ASKYNLDF-IYRVHPKPAVHKLNS 493 Query: 427 LAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPH 484 A +T + D + + D L D + ++ + R + A S E H Sbjct: 494 FANWARTLEFEIFGDLNSIKSTDIQKWLTNNADHKQIKLINKLLLRSMNKAYYSVENTRH 553 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLL-KAVIKGETATRPQ-DEITVQMAERRRL-NRM- 540 F L + Y +TSPIR+Y D I HR+L V + T Q +E+ + E L N+ Sbjct: 554 FSLASKHYTHFTSPIRRYADNIVHRILWMFVFDPQAYTDLQRNELKSHLVEWCDLINKQE 613 Query: 541 -----AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 ERDV +LY +++ + G + I I+ GM V L DNG Sbjct: 614 LVAVDCERDVNAFLYVKYMSNFLG-NWYHNVTINAITNFGMFVEL-DNG 660 >UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RFP5_9FIRM Length = 716 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 153/587 (26%), Positives = 264/587 (44%), Gaps = 48/587 (8%) Query: 24 GVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAV--IHSEKERESAEPEELVEP 81 G ++ KGFGF+E D + S+++ P +++ + D + A +++ RE E E+++ Sbjct: 79 GKLRVNPKGFGFVEYD-EGSFYVAPDKLRFALDQDEVYARSWTNNDGSRE-GEIVEVIKH 136 Query: 82 FLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV---AEMRRHPLK 138 + VG V+ + R +PD + R + N++ D+ + +++ H Sbjct: 137 NINNVVGVVKMREGRKYFLPDADIYN-----RPFKITNYD----DFHLVHDSKVLVHIDS 187 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVRE 190 + + + I + D + L ++ E P V E++ E R+ Sbjct: 188 YGSTLKCHIEKEIGYKYDPGIDILSILLEKDITPEFPREVMEEVMQIPEALQSKEYANRK 247 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL L +TID D+DDA+ + + +L V IAD + ++ GS LDK A R Sbjct: 248 DLRKLLTITIDGEDARDLDDAISIEK-TEQGYRLYVHIADVSHYVTAGSALDKEAYARGT 306 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + Y+ +PMLP LS+ +CSL R L C M ++ GT+ D + + + I S + Sbjct: 307 SVYVVDRVVPMLPHALSNGICSLNPKVDRCTLTCMMEINRKGTVID-YQIYPSVINSDER 365 Query: 311 LVYDQVSDWLENTGDWQ-----PESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 + Y V+ LE GD Q P + +++L+ I ++R R + D + + Sbjct: 366 MTYTAVNAILE--GDEQVQKQYPHLLKMCLDMKVLSGIIRKR---REKLGAIDFDTNEAK 420 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 ++ EKG+ +DIV R+ A RI+E+ MIAAN A +R ++ +H +P Sbjct: 421 ILVNEKGKPVDIVLRERKEAERIIEDFMIAANETVAAHVRWLEIPSMFRIHEQPEPKRIR 480 Query: 426 ALAALLKTHGLHVDA--EEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGP 483 A + KT G + V L+ L + + R A Sbjct: 481 EFARIAKTLGYTFTGGIQNVYPAQLQAMLKEAKGENNYSVLSTFMLRSMQKARYDRRCIG 540 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-----KGETATRPQ---DEITVQMAERR 535 HFGL L+ Y +TSPIR+Y D++ HR+L+ E R + ++ Q +ER Sbjct: 541 HFGLALKNYLHFTSPIRRYPDLVVHRMLRKYFFEGLQDSEKMARDEQWIEDAAYQASERE 600 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 R AER V D A +++ + D ++ I I+R G+ V L + Sbjct: 601 RNAIDAERAVEDMKKAEYMEGR--IDRQYDGVISGITRFGLFVELAN 645 >UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH0_9FIRM Length = 713 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 154/585 (26%), Positives = 267/585 (45%), Gaps = 41/585 (7%) Query: 24 GVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPEELVEP 81 G V + FGF+ + + F+ ++K + GD +IA I ++ E+ SA E L Sbjct: 69 GKVATLSRTFGFVTNLATGEDCFVSGGKLKGAVPGDTVIAREIAAKTEQRSATAEVLAVL 128 Query: 82 FLTR--FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP--- 136 ++ F G + + L + PD P + + KEGD + +R+ Sbjct: 129 DVSEELFGGVIVKEGKMLKVQPDSL----GCPPLTILKVKEQIKEGDKVLFSIRKRGEHH 184 Query: 137 ---------LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGL 187 + G + T+ ++ +P + N K+ + V E + Sbjct: 185 SEHIVDIVRVLGSSEYAKSATEAYLIQNN--IPVDFSEEALNQAKQYVNAVIDE--KQTA 240 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL L TID A T+D+DDA+ + + +L V IAD + ++ EGS LD A Sbjct: 241 KRLDLRDLPIFTIDGADTKDIDDAISIER-TEGGYKLGVHIADVSHYVTEGSPLDNDAFE 299 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + Y+ IPMLP+ELS+ +CSL R +C M +S GT++ +F I S Sbjct: 300 RGTSVYIADKVIPMLPKELSNGICSLNPGVDRLAFSCLMEISDKGTVK-KYKFAKTVIRS 358 Query: 308 KAKLVYDQVSDWLENTGDWQPESEA--IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 + + VY +V+ L+ T + Q + + + + + ++ ++ Q + R + + + Sbjct: 359 RVQGVYSEVNSILDGTANAQIKRKYKDVIDCIPVMNELAQILIKKRKDRGAPDIKSSESK 418 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV-LRDKLGFGIYNVHMGFDPANA 424 I E G +DI + ++ I+EE M+ AN AA+V ++ ++ F +Y VH Sbjct: 419 VICDENGICIDIKPRIQGVSEGIIEEFMLMANNSAAKVGMKKEIPF-VYRVHENPPAEKI 477 Query: 425 DALAALLKTHGLH-VDAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEISTEPG 482 ++L L+ G++ + E F KL E P + +RI R + A+ S +P Sbjct: 478 ESLKTTLEALGVNPLGINEKAEAKNFAKLLEETADDPKNIIINRIVLRTMAKAKYSEQPI 537 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD---EITVQMAERRRLNR 539 HFGL ++ YA +TSPIR+Y D+ HR+L + + A + + E +V+ A + Sbjct: 538 GHFGLVMKEYAHFTSPIRRYADLSIHRILTDYVSRKGADKLKKKYGEFSVKAAAQATKTE 597 Query: 540 M----AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + AER D+ A ++K G + F I + G+ V L Sbjct: 598 LSAVAAERSCEDFYAAEYMKKHIGEE--FDGIISGVIGSGLFVEL 640 >UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU Length = 756 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 179/657 (27%), Positives = 289/657 (43%), Gaps = 54/657 (8%) Query: 16 HSQTPRAEGVVKAT----EKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVI--HSEK 68 H P G++ T ++GFGF+ V D +K FI P +K + D ++ + HS++ Sbjct: 57 HYYLPNQFGMILGTLTINKRGFGFVVVEDQEKDIFISPDDLKDAFNKDTVLVELKKHSDE 116 Query: 69 ERESAEPEELVEPFLTRFVGKVQ-GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 ER +++ TR VG+++ GK D V D P+ P R H G Sbjct: 117 ERPEGRVIRVIKRGQTRLVGEIKKGKRDCFVDVDD-PMFDK--PIFVDRAHLHGAMPGHK 173 Query: 128 AVAEMRRHP--LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD- 184 E++ + LKGD + + + +D + + H+ E P V ++ + Sbjct: 174 VQVEIKTYKPILKGD------VVKILGHRNDPGIDILSIVYEHDAPVEFPQAVYDQIENI 227 Query: 185 ----EGL---VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 EG+ R DL VTID +D+DD + K L + L V IAD + ++ E Sbjct: 228 PDSLEGIDIGQRIDLRDEVVVTIDGDDAKDLDDGISLKKLDNGHYHLGVHIADVSYYVTE 287 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S LDK A R + YL IPMLP +LS+ +CSL + R ++C M + +G + ++ Sbjct: 288 ESPLDKEAFARGTSIYLADRVIPMLPHKLSNGICSLNPHVDRFTISCFMEIDENGEVVEH 347 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL---LAQICQRRGEWRHNH 354 + A I S ++ Y V+ L+ Q + + + L LA I Q + R Sbjct: 348 -DIVPAVINSTERMTYTNVNKILDGDQTLQLQYSHVKDLFFLMQELAMILQAKKARR--G 404 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR-DKLGFGIY 413 A+ F D + + ++ KG D+V R ++RI+EE M+ AN A + +L F IY Sbjct: 405 AIDF-DVKEAKVLVDSKGNTTDVVLRERGASDRIIEEFMLLANETVAEHFKWLELPF-IY 462 Query: 414 NVHMGFDPANADALAALLKTHGLHVDA--EEVLTLDGFCKLRRELDAQPTGFLDSRIRRF 471 VH P + + KT G + E V + + D + + + R Sbjct: 463 RVHENPKPKKLLQFSGIAKTLGYTIKGSLENVYPGELSNIIEVSKDTPEHTIIATLLLRC 522 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV-----IKGETATRPQD- 525 A + HFGL E Y +TSPIR+Y D+I HRL++ + T Q+ Sbjct: 523 MQKARYDEQCLGHFGLADEYYTHFTSPIRRYPDLIVHRLIRKYMFENRLDRRTIMHYQEL 582 Query: 526 --EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 EI +Q + R R M ER+V D A F++ + G + F I ++ G V L DN Sbjct: 583 MPEIALQTSAREREAIMIEREVDDMKIAEFMEKQIGEE--FEGIISSVTNFGFFVEL-DN 639 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSI 638 + L D+ E I T V+K++D + V ++ + +S+ Sbjct: 640 TIDGLVHVTDL---TDDFYFFDEKNIRYIGQRTGKVFKMSDRVKVRVSSASKKDKSV 693 >UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6K9_GRAFK Length = 732 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 152/611 (24%), Positives = 273/611 (44%), Gaps = 44/611 (7%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEKER 70 K ++ S GV+ T KG+G++ V+ FI + GD + + + + R Sbjct: 71 KFKIESNKNYYTGVLDLTTKGYGYVMVEEFADDIFIANKDLNTAFDGDTVEIYVFNRRRR 130 Query: 71 ESAEPE--ELVEPFLTRFVGKVQGKND-RLAIVPDHPLLKDA-IPCRAARGLNHEFKEGD 126 + +E E ++++ T FVG +Q K D ++ D + D IP G + GD Sbjct: 131 KRSEGEITKIIKRKRTEFVGTLQQKKDFGFVVIDDKSMHTDFFIPGNKLNGA----ENGD 186 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA--TEMLD 184 V E P K D S ++T+ + +H LA++ L + P+ V +D Sbjct: 187 KVVVEFEEWPKKAD-SPLGKITRVLGTPGEHHTEIHSILAQYGLPHDFPEEVEEFANKID 245 Query: 185 EGLVREDLT-------ALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 + +E+++ L F TID +D DDAL + L + ++ + IAD + ++ Sbjct: 246 TSINKEEISKRRDMRDVLTF-TIDPKDAKDFDDALSFEKLKNGNYEIGIHIADVSHYLQP 304 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 G+ LD+ A RA + YL +PMLP LS++ CSLR E + + + + T+++ Sbjct: 305 GTILDEEAYERATSVYLVDRVVPMLPEILSNNACSLRPKEEKFTFSAVFEIDDNATVKN- 363 Query: 298 IEFFAATIE-SKAKLVYDQVSDWLENTGDWQPES-----------EAIAEQVRLLAQICQ 345 ++F T+ S + Y++ LE P+ A+ E V L + + Sbjct: 364 -QWFGRTVTYSDERFAYEEAQHILETGTGTIPDDVSIRNHAYSVRGALIEAVVTLNTLAK 422 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + R + D+ + +F L E + + + + AN+++EE M+ AN A + Sbjct: 423 KMRTRRMKDGAISFDKVEVKFNLNEDNNPVGVFFKTAKDANKLIEEFMLLANRKVAEYIG 482 Query: 406 D---KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDA-QP 460 K F +Y H D +L ++ G ++ ++ T KL ++ + Sbjct: 483 KQSPKKTF-VYRNHDEPDDQKLASLQTIVGRFGHKLNLKDRSSTTSSLNKLLEDVQGRKE 541 Query: 461 TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-ET 519 +D+ R S A TE H+GL + Y +TSPIR+Y D++ HRLL+ + G ++ Sbjct: 542 QNMVDTLAIRTMSKAYYGTESIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDGAKS 601 Query: 520 ATRPQDEITV-QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 A+ + E +E L AERD ++ +F++D + F I ++ G+ V Sbjct: 602 ASEEEYETKCHHSSEMENLATNAERDSIKYMQVKFMQDHENEE--FLGVISGVTEWGIFV 659 Query: 579 RLVDNGAIAFI 589 +V+N I Sbjct: 660 EIVENKCEGMI 670 >UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQL2_AKKM8 Length = 756 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 204/459 (44%), Gaps = 42/459 (9%) Query: 145 AELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLVREDLTALD 196 ++ + + + D+ V + ++ L E P V E+ E RED T Sbjct: 222 GKIVEVLGYPDEPHVDMEAVIRKYGLSVEFPASVLRELETLPQTPSPGELARREDWTDRT 281 Query: 197 FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPG 256 +TID AS D DDA+ A P L V IAD + ++ G LD A R + YLP Sbjct: 282 VITIDPASARDFDDAISITATPSG-WTLAVHIADVSHFVKPGGSLDGEALRRGNSTYLPD 340 Query: 257 FNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQV 316 +PMLP LSDDLCSLR + VR C M G + F A I SKA+L Y + Sbjct: 341 RVLPMLPHRLSDDLCSLRPDVVRLTKVCEMKFDKKGKML-RARFADAFIRSKARLTYQEA 399 Query: 317 SDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLD 376 L+ G+ + E + + LA I +R R+ + D P+ R ++ + G V Sbjct: 400 FAMLK--GNDKGEVPSTVREAWNLASILRRN---RYAKGALDLDFPEVRAVMDKDGRVTG 454 Query: 377 IVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHG- 435 I+ E +++++EE M+AAN A L++ IY VH D A L + +G Sbjct: 455 IITEEYDESHQLIEECMLAANEAVALALKNGNRPTIYRVHEEPDSAKLFEFGQLCRLYGH 514 Query: 436 -LH-VDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSF-AEISTEPGPHFGLGLEAY 492 +H +D + L +L + + P L A TEP H+GL Y Sbjct: 515 PVHDIDQRQYLN-----ELMKSIKGSPDEQLLKLALLKSLMRARYDTEPLGHYGLATPNY 569 Query: 493 ATWTSPIRKYGDMINHRLLKAVI-------KGETATRPQDEITVQMAERRRLNRMAERDV 545 +TSPIR+Y D++ HR L ++ KG +T +E ++E R++ AE+D Sbjct: 570 CHFTSPIRRYADLVVHRSLNPLLANPPKGAKGAGSTGRLEEDAEHISETERISASAEKDA 629 Query: 546 G-----DWLYARFLKDKAG------TDTRFAAEIVDISR 573 +WL + D T+TR +++I R Sbjct: 630 NRMKLFEWLEGQCYADHPEVHEALVTETRHFGVLLEIPR 668 >UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7Z3_9PLAN Length = 955 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 169/647 (26%), Positives = 284/647 (43%), Gaps = 52/647 (8%) Query: 24 GVVKATEKGFGF---LEV----DAQKSYFIPPPQMKKVMHGD--RIIAVIHSEKERESAE 74 G K GFGF L+V D + FIP + +GD R+ V R+S E Sbjct: 202 GKFKRAAAGFGFVRPLDVTSRGDRTQDIFIPQNASQDAANGDIVRVRLVSGGRSLRKSGE 261 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRR 134 E++E +FVG Q + + D + A+P GD V EM R Sbjct: 262 IVEILERDTHQFVGVYQEQRGSGVVEVDGRVF--AVPISVGDPGAKGAAPGDKVVIEMVR 319 Query: 135 HPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV------ATEMLDEGLV 188 P A +T+ + + + + L + P+ V E DE + Sbjct: 320 FPSHTHEG-EAVITEVLGARGTPGIDTLSIMREYELPEAFPEAVLAASREEAEKFDESIG 378 Query: 189 -REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R D T +TID D DDA+ L QL V IAD + ++ S LD+ A+ Sbjct: 379 DRRDFTKTTIITIDPVDARDFDDAISLTKLESGNYQLGVHIADVSHFVKPKSVLDREARD 438 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 RA + YLP +PMLP +S++L SL+ ++VR + S +GT + EF+ + I+S Sbjct: 439 RATSVYLPDRVLPMLPEIISNNLASLQPDKVRYAQTAIIEFSPEGTPLHS-EFYLSAIKS 497 Query: 308 KAKLVYDQVSDWLENTGDW----QPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 + Y++V D+L + W +P+ + + LA I +RR R L P+ Sbjct: 498 CRRFTYEEVDDYLADRQAWKKKLKPQVHELLGVMHELAMILRRRRLERGAIELSL---PE 554 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + L +KGEV +++I+EE M+AAN AR L +K + +H D Sbjct: 555 TKIDLDKKGEVSGAHLSKNTESHQIIEEFMLAANEAVARHLNEKELPFLRRIHENPDLRK 614 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRR---ELDAQPTGF-LDSRIRRFQSFAEIST 479 L ++ G+ D +L+ +++R E+ P ++ + R A S Sbjct: 615 LQVLTKFVRELGIECD-----SLESRFEIKRVIKEVAGAPEEHAVNYAVLRAMQKAIYSP 669 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM------AE 533 H+ L E Y +TSPIR+Y D+ HR+L+++I G+ +P + Q+ +E Sbjct: 670 AVEGHYALHSEHYCHFTSPIRRYPDLTIHRMLRSLIHGK---KPAADFASQVLLAEHCSE 726 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R + + AERD+ +L + G++ A I + G+ V +D A I Sbjct: 727 REQRAQAAERDLIKVKLLGYLSKRVGSE--MDAVITGVEEFGIFVMGIDLPAEGLI---H 781 Query: 594 LHAVRDELVC--SQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + ++ D+ S + + +++ DV+ V++A+V ++ R + Sbjct: 782 IQSLEDDYYKFDSDTHSLTGRRAGNRFRLGDVLRVSVAKVDVDRREL 828 >UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ribonuclease II) n=2 Tax=Mycoplasma RepID=A5IXZ7_MYCAP Length = 729 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 145/591 (24%), Positives = 271/591 (45%), Gaps = 42/591 (7%) Query: 28 ATEKGFGFLEVD------AQKSYFIPPPQMKKVMHGDRIIA----VIHSEKERESAEPEE 77 A+E F++V+ + SYF+ ++ D + A I + R A+ ++ Sbjct: 74 ASEGKCAFVDVEELSKNGTKSSYFVSSNNFNTALNNDIVEADVFEPISPDNNRTFAKVKK 133 Query: 78 LVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPL 137 ++E +G + N + P P+ K+ + + E + D VAE+ + Sbjct: 134 IIERRCKTLIGVLDNVNGFVTFKPIEPIYKNT--SFRIKNIASEARVLDVVVAEIINYE- 190 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA---TEMLDEGLVREDLTA 194 +R+ + + IT +D N+ +E P V + + E + EDL+ Sbjct: 191 --NRNKEINIIKRITDVNDPMAYVKSLEEARNVPREFPAEVNEYIQKFIPENIKNEDLSM 248 Query: 195 LD------FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 VTID +ST+D DDA+ + ++ +L V IAD ++ E + LD A R Sbjct: 249 RTDLRNDLVVTIDGSSTKDFDDAISVVKIDENTYELGVHIADVAYYVKENTPLDDEALKR 308 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG-TIEDNIEFFAATIES 307 + YL +PMLP +LS+ +CSL NE R ++C ++ G +IE I + I+S Sbjct: 309 GTSIYLLNEVVPMLPFKLSNGICSLNPNEERLTISCITKINKLGQSIETKI--VPSVIKS 366 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 K +L Y++V++++ + D+ E + + + ++ ++ Q E+++ + + + Sbjct: 367 KYRLTYERVNEFINESKDF--EDKELNKMLKNAYELSQIIREFKNKQGYIDFEIQEPHIE 424 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 L G VLDI E + +++E+ M+ AN A+ + + +Y +H + Sbjct: 425 LDSDGRVLDISVEKTGESEKMIEDFMVRANEEVAKFITNSKLPMMYRIHEVPSEEKIEYF 484 Query: 428 AALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHF 485 +LK+ ++V + +T F K+ ++++Q FL R A S + HF Sbjct: 485 LEVLKSLKINVSLNRKHITPLTFQKIINQINSQRNDEFLKMLFLRTMQKAVYSPDNIGHF 544 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMA---- 541 GL E Y +TSPIR+Y D+I HR+L + + + DE + + +N + Sbjct: 545 GLASECYCHFTSPIRRYPDVIVHRVLWDFVFKKQLNKV-DEFAANLQKIAAMNSASEENA 603 Query: 542 ---ERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 ERDV D +A + K K ++ F ++ I++ GM ++ DN A + Sbjct: 604 VQLERDVNDLKFAEYFKSKINSE--FEGQVFGITKFGMFIQF-DNKTDAMV 651 >UniRef50_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVL2_RUBXD Length = 535 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 148/495 (29%), Positives = 222/495 (44%), Gaps = 44/495 (8%) Query: 111 PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL 170 P AR L + GD + R KG S E+ + I D + A + Sbjct: 24 PILVARKLRRGAEAGDLVLVRARER--KG--SLRGEVVRVIGPSSDPRNVYEALFASIGV 79 Query: 171 EKEAPDGVATEMLDEGLV------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 + P GV E E + R DL L VTID +D DDA+ + D +L Sbjct: 80 SRSFPRGVEEEA--EAVAGRSFGERRDLRRLPTVTIDGEDAKDFDDAI-SILREDGGYRL 136 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD T ++ G LD+ A R + YLPG PMLP LS D+CSLR + R + Sbjct: 137 WVHIADVTHYVDPGGALDRQALYRGNSVYLPGTVAPMLPARLSADVCSLRPHADRAAVTV 196 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDW-QPESEAIA-EQVRLLAQ 342 +++S +G + + + + I S A+L Y+ V +LE G+ QPE A E R L Sbjct: 197 EISVSGEGEVR-GWKVYRSLICSDARLTYEAVDAFLEGRGEIEQPELVRTAFELSRRLKT 255 Query: 343 ICQRRGEWRHNHALVFKDR-PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 RG+ L + R P+Y + E+G + P A ++EE MI AN+C A Sbjct: 256 NAAVRGK------LELESREPEYE--VDEEGVPVAASMRPSTPARELIEELMILANVCVA 307 Query: 402 RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT 461 R LR + G ++ VH P + + LA L G+ V+ T + + R L ++ Sbjct: 308 RELRRRRG-AVFRVHERPSPEDLELLAERLAAVGVRVEP----TPENLGTIARMLKSRAL 362 Query: 462 GFLDSRIRRFQSFAEISTEPG--PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 G+L R S PG H+GL LE Y +TSPIR+Y D++ HR L G+ Sbjct: 363 GYLVLR-----SIPRALYSPGNVGHYGLALEDYTHFTSPIRRYADVLVHRAL----LGDE 413 Query: 520 ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 E+ ++ER + + ER ++ ++D+ G F +V + G+ V Sbjct: 414 LPENLPEVAEHISEREWQSMICERTADEYTLMWLMRDRVGEV--FEGTVVSTTSFGLFVE 471 Query: 580 LVDNGAIAFIPAPFL 594 + + GA + A L Sbjct: 472 M-ETGATGLVHASKL 485 >UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID=RNR1_LACLA Length = 817 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 159/595 (26%), Positives = 259/595 (43%), Gaps = 50/595 (8%) Query: 24 GVVKATEKGFGFLEVDAQK-SYFIPPPQMKKVMHGDRIIAVIHSEK---ERESAEPE--E 77 G+ +A GFGF+ +DA++ F+ Q + GD + I + SAE E Sbjct: 74 GIFRANAAGFGFVSIDAEEPDVFVARGQTAFALDGDEVFIEIDKNANALKGTSAEGHVVE 133 Query: 78 LVEPFLTRFVGKVQGKND----RLAIVPDHPLLKDAIPCRA---ARGLNHEFKEGDWAVA 130 ++ + + VG ND + ++ IP R GL E K Sbjct: 134 IIRHDVHQVVGTFVALNDDEKEQTGLIGFVKSRNKKIPYRVYLENEGLIPENKA--IVRV 191 Query: 131 EMRRHPLKG-DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP-------DGVATEM 182 E+ +P K ++ +T+ I DD + LA ++ E P + V E+ Sbjct: 192 EITHYPDKEFPQTMQGLVTEIIGQADDQGIDVLEVLASMDIVSEFPKEVLDQAEAVPEEV 251 Query: 183 LDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + +V R D TID A +D+DDA+ AK L + +L V IAD + ++ E S L Sbjct: 252 PENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPL 311 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK A R + Y+ +PMLP LS+ +CSL R +C M +S +G + N + Sbjct: 312 DKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISPEGRV-INYQIS 370 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 + I++ ++ YD V+ + IA+ V+++ ++ R + D Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYNVHMGFD 420 + + I+ EKG ++I R IA R++E M+ AN A L F IY +H + Sbjct: 431 VEAKIIVNEKGLPIEIRKRTRGIAERMIESFMLEANETVATHFEAHGLPF-IYRIH---E 486 Query: 421 PANADALAALL---KTHGLHVDAE----EVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQ 472 AD L + T G+ ++ + L F K ++ QP L + + R Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMK---KIKGQPGEMVLSTMLLRSM 543 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD------- 525 A S HFGL E Y +TSPIR+Y D++ HRL++ + +G+T Sbjct: 544 QQARYSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTPANILQKWEDKIP 603 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 EI + R R AER+V A F+++ G + + I ++R GM + L Sbjct: 604 EIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVGEE--YEGIIASVTRFGMFIEL 656 >UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J9E8_BLASP Length = 649 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 155/649 (23%), Positives = 283/649 (43%), Gaps = 48/649 (7%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEP 75 S A G + T G+ F+ + K FIP + + + GD + + K + E Sbjct: 14 SNNSLAIGFINITSYGYAFVNIKGFPKDIFIPKKKTNRAIEGDLVQVRFKNRKSGKKIEG 73 Query: 76 E--ELVEPFLTRFVGKVQGKNDR-LAIVPDHPLLKDA-IPCRAARGLNHEFKEGDWAVAE 131 E ++++ F+G ++ K+ L IV ++ + D IP +G H K + E Sbjct: 74 EVIKILKRKRKNFIGILKMKSQYGLVIVHNNTIHVDILIPINEFKGYQHNEK----VLVE 129 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGL---- 187 + + P K ++ ++ + ++ + L+ + + E P V E + L Sbjct: 130 IVKWP-KNSKNPLGKIIKGFGVSGEYKTEIFSLLSEYGISYEFPKEVEKEAKEIVLKKNS 188 Query: 188 ---VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 +R D+ ++ TID +D+DDAL + L + ++ + IAD + ++ EGS LDK Sbjct: 189 DLNMRRDMRNINTFTIDPLDAKDIDDALSIRKLNSNTWEIGIHIADVSHYVKEGSFLDKE 248 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A RA + Y G IPMLP+ LS+DLCSL + + + ++ G I + +F T Sbjct: 249 AYTRANSIYFVGKVIPMLPKILSNDLCSLHPEKDKLSFSSIFNMNNQGKILKS--WFGKT 306 Query: 305 -IESKAKLVYDQVSDWLE-NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 I S + Y++V +E GD+ + + ++L + + G + ++ Sbjct: 307 IIRSNRRFTYEEVQKIIERKKGDYHEDISTLLFFSKILTKNRLKNGA-------ISIEKV 359 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG------FGIYNVH 416 + +F L +K + E A+R++EE M+ AN + L IY VH Sbjct: 360 EIKFHLDKKNNPTRLYLEKSNEAHRLIEEFMLLANRKISEFFSLNLDGKPSNRTYIYRVH 419 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFA 475 D L +++ G +D + + T L + + + +++ I R S A Sbjct: 420 DEPDFQKIFVLKKIIEPLGYFLDLKNIKT--SINHLLKSIQGKSEQNMIENLILRTMSKA 477 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET----ATRPQDEITVQM 531 + ST+ H+GL Y +TSPIR+Y D+I HRLL + + + +E + Sbjct: 478 KYSTKNIGHYGLSFIYYTHFTSPIRRYSDIIAHRLLNYYLTKKNNKLKSIEFYEEQSKHC 537 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 +E+ RL AER+ +L +++K G + F I + + + L+ I Sbjct: 538 SEKERLAIDAEREFLKYLQVKYIKKYLGKE--FEGIITGFTEWSVYIDLLVFQTEGMIR- 594 Query: 592 PFLHAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVRMETRSI 638 L ++++ N I K VY + D I V + + +E + I Sbjct: 595 --LRDIQEDFYTLHSNNYSIIGRKKRRVYYLGDRIKVKLIDANIEKKQI 641 >UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribonucleases n=4 Tax=Mollicutes RepID=Q2ST22_MYCCT Length = 704 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 147/650 (22%), Positives = 289/650 (44%), Gaps = 48/650 (7%) Query: 23 EGVVKATEKGFGFLEVDAQK----SYFIPPPQMKKVMHGDRIIAVIHSEKE-RESAEPEE 77 +G +K KGFGF+ D K +FI + +H D ++ ++ E++ R A + Sbjct: 63 KGTIKLNPKGFGFIN-DINKINDEDHFIAGVDLNNSIHQDEVVYILKQEEDNRLKAIVID 121 Query: 78 LVEPFLTRFVGKVQGKNDR--LAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 L++ +G++ D+ L +P+ K R +EFK ++ + + + Sbjct: 122 LIKRNKVYLIGEINRSFDKRFLDFIPND---KSFDSFRFVIVNKNEFKYEEFNIIKAKII 178 Query: 136 PLKGDRSFYAELTQYI---TFGDDHFVPW------WVTLARHNLEKEAPDGVATEMLDEG 186 K +R + L + I D + + + L+ ++T+ L++ Sbjct: 179 SCK-ERKIFIRLIRIIGNSKKASDRILAIAEEFDIKTSFDKQTLDNAKQINLSTDKLEKE 237 Query: 187 LVREDLTAL---DFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 ++ +L VTID ++D+DDA+ + L ++ +L VAIAD + ++ + LDK Sbjct: 238 FLKRQNNSLVNKTIVTIDGIDSKDLDDAICVEKLENNNYKLFVAIADVSYFVRYKTSLDK 297 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A +R + YL IPMLP LSDDLCSL N + V C M + + N + + + Sbjct: 298 EALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFVCEMEFDNNANML-NKKVYES 356 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I SKA+L YD+V+++ + T W + + + + + ++ ++ + + D + Sbjct: 357 VIISKARLNYDEVNNYFK-TKTWTHDDKT-KKMLDIAYELYKKLENLKAKKGTISFDVRE 414 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + IL + V+DI + A +++E+ M++ N A ++ K +Y H D Sbjct: 415 PKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVAELIYQKDLPFLYRNHNKPDEDE 474 Query: 424 ADALAALLKTHGLHVDAEEVLTLD------GFCKLRREL-DAQPTGFLDSRIRRFQSFAE 476 LKT G++ LD +++ ++ D L+ + R+ A+ Sbjct: 475 LINWYKSLKTFGINPKLTNKQVLDPIFINHTLSQIKEQIKDETEVELLNISLLRYMDKAK 534 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--------KGETATRPQDEIT 528 E HFGL + Y +TSPIR+Y D++ HR LK + E ++++ Sbjct: 535 YGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQYLITKDLEKTSLENNANYVNKVS 594 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + + + ER+V ++ +K + + A I + + G+ ++L DN Sbjct: 595 NIINDTETKSVECEREVIKACMCEYMLNKV--NNTYTATISAVLKFGIFIQL-DNLVEGL 651 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + +++ +LV + N + T Y++ + V + V ++ R+I Sbjct: 652 VHISNMNS---DLVYDETNRILIKPDNTYYRMGQKVKVKLINVDIKKRTI 698 >UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCCDEB Length = 900 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 163/646 (25%), Positives = 270/646 (41%), Gaps = 44/646 (6%) Query: 24 GVVKATEKGFGFLEVDAQKS-----YFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEEL 78 G + + KGFGF+ DA+++ F+P + MHGDR++A + + A E+ Sbjct: 76 GRLSMSPKGFGFIIPDARENEEETDVFVPGAALATAMHGDRVVARVTPSESPGRAREGEI 135 Query: 79 VEPFL---TRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF---KEGDWAVAEM 132 + + T VG + + PD + I L +F K G V E+ Sbjct: 136 IRILVRANTHIVGTFERSKAFGFVTPDSTKIGRDIFV-----LKKDFGGAKTGSKVVVEI 190 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA--------TEMLD 184 + P + RS + + + D V + ++L++ P VA + + Sbjct: 191 TKWP-EARRSAEGRVIEVLGKTGDPGVDVLAVMRAYDLDENFPPDVAAAAAQCPENPLPE 249 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 E R D VTID T+D+DD ++A D + L V IAD + ++ G LD Sbjct: 250 EYAGRRDRRDFPIVTIDGEDTKDIDDGIYAYER-DGEFFLGVYIADVSHYVRAGEPLDVE 308 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A R + YL IPMLP+ELS+ +CSL R +AC M + ADG ++ + E Sbjct: 309 AARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMQIGADGEVK-SYEIVPCV 367 Query: 305 IESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 I +L Y V+ L + ++E I + L ++ + RH + + P+ Sbjct: 368 IHVARRLTYTLVNKVLAGEEPFVSDNEDIRPMLETLRRLREVLRGKRHRRGSIDFELPEI 427 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 + L G + + I I+EE M+AAN AR + K +Y VH Sbjct: 428 KVKLDAAGHPIALERRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVHEAPVSEKI 487 Query: 425 DALAALLKTHGLHVDAEE---VLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEP 481 + +LL GL ++ +E V + D L R A + + R A +T Sbjct: 488 ERFQSLLAALGLRLNVDEDGKVRSRDIQQVLDRVKGAPEERIIGAVALRSMQQARYATAS 547 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGETATRPQDEITVQMAE------- 533 HFGL Y +TSPIR+Y D++ HRLL+ G ++ + ++E Sbjct: 548 LGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIPAEKRERLRTVLSEAAEHSSA 607 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R R+ AER+ D ++ G F I ++ G+ V L +NG + Sbjct: 608 RERIAVEAERETTDMKKIEYMAQFVGET--FEGVISGVTAFGIFVEL-ENGVEGLVHVST 664 Query: 594 LHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + V D +E V + Y++ D + + I ++ R++ Sbjct: 665 M--VNDYYSYVEEQYAMVGERTGARYRLGDAVTIIITRADVQARTL 708 >UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_SPHWW Length = 769 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 173/578 (29%), Positives = 251/578 (43%), Gaps = 79/578 (13%) Query: 47 PPPQMK----------KVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDR 96 PPPQ++ + GDRI+A A P + + +G + DR Sbjct: 102 PPPQLRVREIRARKGSALGVGDRILARTEEAGSGWIAHPMKKLARGEALMLGILHRDGDR 161 Query: 97 LAIVP-DHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGD 155 L + P D +D + A + GD +AE P + A +T+ + Sbjct: 162 LWLRPVDKREKRDTLVSDAG-----DADAGDLVLAERAGRPPR----ITARVTERLG--- 209 Query: 156 DHFVP---WWVTLARHNLEKEAPDGVATEM-----LDEGLVREDLTALDFVTIDSASTED 207 D F P V + +H + P+ V E LD G REDL L V ID A D Sbjct: 210 DPFAPRSFSLVAIHKHGIPDVFPETVIEEAGLVTRLDLGEGREDLRDLPIVAIDPADARD 269 Query: 208 MDDALFAKALPDD------KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPM 261 DDA++A +PDD + IVAIAD + ++ GS LD+ AK R + Y P +PM Sbjct: 270 HDDAIWA--MPDDDPGNPGGFRAIVAIADVSFYVRPGSALDREAKKRGNSVYFPDRVVPM 327 Query: 262 LPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE 321 LP LS D+CSL+ E R + C +T+ A+GT+ N F A + A + Y+ ++ Sbjct: 328 LPEALSADICSLKHGEDRAAMVCHLTVKANGTLA-NWRFARAVVRIAANIAYEDAQAAID 386 Query: 322 N---TGDWQPESEAIAEQVRLLAQICQRR-GEWRHNHALVFKDRPDYRFILGEKGEVLDI 377 G W +A+A+ C + R + D P+ R +L EKG +L + Sbjct: 387 GAPVAGTWD---KALADSALKPLWACWKALASARDAREPLDLDLPERRVVLDEKGRILSV 443 Query: 378 VAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL---LKTH 434 R A+R+VE+ MIAAN+ AA+ L K +Y H +P + + L AL L T Sbjct: 444 APRERLDAHRLVEDYMIAANVAAAKALEAKKAPVMYRDH---EPPSREKLVALKDYLATF 500 Query: 435 GLHVDAEEVLTLDGFCK-LRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYA 493 + +V+ F L+R D + ++ R Q+ A + HFGL L +YA Sbjct: 501 DMEFALGQVVRPATFNHILKRITDDAIRPQIMEQVLRSQTQAYYAPRNAGHFGLALGSYA 560 Query: 494 TWTSPIRKYGDMINHRLLKAVIKGETATR------------PQDEITVQMAER------- 534 +TSPIR+Y D++ HR L ET P+ +T + AER Sbjct: 561 HFTSPIRRYADLLVHRSLVGAYGLETGKPRLEGPGRSGDIVPRTALTQEEAERMTPIGEL 620 Query: 535 ----RRLNRMAERDVGDWLYARFLKDKAGT--DTRFAA 566 R AERD D A FL K G DTR Sbjct: 621 ISQAERRAMEAERDTIDRYVAAFLSTKVGELLDTRITG 658 >UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT23_9FIRM Length = 704 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 149/582 (25%), Positives = 265/582 (45%), Gaps = 38/582 (6%) Query: 24 GVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPF 82 G ++ ++KGFGFL + + +I + ++GD +I + K+ ++PE V Sbjct: 67 GKIQTSKKGFGFLITENLDEDIYISEENLNFALNGDDVI--VKKYKDSSGSKPEGKVVFI 124 Query: 83 LTRFVGKVQG-----KNDRLAIVPDHPLLKDA-IPCRAARGLNHEFKEGDWAVAEMRRHP 136 + R KV G KN + D D IP + G K G + ++ + P Sbjct: 125 VERVNQKVVGIFQATKNFGFVVADDAKFATDIYIPKKRMNGA----KNGQKVLVKIDKWP 180 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLAR---------HNLEKEAPDGVATEMLDEGL 187 G + + + + + D+ V +++A+ +++EA + +E Sbjct: 181 SPGKKP-EGRVLEILGYPDEPHVDI-LSVAKSLDIPMEFSKTVKREAKSLETSVQAEEIK 238 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL TID A ++D DDA+ + L + L V IAD ++ E S +D+ A + Sbjct: 239 SRLDLRDKLTFTIDGADSKDFDDAVSLEILENGNYLLGVHIADVAHYVKEDSPIDEEAFL 298 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + YL IPMLP ELS+ +CSL R L+C M + G + N + + I S Sbjct: 299 RGNSVYLLNKVIPMLPFELSNGICSLNEGVDRLTLSCIMEVDKKGQV-INKKICESVINS 357 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 K +LVYD VSD+LE+ G + E ++ + ++ + E R + + P+ Sbjct: 358 KKRLVYDYVSDYLED-GVSDDSLIGLEETLKNMYELSKILQEKRREMGSIDFEVPEALIK 416 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR-VLRDKLGFGIYNVHMGFDPANADA 426 + E G +I+ RR AN+++E+ M+ AN A + ++ F +Y +H Sbjct: 417 VTEDGWPTEILRRERRSANKLIEDFMLLANTTVAEYFFKFEIPF-LYRIHEKPREEKIQE 475 Query: 427 LAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHF 485 L + L+ G + E+ + D L++ + F+ + R + A S + HF Sbjct: 476 LNSYLRPLGYMANFGSEIKSRDIQKLLKKVQGKKEELFISTMALRAMAKARYSPKNDIHF 535 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-------ITVQMAERRRLN 538 GL + Y +TSPIR+Y D+ HR++K ++G+ + + I+ ++ R+ Sbjct: 536 GLCFQYYTHFTSPIRRYADLTVHRIIKDFLRGDLSKNKVKKLNDDLQGISEHISATERVA 595 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + AER V A ++ D+ G ++ I I+ G+ V L Sbjct: 596 QEAERQVESIKMAEYMSDRIG--KKYNGIISGITNFGIFVEL 635 >UniRef50_A1VYZ1 RNB-like protein n=15 Tax=Campylobacter RepID=A1VYZ1_CAMJJ Length = 644 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 158/627 (25%), Positives = 270/627 (43%), Gaps = 64/627 (10%) Query: 5 NPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEV---DAQKSYFIPPPQMKKVMHGDRI- 60 N ++ + K + + A GV+ + KG GFL+ +K I +K + D + Sbjct: 31 NHIIKEHKSKYYLNNGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVA 90 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 + ++ +K+R SA+ V V + + ++V + + GL+ Sbjct: 91 VKLLPLKKKRPSAK------------VILVLKRANETSLVITKRYGEAVLGMNIKTGLST 138 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 K ++ + + + + + + DD V ++LA N E D Sbjct: 139 ALKASQKSLKALPLGTILKIENENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIK 198 Query: 181 EMLDEGLV--------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 E L G R DL AL F TID +D DDA++ K ++ VAIAD + Sbjct: 199 EALANGDSVDASMYENRMDLRALPFCTIDPIHAKDFDDAIY---FDIQKREIYVAIADVS 255 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ S +DK A+ R F+ Y P IPMLPR LS+++CSL+ + R ++ L + Sbjct: 256 EYVYAYSAIDKEARNRGFSIYFPHIAIPMLPRPLSENICSLKPHLDRLAYCFKIALDHEN 315 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 + E F I SK + YD+V + L D + S + L +I + + R Sbjct: 316 KVIKE-ELFEGIINSKRRFNYDEVDEILIQKPDLKELS-----WLYELFEITKNLRKMRL 369 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 +A F+ + R L E + V E ++ ++E+ M+ AN AA++ + G+ Sbjct: 370 KNAFEFR-TEELRMNLDENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKL----IDIGV 424 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVL--TLDGFCKLRRELDAQPTGFLDSRIRR 470 + H+ D D L L+ G+ V+ + L + L EL+ + +D I + Sbjct: 425 FRNHLSADARKIDKLLNELRELGIDVNFKPNLPELIRDIQALSDELNLRAE--VDKLIIK 482 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE------------ 518 Q AE S+ HFGLG + Y+ +TSPIR+Y D+I HRLLKA K + Sbjct: 483 AQKKAEYSSINAGHFGLGFDKYSHFTSPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIE 542 Query: 519 -------TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI--V 569 T R D++ + R+ R A +++G A +++ + EI Sbjct: 543 STCESLSTLEREADKVAFDFMD-RKFARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGA 601 Query: 570 DISRGGMRVRLVDNGAIAFIPAPFLHA 596 DI RV L+++ + + A + A Sbjct: 602 DIILYDTRVNLLESVEVQIMEADIVMA 628 >UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiroplasma citri RepID=Q14Q19_SPICI Length = 705 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 156/587 (26%), Positives = 259/587 (44%), Gaps = 41/587 (6%) Query: 24 GVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEK-ERESAEPEELVEP 81 GV+ +KGFGF++++ Q+ Y++ + + D+++ ++ +K + S + E V Sbjct: 68 GVISINKKGFGFIKINENQEEYYVKQDDLNNALDQDQVLFILKKQKNDNNSKKAEAQVIK 127 Query: 82 FLTR---FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 L R +V V KN + +L + + A +N + + V + Sbjct: 128 VLKRNNEYVVGVIKKNRHQQKYLE--ILNNKLTQYRAEIINLDEAIENTIVKGIITSINS 185 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE--MLDEGL--------- 187 + ++ + I + V L N+ + + TE +++ + Sbjct: 186 KNNLMQVKIIEIIGNTNQVGVDVLAILHEFNIRTKFNEEALTEANQINQNIDVATMLANK 245 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL FVTID ++D DDA+ K + L+VAIAD + S LDK A Sbjct: 246 SRRDLQTEMFVTIDGNDSKDFDDAILVKKNQNGNYLLLVAIADVAHYAPHNSYLDKEAFE 305 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + YL +PMLP +LS+ +CSL E R L C M + G + N + A I S Sbjct: 306 RGCSVYLIDRVVPMLPEKLSNGICSLNPFEPRLTLICEMEIDQQGHVV-NSSIYEAVIIS 364 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAE--QVRLLAQICQRRGEWRHNH-ALVFKDRPDY 364 KA+L YD+V+ Q ++ AE Q+ LAQ + W+ H +V D + Sbjct: 365 KARLTYDEVNKLF-----CQEKNHISAEIAQMLFLAQQLYQILVWKKEHDGVVDFDLDEP 419 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR-DKLGFGIYNVHMGFDPAN 423 +F++ + G++ DI+ R A +++E MI AN A + L F +Y VH P Sbjct: 420 KFVVDKNGKIKDIIVRERADAEKLIESFMIRANETVAETIYWMDLPF-VYRVHDKPKPKK 478 Query: 424 ADALAALLKTHGLHVDA--EEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEP 481 L L GL++ E + + D L + D + + + + R A+ S Sbjct: 479 LFDLYTQLSYLGLNIKGKLENIHSKDLQQILNKLKDKENFKVISALVLRSMEKAKYSDIN 538 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKA-VIKGETA------TRPQDEITVQMAER 534 HFGL Y +TSPIR+Y D++ HRLLK + +G+ TR Q + Sbjct: 539 DGHFGLASWCYTHFTSPIRRYPDLVVHRLLKEYLFQGKVKITDLEQTRAFVSHASQQSSL 598 Query: 535 RRLNRM-AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 L M ER+V A +++DK G + + I ++ G+ V L Sbjct: 599 AELRAMECEREVDKMKEAEYMEDKIGYE--YNGIIAGVTSFGIFVEL 643 >UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMK5_9FIRM Length = 679 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 133/475 (28%), Positives = 220/475 (46%), Gaps = 23/475 (4%) Query: 176 DGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 D ++ EM E V ED +L VTID +D+DDA++ + QL V IAD + ++ Sbjct: 177 DALSKEMKQEKGV-EDFRSLPIVTIDGPDAKDLDDAVYCVKKENGHYQLGVHIADVSRYV 235 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 +GS +D A R + YL IPMLP +LS+DLCSL +E R ++C M ++ DG + Sbjct: 236 RKGSLIDDEAYRRGTSVYLADRVIPMLPFQLSNDLCSLNHDEDRYAMSCIMDVAPDGKVA 295 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + + + + Y +++ E TG + + +R L + R N Sbjct: 296 AE-KITPSMVRVARRCNYPEINQAFE-TGVASDDLKPYLPMLRNLKACADILRKNRENRG 353 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + D P+Y+ IL E+G L I R A +++E+AMIAAN AR L +Y + Sbjct: 354 ALEFDFPEYKVILDEEGTPLRIEKRNRGDAEKMIEDAMIAANETVARFLEATGHTSVYRI 413 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA----QPTGFLDSRIRRF 471 H D + + L +L K + AE++ ++R +++ + + R Sbjct: 414 H---DHPDGNKLLSLKKMMAIFGMAEKLPKEPEPKDMQRLMESMKGKESEAVVQVMTLRS 470 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK---GETATRPQDEIT 528 A STE HFG+ Y +TSPIR+Y D++ HRL++ ++ ++ + Q E Sbjct: 471 LPQACYSTENKGHFGIASTCYTHFTSPIRRYPDLMVHRLIRQALRNRLNKSQLKKQTEFL 530 Query: 529 VQMAERRRLNRM----AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 ++ E ERD D ++ G F A I ++R G+ V L DNG Sbjct: 531 LRAVEHCSETEQNAVETERDTTDLKMTEYMIPFVGEP--FDAHITGLTRFGIFVGL-DNG 587 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQ-IKGETVYKVTDVIDVTIAEVRMETRSI 638 + + DE V ++ TV+ ++G Y + + VT+ + E R + Sbjct: 588 VEGLVHIDSMDD--DEYVYQEDTMTVKGLRGGKKYTMGMPVRVTLVKADKEKREL 640 >UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZA7_DEIDV Length = 1123 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 163/655 (24%), Positives = 286/655 (43%), Gaps = 55/655 (8%) Query: 24 GVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERESA--------- 73 G +A+ GFGF+ D+ + Y+IP Q + +GD ++ + + Sbjct: 256 GKFQASAAGFGFVVPDSGGEDYYIPAEQTLEAWNGDIVLVRMEGRGDSGRGGGPRRGQRG 315 Query: 74 --EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLK-DAIPCRA-----ARGLNHEFKEG 125 P V + R K+ G L HP+LK D R GL + G Sbjct: 316 DGNPRASVVRIVQRAYSKLVGT---LEFHHGHPILKPDDHRARHRILVLPEGLEG-LQAG 371 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD-------GV 178 V E+ G+ + ++ + + DD + + L E P + Sbjct: 372 ARVVTELFWPENTGEDEVFGQVVRVLGEQDDPETETEAVIVKFGLRGEFPGEVMAEAAAI 431 Query: 179 ATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 TE+ E LV R DL + T+D +D DDA+ + P+ + V IAD + ++ E Sbjct: 432 PTEIPAEALVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVVGVHIADVSHYVRE 491 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 G+ LD A RA + YLPG +PMLP LS+ +CSL + R + + LSA+G I D Sbjct: 492 GTPLDDEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPYQDRLTMTALVELSAEGDILD- 550 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWR-HNHAL 356 ++ + I SKA+L YD+V + E T + + + LL +I + + R +L Sbjct: 551 VKIAPSVINSKARLTYDEVQAYSEATATLPDHARHLEGDLHLLLKITSKLRQKRLREGSL 610 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 FK R + + +G G ++++ A ++E+ M+ AN A L + ++ +H Sbjct: 611 DFKMR-EVKVDVGPDGR-MELIPIREETARGMIEDLMLLANKVVAHYLLQREIPTLFRIH 668 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFA 475 ++ + GL E T + + +++ P +++ + R A Sbjct: 669 EEPTLQRFQEVSQAIGRLGLAFPGGEP-TPQAYQAVLKQVRGTPRESVVNTLLLRSMQQA 727 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQ----- 530 + + E HFGL + Y +TSPIR+Y D++ HR+LK V+ GE ++ +Q Sbjct: 728 KYAGENLGHFGLAFDEYLHFTSPIRRYPDLMVHRVLKGVLGGELKAGNREVAKLQGRLPA 787 Query: 531 ----MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 ++R R AERD+ + A++ ++ FA + + G+ V L DNG Sbjct: 788 MGDHTSDRERTAAEAERDLTKYYQAKWAQEH--LQETFAGNVSGVVASGLYVAL-DNGVE 844 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGET---VYKVTDVIDVTIAEVRMETRSI 638 + + + D+ E+ + ++G + +++ D + VTI+ V R I Sbjct: 845 GKL---HISNLDDDYYVYIEDAQM-LRGRSGGRTFRLGDSVTVTISAVNPMARMI 895 >UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VV97_DYAFD Length = 795 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 161/602 (26%), Positives = 268/602 (44%), Gaps = 53/602 (8%) Query: 66 SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIV-PDHPLLKDAIPCR-----AAR-GL 118 S + R ++VE VG ++ N R A+V PD+ L D I AAR G Sbjct: 155 SGRNRTEGRVTDIVERSNAEIVGIIE-INPRFAVVQPDNKRLYDPIYLEPDQVGAARHGD 213 Query: 119 NHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV 178 K +W+ RR +G E+ + ++ V LA L PD V Sbjct: 214 KVIVKVTEWST---RRSQAEG------EIVSVLGAAGNNDVEMHAILAEFGLPYHFPDEV 264 Query: 179 ATEM--LDEGLVREDLT-------ALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 E + +V++DL L F TID +D DDAL + L +D +++ V IA Sbjct: 265 EAEAQKIPNKIVKKDLAKRRDIRDVLTF-TIDPVDAKDFDDALSVRYLDEDVVEVGVHIA 323 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D + ++ G++L+K A RA + YL +PMLP +LS++LCSLR NE R + ++ Sbjct: 324 DVSHYVLPGTELEKEALRRATSVYLVDRTVPMLPEKLSNNLCSLRPNEDRLAFSAIFEIT 383 Query: 290 ADGTIEDNIEFFAAT-IESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRR 347 + G + E+F T I S + Y++ L++ GD+ E + + + LA+I ++ Sbjct: 384 SKGKLLK--EWFGRTVIHSDRRFTYEEAQAVLDSGEGDFPKELDTLNK----LAKIFRKE 437 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + + P+ RF L +G L I + R +N+++EE M+ AN A + Sbjct: 438 ---RFKKGAINFETPEVRFRLDPEGRPLGIYTKERHDSNKLIEEFMLLANKRVAEYVYS- 493 Query: 408 LGFG------IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQP 460 L G +Y +H DP A + GL ++ EE + + +++ +P Sbjct: 494 LSKGEDKNTMVYRIHEAPDPDRLQTFANFVAKLGLKLEVEEESKIAKSMNAMLAKVEGKP 553 Query: 461 -TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 ++S R + A STE HFGL Y+ +TSPIR+Y D++ HRLL+ + G Sbjct: 554 EQNLIESLAVRTMAKARYSTEDLGHFGLAFRRYSHFTSPIRRYPDVMAHRLLQHYLDGGA 613 Query: 520 ATRPQ--DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 + + + +ER RL AER + ++ + F I ++ G+ Sbjct: 614 NVDQETYERASKHSSERERLAAEAERASIKYKQVEYM-SMMDPEKEFGGIITGVTEFGIF 672 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETR 636 V + + + I L D +EN + + +Y D + V + E + R Sbjct: 673 VEITETASEGLIRMTDLGD--DYYELDKENYRVIGQHTKKIYAFGDAVKVKVKETNLARR 730 Query: 637 SI 638 S+ Sbjct: 731 SM 732 >UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms RepID=A6ED44_9SPHI Length = 709 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 174/647 (26%), Positives = 289/647 (44%), Gaps = 56/647 (8%) Query: 24 GVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELV 79 G V T G F+ D + K F+ ++ +HGD++ I+++K E E E++ Sbjct: 81 GKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAKKSGRKNEGEVVEII 140 Query: 80 EPFLTRFVGKVQGKNDRLAIV--PDHPLLKDA-IPCRAARGLNH----EFKEGDWAVAEM 132 E T F+G ++ +DR A V D +++D +P G + + K DW E Sbjct: 141 ERAKTDFIGVIK-ISDRFAFVIADDKKMMQDIFVPLSDLNGAKNRQKVQVKITDWP--EG 197 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARH-NLEKEA---PDGV-ATEMLDEGL 187 ++P+ + E + T + + L +EKEA P+ + A E+ D Sbjct: 198 VKNPIGTVITILGEQGENNTEMNAILAQYGFPLQFPPEVEKEANAIPEQITADEIKDRRD 257 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 RE +T TID A +D DDA+ K L + ++ V IAD ++ S LDK A Sbjct: 258 FRETVT----FTIDPADAKDFDDAISFKKLDNGHYEVGVHIADVAHYVTPNSALDKEAYG 313 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT-IE 306 RA + YL IPMLP LS+ +CSLR +E + A L I + E+F T I Sbjct: 314 RATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFELDNKANIIN--EWFGRTVIH 371 Query: 307 SKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 S + Y++ + +EN TGD+ E + E +L R + N A+ F + + + Sbjct: 372 SDRRFSYEEAQEVIENKTGDFSEEILKLNELAYIL------RDKKFKNGAISF-ESTEVK 424 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG------IYNVHMGF 419 F L E G+ L + + R+ A++++E+ M+ AN A + K G G IY H Sbjct: 425 FKLDEDGKPLGVYVKERKDAHKLIEDFMLLANKKVAEFIAKK-GKGKQKYTFIYRSHDSP 483 Query: 420 DPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQP-TGFLDSRIRRFQSFAEI 477 + N A G ++ + + L +++ + L R + A Sbjct: 484 NLENLGNFALFAARFGYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAVY 543 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-EITVQMA---E 533 +T+ H+GL + Y +TSPIR+Y D++ HRLL A + E + ++ EI + E Sbjct: 544 TTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNKEKSADAEEYEIAASHSSTME 603 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 +R + AER + A +L++ G + I ++ GM V L DN I Sbjct: 604 KRAAD--AERASIKYKQAEYLEENIG--NLYKGIISGVTEWGMYVELADNKCEGMIR--- 656 Query: 594 LHAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVRMETRSI 638 L + D+ E I + + Y++ D + V + +V + R I Sbjct: 657 LRDLSDDFYVLDEKNYCIIGQRKKKTYQLGDEVQVKVKKVDLSKRQI 703 >UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID=B8DP48_DESVM Length = 1037 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 184/678 (27%), Positives = 284/678 (41%), Gaps = 98/678 (14%) Query: 24 GVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEP 81 G + G GF+ E + ++ P QM HGD+++ + R PE + Sbjct: 80 GTLSIQRSGMGFVLPEEKGRDDIYVHPYQMGDAWHGDKVVVALLPG--RHGKNPEGRIVR 137 Query: 82 FLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA------------RGLNHEFKEGDWAV 129 L R ++ + R + H LL CR A + + ++GD V Sbjct: 138 VLERGRKEIPARVVRR--MGRHSLL-----CRPADPRMAVSFVVDMSAVEEKAEKGDLVV 190 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDH-FVPWWVTLARHNLEKEAPDGVATEMLDEGLV 188 A K + +A + DD+ V + H++ + P V E D V Sbjct: 191 AAPGE---KVEDGLWAATGLAVLGADDNVLVQERLVKINHDVPGDFPPEVLEEARDLPAV 247 Query: 189 --------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 R DL L+FVTID A D DDA++ + +L VAIAD ++ GS Sbjct: 248 PGRDDMEGRIDLRHLEFVTIDGAKARDFDDAVYVEEQ-GTGYRLWVAIADVAHYVRPGSA 306 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 +D+ A+ R+ + Y P PMLP LS+ LCSL R + ADGT +F Sbjct: 307 MDREAQARSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAETFFYADGT-PGRSKF 365 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQ--------PESEAIAEQVRLLAQICQRRGEWRH 352 +AA IESKA+L Y QV+ + + + P E RLL RG Sbjct: 366 YAAIIESKARLTYGQVNRAIIEKDEKERRLLTPVLPLLERAEALARLLNAKRSERG---- 421 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 +L F D P+ I GE +DI + R ++I+EE MIAAN AR L +K + Sbjct: 422 --SLDF-DLPEPEVIFNIYGETVDIGRKVRHFGHQIIEEFMIAANEAVARFLTEKNARFL 478 Query: 413 YNVHMGFDPANADALAALLKTHGL--HVDAE-EVLTLDGFCKLRRELDAQPTGFLDSRIR 469 Y VH D + L +L L H+ + L G + + D + FL +R+ Sbjct: 479 YRVHPEPDTEKLEGLFKVLGRTSLAQHLPGKASAKALQGVLQAAKGSDQE---FLVNRMA 535 Query: 470 -RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK--------AVIKGETA 520 R A + + HFGL E Y +TSPIR+Y D++ HR L+ + GE A Sbjct: 536 LRTMMQARYAPDHEGHFGLASECYCHFTSPIRRYADLVVHRALRRTLGLPVNGPLPGERA 595 Query: 521 TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTD-TRFAAEIVD--------- 570 I + R+ AER++ + FL ++ G + T + I+D Sbjct: 596 LL---TIADTLNTNERVAMEAEREILKRITVLFLSERVGEEFTGVISGIIDFGFFVEFNE 652 Query: 571 -ISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA 629 ++ G +R+ +D+ ++P R ELV + + +++ + V +A Sbjct: 653 VMAEGMVRLSSLDDDYYGYLPE------RQELVGERTGRS--------FRLGQTVTVRLA 698 Query: 630 EV---RMETRSIIARPVA 644 EV R+E +A P A Sbjct: 699 EVNVARLEVNLALAGPDA 716 >UniRef50_C3XLE6 Ribonuclease n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLE6_9HELI Length = 719 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 118/402 (29%), Positives = 187/402 (46%), Gaps = 51/402 (12%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D T L F ID +D DDA+F ++ L +AIAD + ++ + S LD AK+R Sbjct: 216 RADCTHLPFCAIDPVGAKDHDDAIF---YDEENSTLYIAIADVSYYVKKDSALDLEAKMR 272 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 F+ Y P +IPMLPR LS++LCSL A E+R + ++ L N E F A I+ Sbjct: 273 GFSVYFPHKSIPMLPRTLSENLCSLSAGELRLAMVWKIRLHKCTKAVLNSELFEAIIKVS 332 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 KL Y++V LE+ ++ + + L + Q+ + R + F L Sbjct: 333 QKLTYEEVDLLLESKKSKTIKTN-LKSMLFALNDLAQKLRQKRLKNGFDF---------L 382 Query: 369 GEKG--------EVLDIVAEPRRIANRIVEEAMIAANICAA---------RVLRD-KLGF 410 G+K E+ D+ + + +++++VEE M+ ANI +A RD +L Sbjct: 383 GDKSVMELDKNLELKDLKLQSQTLSHQLVEECMLLANIQSALLQSKQSTPSTQRDERLKL 442 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDA----------EEVLTLDGFCKLRRELDAQP 460 GIY VH + L + G++ +E+L + K + Sbjct: 443 GIYRVHNAPKLESIQDLFTEFRLLGIYHKKKIPKYTKDFHKEILEIQALTK-----HSNM 497 Query: 461 TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK---G 517 +D I R A ++ HFGLG E+Y+ +TSPIR+Y D++ HR+LK I+ Sbjct: 498 AAEVDKLIIRSMQQATYASHNIGHFGLGFESYSHFTSPIRRYSDLLLHRILKDKIQFNPN 557 Query: 518 ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 + PQ I ++++ R E D D +AR+L K G Sbjct: 558 SLESLPQ--ICEDLSQKEREVAKIELDFKDRKFARYLNKKIG 597 >UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJI5_ACIBL Length = 827 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 177/753 (23%), Positives = 293/753 (38%), Gaps = 143/753 (18%) Query: 18 QTPRAE----GVVKATEKGFGFL-----EVDA--QKSYFIPPPQMKKVMHGDRIIAVIHS 66 +T RA+ G + G+GF+ EV + + +IPP + MHGD ++A I + Sbjct: 63 KTTRAQNLIAGKLSMHRDGYGFVMPGAAEVKSAIEGDIYIPPHAIGSAMHGDEVLAEIVA 122 Query: 67 EKERESAEPEEL--VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA--------- 115 K+ AE L + T VG D + +D + + Sbjct: 123 TKKDGRAEGRILRTLNRAHTSVVGTFHYDKVNFVRPIDEKITQDIVIPKGMEWPPDVERE 182 Query: 116 ------------RGLNHEFKEGDWA-------VAEMRRHPLKGDRSFYAELTQYITFGDD 156 R + E K +W E+ P +S + + + + DD Sbjct: 183 EGEKRKKRSEQDRVIGTEAKRREWTDLDNLVVNVEITEWP-SPTQSPRGRVVEILGYEDD 241 Query: 157 HFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDM 208 V + + +H+L + P V +E E R D L VTID + D Sbjct: 242 FGVDTEIMIRKHHLPHQFPAAVLSEARSFSPEIPAKEIKHRRDYRELPIVTIDGETARDF 301 Query: 209 DDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSD 268 DDA+ LP+ +L V IAD ++ + S +D A++R + Y P +PMLP ELS Sbjct: 302 DDAVLVSHLPNGNFELQVHIADVAHYVTDESDIDLEARLRGTSVYFPDRAVPMLPLELST 361 Query: 269 DLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQP 328 D+CSLR R VL+C M + G I E I S ++ Y V L+ + + Sbjct: 362 DICSLRPQVERLVLSCVMEIDHQGEIV-GYELNEGVIRSAERMTYTAVHGVLQGDTELRT 420 Query: 329 ESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRI 388 + + L+ + + R + D P+ E G + + R A+R+ Sbjct: 421 RYAPLVKNFELMRDLASILNKKRQKRGSIDFDLPEPVIEFDENGLMKGVTRSERNEAHRL 480 Query: 389 VEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHG------------L 436 +EE M+AAN A L + +Y +H DP L + G + Sbjct: 481 IEEFMLAANESVATYLEARKIASLYRIHEKPDPKRVYEFETLAASFGYSLGVGSLPIERV 540 Query: 437 HVDAEEV-------------------LTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAE 476 H+ A++ +T + KL ++L+ +P L + R A Sbjct: 541 HLKADKRARHGTGRRSEPIEIPKDVHITPRMYQKLTQKLEGKPEERILSYLMLRSLRQAR 600 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE------------------ 518 S + HF L +Y +TSPIR+Y D+I HR+LK V+K + Sbjct: 601 YSEKNEGHFALAATSYTHFTSPIRRYPDLIVHRILKQVLKEQAEKNDHGVPVGVGGAVNE 660 Query: 519 ---------------------------TATRPQDEITVQMAER----RRLNRMAERDVGD 547 T P++++ Q+AE R AER++ + Sbjct: 661 VDGHSPWSKRDGHERKGKQQHEDRPPLTGPIPEEQLR-QIAEESSDAERRADDAERELLE 719 Query: 548 WLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN 607 W +F++D+ G + F IV +++ G+ V L D +P L ++ + EN Sbjct: 720 WKKIKFMQDRVGEE--FTGLIVSVTKYGLFVELTDLFVEGLVP---LLTLQGDHFNYHEN 774 Query: 608 GTVQIKGE---TVYKVTDVIDVTIAEV-RMETR 636 T Q+ GE Y + D + V + + RM+ + Sbjct: 775 -TKQLIGERSRKTYSLGDKVRVILDRIDRMQRK 806 >UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiaceae RepID=Q6MCC7_PARUW Length = 775 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 154/589 (26%), Positives = 248/589 (42%), Gaps = 40/589 (6%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQKSY----FIPPPQMKKVMHGDRIIAVIHSEKERES 72 SQ G++K +GFGF++V K++ FIP K + GD ++ VI +++ Sbjct: 91 SQADVVTGILKMHPRGFGFVQVTIPKNFEQDIFIPKHLTKNGVDGD-VVEVILNQEVISD 149 Query: 73 AEPEELVEPFLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 PE + L+R G ++ + + PLL H+ + GD Sbjct: 150 KGPEGKIVAILSRGRTHMAGIIRQLDKDRMFIAHVPLLGTQQRVVVHPTEEHQLQIGDRI 209 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV 188 V E+ K + + Y+ D + + L + E + G Sbjct: 210 VMEVIDWGSKETETI-CRFSHYLGHISDPSCDVYAAIEEFELRSDFQTAAIEEANNLGKS 268 Query: 189 --------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 REDL L +TID + +D DDAL + L V IAD + ++ G+ Sbjct: 269 VSKKDIQNREDLRELISLTIDPDTAKDFDDALSLTRDAEGIYNLAVHIADVSHYVQPGTA 328 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD+ AK R + Y PG+ +PMLP LS++LCSLR N R ++ M + + G + D F Sbjct: 329 LDEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPNVNRLAVSVLMRIDSSGNLLD-YRF 387 Query: 301 FAATIESKAKLVYDQVSDWLENTGD--WQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 + I+S + Y + L+ + ++P E + E RLL Q RG + Sbjct: 388 TRSVIKSAKRFTYKEAKKVLDGQKNSPYKPHLELMVELCRLLKQKRYERGSIEFS----- 442 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 P+ ++ EKG+ I +++VEE M+ AN A L K Y +H Sbjct: 443 --LPELVILVDEKGKPYSTEYITYDITHQMVEEFMLKANEIVAWDLSQKGKNLTYRIHDE 500 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKL-RRELDAQPTGFLDSRIRRFQSFAEI 477 N + L G + ++ T KL + + + +L S R A Sbjct: 501 PSEENLRDFSTLAAAFGFKLP--DLPTPQDLQKLFEKAAETAYSNYLASSYIRRMRLAAY 558 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD--EITVQMAERR 535 S E H+GL L Y +TSPIR+Y D++ HR+L GE+ R D EI +E+ Sbjct: 559 SAENIGHYGLSLTHYCHFTSPIRRYVDLVVHRIL----FGES-DRFDDLQEIANYCSEQE 613 Query: 536 RLNRMAERDVGDWLYARFLKDK--AGTDTRFAAEIVDISRGGMRVRLVD 582 R++ AE V R L+++ + + A I + G+ + D Sbjct: 614 RISAKAENSVVILKKLRLLEERHQKAPEHEYQAIITRVKNFGIYFEIFD 662 >UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9HELI Length = 716 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 120/394 (30%), Positives = 185/394 (46%), Gaps = 36/394 (9%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R +LT L F ID S +D DDA+F ++ L VAIAD + ++ S LD AK R Sbjct: 216 RINLTNLPFCAIDPVSAKDHDDAVF---YDEESSILYVAIADVSHYVTPNSPLDIEAKSR 272 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 F+ Y P +IPMLPR LS++LCSL+ + R + ++ L + E FAA I+ + Sbjct: 273 GFSIYFPHKSIPMLPRILSENLCSLQEGKTRLAMVWKIRLHKRTKAVLSSELFAAVIKVR 332 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 KL YD+V D L T + + + + L ++ Q+ + R F + L Sbjct: 333 QKLTYDEV-DILFETQKSKTIKKPLHSMLFALQELTQKLRKKRLQKGFDFLG-DEVELEL 390 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK-------LGFGIYNVHMGFDP 421 + E+ + +P+ +++++EE M+ ANI +A++L K L GIY VH Sbjct: 391 DKNLELKSLHFQPQSSSHQLIEECMLLANIQSAKLLEQKNSKNDENLKLGIYRVHQKPKQ 450 Query: 422 ANADALAALLKTHG-------------LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRI 468 L L+ G LH E+ K++RE+D I Sbjct: 451 EKLSELFGELRMLGIWRGKAIPKTQESLHKAIIEIQNNAKKAKMQREVDKLI-------I 503 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEIT 528 + Q S G HFGLG EAY+ +TSPIR+Y D+I HR+LK+ I + ++ + Sbjct: 504 KSMQQANYASHNLG-HFGLGFEAYSHFTSPIRRYSDLILHRILKSKITLQEDIDYKESLP 562 Query: 529 V---QMAERRRLNRMAERDVGDWLYARFLKDKAG 559 + + + R E D D +AR+L G Sbjct: 563 MLCDNLNTQEREIMQIEWDFQDRKFARYLSKHLG 596 >UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteria RepID=B5CPU6_9FIRM Length = 749 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 153/610 (25%), Positives = 258/610 (42%), Gaps = 62/610 (10%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIAVIHS 66 L++ + Q R G +A +GFGF+ V+ Q+ FIP + GD + +I Sbjct: 104 LSKRGKYSKGQAKRIMGTFQANIRGFGFVMVEGQEEDIFIPAENVNGAFQGDEVECIITG 163 Query: 67 E--KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R+ + ++ +T+ VG + + PD N F + Sbjct: 164 SPSGRRQEGKIVGIISHQVTKVVGLYEKSKSFGFVRPD----------------NQRFLK 207 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWW--VTLARH-------------- 168 + A H + G + ELT Y G +H P + + H Sbjct: 208 DIYIPAGKELHAMTGHK-VVVELTSY---GGEHMKPEGKIIEILGHVNDPGTDILSIVKD 263 Query: 169 -NLEKEAPDGVATEMLDEG--------LVREDLTALDFVTIDSASTEDMDDALFAKALPD 219 ++ E P+ V + + G R DL VTID +D+DDA+ + + Sbjct: 264 FDIPTEFPEKVLNQAVRVGKEVSEADMAGRMDLRDWQMVTIDGEDAKDLDDAV-SVVMDG 322 Query: 220 DKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279 + +L V IAD T ++ E S LD A R + YL IPMLP+ LS+ +CSL A E R Sbjct: 323 ENYRLGVHIADVTNYVQERSALDWEALKRGTSVYLADRVIPMLPQTLSNGICSLNAGENR 382 Query: 280 PVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL 339 L+C MT++ +G + D+ + I ++ Y+ V+ L + + Sbjct: 383 LTLSCIMTVTPEGEVVDH-QIAETVICVDKRMSYNGVAKVLAGDAEALEADREFVPMILR 441 Query: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-I 398 + ++ E R + D P+ + IL EKG ++I R A +I+E+ M+ AN Sbjct: 442 MKELSDIIRERRAKRGSIDFDFPETKIILDEKGRPVEIKPYDRNDATKIIEDFMLLANET 501 Query: 399 CAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA 458 A ++ F +Y H D L + G ++ + KL +++ Sbjct: 502 VAEEYFWREIPF-LYRTHDVPDEEKIRKLGTFINNFGYNLHVRNEVRPKEIQKLLCKVEG 560 Query: 459 QPTGFLDSRIR-RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 P L SR+ R A+ +TE HFGL + Y +TSPIR+Y D+ HR++K ++G Sbjct: 561 TPEEPLISRLALRSMKQAKYTTENTGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKENLRG 620 Query: 518 E-TATRPQ------DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 T R + E+ Q ++R R +ER+V A +++ G + + I Sbjct: 621 RLTGERMEHYRKILTEVASQCSQRERTAEESEREVVKLKKAEYMQAHIGGE--YEGVISG 678 Query: 571 ISRGGMRVRL 580 +++ G+ V L Sbjct: 679 VTKWGVYVEL 688 >UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9F9_SORC5 Length = 790 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 160/581 (27%), Positives = 251/581 (43%), Gaps = 39/581 (6%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVIHSEKER 70 ++Q+ ++ EG + +GFGF+ + A +I P M +HGD ++ I S + R Sbjct: 77 QKQVEARGAEREGTLTVHPRGFGFVALGGAADDVYISPEAMGGALHGDTVVVRI-STRSR 135 Query: 71 ESAEPE--ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC----RAARGLNHEFKE 124 E E +V+ R G ++ + + PD ++ I A + + ++ Sbjct: 136 RGVEGEIVRVVKRRHARVAGVLRRRGRSAWLEPDDGRVRGPIVIVPREPGAPLVPPDAED 195 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV------ 178 G AV + R P + + L + D V L R +E+E Sbjct: 196 GAAAVVSIARFPDLAEENPEGVLEAVLGTPGDPNVEVAKILVREGIEEEHAPEAIAEAEA 255 Query: 179 -ATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 E+ E L R DLT L TID D DDA++ D + +AIAD + ++ Sbjct: 256 FGGEVPAEALEGRTDLTHLPMPTIDPEDARDHDDAVWVIREEDGSYRAWIAIADVSHYVR 315 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 GS LD+AA R + YLP IPMLPR LS +LCSL +R L + L A + Sbjct: 316 PGSALDQAALARGNSVYLPDRAIPMLPRALSSNLCSLLPGVIRLCLCVEVELDATAAVR- 374 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGD--WQPESEAIAEQVRLLAQICQRRGEWRHNH 354 I S AKL Y V+ L T + PE+EA+ ++++ + + R Sbjct: 375 RARVIEGYIRSIAKLTYPGVARALGFTPEPPRSPEAEALRNDLQVMWDLARLLRGRRMRR 434 Query: 355 ALVFKDRPDYRFILGEK-GEVLDI--------VAEPRRIANRIVEEAMIAANICAARVLR 405 + D P+ + +L K G +D+ VA+ A +++EE M+ AN A+ + Sbjct: 435 GALDLDLPEAKVVLDPKTGAPVDVQKRSHDPGVAK----AYQLIEELMLLANETCAQFVV 490 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FL 464 D+ ++ H D A + A + GL D E+ ++LDA P L Sbjct: 491 DQGIPTVFRYHAPPDQAKLERFATMCGELGLAFDPEDAADPKRLSVFLKKLDAHPQKQVL 550 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG------E 518 + R A HFGL AY +TSPIR+Y D+ HR ++AV++G E Sbjct: 551 HMLLLRAMKQAVYDVANVGHFGLASSAYLHFTSPIRRYPDITAHRAIRAVLRGERVDRSE 610 Query: 519 TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 AT E + +ER R ER+V D A ++ + G Sbjct: 611 AATERLREAAITASERERKAMEVEREVVDLHRALLMRSRLG 651 >UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=RNR_BUCAI Length = 731 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 148/591 (25%), Positives = 252/591 (42%), Gaps = 41/591 (6%) Query: 22 AEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIAVIHSE--KERESAEPEEL 78 +G V G+GFL + K ++ QMK +HGD I+A I K R SA +L Sbjct: 85 VKGKVIGHRDGYGFLRTETLKEDLWLSSEQMKSCIHGDIILAHIVETHGKRRSSARFLKL 144 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 ++P VG+ + ++PD I +A + + G ++++HP++ Sbjct: 145 LQPNNILIVGRYYIDDKIKFVIPDDTRFNFKIFIFSA--IKDDISIGSIVSVKLKQHPIR 202 Query: 139 GDR--SFYAELTQYITFGDD---------HFVPWWVTLARHNLEKEAPDGVATEMLDEGL 187 R F E+ G + H +P +L ++K+ + + Sbjct: 203 NSRVQGFIVEILGK-EMGTNLAIEIALRTHLIP---SLWSKEVKKQVYEISRKINQYDFK 258 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAK--ALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 R DL F TID D DDA+F K A P++ L VAIAD + ++ + LDKAA Sbjct: 259 NRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPEEGWILWVAIADVSCYVQPNTPLDKAA 318 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 R + Y P IPMLP ++S DLCSL+ N R L C M+LS G + + + + I Sbjct: 319 LERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICEMSLSKQGEL-ISYKHYEGII 377 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 S + Y+++ + + + + + L+ + + + ++ + + + Sbjct: 378 CSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSCLQNIFNKDNISKKGIYFENIEPK 437 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 F+L + I R A++ +E MI AN+ +AR + ++ H N Sbjct: 438 FVLDSNLRIKSIYQNIRNDAHKFIESCMILANVASARFVEKYKYPVLFRNHDRPKKDNVV 497 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPH 484 +L L G + + + L + + +P + + + R + A S + H Sbjct: 498 SLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDRPEYEMIQTVLLRSMTQAVYSPDNRGH 557 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD---------------EITV 529 FGL L +Y +TSPIR+Y D+I HR++K ++ + T + +I Sbjct: 558 FGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKNTSKSNYNFYSAHLYSTGEIKKIGA 617 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + R A RDV DWL F+ K G I +++ G VRL Sbjct: 618 HCSITERRADEANRDVIDWLKCDFMYKKIGCI--LNGVISNVTTFGFFVRL 666 >UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0LU85_HALO1 Length = 1004 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 168/620 (27%), Positives = 263/620 (42%), Gaps = 72/620 (11%) Query: 24 GVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPF 82 G + G+GF+E+ D + F+P + GDR++ S + E++ Sbjct: 298 GRITVHPAGYGFVELEDGTGTVFVPARHRGAALDGDRVVLNTWSGYKGTEGRVIEVLSRG 357 Query: 83 LTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH--------EFKEGDWAVAEMRR 134 + G +Q + + PD P R A H + K G AV E+ R Sbjct: 358 RAKLTGTLQRTGRAVYLEPDDP--------RIATDYGHVPLIDGPPQSKVGQAAVVEICR 409 Query: 135 HPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA--------TEMLDEG 186 +P L + + DD LA +L E P VA T + Sbjct: 410 YPTHERPELVGRLVRVLGKPDDPRTEIEKILAFADLPTEFPRDVARRGDETSTTVRTRDQ 469 Query: 187 LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 + R DL FVTID + D DDA+ + P ++ VA+AD + ++ +D+ A Sbjct: 470 VDRVDLRDRPFVTIDPVTARDFDDAVCIEDGPHGGPRVWVAVADVSHYVEIDDPIDREAA 529 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 +R + YLP +PMLP LS +CSL R + R+ L+ DG + + +F AA I Sbjct: 530 VRGVSVYLPDRVVPMLPLPLSAGICSLNPEVDRCAMVVRLDLTDDGRVLER-DFAAAVIR 588 Query: 307 SKAKLVYDQVSDWLENTGD-------WQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 S A+L Y V+ L +GD ++P + A++ RL A + R R AL Sbjct: 589 SHARLDYPGVAAAL--SGDFRGRRDHYRPWAPALS---RLAALAQRMRTRRRARGALELT 643 Query: 360 DRPDYRFILGEKGEVL-DIV----AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 Y + ++ E++ DIV AE R A +VEE MIAAN + ++ ++ Sbjct: 644 LAEPYVILDADEAELVRDIVRSKGAEDVRQAYELVEEFMIAANEAVGKYFAERNLPTVWR 703 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA---QP-TGFLDSRIRR 470 +H +P L +L G+ + E++ +RR ++A QP L ++ R Sbjct: 704 IHAPPEPDRLHELLPVLANFGIKLTVEDIEAATKPTGMRRIIEAIEGQPAAASLSFQVLR 763 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI------KGETATRPQ 524 A+ ST+P HFGL Y +TSPIR+Y D++ HR LK + G A P Sbjct: 764 SLKQAQYSTDPIGHFGLASPFYLHFTSPIRRYADLLVHRQLKHYLHADGKPSGGGARIPA 823 Query: 525 DEI------TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 +I Q++ R ER+ A F++ + G +F RV Sbjct: 824 ADIDTLAERCAQISTHERRAVEVEREAVSMYRAYFMRGQVG--EQFTG----------RV 871 Query: 579 RLVDN-GAIAFIPAPFLHAV 597 V N GA + APF+ + Sbjct: 872 SAVTNFGAFVELDAPFVEGL 891 >UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma RepID=B3PMK9_MYCA5 Length = 718 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 126/433 (29%), Positives = 205/433 (47%), Gaps = 52/433 (12%) Query: 170 LEKEA--PDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 LEK A P + E D R DLT+L VTID T+D DDA+ L + +L + Sbjct: 248 LEKAATIPQEIIPEDYDN---RVDLTSLLTVTIDGLDTKDFDDAISCSKLENGNYKLFIH 304 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ EG +DK A R + YLP IPMLP LS+ +CSL N +R L + Sbjct: 305 IADVSHYVKEGDAIDKEALERGTSIYLPDKVIPMLPFALSNGICSLNPNVIRACLTLELE 364 Query: 288 LSADGTIEDNI--EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 L G N+ + +A+ I+S +L Y++V+D+ + E + + R +++I Sbjct: 365 LDNHGK---NVSSKVYASLIKSDYRLTYNEVNDFFNQKIEVPNEINNLLSRAREISKIL- 420 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 R + + + + P I+ E ++ DIV A +++E+ M+ AN A +++ Sbjct: 421 RAKKIKDGYVDFEIEEPK---IIMEDNDIKDIVIRKDGEAEKLIEDFMVRANETIAEMMK 477 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-- 463 + IY +H D L+AL +E+L G ++ D P F Sbjct: 478 ELKIPSIYRIH---DKPETLKLSAL----------QELLGFVGMKNIQVPFDGSPKSFEI 524 Query: 464 ---------LDSRIR----RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRL 510 LD ++ R A+ S+ HFGL AY+ +TSPIR+Y D++ HRL Sbjct: 525 MVNKIKAIKLDDYLKMALLRTMQKAQYSSNNIGHFGLASSAYSHFTSPIRRYPDLLLHRL 584 Query: 511 L-KAVIKG----ETATRPQDEI--TVQM-AERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 + K ++ G + + +DEI QM +E + ER V D + ++F + + Sbjct: 585 IRKYILNGKFDPKNYEKVKDEIEAIAQMNSEAEKTAMTVERSVVDVMKSKFF--EKFINK 642 Query: 563 RFAAEIVDISRGG 575 F A++V I + G Sbjct: 643 TFVAQLVSIEKFG 655 >UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1M4_ERYRH Length = 729 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 119/394 (30%), Positives = 197/394 (50%), Gaps = 26/394 (6%) Query: 198 VTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGF 257 +TID +D+DDA++ +AL + +L V IAD ++ + LD++A R+ + Y+ Sbjct: 245 ITIDGEDAKDLDDAIYMEAL-NGGYRLYVHIADVGHYVQPQTALDQSAYERSSSVYMVDR 303 Query: 258 NIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVS 317 +PMLP+ELS+ +CSL N R + C++ +S G + D + + I SK ++ Y +V Sbjct: 304 VVPMLPKELSNGICSLHPNVDRLTMTCQIDISYAGEVID-YNIYESVICSKRRMSYKEV- 361 Query: 318 DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA-LVFKDRPDYRFILGEKGEVLD 376 NT P+ + E V ++ C RR +++ N A + D + +F++ +G VLD Sbjct: 362 ----NTS---PDLGEVQEMVSMMLD-CARRLQYKRNQAGQIGFDSAESQFVIDHEGNVLD 413 Query: 377 IVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGL 436 I R A ++E M+ AN A+ R + +Y VH D L+ L+ G Sbjct: 414 IFLRERGEAEEMIESFMVIANEVVAQHCRYQSIPVLYRVHEAPDREKMQELSHTLRILGY 473 Query: 437 HVDAE-EVLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAEISTEPGPHFGLGLEAYAT 494 + E + K + + +P + SR+ R + A+ S EP HFGL LE Y Sbjct: 474 RLKGNLEEIRPKEIQKALKFFEGKPEYPVVSRLMLRSMTKAKYSQEPLGHFGLALEDYTH 533 Query: 495 WTSPIRKYGDMINH-RLLKAVIKGETATRPQDE-------ITVQMAERRRLNRMAERDVG 546 +TSPIR+Y D++ H R+ + +K + + +DE + V ER L+ AER V Sbjct: 534 FTSPIRRYPDLLLHQRIKQYAVKHDFSKLEKDEQFTIEAGLHVSKKERSILD--AERQVE 591 Query: 547 DWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 A+F+ +K G + + I IS G+ V L Sbjct: 592 KIKKAQFMSNKIGEE--YVGFISGISNFGIFVEL 623 >UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepID=C0QZ67_BRAHW Length = 661 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 127/423 (30%), Positives = 205/423 (48%), Gaps = 33/423 (7%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL + VTID A ++D DDA+ + L +D +L + IAD + ++ GS LD+ A+ R Sbjct: 154 RIDLRDIRTVTIDGADSKDFDDAISIEKL-NDCYKLGIHIADVSHFVVMGSALDREARKR 212 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL PM P ELS+ +CSL R + +T+ G ++++ F + I+S Sbjct: 213 GNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNKGNVKEST-FHKSVIKSS 271 Query: 309 AKLVYD---QVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 +L YD V D +E DW E A+ V+ + + Q+R + N ++ F + + + Sbjct: 272 RRLTYDYAQDVLDGIEQDEDWLVELLKNADDVKKI--LLQKRID---NGSIEF-NLNETQ 325 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 IL + G D R+ ++I+EE M+ AN A+ L++ G IY VH D D Sbjct: 326 IILDKGGNPKDFFIGERKETHKIIEELMLIANCEVAKRLKNIKG-SIYRVHDSPDQEKLD 384 Query: 426 ALA--ALLKTHGLHVDAEEVLTLDGFCK-LRRELDAQPTGFLDSRIRRFQSFAEISTEPG 482 A + + L DA+ L F + + + D + L R + Q+ +++ Sbjct: 385 TFTRIAFNRGYRLTRDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMK-QAIYDVNN--I 441 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM---------AE 533 HFGLG E Y +TSPIR+Y D++ HRLLK ++G +P T+Q ++ Sbjct: 442 GHFGLGFEYYTHFTSPIRRYTDLLTHRLLKQSLEGVNNLKP----TMQQFYTNSAQWCSK 497 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R+ ER + ARF+KDK G + + + I+ GM V + D G I Sbjct: 498 TERIAVECERSLDKVKAARFMKDKVGNE--YNGIVSGITNFGMFVEIEDRGIEGLIRYAT 555 Query: 594 LHA 596 L + Sbjct: 556 LKS 558 >UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP Length = 736 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 123/439 (28%), Positives = 204/439 (46%), Gaps = 26/439 (5%) Query: 172 KEAPDGVATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 +EA + +E+ E + RED + +TID A +D DDAL + L +++ V IAD Sbjct: 261 EEAARQIPSEIPSEEMAKREDFREVFTLTIDPADAKDFDDALSWRKLEGGLVEVGVHIAD 320 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 + ++ GS +DK A RA + YL IPMLP L +DLCSLR NE R +C L+ Sbjct: 321 VSYYVTPGSVIDKEAYDRATSIYLVDRTIPMLPERLCNDLCSLRPNEARLAFSCVFVLNE 380 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENT-GDWQPESEAIAEQVRLLAQICQRRGE 349 ++ + IES + Y++ ++ GD ++E I + LAQ+ ++R Sbjct: 381 AAEVQ-SYRIGRTIIESNRRYAYEEAQQVIDTKEGD---DAEVIL-SLHSLAQLLRKR-- 433 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA----RVLR 405 R + + +F+L +G +D++A P AN ++EE M+ AN A + R Sbjct: 434 -RFAQGAINFSSQEVQFVLDAEGRPVDVMARPHGTANELIEEFMLLANRTVATEFGKKQR 492 Query: 406 DKLGFG---IYNVHMGFDPANADALAALLKTHGLHV-DAEEVLTLDGFCK--LRRELDAQ 459 + G IY +H D + + A ++ G +A E + + D Sbjct: 493 NSNGDAKTFIYRIHDLPDGDKLNQMGAFIRRFGYQFKNATEASAISKNLNAVIEASQDKP 552 Query: 460 PTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 + + R + AE STE H+GL E Y +TSPIR+Y D++ HRL+ + GE Sbjct: 553 EATLIQTMAVRTMARAEYSTENIGHYGLAFEYYTHFTSPIRRYPDLLVHRLVARYMAGEG 612 Query: 520 ATRPQDEITV---QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + PQ E +++ ++ AERD + ++ + G F I +++ G Sbjct: 613 SV-PQAEYEAYAQHCSDQEQVAAKAERDSVRYKQVEYMSTRLG--KVFDGVISNVAEWGF 669 Query: 577 RVRLVDNGAIAFIPAPFLH 595 V L + +P L+ Sbjct: 670 YVELTHSHCEGLVPMRLLN 688 >UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ2_PEDHD Length = 709 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 172/649 (26%), Positives = 286/649 (44%), Gaps = 60/649 (9%) Query: 24 GVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELV 79 G V T G F+ D + K F+ ++ +HGD++ I+++K E E E++ Sbjct: 81 GKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAKKSGRKNEGEVVEII 140 Query: 80 EPFLTRFVGKVQGKNDRLAIVP--DHPLLKDA-IPCR----AARGLNHEFKEGDWAVAEM 132 E T F+G ++ ++R A V D +L D +P A G + +W E Sbjct: 141 ERSKTDFIGVIR-ISERYAFVNVDDRKMLHDIFVPLNDLNGAKNGQKVQVSITEW--PEG 197 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTL---ARHNLEKEA-PDGVATEMLDEGLV 188 ++P+ + E + T + + L A LE A P+ V+ + Sbjct: 198 VKNPIGKIINILGEQGENNTEMNAILAQYGFPLSFPAEVELEANAIPEQVSAAEIKG--- 254 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R+D TID A +D DDA+ K L + ++ V IAD + ++ S LDK A R Sbjct: 255 RKDFRNTTTFTIDPADAKDFDDAISFKTLENGNYEIGVHIADVSHYVKPNSSLDKEAYAR 314 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT-IES 307 A + YL IPMLP LS+ +CSLR NE + A L + + E+F T I S Sbjct: 315 ATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFELDEKANLVN--EWFGRTVIHS 372 Query: 308 KAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 + Y++ + +EN GD+ E + E +L R + N A+ F + + +F Sbjct: 373 DRRFSYEEAQEVIENKAGDYAAEILKLNELAYIL------RDKKFKNGAISF-ESTEVKF 425 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG------IYNVHMGFD 420 L E G+ + + + R+ A++++E+ M+ AN A + K G G +Y H + Sbjct: 426 KLDETGKPIGVYVKERKDAHKLIEDFMLLANKKVAEFIAKK-GKGKQKYTFVYRSHDSPN 484 Query: 421 PANADALAALLKTHGLHV----DAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFA 475 N A G + D E +L+ L +++ + L R + A Sbjct: 485 LENLGNFALFAARFGYKINMKSDKEIAKSLN---YLMEDVEGKKEQNVLTQLAIRSMAKA 541 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-TATRPQDEITVQMA-- 532 +T+ H+GL + Y +TSPIR+Y D++ HRLL A + E +A + EI + Sbjct: 542 IYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNNEKSANEEEYEIAASHSSA 601 Query: 533 -ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 E+R + AER + A +L++ G FA I ++ GM V L +N I Sbjct: 602 MEKRAAD--AERASIKYKQAEYLEENVG--NIFAGIISGVTEWGMYVELTENKCEGMIR- 656 Query: 592 PFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L + D+ E V + + Y++ D + V + +V + R I Sbjct: 657 --LRDITDDFYVLDEKNYCIVGQRKQKKYQLGDEVQVKVKKVDLAKRQI 703 >UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_ALIAD Length = 903 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 169/640 (26%), Positives = 279/640 (43%), Gaps = 51/640 (7%) Query: 24 GVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKER-----ESAEPE 76 G ++ +G+GF+ E +A+ +I + M GDR++ + E+ + E Sbjct: 70 GRLQLKARGYGFVIPENEAEADIYILQTALNGAMSGDRVLVRLREERGKGAQAHREGEIV 129 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVP-DHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 +++E R VG++ + P D +D + A G H+ G V E+ + Sbjct: 130 KILERGNDRIVGQIAIYAHHAFVTPLDKRFPEDVFVPKDAVGNAHD---GQVVVVELTSY 186 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGLV- 188 P + + + + D+ V + ++NL + P+ V + +D + Sbjct: 187 P-TATHGPVGRVVEVLGYPDEPGVDILAIVRKYNLPEAFPEDVLADAERIPLEIDPAEIA 245 Query: 189 -REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R+D VTID +D+DDA+ K LP+ +L V IAD ++ E S LDK A Sbjct: 246 RRKDFRGETIVTIDGDDAKDLDDAVHVKRLPNGHYELGVHIADVGYYVKENSPLDKEAFR 305 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + YL IPMLP LS+++CSL R ++C M + G + + E + I + Sbjct: 306 RGTSVYLVDRVIPMLPPRLSNNICSLNPKVDRLTMSCVMEIDGQGRVVSH-EIVPSVIRT 364 Query: 308 KAKLVYDQVSDWLENTGDWQPESEA----IAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 ++ Y+ V LE+ + A + E++R LA I + + R + D + Sbjct: 365 AERMTYNDVRKILEDEDEELRARYAPLVPMFERMRELALILR---DKRMRRGAIDFDFDE 421 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG-IYNVHMGFDPA 422 + + + GE I PR IA RI+EE M+AAN A LG IY VH DP Sbjct: 422 IKVRVNDLGEPTSIEPRPRSIAERIIEEFMLAANETVAEHFH-WLGVPFIYRVHDEPDPD 480 Query: 423 NADALAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAEIST 479 L L G HV A + ++ E++ + + S + R A+ Sbjct: 481 KIIHLNLFLHNFGYHVKGSAGGKVHPRALQEVLNEVEGKREARMISMVMLRSMQQAKYRP 540 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV---------Q 530 E HFGL E Y +TSPIR+Y D+ HR+++ V+ + PQ E + Q Sbjct: 541 ECTGHFGLAAEYYTHFTSPIRRYPDLAIHRIIREVLT-RGSLSPQREAHLREFVAEASRQ 599 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 +ER R+ + AER+V ++ +A D F I + G+ V+L DNG I Sbjct: 600 SSERERIAQEAEREVDQLKMVEYM--QAHIDEEFDGIISGVVPFGLFVQL-DNGVEGLI- 655 Query: 591 APFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTI 628 + + D+ E I T V+++ D + V + Sbjct: 656 --HISELSDDYYVLHERQMALIGERTRRVFRIGDPVRVVV 693 >UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQN3_9PLAN Length = 770 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 136/501 (27%), Positives = 224/501 (44%), Gaps = 35/501 (6%) Query: 159 VPWWVTLARHNLEKEAPDG---VATEMLDE-----GLVREDLTALDFVTIDSASTEDMDD 210 V + ++L +E P+ VA EM D G R D T +TID D DD Sbjct: 222 VDLLSVMREYDLPEEFPEAALEVAREMADAFDESIGEDRRDETGETIITIDPFDARDFDD 281 Query: 211 ALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDL 270 A+ L + L V IAD ++ EGS LD A+ RA + YLP IPMLP +S++L Sbjct: 282 AISLTKLDNGHWLLGVHIADVAHFVPEGSALDTEARNRATSIYLPDKVIPMLPEVISNNL 341 Query: 271 CSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ--- 327 SL+ N++R ++ + DGT + E F + I S + Y++V ++L + W+ Sbjct: 342 ASLQPNKIRYAKTAKIEFTPDGT-RVHTEVFNSAIRSVRRFTYEEVDEYLADRDAWKKKL 400 Query: 328 -PESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIAN 386 P + + LA + R R + L+ P+ + L G V E ++ Sbjct: 401 TPPVHQLVGDMHELAMTLRERRFQRGSIELLM---PELKLDLDNDGAVTGAHVEKNTESH 457 Query: 387 RIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL 446 +I+EE M+AAN A L ++ F + VH DP +AL ++ G+ D +L Sbjct: 458 QIIEEFMLAANEAVADKLHNQELFFLRRVHDSPDPRKLEALTEFVRDVGIECD-----SL 512 Query: 447 DGFCKLRRELDA----QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKY 502 ++ R LD ++ R A S E H+ L E Y +TSPIR+Y Sbjct: 513 QSRFEIIRALDKVKGLPEQAAVNYATLRSMKKAVYSPEEIGHYALASECYCHFTSPIRRY 572 Query: 503 GDMINHRLLKAVIKGETATRPQDEITVQ---MAERRRLNRMAERDVGDWLYARFLKDKAG 559 D+ HR+ + G+ + D + + ++R + AERD+ L +K G Sbjct: 573 PDLTIHRMYNDLATGKKPVQDYDAMVAEGEHCSQREQRAASAERDLVKIKLLNHLSEKIG 632 Query: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE--NGTVQIKGETV 617 + A I + G+ V+ ++ A I + A++D+ + V + Sbjct: 633 ME--MEAVITGVESFGLFVQGLELPADGLI---HIDALQDDYYHYDRTTHSLVGNRDGNA 687 Query: 618 YKVTDVIDVTIAEVRMETRSI 638 +++ DV+ V+IA V +E R + Sbjct: 688 FRLGDVLKVSIARVDLEKREL 708 >UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LXJ9_DESBD Length = 701 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 170/650 (26%), Positives = 280/650 (43%), Gaps = 65/650 (10%) Query: 20 PRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEE 77 PR G + G G+L D QK FI P GD+++AV+ S ++++S PE Sbjct: 74 PRMTGTLDVRRSGVGYLIADDRKQKDLFIHPNNFGGAWPGDKVVAVVDSSRKKDS--PEG 131 Query: 78 LVEPFLTRFVGKVQGKNDRL------------AIVPDHPLLKDAIPCRAARG--LN---- 119 V L R ++ + R + +P + ++ + +G L+ Sbjct: 132 RVVEVLDRATRELLVRVSRRIHQDSYFCHPTDSRMPFYTVVDTSDVPNPEKGDILSVAPV 191 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 E ++G W +RR L +R TQ + + +P + + PD + Sbjct: 192 EEQEKGIWRCTALRR--LGEERDL---ATQELLVKTGYSIPEVFPVPALRQAEALPDTPS 246 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + E R DL L VTID + +D DDA++ + ++ +L+VAIAD ++ EGS Sbjct: 247 PQDWAE---RNDLRKLALVTIDGETAKDFDDAVYVER-QENGYRLVVAIADVAHYVPEGS 302 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD A R + Y P PM P LS+ LCSLR R + S DG Sbjct: 303 PLDVEALARGNSYYFPLSVEPMFPEALSNGLCSLRPKVARLAMVVDTPYSMDGE-PGAPR 361 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDW-QPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 + A I S+A+L Y+QV L+ T D E + LA+I +R R + + Sbjct: 362 LYNAVIMSQARLTYNQVQAALDGTPDQDTAELLPMLRDAEELAKIFMKR---RMDRGCLD 418 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 D P+ + + E +++ + A R ++R++EE MIAAN A + + Y +H Sbjct: 419 FDIPEAQVRVIE--DIISVHAGTRLFSHRLIEEFMIAANERVAEYMGARQRVFPYRIHPQ 476 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEI 477 D + L +L L + + G + +L +R I R A+ Sbjct: 477 PDEKKLETLLRMLSHTSLVDRLPKEMNQMGLQHISHAAKGTDIEYLVNRLILRTMMQAQY 536 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEIT-----VQMA 532 S E H+GL AY +TSPIR+Y D++ HR LK +I GE ++ + Sbjct: 537 SPENDGHYGLASVAYCHFTSPIRRYADLLVHRSLKRLIAGEPEKMSMGDVQGICEGLNAL 596 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTR----------FAAEIVDISRGGM-RVRLV 581 ER+ + AER++ L+D+ G + R F E++D+ G+ R+ + Sbjct: 597 ERKAME--AEREIQKRSAILALEDRIGEEMRGVVSGVADFGFWVELLDMPVDGLVRLATL 654 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 D+ + F P R +L+ Q G G+T+ V + + + E+ Sbjct: 655 DDFYV-FDPE------RQDLL-GQRTGKTFAMGQTLNVVLEAVSLERVEI 696 >UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECD1_9CLOT Length = 716 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 161/618 (26%), Positives = 282/618 (45%), Gaps = 52/618 (8%) Query: 45 FIPPPQMKKVMHGDRIIAVIHSE-KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDH 103 FIP + + GD ++ ++ + E + + + + F G + +++ + PD+ Sbjct: 93 FIPGKYSRGAILGDLVLVRPQAQLGDSEEGQVFSIYKNGPSAFSGVLMQEDEDYFVQPDN 152 Query: 104 PLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDR--SFYAELTQYITFGDDHFVPW 161 L KD IP R+ + K GD +A++ L+G R ELT + Sbjct: 153 -LSKDRIPVRSKS--IGDAKPGDKVLAKV---VLRGSRHSEHICELTGAYGSAETAAACA 206 Query: 162 WVTLARHNLEKEAPDGV---ATEMLDEGLV------REDLTALDFVTIDSASTEDMDDAL 212 L H + +E P V A + ++G+ R DLT L TIDSA ++D+DDA+ Sbjct: 207 RAVLDAHGITEEFPQEVLEQARSISEQGIRDSERVHRLDLTDLPIFTIDSADSKDLDDAI 266 Query: 213 FAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCS 272 + +D + V IAD + ++ + LD+ A R + Y IPMLP+ELS+ +CS Sbjct: 267 SIEK-AEDCYHVGVHIADVSHYVGYRTPLDQEAFRRGTSIYYANRVIPMLPKELSNGICS 325 Query: 273 LRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD---WQPE 329 L E R + M +S DG + D F I S+ K VY +V+ LE D Q Sbjct: 326 LNPQEDRLAFSALMNVSLDGELMD-FTFRKTVIRSRVKGVYKEVNALLEGGADEDLKQKY 384 Query: 330 SEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIV 389 SE + ++L+ ++ QR + + + + + I+ E +DI + ++ ++ Sbjct: 385 SEVLP-SLQLMHELYQRLFQNKVKRGAPQLETSESKIIVDENDVAVDIQPRVQGLSEGMI 443 Query: 390 EEAMIAANICAARVL-RDKLGFGIYNVHMGFDPANADALAALLKTHG---LHVDAE-EVL 444 EE M+ AN AA + R+KL F +Y +H P +L +L+ G L VD + + Sbjct: 444 EEFMLLANEAAATLAKREKLPF-VYRIHEHPSPEKLSSLKEILERLGLPSLRVDKKVKPG 502 Query: 445 TLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGD 504 L G R+ P +++++ R + A+ P H+GL LE YA +TSPIR+Y D Sbjct: 503 VLAGILTSSRDSGLFP--IINTQVLRSMAKAQYDERPVGHYGLALENYAHFTSPIRRYPD 560 Query: 505 MINHRLL-KAVIKGETATRPQ---DEITVQMAERRRLNRMA----ERDVGDWLYARFLKD 556 + HR+L + V+ ET + D+ Q +++ + ER+ D A +++ Sbjct: 561 LTIHRILTEYVVLHETPDKIHKRYDKFVAQASKQSTETEITAMQIERECNDRYKAEYIRQ 620 Query: 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET 616 G + F I + G+ + L +N ++ L+ + + +G ++K Sbjct: 621 HIGEE--FDGIITSVLGRGLYIEL-ENTVEGYVKVEDLNGI------YEHDGFTELKNHQ 671 Query: 617 V---YKVTDVIDVTIAEV 631 Y+V D + + V Sbjct: 672 TGKRYRVGDKVRIQCVAV 689 >UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegleria gruberi RepID=D2UXR9_NAEGR Length = 1053 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 115/414 (27%), Positives = 194/414 (46%), Gaps = 22/414 (5%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L+ V++D D+DDAL A LPD +++ V IAD T ++ EG+ +D A R Sbjct: 516 RRDLRHLNIVSVDPPGCTDIDDALHAIQLPDGSIEIGVHIADVTNFVKEGTAIDIEAAKR 575 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL I MLP L+++LCSLR + R + S +G I+ ++++ + I S+ Sbjct: 576 GTTVYLVDRRIEMLPSLLTNNLCSLRQHVDRLAFSVIWKFSPEGDIK-SVDYTKSLIRSR 634 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 + Y++ + D + + +A +RLL QI + + R+ + P +F + Sbjct: 635 KSMTYEEAQKVI----DDKERDDELATDLRLLMQISKILKKKRNEAGSLTLASPAVKFSM 690 Query: 369 -GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-GIYNVHMGFDPANADA 426 E D+ R N +VEE M+ ANI A+ + + H +P + Sbjct: 691 EAESSNPTDVELYQLRETNSMVEEFMLLANIAVAKKITKEFPMVACLRRHPPVNPKKFEP 750 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQS----------FAE 476 L +LK HG+++D L+ R ++D+ +R + + Sbjct: 751 LLEMLKRHGINLDISSSKILNETLSNIRSSGLIKDKYMDTLVRIMVTRCMEQAVYFISGD 810 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRR 536 S E H+GL + Y +TSPIR+Y D+I HRLL A I T +++T + RR Sbjct: 811 CSQEEYWHYGLAVPIYTHFTSPIRRYADVIVHRLLGAAIGYYPLT---EKVTDREYSRRL 867 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 +N + +R+ YA+ + T+ F + + R + ++ NG + FIP Sbjct: 868 MNDLNKRNRMSQ-YAQRSSVELYTNVYFNSNPITSERAYI-TQMKSNGIVVFIP 919 >UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KPF2_CLOPH Length = 716 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 144/552 (26%), Positives = 237/552 (42%), Gaps = 53/552 (9%) Query: 24 GVVKATEKGFGFLEVDAQKS---YFIPPPQMKKVMHGDRIIAVIHSEKE--RESAEPEEL 78 G+ T +GFGF++++ +++ FIP + K ++ DR+ I E+ R + Sbjct: 75 GIFSGTTRGFGFVKIEGEENEEDIFIPESETKGALNKDRVQIAIFEEQSGRRREGAVISI 134 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 +E +T VG Q + ++ D N +F + E + + Sbjct: 135 LERNVTELVGTFQKSKNFGFVIAD----------------NTKFNSDVFIPKEHTKGAVN 178 Query: 139 GDRSFYAELTQY--------------ITFGDDHFVPWWVTLARHNLEKEAPDGV--ATEM 182 G + +LT Y I +D V + + L E PD V E Sbjct: 179 GHKVL-VQLTDYGSETKNPEGKIIKIIGHINDPGVDVVSVILENGLPTEFPDEVMKQVER 237 Query: 183 LDEGLV------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + E + R DL L VTID +D+DDA+ + D QL V IAD + ++ Sbjct: 238 IGEEVSSADIGGRVDLRNLQTVTIDGEDAKDLDDAI-TLSKKGDIYQLGVHIADVSNYVT 296 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S LDK A R + YL IPMLP +LS+ +CSL A R L+C M + G + Sbjct: 297 EDSPLDKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGSDRLALSCMMEIDEKGNVVG 356 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQ-PESEAIAEQVRLLAQICQRRGEWRHNHA 355 + I ++ Y V +E+ + + E + + L+ ++ E R Sbjct: 357 H-RIAETVINVDRRMTYTSVKKIIEDHDEAEIEEYKELVPMFELMLELADILREKRRKRG 415 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYN 414 + D P+ + IL G DI R A +I+E+ M+ AN A +L F +Y Sbjct: 416 SIDFDFPESKIILDSDGRPTDIKPYERNKATKIIEDFMLIANETVAEDFFWQELPF-VYR 474 Query: 415 VHMGFDPANADALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-RF 471 H D L+ + G + + +E+ + KL ++D +P L SR+ R Sbjct: 475 THENPDLEKIQKLSVFINNFGYTMRIGQDEIHPKE-LQKLLIKIDGKPEEALISRLTLRS 533 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM 531 A+ +T HFGL + Y+ +TSPIR+Y D+ HR++K ++G + + + Sbjct: 534 MKQAKYTTTCDGHFGLSTKYYSHFTSPIRRYPDLQIHRIIKENLRGGLKEKRINHYESIL 593 Query: 532 AERRRLNRMAER 543 E R + +AER Sbjct: 594 NEVARQSSLAER 605 >UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8V5_ACIC5 Length = 920 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 175/727 (24%), Positives = 280/727 (38%), Gaps = 133/727 (18%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFL---EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 L Q HS+ G + G+GF+ + DA FIPP ++ M GD+++ + + Sbjct: 61 LAQAAHSRDNLVAGRLDLHRDGYGFVRPAQRDAAGDIFIPPNEIGTAMQGDQVLVEVFPK 120 Query: 68 KERESAEPEELVEPFLTRFVGKVQGK--------------------------------ND 95 + E +V LTR V GK ++ Sbjct: 121 RPGEDRMAGRIVR-VLTRRNPTVVGKFHYGNVGGNAGGGRRGGRERGPQYPGHYVVPFDE 179 Query: 96 RLA---IVPDHPLLKDAIPCRAARGLNHEFK------EGDWAVAEMRRHPLKGDRSFYAE 146 R+ I+P L +A+ R L E + EG E+ P R Sbjct: 180 RMTQPVIIPLDEPLPEAVVASPHRVLGEEVRQQFDDLEGLVVDVEITEWPTP-TRPARGR 238 Query: 147 LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-----LDEGLV--REDLTALDFVT 199 + + + D V + + +H+L P+ V E LD +V R D L VT Sbjct: 239 VIEVLGEEDAFGVDVEMMIRKHHLPHVFPENVLAEAREVAHLDGEVVAARRDFRDLPIVT 298 Query: 200 IDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNI 259 ID + D DDA+ + D +L V IAD ++ S LD A++R + Y P I Sbjct: 299 IDGETARDFDDAVLVREHGDGTWELQVHIADVAQYVTPESALDLEARLRGTSVYFPDRAI 358 Query: 260 PMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDW 319 PMLP+ELS D+CSLR E R VL+C M + A G + E I S ++ Y QV Sbjct: 359 PMLPQELSTDICSLRPGEDRLVLSCLMQMDAHGQV-TGYEVTEGVIRSAQRMTYTQVQAI 417 Query: 320 LENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVA 379 L+ + + + + + ++ Q R + D P+ E G + + Sbjct: 418 LDGDAETRDAFRPLVPEFERMYRLAQILNAKRERRGSIDFDLPEPVIEFDEFGAMKAVTR 477 Query: 380 EPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGL--- 436 R ANR++EE M++AN C A L + IY +H +P + + G Sbjct: 478 AERLWANRLIEEFMLSANECVASWLENLAVPAIYRIHEKPEPRRVVEFEEIAASFGYSLG 537 Query: 437 -------------------------------HVDAEEV-LTLDGFCKLRRELDAQPTGFL 464 H AE++ +T + KL +L +P + Sbjct: 538 IGNLPVKRFHTRGERRDQRRDGRGGRRETRAHEVAEDIAVTPQMYQKLTAKLAGKPEERI 597 Query: 465 DSRIR-RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 + + R A S + HF L AY +TSPIR+Y D++ HR+ KA+++ Sbjct: 598 VAYLMLRSLKQARYSEKNEGHFALAAPAYTHFTSPIRRYPDLMVHRIAKALLEAGV---- 653 Query: 524 QDEITVQMAERRRLNRMAERDVG-----------------------------------DW 548 D V R++++A D G +W Sbjct: 654 -DGHGVVAMGDARVHKVAPSDAGQAQEAAPFDEVELAAIAQETSDTERRAAEAERELVEW 712 Query: 549 LYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG 608 +F++D+ G D F I+ ++ G+ V L D +P L A+ + +EN Sbjct: 713 KKIKFMRDRVGED--FDGLILSATKYGLFVELEDLFIEGLVPIQSLGALDGDRYSYREN- 769 Query: 609 TVQIKGE 615 T +I G+ Sbjct: 770 TREIIGD 776 >UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4W7_SLAHD Length = 670 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 159/551 (28%), Positives = 243/551 (44%), Gaps = 60/551 (10%) Query: 21 RAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESA------E 74 R GV+ T G+ F++ A+ +FIP ++ GD + S ER S Sbjct: 5 RPRGVLNMTSAGYAFVQT-AEGEFFIPASKVHDAFDGDVVEVSRLSSSERGSYAQAGPDR 63 Query: 75 PEELVEPFLTR----FVGKVQGKNDRLAIVPDHPLLK-DAIPCRA-ARGLNHEFKEGDWA 128 P V + R VG+ + +VP+ P +K D RA A + H GD Sbjct: 64 PAARVVRVVLRAHESIVGRYEVAEPFGIVVPEDPRIKHDIFTLRADAPHVQH----GDIV 119 Query: 129 VAEM-----RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV----- 178 M RR P +G + + + D + + +ARH LE + V Sbjct: 120 RVRMTVYPNRREPAQG------VVEEVLGHVGDAGMDVELIVARHKLETKFSPKVLEDVA 173 Query: 179 -----ATEMLDEGLVREDLTALDFVTIDSASTEDMDDAL-FAKALPDDKLQLIVAIADPT 232 E L G R+ + F TID A +D DDAL F K L+L V IAD + Sbjct: 174 HAAVGEAEALSSGDYRDIRNRVVF-TIDPADAKDFDDALSFDKV--GGYLRLGVHIADVS 230 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ S D A+ R+ + YL +PMLP LS+D+CSLR E R + + L+ Sbjct: 231 HYVPWNSPTDLEARRRSTSVYLVDRVVPMLPEVLSNDVCSLRPREPRRAMTVDLYLTETF 290 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENT-GDWQPESEAIAEQV---------RLLA- 341 ++ +++ + + IES A+L YD V + + G +P + ++ + V RLL Sbjct: 291 SVH-HVDAYPSIIESCARLDYDTVQECFDRVAGGERPAAVSMLQDVCKDPESVLVRLLGL 349 Query: 342 -QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 ++ E R + D + + L ++G + + A +VEEAMIAAN Sbjct: 350 KRVSVGLHERRLKRGGLDFDGVEAKVRLDDEGRPVGVDIRKTTQATSLVEEAMIAANEAV 409 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP 460 AR+LRD IY VH + AL +L+ G D G +++ A+ Sbjct: 410 ARLLRDGAIPSIYRVHEPPATGDLSALIPILQEFGYDSDVSMSRFAAGDPFAIQKVIAKA 469 Query: 461 TGFLD-----SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 G L+ + + R + A PHFGLG EAY +TSPIR+Y D++ HR+LK + Sbjct: 470 KGRLEEPLVSTLVVRAMTQARYVDACEPHFGLGSEAYTHFTSPIRRYPDLVVHRMLKVKL 529 Query: 516 KGETATRPQDE 526 G T T +E Sbjct: 530 FGRTETTSAEE 540 >UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIL7_EGGLE Length = 701 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 184/705 (26%), Positives = 299/705 (42%), Gaps = 102/705 (14%) Query: 20 PRAE--GVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI-IAVI----------HS 66 PR+ GV+ GFGF++ A+ +F+P +M GD + +A + H Sbjct: 12 PRSNPRGVLSVRGGGFGFVQT-AEGEFFVPESKMAGAFDGDLVEVAPLPVQSGRKKQPHE 70 Query: 67 EK------ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVP-DHPLLKDAIPCRAARGLN 119 K E+ +A +V+ VG+ + +VP D + D RA R Sbjct: 71 RKADLRAGEKPAARVLRVVDRAHDTLVGRYEVAEPFGVVVPEDANIPYDIFTMRADR--- 127 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 + ++G + P + + + + + + DD V +ARH LE +G Sbjct: 128 PDIEDGSLVRVRITTFPSR-NTAATGVIEEVLGLADDEHAAVDVVIARHKLETVFSEGAL 186 Query: 180 TE----MLDE----GLVREDLTALDFVTIDSASTEDMDDALF-----------------A 214 +E +LDE DL TID A D DDA+ Sbjct: 187 SEARSAVLDEDGALASGYRDLRERFTFTIDPADARDFDDAVSLEPVSTCGVGTGIRVVDE 246 Query: 215 KALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274 + L + +L V IAD ++ S LD A+ RA + YL IPMLP ELS DLCSL+ Sbjct: 247 RGLGVARWRLGVHIADVAHYVPWNSSLDLDARRRATSVYLVDRVIPMLPDELSGDLCSLK 306 Query: 275 ANEVRPVLACRMTLSADGTIEDN-----IEFFAATIESKAKLVYDQVS------------ 317 +EV R T++AD ++D + + A I S A+L Y++ Sbjct: 307 PDEV------RRTMTADLYLDDRARLVAYDLYPALIRSHARLSYEEAQALLDRCHPERSA 360 Query: 318 ------DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK 371 D + G P + +++++ L+++ ++R R + D + R +L E+ Sbjct: 361 EGAESKDLVRRDGACAP-GDGLSDRLAALSRLAKQRFASRERAGGLDFDSVEARVVLDEE 419 Query: 372 GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALL 431 G I + A ++EEAMI AN A+ LRD +Y VH + +AD+LAAL+ Sbjct: 420 GSPTGIDLRVKTDATSLIEEAMILANETVAKHLRDAKFPSLYRVH---EQPSADSLAALV 476 Query: 432 KTHG-----LHVDAEEVLTLDGFCKLRRELDA---QPTG-FLDSRIRRFQSFAEISTEPG 482 +D + + D ++R L+A +P G + + + R A + Sbjct: 477 PVFQDFAWFRDIDQADFIAGDAHV-VQRVLEASAERPEGELVSTLLLRSMKRAVYRPDCA 535 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-----ITVQMAERRRL 537 H+GL AY +TSPIR+Y D++ HR+LKA+I G Q++ I ++ R+ Sbjct: 536 AHYGLASGAYTHFTSPIRRYPDLVVHRMLKALIGGRPEKFDQEKSALPWIAEHSSDMERI 595 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 A R+ + +L+ G F+A + ++ G VRL DN A IP L + Sbjct: 596 AEKAARESQEVKLIEYLERFVGQT--FSATVSGVATYGAYVRL-DNTAEGLIPCKNLGSE 652 Query: 598 RDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 L Q T Q G + Y++ + V + R + RP Sbjct: 653 YFALDPVQHRLTGQDTGAS-YRLAQRLAVVLVSADPRARRLDFRP 696 >UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVY9_9BACE Length = 710 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 151/525 (28%), Positives = 229/525 (43%), Gaps = 50/525 (9%) Query: 24 GVVKATEKGFGFLEVDAQKS----YFIPPPQMKKVMHGDRIIAV----IHSEKERESAEP 75 GV + T +GFGFL + KS YFIPP GD++ A I E+ R +A Sbjct: 12 GVFQGTSRGFGFLVPEDGKSREDDYFIPPRATGGAWDGDKVQASPDPEIPWEEGRRTATV 71 Query: 76 EELVEPFLTRFV-GKVQGKNDRLAIVPDHPLLKDAIPCRA-ARGLNHEFKEGDWAVAEM- 132 + E RFV G V+ L + PD L I A+G+ + G+ EM Sbjct: 72 VRVTE-RANRFVTGTVEKLGRELWMRPDSDKLPGPIKISGKAKGV----RIGEKIAVEML 126 Query: 133 -----RRHPL---------KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV 178 + P+ G+R Y D F P + A AP V Sbjct: 127 GYGTAKTPPMGALRETFGPAGNRESSTAAILYHYEIDPEFPPAVLDAA-----ARAPREV 181 Query: 179 ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 + L R DL +TID AS++D+DDA+ + + L V IAD + ++ E Sbjct: 182 EKDALTG---RTDLRNRIIITIDGASSKDLDDAVSLERDEQGRWVLGVHIADVSHYVQEK 238 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S LD A R + Y IPMLP ELS+ +CSL R ++C MTL+ADG ED+ Sbjct: 239 SPLDLEAWERGTSVYFADRVIPMLPVELSNGICSLNPGVDRLTISCFMTLAADGREEDHT 298 Query: 299 EFFAATIESKAKLVYDQVSDWLENTG-DWQPESEAIAEQVR---LLAQICQRRGEWRHNH 354 + I S ++ Y+ + L D + I +R +LA++ ++R + R + Sbjct: 299 -ICKSVIRSTERMTYEDCNKLLAGEDPDLEKRYNNILPMLRDMAVLARVLEKRRKLRGSL 357 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 L + + I E G+ +DI + + ++E M+AAN C AR L D+ +Y Sbjct: 358 DL---ETSESYIICDEHGKPVDIKVRKQGESEALIESFMLAANECVARHLFDRHKPAVYR 414 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQS 473 VH A+ L +L G + L K+ + +P + + + R Sbjct: 415 VHEKPSQDKAEGLKTMLAPFGYTFQEADSFALQ---KILEDTKGKPEAPIISTMVLRSLM 471 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 A + HFGL + Y +TSPIR+Y D++ HR+L V+ E Sbjct: 472 KARYDVQNLGHFGLAAKYYCHFTSPIRRYPDLMVHRVLTQVLADE 516 >UniRef50_UPI00019779BC hypothetical protein HcinC1_09125 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779BC Length = 692 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/339 (28%), Positives = 174/339 (51%), Gaps = 23/339 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL+ L F ID +D DDA++ L VAIAD + +++ S+LD+ AK R Sbjct: 223 RADLSHLPFCVIDPIDAKDHDDAIYFDV---KSRTLYVAIADVSEYVSFNSELDREAKKR 279 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 F+ Y P +PMLP LS +CSL+ NE+R + ++L+ ++ + F A I+S Sbjct: 280 GFSLYFPHKVLPMLPFALSSGICSLKQNELRLAMVWEISLNTKAEVKKS-RLFEALIQSH 338 Query: 309 AKLVYDQVSDWLENTGDWQPE-SEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 A + Y+++ +L+N + +++ + ++ ++ + R N FK+ + + Sbjct: 339 ANVSYEEIESFLQNKSVKSTQLPDSVTQWLKAYVPFVKKCRKNRLNVGFDFKNE-EIKLK 397 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 + E+ + +A+ I+EE+M+ AN+ +A++L GI+ +H D L Sbjct: 398 FNKSMEISSWQKNTQSLAHSIIEESMLLANVESAKMLDS----GIFRIHPPPQLERIDEL 453 Query: 428 AALLKTHGLHV-DAEEVLTLDGFCKLRRELDAQPT----------GFLDSRIRRFQSFAE 476 L++ G V +++ TL +++ + D +D + + S A Sbjct: 454 RWDLESMGYEVPRTQDIHTL--ITQIQAQADENDNAKISQNDNQRAIVDGLMIKSLSKAT 511 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 S++P HFGLG E+Y +TSPIR+Y D+I HR+LKA++ Sbjct: 512 YSSKPLAHFGLGFESYTHFTSPIRRYSDLIVHRILKAIL 550 >UniRef50_Q7VIS0 Putative uncharacterized protein n=1 Tax=Helicobacter hepaticus RepID=Q7VIS0_HELHP Length = 614 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 107/348 (30%), Positives = 172/348 (49%), Gaps = 26/348 (7%) Query: 176 DGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 D V EM R DL+ L F ID D DDA++ ++ L VAIAD + ++ Sbjct: 172 DEVCKEMYPH---RVDLSHLPFCVIDPKDARDHDDAIYFESKTKT---LYVAIADVSEYV 225 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 + S LDK A+ R F+ Y P +PMLP ELS +CSL+ N+VR + ++TL + ++ Sbjct: 226 SCESVLDKEARQRGFSIYFPHKVVPMLPFELSSGICSLKENKVRLAMVWKITLDKNAQVQ 285 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + E A I+S A + Y+ + +L+ P+ I + ++ ++ R + Sbjct: 286 KS-ELLEAFIQSHANVSYENIESFLQGHKSTLPKE--IQKWLKAYLPYIKKHRAMRLQYG 342 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 F+ + + L E + +A+ I+EE+M+ AN+ +A +L + GI+ + Sbjct: 343 YEFQSN-EIKLELDEYQNISSWHKVEHTLAHSIIEESMLLANVQSALMLINNTQKGIFRI 401 Query: 416 HMGFDPANADALAALL---KTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-----FLDSR 467 H P + + +LL K G + + TLD F L + Q G LD Sbjct: 402 H---PPPKEERIQSLLWEIKNMGFELPS----TLD-FHSLILAIQNQVKGSNMAEVLDDM 453 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 I + + A S HFGLG E+Y +TSPIR+Y D+I HR+LKA++ Sbjct: 454 IIKSFAKATYSVINIGHFGLGFESYTHFTSPIRRYSDLIVHRILKALL 501 >UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF96_ACHLI Length = 728 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 103/336 (30%), Positives = 165/336 (49%), Gaps = 12/336 (3%) Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 E R D+T VTID A +D+DDA+ + L + +L V IAD + ++ EGS L++A Sbjct: 216 ERKTRRDITDKLVVTIDGADAKDLDDAISLEYLENGNFKLGVHIADVSYFVKEGSYLNEA 275 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A RA + YL IPM+P LS+DLCSL NE + + C M L+ D + N + +A+ Sbjct: 276 AYNRATSVYLADRVIPMIPHGLSNDLCSLNPNEDKYTITCEMELNPDIEVV-NYDIYASI 334 Query: 305 IESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL---AQICQRRGEWRHNHALVFKDR 361 I+SK +L Y V+ + + +S E ++L +I Q+ + R + + Sbjct: 335 IQSKHRLTYHDVNQLFK-----EHQSTGFKEVDKMLFTMNEIAQKLKQIRTKRGAIDFNS 389 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 + +F+L G+VL + A ++E MI AN +R GIY VH Sbjct: 390 TELKFVLDVNGDVLGVEERTTDEAEALIESFMILANETVSRHFFFNDLPGIYRVHEKPTS 449 Query: 422 ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRI--RRFQSFAEIST 479 D G VD + +L +++ P ++ + I R Q A S Sbjct: 450 EKLDIAFESSAKLGFRVDQSAKSSAQKLQRLTKKVAQTPYEYIINMILLRSMQK-AIYSE 508 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 +P HFGL Y+ +TSPIR+Y D++ HR+++ ++ Sbjct: 509 KPIGHFGLASAYYSHFTSPIRRYPDLLLHRMIRDLM 544 >UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVJ8_9CLOT Length = 699 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/348 (32%), Positives = 170/348 (48%), Gaps = 22/348 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKL--QLIVAIADPTAWIAEGSKLDKAAK 246 R DL TID A +D+DDA+ ++ D +L V IAD + ++ EGS +D+ AK Sbjct: 240 RADLREQLIFTIDGADAKDLDDAI---SVEKDGAGWKLGVHIADVSHYVKEGSLVDEEAK 296 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 R + Y IPMLP LS+ CSL A E + +C MTL G + F + I Sbjct: 297 QRGTSVYFADRVIPMLPEALSNGCCSLNAGEEKLAFSCFMTLDRKGNLR-GYRFQKSVIC 355 Query: 307 SKAKLVYDQVSDWLENTG------DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 SK + VYD+V+ LE +QP ++ + + LAQ+ + +G R + Sbjct: 356 SKVRGVYDEVNQVLEGCAAERLKEKYQPVLASL-QAGQELAQLLEAKGRRRGTMDF---E 411 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD-KLGFGIYNVHMGF 419 + RF L G +DI+ + ++ +++E+ MI AN AA + ++ F +Y VH Sbjct: 412 SSEARFFLDRNGTCVDILPRSQGLSEKMIEQFMILANQAAALYAKCLEIPF-VYRVHEDP 470 Query: 420 DPANADALAALLKTHGLHVD--AEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAE 476 DP + L L GL E V + D L R+ + P ++ ++ R + A Sbjct: 471 DPERLNTLQQLAAGLGLRARRIQEGVRSAD-LSDLLRQAEGTPAQNIINHQVLRTLAKAR 529 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 +P HFGL L+ Y +TSPIR+Y D HR+L V +G T R Q Sbjct: 530 YDNKPLGHFGLNLDDYCHFTSPIRRYPDTAIHRILTGVAEGITVDRLQ 577 >UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN Length = 726 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 134/478 (28%), Positives = 207/478 (43%), Gaps = 70/478 (14%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R+DLT L FVTID A+++D+DDA++ K D L VAIAD ++ S+LD A+ + Sbjct: 264 RKDLTELAFVTIDPATSKDLDDAIYVKR-TDKGFVLYVAIADVAYYVQRNSELDIEARHK 322 Query: 249 AFTNYLPGFN-IPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 + YLPG+ +PMLP LS++LCSL NE R V+ C + + + + E + ATI S Sbjct: 323 TSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDHEARLNFS-EVYPATIVS 381 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVR-------LLAQICQRRG--EWRHNHALVF 358 + + Y +V+DWLE++ + ES + E ++ L+A+ +++G + H+ V Sbjct: 382 QRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSELIAEQRKKKGTIDLSHSETEVV 441 Query: 359 KDRPDY----RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 D+ Y RF+ K E + +E M+ AN A L + Y Sbjct: 442 VDQNYYPIEIRFLTHGKAETM-------------IENLMVVANEAVAWTLTNHKVHLPYR 488 Query: 415 VHMGFDPANADALAAL-----LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 VH P+ L LK + + V + L+ D + Sbjct: 489 VHPR--PSKKKLQMLLENIVELKITQPNFVLDTVTSTQIAAWLKENKDNPSYDIFVILLL 546 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV 529 R A P HF +G Y +TSPIR+Y D+ HRLL + T R D Sbjct: 547 RTLGKAFYIVNPLIHFSIGSHHYTHFTSPIRRYADLTVHRLL--WMNLFTPERFTD---- 600 Query: 530 QMAERRRLN-----------------RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 ER +LN ER D+L +L + G F I I+ Sbjct: 601 --TEREQLNAELEQICETINDTEIKINGCERTANDYLTTLYLSKQVG--QTFHGFISAIT 656 Query: 573 RGGMRVRLVDNG-----AIAFIPAPFLHAVRDELVC--SQENGTVQIKGETVYKVTDV 623 G+ +R+ +N I IP F +D +V + N +I K+T++ Sbjct: 657 SFGIFMRMDENNFDGLIKITSIPEDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEI 714 >UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUX4_OPITP Length = 833 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 170/647 (26%), Positives = 269/647 (41%), Gaps = 74/647 (11%) Query: 57 GDRIIA-VIHSEKERESAEPEELVEPFLTR----FVGKVQGKNDRLAIVPDHP--LLKDA 109 GDR++ V + R E VE L R VG ++ + +VPD P + + A Sbjct: 198 GDRVVVRVFAGRRGRRPGEKIGGVERVLERGRDTVVGDLRRRGRDYLVVPDDPRFVYEVA 257 Query: 110 IPCRAARGLNHEFKEGDWAVAEM----RRH-PLKGDRSFYAELTQYITFGDDHFVPWWVT 164 + A G+ + GD V ++ RRH PL G E+ + + Sbjct: 258 VSDPARSGVKPAPQPGDKVVVKLHAWNRRHDPLTG------EIESRLGRTHEPQAELLAI 311 Query: 165 LARHNLEKEAPDGV---ATEMLDEGLVREDLTALDF-----VTIDSASTEDMDDALFAKA 216 ++NL P V A + D RE LD+ TID +D DDAL + Sbjct: 312 FQKYNLVTTFPADVEREAATLPDRVHPRELAGRLDYREQPVFTIDPDDAKDFDDALSYEP 371 Query: 217 LPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 276 L +++ + IAD + ++ G+ LD+ A+ R + YL G IPMLP +LS+ LCSL Sbjct: 372 LHGGDVRVGIHIADVSTYVRPGTALDREAQRRGNSTYLVGTVIPMLPEKLSNGLCSLVEG 431 Query: 277 EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL---------------- 320 + R A +T + +G +++ F I S+ +L Y Q + Sbjct: 432 QDRLCKAVFLTFAKNGRLKETT-FANTAIRSRKRLTYKQAYALMFEHDLDRIRALPLPPK 490 Query: 321 ENTGDWQPESEAIAEQ--------VRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKG 372 TG A+++ VR L +I R R H + D P+ + + E+G Sbjct: 491 HQTGSTGRALSALSDAELVDLQSWVRALWKIASRLRHDRMAHGSLDLDMPETKIFVDEQG 550 Query: 373 EVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLK 432 + +++++EE M+AAN AR+ R +Y VH DP D LL Sbjct: 551 YADRLEKIEHDESHQLIEEFMLAANEALARLTRTHSLPSLYRVHDEPDPDKLDEYRQLLA 610 Query: 433 THGLHVDAEEVLTLDGFCKLRRELDAQPTGFL--DSRIRRFQSFAEISTEPGPHFGLGLE 490 T +H ++ + KL R L P G+ +R + A +T G HFGL + Sbjct: 611 TFDIHTG--DLTRREELVKLIRTLSTHPQGYTLRTQLLRSLRKAAYRATADG-HFGLNKK 667 Query: 491 AYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV-------QMAERRRLNRM--- 540 Y +TSPIR+Y D++ HR+ + RP T + E L + Sbjct: 668 DYTHFTSPIRRYADLVVHRVFDFYLVKHQGGRPAHGHTSYNLGHVESLGEHLSLTEINSA 727 Query: 541 -AERDVGDWLYARFLKDKAG--TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 AER+ F + + T FAA + D+ + G V LV++ F+P H + Sbjct: 728 EAERESVKVKLLEFFERELAKKKKTPFAAVVTDVRQNGFFVELVESMTFGFVPT---HTL 784 Query: 598 RDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVRMETRSIIARP 642 D+ GT+ + + + V D I+V + +V R I RP Sbjct: 785 SDDHYVLNNAGTMFTGRRHKRRFAVNDRIEVVVEKVDRYKRLIDFRP 831 >UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RRW9_9CLOT Length = 748 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 143/540 (26%), Positives = 226/540 (41%), Gaps = 54/540 (10%) Query: 24 GVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEKE----RESAEPEEL 78 G+ KGFGF+ V+ ++ FIP + +HGDR+ V+ S+ R ++ Sbjct: 75 GIFCGHPKGFGFVTVEGMEQDVFIPEDRTGAALHGDRVQIVVESQDRGGGRRAEGSVLKV 134 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 +E VG Q ++PD+ + I +G + G VA ++ Sbjct: 135 LEHANKEVVGYYQKSKGFGFVIPDNQKISKDI--FIPQGCDMGAVTGHKVVARIKEF--- 189 Query: 139 GDRSFYAE--LTQYITFGDDHFVPWWVTLARHNLEKEAP-------DGVATEMLDEGLVR 189 GD + E +T+ + +D + + L +E P +G E+ G+ R Sbjct: 190 GDANHKPEGVVTEILGHVNDPGTDILSIVRAYGLPEEFPPEVMDEVEGCPDEVAVPGMTR 249 Query: 190 E---------------------------DLTALDFVTIDSASTEDMDDALFAKALPDDKL 222 + DL L VTID +D+DDA+ Sbjct: 250 DEETWDGPYGIGDLTSPADWTGDLAGRLDLRGLRTVTIDGEDAKDLDDAVTLCRNGQGGY 309 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 L V IAD + ++ EG LDK A R + YL IPMLP +LS+ +CSL A R L Sbjct: 310 ILGVHIADVSHYVKEGRPLDKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGTDRLAL 369 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD--WQPESEAIAEQVRLL 340 +C M L G + D+ + I ++ Y V+ + + GD E E L+ Sbjct: 370 SCIMELDDQGNVLDH-KIAETVIHVDRRMTYTAVNAIVTD-GDEAVMAEYEGFVPMFMLM 427 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-IC 399 ++ E R + D P+ + IL +G+ L+I R A +I+E+ M+AAN Sbjct: 428 KEVSDILREKRKKRGAIDFDFPESKIILDAQGKPLEIKPYERNAATKIIEDFMLAANETV 487 Query: 400 AARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV-LTLDGFCKLRRELDA 458 A L F +Y H DP L + G + ++ + KL +++ Sbjct: 488 AEDYFWQSLPF-LYRTHDNPDPEKMKQLGTFIHNFGYFIRLQQGEIHPKELQKLLDKIEG 546 Query: 459 QPTGFLDSRIR-RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 P L SR+ R A+ +T HFGL Y +TSPIR+Y D+ HR++K +KG Sbjct: 547 TPEEVLLSRLTLRSMKQAKYTTLCSGHFGLAARYYTHFTSPIRRYPDLQIHRIIKESLKG 606 >UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHY2_RHOM4 Length = 751 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 136/519 (26%), Positives = 228/519 (43%), Gaps = 38/519 (7%) Query: 21 RAEGVVKATEKGFGFLEVDAQKS--YFIPPPQMKKVMHGDRII----AVIHSEKERESAE 74 R EG+++ +G+GF+E++ Q+ +I M + GDR++ A ++ RE E Sbjct: 91 RVEGILRVHPQGYGFVEIEGQEDEDIYISEAHMGTALDGDRVLVGLAAPARGDRRRE-GE 149 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI--PCRAARGLNHEFKEGDWAVAEM 132 +++E + VG + +VPD P L I P A G + GD V + Sbjct: 150 VLKVLERRRKQAVGTFYPRGAYAFVVPDDPRLTRDIYVPREAFNGA----RAGDKVVVSI 205 Query: 133 RRH--PLKGDRSFYAEL--------TQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 R P E+ Q + V A + PD + Sbjct: 206 DRFDDPKASPEGRVLEVLGPASDPRVQVLALALSKDVRTGFPEAALKEAERIPDTIPER- 264 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 E R DL TID + +D DDAL + LP+ +++ V IAD + ++ GS LD Sbjct: 265 --EYRRRLDLRDRAVFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYYVRPGSALD 322 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A R + YL IPMLP +LS+ +CSLR E + + M L+ + + Sbjct: 323 EEAYQRGTSVYLVDRVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARVV-RYQIRE 381 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 I S+ + Y++ ++ +AE VRL ++ Q+ + R + D P Sbjct: 382 TVIHSRQRFTYEEAQAIIDGA------DHPLAEPVRLAHELAQKLRKARMEAGAIDFDLP 435 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL--RDKLGFGIYNVHMGFD 420 + + L E G + I + R A++++EE M+ AN A + R + +Y +H D Sbjct: 436 EVKVELDEAGNPIRIYRKERLAAHQLIEEFMLLANRLVAETIGKRTEAPPFVYRIHDRPD 495 Query: 421 PANADALAALLKTHGLHVDAEE--VLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEI 477 LA ++ G H++ E ++ +L + + P ++ R + A Sbjct: 496 AEKIRQLAQYVRVFGYHLELTEDGTVSSKALNELLQHVKGTPEEPVIEEAALRAMAKARY 555 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516 ST+ H+GL + Y +TSPIR+Y D++ HRLLK +K Sbjct: 556 STQNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLKQYLK 594 >UniRef50_Q2JIR4 Exoribonuclease, VacB/RNB family n=2 Tax=Synechococcus RepID=Q2JIR4_SYNJB Length = 686 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 113/336 (33%), Positives = 159/336 (47%), Gaps = 50/336 (14%) Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 +R+DLT L TID AST D+DDAL + DD ++L + IADP+ W+ G LD A+ Sbjct: 282 LRQDLTHLHTYTIDDASTRDIDDALSVEFWSDDAVKLWIHIADPSCWVQWGDPLDLEARK 341 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + YLP IPM P ELS SL EVRP L+ + L +DG I D+ E + I+ Sbjct: 342 RGTSVYLPERVIPMFPPELSTGPMSLVQGEVRPALSFGILLGSDGQIRDS-EICLSQIKV 400 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 +L Y+ + LE + Q+ +A+ Q R WR + P+ Sbjct: 401 TYRLTYEDADEMLELGAE---------AQLTAIARAAQWRYGWRMAQGAIQIGLPE---- 447 Query: 368 LGEKGEVLDIVAEPRRI----ANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + +V+D + R I A ++V E M+ AAR GI V PA Sbjct: 448 --QDIKVIDEIPHLRVIEDTPARQMVAEMMVLTGEVAARFASQN---GI-PVPYRLQPAP 501 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS-RIRRFQSFAEISTEPG 482 + EV LD P G + S I R S AE++T+PG Sbjct: 502 -------------DLPPPEV------------LDRYPQGPVRSFAIMRCLSRAEVATQPG 536 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 H GLGL+AY TSPIR+Y D++ H +KA ++G+ Sbjct: 537 RHTGLGLDAYCQVTSPIRRYLDLVAHYQIKAFLRGD 572 >UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH3_9FIRM Length = 688 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 109/407 (26%), Positives = 186/407 (45%), Gaps = 20/407 (4%) Query: 224 LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA 283 L V IAD + ++ E S LD+ A +R + Y+ +PMLP +LS+ +CSL N R + Sbjct: 260 LYVHIADVSHYVKENSALDQEAYLRGNSIYVCDRVVPMLPFDLSNGICSLNPNVDRLTIT 319 Query: 284 CRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQI 343 C M + G + F + I S + Y +V+ L+ E + E + L + Sbjct: 320 CAMQVDEKGNLL-TYNIFPSVIHSDKRCTYKKVNACLDGDKAILQEYSEVKELLFTLESL 378 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 + + HN + + + + I+ + G +D+ R A +++EE MI AN+C A Sbjct: 379 AKLLKKQSHNRGCIDFNTKEAKIIMDKNGYPVDVNVLERGFAEQMIEECMILANVCVAHH 438 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKT----HGLHVDAEEVLTLDGFCKLRRELDAQ 459 + +Y VH DP + + + + D + F + ++ +A Sbjct: 439 MHVNKIPSMYRVHENPDPKKVATICTVANSLRIPFDFYPDEVNASQIQKFLESIQDENAY 498 Query: 460 PTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA-VIKGE 518 + S +R Q A HFGL LE Y +TSPIR+Y D++ HR+L A K + Sbjct: 499 EVLSMVS-LRSMQK-ARYDAHCLGHFGLALEEYCHFTSPIRRYSDLVVHRMLHAYCFKEQ 556 Query: 519 TATRPQDEITVQ-----MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 T DE ++ ++E+ R M ER V D+ A++++ + G F IV + Sbjct: 557 KRTPSNDEKKIEKQAFHISEKERDAIMMERMVNDYKKAQYMEKRVG--QVFEGTIVGVMS 614 Query: 574 GGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKV 620 G V + DN +P +H + ++ E+ T+ +KG+T KV Sbjct: 615 FGFFVEM-DNTVEGLVP---VHTLSNDFYDYDED-TMTLKGQTHGKV 656 >UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PAC9_CHIPD Length = 705 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 154/624 (24%), Positives = 266/624 (42%), Gaps = 52/624 (8%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIA-VIHSEKER 70 Q+ SQ G V+ T G F+ ++ Q K + + + GD ++ VI K Sbjct: 8 QKHSSQKKTFRGTVQITRSGMSFVIIEGQEKDVMVRQKNLNTALDGDEVLVDVIKQGKNE 67 Query: 71 ESAEP--EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD--AIPCRAARGLNHEFKEGD 126 E E+++ F G +Q ++P+ L IP + + + K GD Sbjct: 68 GRMEGVITEIIKRKKIEFTGSLQVNKGFAFLIPEKGLFMPDIYIPANSLK----DAKNGD 123 Query: 127 WAV------AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 AV E R P+ E+ + + + + + L PD V Sbjct: 124 KAVVRVVAWGEKTRKPV-------GEVVEVLDASNTNDLAMKEILIESGFPLSFPDEVLK 176 Query: 181 EM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 E+ +E R+D TID +D DDA+ + L + ++ V IAD + Sbjct: 177 ELNEIQENIDAEEVKKRKDFRKTLTFTIDPVDAKDFDDAISIRKLRGNWYEVGVHIADVS 236 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ + LDK A RA + YLP +PMLP ++S++LCSLR +E + + ++ G Sbjct: 237 HYVQPDTALDKEADKRATSVYLPDRVLPMLPEKISNELCSLRPHEDKLTFSAVFKMNDKG 296 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 I++N I S + Y+QV + +E TG+ ++V LL +I Q + R Sbjct: 297 EIKENW-IGRTVIHSDHRFTYEQVQEVIE-TGEG-----PYKDEVLLLNKISQTLRKVRF 349 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFG 411 + + + RF L E + + IV + + A++++EE M+ AN A V ++G Sbjct: 350 ENGAINFSSQEVRFQLDENAKPIGIVIKESKEAHQLIEELMLLANRTVAEYVYNIRIGTN 409 Query: 412 I-----YNVHMGFDPANADALAALLKT--HGLHVDAEEVLTLDGFCKLRRELDAQP-TGF 463 Y VH D +A + H L VD E L F ++ + +P Sbjct: 410 QHVPFPYRVHDTPDEEKLKMFSAFARKFGHKLEVDNLEKLAR-SFNEMLQLAHGKPEQHV 468 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 L++ R + A +T+ H+GLG E Y +TSPIR+Y D++ HR+L+ + + Sbjct: 469 LETLGIRTMAKAAYTTDDIGHYGLGFEHYCHFTSPIRRYPDVLVHRVLQQCLSHDIHPDK 528 Query: 524 QDEITVQ-MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 Q E + +E R AER + +++ G + F + ++ G V VD Sbjct: 529 QMEKKCKHSSEMERKAMEAERAANKYKQVEYMQQYIGEE--FDGVVSGVAHFGFWVETVD 586 Query: 583 NGAIAFIPAPFLHAVRDELVCSQE 606 + + + +DE V ++ Sbjct: 587 TKCEGLVSIHSM-STKDEFVYDEQ 609 >UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=Q04E22_OENOB Length = 726 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 145/587 (24%), Positives = 240/587 (40%), Gaps = 66/587 (11%) Query: 24 GVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPEELVEP 81 G A KGFGF++ D Q FI M D ++A +IH K+ PE +E Sbjct: 14 GTFVANPKGFGFVKTDEGQDDLFIGHSNTNLAMQSDEVLASIIHPGKD--GRVPEGKIEK 71 Query: 82 FLTRFVGKVQG-------KND---RLAIVPDHPL---------LKDAIPCRAARGLNHEF 122 L+ +V G +ND R + P+ + L++ +GL + Sbjct: 72 ILSHANQEVVGIFRSGVNENDLPNRSNLNPNDYIGTITFNDEKLQEYKYLVDKKGL--QP 129 Query: 123 KEGDWAVAEMRRHPLKGDRS--FYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 ++ D A + P DR +T I D V + + P+ A Sbjct: 130 QDRDSVTATTSQFPT-SDRPNLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSNYPEDAAQ 188 Query: 181 EMLD----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 + + E R D +TID A T+D+DDA+ LP+ L V IAD Sbjct: 189 QAKNIPQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGVHIAD 248 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 + ++ + LD A R + YL IPMLP E+S+ + SL NE R ++C M ++ Sbjct: 249 VSNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCEMEINQ 308 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 +G + + + + I S A++ YD ++ L+ + ++E + + + + Sbjct: 309 EGQVVKH-KIQPSIIRSHARMTYDSINKILDGDQAETAKYADLSEMIHQMGDLHKILAAM 367 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R + + + I+ KG D++ R I R++E M+AAN A Sbjct: 368 RKKRGAIEFETDEAEIIVDAKGHPTDVLVRDRGIGERMIESFMLAANETVAEHFDHLHVP 427 Query: 411 GIYNVHMGFDPANADALAALLK-----THGLHVDAEEV------LTLDGFCKLRRELDAQ 459 +Y VH + D + + H + D + + LD L E+ Sbjct: 428 FLYRVH---EVPEGDKVVNFFEFMRAIGHPIKADPKNLRPKDFQAALDAVAGLPEEM--- 481 Query: 460 PTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 + + + R A S +P HFG+ + Y +TSPIR+Y D++ HRL+K K T Sbjct: 482 ---MIQTMMLRATKQAHYSPQPIGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGT 538 Query: 520 ATRPQD-------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 D +I + +ER R AER D +A +++D G Sbjct: 539 GPSSTDAVRGKLPQIGIDTSERERRAVDAERATNDMKFAEYMEDHIG 585 >UniRef50_Q0GXV6 Putative ribonuclease n=1 Tax=Lactococcus phage Q54 RepID=Q0GXV6_9CAUD Length = 528 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 124/440 (28%), Positives = 213/440 (48%), Gaps = 33/440 (7%) Query: 173 EAPDGVATEMLDEGL-VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 E VA+E+L E R DLT IDS +T+D+DDA+ + LP+ +L+VAIAD Sbjct: 25 EEVKNVASEVLTEEWDGRVDLTDKLIFAIDSETTKDVDDAVSVEKLPNGNFKLLVAIADV 84 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ EGS LD+ A R + Y+ F PMLP LS+++CSL +VR LA M + Sbjct: 85 SHYVTEGSSLDREAYSRGTSVYVADFVSPMLPPALSNNICSLNDGKVRLALAAEMEIDLR 144 Query: 292 GTIEDNIEFFAATIESKAKLVYDQV-SDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 G ++ + F A ++ K ++ Y QV S + +N +Q + + ++ L +I + Sbjct: 145 GNVK-STNLFEAVVKVK-QITYTQVNSVYKDNLHFYQDKGYKMLWDMKELHEIL--LAKR 200 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R A+ F Y + G + R ++E M+ AN ++ +++ + Sbjct: 201 RKRGAIEFASSELY-VSTHDDGSAKGLSKRERGTGEMLIESFMLQANESVSKTVQELVNI 259 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFLDSRI 468 IY VH + + LAA+ + G+ ++ + + +T ++ P L + Sbjct: 260 SIYRVHDEPIDSKIERLAAISEQLGVTLNIKSDNITGKELQTFMNQVKGTPQETALSNFA 319 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP---QD 525 R A+ E HFG+ EAY+ +TSPIR+Y D+ HRL+K ++K T RP + Sbjct: 320 LRAMCQAKYGYENIGHFGIAAEAYSHFTSPIRRYPDLTLHRLIKDILK-VTNHRPGYWEK 378 Query: 526 EITV-----QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS-------- 572 I + AER+ ++ AER++ L A ++ K D ++ IV+I Sbjct: 379 RIPLIAEQSSKAERKAVD--AEREIEKKLIAEYVY-KNMLDKKYLGTIVNIKPNALIVEL 435 Query: 573 ----RGGMRVRLVDNGAIAF 588 +GG+ + ++N + F Sbjct: 436 ANGVKGGVNIATIENDFMGF 455 >UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z970_EUBR3 Length = 716 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 144/538 (26%), Positives = 242/538 (44%), Gaps = 47/538 (8%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIH- 65 L++ + S+ + GV A ++GFGF+ V+ + FIP + MH D + I Sbjct: 68 LSKRGKYSKSEIKKTVGVFTAHQRGFGFVTVEGEPDDIFIPAEYVNGAMHMDTVEITISP 127 Query: 66 -SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA--IPCRAARGLNHEF 122 + R+ + ++E + + V + ++ VPD+ IP ++G Sbjct: 128 VTTGRRKEGKVVSVIERGMKQVVCTYEASDNFGFAVPDNTRFGTDIFIPKERSKGA---- 183 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 G V E+ + KG + ++ + I DD + ++L + + + ++ Sbjct: 184 MSGHKVVVEITSYGKKGKKPE-GKVVEIIGHIDDPGTDILSIVKAYDLPVDFSEKIMHQV 242 Query: 183 LDEGLVREDLTALD-----------FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 + V +D+T D VTID +D+DDA+ + + D L V IAD Sbjct: 243 QN---VAKDVTPADMAGRMDLRDWMMVTIDGEDAKDLDDAV-SLYMDGDNYVLGVHIADV 298 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ E S LD A R + YL IPMLPRELS+ +CSL R L+C MT++ Sbjct: 299 SNYVQEHSALDVEALKRGTSVYLVDRVIPMLPRELSNGICSLNEGCDRLALSCIMTINKK 358 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWL--------ENTGDWQPESEAIAEQVRLLAQI 343 G + D+ + I++ ++ Y V L E + P E +AE +L + Sbjct: 359 GEVIDH-KIAETVIKTNRRMTYTNVKKILADKDAAVIEEYKELVPMFEKMAELAAILRKK 417 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAAR 402 +RG ++ F D P+ + +L E G +DI R +A +++E+ M+ AN A Sbjct: 418 RMKRG------SIDF-DFPETKVVLDEDGHPIDIKPYDRNVATKLIEDFMLIANETVAED 470 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQP 460 ++ F +Y H D L+ + G LH+ A+EV + KL ++D Sbjct: 471 YFWQEIPF-VYRTHDKPDSEKIAKLSTFINNFGYTLHIGADEVHPKE-LQKLLMKVDGTD 528 Query: 461 TGFLDSRIR-RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 L SR+ R A +T HFGL Y +TSPIR+Y D+ HR++K I+G Sbjct: 529 EESLISRLTLRSMKQARYTTACTGHFGLAANYYCHFTSPIRRYPDLQIHRIIKENIRG 586 >UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YQJ4_AZOPC Length = 586 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 127/507 (25%), Positives = 225/507 (44%), Gaps = 26/507 (5%) Query: 152 TFGDDHFVPWWVTLARHNLEKEAPDGVA-TEMLDEGLVREDLTALDFVTIDSASTEDMDD 210 + D++ +P ++ P+ + TE+ + RE LT TID + +D DD Sbjct: 89 SIQDEYNLPCKYPEEAEKAAQKIPNHITLTEISNREDFRETLT----FTIDPQNAKDFDD 144 Query: 211 ALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDL 270 AL K L ++ ++ V IAD T +I S +DK A R + YL IPMLP L +++ Sbjct: 145 ALSIKKLSNNFYEIGVHIADVTHYIKPDSSIDKEALKRGTSIYLVDKVIPMLPESLCNEV 204 Query: 271 CSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES 330 CSLR NE + + + I N I S + Y++ + +E + E Sbjct: 205 CSLRPNEDKLCFSVIFEMDGKAKIH-NYRIRRTIIRSDHRFTYEEAQEIIERSFATNYED 263 Query: 331 EAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVE 390 ++ V L + + E R ++ + + + +F L +G LDI + AN++VE Sbjct: 264 CSLNSSVFTLNCLAKILREKRFSNGSIDFVQREIQFDLDREGNPLDIYLKKNNEANQLVE 323 Query: 391 EAMIAANICAARVL-----RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL- 444 E M+ AN A ++ + +Y VH D L L+++ G ++ + + Sbjct: 324 EFMLLANKTIAEIVGKVPKNKRAKPFVYRVHGLPDIEKIKNLKQLVRSFGYKLNIKRINN 383 Query: 445 -TLDGFCKLRRELD-AQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKY 502 T L +++ + +++ R A +TE H+GL + Y +TSPIR+Y Sbjct: 384 ETSKNISSLFKQVQGTREQNLIETIALRTMEKAIYTTENVGHYGLAFKYYTHFTSPIRRY 443 Query: 503 GDMINHRLLKAVI--KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT 560 DMI HRLL+ + K + + + + +E+ + AER F+ K G Sbjct: 444 PDMIVHRLLEKYLNRKYSVSKKSLERLCKHCSEQESIAIQAERASIKAKQVEFMSTKVGN 503 Query: 561 DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET---V 617 F I +++ G+ V L NG IP +L D+ + T ++ G+T + Sbjct: 504 T--FDGVISNVTEWGLYVEL-GNGCEGLIPMRYL----DDDFYELDEKTYRLIGKTKKHI 556 Query: 618 YKVTDVIDVTIAEVRMETRSIIARPVA 644 Y + D + + + +E R + P++ Sbjct: 557 YCLGDPLQIRVIHSNLEKRQLDFAPIS 583 >UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QPD3_CHLP8 Length = 798 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 155/615 (25%), Positives = 256/615 (41%), Gaps = 77/615 (12%) Query: 23 EGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVI----------HSEKERE 71 +G + G+GF++V+ FI + + +HGD + ++ S +R Sbjct: 146 QGKLTTHPNGYGFVDVEGFDDDIFIGADMLGQSLHGDEVEVLVTKVPETYVSKQSPHQRC 205 Query: 72 SAEPEELVEPFLTRFVGKVQGKNDRLAIVPD--------HPLLKDAIPCR-AARGLNHEF 122 +V LT VG +Q +N R + PD H +KDA + A+ L + Sbjct: 206 EGLIVNVVSRKLTTIVGTLQRENRRFLLKPDQRKILPEIHISVKDAKKAKDGAKVLAGDL 265 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFG---DDHFVPWWVTLARHNLEKEAPDGVA 179 + + R + G I G D+ F +T A + V Sbjct: 266 EFLKNGTIQARVIEILGQAGESQVEVSAIARGLGIDETFEQELLTFA---------EKVR 316 Query: 180 TEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDK-LQLIVAIADPTAWIAE 237 E+ DE L R D+ D TID +D DDAL + L + ++ V IAD + ++ E Sbjct: 317 EEITDEDLKERLDIRDKDVFTIDPVDAKDFDDALSIEKLGNGGGYKVGVHIADVSHYVPE 376 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S LDK A+ RA + YL IPMLP LS+ +CSL R + ++ G ++ Sbjct: 377 NSALDKEARKRATSVYLVDRVIPMLPSRLSEKVCSLNPGVDRMAFSVFFNITKKGEVK-K 435 Query: 298 IEFFAATIESKAKLVYDQVSDWLE-NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 EF I SK + Y+ V ++ GD+ E +A+ + + R + + L Sbjct: 436 FEFHKTVIHSKRRFTYEDVQQIIDAGKGDYVEELQALESLSKTI------RAQRMESGGL 489 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG----- 411 F + + RF LG GE ++++ + R ++R++EE M+ AN A L + Sbjct: 490 EF-ETEEVRFKLGSNGEPVEVIKKERLDSHRLIEEFMLLANRTVAAYLTARYAENEKNPH 548 Query: 412 --IYNVHMGFDPANADALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTG----- 462 IY VH LA ++ G L +D + + + REL + G Sbjct: 549 PVIYRVHGAPQMERVQVLANFVRKIGFDLKLDRKGKDSATVSSRALRELLQKVHGTNVEF 608 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR 522 ++ + R S A + HFGLG E Y +TSPIR+Y D++ HR+L + ET + Sbjct: 609 LVNELVLRSMSKAVYMSSNDGHFGLGFEHYTHFTSPIRRYPDLVIHRIL---FEYETTRK 665 Query: 523 PQDEITVQ---------------MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 + ++T + ER ++ AER+ ++ G + Sbjct: 666 KRRKVTPERITEISATITEVCQITNEREKIATEAERESVKLKQVEYMSSHLGNT--YGGV 723 Query: 568 IVDISRGGMRVRLVD 582 I + G+ VR+ D Sbjct: 724 ITGATEYGIYVRMTD 738 >UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J794_MYCCR Length = 696 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 155/648 (23%), Positives = 283/648 (43%), Gaps = 71/648 (10%) Query: 24 GVVKATEKGFGFLE----VDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEE-- 77 G+ ++ + FGF+E ++ + F+P + GD + I+ ++S +PE+ Sbjct: 67 GIYRSKQATFGFVEDKDNPQSENNIFVPAKFSANSLEGDEVRVNIY----KDSLKPEQKY 122 Query: 78 -LVEPFLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR-GLNHEFKEGDWAVAE 131 ++ L R +GK+ L P + L + R + K GD+ + Sbjct: 123 GVITKILHRNLKFLIGKIVENGTFLDFEPIN--LNTKVLFRWQNPSMTSSLKSGDFVKVK 180 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLVRE- 190 + + R L Q I +HF+ N++ D + + +E +++E Sbjct: 181 IVDYQ---KRILKISLIQKIGHESEHFL---------NVKIPIIDSGVSTIFNEEVIQES 228 Query: 191 -----DLTALD----------FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 ++ ++D +TID T+D DDA+ + ++ + L V IAD + ++ Sbjct: 229 KQIPQEIKSIDPDRIDLRNEVVITIDGDDTKDFDDAISIETKENNYI-LKVHIADVSYYV 287 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 E S LD AK R + YLP IPMLP LS+ +CSL N R T++ + I+ Sbjct: 288 TEDSALDLEAKARGTSIYLPHIVIPMLPESLSNGICSLNPN------VDRYTITMEALID 341 Query: 296 DN-----IEFFAATIESKAKLVYDQVSDWLENTGDW-QPESEAIAEQVRLLAQICQRRGE 349 N ++ + + I S +L Y QV+++ +N + P+ E + + L QI ++ Sbjct: 342 KNGQNLSVKIYPSVIRSYKRLTYHQVNEFFDNKLSFGDPKLENLLKNALKLGQILRK--- 398 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 ++ N V + + + IL E+G I + R ++ I+E+ M+ AN ++ L D Sbjct: 399 YKENQGYVDLEIDESKIILDEQGYTERIEIKERGLSENIIEDFMVRANENVSKYLADHNF 458 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLDSRI 468 +Y VH D L ++K GL + + F ++ + Q F+ I Sbjct: 459 PNLYRVHNKPDSQRILQLNQIIKNLGLEIQIPYNVDSKSFADFVNQIKNKQNDNFIKIAI 518 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDE 526 R A S HFGL + Y+ +TSPIR+Y D+I HR+++ I K T + Sbjct: 519 LRTMQKAIYSDVNEGHFGLASKFYSHFTSPIRRYPDLILHRIIRHFIFNKNTDITHFNNI 578 Query: 527 ITVQMAERRRLNRMA---ERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 + ++ + L + A ER + A ++ G F A+I I + G V ++ Sbjct: 579 LAIEASSTTELEQKAFVLERKIVGIKKAEYINKHIGKS--FNAQINSILKFGFFVE-IEG 635 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 A + L +++ E+G + +K+ +++VTI EV Sbjct: 636 IFDALVGVKSLPDNDEDVYNVSEDGFSISNSKFEFKLGQIVNVTITEV 683 >UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=C3W9Q8_FUSMR Length = 710 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 110/392 (28%), Positives = 186/392 (47%), Gaps = 11/392 (2%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R+DL L +TID +D+DDA++ + L + +LIV+IAD + +I EGS LD+ A R Sbjct: 244 RKDLRHLPIITIDGDDAKDLDDAVYVEKLKNGNYKLIVSIADVSHYIPEGSVLDREAYKR 303 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL +PM P+E+S+ +CSL NE + C M + G + D+ + + + I++ Sbjct: 304 GNSVYLVDRVLPMFPKEISNGICSLNPNEDKLTFTCEMEIDKKGKVVDS-DTYKSVIKTA 362 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 ++ Y+ V+ + + I + V + ++ + E ++ + D P+ + +L Sbjct: 363 YRMTYNNVNKMIAGDEETLKTYAPIKDMVMDMLELSKIIREVKYKRGSIDFDIPEIKLVL 422 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 EKG+V I + R + RI+E+ MIAAN A L +Y H D L Sbjct: 423 DEKGKVEYIKSRDRGESERIIEDFMIAANETVAEKLFWLEIPSVYRTHEKPDMERIKNLN 482 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEISTEPGPHFGL 487 L + + E + F K+ + + L + I A+ + E HFGL Sbjct: 483 ETLAKFKYRIHSLEEIHPKQFQKIIEDSKERGINLLVHKMILMALKQAKYTVENYGHFGL 542 Query: 488 GLEAYATWTSPIRKYGDMINHRLLKAVIKG----ETATRPQDEITVQMAERRRLNRMA-- 541 Y +TSPIR+Y D+ HR+L +V+ G +T + +E+ V A + R A Sbjct: 543 ASGYYTHFTSPIRRYADLTVHRILNSVLHGYPNKKTIIKNMEELPVTCAHISKTERAAMK 602 Query: 542 -ERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 E + ++ DK G + + A IV S Sbjct: 603 VEDESVKIKLVEYMMDKVGEE--YDATIVGFS 632 >UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NB86_9BACT Length = 645 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 164/606 (27%), Positives = 273/606 (45%), Gaps = 63/606 (10%) Query: 23 EGVVKATEKGFGFLEVDAQKS------YFIPPPQMKKVMHGDRIIAVIHSEKER---ESA 73 EG + T GFGF+ + A ++ FIPP + + M GD + I +E +S Sbjct: 14 EGKLTVTPTGFGFVALPADEAGRHPDDIFIPPQFVGEAMDGDEVKVAILPPREDVPGDSR 73 Query: 74 EPEELVEPFLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 P + L R FVG++Q I P + + D I +R K GDW Sbjct: 74 GPAGKIVAVLKRAREEFVGELQEGG---RIKPLNRRMPDDIEITGSR---RGAKPGDWVK 127 Query: 130 AEMRRHPLKGDR--SFYAELTQYITFGDDHFVPWWVTLARHNL---EKEAPDGVATEMLD 184 + L G S+ +T + + +A +L EA + A +++ Sbjct: 128 VK-----LLGSEGGSWQGAITDAMGKAGEIAADLDAVMAEFDLCPRYSEADNEEALKIVP 182 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDK-LQLIVA--IADPTAWIAEGSKL 241 + RED T VT+D +D DDAL +P +K ++IV I+D A+IA SK Sbjct: 183 REIEREDCTKQLTVTLDPIDAKDFDDAL--SIMPGEKRTEVIVGVHISDVAAFIAPKSKF 240 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS-ADGTIEDNIEF 300 DK A+ R+F+ YLPG +PMLP L+ + SL+A +V +T+ + G I + F Sbjct: 241 DKEAEKRSFSCYLPGRTLPMLPAALTARI-SLQAGQVSNAHTVFLTVERSSGKI---LSF 296 Query: 301 FAATIESKA--KLVYDQVSDWLEN---TGDWQPESEAIAEQVRLLAQICQRRGEWR-HNH 354 A + K +L Y++V +++++ DW S+ + +++ L +I ++ +R Sbjct: 297 RRAHTKIKVDHRLNYEEVQEFIDHGTAPADW---SKNLQSKLKQLVEITRKMQAYRKKTE 353 Query: 355 ALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 + P+ R + EK ++ +V++ R + +VEE M+AAN L + G+Y Sbjct: 354 DFIDLALPEVRILCDEKTNRIVGLVSKVPRESENVVEECMLAANSAVGTQLGEISVAGLY 413 Query: 414 NVHMGFDPANADALAALLK-----THGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRI 468 VH + + A ++ T G D + F K + +P + S++ Sbjct: 414 RVHPEPEAEKIEEFTANMQEMFGITPG---DLSSRKACNAFLKSLPDDPKRP--IILSQL 468 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG--ETATRPQDE 526 R A +P HFGLG Y +TSPIR+Y D+I H+ L G +T + Sbjct: 469 LRSLPRAYYLEKPALHFGLGKGRYCHFTSPIRRYPDLIVHQQLWNYDTGARTRSTATLAK 528 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDK--AGTDTRFAAEIVDISRGGMRVRLVDNG 584 + + + + N A D L RFL++K AG D F I ++ G+++ + + G Sbjct: 529 VALDCSTKEENNDNAYFAANDRLKLRFLQEKLEAGGDLTFDGVIAKVTPAGLQLDVSELG 588 Query: 585 AIAFIP 590 FIP Sbjct: 589 IYGFIP 594 >UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma penetrans RepID=Q8EW72_MYCPE Length = 727 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 113/419 (26%), Positives = 189/419 (45%), Gaps = 44/419 (10%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R+DL+ ++FVTID A+++DMDDA+ D +L VAIAD + ++ S L ++A R Sbjct: 261 RKDLSHINFVTIDPATSKDMDDAVCVVKNKDGTYKLYVAIADVSYYVKLHSNLWRSALKR 320 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL IPMLP +LS+++CSL E R C M + +G NI+ + A I SK Sbjct: 321 GTSIYLVNQVIPMLPHKLSNNICSLNPFEKRYAQVCEMDIDKNGEFT-NIQVYPAIIFSK 379 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 K YD V+D+++ + + I E + ++ + R + D + + IL Sbjct: 380 YKFAYDNVNDYIKLKKKIEEVPDEIYEMLNTSFELDDYLNKKREKDGYINFDIKEAKIIL 439 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAA---RVLRDKLGFGIYNVHMGFDPANAD 425 E ++ D+V A +++E M+AAN L L F +Y VH Sbjct: 440 DENEKIKDVVIRETGPAQKMIENFMVAANEAVTLKFHQLCPNLPF-VYRVH--------- 489 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT---------------GFLDSRIRR 470 A + + ++A+++ GF R +P ++ + R Sbjct: 490 AKPEEKRINDFKIEADKI----GFIYDRNLTSWKPNTVSKWLEKNKNNPNKDLINMILLR 545 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ------ 524 + A+ T HFGL + Y +TSPIR+ D+I H LL+ + Q Sbjct: 546 TMAKAKYQTANLGHFGLSISNYTHFTSPIRRLADVIVHYLLRMFVYEPENYSEQEKDYIL 605 Query: 525 ---DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 D+ ++ L ERDV +A ++K+K G + + + I+ G+ V+L Sbjct: 606 CNLDDFCLKANSCEVLAVETERDVNAMKFAEYMKEKIGCE--YNGFVSYITNFGVFVQL 662 >UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY8_LEPBJ Length = 755 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 145/590 (24%), Positives = 273/590 (46%), Gaps = 59/590 (10%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERE 71 K L + + G + ++KG GF+++ + F+P ++ + GD + ++ ++ Sbjct: 114 KNILVNSNQKLLGTISTSKKGDGFVKLPSGMEVFVPGQYVQSAIQGDLVEVQPNAIGKKG 173 Query: 72 SAEPEELVEPFLTRFVGKVQGKN-DRLAIVPDHPLL------------KDAIPCRAA--R 116 E E V L R G++ R+ ++ P K+ R Sbjct: 174 RLEGE--VTKILRR------GRDLYRMIVIEKDPKFIFGKLLDIDGEEKEGYLLRKTILM 225 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDD--HFVPWWVTLARHNLEKEA 174 L E + GD + ++R + +R+ Y Q++ F D + L ++N Sbjct: 226 NLQDEIQLGDVLIVKLREET-EHERNLYE--VQFLRFESDTKEDLDLMRMLMKYNYSILY 282 Query: 175 PDGVAT---EMLDEGLV-----REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 P+ + E +DE V R DL L +TID ++D DDA+ + +++ V Sbjct: 283 PENIVLNLPEEVDESTVDDWGSRVDLRNLKCITIDGEYSKDFDDAI-SFVEEKSRIRFYV 341 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 +AD + ++ G+ LD+ A RA + YL +PMLP +LS++LCSL A + R M Sbjct: 342 HVADVSYYVRLGTDLDEEAYNRATSVYLGSRVVPMLPPDLSENLCSLVAGKNRLAFTVEM 401 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQV-SDWLE-NTGDWQPESEAIAEQVRLLAQIC 344 G I +++++ + I + Y++ S+ L + G+W A+ +R Sbjct: 402 EADWKGKI-THVKYYKSVINVAERYTYNRAESEILSGDPGNWIFRMNEFAKALR-----A 455 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 +R + R + L + + + + V++I + R A+ ++EE M++ANI A + Sbjct: 456 RRIEDGRVDLNL-----KENKVVTDSEHNVVEISVQDRLQAHILIEEFMLSANIKIAESI 510 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL 464 R K +Y +H + ++L A L+ +G+ + ++ + + + +EL+ +P L Sbjct: 511 RKKKHPTLYRIHEPMNEEKLESLNAFLQLNGIKILLKDS-SYEAIRAVLKELEGKPAERL 569 Query: 465 DSR--IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR 522 + +R F A S E H+GLG E Y +TSPIR+Y D++ HR+L+ ++ G+ Sbjct: 570 FNMFLLRTFMQ-AYYSGEYLGHWGLGFEDYCHFTSPIRRYPDLVCHRVLQQILLGKKPLY 628 Query: 523 -PQDEITVQM--AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIV 569 P++ +T+ + + + R AERD R+L +K G F+A I Sbjct: 629 GPEEVVTLGLHCSHQERKASDAERDYYKLKACRYL-EKTGI-KEFSATIT 676 >UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WY09_9DELT Length = 803 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 151/492 (30%), Positives = 213/492 (43%), Gaps = 68/492 (13%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 RED+ AL VTID A D DDA+ +A P L VAIAD + ++ S LD A R Sbjct: 263 REDVRALPLVTIDGADARDFDDAVQVEARPGGGWLLRVAIADVSHYVRPRSALDTEALAR 322 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + Y P PMLP L D LCSLR +E R + + SA G F A + S Sbjct: 323 GNSWYFPTSVEPMLPPALCDGLCSLRPDEDRLAMLAEIPFSATGQ-PGKPRFAAVVMRSA 381 Query: 309 AKLVYDQVSDWLENTGDWQPES---------------EAIAEQVRLLAQICQRRGEWRHN 353 A+L YDQV L + D Q + E E R L + QRRG Sbjct: 382 ARLTYDQVKACLLDR-DEQARAALAAGPRGQEVLDMLETAFELYRCLREARQRRG----- 435 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG-- 411 +L F D P+ + +KG +L + R A+R++EE MIAAN AR L G Sbjct: 436 -SLDF-DLPEPEYSFDDKGRLLRVSRRVRHDAHRLIEEFMIAANEAVARHLGGLKADGSP 493 Query: 412 --------IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR---RELDAQP 460 +Y VH DP ++L L+ +D E V L+ R++ Sbjct: 494 EGAPKEPFLYRVHPQPDPERLESLFDSLEA----IDPELVPVKPAASALQGILRDVQGSD 549 Query: 461 TGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 FL R+ R A E HFGL AY +TSPIR+Y D++ HR LKA + Sbjct: 550 REFLVGRLCLRAMPQARYQPENEGHFGLASRAYCHFTSPIRRYADLLVHRALKASLGLYD 609 Query: 520 ATRPQDEITVQMAERRRLNRM------AERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 P + +++A+ +LNR ER++ L L+ + G RF + ++ Sbjct: 610 GALPAGQKLLRVAD--QLNRRERDALDCEREMARRLACMALEGRVG--ERFRGVVAGVND 665 Query: 574 GGMRVRLVDNGAIAFIPAPFL------HAVRDELVCSQENGTVQIKGETVYKVTDVIDVT 627 G+ V L + I L VR + + Q +G G++ ++V Sbjct: 666 FGLFVELNEMPVEGMIRVEDLGDDWYDFDVRRQCLVGQRSGLCWSMGQS-------LEVV 718 Query: 628 IAEV---RMETR 636 +AEV R+E R Sbjct: 719 LAEVHSGRLEIR 730 >UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY08_STRM9 Length = 619 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/399 (27%), Positives = 189/399 (47%), Gaps = 16/399 (4%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL +TID S +D+DDA++ + ++ L V+IAD + ++ E SKLD A R Sbjct: 174 RVDLRHQKTITIDDISAKDLDDAIYLEK-EENHYILYVSIADVSYFVKEYSKLDFEAAKR 232 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL IPMLP++LS++LCSL +E + ++ +G + ++ +FF + I+S Sbjct: 233 GNSIYLAEQVIPMLPKKLSNNLCSLNPDEDKLTFTVKLKYDLNGKLIES-DFFKSIIKSH 291 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 +L Y V+ +N P + E +LL + ++G N P+ + IL Sbjct: 292 HRLNYTDVNKMFDNNDKSYPILWDMLELSKLLRKQKNKKGMINFN-------IPEIKLIL 344 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 E G++ +I ++ ++E M+AAN A L + IY VH + +L Sbjct: 345 DENGDIKEISKRISGLSQELIENFMVAANEAVAEYLHWQNIPAIYRVHEAPEIDTLRSLN 404 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEISTEPGPHFGL 487 L G +++ + K+ + +L + + + A+ E HFGL Sbjct: 405 KKLNILGYNINNVMDIHPGKIAKIIDKSSNDENSYLIHKTVLQAMKRAKYMNENKGHFGL 464 Query: 488 GLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT-----RPQDEITVQMAERRRLNRMAE 542 L+ Y +TSPIR+Y D+I HR+L+ + + + + ++E + + R+AE Sbjct: 465 ALDNYLHFTSPIRRYSDLIVHRMLQFTLNNKKISTKYIDKKKEEYKLIAEHISKTERVAE 524 Query: 543 RDVGDWLYARFLKD-KAGTDTRFAAEIVDISRGGMRVRL 580 R D + + L K + F A I I RG + ++L Sbjct: 525 RLEKDSIKLKLLDYMKKHLNEVFEARISGIIRGKIFLQL 563 >UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F4 Length = 1349 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 118/403 (29%), Positives = 180/403 (44%), Gaps = 46/403 (11%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL TID ++ D+DDAL K + DD ++ V IAD + ++ E S LDK A++R Sbjct: 834 RSDLRKECIFTIDPSTARDLDDALSCKKIADDLYEVGVHIADVSYFVKENSALDKVAQLR 893 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 A + YL IPMLP LS+DLCSL R + + +DGTI N +F I S+ Sbjct: 894 ATSVYLTQKVIPMLPSILSEDLCSLNPGVDRLAYSVIFNIKSDGTII-NEKFVRTVICSQ 952 Query: 309 AKLVYDQVSDWLEN-------TGDWQP-----ESEAIAEQVRLLAQICQRRGEWRHNHAL 356 KL Y Q +EN T D+ E I + + L QI + + RHN Sbjct: 953 VKLTYCQAQQLIENQLTDYLITNDFPKIYGGFTLENIKDSLYTLFQISKNLRKQRHNAGA 1012 Query: 357 VFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + + P+ F L EK + + + + +N+++EE M+ AN+ AR IY Sbjct: 1013 ISYNLPEIIFNLNEEKDKPIGLSLYKYKDSNKLIEEFMLLANMSVAR--------KIYEA 1064 Query: 416 HMG------FDPAN---ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 466 H P N + LA L + + L D +++ + L+ + FL+ Sbjct: 1065 HPKKAVLRRHPPPNQIMMEDLAKLFQLYELDFDLGSNQSINKSLEKLSGLENELKTFLEP 1124 Query: 467 RI-----------RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 I F S A + + H+GL + Y +TSPIR+Y D++ HR L A + Sbjct: 1125 AIVLMLTKPFLLASYFCSGAVTNEQDFHHYGLNVPLYTHFTSPIRRYPDILVHRCLTAAL 1184 Query: 516 KGETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYARFL 554 + A E IT Q ++ A + + + FL Sbjct: 1185 DSKFAVNKSVEDIKRITDQCNIKKYNADKASEESSELFFCLFL 1227 >UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepID=RNR2_LACLA Length = 665 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 161/669 (24%), Positives = 288/669 (43%), Gaps = 63/669 (9%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLE----VDAQKSYFIPPPQMKKVMH 56 M Q + L + L Q ++GV KGFGF+ D +I K M Sbjct: 1 MVQLSELASALNQ------TESKGVFSKHPKGFGFVHPEDATDKTNDIYIGKNDTKFAMD 54 Query: 57 GDRIIAVI---HSEKERESAEPEELVEPFLTRFVG----------KVQGKNDRLAIVPDH 103 GD++ + +EK S + ++ E + VG K G R+ + D Sbjct: 55 GDKVTVKVTYPKTEKRGASGQITKINERAVVDTVGTYRSLSNRQVKALGYKGRIELYNDR 114 Query: 104 PLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWV 163 + D + + +E D ++ ++P ++F ++T I + + Sbjct: 115 --ISDTLYIKQPLS---GVQEEDVVSLKITQYPT-NTKTFEGKITGIIGHKGEVGLDILE 168 Query: 164 TLARHNLEKE-APDGVA-TEMLDEGLV------REDLTALDFVTIDSASTEDMDDALFAK 215 L + +E + + +A E E L RED TID ++D+DDA+ K Sbjct: 169 VLCAMKIPQEFSSETLAEAEAFSEKLTDSDLQDREDYRNEITYTIDGDDSKDLDDAIHVK 228 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 L + +L V IAD + ++ EGS LD+ A RA + Y+ +PMLP +LS++LCSL Sbjct: 229 KLSNWHFELGVHIADVSHYVTEGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNE 288 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE---- 331 + R ++C M + G I + + + I++ ++ Y+ V+ + + E+ Sbjct: 289 AQERLTMSCLMEIDDKGKIV-SYKISPSVIKTTYRMTYNNVNKMIHQGQEGHREALENFF 347 Query: 332 AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEE 391 I + +++ ++ + R + ++ D + + IL EKG ++IV R A R++E Sbjct: 348 KITDSIKVAVELHEILETMRKDRGMIEFDESEAKIILDEKGHPIEIVKRDRDTAERMIES 407 Query: 392 AMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLK---THGLHVDAEEVLTLDG 448 M+ AN A + K +Y VH D + A L++ G ++++ ++ Sbjct: 408 FMLMANETVALDFQKKKLPSLYRVH---DNPKEKSFAKLMEAAANAGFSLNSDSHQAINF 464 Query: 449 FCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH 508 F + ++ L ++R S A S + HFGL Y +TSPIR+Y D+I H Sbjct: 465 FADEIKGTSSEKA--LTYQLRHTMSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIH 522 Query: 509 RLLKAVIKGETATRPQD-------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTD 561 RLL + + + +D EI ++ + ER + A ++ ++ G Sbjct: 523 RLLH-LYPSDHSNHTKDEWKERLPEIASHSSDMEHRAVVTERIIDAMKKAEYMSERIG-- 579 Query: 562 TRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH-AVRDELVCSQENGTVQ-IKGETVYK 619 + I + + G+ V L DN I P LH +EL +E + K ETVY+ Sbjct: 580 EVYTGTITGLQKFGIFVAL-DNTVEGLIRVPNLHTGTTEELEFDEEASIFKGKKSETVYQ 638 Query: 620 VTDVIDVTI 628 + I + + Sbjct: 639 IGQEIKIRV 647 >UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX9_9FIRM Length = 766 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/409 (28%), Positives = 183/409 (44%), Gaps = 27/409 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L VTID +D+DDA+ L V IAD + ++ EGS LD+ A R Sbjct: 294 RLDLRGLQTVTIDGEDAKDLDDAVTICRDNQGHYILGVHIADVSHYVKEGSPLDREAFKR 353 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + + YL IPMLP +LS+ +CSL A R L+C M + GT+ D+ I Sbjct: 354 STSVYLVDRVIPMLPHKLSNGICSLNAGTDRLALSCIMEVDGQGTVLDH-RIAETVIHVD 412 Query: 309 AKLVYDQVSDWLENTG--------DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 ++ Y V+ + + D+ P + + E +L + ++RG A+ F D Sbjct: 413 RRMTYTAVNAIVTDRDEAVMAEYEDFVPMFDCMKELADILRESRRKRG------AIDF-D 465 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ + +L +G+ L+I R A RI+E+ M+ AN A + +Y H D Sbjct: 466 FPESKIVLDGQGKPLEIKPYERNAATRIIEDFMLLANETVAEDYYWQSIPFLYRSHDNPD 525 Query: 421 PANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAEIS 478 P L + G + + + KL +++ P L SR+ R A+ + Sbjct: 526 PEKMKQLGTFINNFGYFIKMQHGEIHPKELQKLLDKIEGTPEEALLSRLTLRSMKQAKYT 585 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-------EITVQM 531 T+ HFGL Y +TSPIR+Y D+ HR++K +KG + + E+ VQ Sbjct: 586 TQCSGHFGLATRYYTHFTSPIRRYPDLQIHRIIKETLKGGLSDKRAGHYEKILPEVAVQT 645 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + R AER+ ++ G D F I ++ G+ V L Sbjct: 646 SALERRADEAERETDKLKKCEYMSRFIGQD--FDGAISGVTNWGLYVEL 692 >UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota RepID=Q16PB6_AEDAE Length = 970 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 124/379 (32%), Positives = 178/379 (46%), Gaps = 43/379 (11%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL + ++D D+DDAL A+ L + +++ V IAD T +I G+ LDK A +R Sbjct: 457 RVDLRDITICSVDPPGCTDIDDALHARRLDNGNIEVGVHIADVTHFIKPGTPLDKEAGLR 516 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 A T YL I M+P LS +LCSLR E R +C L DG N +F + I+SK Sbjct: 517 ATTVYLVDKRIDMVPDVLSSNLCSLRGGEERLAFSCIWELD-DGANIINTKFHKSVIKSK 575 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRL---LAQICQRRGEWRHNHALVFKDRPDYR 365 A L Y + +++ ++ A+ +RL LA+I +RR N ALV P+ R Sbjct: 576 AALTYQEAQLIIDDP----TQTNQTAQSLRLLNKLAKILKRR--RIDNGALVLAS-PEIR 628 Query: 366 F-ILGEKGEVLDIVAEPRRIANRIVEEAMIAANI-CAARVLRDKLGFGIYNVHMGFDPAN 423 F I E + +D+VA+ N +VEE M+ AN+ AA++ + + H AN Sbjct: 629 FNIDSETHDPIDVVAKKLLDTNSMVEEFMLLANVSVAAKIQSEFPECAMLRRHPCPPDAN 688 Query: 424 ADALAALLKTHGLHVDA----EEVLTLD--------GFCKLRRELDA----QPTGFLDSR 467 D L G +D +LD F L R L Q F+ Sbjct: 689 FDPLKKAASYQGFQIDTSCGKNLATSLDLAVKPDNPYFNTLLRILATRCMMQAVYFISGT 748 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP---Q 524 I++ + F H+GL Y +TSPIR+Y D+I HRLL A I G AT P Sbjct: 749 IQQQEYF---------HYGLASPIYTHFTSPIRRYADVIVHRLLAACI-GADATYPALLD 798 Query: 525 DEITVQMAERRRL-NRMAE 542 + + Q+ NRMA+ Sbjct: 799 KQASSQLCNNLNYRNRMAQ 817 >UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q297C3_DROPS Length = 978 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 108/379 (28%), Positives = 172/379 (45%), Gaps = 38/379 (10%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL LD ++D D+DDAL + LP+ ++ V IAD + +I G+ LDK A R Sbjct: 476 RVDLRELDICSVDPPGCTDIDDALHCRELPNGNFEVGVHIADVSHFIRPGNALDKEAAAR 535 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL G I M+P LS +LCSL R +C + + + D F + I+SK Sbjct: 536 GTTVYLVGKRIDMVPELLSSNLCSLVGGVERFAFSCVWEVDKEANVIDK-RFHKSVIKSK 594 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF-I 367 + Y++ ++ D +SE IA+ +R L ++ + + R ++ + P+ RF + Sbjct: 595 RAMTYEEAQVLID---DATQQSE-IAKSLRHLNRLAKILKKRRMDNGALVLASPEIRFQV 650 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADA 426 E E L++ A+ R N +VEE M+ ANI A + + + H P N D Sbjct: 651 DSETHEPLEVEAKQMRETNSMVEEFMLLANITVAEHIAAEFTECAVLRRHPKPPPTNFDP 710 Query: 427 LAALLKTHGLHVDAEEVLTLDG------------FCKLRRELDA----QPTGFLDSRIRR 470 L + G VD E L L F + R L Q F+ +++ Sbjct: 711 LVKAARYQGFQVDTETGLVLSHSLDKCVKEDNPYFNTMIRILTTRCMMQAVYFISGSLQK 770 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT------RPQ 524 + F H+GL Y +TSPIR+Y D++ HRLL A I ++ + Sbjct: 771 EEFF---------HYGLAAPIYTHFTSPIRRYSDIMVHRLLAASIGADSTYAQLLERKSN 821 Query: 525 DEITVQMAERRRLNRMAER 543 +E+ + R ++ + A R Sbjct: 822 EELCHNLNYRHKMAQYAAR 840 >UniRef50_C3XDX4 Ribonuclease R n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XDX4_9HELI Length = 575 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 174/377 (46%), Gaps = 42/377 (11%) Query: 175 PDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI-VAIADPTA 233 P + LD R DLT L F TID + +D DDA++ D K ++ VAIAD ++ Sbjct: 98 PKNHIKKQLDNT-CRYDLTHLPFCTIDPVNAKDHDDAIYY----DSKHSILYVAIADVSS 152 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 +++ S LDK A+ RAF+ Y P PMLP +LS CSL+ +E R L + L Sbjct: 153 YVSLDSTLDKEARDRAFSLYFPNKVFPMLPPQLSSHACSLKQDEKRLALVWALKLHKRNV 212 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLE---------NTGDWQPESEAIAEQVRLLAQIC 344 + + F A I S A L Y QVS +LE NT ++AI E + +++ Sbjct: 213 KVLHSQIFKAVICSHASLNYKQVSHFLESRLDSKSCKNTESKPINNQAIEESLLAFSKLA 272 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + R + + R D+ + + ++ I + + I++ IVEEAM+ AN +A L Sbjct: 273 VLLYKKRMQNGIDLALR-DFSLQVDDDEKLDSITIDSKDISHTIVEEAMLLANQASAMYL 331 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR--RELDAQPTG 462 + GIY H +P D L +++ + +++ + K + + + + Sbjct: 332 HS-IKHGIYRNHA--EPNKRDFYKLLNILADMNIGNKSIMSKNKTSKNKTLNKANKKQNN 388 Query: 463 FLDSR--------------------IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKY 502 L + +R F +S G HFGLG Y +TSPIR+Y Sbjct: 389 MLTTLQSLQKEAIKKHKRHIADFCIVRHFAKANYMSNSIG-HFGLGFPFYTHFTSPIRRY 447 Query: 503 GDMINHRLLKAVIKGET 519 D++ HRL+ A ++ T Sbjct: 448 SDLLVHRLITAHLQNNT 464 >UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 Length = 715 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 140/580 (24%), Positives = 254/580 (43%), Gaps = 38/580 (6%) Query: 34 GFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE--ELVEPFLTRFVGKVQ 91 F+ D ++ FI M+ D++ + ++++ + E E E++E FVG ++ Sbjct: 97 SFIPDDGGETIFIAERNSAHAMNNDKVKIALFAKRKNRNPEGEVIEILERANDTFVGTLK 156 Query: 92 GKNDRLAIVPDHPLLKDAI--PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQ 149 + ++ ++ L + I P +G K GD AV ++ P + ++ ++ Sbjct: 157 VEKFYAFLLTENRTLANDIFIPKDKLKG----GKNGDKAVVKIVEWPEEA-KNPIGQVID 211 Query: 150 YITFGDDHFVPWWVTLARHNLEKEAPDGVAT-------EMLDEGLV-REDLTALDFVTID 201 + ++ LA L P V T E+ + RED + TID Sbjct: 212 ILGKAGENTTEMHAILAEFGLPYVYPKNVETAAEKIPAEISEADYAEREDFRNVTTFTID 271 Query: 202 SASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPM 261 +D DDAL + + ++ V IAD T ++ EG +DK A+ RA + YL IPM Sbjct: 272 PKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGGVIDKEAEKRATSVYLVDRTIPM 331 Query: 262 LPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE 321 LP L + +CSLR +E + + ++ G ++D+ I+S + Y++ +E Sbjct: 332 LPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDS-RIVHTIIKSDRRFTYEEAQKVIE 390 Query: 322 NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEP 381 TG+ + E + ++ LAQI +++ R + DR + +F + E G+ L + + Sbjct: 391 -TGEGDYKEEIL--ELNKLAQILRKQ---RLAAGAIDFDRVEVKFEIDETGKPLSVYFKE 444 Query: 382 RRIANRIVEEAMIAANICAARVL-----RDKLGFGIYNVHMGFDPANADALAALLKTHGL 436 + AN+++EE M+ AN A + K Y +H DP + L + G Sbjct: 445 SKEANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFPYRIHDLPDPDKLENLNWFINRFGY 504 Query: 437 HVDAEEVLTLDGFCKLRRELD----AQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAY 492 + T + + R LD + +++ R A ST H+GL + Y Sbjct: 505 KIRTSGSKT-EISKSINRLLDDIKNKKEQNLVETVSLRAMQKARYSTHNIGHYGLAFDYY 563 Query: 493 ATWTSPIRKYGDMINHRLLKAVIKGETATR--PQDEITVQMAERRRLNRMAERDVGDWLY 550 +TSPIR++ DM+ HRLL + G + +E+ +E ++ AER + Sbjct: 564 THFTSPIRRFPDMMVHRLLTRYLAGGRTVQEAKYEELCDHSSEMEQIAANAERASVKYKQ 623 Query: 551 ARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 F+ ++ G + F I ++ G+ V L +N IP Sbjct: 624 VEFMGERLGME--FDGVISGVTEWGLYVELNENKCEGMIP 661 >UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6K5_9BACT Length = 730 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 148/526 (28%), Positives = 237/526 (45%), Gaps = 48/526 (9%) Query: 24 GVVKATEKGFGFLEVDAQKS----YFIPPPQMKKVMHGDRIIA------VIHSEKERESA 73 G + +GFGF+ V A+K F+ M MHGD ++ I +++ Sbjct: 70 GTMDCNSRGFGFV-VPAKKGEGKDIFVNEENMNSAMHGDIVVVRLPDLEQIPKRGKKKGG 128 Query: 74 EPEELVE------PFLTRFVGKVQGKNDRLAIVPDHP-LLKDAIPCRAARGLNHEFKEGD 126 ++V PF+ VG + L +VPD+ L +D G + GD Sbjct: 129 GSGQIVNVLKRANPFI---VGTFKKSKRLLYVVPDNARLFRDVY---VTEGDAKDATPGD 182 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDD-----HFVPWWVTL--ARHNLEKEAPDGVA 179 V ++ + P + + E+T+ + D H + + L A H + ++ Sbjct: 183 KVVVKIVQWPSR-HLNPEGEITEILGKEGDPKVDLHSIIYQFKLPQAFHKKVSNEAEKIS 241 Query: 180 TEMLDEGL-VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 E+ E + R DL +TID +D DDAL + QL V IAD + ++ + Sbjct: 242 QEIPQEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEKDERGNWQLGVHIADVSYYVKQD 301 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S +DK A++R + YLPG IPMLP LS++LCSLR E R + +T+ +G I + Sbjct: 302 SAIDKEARLRGTSVYLPGKVIPMLPEALSNNLCSLREGEDRLTKSVLVTIDPEGNILKST 361 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 + I +L Y Q + + N E + + + LAQ+ Q + + N + Sbjct: 362 -VKHSVINVTKRLTYKQATAIINNESAGNI-PEMVKDVLVELAQLAQILFKNKMNRGAIE 419 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYNVHM 417 D P+ L E+G + + E R +++R+VEE M+ AN + A + ++KL I VH Sbjct: 420 LDLPEVSLKLDEEGNIEKVEKEERDVSHRLVEECMLLANEMVATFMHKNKLPL-ISRVHP 478 Query: 418 GFDPANADALAALLKTHGLH---VDAEEVLTLDGFCKLRRELDAQPTGFLDSRI--RRFQ 472 +P D L GL VD ++ L F E+ +P + + + + + Sbjct: 479 --EPDEEDMLEFADFVRGLENTRVDPFKIHQLQAFLA---EIRGKPEAHMVNLVLLKSMK 533 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 +TE G HF L LE YA +TSPIR+Y D+I HR L GE Sbjct: 534 QAVYSATESG-HFALALENYAHFTSPIRRYPDLIIHRTLDQHFSGE 578 >UniRef50_A9EZ35 Ribonuclease R n=2 Tax=Myxococcales RepID=A9EZ35_SORC5 Length = 648 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 127/413 (30%), Positives = 188/413 (45%), Gaps = 21/413 (5%) Query: 189 REDLTALDFVTIDSASTEDMDDAL-FAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL + VTID+ T D+DDA+ A PD L+++V+IAD A++ EGS LD A+ Sbjct: 188 RRDLRDVITVTIDAPVTTDIDDAVSVLPAGPDGALRVLVSIADVDAFVPEGSPLDLEARA 247 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + YL G IPMLP +S + SL R + + + +G I +I+ + I S Sbjct: 248 RGTSVYLAGRVIPMLPDAISSEAASLLPGVDRLAVTVELRIDPEGGI-TSIDLHESVIRS 306 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD-YRF 366 A+L YD V ++L TG EA VR L R R V DR + Y Sbjct: 307 HARLSYDAVEEFL-TTGRSAGIPEAARPVVRWLRTAAARLSTVRAARGGVELDREEAYVT 365 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 + E E + A+R++E M+AAN A L + ++ VH D + Sbjct: 366 LDAETREPTAVSPRSDTGAHRLIERLMVAANEAVASWLVARGLPCVFRVH---DEPTEER 422 Query: 427 LAALLK-THGLHVDAE-----EVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE 480 + AL + H V+A L L F R + P + + + + A + Sbjct: 423 VRALEQFAHNFGVEAGFGARLSPLGLAAFEAQYRGSELAPA--IRTVVGKALGPARYTGA 480 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAE----RRR 536 G HFGLG Y +TSPIR+Y D+ HR++K ++G R + E +A R R Sbjct: 481 GGLHFGLGAPLYLHFTSPIRRYADLAVHRVVKRYLQGRRDQRVEAEALASLAHHLNARAR 540 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 AE + L AR + G + IV I G+ V++V++GA I Sbjct: 541 SAAKAETERHRMLVARLFASRVGEE--IEGYIVSIKPFGLVVQMVESGATGTI 591 >UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M940_CAPOD Length = 742 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 149/613 (24%), Positives = 261/613 (42%), Gaps = 65/613 (10%) Query: 24 GVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRI-IAVIHSEKERESAEPE--ELV 79 G + + +G G++ VD F+ + K +HGD + + V + R E E +++ Sbjct: 98 GTLDVSARGNGYVIVDGLDNDIFVAQNFLNKALHGDLVEVYVFPRFRNRNKMEGEISKVL 157 Query: 80 EPFLTRFVGKVQGKNDRLAIVP-------DHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 E RFVG VQ + +VP D +LKD + + ++GD + + Sbjct: 158 ERNKVRFVGTVQMHKNFAFVVPTDARMYTDFFVLKDKL---------NGAQDGDRVIVRI 208 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT-------EMLDE 185 K D S + Q + + LA + L P+ V + DE Sbjct: 209 EDWKDKSD-SPMGVVEQILGKPGEQTTEMHSILAEYGLPYTYPEEVEAFAKKLDLSITDE 267 Query: 186 GL-----VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 + +RE+LT TID +D DDAL K L + ++ V IAD + ++ EG+ Sbjct: 268 EIARRRDMRENLT----FTIDPRDAKDFDDALSFKLLENGNYEIGVHIADVSHYVKEGTI 323 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD+ A RA + YL +PMLP L + CSLR +E + + ++ + D I Sbjct: 324 LDEEAYNRATSVYLVDRVVPMLPEVLCNFACSLRPDEDKYTFSAVFEMNKKAEVVD-IWI 382 Query: 301 FAATIESKAKLVYDQVSDWLENT----GDWQPESEAIAEQVRLL-AQICQ---------- 345 S + Y++ +E G P +I ++ R + A++ + Sbjct: 383 GRTVTHSSFRFAYEEAQSVIEQAKVGEGYTIPAETSITDKERAIPAEVVEAILTLNTLAE 442 Query: 346 --RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 RR R A+ F D+ + +F L E G + + + AN+++EE M+ AN A Sbjct: 443 KLRRKRMRLG-AITF-DKVEVKFDLDENGNPTGVYFKESKEANKLIEEFMLLANRKVAEY 500 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQP-T 461 + +Y VH D A++ G ++ T D L E+ + Sbjct: 501 VAKMKKTFVYRVHDEPDADKLQQFNAVISRFGYSLNLNNRQTTTDSLNNLLEEVKGKKEQ 560 Query: 462 GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 +D+ R + A +T+ H+GL E Y +TSPIR+Y D++ HRLL+ + + Sbjct: 561 NLVDTLAIRSMAKATYTTKNIGHYGLAFEYYTHFTSPIRRYPDVMVHRLLQLYLDN-APS 619 Query: 522 RPQDEITVQMAERRRLNRM---AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 +P+ E + ++ + AERD ++ +++ +A + +FA I ++ G+ V Sbjct: 620 QPEAEYETKCKHSSQMESLAASAERDSIKYMQVKYM--EAHKNQQFAGVISGVTEWGIYV 677 Query: 579 RLVDNGAIAFIPA 591 + N + A Sbjct: 678 EITVNKCEGLVRA 690 >UniRef50_A9RXJ0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RXJ0_PHYPA Length = 717 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 117/427 (27%), Positives = 196/427 (45%), Gaps = 54/427 (12%) Query: 173 EAPDGVATEM-LDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 EA V T LD LV R DLT L TIDS +++DD L A LPD ++++ + +AD Sbjct: 297 EAAQSVMTNPPLDTNLVNRVDLTHLKVYTIDSEDADEIDDGLSAIRLPDGRIKVWIHVAD 356 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 PT W+ LDK AK R+ + YLP +PM P L+ + SLR L + Sbjct: 357 PTRWVPPMHLLDKEAKRRSTSIYLPTGAVPMFPMNLASTVMSLRQGHEACALTVSIIFHC 416 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 DG+I ++ E +TI+ +L YD ++ L E EA ++ LLA++ + R EW Sbjct: 417 DGSIAES-EVMCSTIKPTYRLSYDNAAELL----SMNVEEEA---ELYLLAEVAKSRREW 468 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R++ + P+ +VLD + I +V++A A+ + + ++ Sbjct: 469 RNSQGAIDATVPEASI------KVLDPDSPKPSIIMSVVDQAGPASQLVSEMMI------ 516 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVD-----AEEVLTLDGFCKLRRELDAQPTGFLD 465 A +ALAA + + + ++E+ D ++A P G Sbjct: 517 -----------ACGEALAAFGEEKNISLPYRGQASQEIPAGD--------MEAIPEGPCR 557 Query: 466 S-RIRRFQSFAEIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 + +RR+ A++S +P H LG+ Y +TSPIR+Y D++ H +KA+++GE Sbjct: 558 ALALRRYLGRADMSFMKPISHAALGVRGYVQFTSPIRRYSDLLAHYQVKAILRGEPPPFS 617 Query: 524 QDEITVQMA----ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 + MA + R+ ++ W + G T+F A ++ R G + Sbjct: 618 SAYVEAVMAVVNLQSRQARKLQVSSTRYWAIEYLRRQPRG--TQFQALVLRFVREGEPLV 675 Query: 580 LVDNGAI 586 L++ I Sbjct: 676 LIEKLGI 682 >UniRef50_A8ERD9 Ribonuclease R n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERD9_ARCB4 Length = 617 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 126/442 (28%), Positives = 207/442 (46%), Gaps = 40/442 (9%) Query: 156 DHFVPWWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAK 215 D F+ ++ + LEK D +D+ R DL L F TID S +D DDA++ Sbjct: 168 DEFISLYLYKELYRLEK--LDFEIDAKMDDKNQRVDLRELPFCTIDPNSAKDHDDAIY-- 223 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 D+ L VAIAD + ++ EGS LDK A ++ + YLP +PMLP LS+++CSL+ Sbjct: 224 -FDKDENILYVAIADVSYFVKEGSDLDKLAFKKSTSIYLPSKVLPMLPPILSEEMCSLKE 282 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD-WQPESEAIA 334 R ++ L + E F A I S Y ++ +E D + + I Sbjct: 283 GLDRYSFVFKLHLDLEKLSVKKAELFEAVINSHKNFSYGRIDRVIEGHLDLYSKLDKEIF 342 Query: 335 EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMI 394 + + L +I ++ + R F+ + R L E+ I E +++++EE M+ Sbjct: 343 DYLIPLYEITKKFRKKRLEKGYDFRTTEN-RLKL-RNSELESIEVETSTASHQLIEECML 400 Query: 395 AANICAARVLRDKLGFGIYNVHM--GFDPAN--ADALAALLKTHGLHVDAEEVLTLDGFC 450 ANI A++ + + I+ VH F + D + L L D E +T Sbjct: 401 LANIEASKKVSN---IAIFRVHEEPSFKAISKLVDDVNILGVNVKLQKDVHETITHIQKS 457 Query: 451 KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRL 510 L A+ +D I + Q+ A+ S++ HFGLG +Y+ +TSPIR+Y D++ HR+ Sbjct: 458 AKTSMLSAE----VDELIIQSQTQAKYSSKNLGHFGLGFSSYSHFTSPIRRYSDLVLHRI 513 Query: 511 LKAVIKGETATRPQ--DEITVQMA-ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 LK T P+ DEI ++ R+++++ D D YAR+ G + + + Sbjct: 514 LK------TKQTPKNIDEICEHISLNERKVDQLV-WDFEDRKYARWANKHIGEELK--VK 564 Query: 568 IVDISRG---------GMRVRL 580 +VDI + GM+V L Sbjct: 565 VVDIEKAKAVCYEKIIGMKVVL 586 >UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWX7_9BACL Length = 708 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 162/650 (24%), Positives = 288/650 (44%), Gaps = 55/650 (8%) Query: 23 EGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEP 81 EGV++ +KGF F+ D +IP + M GD ++ + S ++ E +V+ Sbjct: 66 EGVIRLHQKGFAFVYSADLGIEVYIPKGFTQSAMTGDVVLVKVDSVY-KDDRNLEGIVQK 124 Query: 82 FLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPL 137 L R VG + + D + I A+ N +G + E+ + Sbjct: 125 VLERNTKYTVGTLTNAKFFSFVKSDDKNIVKYIKITNAKNFN--LVDGSKVLVEITDYSK 182 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV--ATEMLDEGLVRED---- 191 + + I DD V + +HN+ E P V TE + + + ED Sbjct: 183 VSFEDHKGIIIKSIGHKDDPGVDILSVIYKHNIPNEFPQEVLEQTEKISDEIKLEDKYRD 242 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 T VTID +D+DDA+ + +L V IAD + ++ E S LDK A R + Sbjct: 243 CTNEMVVTIDGDDAKDLDDAI-SVIKTKKGYRLKVFIADVSRYVTEDSPLDKEAANRGCS 301 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 YL +PMLPR+LS+++CSL +R + C + + G ++ + + A I+SK +L Sbjct: 302 VYLADRVVPMLPRKLSNNICSLNPQVLRYTICCDIDFNTKG-FPESYDIYPAVIKSKGRL 360 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH----ALVFKDRPDYRFI 367 Y +V+ E D + E E V +L + + R N A+ F D+P+ + + Sbjct: 361 TYKKVN---EVYADNKETIEEYKEYVPMLKTALELSTKIRANRETRGAIDF-DKPESKVV 416 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLGFGIYNVH----MGFDPA 422 + E GEVLDIV R I+ +++E+ M++AN + ++ F IY +H M Sbjct: 417 VDENGEVLDIVLRERGISEKLIEDFMLSANEVIGEHFYWMQVPF-IYRIHEEPKMEKLRQ 475 Query: 423 NADALAAL-LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEP 481 D A+L +T G + E + + K + E+ L + + R + A S Sbjct: 476 FFDIAASLGYRTKGKIEEIEPYMLANMLRKFKGEV---VETMLSTILLRTMNQARYSINN 532 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKA-VIKGETATRPQDEITVQM--------- 531 HF L + Y +TSPIR+Y D++ HR+++ + G+ + + D ++ Sbjct: 533 IGHFALATKYYTHFTSPIRRYPDLLVHRMIRTYLFNGDVSDQTIDNFISRLPDLAESSSE 592 Query: 532 AERRRLNRMAERDVGDWLYARF-LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 E+R ++ ER+V + LK + T F + ++ G+ + L + + Sbjct: 593 YEKRAVD--CEREVDRMKKCEYMLKYQEQT---FRGIVSSVTNFGVFITLERSNIEGLV- 646 Query: 591 APFLHAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVRMETRSI 638 + A+ D+ + + I + + VY++ D + V +A V +E + I Sbjct: 647 --HIKAMNDDYYTYDQKNMLLIGRRKKKVYRLGDEVIVKVANVDLENQEI 694 >UniRef50_Q30T59 RNAse R n=2 Tax=Campylobacterales RepID=Q30T59_SULDN Length = 649 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 114/412 (27%), Positives = 187/412 (45%), Gaps = 41/412 (9%) Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 +R DL L F TID + +D DDA++ + + L VAIAD + ++ +D A Sbjct: 213 LRVDLRKLPFCTIDPVTAKDFDDAIY---YDEKESTLYVAIADVSYYVEPFGAIDNEAIY 269 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R+F+ YLP +IPMLPRELS+ LCSL+ + R M L + + + + A I S Sbjct: 270 RSFSIYLPHRSIPMLPRELSETLCSLQPHVDRLAYVFEMKLDLETLEVSSSKVYEAIIHS 329 Query: 308 KAKLVYDQVSDWLENTGDWQPESE-AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 + + Y++V + E + Q SE I E + L I R F+ + Sbjct: 330 QRRFNYEEVDELFEGNLEPQNPSEIEIFEYIHKLRVITDALKAKRLKIGYNFRSN-ELEM 388 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 L + + ++ ++E+ M+ AN AA+ + GI+ +H +P N Sbjct: 389 FLDKNSNISSTSYAEETPSHALIEDCMLLANKEAAK----RFTRGIFRIH---EPPNQMK 441 Query: 427 LAAL---LKTHGLHVDAEEVL--TLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEP 481 L L L G+ ++ ++ + T+ K E++ +D+ I + Q A + Sbjct: 442 LQNLYQELAGIGMFINIKKSIKETITEIQKQAAEMNL--VSEVDTLIIQSQMQARYAPIN 499 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV-----IKGETATRPQDEITVQMAER-- 534 HFGLG + Y +TSPIR+Y D+I HRLLKA+ +G R + + + ++E+ Sbjct: 500 AGHFGLGFDEYTHFTSPIRRYSDLIVHRLLKAISNHDTTEGSYVLRNIESLCMSVSEKER 559 Query: 535 -----------RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 R+ R A ++ + AR TD F AE+ D G Sbjct: 560 EASTIEVEFMARKFARWAAENIDELFSARV----TSTDPFFKAELHDTISGA 607 >UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9BACT Length = 765 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 152/642 (23%), Positives = 269/642 (41%), Gaps = 50/642 (7%) Query: 35 FLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTR----FVGKV 90 FL D F+ ++GD++ + R++ E +V L R FVG++ Sbjct: 96 FLPEDGGTPVFVSERNSMAALNGDQVRVQFMAR--RQNHIKEAMVIAILQRKKDTFVGRL 153 Query: 91 QGKNDRLAIVPDHPLLKD--AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELT 148 + + D +V L IP + +G K D A+ ++ + P ++ E+ Sbjct: 154 RVEKDIAFLVTQENLFIHDILIPKKKLKG----GKTDDRALVKITKWPDADHKNLVGEVV 209 Query: 149 QYITFGDDHFVPWWVTLARHNLEKEAPDGV-------ATEMLDEGLV-REDLTALDFVTI 200 + D+ V LA++ L + P V + E+ + RED + TI Sbjct: 210 DVLGEAGDNDVEMNTILAQYGLPYKYPKRVEDAAKKISAEITAQDYAEREDFRDVWTCTI 269 Query: 201 DSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIP 260 D +D DDAL + L + ++ V IAD + ++ EG +D+ A+ RA + YL IP Sbjct: 270 DPRDAKDFDDALSIRKLESGQWEVGVHIADVSHYVKEGDIIDREAQQRATSVYLVDRTIP 329 Query: 261 MLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL 320 MLP L + +CSLR +E + +C L + ++ + I+S + Y++ L Sbjct: 330 MLPERLCNFICSLRPDEEKLAFSCIFNLDDEANVK-SYRIVHTVIKSNRRYAYEEAQQIL 388 Query: 321 EN------TGDWQPESEAI------AEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 E+ TG+ P+ AEQ+ L ++ + R V D + F + Sbjct: 389 EDNGVVDGTGEPAPDPGKAGYKGENAEQIITLDRLAKLIRGRRMKAGSVKFDSEELHFDI 448 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR----VLRDKLGFGI-YNVHMGFDPAN 423 EKG+ + + + AN+++EE M+ AN A V + K + Y VH DP Sbjct: 449 DEKGKPIRCYFKRSKDANKLIEEFMLLANKTVAESVGIVKKGKKAKTLPYRVHDNPDPQK 508 Query: 424 ADALAALLKTHGLHVDAEEV--LTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAEISTE 480 + L G + + T KL E+ + + + R A+ +T Sbjct: 509 FENLREFTAKFGYKLKSASTKGATARALNKLMDEVQGKREEKVIQTIALRSMMKAKYTTH 568 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ--DEITVQMAERRRLN 538 HFGL + Y +TSPIR+Y D + HRL+ G + + +E+ ++ + Sbjct: 569 NIGHFGLAFDYYTHFTSPIRRYPDTMVHRLITRYQNGGRSANKEHYEELCEHCSDMELVA 628 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR 598 + AERD + F+ + G + A I I G+ + +N IP + + Sbjct: 629 QNAERDSIKYKMVEFMSEHIGEC--YDAHISGIQSFGIYAEIDENHCEGMIP---MRDLD 683 Query: 599 DELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVRMETRSI 638 D+ E + + VY++ D I + +A+ +E R + Sbjct: 684 DDYYDFDEKNYCLVGRRRHHVYQLGDPIRIQVAKADLERRQL 725 >UniRef50_D1YYD5 Exoribonuclease II n=10 Tax=cellular organisms RepID=D1YYD5_METPS Length = 498 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 121/407 (29%), Positives = 185/407 (45%), Gaps = 24/407 (5%) Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL L + +ID+ + D+D A+A+P +++ VAIAD A + + S +D A+ Sbjct: 54 DLRNLIWCSIDNDDSLDLDQLTVAEAMPTGAVKIRVAIADVDAVVRKRSAIDDHARQNTT 113 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + Y PMLP +LS DL SL R + M +ADG++ + + + A + + AK Sbjct: 114 SVYTVAETFPMLPEKLSTDLTSLNYGSDRLAVVIEMVFAADGSLRSS-DIYRAMVRNHAK 172 Query: 311 LVYDQVSDWLENTGDWQPESEAI---AEQVRLLAQICQRRGEWRHNHALVFKDRPDYR-F 366 L Y+ V+ WLE TG +A+ E +RL ++ Q R+ H + + + R Sbjct: 173 LAYNSVAGWLEGTGPMPQGLDAVDGLRENLRLQDRVAQTLKSIRYKHGALELETIEARPV 232 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 +GE E+ +V + A ++ E MIAAN AR L D F + + P D Sbjct: 233 FVGE--ELKGLVTSKQNRAQDLIAEFMIAANGVVARYL-DSKNFPVLQ-RVVRKPKRWDR 288 Query: 427 LAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQPTGFLD---SRIRRFQSFAEISTEPG 482 + L G + A + L+ F + D P F D S I+ S + PG Sbjct: 289 IVGLAAERGSWLPRAPDSKALEQFLATAKAQD--PLRFPDLSLSVIKLLGSGEYMVQLPG 346 Query: 483 P----HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE---ITVQMAERR 535 HFGL ++ YA T+P R+Y D+I RLLKA I G T DE + E Sbjct: 347 EDGAGHFGLAVKDYAHSTAPNRRYPDLITQRLLKAAISGVTPPYDHDELEALAAHCTEEE 406 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 ER V A L+ + G +F A + + G VR++D Sbjct: 407 DEATKVERQVRKSAAALLLRSRVG--EQFDAFVTGATDHGTWVRILD 451 >UniRef50_B6FY97 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY97_9CLOT Length = 462 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 168/341 (49%), Gaps = 21/341 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L TID +++D+DDA+ + L V IAD + ++ E S +DK A+ R Sbjct: 78 RVDLRDLKTFTIDGKNSKDLDDAISINKNFNGNYILGVHIADVSHYVREYSCIDKMARRR 137 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 A + YL IPMLP E+S+ +CSL E + L+ + + G I N + I S Sbjct: 138 ATSVYLNDRVIPMLPPEISNGICSLNQGEEKLTLSVFIEIDKHG-ITVNHWICESVIASH 196 Query: 309 AKLVYDQVSDWLENTGDWQPES--EAIA--EQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 + YD VSD +EN E + I E+ LAQI + R R AL F D P+ Sbjct: 197 LRTNYDDVSDIIENKDKKLIEQYKDFIQDFEEADKLAQILRDRRIKR--GALSF-DTPEK 253 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR-VLRDKLGFGIYNVHMGFDPAN 423 R IL E +D++ E RR AN I+EE MI AN A+ + +++ F IY + Sbjct: 254 RVILDENRIPIDLITEERRAANIIIEEFMIVANETVAKHFVNEEIPF-IYRILENPHRNK 312 Query: 424 ADALAALLKTHGL---HVDAEEVLTLDGFCKLRRELDAQPT----GFLDSRIRRFQSFAE 476 + + T+ L ++ +E+ LD ++R +++ P L +R+ A Sbjct: 313 NKVPSTFVTTYDLGLREIELDEITPLD----IQRMINSVPNEGVEELLKCIVRKANRQAR 368 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 S+ H+ L + Y +TSPIR+Y D+ HR++K + G Sbjct: 369 YSSSCTEHYTLATDCYCHFTSPIRRYPDLQIHRIIKDYLNG 409 >UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group RepID=A9UUC9_MONBE Length = 951 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 111/353 (31%), Positives = 168/353 (47%), Gaps = 33/353 (9%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 REDL L+ +ID D+DDAL + LP+ ++ V IAD + +I + LD+ A R Sbjct: 449 REDLRHLEVCSIDPPGCTDIDDALHLRDLPNGHFEVGVHIADVSHFIKPNTALDQEAAKR 508 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC--RMTLSADGTIEDNIEFFAATIE 306 T YL I M+P LS +LCSLR E R +C MT AD + F + I Sbjct: 509 GTTVYLSNRRIDMVPGLLSSNLCSLRGGEERFAFSCIWEMTDQADII---STRFCKSIIR 565 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 S+A L Y + +++ D +++I ++ LA+I +RR R + P+ RF Sbjct: 566 SRAALEYSEAQARIDDETDQTTLTDSI-RRLNALAKIVKRR---RIEAGALMLASPEVRF 621 Query: 367 -ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL-GFGIYNVHMGFDPANA 424 I E + +D+ + N +VEE M+ AN+ +AR + + + H P+N Sbjct: 622 RIDTETHDPVDVQMKQLHDTNSLVEEFMLLANVSSAREIHKQFPTCAVLRRHPAPPPSNF 681 Query: 425 DALAALLKTHGLHVDAEEVLTLDGFCKLRRELD-AQPTG--FLDSRIR-----------R 470 + L + G+ L+ +L LD AQP G ++++ +R Sbjct: 682 EPLLKAAEAAGV------TLSTTSSKELAVSLDMAQPEGQPYMNTLLRILATRCMLPAQY 735 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 F S TE G H+GL Y +TSPIR+Y D++ HRLL A I G T P Sbjct: 736 FCSGTVPQTEFG-HYGLASPIYTHFTSPIRRYADLLVHRLLAACI-GADPTYP 786 >UniRef50_A8ZPG0 Exoribonuclease II n=2 Tax=Acaryochloris marina MBIC11017 RepID=A8ZPG0_ACAM1 Length = 623 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 101/324 (31%), Positives = 155/324 (47%), Gaps = 36/324 (11%) Query: 198 VTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGF 257 +TID A + D+DDA++ + D L V IAD + GS +D+ AK R T Y Sbjct: 32 ITIDGAHSRDLDDAIWIEE-KDHLTTLSVHIADVAELVQPGSLVDQEAKSRIQTLYFRHN 90 Query: 258 NIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVS 317 N PMLPR LS+D SL +++RP + +TL+ I+ +++ + + + S + Y+Q Sbjct: 91 NTPMLPRCLSEDKLSLLEHQLRPTITLEITLNQSAEIQ-HVDVYESRLSSHKRFTYEQAD 149 Query: 318 DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDI 377 + L + +P+S I + Q+ QRR + + L + + L E G +L Sbjct: 150 EALMDIS--RPDSNFIYRCWQWAEQLYQRRIQSENFDGLTLPEG----YYLDENGNLLS- 202 Query: 378 VAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY--NVHMGFDPANADALAALLKTHG 435 R + I++E MI AN A+ L IY + H P AAL+ Sbjct: 203 TDFTRYQSYLIIQEFMILANTAMAQWLAQNNIPAIYRNHTHRAIGPEQTHQFAALVN--- 259 Query: 436 LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATW 495 +EE +RR L +L+ AE EP HF L L AY + Sbjct: 260 --AQSEE--------DIRRVL----MSWLNP--------AEYGPEPHGHFALNLSAYCHF 297 Query: 496 TSPIRKYGDMINHRLLKAVIKGET 519 TSPIR+Y D+INHR++KA +KG++ Sbjct: 298 TSPIRRYPDLINHRMVKAHLKGQS 321 >UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4AAR6_MYCHJ Length = 694 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 120/460 (26%), Positives = 202/460 (43%), Gaps = 30/460 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL +TID T+D DDA+ K + L V IAD ++ + S +D A+ R Sbjct: 240 RTDLRDELVITIDGEDTKDFDDAISVKKTNEGNFLLKVHIADVAHYVKQDSPIDVEAQRR 299 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLP IPMLP ELS+ +CSL+ N R + ++ G +I+ + + I SK Sbjct: 300 GTSIYLPHTVIPMLPEELSNGICSLKPNVDRFTITMESLINKRGE-NLSIKIYPSVINSK 358 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 +L Y V+++ + + + + ++ ++ ++ N + + + IL Sbjct: 359 WRLTYKDVNNFFNGKSSFNDTN--LEKMLKTAQELNTILSLFKKNQGYIDLAIDEIKIIL 416 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 E+G + + R + ++E MI AN + L + +Y VH DP Sbjct: 417 DEQGFTESLKLKSRGTSEELIENFMIRANENVSEFLTKRKIPILYRVHNKPDPEKIMIFN 476 Query: 429 ALLKTHGLHVDAEEVLTLDGFCK-LRRELDAQPT----GFLDSRIRRFQSFAEISTEPGP 483 +LK G+ + L L+ + R++D T FL I R A STE Sbjct: 477 QILKVLGV----KNTLKLNSNSREFARKIDEIKTKNNDNFLKYSILRTMQKAIYSTENIG 532 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---------KGETATRPQDEITVQMAER 534 HFGL Y+ +TSPIR+Y D+I HR+++ I E T+ +T ++ E+ Sbjct: 533 HFGLAANFYSHFTSPIRRYPDLILHRIIRFFIFEKNKNFDFFNEILTK-NSYLTTEL-EQ 590 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI-AFIPAPF 593 + N ER + + ++K G F A+I I + G V + NG A + Sbjct: 591 KAFN--LERKIVNIKKTEYVKKLIG--QTFNAQITSIIKSGFFVEI--NGLFDAMLSNKS 644 Query: 594 LHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 L ++ E+G +K+ + ID+ I V + Sbjct: 645 LPNNENDPYQLTEDGFCIYNSRRRFKLGEFIDIKIESVNV 684 >UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCD0_PLALI Length = 808 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 111/349 (31%), Positives = 162/349 (46%), Gaps = 26/349 (7%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL +TID + D DDA+ K D L V IAD ++ G++LDK A R Sbjct: 250 RLDLRDELIITIDPLTARDFDDAISLKRHEDGSWTLGVHIADVAHFVRPGTELDKEAIRR 309 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLPG +PMLP LS+ L SL+ ++VR V + + S DG ++ + F A I+ + Sbjct: 310 GNSVYLPGKVLPMLPEVLSNALASLQQDKVRFVKSAFIEYSPDGMVK-HTSFANAAIKVR 368 Query: 309 AKLVYDQVSDWLEN---TGDW-QPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 + Y+QV L N G+ PE E + E++ Q+ +R E A++ + R Sbjct: 369 RRFAYEQVMPLLLNRQSPGEHPAPEGETVPEEI---CQLLERMYEL----AMILRKRRFS 421 Query: 365 R----FILGE-------KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 R LGE G V +++I+EE M+AAN+ A + F + Sbjct: 422 RGALELSLGEVELDCNDDGNVTGAHRALHDASHQIIEEFMLAANVAVAEEFDRRGWFFLR 481 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQ 472 VH D A + T G D L E+ QP F L+ + R Sbjct: 482 RVHDSPDELRMQNFAKFVATLGY--DLPRAQDRQAIQALLNEVAGQPEAFPLNYALLRSL 539 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 AE S E H+ L ++ YA +TSPIR+Y D+ HRLL+ VI + T Sbjct: 540 KQAEYSPEKIGHYALAVDNYAHFTSPIRRYPDLTIHRLLEHVIADASFT 588 >UniRef50_C7JES0 Ribonuclease R n=8 Tax=Acetobacter pasteurianus RepID=C7JES0_ACEP3 Length = 676 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 125/414 (30%), Positives = 178/414 (42%), Gaps = 66/414 (15%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L +TID AS D DDAL+A+ D LIVAIAD W+ GS LD+ A+ R Sbjct: 260 RTDLRHLPLITIDDASAHDFDDALWAEQT-ADGFHLIVAIADVAHWVKPGSALDEEARER 318 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLP +PMLP LS CSL + R L M ++ G + + + ++S Sbjct: 319 GNSIYLPDKVVPMLPLALSAQACSLLPGQDRLCLFADMHITPQGHVV-SAQINRGIMQSA 377 Query: 309 AKLVYDQVSDWLENT---GDWQPESEAIAEQVRLLAQICQRRGEWRH---NHALVFKDRP 362 A+L Y+ V + T PE A LL + + R ++ ++ Sbjct: 378 ARLTYEAVQHAFDATPHQTSLPPEHPAALLPPTLLPTLRKVGATIRQAATQRGVMEREET 437 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + G+ V + A+ +V MI AN AA L+ Sbjct: 438 GWNVQFDATGQPCAFVPRNTQEAHYMVAACMILANQIAAEKLQ----------------- 480 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPG 482 A AL AL +TH AQP+ DS + A ST Sbjct: 481 -AQALPALFRTH-----------------------AQPSP--DSP----RPMARYSTRAA 510 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLK----AVIKGET-ATRPQDEITVQM--AERR 535 PH+GL L Y +TSPIR+Y D++ HR L + ++ ET A P + Q+ ERR Sbjct: 511 PHYGLRLGNYTHFTSPIRRYADLLAHRALTQANDSSMQAETSAYTPDVALASQLNFTERR 570 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 M +D + L A FL G R +A ++ +R G+RVRL G +F+ Sbjct: 571 AATIM--QDSLNRLAAIFLAPLVG--QRMSAHVMTATRHGLRVRLTKTGTPSFL 620 >UniRef50_C9RQ37 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQ37_FIBSS Length = 812 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 112/413 (27%), Positives = 171/413 (41%), Gaps = 37/413 (8%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D LD + ID D DDA+ + P+ +L V IAD + ++ EGS LD+ A R Sbjct: 214 RVDYRKLDILCIDPEGAMDHDDAISVERKPNGGYKLGVHIADVSYYVPEGSDLDEEALER 273 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 ++T YLP +PMLP +LS +CSL R C + L + + +F + + Sbjct: 274 SYTQYLPWTAVPMLPEKLSSGVCSLHEGVDRCAFTCMIDLDKEANVL-GWDFHRSVVNIT 332 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 + Y Q +E D ++ LA++ R L+ +Y Sbjct: 333 KGITYQQAVKMMEEGDD----------SIKALAEVTALLKRNRTKDGLLEFQTTEYGCKF 382 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL- 427 E GE + I +N VEE M+ AN C A+ L+ + GIY +H D + L Sbjct: 383 NENGEPVKIFPREHDDSNSWVEECMLIANNCCAKELKQRKLQGIYRIHEAPDTKDIMELY 442 Query: 428 ----------AALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG--FLDSRIRRFQSFA 475 +L+ G + L F KL L + G L +RI R A Sbjct: 443 YMYPDLFKDAPVMLRDLGKPRSGDTNLNPVAF-KLYEHLVKRAAGDETLTNRILRSMQKA 501 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ------DEITV 529 + HF L + Y+ +TSPIR+Y D+ HR L K A R D I+ Sbjct: 502 HYDSNSFGHFALNWQDYSHFTSPIRRYADLWCHRELARKGKEIDAERVNSVIEVCDLISA 561 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 + ++ R++ + W+ LK + G F A + I G+ V + D Sbjct: 562 NEIKNMKVERISIKVCSCWI----LKSRIGDS--FEASVTGIEEWGIYVSIDD 608 >UniRef50_B7FWN1 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FWN1_PHATR Length = 593 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 121/414 (29%), Positives = 184/414 (44%), Gaps = 47/414 (11%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D TID + +D+DDAL L D ++++ V IAD + ++ S +D A+ R Sbjct: 87 RRDYRDARIFTIDPTTAKDLDDALHVTKLADGRVEIGVHIADVSYFVRPDSPVDTEAQYR 146 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED-----NIEFFAA 303 A T YL +PMLPR L + CSL N R +C T++ DGT+ ++ + + Sbjct: 147 ATTVYLVDRTVPMLPRPLCEVACSLNENVERLAFSCVWTMNVDGTVRQKNGNPDVWYGRS 206 Query: 304 TIESKAKLVYDQV------------SDWLENTGDWQPESE---------AIAEQVRLLAQ 342 I+S A+L Y SD + W PES +A+ VRL+ + Sbjct: 207 VIKSCARLDYATAQNIIDGKVGRGESDKAIDEALW-PESRRPTGGHTTAQVAQDVRLMHR 265 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAE-PRRIANRIVEEAMIAANICAA 401 + R + R ++ + + F L G+ + A P R +NR+VEE M+ AN A Sbjct: 266 VAMARRQLRFDNGALALNGIKLTFQLDTDGQTPLLAAPYPLRDSNRLVEEYMLMANYLVA 325 Query: 402 RVLRDKLG-FGIYNVHMGFDPANADALAALLKT-HGLHVDAEEVLTLDG-FCKLRRELDA 458 L G + H D +A++ K G +VD L C+L RE + Sbjct: 326 ERLITHTGRRAMLRRHPEPLEDGLDKVASVAKAGMGFNVDISSSQALHASLCRLGREC-S 384 Query: 459 QP------TGFLDSRIRRFQSFAEISTEPGP--HFGLGLEAYATWTSPIRKYGDMINHRL 510 P T L + ++ FA + + HF L + Y +TSPIR+Y D+I HRL Sbjct: 385 DPLVLQCVTQMLMTPMQPADYFAAGTMDMAAWKHFALNIPYYTHFTSPIRRYADVIVHRL 444 Query: 511 LKAVIKGETA--TRPQD-----EITVQMAERRRLNRMAERDVGDWLYARFLKDK 557 L+A I G A T P D I E+R ++ A+ + F+K K Sbjct: 445 LQATIDGPEAVQTFPLDTDAVESIAAHCNEKRMASKKAQERCDRVFLSLFVKAK 498 >UniRef50_Q01V71 Exoribonuclease II n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01V71_SOLUE Length = 484 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 118/409 (28%), Positives = 189/409 (46%), Gaps = 27/409 (6%) Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 +DLTAL + +ID+ + D+D +A+ P ++++VAIAD + +A+GS D+ A Sbjct: 45 KDLTALLWSSIDNDDSRDLDQIEWAERTPA-GIRVLVAIADVDSAVAKGSPADRHAASET 103 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 + Y PMLP +LS D SL NE R + MT+ A+G+I N + A + ++A Sbjct: 104 TSVYAQIRTFPMLPLKLSTDRTSLNENENRAAVVIEMTVCAEGSIGAN-SIYRALVRNRA 162 Query: 310 KLVYDQVSDWLENTGDWQPESEAIAEQVRLL-----AQICQRRGEWRHNHALVFKDRPDY 364 +L Y V WLE G + + AE + L A C R R AL F DR + Sbjct: 163 QLTYSAVGAWLEGKGSMPAKVASSAELQQQLQLQNEAAHCMRAARDRLG-ALTF-DRAEL 220 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 + + E G V I A ++R++E+ MI AN A+ LR I V DP Sbjct: 221 QATV-ENGRVSGIDARRANTSSRLIEDFMIGANEVMAQTLRSAGVTSIRRVVK--DPERW 277 Query: 425 DALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAE---ISTE 480 + L T+G H+ + + L+ R++ D P F D + + +++ Sbjct: 278 PRMVELAATYGYHLPPDPDPAALNAMLVARKKAD--PDHFADVSLTVLKLMGPGEYVASR 335 Query: 481 PGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ---DEITVQMAE 533 PG HFGL Y T+P R++ D++ RL+KA+ + + D I Sbjct: 336 PGTEATGHFGLAAHDYTHSTAPNRRFADLVTQRLVKALAARQRSPYSDAELDSIAANCTL 395 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 + R +R + L A L + G F+A + ++ G+ VR+ D Sbjct: 396 KEDNARKVQRAMVKRLAAVALAGRVGQT--FSAVVTGVTPKGVFVRITD 442 >UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6L0_9BACT Length = 727 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 171/677 (25%), Positives = 269/677 (39%), Gaps = 87/677 (12%) Query: 24 GVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE--KERESAEPEELV 79 G+++ G L E K FI P + MH D+++A + E ++R E V Sbjct: 80 GILQVHANGHAHLLSETPGVKDVFISAPNLGTAMHSDKVVARLMHEGREQRRGGAQEARV 139 Query: 80 EPFLTR----FVGKVQGKNDRLAIVPDHPLLKDAI-----PCRAARGLNHEFKEGDWAVA 130 L R VG +Q + ++PD P L+ I P A G + +W Sbjct: 140 IKILERANDTIVGTLQSSKNFFYVIPDDPRLQHNIYVKPEPKGAQVGDKVVVRFEEW--- 196 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-------- 182 E R +G E+ + + V + ++ L PD V E Sbjct: 197 ESRHVNPEG------EVIEVLGPAHAPGVDMLSIIRKYQLPMAFPDAVEREAEKIFETVH 250 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 DE RED VTID +D DDA+ + L +L V IAD + ++ G LD Sbjct: 251 PDEIARREDCRGQFIVTIDPDDAKDFDDAIHVERLARG-WRLGVHIADVSHYVRPGHPLD 309 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A+ R + YL IPMLP LS+ +CSL+ R + G I F Sbjct: 310 REARKRGNSTYLADRVIPMLPERLSNGICSLKPGVERLTFGAFIDFDESGKIR-KARFAR 368 Query: 303 ATIESKAKLVYDQVSDWLEN-----TGDWQPESEA--------------IAEQVRLLAQI 343 + I+S A+L Y Q LE+ T +++ + + E+V+L ++ Sbjct: 369 SVIKSAARLTYRQALAILEDRPVPATPNYERGGKVHLDAKPVPLNVTPELRERVKLAWEL 428 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 + R + D P+ + L ++G + + I++++VEE M+AAN A+ Sbjct: 429 ASLLRKNRFAAGSLDLDFPEVKVWLDDQGRAVRLEKMDNDISHQLVEEFMLAANEVVAKA 488 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD------ 457 L+D+ +Y +H DP L ++G G RREL Sbjct: 489 LKDRKIPTVYRIHEDPDPDRLADYRELAISYGFRA---------GDLTQRRELQRLLAAT 539 Query: 458 -AQPTGFLDSRIRRFQSF-AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 +P + A +T+P H+GL Y +TSPIR+Y D++ HR L Sbjct: 540 RGKPEEYALKLGLLKSLKRARYATDPVGHYGLAKVNYTHFTSPIRRYADLLVHRALAGEK 599 Query: 516 KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK--AGTDTRFAAEIVDISR 573 G EI ++ R + AERD F + + A A +VD+ Sbjct: 600 LGGVGA--VGEIAAHISTTERTSADAERDSTMLKKMEFFQRQLTARRPEEMRAIVVDVRS 657 Query: 574 GGMRVRLVD---NGAI--AFIPAPFLH--AVRDELVCSQENGTVQIKGETVYKVTDVIDV 626 G+ V L D G I + +P F + R V ++N T Y++ DV+ V Sbjct: 658 YGLVVELPDCLITGLIHVSSLPDDFYQFDSTRLRFVGRRKNKT--------YQIGDVLQV 709 Query: 627 TIAEVRMETRSIIARPV 643 ++ V R I PV Sbjct: 710 IVSRVDAYKRQIDFVPV 726 >UniRef50_B8C1F9 Ribonuclease (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C1F9_THAPS Length = 600 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 111/386 (28%), Positives = 174/386 (45%), Gaps = 42/386 (10%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D + TID + D+DDAL LPD ++++ V IAD + ++ S +D+ A R Sbjct: 142 RRDYRSHRVFTIDPTTARDLDDALHVTQLPDGRVEIGVHIADVSHFVQPSSAVDEEALRR 201 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI-----------EDN 297 A T YL IPMLPR L + CSL N R + ++ DGT+ ED+ Sbjct: 202 ATTVYLVDRVIPMLPRPLCEIACSLNENVERLAFSVVWRMNMDGTLSKKKGSAEKCKEDD 261 Query: 298 IEFFAATIESKAKLVYDQVSDWLEN-TGDWQPESEA-------------------IAEQV 337 I + I+S A+L Y + ++N ESE +A V Sbjct: 262 IWYGRTVIKSCARLDYATAQNIIDNKVAAANGESEVDETLWPKSRQPTGGHTIAEVAADV 321 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAE-PRRIANRIVEEAMIAA 396 RL+ Q+ +R + R + + + F L + GE + A P R +NR++EE M+ A Sbjct: 322 RLMHQVAMKRRKLRFENGALALNGIKLTFQLEDDGETPKLCAPYPIRDSNRLIEEYMLLA 381 Query: 397 N-ICAARVLRDKLGFGIYNVHMGFDPANADALAALLK-THGLHVDAEEVLTL-DGFCKLR 453 N + A R++ G + H A + + K + +D TL + +L Sbjct: 382 NFLVAQRLITHAKGRALLRQHSPPLEAGMQNVVDVSKESFDFDIDITSSKTLQESLSRLS 441 Query: 454 RELDAQ-----PTGFLDSRIRRFQSFA--EISTEPGPHFGLGLEAYATWTSPIRKYGDMI 506 R D + T L + +R + A E++ E HF L + Y +TSPIR+Y D+I Sbjct: 442 RTCDDELVIQCVTESLMTPMRPAEYIAAGEVNDEDWQHFALNIPYYTHFTSPIRRYADVI 501 Query: 507 NHRLLKAVIKGETATRPQDEITVQMA 532 HRLL+A + + PQ + + A Sbjct: 502 VHRLLQATLDDAVSEFPQTQQEIHSA 527 >UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5N0_SCHJY Length = 969 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 117/419 (27%), Positives = 185/419 (44%), Gaps = 38/419 (9%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D L +ID +D+DDAL A+ LP+ ++ V IAD T ++ + +D A R Sbjct: 497 RADFRELLVCSIDPPGCQDIDDALHARPLPNGNYEVGVHIADVTHFVKPSTAMDAEASSR 556 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL I MLP L DLCSLR R +C + + + N+ F + I SK Sbjct: 557 GTTVYLVDKRIDMLPMLLGTDLCSLRPRIERFAFSCIWEMDENANVV-NVSFTKSVISSK 615 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 Y + +++ P +E + +RL ++ QRR + N AL P+ + + Sbjct: 616 EAFSYAEAQARIDDKKAQDPLTEGMRILLRLSKKLKQRRLD---NGALNLAS-PEVKVQM 671 Query: 369 -GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL-GFGIYNVHMGFDPANADA 426 E + +DI + N +VEE M+ ANI A+ + + + H +N +A Sbjct: 672 DNETSDPMDIEIKQLLETNSLVEEFMLLANISVAQKIYETFPQTAVLRRHAAPPASNFEA 731 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELD-----AQPTGFLDSRIRRFQSFAEISTE- 480 L + LHV + L D L LD A P + ++ +R + +S E Sbjct: 732 LQDI-----LHVCKDMQLKCDSSKALAHSLDECSDNADP--YFNTLLRILTTRCMLSAEY 784 Query: 481 --PGP-------HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------ATRPQD 525 G H+GL Y +TSPIR+Y D++ HR L A I ET + Sbjct: 785 FCSGTFAYPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAASIDYETLHPSLQNKQKLV 844 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 +I + R R+ +MA R ++ + LK G +TR A ++ + + G V + G Sbjct: 845 DICNGINYRHRMAQMAGRASVEYYVGQALK---GRETREEAHVIKVFKNGFVVFIAKFG 900 >UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA Length = 721 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 107/418 (25%), Positives = 183/418 (43%), Gaps = 32/418 (7%) Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 +R + + ++ID ++D+DDA++ K L D + L ++IAD + ++ + LD A Sbjct: 248 IRRSIIDREIISIDPVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTILDADAFK 307 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI--EDNIEFFAATI 305 R + YL IPMLP +S+++CSL E R + C M + DG I +D + A + Sbjct: 308 RGTSTYLVDRVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKD---VYPAIM 364 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 ++ ++ YD+V+D+ E ++ + + E + ++ + V D + + Sbjct: 365 KNYRQMSYDEVNDFYEGKSRFESATLTMKEMLLEAKELHHILRNKKIKDGYVDFDIKEPK 424 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-----FG-----IYNV 415 IL E G +DI R+ A +VE+ MIAAN + + F IY V Sbjct: 425 IILDETGVPIDIKIYERKTAQMMVEDFMIAANEAVTMFAEEHMDKTLKEFNLEMPFIYRV 484 Query: 416 HMGFDPANADALAALLKTHGLHV--DAEEVL--TLDGFCKLRRELDAQPTGFLDSRIRRF 471 H N K ++ D E + T+ + K+ P + + R Sbjct: 485 HDKPSIINLQKFEIEAKKLSFNISHDFENIQPNTISNWLKMNDNHVNLP--LISKLLLRS 542 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL-KAVIKGETATRPQ------ 524 + A HFGL + Y +TSPIR+Y D+I HRLL + ++ T Q Sbjct: 543 MAKASYEIINTGHFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSYTDKQRVELVN 602 Query: 525 --DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 IT + + + ERDV +A ++ G + F + +S G+ V L Sbjct: 603 KLKLITEESNKNEIIAVKTERDVNAAKFAEYMNLHIGKE--FIGVVTTVSSFGVFVEL 658 >UniRef50_C1N1M6 Predicted protein (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N1M6_9CHLO Length = 889 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 126/434 (29%), Positives = 183/434 (42%), Gaps = 52/434 (11%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDD-------KLQLIVAIADPTAWIAEGSKL 241 REDL +L ++D D+DDAL + L DD +L+L V IAD T+++ + + Sbjct: 464 REDLRSLRVCSVDPPGCRDIDDALSCRVLVDDDDGAETGQLELGVHIADVTSFLRPNTAM 523 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE---DNI 298 D A+ R T YL + MLP+ L++D+CSLR R + A + + Sbjct: 524 DAEARKRGTTTYLVQRRLDMLPKPLTEDICSLRGGVERLAFSVFFRFDAKTCLPVPGVSP 583 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQI--CQRRGEWRHNHAL 356 F + I+S A L Y + + +++ D P + +R + I C R R A Sbjct: 584 RFTKSAIKSSAALTYQEAQELMDDETDESP----LTRDLRRVLNINRCARALRKRRVDAG 639 Query: 357 VFK-DRPDYRFIL-GEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR-VLRDKLGFGIY 413 P+ RF L + LD+ R AN++VEE M+ AN+ AA +L+ + Sbjct: 640 ALTLASPEVRFELDASTQDPLDVAMYVTREANQMVEEMMLLANVAAAEAILKAFPSHALL 699 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQ 472 H P D L G+ +DA TL D RR D L R Sbjct: 700 RRHPTPAPRMFDPLLKACAAVGVDIDASSSKTLADSLDAARRPGDPYFNTLLRIVATRCM 759 Query: 473 SFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP--- 523 S A S H+GL Y +TSPIR+Y D++ HRLL A + E RP Sbjct: 760 SQAVYCVSGAHSVNDRVHYGLAAPLYTHFTSPIRRYADVVVHRLLNAALGLE---RPDAS 816 Query: 524 -QD----EITVQMAERRRLNRMAERDVGDWLYAR--FLKDKAGTDTRFAAEIVDISRGGM 576 QD + T + R N + L+ F K+KA TD R Sbjct: 817 LQDGDALKATAENINSRHRNSQSAGRASVELHTHIFFKKNKAETDARV------------ 864 Query: 577 RVRLVDNGAIAFIP 590 +R+ NG I F+P Sbjct: 865 -IRVRANGIIVFVP 877 >UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7GAY1_PHATR Length = 908 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 106/377 (28%), Positives = 172/377 (45%), Gaps = 21/377 (5%) Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 +D R+D+ + ++ID + +D+DDAL LP+ Q+ V IAD T ++ G+ +D Sbjct: 486 VDNSPGRQDIRHIPVLSIDPPNCKDIDDALHCTVLPNGNFQVGVHIADVTHYVQAGTAID 545 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A R+ + YL + MLP L+ DLCSL+ N R + ++ + I N+EF Sbjct: 546 LEAANRSTSTYLVNKRLDMLPSLLTTDLCSLKGNVDRYAFSVLWEVTPEAEIL-NVEFQK 604 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 I S A L Y Q ++ D ++ + V+ LA + ++ + R + + P Sbjct: 605 TIIHSIAALTYQQAQTMIDQPDD---PNDIQSNAVKRLASLARKFRKRRIDAGALTLASP 661 Query: 363 DYRFIL-GEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRDKLGFGIYNVHMGFD 420 + +F+L E D+ A AN +VEE M+ AN+ + ++LR + H + Sbjct: 662 EVKFVLDSESLNPTDVQAYALLEANAVVEEFMLLANVTVSKKILRHFPTLSVLRRHPAPN 721 Query: 421 PANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAE--I 477 A D+L + K+ L ++ ++ L D E D L R S A+ Sbjct: 722 RAMFDSLISKAKSKDLDINIDDSKRLADSLDAAVVESDPYVNKLLRILSTRCMSPAQYFC 781 Query: 478 STEPGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DE 526 S E P H+GL Y +TSPIR+Y D+ HRLL A + G P + Sbjct: 782 SGEFRPMEWHHYGLAAPVYTHFTSPIRRYADVCVHRLLAAAV-GVAPLPPHLSSKSYLHD 840 Query: 527 ITVQMAERRRLNRMAER 543 + M R R ++A R Sbjct: 841 LCANMNRRHRAAQLAGR 857 >UniRef50_B4PC29 GE21064 n=5 Tax=Drosophila RepID=B4PC29_DROYA Length = 1083 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 118/431 (27%), Positives = 200/431 (46%), Gaps = 35/431 (8%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R+DL + TID + D+DDA+ + L +++ ++ V I+D + ++ E ++LD K R Sbjct: 560 RKDLRKVCIFTIDPMTARDLDDAVSIEKLGENEYEVGVHISDVSHYLLEDNELDNIVKER 619 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT-IEDNIEFFAATIES 307 + + YL I MLP+ L CSL E + + ++ +GT ++ EF I S Sbjct: 620 STSIYLANEVIHMLPQTLCMR-CSLLPGEDKFAFSVFWRMNGEGTMLQKKPEFCRTVINS 678 Query: 308 KAKLVYDQVSDWLENTGDWQPE-----------SEAIAEQVRLLAQICQRRGEWRHNHAL 356 ++ Y+ ++N + E S+ I +V L I + R ++ Sbjct: 679 CSQFAYEHAQKIIDNPNERFTENDFPTILNGFNSDDIKNRVLWLHDIASSIRKTRFDNGS 738 Query: 357 VFKDRPDYRFILGE-KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + + RF+L GE L E +R ANR++EE M+ AN AR + D F V Sbjct: 739 LTINNAKLRFVLDPVSGEPLSFEVEKQREANRLIEEFMLLANQAVARFIHD--SFPDIAV 796 Query: 416 HMGFDPANADALAAL---LKTHGLHVDAEEVLTL-DGFCKLRRE------LDAQPTGFLD 465 P +L +L L G +D L + +L E ++A + L Sbjct: 797 LRNHPPPLTKSLKSLREKLLVLGFELDYSSSKALQESMVRLCNEAPNPVAMNACLSQLLM 856 Query: 466 SRIRRFQSF-AEISTEPGP--HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-AT 521 + R F +E EP H+ L + Y +TSPIR+Y D++ HRLL A +K T Sbjct: 857 KPMARATYFCSEGKAEPADLWHYALSIPIYTHFTSPIRRYPDILVHRLLAAALKYCTPPK 916 Query: 522 RPQDEI--TVQMAERRRLN-RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 R DE+ ++A R+ N ++A D G+ + R++ +K G R A +++I + M V Sbjct: 917 RTPDELHALTKLANERKYNAKLAGDDSGNLYFKRYVHNKQGIYMR--AVVIEIFQHTMNV 974 Query: 579 RLVDNGAIAFI 589 +++G + I Sbjct: 975 VTLESGHVIGI 985 >UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Verrucomicrobia RepID=B5JNV1_9BACT Length = 861 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 136/525 (25%), Positives = 226/525 (43%), Gaps = 73/525 (13%) Query: 165 LARHNLEKEAP-------DGVATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKA 216 L ++NL+ E P + V +++ ++ L+ R DL TID +D DDA+ + Sbjct: 236 LHKYNLDPEFPPEVMKEAESVPSKVTEKQLIGRRDLRKAFTFTIDPDDAKDFDDAI-SLE 294 Query: 217 LPDDK-LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 PDDK +++ + IAD A++ G+KLD A R + YL G IPMLPR LS+ +CSL Sbjct: 295 YPDDKHVRVGIHIADVAAYVRGGTKLDTEAFNRGNSTYLVGIVIPMLPRSLSNGICSLVE 354 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE-------------- 321 +E R + +T + G I + +++ I S +L Y Q L+ Sbjct: 355 DEDRLTKSVFVTFNKKGDIVE-VDYANTVIRSNKRLTYKQAYTLLKENDLQAARDLKLPP 413 Query: 322 --NTGDW--------QPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK 371 TG E + + +R L I + R H + D + + + EK Sbjct: 414 AHQTGSTGRALNTLSDAELGKLQKGIRELWSIASKLRAARFKHGSLNLDMEETKIFVDEK 473 Query: 372 GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALL 431 G + +++++EE M+ AN C A+ ++ IY VH D + L + Sbjct: 474 GYADRLEKIVNDESHQLIEEYMLLANECVAKEMKRNRLPCIYRVHEDPDEERLNDLREYM 533 Query: 432 KTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLE 490 T G ++ ++ KL L A P L +++ R A + P H+GL Sbjct: 534 ATWG--IETSDLNNRKDLNKLLETLSAHPQSRLLRTQVLRSLKKACYKSTPDGHYGLCKN 591 Query: 491 AYATWTSPIRKYGDMINHRLLK---AVIKGETATR------------------PQDEITV 529 Y +TSPIR+Y D++ HR+ ++GE A Q E+ Sbjct: 592 DYLHFTSPIRRYSDLVTHRVFNHFLVKVRGEPALNESTLRYNASKASSVADHLSQTEVNS 651 Query: 530 QMAERRRLN-RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 AER + ++ E + R L K T F A I ++ GM + L ++ A Sbjct: 652 VEAERESIKVKLLE------FFERELDKK--KKTAFDAIITEVRNHGMFIELKESNAFGM 703 Query: 589 IPAPFLHAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEV 631 + + A+RD+L +GT I + + Y + +I V + +V Sbjct: 704 V---HISALRDDLYRLNASGTALIGRRKKNAYSLGQMIQVEVHKV 745 >UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured marine microorganism HF4000_APKG3D20 RepID=B3T7C1_9ZZZZ Length = 671 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 122/474 (25%), Positives = 197/474 (41%), Gaps = 34/474 (7%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R+DL +T+D D DDAL L +++ V IAD +A++A S +DK A+ R Sbjct: 189 RKDLRDRFTLTVDPIDARDFDDALSLHPLKGGNVEVGVHIADVSAYVAPESAIDKEARRR 248 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL G +PMLP++LS+ +CSL E R V + T G + + A I S Sbjct: 249 GNSTYLVGEVVPMLPKQLSNGICSLVEAEDRLVKSVLFTFDPKGNVLGH-HVTEAVIRSD 307 Query: 309 AKLVYDQV------SDWLENTGDWQPESE------------------AIAEQVRLLAQIC 344 +L Y+Q SD + PES + +R L Sbjct: 308 KRLTYEQAKLLMDESDLSKVRSAKPPESRYSGKPGTTLSKLPDGKLLKLQSTLRNLWSFA 367 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 E R H + + + ++ ++G ++ +++++EE M+ AN A+ L Sbjct: 368 DELREQRLRHGALDLGGKEVKILVDDRGNPERMMRLVNDESHQLIEEFMLLANETVAKEL 427 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGF 463 R I+ VH DP D L + G + ++ L ++ P + Sbjct: 428 RRLRRPAIHRVHDDPDPEKLDELRSFAAIFG--ISCGDLNHRKAMTALTSKIKNHPISQV 485 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 L ++ R A P H+GL Y +TSPIR+Y D++ HR+++A ++G T Sbjct: 486 LRIKLLRSLRKACYRVSPDGHYGLAKSDYLHFTSPIRRYADLVVHRIIEAQLRGSRTTAH 545 Query: 524 Q----DEITVQMAERRRLNRMAERD-VGDWLYARFLKDKAGTDTR-FAAEIVDISRGGMR 577 ++I ++E R + AER+ V L A + ++ + R A I I R G Sbjct: 546 SRGDLEKIAFHVSETERNSVDAERESVKTKLVAYYARELKENNVRPHEAIITQIGRRGFF 605 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 V L D A F+ L V + E + K+ I V I V Sbjct: 606 VELTDTLAQGFVALRALPRHEGYRVSANETAITARNPKKTLKIGQRIKVMIDRV 659 >UniRef50_D0MFD3 Exoribonuclease II n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFD3_RHOM4 Length = 659 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 108/327 (33%), Positives = 154/327 (47%), Gaps = 36/327 (11%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D T L ID AST ++DDA + L + ++ + +AD ++A LD+ A+ R Sbjct: 263 RTDFTHLPAFHIDDASTREIDDAFTVEPLAEGGWRIGIHLADVPHFVAPDDVLDREARRR 322 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YLP +IPMLP LS DL SLR + +RP L+ +T+ A I D ++ I Sbjct: 323 GLTRYLPTGSIPMLPERLSHDLASLRPDAIRPTLSVVVTVDASEQIRD-VQLVRGQIRVA 381 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 Y+ L +G+ E +AE +++LA++ Q E R + RP+ + + Sbjct: 382 HGFTYETADAVL--SGETPHE---LAEALQVLARLSQTLTEARLARGALLIRRPELKVQV 436 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 L ++ +P A R+V E MI AN AAR + IY V DP + Sbjct: 437 DGDTITLKVI-DPDTPARRMVSEWMILANAEAARWAAENELPMIYRVQ---DPPD----- 487 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLG 488 D E L G R+LD P L SR+R + ST P PH GLG Sbjct: 488 ----------DPE----LQG-----RKLDYDPV-LLASRLRGLRR-TRFSTHPQPHAGLG 526 Query: 489 LEAYATWTSPIRKYGDMINHRLLKAVI 515 LEAY TSPIR+Y D+ R + A + Sbjct: 527 LEAYVQITSPIRRYADLALQRQIVAAL 553 >UniRef50_Q9ZJX9 Ribonuclease R n=18 Tax=Helicobacter RepID=RNR_HELPJ Length = 644 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 117/381 (30%), Positives = 170/381 (44%), Gaps = 38/381 (9%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R + + + F+TID +D DDA+F +K L VA+AD + ++ + S LDK A+IR Sbjct: 211 RINYSHIPFITIDPKDAKDFDDAIFYD---KEKNTLFVAVADVSEFVPKHSSLDKEARIR 267 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 F+ Y P PMLP LS CSL+A E R L + L D N IE + Sbjct: 268 GFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLALVYEIPL--DNL--KNARLSQGVIEVR 323 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLA--QICQRRGEWRHNHALVFKDRPDYRF 366 A Y++++ +L NT Q S Q LL ++ + + R F + + Sbjct: 324 ANCAYEEINHFL-NT---QQSSLGKDLQQSLLGFLEVALKLKKERLKKGFNFNSFEN-KL 378 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL-GFGIYNVHMGFDPANAD 425 L E+G + I E A+ ++EEAM+ AN +AR+L GIY H Sbjct: 379 YLNEEGRIEKIETEKESGAHTLIEEAMLLANQSSARLLDGHFHNRGIYRTHKEPSLEQQK 438 Query: 426 ALAALL--------KTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAE 476 L L K G E L + + RE+ SR I + Q+ A Sbjct: 439 RLYDKLFDYEIVRPKNMGFFPFLEHALKISQEKSIEREV---------SRLIIKSQNLAL 489 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEITVQMAER 534 S HFGLG +Y +TSPIR+Y D+ HRLLK ++ + + + +E AE Sbjct: 490 YSPMQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLEETPELCAEL 549 Query: 535 RRLNRMA---ERDVGDWLYAR 552 L + A ERD +AR Sbjct: 550 NALQKKAALIERDFIKRKFAR 570 >UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 Tax=Caenorhabditis RepID=RRP44_CAEEL Length = 961 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 125/468 (26%), Positives = 200/468 (42%), Gaps = 45/468 (9%) Query: 187 LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 L R DL L ++D D+DDAL K + +D ++ V IAD T ++ G+ +D A Sbjct: 477 LPRVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTHFVRPGTAIDDEAA 536 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 +R T YL I MLP LS +LCSLR E R +C T+++ I+ ++++ + I+ Sbjct: 537 LRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSADIQ-SVKYHKSLIK 595 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 SKA L Y++ + +++ E +A +R L ++ + R + + + RF Sbjct: 596 SKAALTYEKAQEIIDDP----KEQNDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRF 651 Query: 367 ILGEKGEVLDIVAEPRRI-ANRIVEEAMIAANICAA-RVLRDKLGFGIYNVHMGFDPANA 424 + + V E + + + +VEE M+ ANI A ++L + + H + Sbjct: 652 DMDWESRTPKKVMEKQHLDTHSMVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESY 711 Query: 425 DALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF------LDSRIRRFQSFAEIS 478 L + G + E L L R +D + L +R + Sbjct: 712 KPLVEAARHRGFEIIVESGKGLAD--SLNRCVDKKNPMLNRLLRMLTTRCMTQAVYFSAG 769 Query: 479 TEPGP---HFGLGLEAYATWTSPIRKYGDMINHRLLKAVI------KGETATRPQDEITV 529 T P P HFGL Y +TSPIR+Y D+I HRLL A I G +I Sbjct: 770 TVPVPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSGLLNQARCTKICT 829 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R + + A R R+ K K T F M VR +NG F+ Sbjct: 830 NINYRHKQAQYAGRASVQLNVVRYFKGKVETCEGFV----------MGVR--NNGIQVFV 877 Query: 590 PAPFLHAVRDELVCSQENGT--------VQIKGETVYKVTDVIDVTIA 629 P L ++ L S +GT V++ G+ V K + + V I+ Sbjct: 878 PKYGLESI-IVLQTSAASGTTIDVEEMSVKVNGDVVIKELEPVTVRIS 924 >UniRef50_C0QWY3 Exoribonuclease R n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QWY3_BRAHW Length = 580 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 27/461 (5%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L +TIDS S++D+DDA F+ D+ ++ V I+D + +I S LD A+ R Sbjct: 132 RVDLRNLKTITIDSESSKDLDDA-FSIEKTDNNYKVYVHISDVSHFIELDSPLDLEARAR 190 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL M P LS+++ SL NE R L ++ DG I + + I S Sbjct: 191 GNSTYLIDKVYNMFPEVLSNNIISLNENEDRFALTFITDINNDGEILSS-SVCKSVIRSD 249 Query: 309 AKLVYDQVSDWL---ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 KL YD + E+ DW E I + + + ++R E R + F+++ D + Sbjct: 250 RKLSYDYAEKLIKKEESDEDWLLE--LIDNALNIKNVLYKKRKEGR---GVEFENQ-DIK 303 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 +L ++G ++ AE ++ + I+EE M+ AN A L G I+ H D + Sbjct: 304 IVLNDEGMPIEFYAEEKKESMAIIEELMLLANSKVAEKLSSYDGV-IFRYHGLPDEYRFN 362 Query: 426 ALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGP 483 L T G L + ++ + GF + Q L + R + + S Sbjct: 363 NFKILAHTKGYELKENPDKTYDIKGFIGNVK--GKQEENLLIPVLLRSMTPSSYSIVNKS 420 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEITVQMAERRRL---- 537 HFGLGL+ Y +TSPIR+Y D++ HR++K I + I E L Sbjct: 421 HFGLGLDYYTYFTSPIRRYADLLIHRIVKDTILSNNNSINEKLKNICKDSIESLSLLDKT 480 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 ++ AE+ + AR++KD+ G D + A + I+ G+ V + FI A + V Sbjct: 481 SKKAEKYLIQIKAARYMKDRLG-DEYYGA-VSSITPKGIYVEIEGLEIEGFIEATY---V 535 Query: 598 RDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 Q+ +V + Y++ D + V +A +E I Sbjct: 536 GSNYRFYQDMQSVYVDKVKAYELGDRVKVLVASSNVENGKI 576 >UniRef50_C1MNB1 Predicted protein (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MNB1_9CHLO Length = 494 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 112/376 (29%), Positives = 158/376 (42%), Gaps = 30/376 (7%) Query: 173 EAPDGVATEMLD----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 E PD + E + E R D T + +ID + D+DDAL A D L + V I Sbjct: 59 EVPDRASGERWEVPSEERATRRDFTKVRVASIDPPTARDLDDALHATMRDDGVLVVGVHI 118 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD + ++ S LDK A RA + Y +PMLPR L DDLCSL R + + Sbjct: 119 ADVSHFVTPNSALDKEAGRRATSTYFVQKVMPMLPRLLCDDLCSLNPGVERLTFSVEWEM 178 Query: 289 SADGTIEDNIEFFA-ATIESKAKLVYDQVSDW----LENTGDWQPESEAIAEQVRLLAQI 343 + DG + E+F I S AKL Y + G W P A+AE + LL++ Sbjct: 179 TPDGVVLS--EWFGRGVIRSCAKLDYGTAQSVAAADANDPGAWDP--RAVAETIGLLSRA 234 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 + R + + D+ F L G+ A R AN++VEE M+ AN A Sbjct: 235 ARGMRARRFQNGALRLDQSKLSFELDAAGQPSSAAAYVTREANQLVEEFMLLANTTVATF 294 Query: 404 LRDKL-GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLD-GFCKLRRELDAQPT 461 + + H D L GL VDA L LR + P Sbjct: 295 IASAYPDRALLRCHPEPDERKVKQLETFAAERGLRVDASSSGALHRSLTALRA---SNPD 351 Query: 462 GF--------LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 G+ L ++ R+ + E H+ L E Y +TSPIR+Y D++ HR++ A Sbjct: 352 GYEVAKLLATLPMQLARYFCTGKQDEETWGHYALAFERYTHFTSPIRRYPDVVVHRIVAA 411 Query: 514 VI----KGETATRPQD 525 + KG A R D Sbjct: 412 ALDAGFKGRRANRSDD 427 >UniRef50_A5GTC0 Exoribonuclease R/ribonuclease II n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTC0_SYNR3 Length = 655 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 143/322 (44%), Gaps = 41/322 (12%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DLT L +IDSAST+++DDA+ + D L + V IADP W+ G +LD A+ R Sbjct: 255 RRDLTHLSCFSIDSASTQEVDDAIGLERR-DGDLWIWVHIADPHQWLEPGDRLDLEAQRR 313 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL G +PM P ++ D SLR L+ + L ADG I ++ + ++ Sbjct: 314 GSTLYLSGGAMPMFPMAVARDCMSLRPMRRCGALSVGVLLDADGAI-TAVKPCRSWVKVS 372 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 L Y+ D +E PE +AE LA++ +RR WR + ++ + R Sbjct: 373 YGLTYEDADDLIELA---PPEDPDLAE----LAELLKRRTAWREQQGALLMEQAEGRLFR 425 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 E+ + EP +A V EAMI A A + V G NA+A Sbjct: 426 NGAAELALEITEPG-LARSCVSEAMILAGAAMAEWSSQHELAMPFRVQAGSSQDNAEA-- 482 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLD-SRIRRFQSFAEISTEPGPHFGL 487 + P G + ++ RR S + + ++ PH L Sbjct: 483 ----------------------------NQWPQGPVRWAQQRRGLSRSRLQSKAEPHGSL 514 Query: 488 GLEAYATWTSPIRKYGDMINHR 509 GL Y WTSPIR+YGD++ HR Sbjct: 515 GLPMYLQWTSPIRRYGDLLAHR 536 >UniRef50_B8GHD2 Ribonuclease II n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GHD2_METPE Length = 518 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 124/446 (27%), Positives = 200/446 (44%), Gaps = 38/446 (8%) Query: 162 WVTLARHNLEKEAPDGVATEM--LDEGLVRE------DLTALDFVTIDSASTEDMDDALF 213 W + ++ E P V E+ +D L ++ D+ +L + +ID+ + D+D + Sbjct: 21 WNAMGKYGFSPEFPHSVIREVNAMDARLSQKSLMDVRDMRSLLWSSIDNNDSLDLDQIEY 80 Query: 214 AKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSL 273 + PDD++ + +AIAD ++ + D A + Y PMLP LS + SL Sbjct: 81 CERRPDDEILVWIAIADVDRYVRRQLQTDLHAAHNGTSVYTGIETFPMLPDRLSKGISSL 140 Query: 274 RANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES--- 330 + R + T+ DG+ E + A + ++AKL+Y++V DWLE T P++ Sbjct: 141 LPGQDRMAIVIEYTVLPDGSTRHG-EPYRALVTNRAKLIYEEVGDWLEGTRG-VPQTVRD 198 Query: 331 -EAIAEQVRLLAQICQR-RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRI 388 + +Q+RL ++ R +G R ALV + G G V D+V + + A + Sbjct: 199 IPGLDDQIRLQHEVTVRLQGYRREQGALVLNTVEAQPVVKG--GVVRDLVIQRQNQARCL 256 Query: 389 VEEAMIAANICAARVLRDKLG-FGIYNVHMGFD-PANADALAAL-LKTHGLHVDAEEVLT 445 +EE M+AAN L D LG G+ + P N D + + H + Sbjct: 257 IEEFMVAAN----GTLVDYLGRAGVPMIQRVVRVPKNWDGIVVTAARYHQSLPRNPDAKA 312 Query: 446 LDGFCKLRRELDAQPTGF--LDSRIRRFQSFAEI-----STEPGPHFGLGLEAYATWTSP 498 L F L R+ A P F L I + E +EP HF L + Y T+P Sbjct: 313 LSKF--LIRQKKADPERFPDLSLTIVKLLGAGEYMMLAPGSEPFGHFSLAVTDYTHATAP 370 Query: 499 IRKYGDMINHRLLKAVIKGETATRPQDE---ITVQMAERRRLNRMAERDVGDWLYARFLK 555 R+Y D+IN RLLK+V+ E DE ++ + R + ++ ER + + A L Sbjct: 371 NRRYVDIINQRLLKSVLDREPCPYTVDELVSLSTWLTGREKASKKVERFMRKAVAAVLLH 430 Query: 556 DKAGTDTRFAAEIVDISRGGMRVRLV 581 D+ G FAA + S G VRL+ Sbjct: 431 DRIG--EHFAALVTGASEKGTYVRLI 454 >UniRef50_C1QCY4 Exoribonuclease R n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QCY4_9SPIR Length = 581 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 22/464 (4%) Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 ++EG R DL L +TIDS S++D+DDAL + DD ++ + I+D + +I S LD Sbjct: 128 IEEG--RIDLRNLKTITIDSESSKDLDDALSIEKEDDDHYKVYIHISDVSHFIELNSPLD 185 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A+ R + YL M P LS+++ SL N R + + ++ G + + E F Sbjct: 186 IEARSRGNSTYLIDEVYNMFPEILSNNVISLNENADRFAMTLLVHINNKGEVLSS-EVFK 244 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC-QRRGEWRHNHALVFKDR 361 + I S KL YD D ++ + + + ++ + RR E R + F D Sbjct: 245 SVINSDKKLSYDYAEDIIDKKCQAEDWLIVLIDNALIIKNLLYNRRKEGR---GVEF-DN 300 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 + + +L + G ++ AE ++ + IVEE M+ AN A+ L G IY H D Sbjct: 301 QNVQIVLDDDGIPIEFYAEEKKQSMSIVEELMLLANSEIAKKLSKYDGV-IYRYHGVPDE 359 Query: 422 ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEP 481 + L G + + D + R Q L + R + + S Sbjct: 360 YRFNNFKILAHNKGYDLKELPDKSYDIKEFVDRVKGKQEENLLIPVLLRSMTPSSYSIVN 419 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLK-------AVIKGETATRPQDEITVQMAER 534 HFGLGL+ Y +TSPIR+Y D++ HR++K VI+ +D I ++ Sbjct: 420 KSHFGLGLDYYTYFTSPIRRYADLLIHRIVKDTILSGNEVIEESLKNVCKDSID-SLSLL 478 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 + ++ AER AR++KD+ G + + I IS G+ V + FI + ++ Sbjct: 479 DKTSKKAERYTRQIKAARYMKDRLGDE--YYGVISSISPKGIYVEIEGLDIEGFIESIYI 536 Query: 595 HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + Q+ +V I Y++ D + V A+ +E I Sbjct: 537 GS---NYRFYQDMQSVYIDKIKAYELGDRVKVLAAKSNVENGKI 577 >UniRef50_C1F2P6 Rnb family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2P6_ACIC5 Length = 496 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 116/407 (28%), Positives = 189/407 (46%), Gaps = 29/407 (7%) Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 +DL L + +ID+ ++ D+D A+ LPD ++++ V IAD T + S LD+ A+ Sbjct: 60 QDLRHLLWSSIDNDTSRDLDQIEQAERLPDSRVRVRVGIADVTRLVPLNSALDRHAQHNT 119 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 + Y MLP +LS L SL N+ R L T++ +E++ + + A + ++A Sbjct: 120 TSVYTGVATFMMLPEQLSAGLTSLLENQDRSALIIEFTVNEHECVEES-KVYPALVNNRA 178 Query: 310 KLVYDQVSDWLENTGDWQPESEA----IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 +L Y V WLE G Q E + + EQ+RL +I +R R H + D + Sbjct: 179 QLTYRAVGAWLE--GKAQAEGKLANPDLQEQLRLQHEIAERLRRERARHGALNLDMEEST 236 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 ++ E G V+D++ + A+ ++E+ MIAAN AR L I V P + Sbjct: 237 PVI-EDGHVVDLLPVRKNPASELIEDFMIAANGVVARFLSAHKFSSIRRVVR--TPKRWN 293 Query: 426 ALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTGF--LDSRIRRFQSFAEISTE-- 480 + L T G + E + L+ F +R D PT F L + + E E Sbjct: 294 RIVDLAATLGTKLPGEPDAKALNEFLCEQRSKD--PTHFPDLSLAVVKLMGPGEYVAEQP 351 Query: 481 ---PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERR-- 535 P HFGL +E Y T+P R+Y D++ RLLKA+++ + + P E + R Sbjct: 352 NDPPIGHFGLAVEDYTHSTAPNRRYTDLVTQRLLKAILQSQAS--PYSEAALAAIAARCT 409 Query: 536 ---RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 R ERD+ + A + + G +F A + ++ G VR Sbjct: 410 LMGDAERKLERDMHKKIAAVVMSSRIG--QQFNAVVTGVNSYGTFVR 454 >UniRef50_Q8IRJ7 CG16940, isoform C n=5 Tax=melanogaster subgroup RepID=Q8IRJ7_DROME Length = 1044 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 120/451 (26%), Positives = 208/451 (46%), Gaps = 38/451 (8%) Query: 169 NLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 ++ + P ++ E L + R+DL + TID + D+DDA+ + L D++ ++ V I Sbjct: 543 DIYSQPPPPISQEDLRQ---RKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNEYEIGVHI 599 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 +D + ++ E ++LD K R+ + YL I MLP+ L CSL + + + + Sbjct: 600 SDVSHFLIEDNELDNIVKERSTSIYLANEVIHMLPQSLCMR-CSLLPGQDKFAFSVFWRM 658 Query: 289 SADGT-IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-----------EAIAEQ 336 + G ++ EF I S ++ Y+ ++N + E+ + I + Sbjct: 659 NGKGVMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNERFTENDFPTILNGFNPDDIRNR 718 Query: 337 VRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE-KGEVLDIVAEPRRIANRIVEEAMIA 395 V L I + R ++ + + RF+L GE L E +R ANR++EE M+ Sbjct: 719 VLWLHDIASSIRKTRLDNGALTINNAKLRFLLDPITGEPLSFEVEKQREANRLIEEFMLL 778 Query: 396 ANICAARVLRDKLGFGIYNVHMGFDPANADALAAL---LKTHGLHVDAEEVLTL-DGFCK 451 AN AR + D F V P +L AL L G +D L + + Sbjct: 779 ANQAVARFIHD--SFPDIAVLRNHPPPLIKSLKALREKLLALGFELDYSSSKALQESMVR 836 Query: 452 LRRE------LDAQPTGFLDSRIRRFQSF-AEISTEPGP--HFGLGLEAYATWTSPIRKY 502 L E ++A + L + R F +E +EP H+ L + Y +TSPIR+Y Sbjct: 837 LCNEAPNPVAMNACLSQLLMKPMARATYFCSEGKSEPADLWHYALSIPIYTHFTSPIRRY 896 Query: 503 GDMINHRLLKAVIKGETATR--PQDEITV-QMAERRRLN-RMAERDVGDWLYARFLKDKA 558 D++ HRLL A +K T + P D T+ ++A R+ N + A D G+ + R++ +K Sbjct: 897 PDILVHRLLAAALKYCTPPKRTPDDLHTLTKLANERKYNAKKAGEDSGNLYFKRYVHNKQ 956 Query: 559 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 G R A +++I + M V +++G + I Sbjct: 957 GIYMR--AVVIEIFQHMMNVVTLESGHVISI 985 >UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NYF6_PHYIN Length = 1079 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 110/370 (29%), Positives = 163/370 (44%), Gaps = 43/370 (11%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L +ID + +D+DDAL AK LP+ LQ+ V IAD T ++A GS LD+ A R Sbjct: 541 RRDLRDLPVCSIDPPNCKDIDDALHAKLLPNGNLQVGVHIADVTHFVAPGSALDEEAADR 600 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE---DNIEFFAATI 305 + YL + MLP L+ LCSL E + L G + +++F + I Sbjct: 601 GTSTYLVDRRLDMLPGLLTTKLCSLTDVEDHFAFSVLWELQLVGQSDVQVVDVQFCKSLI 660 Query: 306 ESKAKLVYDQVSDWL---ENTGDWQPES-----------------EAIAEQVRLLAQICQ 345 S A L Y Q ++L E G + +S + + ++ L I Sbjct: 661 RSVASLSYQQAQEFLDDPEAGGVYGQDSTLKKKKKGESDEQFERRQLLGSGIKTLNTIAT 720 Query: 346 RRGEWRHNHALVFKDRPDYRFIL-GEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RV 403 R R + P+ RF+L E LD+ R N +VEE M+ ANI A ++ Sbjct: 721 RLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRDTNALVEEFMLLANITVAKKI 780 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHG--LHVDAEEVL--TLDGFCK----LRRE 455 +R F + H D L + K G LHVD + L +LD K +R+ Sbjct: 781 VRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTSKQLQDSLDAADKEAAGSKRK 840 Query: 456 LDAQPTGFLDSRIR----------RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDM 505 + + + +R + S E++ H+GL Y +TSPIR+Y D+ Sbjct: 841 HGDKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHYGLAAPIYTHFTSPIRRYADV 900 Query: 506 INHRLLKAVI 515 + HRLL A I Sbjct: 901 VVHRLLAAAI 910 >UniRef50_A6DIQ3 Exoribonuclease, VacB/RNB family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIQ3_9BACT Length = 668 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 110/391 (28%), Positives = 178/391 (45%), Gaps = 52/391 (13%) Query: 199 TIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFN 258 +ID ST D+DD L + L +D ++ + IAD +A+IA+ S LD A+ RA + YLP Sbjct: 276 SIDDESTSDVDDVLSVEYLENDLFKIGIHIADVSAYIAKASTLDLEAEHRATSIYLPTGT 335 Query: 259 IPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED-NIEFFAATIESKAKLVYDQVS 317 + M P EL+ SL +P L+ TL++DG + +IE + I+ KL Y Sbjct: 336 VNMFPAELATHKASLLPGSPKPALSYYATLTSDGELRSTHIE--RSLIQVSEKLSYRYCD 393 Query: 318 DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDI 377 LE GD + + E + + + +LA + R + +RP+ + + + V+DI Sbjct: 394 GVLE--GDEEAK-EDLKKDLDILANLADELILKRQEKGAITFNRPENKITIVDG--VVDI 448 Query: 378 VAEPRRIANR-IVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGL 436 +R +V E MI AN A+ RD +Y V +D A+ +T+ Sbjct: 449 TEVRAHSKSRALVGEFMILANNLGAQFCRDNEIPALYRVQ-----EKSDEQVAMPETY-- 501 Query: 437 HVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWT 496 P F D+ I+ + + ++ P H GLGL+ Y +T Sbjct: 502 ----------------------DPVSF-DAAIKCMKK-SRMTPYPSDHAGLGLDCYTQFT 537 Query: 497 SPIRKYGDMINHRLLKAVIKGETATRPQDEIT-------VQMAERRRLNRMAERDVGDWL 549 SPIR+Y D++ R L A ++G +DE+ ++ E R + R +E WL Sbjct: 538 SPIRRYSDLMMQRQLIAFLEGRDLVYTEDELLEIKSKAESRLGEVRDVQRQSE---NFWL 594 Query: 550 YARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 Y + K G + A +V+ GG+ V L Sbjct: 595 YTYLEQSKIG--ETYLATVVNHLNGGLLVEL 623 >UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metazoa RepID=RRP44_HUMAN Length = 958 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/387 (25%), Positives = 174/387 (44%), Gaps = 26/387 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 REDL L ++D D+DDAL + L + L++ V IAD + +I G+ LD+ + R Sbjct: 467 REDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESARR 526 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL I M+P LS +LCSL+ + R +C ++ + I +F + I SK Sbjct: 527 GTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKT-KFTKSVINSK 585 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A L Y + +++ ++ I +R L ++ + + R + P+ RF + Sbjct: 586 ASLTYAEAQLRIDSAN----MNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFHM 641 Query: 369 -GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADA 426 E + +D+ + R N +VEE M+ ANI A+ + ++ + H P+N + Sbjct: 642 DSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYEI 701 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQS--------FAEIS 478 L ++ L + + T + + ++ +L++ +R + F Sbjct: 702 LVKAARSRNLEIKTD---TAKSLAESLDQAESPTFPYLNTLLRILATRCMMQAVYFCSGM 758 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DEITVQM 531 H+GL Y +TSPIR+Y D+I HRLL AV G T P+ +I + Sbjct: 759 DNDFHHYGLASPIYTHFTSPIRRYADVIVHRLL-AVAIGADCTYPELTDKHKLADICKNL 817 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKA 558 R ++ + A+R + F K K Sbjct: 818 NFRHKMAQYAQRASVAFHTQLFFKSKG 844 >UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis RepID=A2FUQ4_TRIVA Length = 863 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 101/342 (29%), Positives = 161/342 (47%), Gaps = 14/342 (4%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL +ID D+DDAL K + ++ ++ V IAD + ++ EG+ +D A+ R Sbjct: 402 RMDLRDRCVCSIDPPGCTDIDDALHYKDIDEETCEIGVHIADVSFFVREGTAIDLEARDR 461 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL I MLP LS+DLCS+R R + ++ +++F + I+S+ Sbjct: 462 GTTVYLVEKRIHMLPSLLSEDLCSIRGGIERLAFSVVAIMNKKTAETIDVKFGKSIIKSR 521 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A L Y + + +E+ D +SE +A+ +R L + + + R + + P F L Sbjct: 522 AALSYGRAQEIVEDQND---QSE-LAKGIRGLLALSKIMNKKRMDDGALTLSSPQLHFTL 577 Query: 369 -GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADA 426 E E L N +VEE M+ ANI A+ + + + H A D Sbjct: 578 DSETAEPLSGELYQHLEVNSLVEEFMLYANIEVAKKIYETFKQSAMLRRHESPIAARFDF 637 Query: 427 LAALLKTHGLHVDAEE----VLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEIST--- 479 L LK G+ ++ + V TLDG + ++LD + +R +F + T Sbjct: 638 LNRALKRFGVQLNPDTNKSLVETLDGVGEKVKDLD-NIVRIMTTRCMQFAKYFAAGTQSY 696 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 E H+GL + Y +TSPIR+Y D+I HR L A I + AT Sbjct: 697 ENFRHYGLAMPIYTHFTSPIRRYADLIVHRQLAAAIGYDKAT 738 >UniRef50_UPI00006CBEC4 RNB-like protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBEC4 Length = 1250 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 161/356 (45%), Gaps = 24/356 (6%) Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 E +R DLT TID +D+DDAL K L DD ++ V IAD + ++ + LD Sbjct: 741 EKNIRWDLTKEIICTIDPHDAKDLDDALSIKYLHDDIYEIGVHIADVSHFVQPNTSLDDD 800 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI--EDNIEFFA 302 A++R + YL IPMLPR L ++LCSL N R + +G + + I Sbjct: 801 ARLRTTSVYLVHRVIPMLPRLLCENLCSLNPNVERLAFTVFFQMKENGEVLWDGPIRIGK 860 Query: 303 ATIESKAKLVYDQVSDWLE------------NTGDWQPESEAIAEQVRLLAQICQRRGEW 350 + I+S K YD V +E N +S+ + + + LLA++ R E Sbjct: 861 SVIKSCNKFSYDTVQMMIEKKIKSPGELPEHNIPQQGVDSQKMFDDILLLAKLGMNRRES 920 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN-ICAARVLRDKLG 409 R ++ + RF L EK +D E R+ A +VEE M+ AN I A +++ Sbjct: 921 RFKGGVLSIESVKKRFKLNEKLWPVDFTLEERKDAMFVVEEFMLLANQIVAKEMVKQCKS 980 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGF---CKLRRELDAQPTGFLDS 466 + H L + K G +D + ++ K +L + FL Sbjct: 981 LAVLRQHCYPSDIKQKQLNVIAKKFGHQIDFSSLQAINQSIEDIKKDDKLSFEKKLFLKK 1040 Query: 467 RIRRF--QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516 ++ Q+ ++ + P HF L + Y +TSPIR+Y D++ HR++ ++++ Sbjct: 1041 QMFLVLEQALYFVADQLPPSEWKHFALNFDVYTHFTSPIRRYPDLLVHRVMYSILQ 1096 >UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_HUMAN Length = 796 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 100/387 (25%), Positives = 174/387 (44%), Gaps = 26/387 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 REDL L ++D D+DDAL + L + L++ V IAD + +I G+ LD+ + R Sbjct: 305 REDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESARR 364 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL I M+P LS +LCSL+ + R +C ++ + I +F + I SK Sbjct: 365 GTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKT-KFTKSVINSK 423 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A L Y + +++ ++ I +R L ++ + + R + P+ RF + Sbjct: 424 ASLTYAEAQLRIDSAN----MNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFHM 479 Query: 369 -GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADA 426 E + +D+ + R N +VEE M+ ANI A+ + ++ + H P+N + Sbjct: 480 DSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYEI 539 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQS--------FAEIS 478 L ++ L + + T + + ++ +L++ +R + F Sbjct: 540 LVKAARSRNLEIKTD---TAKSLAESLDQAESPTFPYLNTLLRILATRCMMQAVYFCSGM 596 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DEITVQM 531 H+GL Y +TSPIR+Y D+I HRLL AV G T P+ +I + Sbjct: 597 DNDFHHYGLASPIYTHFTSPIRRYADVIVHRLL-AVAIGADCTYPELTDKHKLADICKNL 655 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKA 558 R ++ + A+R + F K K Sbjct: 656 NFRHKMAQYAQRASVAFHTQLFFKSKG 682 >UniRef50_Q09568 Uncharacterized ribonuclease F48E8.6 n=3 Tax=Caenorhabditis RepID=YR86_CAEEL Length = 817 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 111/409 (27%), Positives = 180/409 (44%), Gaps = 74/409 (18%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPD------DKLQLIVAIADPTAWIAEGSKLD 242 R D + TID + D+DDAL AK + D L++ V IAD T ++ EG++LD Sbjct: 302 RRDFRSDIVFTIDPKTARDLDDALHAKHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELD 361 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 K A R + YL IPMLPR L + LCSL R + +S + + D + F Sbjct: 362 KWASERGNSTYLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVFKMSYEAELYD-VWFGR 420 Query: 303 ATIESKAKLVYDQVSDWLEN-----TGDWQPESE------AIAEQVRLLAQICQRRGEWR 351 + I S+ KL Y+ D++EN T D P+ I E+ +L +I Q + R Sbjct: 421 SVIRSRVKLAYEHAQDFIENPEKDFTCDELPDISDGNTPFEIKEKTLMLHRIAQVLRQKR 480 Query: 352 HNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 + + + P +F L E + + + +N++VEE M+ AN+ A+ + + Sbjct: 481 EDSGALRIELPRLKFALDEDKKPQGVSIYEIKDSNKLVEEFMLLANMEVAKKIAENF--- 537 Query: 412 IYNVHMGFDPANADALAALLKTH-----GLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 466 P + ALL+ H + D E GF LD + +G L + Sbjct: 538 ---------PEH-----ALLRNHPPPKEKMIKDVAEQCARIGF-----PLDGRTSGLLST 578 Query: 467 RIRRFQS-----------FAEISTEPGP----------------HFGLGLEAYATWTSPI 499 +R++Q + ++ +P HF L ++ Y +TSPI Sbjct: 579 SLRKYQGKSRLDMCIRQVISSLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSPI 638 Query: 500 RKYGDMINHRLLKAVI-KGETATRPQDEITVQMAERRRLNRMAERDVGD 547 R+Y D+I HR L A + E + R +EI ++ R ++A ++ D Sbjct: 639 RRYPDVIVHRQLAAALGYNERSERVPEEIQ-EICTRCNDTKLASKEASD 686 >UniRef50_A0LG74 Exoribonuclease II n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG74_SYNFM Length = 680 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 153/353 (43%), Gaps = 70/353 (19%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL LD +T+DSA T D DDAL +AL ++ ++ + IAD ++ +G LD+ A+ R Sbjct: 284 RRDLRHLDCLTVDSALTRDYDDALSFRALDGNRFEVGIHIADAAEFVLKGDVLDREAERR 343 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 A + YLP I MLP LS+DLCSL+A E RP L+ + DGTI + E ++TI Sbjct: 344 ATSIYLPDARISMLPVPLSEDLCSLKAGEDRPALSFLFVVHGDGTIAGS-EIVSSTIRVA 402 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRL------LAQICQRRGEWRHNHALVFKDRP 362 +L Y E + E++RL L+ + + R + P Sbjct: 403 EQLTY-----------------EEVNERIRLDDSPAALSALAMKLRNARLDRGASILPLP 445 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + + + G + E + +V E MIAAN AA L ++ Sbjct: 446 EIQVYVNSAGMIQVSRYEKETPSQIMVSEWMIAANAAAAAFLAER--------------- 490 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS--------RIRRFQSF 474 D V G CK Q T F S R RR + Sbjct: 491 ----------------DLPSVFRGQGECK-------QETDFTQSEHELFRIYRQRRLYAR 527 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI 527 AE+ T H L LE Y T TSPIR+Y D++ R +K ++G +DE+ Sbjct: 528 AELDTRSKQHCSLALEHYTTVTSPIRRYTDLVVQRQIKQALQGGPPLYDEDEL 580 >UniRef50_A5GLA4 Exoribonuclease R/ribonuclease II n=2 Tax=Synechococcus RepID=A5GLA4_SYNPW Length = 649 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 94/342 (27%), Positives = 155/342 (45%), Gaps = 38/342 (11%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DLT L VTID A T+D+DDAL + L +D L++ + IADP+ I GS LD A+ R Sbjct: 245 RRDLTHLACVTIDDAETKDIDDALGLERLANDHLRIWIHIADPSRLITAGSPLDLEARRR 304 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL +PM P +LS ++ SL+A + P + + L A G + + + + + Sbjct: 305 GSSLYLSRGLLPMFPSKLSSEVFSLKAGQRNPAWSTWVDLDASGDVTAS-GLCRSWVTPR 363 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 +L YD + + D+ P EA + L + R +WR + D P+ R I Sbjct: 364 YRLTYDDADELI----DFAPPEEA---DLSDLHDLLTTRRQWRVQRGALLMDLPEGR-IR 415 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 G+ + EP + + E ++ ++ A++ + +++ + F L Sbjct: 416 CRDGQPTIEITEPSPSRDMVAEAMILCGSVAASQGIE-------HDLPLPFRSQLPAELP 468 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLG 488 + + GL DG + + I+R S + T P HF LG Sbjct: 469 SAAQLEGLG---------DGAVRF-------------AAIKRCLSRGLMGTTPAAHFSLG 506 Query: 489 LEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQ 530 L AYA TSPIR+Y D++ R A++ P + ++Q Sbjct: 507 LSAYAQATSPIRRYSDLVVQRQFAALLYPHANEEPLNTESLQ 548 >UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFY5_9PLAN Length = 758 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 128/468 (27%), Positives = 205/468 (43%), Gaps = 34/468 (7%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DLT VTID A D DDA+ L V IAD ++ EGS LD+ AK R Sbjct: 255 RRDLTRETIVTIDPADARDFDDAISLTRDEKGHWLLGVHIADVAHFVKEGSLLDREAKHR 314 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLPG IPMLP +S+ L SL+ +VR + + + +G I + EF I+ K Sbjct: 315 GTSVYLPGRVIPMLPEIISNGLASLQEGQVRFTKSAFIEFTPEG-IPVHTEFANTAIKVK 373 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVR-LLAQICQ----RRGEWRHNHALVFKDRPD 363 + Y+QV ++ D E + ++ +VR LL + Q RG AL + Sbjct: 374 QRFAYEQVLPIVQERDD---EGKHVSAEVRELLKNMYQLAMMLRGRRFSAGALELH-LAE 429 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + +K V V +++I+EE M+AANI A D+ + VH + Sbjct: 430 VKLTFDDKHRVTGAVEREHDESHQIIEEFMLAANISIAEAFHDRGLRFLRRVHPSPEMPR 489 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPG 482 A A G ++ +V + KL E+ P ++ + R AE + + Sbjct: 490 QLAFAEFANALGFTLN--KVQSRKDLQKLINEVHGTPVEQAINYALLRSLKQAEYTDKEL 547 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI----KGETATRPQD--EITVQMAERRR 536 H+ L ++ Y +TSPIR+Y D+ HR++ ++ KG+ + PQ ++ +++ R R Sbjct: 548 GHYALAVDHYCHFTSPIRRYPDLTIHRMIDEILERPDKGKGQS-PQGLRQLGHELSLRER 606 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP-FLH 595 AER++ ++ D I + GM R D +P LH Sbjct: 607 RAESAERELTKVKLLTWMIDN--NIRTLETMITGVETFGMFCRGTD------VPVEGLLH 658 Query: 596 AVR--DELVCSQENGTVQIKGETV---YKVTDVIDVTIAEVRMETRSI 638 R QE I GE Y+V D++ V + ++ ++ R + Sbjct: 659 ISRLGKHDYFHQEVPKFSIVGERTGQEYRVGDLLTVEVEKIDLDRREL 706 >UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHG7_9BACT Length = 763 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 143/599 (23%), Positives = 256/599 (42%), Gaps = 44/599 (7%) Query: 8 LAQLKQQLHSQTPRA-EGVVKAT--EKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAV 63 + + KQ + P+ +G+ AT +GF + + +K Y++ + H D I+A Sbjct: 66 MPKAKQPSPTPNPKLLQGIFDATPLSRGFSYAFIRTPEKDYYVDAEDILNAFHND-IVAF 124 Query: 64 --IHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHP------LLKDAIPCRAA 115 + + ++SA ++V+ +FVG++ +N + +P + D P + Sbjct: 125 EPKYRKGHQDSAIIRKVVKRSTEQFVGELIRRNGFSTFICSNPKVFRWFFVSD--PAQGE 182 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 G K +W +M + P+ ++ + + + V + ++NL E P Sbjct: 183 NGDKVVLKVTNWGNPQMGKVPV-------GKVIEILGKSGEPEVELLAVIRQYNLPLEFP 235 Query: 176 DGVATE--MLDEGLV------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + V E +L + R DL L TID + +D DDA+ A +L V Sbjct: 236 EDVIAEANLLSAEIKPEDYRNRRDLRNLYSFTIDPITAKDFDDAI-AVEKTSKGWRLYVH 294 Query: 228 IADPTAWIA-EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD +++ EG+ +A+K R + Y P IPMLP LS+ +CSLR E + L + Sbjct: 295 IADVAHYLSVEGAIFQEASK-RGNSFYFPKRVIPMLPERLSNLICSLRPEEEKLCLTVQT 353 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE-NTGDWQPESEAIAEQVRLLAQICQ 345 G I + + + + I S+++L YD+V + D + I + R L+++ Sbjct: 354 DFDRKGQIIEQ-QIYESVICSQSRLNYDEVDELFAGKKTDIPIPLQDILLEARALSRLLT 412 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 E R N +F D P+ + E G + + +++I+E M+ AN A L Sbjct: 413 ---EKRMNAGYIFFDLPEIEYEYDENGFLKCLTLAEETESHKIIENFMLVANEFVATRLS 469 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLD 465 IY +H D + L LL +G+ E L L + D Sbjct: 470 QTAPATIYRIHNDPDFNKLERLIELLSYYGVKWVMYENLNKSIQYLLNSFPNEAYHKVFD 529 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---KGETATR 522 + R A STE HF L +E Y +TSPIR+ D++ H L K + + T Sbjct: 530 RILLRSMKKARYSTEHIHHFALAMENYTHFTSPIRRLCDLVVHYLCKTWLCHTSNQKFTP 589 Query: 523 PQDEITVQMAERRRLNR-MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 Q + ++A + + +ERD+ +++K G + ++ ++ G+ V+L Sbjct: 590 SQLKHFAEVASEQEIQADQSERDIEMVYSLALMREKEG--ELYEGMVISVNSRGLIVQL 646 >UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XYF0_BRAFL Length = 813 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 111/397 (27%), Positives = 171/397 (43%), Gaps = 32/397 (8%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL TID A+ D+DDA+ L D ++ V IAD + +I E + LD A R Sbjct: 330 RRDLRLDCIFTIDPATARDLDDAVSCNKLDDGTYEVGVHIADVSYFIQENTALDLTAACR 389 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT-IES 307 A + YL IPMLPR L + LCSL E R + L+ G + D E+F T I S Sbjct: 390 ATSVYLVQKVIPMLPRLLCEQLCSLNPAEERLAFSVIWKLTETGDVLD--EWFGRTIIRS 447 Query: 308 KAKLVYDQVSDWLENTGDWQPESEA------------IAEQVRLLAQICQRRGEWRHNHA 355 KL YD ++N D P E +AE+V L +I Q + R + Sbjct: 448 CVKLSYDHAQSIIDNP-DQLPTQEQLPTISDGHSIQDVAERVLNLYKISQNLRKKRFDGG 506 Query: 356 LVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIY 413 + D+P F L E G R +NR++EE M+ AN+ A + + + Sbjct: 507 ALRLDQPKLAFSLDPESGLPNGCSVYQIRDSNRLIEEFMLLANMAVAHKIHESFPERAVL 566 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCK--LRRELDAQPTGFLDSRI--- 468 H P + L T G+++D L + +++ Q T ++ + + Sbjct: 567 RRHPPPQPKMVEDLVKTCGTMGINLDISSSGALHQSIARYIGDDVETQATFYILTAMASK 626 Query: 469 -----RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 + F S H+ L + Y +TSPIR+Y D++ HRLL A + A Sbjct: 627 PMQLAKYFCSGCLPEEGMYHHYALNVPLYTHFTSPIRRYADVLVHRLLGACLGCGPAVEK 686 Query: 524 QDE----ITVQMAERRRLNRMAERDVGDWLYARFLKD 556 E +T +R+ ++ + D +A F+K+ Sbjct: 687 SAEELQGMTDHCNDRKDASKRVQEASADMFFASFVKE 723 >UniRef50_Q1NRA8 Exoribonuclease II n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRA8_9DELT Length = 663 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 123/410 (30%), Positives = 182/410 (44%), Gaps = 60/410 (14%) Query: 179 ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 A E+L EG R DL L +TID AST D+DDAL + Q+ + IAD ++ G Sbjct: 265 AAELLAEG--RRDLRQLPVMTIDGASTRDLDDALHIQR-QGANFQVGIHIADVAHFVKPG 321 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S L AA R + Y P +PMLP LS++LCSL A RP ++ +T++ G I D+ Sbjct: 322 SILFNAAVRRVTSLYFPEGQVPMLPPRLSENLCSLLAGRPRPAMSFLLTITPQGEIVDS- 380 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 A +E K +L YDQV + L GD + + L+Q +RR R + Sbjct: 381 SIEATVVEVKKRLDYDQVEELLA-AGDRD------LQDLLGLSQTLRRR---RLEAGALL 430 Query: 359 KDRPDYRFILGEKGE---VLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 PD L E+G L+ V P R+ +V E M+ AN+ AA + + G++ Sbjct: 431 LPIPDVNIKLDEQGRPAVSLEDVDLPARL---LVSELMVLANMQAAEYVAQQQVAGLFRS 487 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFA 475 + H V E D F R+ +P L Sbjct: 488 QD--------------EPHQRLVQGYEE---DIFTIWRQRKQLKPGQLL----------- 519 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQ--DEITVQM 531 T+PG H G+G +Y T TSPIR+ D++ L A+ +G + P+ D I Sbjct: 520 ---TQPGRHSGVGAASYTTITSPIRRLLDLVMQHQLYALKARQGARFSEPELLDLIAAIS 576 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 A + R N+++ WL ++L K G + + ++ G RV LV Sbjct: 577 ATQVRANQVSRERSRYWLL-KYLAAKQGK----TVDALVVAAGPRRVALV 621 >UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23DE7_TETTH Length = 946 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 106/408 (25%), Positives = 173/408 (42%), Gaps = 29/408 (7%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL ++ +ID +D+DDAL +LP+ ++ V IAD + ++ + +DK A+ R Sbjct: 476 RVDLRGINVCSIDPPGCKDIDDALHCISLPNGNFEVGVHIADVSYFVRPDTAIDKEAQNR 535 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL MLP+ L++ LCSL+ + R + + D I + + + I S Sbjct: 536 CTTVYLVDRRTDMLPKLLTETLCSLKDDGDRLAFSVVWVMDKDANIIET-RYHKSIIRSV 594 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A L Y + +++ D +++I L ++ Q+R E N AL Sbjct: 595 ASLNYGKAQSMIDDVNDNSELTKSIRNLNMLAKKLKQKRIE---NGALSLASTQVKFTFD 651 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRDKLGFGIYNVHMGFDPANADAL 427 E +D+ N ++EE M+ N+ A +++ I H P L Sbjct: 652 DETHNPVDVQFYQMYETNSLIEEFMLLGNVAVAEKIVSHFPSISILRQHSQPKPKQIKEL 711 Query: 428 AALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIR----------RFQSFAE 476 + +L+ G ++D L D K+ R D F + +R + A+ Sbjct: 712 SQILQKIGFNLDYSSNRNLADSLDKVNRPNDH----FFNKLVRIMTTRSMNEATYFCTAD 767 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE------TATRPQDEITVQ 530 H+GL Y +TSPIR+Y D++ HRLL A I E + +I + Sbjct: 768 ADYPEFYHYGLAAPLYTHFTSPIRRYADVLVHRLLAAAIDIEAIPAYMSNKLKMAKICEK 827 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 M R R+ R A R D+ F KDK + A + IS+ G V Sbjct: 828 MNMRNRMARFASRSSSDYNTYLFFKDKQIEE---VAMVSSISKTGATV 872 >UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes scapularis RepID=B7QBQ1_IXOSC Length = 956 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 109/386 (28%), Positives = 170/386 (44%), Gaps = 24/386 (6%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 REDL L ++D D+DDAL + LP+ ++ V IAD + ++ G+ LDK A R Sbjct: 462 REDLRHLCICSVDPPGCTDIDDALHCRELPNGNYEVGVHIADVSYFVRPGTALDKEAANR 521 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL I M+P LS +LCSLR E R + +S + + + +F + I+S+ Sbjct: 522 GTTVYLVDQRIDMVPELLSANLCSLRGGEERLAFSAIWEVSPEAEVL-HTKFHKSIIKSR 580 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A L Y + +++T E + LA+I + + N AL + Sbjct: 581 AALTYAEAQARIDDTS-LNDELTLGLRGLNRLAKIL--KAKRIANGALTLASSEVRFHVD 637 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR-VLRDKLGFGIYNVHMGFDPANADAL 427 E + +D+ + N +VEE M+ AN AR + ++ + H PAN + L Sbjct: 638 SETHDPIDVQTKQLLETNSMVEEFMLLANASVARHIFQEFPECALLRRHPAPAPANLEPL 697 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAE--------IS 478 + G V+ E L L L R +D QP + R+ + A ++ Sbjct: 698 VKAGHSKGFVVEVESGLRLAE--SLDRAVDPEQPYFNVMLRMVATRCMARALYFCSGCVA 755 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DEITVQM 531 E H+GL + Y +TSPIR+Y D++ HRLL V G AT P E+ + Sbjct: 756 PEDFDHYGLAMPFYTHFTSPIRRYSDLMVHRLL-GVCVGAEATYPDLVHKNKCQELCNNL 814 Query: 532 AERRRLNRMAERDVGDWLYARFLKDK 557 R + + A R F +DK Sbjct: 815 NYRHNMAQYAGRSSVALYTQAFFRDK 840 >UniRef50_UPI0001C32480 Exoribonuclease II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32480 Length = 601 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 130/463 (28%), Positives = 192/463 (41%), Gaps = 33/463 (7%) Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L TID A+ +D DDA+ A+ D+ ++ V IAD +A++ G +D+ A R Sbjct: 135 RRDLRDLTTFTIDPATAKDFDDAISAEQTGPDRWRIWVHIADVSAYVRPGDLIDREAYRR 194 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + Y+P PMLP LS+ CSLR E R LA L G F+ +TI S Sbjct: 195 GTSVYVPAKVEPMLPEGLSNVACSLRPGEDR--LAVTAELELHGPSVARASFYRSTIRSD 252 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 +L YD+V +P E A+ + R + + + F Sbjct: 253 ERLDYDRVDRIFAGA---EPALEPWAQPLAAARGAAAALAARRDAQGALAIESVEPEFAF 309 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 +G V + ++R++E MI AN AR+L ++ +Y VH D + A+ L Sbjct: 310 DREGHVTAAAGVVQTESHRLIEHLMILANEQVARLLSERKVPTLYRVHERPDGSAAERLI 369 Query: 429 ALLKTHGL-----------HVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI 477 A L + G+ AE + + L+S + R A Sbjct: 370 AQLASLGVPTPPLPEQPTPQQGAEAIAVASHLVAAYVRRSRRGGIGLNSLVLRALKQARY 429 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHR-LLKAVIKGETATRPQ--------DEIT 528 H GLGL Y +TSPIR+Y D++ HR LL AV GE A PQ D + Sbjct: 430 DPRNLGHTGLGLTHYCHFTSPIRRYPDLVCHRALLSAVGAGEDA--PQASRLPGAGDWAS 487 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + + ++ R A+ +L R L + G D F E+ + G V D G Sbjct: 488 ARERDAMQVERAADDVARCFLLERTLFE-TGFDQDFDGEVTGVIGAGAFVAFGD-GYEGM 545 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 +P LH EL E GT+ + G K + D +V Sbjct: 546 LPVRKLHGEWWEL---NEEGTI-LNGTRTGKAIRIGDAVRVQV 584 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria R... 830 0.0 UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria R... 710 0.0 UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria R... 660 0.0 UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_V... 657 0.0 UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans... 649 0.0 UniRef50_C9R3S6 Exoribonuclease II n=7 Tax=Gammaproteobacteria R... 648 0.0 UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_... 645 0.0 UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR4... 643 0.0 UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU 642 0.0 UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID... 635 e-180 UniRef50_Q65SI5 Exoribonuclease 2 n=36 Tax=Gammaproteobacteria R... 635 e-180 UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K40... 630 e-179 UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5... 628 e-178 UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_A... 627 e-178 UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID... 625 e-177 UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms Re... 623 e-177 UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1... 622 e-176 UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RN... 621 e-176 UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ... 620 e-176 UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentan... 619 e-175 UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=... 616 e-175 UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms Re... 616 e-174 UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_N... 615 e-174 UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE 615 e-174 UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR... 615 e-174 UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteri... 613 e-174 UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_... 613 e-174 UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica AT... 612 e-173 UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B... 611 e-173 UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V... 611 e-173 UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR 610 e-173 UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX... 610 e-173 UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID... 610 e-173 UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepI... 610 e-173 UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingell... 608 e-172 UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH 606 e-172 UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1... 606 e-172 UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 R... 606 e-172 UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6... 605 e-171 UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 604 e-171 UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis ... 603 e-170 UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacteri... 602 e-170 UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis A... 601 e-170 UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia A... 601 e-170 UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM... 600 e-170 UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolit... 596 e-169 UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR... 596 e-169 UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbi... 596 e-169 UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 595 e-168 UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostri... 593 e-168 UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_... 593 e-168 UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=... 593 e-167 UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS... 589 e-166 UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z97... 588 e-166 UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RH... 588 e-166 UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni Re... 588 e-166 UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN 588 e-166 UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM... 587 e-166 UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group ... 586 e-166 UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13... 586 e-165 UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus E... 586 e-165 UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ... 584 e-165 UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candida... 584 e-165 UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_A... 584 e-165 UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 ... 583 e-165 UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yello... 582 e-164 UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M94... 581 e-164 UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13... 581 e-164 UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wol... 580 e-164 UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KP... 579 e-164 UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BN... 579 e-163 UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DS... 577 e-163 UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdema... 577 e-163 UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID... 576 e-163 UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_... 573 e-162 UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazo... 573 e-161 UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 606... 572 e-161 UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus... 568 e-160 UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37... 568 e-160 UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM ... 567 e-160 UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_... 567 e-160 UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9... 567 e-160 UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=... 565 e-159 UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 565 e-159 UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimo... 564 e-159 UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9... 563 e-158 UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DS... 563 e-158 UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU 561 e-158 UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q... 561 e-158 UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6... 561 e-158 UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 560 e-158 UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deino... 559 e-158 UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria ... 559 e-157 UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bactero... 558 e-157 UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaeroc... 558 e-157 UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter ver... 557 e-157 UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1... 556 e-157 UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacte... 555 e-156 UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 154... 554 e-156 UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J... 553 e-155 UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum... 552 e-155 UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP 550 e-155 UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QP... 548 e-154 UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 ... 547 e-154 UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea p... 547 e-154 UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=... 546 e-154 UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=... 546 e-154 UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCT... 544 e-153 UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7... 544 e-153 UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 544 e-153 UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID... 543 e-153 UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovoru... 543 e-153 UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidan... 542 e-152 UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kue... 540 e-152 UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC ... 535 e-150 UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens ... 535 e-150 UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0L... 535 e-150 UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=... 535 e-150 UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerof... 533 e-150 UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H... 532 e-149 UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferroox... 532 e-149 UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 Re... 531 e-149 UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ell... 529 e-148 UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyr... 527 e-148 UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiropla... 525 e-147 UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacte... 524 e-147 UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus ... 518 e-145 UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobac... 518 e-145 UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID... 517 e-145 UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n... 516 e-145 UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepI... 516 e-144 UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n... 516 e-144 UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=... 515 e-144 UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella ... 514 e-144 UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n... 512 e-143 UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 87... 511 e-143 UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ri... 511 e-143 UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiacea... 508 e-142 UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostri... 506 e-141 UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus ... 506 e-141 UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma syn... 506 e-141 UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellular... 502 e-140 UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax... 501 e-140 UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured mar... 500 e-140 UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostri... 500 e-140 UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacter... 499 e-139 UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azoba... 499 e-139 UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ... 498 e-139 UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_... 495 e-138 UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 70012... 495 e-138 UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopath... 494 e-138 UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyo... 492 e-137 UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR... 490 e-137 UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 498... 490 e-137 UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloac... 488 e-136 UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatu... 485 e-135 UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensi... 485 e-135 UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n... 485 e-135 UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfurica... 485 e-135 UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0... 484 e-135 UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_... 483 e-135 UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma... 483 e-135 UniRef50_C5BR14 Exoribonuclease II n=1 Tax=Teredinibacter turner... 482 e-134 UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacte... 482 e-134 UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotr... 480 e-134 UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n... 479 e-133 UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica Re... 479 e-133 UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collins... 478 e-133 UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n... 478 e-133 UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribo... 476 e-132 UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis ME... 475 e-132 UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8... 474 e-132 UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID... 474 e-132 UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE... 471 e-131 UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID... 471 e-131 UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA 470 e-131 UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma con... 470 e-131 UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases ... 469 e-130 UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q2... 468 e-130 UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfo... 467 e-130 UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB... 462 e-128 UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuc... 462 e-128 UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organ... 460 e-128 UniRef50_A0Z0P5 Exoribonuclease R n=6 Tax=Bacteria RepID=A0Z0P5_... 459 e-127 UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobi... 456 e-126 UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY... 455 e-126 UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ... 455 e-126 UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n... 453 e-125 UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepI... 448 e-124 UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria Rep... 448 e-124 UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n... 446 e-123 UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam ... 446 e-123 UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 445 e-123 UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n... 443 e-123 UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria R... 442 e-122 UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN 441 e-122 UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma ... 441 e-122 UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_S... 438 e-121 UniRef50_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 994... 435 e-120 UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group Re... 433 e-120 UniRef50_Q6SG71 RNB-like family protein n=4 Tax=Bacteria RepID=Q... 432 e-119 UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera ara... 432 e-119 UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoo... 429 e-118 UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes sc... 427 e-118 UniRef50_B0EIJ5 Exosome complex exonuclease RRP44, putative n=2 ... 421 e-116 UniRef50_A0CC06 Chromosome undetermined scaffold_166, whole geno... 420 e-115 UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metaz... 419 e-115 UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila... 419 e-115 UniRef50_B6G9G5 Putative uncharacterized protein n=1 Tax=Collins... 418 e-115 UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota R... 417 e-115 UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_... 417 e-115 UniRef50_A9EZ35 Ribonuclease R n=2 Tax=Myxococcales RepID=A9EZ35... 417 e-114 UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 T... 415 e-114 UniRef50_C0QWY3 Exoribonuclease R n=1 Tax=Brachyspira hyodysente... 413 e-113 UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilag... 411 e-113 UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic contro... 410 e-112 UniRef50_Q7MQZ6 RIBONUCLEASE n=1 Tax=Wolinella succinogenes RepI... 409 e-112 UniRef50_B9KCI4 Ribonuclease R n=9 Tax=Epsilonproteobacteria Rep... 408 e-112 UniRef50_Q54BH9 Putative uncharacterized protein n=1 Tax=Dictyos... 408 e-112 UniRef50_UPI0001C32480 Exoribonuclease II n=1 Tax=Conexibacter w... 408 e-112 UniRef50_P37202 Exosome complex exonuclease dis3 n=4 Tax=Ascomyc... 408 e-112 UniRef50_Q0CT74 Mitotic control protein dis3 n=35 Tax=Saccharomy... 408 e-112 UniRef50_A6Q7D2 Ribonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepI... 407 e-112 UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosac... 406 e-111 UniRef50_D1HK82 Whole genome shotgun sequence of line PN40024, s... 406 e-111 UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 ... 406 e-111 UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariop... 403 e-111 UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agarica... 403 e-110 UniRef50_C1QCY4 Exoribonuclease R n=1 Tax=Brachyspira murdochii ... 403 e-110 UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosacch... 400 e-110 UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9... 399 e-109 UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosacch... 399 e-109 UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis R... 398 e-109 UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegle... 396 e-109 UniRef50_A1VYZ1 RNB-like protein n=15 Tax=Campylobacter RepID=A1... 396 e-108 UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clu... 396 e-108 UniRef50_C3XLE6 Ribonuclease n=1 Tax=Helicobacter winghamensis A... 395 e-108 UniRef50_C5KND9 Exosome complex exonuclease rrp44, putative n=3 ... 395 e-108 UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 ... 395 e-108 UniRef50_UPI000180BAF4 PREDICTED: similar to DIS3 mitotic contro... 393 e-108 UniRef50_A7AWK8 RNB-like domain containing protein n=1 Tax=Babes... 393 e-108 UniRef50_B0D4A4 Predicted protein n=9 Tax=Dikarya RepID=B0D4A4_L... 391 e-107 UniRef50_C9RQ37 VacB and RNase II family 3'-5' exoribonuclease n... 391 e-107 UniRef50_Q30T59 RNAse R n=2 Tax=Campylobacterales RepID=Q30T59_S... 391 e-107 UniRef50_Q08162 Exosome complex exonuclease DIS3 n=24 Tax=Saccha... 391 e-107 UniRef50_Q46363 Acetazolamide conferring resistance protein zam ... 391 e-107 UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 ... 390 e-106 UniRef50_Q5MZZ6 Protein conferring resistance to acetazolamide Z... 390 e-106 UniRef50_UPI00015B4E71 PREDICTED: similar to ribonuclease n=1 Ta... 388 e-106 UniRef50_A7S1B6 Predicted protein (Fragment) n=1 Tax=Nematostell... 387 e-106 Sequences not found previously or not previously below threshold: >UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria RepID=RNB_ENT38 Length = 644 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 555/643 (86%), Positives = 602/643 (93%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 M QDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDR+ Sbjct: 1 MLQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 AVIH++K+RE+AEPEEL+EPFLTRFVGKV K+DRL+IVPDHPLLKDAIPCRA R H Sbjct: 61 TAVIHTQKDRETAEPEELIEPFLTRFVGKVHKKDDRLSIVPDHPLLKDAIPCRADRNCEH 120 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 +FKEGDWAVA+MRRHPLKGDR FYA+LT +IT+ DDHFVPWWVTLARHNLEKEAP+GVAT Sbjct: 121 DFKEGDWAVAQMRRHPLKGDRGFYADLTHFITYSDDHFVPWWVTLARHNLEKEAPNGVAT 180 Query: 181 EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 EMLDEGL R DLTAL+FVTIDSAST+DMDDAL+ + D KL L VAIADPTAWIAEGSK Sbjct: 181 EMLDEGLERRDLTALNFVTIDSASTQDMDDALYVEEGADGKLHLTVAIADPTAWIAEGSK 240 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD +AK+RAFTNYLPGFNIPMLPRELSDDLCSLR N++RPVLACRMT++ADGTIED+IEF Sbjct: 241 LDDSAKVRAFTNYLPGFNIPMLPRELSDDLCSLRPNQIRPVLACRMTIAADGTIEDDIEF 300 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 FAATIESKAKL YD VS+WLE G+W+PESEAIA+Q+ LL ++C RGEWR HALVFKD Sbjct: 301 FAATIESKAKLAYDDVSNWLEGAGNWKPESEAIAQQITLLQRVCLSRGEWRKTHALVFKD 360 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 RPDYRF+LGEKGEVLDIVAEPRRIANRIVEE+MIAANICAARVLRDKLGFGIYNVH GFD Sbjct: 361 RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHTGFD 420 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE 480 PAN +ALAALLKTH +HVD +EVLTL+GFCKLRRELDAQP+GFLDSRIRRFQS+AEISTE Sbjct: 421 PANTEALAALLKTHDVHVDPQEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSYAEISTE 480 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM 540 PGPHFGLGLEAYATWTSPIRKYGDM+NHRLLKA++KGET RPQDE TVQMAERRRLNRM Sbjct: 481 PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIVKGETIARPQDEATVQMAERRRLNRM 540 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AERDVGDWLYARFL DKAGTDTRFAAEI+DISRGGMRVRLV+NGA+AFIPAPFLHAVRDE Sbjct: 541 AERDVGDWLYARFLSDKAGTDTRFAAEIIDISRGGMRVRLVENGAVAFIPAPFLHAVRDE 600 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 LVCSQENG+VQIKGETVYKVTDVIDV IAEVRMETRSIIARPV Sbjct: 601 LVCSQENGSVQIKGETVYKVTDVIDVNIAEVRMETRSIIARPV 643 >UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria RepID=RNB_BUCA5 Length = 649 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 361/644 (56%), Positives = 483/644 (75%), Gaps = 1/644 (0%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL QLK+ LH+++PR EG+VK+TE+GFGFLEVD QKSYFIPP MK VMHGD+I Sbjct: 1 MFQNNPLLTQLKKNLHAKSPRVEGIVKSTERGFGFLEVDPQKSYFIPPKNMKNVMHGDKI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 IA++ +EK+RE EPE+L+EPFL RFVGK++ K++RL IVPD+P LKD I C+ + + Sbjct: 61 IALLTTEKDREIVEPEKLIEPFLNRFVGKIEKKDNRLFIVPDYPFLKDLITCQPNKNCIN 120 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 F+ GDWAVA++++H LKGD FYAELT+ IT DD +PWWVTLARH+L+++ P Sbjct: 121 IFQNGDWAVAQLKKHKLKGDHLFYAELTEKITQEDDPLIPWWVTLARHDLDRKEPLAEED 180 Query: 181 EM-LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 ++ L E R+DLT LDF+TID+ +T+D+DDALF + + LIVAIADPTA+I GS Sbjct: 181 DLILKESDNRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGS 240 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 KLD A R FTNYLPGFNIPMLPR LS+D+CSL N+ RPVLAC +T+ +G I + IE Sbjct: 241 KLDVIASKRIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIE 300 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 FF A I+SK+KL YD VSDW+E G W P +++IA Q+ +L ++C R +WR +A++FK Sbjct: 301 FFLAWIKSKSKLSYDHVSDWIEKIGSWIPPTKSIANQILILHRLCLLRIKWRKKNAVLFK 360 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 D +YRF + E G+++D++ E RRIA++I+EE+MI ANI AA L +GFGIYNVH GF Sbjct: 361 DSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKNIGFGIYNVHSGF 420 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEIST 479 D NA+ + L+++ L+ +E+ TL GFC LRR L+ ++DSRIRRFQSF + ST Sbjct: 421 DLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYIDSRIRRFQSFGDFST 480 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNR 539 PGPHF LG YATWTSPIRKY DMINHRLLK++IK E + +P ++I ++++E+RR NR Sbjct: 481 IPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSIIKKEKSIKPGEDIKIKISEQRRRNR 540 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 MAERDV DWLY FL+ K + +F AEI DISR G+R RL++NGA FIP +H +R+ Sbjct: 541 MAERDVSDWLYTIFLQKKKYQNQKFNAEITDISRSGIRARLIENGANVFIPGTLIHPIRE 600 Query: 600 ELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 EL +QE+G V I G YK++D+I VT++++R++TRSIIA+PV Sbjct: 601 ELNFNQESGKVFINGIMHYKISDLIQVTLSDIRLKTRSIIAKPV 644 >UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria RepID=A6F7X7_9GAMM Length = 647 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 308/643 (47%), Positives = 413/643 (64%), Gaps = 1/643 (0%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MF+DNPLL+QLKQ + TP EG VK TE+GFGFLE D +SYFI PP MKK+MHGDRI Sbjct: 1 MFRDNPLLSQLKQNMRQNTPSVEGTVKGTERGFGFLEADDGESYFIAPPHMKKIMHGDRI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 A I + ++ SAEP+ LVE LTRF+ ++ ++L ++ D P++ I + Sbjct: 61 KAYIETNGDKTSAEPDTLVEAKLTRFIARISMTKNKLTVLADSPVINMPIRAKLVGLGKQ 120 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 + +GDW VA+++ H LK D SF AE+T ++ D PWWVTLAR +L K+ P + Sbjct: 121 KVNDGDWVVAQLKSHALK-DGSFAAEVTGFVATATDPNAPWWVTLARQDLAKDVPAMPDS 179 Query: 181 EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 + R DLT F TIDSAST+DMDDAL + + L++ VAIADPT++I S+ Sbjct: 180 VEFKDDTTRIDLTDKPFFTIDSASTQDMDDALLIEKTAEGNLKVTVAIADPTSYIPADSE 239 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 L+K A RAFT YLPG NIPM+PRELSD +CSL A E RP L C T+ DG + + EF Sbjct: 240 LNKIAAERAFTVYLPGRNIPMMPRELSDSVCSLVAGEKRPTLCCTYTIQEDGALAEEFEF 299 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 F A I S+ KL Y QVS+W+E +AEQ++ LA + R +WR N+A+VF D Sbjct: 300 FTAWITSQHKLSYTQVSNWIEEVSTEWQPEAQLAEQLQSLATFARHRQQWRKNNAIVFPD 359 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 +PDY F L E G VL I E RRIAN+++EE M+AANI AAR+ R G++N H GFD Sbjct: 360 QPDYSFELDETGNVLAIHVEHRRIANQMIEETMVAANITAARLFRQNGDVGVFNTHAGFD 419 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE 480 P D + LL HG+ E + +L G+ +L+R L + LDSR+RR QS++ IS Sbjct: 420 PEKIDLVVELLTEHGIECTKEHIQSLPGYVELQRTLAEKANPALDSRLRRMQSYSIISAS 479 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM 540 HF +GL+ YATWTSPIRKYGD+INHRL+KA + +A ++ + M+ERRR +RM Sbjct: 480 AERHFAMGLDGYATWTSPIRKYGDIINHRLIKATLTNGSAPSATEDEVILMSERRRQHRM 539 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AERD+ WLY +L + F A I+D++RGG+RVRL++NGA+AFIPA LH + E Sbjct: 540 AERDISSWLYVDYLTPAVESKQAFEASIMDVNRGGLRVRLLENGAVAFIPASLLHDNKKE 599 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + C E G + IK + Y + DVI V IAE+ E R+I+A+PV Sbjct: 600 VKCLVETGQISIKDQVEYSLGDVIYVNIAEINKEKRNIVAKPV 642 >UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_VIBC3 Length = 678 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 339/650 (52%), Positives = 451/650 (69%), Gaps = 7/650 (1%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQDNP LAQLKQ++ P+ EG +KA++KGFGFLEVD++ SYF+PPP MKK MHGD++ Sbjct: 1 MFQDNPRLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD-AIPCRAARGLN 119 +A I +E ERE AEP EL+E LTRF+G+V+ +L + PDHP LK ++ + +GLN Sbjct: 61 VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN 120 Query: 120 H-EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV 178 +F+EGDW VA + RHPLKGD F+ +++ IT +D PWWVTLA ++L P G+ Sbjct: 121 EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI 180 Query: 179 ATEML--DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 L D LVREDLTAL FVTID ST+DMDDAL+A+ LP+ L +AIADPTA+I Sbjct: 181 DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 ++DK A+ R FT YLPG NIPMLPR+L+D+LCSL N+VRP L C +T+ DG I D Sbjct: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300 Query: 297 NIEFFAATIESKAKLVYDQVSDWLE-NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 +I FFAA I+S A+LVYD VSDWLE + + SE IA+ VR L Q R W HA Sbjct: 301 DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWCETHA 360 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 +VF DRPDYRF L +V+ I A+ RR ANR+VEE+MI ANICA + L+ GFG++N Sbjct: 361 VVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNT 420 Query: 416 HMGFDPANADALAALLKTHGL-HVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSF 474 H GF + L+ +G + DAE + T++GF LRR L Q T +LD+RIR++QS+ Sbjct: 421 HAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSY 480 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-ITVQMAE 533 +EI +P PHF +GL+ YATWTSPIRKYGDMINHRLLKA I G+ + DE + ++A Sbjct: 481 SEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELAL 540 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R+ +++AER+V DWLYAR L D+ +TRF AEI DI+R GMRVRL++NGA+AFIP Sbjct: 541 HRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGAL 600 Query: 594 LHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + ++ + C+ E+GT+ I E VYK+ DV+++ + EV E RS++ +P Sbjct: 601 ILDNKERIECNGEDGTILIDKEVVYKLGDVLEIVLTEVNQENRSLVGKPT 650 >UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP83_CLOCL Length = 785 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 163/653 (24%), Positives = 288/653 (44%), Gaps = 33/653 (5%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIH---SE 67 + ++ G ++ KGFGF+ D + K FIP QM +HGDR++A I Sbjct: 59 YGVPARMNLIIGKLQGHSKGFGFVIPDEEGVKDVFIPSSQMGGAIHGDRVVAKITFGEKN 118 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 ++ E ++E +G + + ++P+ + I + K G Sbjct: 119 GKKCEGEIIRILERNTKEVIGTYEDSRNFGFVIPEDKRISFDIFV--PKNFRSGAKTGQV 176 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV--ATEMLDE 185 + E+ +P R+ ++ + D + + +H L +E P V A E +DE Sbjct: 177 VICEILEYPDDSRRNPEGKIKNILGNKGDKGIDILTIIKKHGLPEEFPAKVLDAAESIDE 236 Query: 186 GLV------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + R DL + VTID +D+DDA+ L + L V IAD T ++ E S Sbjct: 237 EIPDKEIARRRDLRDMMMVTIDGEDAKDLDDAVSLSKLDNGNYYLGVHIADVTHYVKESS 296 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 KLD A +R + YL IPMLPR+LS+ +CSL R L C M ++ G +E++ E Sbjct: 297 KLDNEAFLRGTSTYLIDRVIPMLPRKLSNGVCSLNPKVDRLTLTCFMEINDKGKVENH-E 355 Query: 300 FFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 + I++ A++ Y V+ L + + E + + + + ++ R V Sbjct: 356 IVESIIKTNARMTYTNVTKILRDKDQELIEEYKELVPMFQAMEELQHILEAKRKKRGAVD 415 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 D + + IL E G+ +DI R IAN+I+EE M+A N A + +Y +H Sbjct: 416 FDFQECKIILNEMGKPVDIKPYERAIANKIIEEFMLACNETIAEHMFWSKMPFVYRIHEE 475 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEI 477 + + + G V + + ++ ++ + +++ + R A Sbjct: 476 PNEEKLEHFNEFARNLGYVVKKTKEVHPKHLQEIVEQVKGKKEETVINTLLLRSMMQARY 535 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDEITVQ 530 S E HFGL + Y +TSPIR+Y D+ HR++K+ I G + T ++ ++Q Sbjct: 536 SPESLGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKSFINGKIDEKYMKKLTVTVEKASLQ 595 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 +ER R + AER+V D A ++ D+ G + I ++ GM V L +N I Sbjct: 596 SSERERAAQDAEREVDDLKKAEYMSDRIGE--VYEGIISSVTNFGMFVEL-ENTVEGLIH 652 Query: 591 APFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 L+ D+ E+ + + + +Y++ D I + + +V + I Sbjct: 653 ISTLN---DDYYVYDEDRLWLLGERTKNIYRLGDSIKIIVDKVDLAAHEIYFE 702 >UniRef50_C9R3S6 Exoribonuclease II n=7 Tax=Gammaproteobacteria RepID=C9R3S6_AGGAD Length = 659 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 322/656 (49%), Positives = 433/656 (66%), Gaps = 17/656 (2%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQDNPLLAQLKQQ+H R EG VK+T+K +GFLE + +KSYFI PP MKKVMHGD+I Sbjct: 1 MFQDNPLLAQLKQQIHDSKERVEGTVKSTDKAYGFLECE-KKSYFIAPPAMKKVMHGDKI 59 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQ-GKNDRLAIVPDHPLLKDAIPCRAARGLN 119 A I + ++E AEPE L+EP LTRF+ KV+ K+ +L ++ DHP + I + + Sbjct: 60 SATIEKQGDKEQAEPEALIEPILTRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQNKSVK 119 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 E +EGDW VA ++ HPL+ DR FYA++TQ+I DD PWWVTLARH +E G Sbjct: 120 KELQEGDWVVASLKTHPLRDDRFFYAQITQFICHADDELAPWWVTLARHEQPREPVQGQD 179 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD----KLQLIVAIADPTAWI 235 + + RE+LTAL FVTIDS +T+DMDDAL+ + L + QL+VAIADPTA+I Sbjct: 180 QYEMQDKETRENLTALHFVTIDSETTQDMDDALYIEPLTSNNEQTGWQLLVAIADPTAYI 239 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 + S+++K AK R FTNYLPGFNIPMLPRELSD+LCSL+ NE RP L C + G I Sbjct: 240 SLDSQIEKDAKQRCFTNYLPGFNIPMLPRELSDELCSLKPNETRPALVCYIQTDLQGNII 299 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGD-WQPESEAIAEQVRLLAQICQRRGEWRHNH 354 +F A ++SKAKL Y +VSD+LE + WQPE++ +A+Q+ L Q R +WR H Sbjct: 300 APAKFVLANVQSKAKLTYSRVSDYLEGKENAWQPENQDMAQQIHWLHQFSLARTQWRKTH 359 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 AL+FK++PDY F+LGE G+V +I AE RRIAN+IVEE+MI ANICAA+ L+ L GI+N Sbjct: 360 ALLFKEKPDYSFVLGENGKVQEIKAEYRRIANQIVEESMIIANICAAQFLQKNLQCGIFN 419 Query: 415 VHMGFDPANADALAALL----------KTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL 464 H GFD + L E + TL+G+C++R +++ +L Sbjct: 420 THSGFDKKFLENAHHFLLASLANEENKAELQARYTVEHLATLNGYCQMRHDIEPIEGDYL 479 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + R+RRF +FAE E PHFGLGL YATWTSPIRKY DM+NHRL+KA + +P+ Sbjct: 480 EFRLRRFLTFAEFKAELAPHFGLGLNGYATWTSPIRKYSDMVNHRLIKAYLAHRPYEKPE 539 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 + + V++ E RR NR+ ERD+ DWLY R+L DK F AE+ DI+RGG+RV L+ NG Sbjct: 540 ESVLVRLQEARRQNRLVERDIADWLYCRYLADKVAEKVEFEAEVQDITRGGLRVLLLANG 599 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 A FIPA LH ++E+V + + +K + +YK+ D++ V + EV+ TRSI+ Sbjct: 600 ASIFIPASTLHDNKEEIVINTDEIAFYVKDQRLYKIGDILRVQLTEVKEATRSIMG 655 >UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_CLOCE Length = 788 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 161/656 (24%), Positives = 280/656 (42%), Gaps = 34/656 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSE-- 67 + + S+ G ++ E+G+GFL D + + FIP + MH DR++A ++ + Sbjct: 62 RYGVPSRLNLVTGRIQGHERGYGFLIPDDELMEDVFIPADSLNGAMHNDRVVARVNKKSS 121 Query: 68 -KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + E +++ T VG + +VPD+ + I ++ H K+G Sbjct: 122 SDRKMEGEIIRILKRANTTLVGTFENSMSFGFVVPDNKRISGDIFV--SKSEFHGAKKGQ 179 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---- 182 V E+ ++P + R+ + + I ++ V + +NLE++ P+ V + Sbjct: 180 KVVVEILKYP-EARRNAEGRVIEIIGDRNETGVDILSIIKSYNLEEDFPEDVLNQANSIG 238 Query: 183 ----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 + R DL L VTID +D+DDA+ + L + +L V IAD T ++ E Sbjct: 239 DTVTEEMIQGRRDLRGLRMVTIDGEDAKDLDDAVSIETLENGNYRLGVHIADVTNYVTEN 298 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S LD A R + YL IPMLPR+LS+ +CSL + R + + + +G ++ Sbjct: 299 SPLDLEALDRGTSVYLVDRVIPMLPRKLSNGICSLNPHVDRLSFSVMIDIDKNGKAYNH- 357 Query: 299 EFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 E F + I ++ Y V L EN + + + + ++ + R + Sbjct: 358 EIFESVINIDERMTYTNVYKILEENDQELIKRYSHVVSDFQKMKELALILRKKRFQRGAI 417 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 D + R ++ EKG+ +D+ IAN+I+EE M+A N A +Y +H Sbjct: 418 DFDFDEARVVIDEKGKPIDVKRYEITIANQIIEEFMLACNETVAEHFFWTNTPFVYRIHE 477 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAE 476 D L L G + + L ++ + + + + R A Sbjct: 478 DPDEEKIHNLNEFLYNLGYSIKGINKIHPRALQDLLEKVKGTRHERIISTAMLRSLQKAR 537 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-------QDEITV 529 S E HFGL + Y +TSPIR+Y D+I HR++K +KG + EI Sbjct: 538 YSNESTGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKLYLKGGMSEEKINHLEGILPEIAK 597 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 Q +ER R AER+ D ++K G F I +++ GM + L DN + Sbjct: 598 QCSERERAADEAERESEDLKKVEYMKAHEGE--IFEGIIANVTSFGMFIEL-DNTIEGLV 654 Query: 590 PAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + D+ E+ V + +Y++ D + V +A+ + R I V Sbjct: 655 RMSSME---DDYYNYNESHYCLVGERTRKIYRIGDSVKVILAKADVAARKIEFILV 707 >UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR40_CLOB8 Length = 755 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 158/650 (24%), Positives = 285/650 (43%), Gaps = 34/650 (5%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEK---ER 70 H + G +++ KGFGFL + QK FIP + M+GD+I + E ++ Sbjct: 86 HEEEGLIIGSLQSHSKGFGFLIPEEEGQKDVFIPSNCINGAMNGDKISVRVTREDTKTKK 145 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 E E++E TR VG + + +V + P + + ++ + +GD Sbjct: 146 REGEVVEIIERNTTRIVGVYEDSKNFGFVVSEDPRISKDVFI--SKKDRNGANDGDVVTV 203 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML------- 183 ++ + P + +R +T+ + D + + + + L +E + V Sbjct: 204 KITKWPEE-NRKAEGVVTEVLGRKGDRGIDILMIIKKLGLPEEFSEKVQKYAEGISDEID 262 Query: 184 -DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 +E R DL L VTID +D+DDA+ + L + +L V IAD T ++ E S LD Sbjct: 263 EEEYKGRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVTHYVKENSPLD 322 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 K A RA + YL +PMLPR+LS+ +CSL R L C M + G + D+ E Sbjct: 323 KEALKRATSVYLIDRVVPMLPRKLSNGICSLNPRVDRLTLTCFMEIDHKGKVVDH-EIVE 381 Query: 303 ATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 + I++ ++ Y V+ L +N + + + + +++ ++C R + + Sbjct: 382 SVIKTNERMTYKDVTKILRDNDEELIKRYDYLVDDFKMMEELCGILRNKRTKRGAIDFEI 441 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 + + L E G+ ++I R I+NR++EE M+AAN A + +Y +H D Sbjct: 442 AEAKITLNELGKPIEIKPYDREISNRMIEEFMLAANETVAEHMFGTHLPFVYRIHESPDE 501 Query: 422 ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAEISTE 480 + G + E + F ++ ++ + + + + R A + E Sbjct: 502 EKLAKFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKNEETVVSTLLLRSMMQARYAPE 561 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI-------TVQMAE 533 HFGL E Y +TSPIR+Y D+ HR++K + GE +++ Q +E Sbjct: 562 CSGHFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYLHGEVDGTRINKLKNIVGYAAKQSSE 621 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R + AER+V D A +++++ G + F I ++ G+ V L N + Sbjct: 622 MERKAQDAEREVDDLKKAEYMQERIGQE--FEGIISSVTSFGIFVELP-NTIEGLVHITD 678 Query: 594 LHAVRDELVCSQEN--GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 L D+ E + + + +YK+ D + V V + R I + Sbjct: 679 L---DDDYYIFNEANLSLIGERTKKLYKLGDKVKVECVNVDITNREIFFK 725 >UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU Length = 779 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 158/657 (24%), Positives = 280/657 (42%), Gaps = 35/657 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSE-- 67 + + + +G + A KGF FL + FIPP ++ M+GD ++ ++S+ Sbjct: 62 RYGIPEKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQSS 121 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 R+ ++E + R VG + ++PD + I + + EG Sbjct: 122 GSRQEGTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFI--PKNGKNGAAEGHK 179 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA------TE 181 V ++ +P +G + E+ + +D + + +H L E P + Sbjct: 180 VVVKLTSYP-EGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPD 238 Query: 182 MLDEGLV--REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 +DE + R DL VTID A +D+DDA+ L D +L V IAD + ++ E S Sbjct: 239 TIDEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENS 298 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 +DK A R + YL IPM+P LS+ +CSL R L+C MT+++ G + ++ E Sbjct: 299 PIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEH-E 357 Query: 300 FFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 F + I++ ++ Y V+ L ++ + + + E + + + ++ Q + R + V Sbjct: 358 IFQSVIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVD 417 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 D + + ++ ++G V D+V R +A +++EE M+ AN A IY +H Sbjct: 418 FDFKEAKVLVDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477 Query: 419 FDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAE 476 + + T G V + + + +P + + + R A+ Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE--------IT 528 + HFGL E Y +TSPIR+Y D+I HRL++ + E I Sbjct: 538 YDPQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLPDIA 597 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + R AER+ D A ++ DK G + F I ++ GM V L N Sbjct: 598 EHTSSMERRAVDAERETDDLKKAEYMLDKIGEE--FDGMISSVTNFGMFVELP-NTIEGL 654 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSIIARPV 643 + F+ D+ E I T V+++ D I V + +V + R+I V Sbjct: 655 VHVSFM---TDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIV 708 >UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID=A4VQN3_PSEU5 Length = 833 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 176/692 (25%), Positives = 289/692 (41%), Gaps = 57/692 (8%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M +D L+ + + G V GFGFL D F+ P QM+ V G Sbjct: 66 MERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMRLVFDG 125 Query: 58 DRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR +A + + R E++ VG+ ++D +VPD+P ++ + Sbjct: 126 DRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVVPDNPKIQQEVLVTPG 185 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 R L + K G + ++ P + ++ + I + V L ++ P Sbjct: 186 RAL--DAKPGQFVEVKITHWPTQ-RFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHVWP 242 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD-----DKL 222 + V E + R DL L FVTID D DDA++ + Sbjct: 243 EAVLKEAARLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTGGF 302 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 +L VAIAD + ++ S LDK A +R + Y P +PMLP ELS+ LCSL + R + Sbjct: 303 RLYVAIADVSHYVKVDSALDKEAVVRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAM 362 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ-----PESEAIAEQV 337 C +TLS G + D +F+ A I S A+L Y++VS LE + E + + Sbjct: 363 VCEITLSKSGKMTD-YQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLPHL 421 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN 397 + L + + + RH + + + R + G ++ I R A++++EE M+ AN Sbjct: 422 KQLYSLYKVLLKARHTRGAIDFETQETRIVFGADRKIAAIKPTERNDAHKLIEECMLCAN 481 Query: 398 ICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV-DAEEVLTLDGFCKLRREL 456 + A L+ +Y VH + L A L GL + +E T + L ++ Sbjct: 482 VATAAFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEKI 541 Query: 457 DAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 +P + + + R S A S E HFGL EAYA +TSPIR+Y D++ HR +++VI Sbjct: 542 QGRPDFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSVI 601 Query: 516 KGETAT----------------RPQDEITV-----QMAERRRLNRMAERDVGDWLYARFL 554 + T P DE + Q + R A RDV +WL F+ Sbjct: 602 RSRRDTPHVRREGAPSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVVNWLKCEFM 661 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ--ENGTVQI 612 KD+ G F I ++ G+ V L D + + + + Sbjct: 662 KDRVGE--TFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPG---DYYHFDPLHHRLSGE 716 Query: 613 KGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 + +++ D ++V + V ++ R I +A Sbjct: 717 RSGRSFRLGDSVEVRVMRVDLDERKIDFELIA 748 >UniRef50_Q65SI5 Exoribonuclease 2 n=36 Tax=Gammaproteobacteria RepID=RNB_MANSM Length = 659 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 315/660 (47%), Positives = 427/660 (64%), Gaps = 18/660 (2%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL+QLKQQLH P EGVVK T+K +GFLE + ++++FI PP MKKVMHGD+I Sbjct: 1 MFQNNPLLSQLKQQLHDSKPHVEGVVKGTDKAYGFLETE-KETFFIAPPAMKKVMHGDKI 59 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQ-GKNDRLAIVPDHPLLKDAIPCRAARGLN 119 A I + +++ AEPEEL+EP LTRF+ KV+ K+ +L ++ DHP + I A+ + Sbjct: 60 KAAIETIGDKKQAEPEELIEPMLTRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQAKTVK 119 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 E KEGDW VA ++ HPL+ DR FYA++ ++I +D F PWWVTLARH + G Sbjct: 120 QELKEGDWVVATLKTHPLRDDRFFYAQIAEFICSAEDEFAPWWVTLARHEQSRYPVQGQE 179 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKAL--PDD---KLQLIVAIADPTAW 234 + + R DLTAL FVTIDS +T+DMDDAL+ + + P+D +L VAIADPTA+ Sbjct: 180 VYSMLDTETRRDLTALHFVTIDSENTQDMDDALYIEPVTAPNDEQTGWKLAVAIADPTAY 239 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 IA S+++K A+ R FTNYLPGFNIPMLPRELSD+LCSL NE R L CR+ G I Sbjct: 240 IALDSQIEKDARKRCFTNYLPGFNIPMLPRELSDELCSLMENETRAALVCRLETDMQGEI 299 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGD-WQPESEAIAEQVRLLAQICQRRGEWRHN 353 EF A ++SKAKL Y+ VSD+LE + WQPE+E+ +Q+ L Q R WR Sbjct: 300 VGEPEFILAQVQSKAKLAYNNVSDYLEQVENAWQPENESTQQQINWLHQFALVRINWRKK 359 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 H L+FK++PDY F+L + G V +I AE RRIAN+IVEE+MI ANIC A L GI+ Sbjct: 360 HGLLFKEKPDYSFVLADNGHVREIKAEYRRIANQIVEESMIIANICCAHYLAKNAQTGIF 419 Query: 414 NVHMGFDPANADALAALL----------KTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF 463 N H+GFD L + E + TL G+C++R +++ + Sbjct: 420 NTHVGFDKKFLPNAHNFLMANLSNEENQQELAERYSVENLATLAGYCRMRHDIEPIEGDY 479 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 L+ R+RRF +FAE +E PHFGLGL YATWTSPIRKY DM+NHRL+KA + +P Sbjct: 480 LEFRLRRFLTFAEFKSELAPHFGLGLTGYATWTSPIRKYSDMVNHRLIKACLANRECVKP 539 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 DE ++ E R+ NRM ERD+ DWLY R+L DK ++ F AE+ D RGG+RV+L++N Sbjct: 540 SDETLARLQEARKQNRMVERDIADWLYCRYLADKVESNPEFRAEVQDCMRGGLRVQLLEN 599 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 GA F+PA +H +DE+ + + + I GE YK+ D++++ + EV+ ETRS+I V Sbjct: 600 GASVFVPASSIHPNKDEIQVNTDELALYINGERRYKIGDIVNIRLTEVKEETRSLIGNLV 659 >UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K401_AZOSB Length = 993 Score = 630 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 181/661 (27%), Positives = 297/661 (44%), Gaps = 29/661 (4%) Query: 1 MFQDNPLLAQLKQQ--LHSQTPRAEGVVKATEKGFGF-LEVDAQKSYFIPPPQMKKVMHG 57 M +D L+ + L + G V+ GFGF + D Q F+ P +M++V+HG Sbjct: 50 MERDGQLMRNRRDAFLLPDKADLIRGRVEGHPDGFGFLVRDDGQPDIFLGPKEMREVLHG 109 Query: 58 DRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR I I + R + E++E +R VG+V ++ + +VP++ L I Sbjct: 110 DRAIVRIAGQDRRGRPEGKVVEILERANSRVVGRVLNEHGVMIVVPENRRLAQDILVAPG 169 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + + G E+ P K + +T+ + D + + L +H+L E Sbjct: 170 ---GKKVQPGQVVTVELIEQPTKYAQPI-GRVTEVLGNYADPGMEIEIALRKHDLPFEFS 225 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + + RED+TAL VTID + +D DDA++ + +L+VA Sbjct: 226 SEAKADTRKLPTAVRKKDWAGREDITALPLVTIDGETAKDFDDAVYCERQGRG-FRLVVA 284 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ GS LD+ A R + Y P IPMLP +LS+ LCSL R + M Sbjct: 285 IADVSHYVEAGSALDRDAYERGNSVYFPRRVIPMLPEKLSNGLCSLNPQVERLCMVADMG 344 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQR 346 +S G I+ F+ A + S A+L Y +V+ L +N E + + L ++ + Sbjct: 345 ISMTGEIKA-YRFYPAVMFSHARLTYTKVAAALYDNDATALDEIGGLLPHLENLDKLFRV 403 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R + + + R I + G++ IV E R A+R++EE M+AAN+CA+ L Sbjct: 404 LLKARAKRGAIDFETTETRMIFDDNGKIERIVPETRNDAHRLIEECMLAANVCASDFLHK 463 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLD 465 +Y VH G P + L L GL + + + L ++ +P L Sbjct: 464 NDHPALYRVHEGPTPEKLEKLRTFLSEFGLPLGGGDEPRAKDYAALLDKVKDRPDAQLLQ 523 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR-PQ 524 + + R A S + HFGL EAY +TSPIR+Y D++ HR +KAV+ GE Sbjct: 524 TVMLRSLRQAVYSPDNVGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLAGEHYAAGDW 583 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 D+I + + R A RDV WL +++DK G + F + + G+ V L Sbjct: 584 DDIGLHCSTTERRADEATRDVVAWLKCYYMQDKVGEE--FEGSVSAVVPFGLFVALDGIF 641 Query: 585 AIAFIPAPFLHAVRDELVCSQE--NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + L A + E + + + ++++D + V + V MET I R Sbjct: 642 IEGLLHVSELGA---DYFHYDEARHAMLGERTGKQFRLSDRVRVQLVRVDMETNKIDFRL 698 Query: 643 V 643 V Sbjct: 699 V 699 >UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5_PAESJ Length = 941 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 164/665 (24%), Positives = 272/665 (40%), Gaps = 43/665 (6%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSE-- 67 + + + G ++A KGF FL D + +I K M+GD + I S+ Sbjct: 59 RYGVPERMNLLRGKIQAHAKGFAFLLPDEKDHPDVYIHANDQKSAMNGDIALVRITSQSE 118 Query: 68 -KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 R E +V+ +T+ VG + +VPD + I +G G Sbjct: 119 GGGRMEGEVVRIVQRAVTQVVGTFESHEAFGFVVPDDKRINRDIFI--PKGEFQGAVTGQ 176 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEG 186 V ++ +P +G + E+ + + +D + + +H L + D V E Sbjct: 177 KVVVKITSYP-EGRSAAQGEIIEILGHKNDPGIDILSIIRKHQLPEGFSDEVMAEAEAAP 235 Query: 187 LV----------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 R DL VTID +D+DDA+ K L + L V IAD ++ Sbjct: 236 DSITEEEIVEQGRRDLRGEVIVTIDGEDAKDLDDAVHVKRLENGNYLLGVHIADVGYYVK 295 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S LD+ A R + YL IPMLP LS+ +CSL R L+C M + Sbjct: 296 ERSALDQEAFRRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFDSKLKRVR 355 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENT-----GDWQPESEAIAEQVRLLAQICQRRGEWR 351 + + F + I++K ++ Y V L T + + + + L+ ++ + + R Sbjct: 356 H-DIFTSVIKTKERMTYTNVRKILMATEEEPETELKERYADLLDMFTLMEELAMKLRKKR 414 Query: 352 HNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 + D + + I+ ++G+ +DIV R +A +I+EE M+AAN A Sbjct: 415 MKRGAIDFDFQESKVIVDKEGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLRVPF 474 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDA-QPTGFLDSRIR 469 +Y +H D G V + + L E+ + + + + Sbjct: 475 LYRIHEDPDQEKLLHFMQFASNFGYVVKGKGNSVHPRALQTLLEEIHGTKEETVISTVML 534 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---------KGETA 520 R A+ E HFGL E Y+ +TSPIR+Y D++ HR+++ V+ + E Sbjct: 535 RSMKQAKYDAESLGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVLENGGALPEIRNEAL 594 Query: 521 TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 +I +ER R+ AERD F+ DK G + F I ++ GM V L Sbjct: 595 AARMPDIAQHSSERERVAVDAERDTDKLKKCEFMLDKVGEE--FDGIISSVTSFGMFVEL 652 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSI 638 DN I L + D+ E V I T VY++ D + + +A+V M+ +I Sbjct: 653 -DNTVEGLIR---LSGLTDDYYHFHELHMVLIGERTSKVYRIGDEVKIRVAQVNMDDYTI 708 Query: 639 IARPV 643 V Sbjct: 709 DFEMV 713 >UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_AMMDK Length = 715 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 167/654 (25%), Positives = 270/654 (41%), Gaps = 34/654 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSE-- 67 + L Q G ++ +G+ FL D + FIPP + MH DR+ + Sbjct: 58 RYGLPEQFNLVVGRLECHPRGYAFLVPDREGEPDVFIPPGCLGGAMHQDRVAVRLFPGSH 117 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 E ++ + VG + K + +VPD P L + +G + + G+ Sbjct: 118 GRTREGEVVRVLRRAHRQLVGTLYKKRRSVFVVPDDPRLTHQVVI--PKGKLNGARNGEK 175 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 V E+ +P + + + D + V R+ L P V E Sbjct: 176 VVVELTTYPGPYT-PAEGRVVEVLGPEDAPGMDMLVLCRRYGLPDGFPPEVEEEAENIPL 234 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 +E R DL VTID +D+DDA+ + L D +L V IAD + ++ EGS Sbjct: 235 TIRPEELAGRRDLREWLIVTIDGEDAKDLDDAVSLELLHDGTYRLGVHIADVSYYVREGS 294 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD+ A R + YLP IPMLP LS+ +CSL E R L+ M + + G + + E Sbjct: 295 ALDREAFQRGTSIYLPDRVIPMLPPRLSNGICSLNPEEDRLTLSVLMRVDSKGEVLE-YE 353 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 F + I SKA+L Y V+D+L G + + L+ ++C R + Sbjct: 354 LFPSVIRSKARLTYRAVNDYLAGRGGVPAPLPGLGRMLELMQELCLCLRRRRLKQGAIDF 413 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 + P+ + +L E+G +D+ R I +I+EE M+ AN AR IY +H Sbjct: 414 NLPETKVVLDEEGRTVDVYPAERGIGEQIIEEFMLLANETVARHAAKLQLPFIYRIHPQP 473 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEIS 478 DP +L LL + G L F ++ + +P +++ + R A + Sbjct: 474 DPEKVASLEELLASLGYQNTRLGTLEPARFQEVLEAVAGKPEERLVNAVMLRSLKQARYA 533 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ---------DEITV 529 E HFGL E Y +TSPIR+Y D+ HR+L+ + P+ E Sbjct: 534 AERSEHFGLASEYYTHFTSPIRRYPDLFIHRVLRETVLKGAGLSPRRRARLEKLAQEAAA 593 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 Q +ER RL ER+ D F+ DK G + +A I ++ G+ V L +N + Sbjct: 594 QSSERERLAMEVEREAVDIKKVAFMVDKVGRE--YAGFISGVTNWGLYVML-ENTVEGLV 650 Query: 590 PAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 L D+ E V +++ D + V + + + + Sbjct: 651 HVRHL---TDDFYFYDEKNYALVGRHTGKRWRLGDPVRVRVLRASVPEKLVEFS 701 >UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID=Q0K976_RALEH Length = 909 Score = 625 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 165/697 (23%), Positives = 292/697 (41%), Gaps = 69/697 (9%) Query: 6 PLLAQLKQQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDR--IIA 62 L + + +L Q G V+ GFGFL D + F+P +++K MH DR + Sbjct: 100 ELNRKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRV 159 Query: 63 VIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 V + + R + E++E +G++ + L + P+ + I + Sbjct: 160 VGYDRRGRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPK--AQGKA 217 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 + G E+ P + + + + + DD + + + ++ + A E Sbjct: 218 RVGQVVSVELIEFPDRYVQP-VGRVVEVLGEIDDPGMEIEIAVRKYGVPHAFSPAAAQEA 276 Query: 183 --------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD---KLQLIVAIADP 231 + R DL + VTID D DDA++ + + +LIVAIAD Sbjct: 277 SALPDEVRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIADV 336 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ G+ LD A RA + Y P IPMLP +LS+ LCSL + R + C ++A Sbjct: 337 SHYVRPGTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVDRLCMVCDAVITAK 396 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA-EQVRLLAQICQRRGEW 350 G ++ +F+ A + S A+L Y++V L NT + ++ L ++ Q + Sbjct: 397 GELK-GYQFYPAVMHSTARLTYNEVWSVLSNTKGPEAHKRGELVPHLQNLYELFQVLLKA 455 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R + D + + +G++ I+ R A+R++EE M+ AN+CAA L Sbjct: 456 RRARGAIDFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHP 515 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIR 469 +Y +H G L L+T GL + + + ++ ++ ++P L + + Sbjct: 516 ALYRIHAGPSEEKLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLL 575 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG------------ 517 R A S + HFGL EAYA +TSPIR+Y D++ HR +KAV+ Sbjct: 576 RSMQQAVYSPDNIGHFGLSYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGTE 635 Query: 518 ----------------------------ETATRPQDEITVQMAERRRLNRMAERDVGDWL 549 DE+ + + R A RDV WL Sbjct: 636 LNTAISPKARRLQAKDAEQKAELTAARARRNEAIWDELGLHCSANERRADEASRDVEAWL 695 Query: 550 YARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT 609 F++DK G+D +A + ++ G+ V+L + + L + + Sbjct: 696 KCYFMRDKLGSD--YAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSD----YFQYDEAR 749 Query: 610 VQIKGETV---YKVTDVIDVTIAEVRMETRSIIARPV 643 +++GE Y++TD + V ++ V ++ R I R V Sbjct: 750 NELRGERTGIRYRLTDRVRVQVSRVDLDARKIDFRLV 786 >UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms RepID=A6ED44_9SPHI Length = 709 Score = 623 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 146/655 (22%), Positives = 263/655 (40%), Gaps = 38/655 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEK- 68 K +L G V T G F+ D + K F+ ++ +HGD++ I+++K Sbjct: 69 KFKLKDLKTFIIGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAKKS 128 Query: 69 -ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + E E++E T F+G ++ + ++ D + I + K Sbjct: 129 GRKNEGEVVEIIERAKTDFIGVIKISDRFAFVIADDKKMMQDIFV--PLSDLNGAKNRQK 186 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 ++ P +G ++ + + ++ LA++ + P V E Sbjct: 187 VQVKITDWP-EGVKNPIGTVITILGEQGENNTEMNAILAQYGFPLQFPPEVEKEANAIPE 245 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 DE R D TID A +D DDA+ K L + ++ V IAD ++ S Sbjct: 246 QITADEIKDRRDFRETVTFTIDPADAKDFDDAISFKKLDNGHYEVGVHIADVAHYVTPNS 305 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LDK A RA + YL IPMLP LS+ +CSLR +E + A L I + Sbjct: 306 ALDKEAYGRATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFELDNKANIINEW- 364 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 F I S + Y++ + +EN +E++ L ++ + + + + Sbjct: 365 FGRTVIHSDRRFSYEEAQEVIENKTG------DFSEEILKLNELAYILRDKKFKNGAISF 418 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-----FGIYN 414 + + +F L E G+ L + + R+ A++++E+ M+ AN A + K IY Sbjct: 419 ESTEVKFKLDEDGKPLGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFIYR 478 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDA-QPTGFLDSRIRRFQ 472 H + N A G ++ + + L +++ + L R Sbjct: 479 SHDSPNLENLGNFALFAARFGYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSM 538 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--TRPQDEITVQ 530 + A +T+ H+GL + Y +TSPIR+Y D++ HRLL A + E + + Sbjct: 539 AKAVYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNKEKSADAEEYEIAASH 598 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 + + AER + A +L++ G + I ++ GM V L DN I Sbjct: 599 SSTMEKRAADAERASIKYKQAEYLEENIGN--LYKGIISGVTEWGMYVELADNKCEGMIR 656 Query: 591 APFLHAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 L + D+ E I + + Y++ D + V + +V + R I + Sbjct: 657 ---LRDLSDDFYVLDEKNYCIIGQRKKKTYQLGDEVQVKVKKVDLSKRQIDFSLI 708 >UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1V4B6_BURMS Length = 896 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 180/688 (26%), Positives = 296/688 (43%), Gaps = 71/688 (10%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVI--HSEKE 69 QL + G V+ G+GF+ D Q F+P +M+KVMH DR++A I + + Sbjct: 149 YQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLARIVGYDRRG 208 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R E+ E R +G++ +N L + P+ + I + K G V Sbjct: 209 RPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILVTQN---AKKAKVGQVVV 265 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA-----------PDGV 178 E+ P + + + + + DD + + + ++ + E PD V Sbjct: 266 VELTDFPSRHSQPL-GRVCEVLGDIDDPGMEIEIAVRKYGVPHEFGAQALGEAAALPDKV 324 Query: 179 ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP---DDKLQLIVAIADPTAWI 235 L R DL + VTID D DDA++ + + +LIVAIAD + ++ Sbjct: 325 RPADLR---YRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRLIVAIADVSHYV 381 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 GS LD A R+ + Y P IPMLP +LS+ LCSL R VLAC M ++A G I+ Sbjct: 382 QPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGDIK 441 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENT-GDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 +F+ A I S A+L Y +V+ L NT G + ++ L + + R Sbjct: 442 -AYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELMPHLQHLYGVYKALFVARQKR 500 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 + D + + +G++ I+ R A+R++EE M+AAN+CAA L+ G+Y Sbjct: 501 GAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKHPGLYR 560 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQS 473 VH G P + L A L+ GL + + + L + +P L + R Sbjct: 561 VHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPMLLRSMQ 620 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP---------- 523 A S + HFGL +AYA +TSPIR+Y D++ HR + A++ G+ T Sbjct: 621 QAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKSPEGVELNTA 680 Query: 524 -------------------------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKA 558 +E+ + + R A RDV WL F++DK Sbjct: 681 LSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEAWLKCYFMRDKL 740 Query: 559 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETV- 617 G + + + ++ G+ V+L + L A + +++GE Sbjct: 741 GEE--YGGMVNGVTSFGIFVQLDALFIEGLVHVTELGAD----YFQYDEVKNELRGERTG 794 Query: 618 --YKVTDVIDVTIAEVRMETRSIIARPV 643 Y+++D + V ++ V ++ R I R V Sbjct: 795 IRYRLSDRVRVQVSRVDLDARKIDFRLV 822 >UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RNR_SHIFL Length = 813 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 162/673 (24%), Positives = 280/673 (41%), Gaps = 37/673 (5%) Query: 1 MFQDNPLLAQLKQ--QLHSQTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHG 57 M +D L+ +Q L + +G V G+GFL V+ +K ++ QMK +HG Sbjct: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 Query: 58 DRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D+++A K R A ++ P ++ VG+ + +VPD L I Sbjct: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + + G V E+ + P + ++ ++ + + + + L H + P Sbjct: 182 Q--IMGARMGFVVVVELTQRPTRRTKA-VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V ++ + R DL L VTID D DDA++ + +L VA Sbjct: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ + LD+ A+ R + Y P IPMLP LS+ LCSL R + C MT Sbjct: 299 IADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 +S+ G + +F+ A + S A+L Y +V L+ D + + + + + L + + Sbjct: 359 VSSKGRLT-GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + R + + + +FI + + I R A++++EE MI ANI AAR + Sbjct: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDS 466 ++ +H + ++L GL + + +L + +P L + Sbjct: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------- 519 + R A E HFGL L++YA +TSPIR+Y D+ HR +K ++ E Sbjct: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 Query: 520 -------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 + ++ + R A RDV DWL F+ D+ G F I ++ Sbjct: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN--VFKGVISSVT 655 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ-ENGTVQIKGETVYKVTDVIDVTIAEV 631 G VRL D + L D Q + Y++ D ++V + V Sbjct: 656 GFGFFVRLDDLFIDGLVHVSSL--DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 Query: 632 RMETRSIIARPVA 644 M+ R I ++ Sbjct: 714 NMDERKIDFSLIS 726 >UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ2_PEDHD Length = 709 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 147/652 (22%), Positives = 264/652 (40%), Gaps = 38/652 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEK- 68 K +L G V T G F+ D + K F+ ++ +HGD++ I+++K Sbjct: 69 KFRLKDLKTFITGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAKKS 128 Query: 69 -ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + E E++E T F+G ++ + D + I + K G Sbjct: 129 GRKNEGEVVEIIERSKTDFIGVIRISERYAFVNVDDRKMLHDIFV--PLNDLNGAKNGQK 186 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 + P +G ++ ++ + ++ LA++ P V E Sbjct: 187 VQVSITEWP-EGVKNPIGKIINILGEQGENNTEMNAILAQYGFPLSFPAEVELEANAIPE 245 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 E R+D TID A +D DDA+ K L + ++ V IAD + ++ S Sbjct: 246 QVSAAEIKGRKDFRNTTTFTIDPADAKDFDDAISFKTLENGNYEIGVHIADVSHYVKPNS 305 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LDK A RA + YL IPMLP LS+ +CSLR NE + A L + + Sbjct: 306 SLDKEAYARATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFELDEKANLVNEW- 364 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 F I S + Y++ + +EN A ++ L ++ + + + + Sbjct: 365 FGRTVIHSDRRFSYEEAQEVIENKAG------DYAAEILKLNELAYILRDKKFKNGAISF 418 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-----FGIYN 414 + + +F L E G+ + + + R+ A++++E+ M+ AN A + K +Y Sbjct: 419 ESTEVKFKLDETGKPIGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFVYR 478 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDA-QPTGFLDSRIRRFQ 472 H + N A G ++ + + L +++ + L R Sbjct: 479 SHDSPNLENLGNFALFAARFGYKINMKSDKEIAKSLNYLMEDVEGKKEQNVLTQLAIRSM 538 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-EITV-Q 530 + A +T+ H+GL + Y +TSPIR+Y D++ HRLL A + E + ++ EI Sbjct: 539 AKAIYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNNEKSANEEEYEIAASH 598 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 + + AER + A +L++ G FA I ++ GM V L +N I Sbjct: 599 SSAMEKRAADAERASIKYKQAEYLEENVGN--IFAGIISGVTEWGMYVELTENKCEGMIR 656 Query: 591 APFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 L + D+ E V + + Y++ D + V + +V + R I Sbjct: 657 ---LRDITDDFYVLDEKNYCIVGQRKQKKYQLGDEVQVKVKKVDLAKRQIDF 705 >UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJU5_ACIFE Length = 823 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 156/652 (23%), Positives = 266/652 (40%), Gaps = 31/652 (4%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDA---QKSYFIPPPQMKKVMHGDRIIAVIHSEK- 68 L + G + T KGF F+ + FIP + M GD +IA + Sbjct: 62 YGLPAAMGLVVGRCQVTSKGFAFVIPEEKTEDGDLFIPASSLSGAMDGDTVIARVMQSGY 121 Query: 69 -ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 +R+ + ++ + VG + ++PD+ + I R R + ++ + Sbjct: 122 DDRQEGKIIRILNRAHHKLVGTFSKSGEFGFVIPDNKRVGRDIYVR--RKDFNGARDKEK 179 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--- 184 V E+ P + R+ ++ + + D + + ++L + P V Sbjct: 180 VVVEITTWPDE-RRNAEGKIVEILGKPGDIGLEILSIIKDNDLPTKFPAPVQVAAEKVEQ 238 Query: 185 -----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 E R D + +TID ++D+DDA++ + D L V IAD + ++ S Sbjct: 239 KIKKKEIQNRLDRRDWNIITIDGVDSKDLDDAVYVEK-QGDNYFLGVYIADVSYYVQPHS 297 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD+ A R + YL +PMLP ELS+ +CSL E R +AC M L + Sbjct: 298 VLDQEAYERGTSVYLVDRVLPMLPVELSNGICSLNEGEDRLTMACEMLLDGKTGRTLSFT 357 Query: 300 FFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 I + ++ Y V L + + + I + +A++ Q + R + Sbjct: 358 IAPCVINNHHRMNYPDVRAILVDQDEALREKYADIVPMLEDMARLQQVLHKKRERRGAIN 417 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 + P+ + +L ++ + IV R +A ++EE M+AAN A + IY VH Sbjct: 418 FELPEQKVLLDDQKHPVAIVKRERSVAEMLIEEFMLAANETVAGFMARHKRPFIYRVHDL 477 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEI 477 DP LA L+ G+ + EE + + ++ +P + + R A Sbjct: 478 PDPEKIQNLAKLMALFGVTLKVEEKMRPKDLQRALDKVAGKPEEKLVSTVALRSMRQAVY 537 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE--------ITV 529 TE HFGL Y +TSPIR+Y D++ HRLL+ + GE +R Q E + Sbjct: 538 QTENIGHFGLAAHFYTHFTSPIRRYPDLMVHRLLRRQLDGERLSRQQAEERTQRLSLVAS 597 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R R AER D A ++ G + F I +S G V L DNG + Sbjct: 598 HCSVRERAAIDAERQTVDLKMAEYMVQFVGKE--FTGTISGVSSFGFFVEL-DNGVEGLV 654 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 L+ + + Q Q G Y++ D +D+ + +V + R I Sbjct: 655 HVSSLNDDYYDYIEGQYALIGQHLGHR-YRLGDQVDIQVLQVDVAERKIDFV 705 >UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=A1AN74_PELPD Length = 777 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 166/675 (24%), Positives = 269/675 (39%), Gaps = 42/675 (6%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M QD L+ L S G + + G+GF+ + FIP M+ MHG Sbjct: 44 MAQDGELVRFRGNSYALASAATSIRGKLSSHRDGYGFVTPQGGGEDIFIPQRHMRGAMHG 103 Query: 58 DRIIAVIHSEK---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 D + + + +VE ++R VG+ + ++P+ L I Sbjct: 104 DTVEVHAERSRMGGGKFEGRITSVVERGVSRVVGRYEETRRGAIVIPEETRLNLVIAIPP 163 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 ++G V E+ +P+ G R + + + + DD V + R +L Sbjct: 164 K--GRGLAQDGQQVVVELSSYPV-GGRPAEGNVVEVLGWPDDPEVEVQSAIRRFDLPHVF 220 Query: 175 PDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 E E R DL L VTID + D DDA+ + D +L V Sbjct: 221 APDTLAEAEAIPETVPAQELAGRVDLRPLATVTIDGETARDFDDAVSLRR-EGDNFRLWV 279 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 +IAD + ++ S LD+ A +R + Y P IPMLP LS+ +CSL R + M Sbjct: 280 SIADVSHYVRPDSPLDRDAYLRGTSVYFPDRCIPMLPERLSNGICSLNPGVERLTMTAEM 339 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQ 345 DG++ ++ F+ I S A+L Y QV + + + + + + ++ Sbjct: 340 LFDRDGSMLES-SFYPGIIASAARLTYTQVKRVIVDQDRETADSLGTVTPMLLEMKELAL 398 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 R + D P+ I+G G IV R +A++++EE M+AAN A + Sbjct: 399 ILMGMRRKRGSIDFDLPESEVIIGLTGLTEGIVRAERTLAHQLIEEFMLAANEAVALFIA 458 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDAQPTG-F 463 +K +Y +H DPA G EE + +L +P Sbjct: 459 EKGIPLLYRIHENPDPAKLINFQEFAFGFGYEFPLKEERVNPADLQRLLESAAGRPEERM 518 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-------- 515 ++ + R A + E HFGL Y +TSPIR+Y D++ HR+LKA++ Sbjct: 519 INYALLRCMKQARYAAENLHHFGLASRCYCHFTSPIRRYPDLVVHRILKALLALAENRGS 578 Query: 516 -----KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 + AT E+ ++R R+ AERD+ + A+F++ G + F I Sbjct: 579 KQAEKRLSLATHNLSEVGEHTSKRERVAMEAERDIVELKKAQFMQQHLGEE--FDGFITG 636 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN--GTVQIKGETVYKVTDVIDVTI 628 ++ G V L + + L D+L EN V V ++ D V + Sbjct: 637 VTGFGFFVELEELFVEGLVHVSTL---DDDLYTFVENRHSLVGRNRGRVLRIGDRARVRV 693 Query: 629 AEVRMETRSIIARPV 643 A V TR I V Sbjct: 694 ASVSPATRRIEFVLV 708 >UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms RepID=Q11XW5_CYTH3 Length = 750 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 161/675 (23%), Positives = 284/675 (42%), Gaps = 50/675 (7%) Query: 5 NPLLAQLKQQLHSQT------PRAEGVVKATEKGFGFLEVDAQK---SYFIPPPQMKKVM 55 +LA+ K L+S G V F ++ + +K +I +M + Sbjct: 65 EGILAKDKSGLYSNAGSSGGESLVTGRVDFVNARFAYVIPEGEKADNDIWISSNKMSGAL 124 Query: 56 HGDRIIAVIHSEKERE-------SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD 108 GD + ++ + E E+VE T FVG+++ +VPD + Sbjct: 125 DGDIVRVAVYKKSGGGNKGTKSAEGEIVEIVERKRTSFVGRIEVSARHAFVVPDGRKMHV 184 Query: 109 AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARH 168 I + + K G+ + ++ P + ++S ++T+ + ++ LA Sbjct: 185 DIFI--PKEHINGAKTGEKVLVDITAWPTRDEKSPTGKVTEVLGMAGENETEMHAILAEF 242 Query: 169 NLEKEAPDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220 L E P+ V D E R D+ TID +D DDA+ K L + Sbjct: 243 GLPYEFPNQVIKAAQDITAETSEAEIKKRRDMRGTTTFTIDPEDAKDFDDAISFKYLDNG 302 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 ++ V IAD + ++ G LDK A RA + YL +PMLP LS++LCSLR NE + Sbjct: 303 NWEIGVHIADVSHYVQPGDTLDKEAYRRATSVYLVDRCVPMLPERLSNELCSLRPNEDKL 362 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL 340 + + AD + D F I S + Y+Q + +E + + +++ +L Sbjct: 363 TFSAIFEIDADAKVLDEW-FGRTIIHSTRRFSYEQAQEVIE------TQQGDLVKELTIL 415 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 + ++ R + + + +F L KG+ L +V + R+ A++++EE M+ AN Sbjct: 416 NTLAKKMRAQRFKEGAISFETVEVKFQLDAKGKPLAVVPKVRKDAHKLIEEFMLLANKRV 475 Query: 401 ARV---LRDKLGFG---IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLR 453 A LR G +Y H +P +LA K G V+ ++ + KL Sbjct: 476 AEFVFNLRKGKGTSNTMVYRTHDAPNPEKLASLATFAKRFGHKVELDDENAIAKNLNKLS 535 Query: 454 RELDAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK 512 E++ +P L S R S A S EP HFGL + Y+ +TSPIR+Y D++ HRLL+ Sbjct: 536 DEVEGKPEQNVLQSLAIRTMSKAIYSIEPDMHFGLAFKHYSHFTSPIRRYPDVMAHRLLQ 595 Query: 513 AVIKGETATRPQD--EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 + G + + E + + +L AER + F++ G + F + Sbjct: 596 HYLDGGKSADKEYYIEACEHSSAQEKLAAEAERSSIKFKQVEFMQSSIGKE--FEGIVSG 653 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTI 628 ++ GM V +V+ + L + D+ + V + + + + D + V + Sbjct: 654 VTEFGMFVEIVETKCEGMVR---LADMDDDFYEVDTDNYRIVGKRNKRMITLGDSVQVIV 710 Query: 629 AEVRMETRSIIARPV 643 +E R+I V Sbjct: 711 KSTNLERRTIDLELV 725 >UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_NATTJ Length = 709 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 142/657 (21%), Positives = 277/657 (42%), Gaps = 35/657 (5%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEK-- 68 L + G ++ KG+ FL D F+ P + +H D+++ IH E+ Sbjct: 60 YGLPERMNLQIGTIQGHPKGYAFLLPDKPGSPDVFLSPKSLNGALHNDKVLVRIHKEEML 119 Query: 69 -ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 ++ E ++ ++ VG + +VPD + + + K G Sbjct: 120 NQKPEGEVVRIISRGMSEVVGTFDKSDRFGFVVPDDDRFFRDVFIN--KADANGAKNGQK 177 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--- 184 VA++ P ++ E+ + I D V + ++ L ++ P V ++ + Sbjct: 178 VVAQITGWPDTPAKNPEGEIIKVIGNPSDPGVDIETIINKYGLSEDYPPKVKEQLEEVPN 237 Query: 185 -----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + RE + L VTID + +D+DDA+ + L + ++L V IAD + ++ EG+ Sbjct: 238 EISPKDYEGRELIQGLPTVTIDGSDAKDLDDAVSLEKLDNGNMELGVHIADVSYYVREGT 297 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LDK A+ R + YL +PMLP +LS+++CSL R ++ + L+ +G I N Sbjct: 298 PLDKEARQRGTSVYLVDRVLPMLPPKLSNNICSLNPGVERLTMSAFVELTEEGDI-ANYR 356 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 + I+S +L Y++V++ + + + + + +A + + I ++ E R + + Sbjct: 357 LTPSVIKSNYRLTYEEVNELFDGSKEIEEKYPDVAWMLFEMKTISEKLRERRFDEGAIDF 416 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 + + +L ++G+ + R A +++EE M+ AN A + IY VH Sbjct: 417 EFDEPVVVLDDQGKPESVEKRARGSAEKLIEEFMLLANRVVAEHHYNLDMPFIYRVHEQP 476 Query: 420 DPANADALAALLKTHGLHVD---AEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAE 476 D G ++ EE+ ++ L D + + + + R A Sbjct: 477 DDEKVSTFREFASKFGYYLPKPEGEEIYPIEFQKVLEEAKDTREERAISTMMLRSMKQAR 536 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR--------PQDEIT 528 + E HFGL + Y +TSPIR+Y D++ HR+++ +I + +EI Sbjct: 537 YAAESLGHFGLSFQYYTHFTSPIRRYPDLVVHRIMREIITKKDLKEARQKKLQSKLEEIA 596 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 Q + R + AER+ D+ A +++ G D F + ++ G+ + L N Sbjct: 597 YQSSLREQEATEAERESVDYKMAEYMEQFVGDD--FPGIVSSVTSFGIFIELP-NLVEGL 653 Query: 589 IPAPFLHAVRDELVCSQENGTVQIK--GETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + D+ E I Y++ D + V + + E + V Sbjct: 654 VHVSSM---TDDYYYFDEEKFALIGEQTRKTYRIGDEVKVKVVKTSKEDCQVDFELV 707 >UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE Length = 705 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 172/639 (26%), Positives = 284/639 (44%), Gaps = 23/639 (3%) Query: 20 PRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELV 79 G V A GFGFLEV+ K +IPP +M KV HGD + A + K ++ +++ Sbjct: 66 EVVTGTVIAYPGGFGFLEVEGGKDIYIPPFEMVKVFHGDVVKAKVTEFKGKKEVRIIKVL 125 Query: 80 EPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKG 139 + V KV ++++ +VP I ++ + KEG+ V ++ + P K Sbjct: 126 KRAKKDIVAKVVFEDEQCYVVPLDENAHHRILL--SKKDCQKLKEGEVVVLKITQFPTKK 183 Query: 140 DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV--------RED 191 ++ + + + F+ V + ++NL P+ V E+ R D Sbjct: 184 S-PARGKVIEVLGNPKEKFIAIDVIIRKYNLPTSYPEKVIKEVEAIPEEIPEEEIKRRRD 242 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 L TID D DDA+ + P+ +L V IAD + ++ EG++ DK A R FT Sbjct: 243 LREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKRGFT 302 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 Y P + MLP +LS LCSLR NE + M G ++ + + + I SKA+L Sbjct: 303 YYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLK-AYDIYESVIRSKARL 361 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK 371 Y++ + + + + E +R++ + + R + D P+ I+ E Sbjct: 362 TYNEALALIVGDPALEKKFPNLVEPLRMMETLYRILSRKRWEMGSIDFDLPEAEVIVDEY 421 Query: 372 GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALL 431 GE I R +A+RI+E MI+AN A L +Y VH D + L +L Sbjct: 422 GEPTAIYPYERHVAHRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEKVENLLEIL 481 Query: 432 KTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLE 490 + G V T F K+ + + +P + R + A+ S HFGL LE Sbjct: 482 EGLGYKVKRPHEYTPKFFQKIIEDFEGRPEENLVRFLTLRAMARAKYSPHNVGHFGLALE 541 Query: 491 AYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-----DEITVQMAERRRLNRMAERDV 545 YA +TSPIR+Y D+I HRLLK ++GE + +E ++++ R+ AE + Sbjct: 542 HYAHFTSPIRRYPDIIVHRLLKKALRGEEIDYEKTLAYLEEAGNHLSKQERIADEAEMEA 601 Query: 546 GDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ 605 D+L AR++K + G + F I + G V L +N + L DE V + Sbjct: 602 IDYLKARYMKGRIGEE--FIGIITGVVAFGFFVELEENLVEGLVKINTL--TDDEYVFDE 657 Query: 606 -ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + V ++ V+++ D + V V E + + Sbjct: 658 PAHRLVGVRTGKVFRLGDHVKVRCIAVDEERARVEFELI 696 >UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR_HAEIN Length = 782 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 162/662 (24%), Positives = 272/662 (41%), Gaps = 36/662 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIAVIHS- 66 + + L + +G V +GFGFL+VD +K FIP QM++VMHGD ++A Sbjct: 80 KRKRYALPEKLDLFKGTVIGHREGFGFLQVDGKKDDLFIPNHQMQRVMHGDFVLAQPAGL 139 Query: 67 -EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 + R ++E + VG+ +N +VPD + I + + G Sbjct: 140 DRRGRREVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRIGRDILV--PNEHRNGARMG 197 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--- 182 V E++ ++ +T+ + + + L H++ + P V + Sbjct: 198 QVVVVELQERSASFNQPI-GVITEILGDNMAKGMEVEIALRNHDILHKFPSAVEKYVKKF 256 Query: 183 -----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 + R DL L VTID D DDA++ + +L VAIAD + ++ Sbjct: 257 TEEVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIADVSYYVRL 315 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S LD A R + Y P +PMLP LS+ LCSL R + C M +SA G + D Sbjct: 316 RSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQISAKGKLTD- 374 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 F+ A + S A+L Y +V+ LE + + + + L ++ Q RH + Sbjct: 375 YRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLSARHQRGAI 434 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + + +FI G + I R A +I+EE M ANI AA + +Y +H Sbjct: 435 DFETIETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANFMEKHKEPALYRIHA 494 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAE 476 + L GL ++ T + L ++ +P + + + R S A Sbjct: 495 TPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTMLLRSLSQAV 554 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR-------------- 522 + HFGL LE YA +TSPIR+Y D+ HR +K ++ E + Sbjct: 555 YHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDTGGYHYSFD 614 Query: 523 PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 D + + R A R+V DWL +++D G + F+ I ++ G+ VRL D Sbjct: 615 EMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGE--FSGVISSVTGFGLFVRLDD 672 Query: 583 NGAIAFIPAPFLHAVRDELVCS-QENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + L D + + Y++ D + + + V +E + + Sbjct: 673 LFIDGLVHISTLE--NDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHLENKMVDFS 730 Query: 642 PV 643 + Sbjct: 731 LI 732 >UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteria RepID=B5CPU6_9FIRM Length = 749 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 150/654 (22%), Positives = 271/654 (41%), Gaps = 30/654 (4%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHS 66 L++ + Q R G +A +GFGF+ V+ ++ FIP + GD + +I Sbjct: 104 LSKRGKYSKGQAKRIMGTFQANIRGFGFVMVEGQEEDIFIPAENVNGAFQGDEVECIITG 163 Query: 67 E--KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R+ + ++ +T+ VG + + PD+ I A + L+ Sbjct: 164 SPSGRRQEGKIVGIISHQVTKVVGLYEKSKSFGFVRPDNQRFLKDIYIPAGKELH--AMT 221 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD 184 G V E+ + + + ++ + + +D + ++ E P+ V + + Sbjct: 222 GHKVVVELTSYGGEHMKP-EGKIIEILGHVNDPGTDILSIVKDFDIPTEFPEKVLNQAVR 280 Query: 185 --------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + R DL VTID +D+DDA+ + + +L V IAD T ++ Sbjct: 281 VGKEVSEADMAGRMDLRDWQMVTIDGEDAKDLDDAVSV-VMDGENYRLGVHIADVTNYVQ 339 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S LD A R + YL IPMLP+ LS+ +CSL A E R L+C MT++ +G + D Sbjct: 340 ERSALDWEALKRGTSVYLADRVIPMLPQTLSNGICSLNAGENRLTLSCIMTVTPEGEVVD 399 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 + + I ++ Y+ V+ L + + + ++ E R Sbjct: 400 H-QIAETVICVDKRMSYNGVAKVLAGDAEALEADREFVPMILRMKELSDIIRERRAKRGS 458 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + D P+ + IL EKG ++I R A +I+E+ M+ AN A + +Y H Sbjct: 459 IDFDFPETKIILDEKGRPVEIKPYDRNDATKIIEDFMLLANETVAEEYFWREIPFLYRTH 518 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFA 475 D L + G ++ + KL +++ P L SR+ R A Sbjct: 519 DVPDEEKIRKLGTFINNFGYNLHVRNEVRPKEIQKLLCKVEGTPEEPLISRLALRSMKQA 578 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDEIT 528 + +TE HFGL + Y +TSPIR+Y D+ HR++K ++G E + E+ Sbjct: 579 KYTTENTGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKENLRGRLTGERMEHYRKILTEVA 638 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 Q ++R R +ER+V A +++ G + + I +++ G+ V L N Sbjct: 639 SQCSQRERTAEESEREVVKLKKAEYMQAHIGGE--YEGVISGVTKWGVYVELP-NTIEGL 695 Query: 589 IPAPFLHAVRDELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 I + D +E V +K+ + + + + R++ Sbjct: 696 IHVADMRD--DHYNFIEETYEMVGEHTGKTWKLGQKVQIRVTDADRLQRTVNFE 747 >UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_VEIPT Length = 764 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 165/656 (25%), Positives = 277/656 (42%), Gaps = 34/656 (5%) Query: 6 PLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIH 65 P + + + Q H + EG+ K K +GF+ + + ++ MH D++ I Sbjct: 32 PDVYRYEDQQHEE---YEGIYKGYRKSYGFVIMLDDEDIYVAEQNKGTAMHNDKVRVRIV 88 Query: 66 SE---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 K + +++E VG + +VPD + + L + Sbjct: 89 PSDYTKHKREGIIVDVIERANETIVGTYDRQQHFGFVVPDDERIGTDVFVDLKNTL--DA 146 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV--AT 180 + G + ++ + P +G++ +T+ + + D + +A H + P V A+ Sbjct: 147 RSGAKVLVKITKWP-EGNKKPEGIITEILGYKGDVGLDINCIMANHKIPFAFPKEVIEAS 205 Query: 181 EMLD----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 E +D E R DL L VTID +D+DDA+ + LP+ +L V IAD + ++ Sbjct: 206 EKIDTIVHEDPKRWDLRDLQMVTIDGEDAKDLDDAVSGRKLPNGNYELGVHIADVSHYVT 265 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 G +D A R + YL +PMLP LS+ +CSL A+E R + C M + GT+ Sbjct: 266 SGQPIDNEAYKRGTSVYLVDRVVPMLPEVLSNGICSLNAHEDRYAMTCMMEIDDSGTVV- 324 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 N + I + Y +V LE + +R LA+I + R Sbjct: 325 NYRIRPSIIHVGRRCSYKEVYKALEENI-IPDDLVDFIPMLRDLAEISKILNRMRRRRGA 383 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + D P+Y+ +L G L IV R +A R++EE M+ AN A LRD +Y +H Sbjct: 384 LDFDFPEYKVLLDLDGTPLRIVKRDRTMAERLIEECMLIANETVATHLRDTERTSVYRIH 443 Query: 417 MGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSF 474 D +L G ++ + +T F K+ + Q + + R Sbjct: 444 ENPSEEKLDLFQKVLNYLGQNLVISADGVTPRDFQKILDVVKGQDIEQVAQIMTLRSMQQ 503 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDE-----I 527 A+ S E HFGL Y +TSPIR+Y D++ HRLLKA + KG + R DE Sbjct: 504 AKYSIENVGHFGLASTCYTHFTSPIRRYPDLMVHRLLKADMHWKGGYSKRDVDEAFLAGA 563 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 + + ++ AER+ D +++ G F I I+ GM V L +NG Sbjct: 564 VEHSSIQEQVATEAERETTDLKKTQYMVPFVGE--VFEGTIASITSFGMFVEL-ENGIDG 620 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSIIAR 641 + ++ D+ E V + T Y + + + VT+ + +E + I Sbjct: 621 LVHISMMN---DDYYFFDEEHFVLVGKRTGKTYHLGEKVTVTLVKADVEKKQIDFV 673 >UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLT1_MOOTA Length = 770 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 171/658 (25%), Positives = 280/658 (42%), Gaps = 36/658 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEV--DAQKSYFIPPPQMKKVMHGDRIIAVIHSE-- 67 K L + G ++A+ +G+ F+ ++ +I + MHGD ++A + Sbjct: 55 KYGLPEKMGLVSGRLQASPRGYAFVVPLDKDREDLYIGALNINGAMHGDLVLARVLPGTT 114 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 R+ E +++ R VG + ++PD L I A G + E ++ D Sbjct: 115 GRRQEGEIIRVLQRVNKRVVGTFDATRNLDFVIPDDARLHQDIIIPA--GASLEARDRDK 172 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--- 184 V E+ R P + RS + Q + V + ++ LE E P V E + Sbjct: 173 VVVEITRWP-EARRSPEGRVIQVLGQTGAPGVDVLSIIKKYGLETEFPPEVIREAEEIPR 231 Query: 185 -----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 E R DL VTID A D+DDA+ + PD L V IAD + ++ EG Sbjct: 232 DLEPGELAKRRDLRDWRLVTIDGADARDLDDAVSLERRPDGSYLLGVHIADVSFYVREGR 291 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD+ A R + Y IPMLP LS+D+CSL A E R + MT+S GT++D E Sbjct: 292 PLDREAFNRGTSVYFVDRVIPMLPARLSNDICSLNAGEDRLAITALMTISPAGTVKD-YE 350 Query: 300 FFAATIESKAKLVYDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 F + I + ++ YD V LE+ + + +L+A++ R + Sbjct: 351 LFPSVIRVRERMTYDDVRRILEDKDPELMERYRELVPDFQLMARLAAILRRRRRRRGAID 410 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 D P+ + L ++G + I+ R +A I+EE MI AN AR L + +Y VH Sbjct: 411 FDFPEAKVKLDDQGLPVAIIPRHRTVAEGIIEEFMIVANEVVARHLYELAVPAVYRVHEE 470 Query: 419 FDPANADALAALLKTHGLHVDA--EEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFA 475 P +AL L GLH+ E + F ++ + +P + + + R A Sbjct: 471 PAPDKLEALNTFLAYFGLHIKPNREGRVRPRAFQEILAAVKGRPEERVISTVMLRSMMHA 530 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK--------AVIKGETATRPQDEI 527 + + HFGL Y +TSPIR+Y D++ HR+L+ + + + Sbjct: 531 RYAGDCLGHFGLASPYYCHFTSPIRRYPDLVVHRILRETWSPAGFSAERMAQLSAFVALA 590 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 VQ +ER +L AER+ D ++++ G FA I + G V L +N Sbjct: 591 AVQASEREKLAEEAERESLDMKKVQYMERHVG--ATFAGVISGVVPYGFFVEL-ENTVEG 647 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSIIARPV 643 + L D+ QE+ + T Y++ + V + V ++ R + V Sbjct: 648 LVHVSTL---TDDYYHYQEDQLALVGEHTGKSYRIGQPVTVLVTRVSVDARQVDFELV 702 >UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B2SQ32_XANOP Length = 842 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 192/663 (28%), Positives = 304/663 (45%), Gaps = 31/663 (4%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M ++ L+ + QT GVV A +GFGFL+ D F+PP +M+KVMHG Sbjct: 163 MVREAQLVQNRRGGYAPVQQTSLIAGVVIANPEGFGFLKPDGGGDDLFLPPFEMRKVMHG 222 Query: 58 DRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR +A + + R ++E ++R +G+ ++ + PD ++ + A Sbjct: 223 DRALANVTGIDRRGRREGAIARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQI--A 280 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 E +EG V E+ P R ++ + + + + H L E P Sbjct: 281 PDGIGEAREGQLVVCELIA-PPDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFP 339 Query: 176 DGVATEMLDEGLV--------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V E LV R DL + VTID +D DDA++ + D +L+VA Sbjct: 340 QEVLDEAAAVPLVVEPQMIGGRVDLRQMPLVTIDGEDAKDFDDAVYCEPNADG-FRLVVA 398 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ G+ LD A+ RA + Y PGF +PMLP LS+ +CSL R C M Sbjct: 399 IADVSNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQ 458 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQR 346 + DG + + F+ A + S A+L Y+QV + E D + + QV+ L Q+ Q Sbjct: 459 VGGDGEVTGS-RFYEAVMNSHARLTYNQVWKAVGEGDADTKAFIGPLLPQVQRLHQLYQV 517 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R + + + + RF+L GEV R A++++EE MIAAN+ AAR L Sbjct: 518 LSKARTHRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLS 577 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLD 465 Y VH + + L LK L + A + + KL +++ A+P L+ Sbjct: 578 MHVPAPYRVHERPPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLE 637 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA----- 520 S + R QS A S E HFGL LEAYA +TSPIR+Y D++ HR LK + G + Sbjct: 638 SVLLRSQSLAVYSPENNGHFGLALEAYAHFTSPIRRYPDLLVHRALKHALTGASPEKFIY 697 Query: 521 -TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 R +++Q +ER R AER+V + A +++ G +F I ++ G+ V Sbjct: 698 TPRQMAALSLQCSERGRRADEAEREVDERYRAAWMEKHVG--GQFDGVISGVTGFGLFVE 755 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSI 638 L + + L +D T+ + +++ D + V + + ME R I Sbjct: 756 LTQSKVNGLVHVTQLP--QDYYQFDPIRKTLSGERRGREFRLGDPVRVLVLKASMEERKI 813 Query: 639 IAR 641 R Sbjct: 814 DFR 816 >UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V602_9FIRM Length = 898 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 163/657 (24%), Positives = 263/657 (40%), Gaps = 38/657 (5%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVD-----AQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 L S+ G + + KGFGF+ D + F+P M MHGDR++A + Sbjct: 65 YGLPSRMNLVVGRLSMSPKGFGFIIPDVRETEEETDVFVPGSAMGTAMHGDRVVARVTPS 124 Query: 68 ---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 E ++E T VG + + PD + + + K Sbjct: 125 EQPGRAREGEIIRILERVNTHIVGTFERSKAFGFVTPDSTKIGRDVFV--LKKDFGGAKT 182 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE--- 181 G V E+ + P + RS + + + D V + ++L+++ P VA Sbjct: 183 GSKVVVEITKWPEQ-RRSAEGRVVEVLGKTGDPGVDVLAVMRAYDLDEKFPPDVAEAAAR 241 Query: 182 -----MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + +E R D VTID T+D+DD ++A D L V IAD + ++ Sbjct: 242 CPKDPLPEEYAGRRDRRDFPIVTIDGEDTKDIDDGVYA-YEKDGVFFLGVYIADVSHYVR 300 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 G LD+ A R + YL IPMLP+ELS+ +CSL R +AC M + DG + Sbjct: 301 AGEPLDREAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMEIGMDGEVR- 359 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 N E I +L Y V+ L + ++ I + L ++ + RH Sbjct: 360 NYEIVPCVIHVARRLTYTLVNKVLAGEEPFVSDNGDIRPMLETLRRLREVLRAKRHRRGS 419 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + + P+ + L G + + I I+EE M+AAN AR + K +Y VH Sbjct: 420 IDFELPEVKVKLDADGHPVALEKRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVH 479 Query: 417 MGFDPANADALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQS 473 + L +LL G LHVD + + ++ + QP + + R Sbjct: 480 ETPAAEKIERLQSLLAALGLRLHVDEDGKVRPSDIQQVLDRVKGQPEERIIGAVALRSMQ 539 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK--------AVIKGETATRPQD 525 A ST HFGL Y +TSPIR+Y D++ HRLL+ A K E Sbjct: 540 QARYSTASLGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIAAEKRERLRALLP 599 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 E + R R+ AER+ D ++ G + I ++ G+ V L +NG Sbjct: 600 EAAEHSSARERIAIEAERETTDMKKIEYMAQFVGE--TYEGVISGVTAFGIFVEL-ENGV 656 Query: 586 IAFIPAPFLHAVRDEL-VCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + V D + V + T Y++ D + + I ++ R++ Sbjct: 657 EGLVHVSTM--VNDYYSYIEDQYAMVGERTGTRYRLGDTVTIIITRADVQARTLDFV 711 >UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR Length = 818 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 168/665 (25%), Positives = 296/665 (44%), Gaps = 35/665 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHG 57 M +D +L + L + +G V GFGF++ + F+ +M KV HG Sbjct: 100 MVRDGQILRNRRGAFGLIQKMDLIKGKVIGHPGGFGFVQPEEGGGDLFLGDREMHKVFHG 159 Query: 58 DRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D++IA + K R E++E +G++ ++ + P++ + I Sbjct: 160 DKVIASVIGVDRKGRREGMIVEIIEHANQTILGRLHMEDGLGWVQPNNNRIAQDIFI--P 217 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + + +EG + E+ P K S ++ + + + + +++ E P Sbjct: 218 QDGLLDAEEGQIVMVEVIHQPTK-RSSAIGKIIEVVGDYLAPGMEIDSAIHAYDIPNEWP 276 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + ++ ++ R+DL +L VTID A ++D DDA+FAK + +L+VA Sbjct: 277 QELLDQLEAIPDEVTQEDKEGRKDLRSLPLVTIDGADSKDFDDAVFAKRRKNG-WRLVVA 335 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ EG+ LDK A R + Y P +PMLP +LS+DLCSL N R + C M+ Sbjct: 336 IADVSHYVKEGTPLDKEAYERGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVCDMS 395 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-EAIAEQVRLLAQICQR 346 + DG + + +F+ A + SKA+L YDQV + L + G ++ + + V L + + Sbjct: 396 IDNDGKL-ERTQFYDAVMNSKARLTYDQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEI 454 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D + R + E ++ IV R A++++EE M+ AN+ AR L+ Sbjct: 455 LKGARSERGALEFDTTETRIVFDEHRKIEKIVPVVRNEAHKLIEECMLMANVATARYLKW 514 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLD- 465 +Y VH L L GL ++ + + + + + QP L Sbjct: 515 HKIPMLYRVHEKPSEERLKNLRTFLGDFGLTLEGGDEPDANDYATITEAVKGQPHEHLVG 574 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK------AVIKGET 519 + + R + A + HFGL E YA +TSPIR+Y D++ HR ++ V K + Sbjct: 575 TVLLRSMNQAVYQPDNLGHFGLNYEYYAHFTSPIRRYPDLLIHRAIRFAWTKQDVSKFKY 634 Query: 520 ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 + + + + R A RD +L FL + G + + A + + G+ V Sbjct: 635 SEKDMKALGEHCSGTERRADEATRDAVTFLKCEFLSHRLGEE--YDAVVTAATNFGLFVE 692 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET---VYKVTDVIDVTIAEVRMETR 636 L + L E + +KGE VY++ D + V +A+V ++ R Sbjct: 693 LEPLYVEGLVHITEL----GEDYFHYDASRHCLKGERTGKVYRLGDKLRVQVAQVNLDDR 748 Query: 637 SIIAR 641 I R Sbjct: 749 KIDLR 753 >UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX9_9FIRM Length = 766 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 157/702 (22%), Positives = 267/702 (38%), Gaps = 79/702 (11%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHS 66 +++ + ++T G+ KGFGF+ V+ ++ FIP + +HGDR+ V+ Sbjct: 59 VSKKGKYGKAETFSVNGIFSGHPKGFGFVTVEGMEQDVFIPEDKTGAALHGDRVQIVVEH 118 Query: 67 EKERE-------------SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 + ++E VG Q + ++PD+ L I Sbjct: 119 DSRMSGSRSGMGSGGRRAEGAVIRVLEHANQEIVGYYQKNKNFGFVIPDNQKLAKDIFI- 177 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 +G + G V ++ + + +T+ I +D + + L + Sbjct: 178 -PQGCDMGAVTGHKVVVKITDFGSEKHKP-EGRVTEIIGHVNDPGTDILSIVRAYGLPEA 235 Query: 174 APDGVATEMLD-------------------------------------------EGLVRE 190 P V E+ D E R Sbjct: 236 FPQEVMEEIEDIPEDVTVPGQPYVPGQTDIPGQPAKPGSPYGISDLTSHDGWGGELSGRL 295 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL L VTID +D+DDA+ L V IAD + ++ EGS LD+ A R+ Sbjct: 296 DLRGLQTVTIDGEDAKDLDDAVTICRDNQGHYILGVHIADVSHYVKEGSPLDREAFKRST 355 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + YL IPMLP +LS+ +CSL A R L+C M + GT+ D+ I + Sbjct: 356 SVYLVDRVIPMLPHKLSNGICSLNAGTDRLALSCIMEVDGQGTVLDH-RIAETVIHVDRR 414 Query: 311 LVYDQVSDWLENTGDW-QPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG 369 + Y V+ + + + E E + ++ E R + D P+ + +L Sbjct: 415 MTYTAVNAIVTDRDEAVMAEYEDFVPMFDCMKELADILRESRRKRGAIDFDFPESKIVLD 474 Query: 370 EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAA 429 +G+ L+I R A RI+E+ M+ AN A + +Y H DP L Sbjct: 475 GQGKPLEIKPYERNAATRIIEDFMLLANETVAEDYYWQSIPFLYRSHDNPDPEKMKQLGT 534 Query: 430 LLKTHGLHVDAEEV-LTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEISTEPGPHFGL 487 + G + + + KL +++ P L SR+ R A+ +T+ HFGL Sbjct: 535 FINNFGYFIKMQHGEIHPKELQKLLDKIEGTPEEALLSRLTLRSMKQAKYTTQCSGHFGL 594 Query: 488 GLEAYATWTSPIRKYGDMINHRLLKAVIKGETA-------TRPQDEITVQMAERRRLNRM 540 Y +TSPIR+Y D+ HR++K +KG + + E+ VQ + R Sbjct: 595 ATRYYTHFTSPIRRYPDLQIHRIIKETLKGGLSDKRAGHYEKILPEVAVQTSALERRADE 654 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AER+ ++ G D F I ++ G+ V L N + + + D+ Sbjct: 655 AERETDKLKKCEYMSRFIGQD--FDGAISGVTNWGLYVELP-NTVEGLVR---MSDLDDD 708 Query: 601 LVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 E + + YK+ I VT++ R++ Sbjct: 709 YYIFDEQHYELIGEMTKKTYKLGQPIRVTVSSTDRLLRTVDF 750 >UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID=RNR_VIBPA Length = 835 Score = 610 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 158/677 (23%), Positives = 278/677 (41%), Gaps = 43/677 (6%) Query: 1 MFQDNPLLAQLKQ--QLHSQTPRAEGVVKATEKGFGFLEVDA----QKSYFIPPPQMKKV 54 M +D L+ +Q L + +G V + G G++ + +P QMK + Sbjct: 66 MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDDDILLPHHQMKNI 125 Query: 55 MHGDRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC 112 +HGD ++ S++ R ++E ++ VG+ + +VPD + I Sbjct: 126 IHGDFVLVQPTDNSKRGRREGRLVRVLEERNSQIVGRFFLEYGYSYVVPDDSRISQDILI 185 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 + G+ V E+ + R ++ + + + + + H + Sbjct: 186 --PNEHKAGARMGNVVVIEITDRGSR-SRGMMGKVVEVLGENMAPGMETQIAIRTHQIPY 242 Query: 173 EAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 E P+ V +++ + + R DL L VTID D DDA+F + D +L Sbjct: 243 EWPEAVEKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRL 302 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 VAIAD + ++ S LDK A R + Y P +PMLP LS+ LCSL R + C Sbjct: 303 WVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 362 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 MT+S G + + + + A + S A+L Y +VS LE + + + + + L + Sbjct: 363 EMTISESGKL-SSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAMY 421 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + E R + + + +FI + ++ I R A++I+EE MI ANI +A ++ Sbjct: 422 KVLKEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASLV 481 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGF 463 +Y +H L GL + + + L R++ Q Sbjct: 482 EKAKEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQEL 541 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---- 519 + + + R A + + HFGL L+ YA +TSPIR+Y D++ HR +K +I E Sbjct: 542 IQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQ 601 Query: 520 -----------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 + D Q + R A R+V DWL +++D G + I Sbjct: 602 DRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDE--LEGVI 659 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKG--ETVYKVTDVIDV 626 +++ G VRL D + L ++ G I +Y++ D + V Sbjct: 660 ANVTSFGFFVRLTDLHIDGLVHISTL---ANDYYQFDPIGQRLIGESFGNIYRLGDAVKV 716 Query: 627 TIAEVRMETRSIIARPV 643 + V ++ + I V Sbjct: 717 KVLAVNLDDKQIDFELV 733 >UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepID=RNR_VIBCH Length = 821 Score = 610 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 152/677 (22%), Positives = 279/677 (41%), Gaps = 43/677 (6%) Query: 1 MFQDNPLLAQLKQ--QLHSQTPRAEGVVKATEKGFGFLEVDA----QKSYFIPPPQMKKV 54 M +D L+ +Q L + +G V + G G++ + + +P QM+ + Sbjct: 66 MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125 Query: 55 MHGDRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC 112 +HGD ++ ++ R+ ++E + VG+ + +VPD + I Sbjct: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILI 185 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 L + G+ V E+ + +R ++ + + + + + H + Sbjct: 186 --PNDLRAGARMGNVVVIEITDRGTR-NRGMMGKVVEVLGENMAPGMETQIAIRTHQIPH 242 Query: 173 EAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 E P V ++ + R DL AL VTID D DDA++ +A +L Sbjct: 243 EWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRL 302 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 VAIAD + ++ + LDK A R + Y P +PMLP LS+ LCSL R + C Sbjct: 303 WVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 362 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 MT+S G + + + A + S A+L Y +V + LE + + +A+ + L ++ Sbjct: 363 EMTVSETGKL-SGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMY 421 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 Q R + + + +FI + ++ I R A++++EE MI ANI +A ++ Sbjct: 422 QVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLV 481 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GF 463 +Y VH L GL + + + L +++ +P Sbjct: 482 EKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKEL 541 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---- 519 + + + R A + + HFGL L+ YA +TSPIR+Y D++ HR +K +I + Sbjct: 542 IQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQ 601 Query: 520 -----------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 + D Q + R A R+V DWL +++D G + + Sbjct: 602 DRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEE--LEGVV 659 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKG--ETVYKVTDVIDV 626 +++ G VRL + + L ++ G + +Y++ D + V Sbjct: 660 ANVTSFGFFVRLTELHIDGLVHISTL---ANDYYHYDPIGQRLVGESFGAIYRLGDAVKV 716 Query: 627 TIAEVRMETRSIIARPV 643 + V ++ R I V Sbjct: 717 KVLAVNLDDRQIDFELV 733 >UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFK4_9NEIS Length = 964 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 163/661 (24%), Positives = 285/661 (43%), Gaps = 29/661 (4%) Query: 1 MFQDNPLLAQLKQQL--HSQTPRAEGVVKATEKGFGF---LEVDAQKSYFIPPPQMKKVM 55 M +D +L + + + + V+ + GFGF L + + Q + VM Sbjct: 83 MARDGQILINRRNLVCAAEKLEIVKCRVEMHKDGFGFAVPLIPTGEGDLVLYERQTRGVM 142 Query: 56 HGDRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 +GD + + R + +++E T VG+ + + P+ L + Sbjct: 143 NGDIVTVRPLGLDRRGRREGQILDIIERAQTSIVGRFYLERGIAVLDPEDKRLTQNVILE 202 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 EG VAE+ +P + R A +T+ + D + + L +H L E Sbjct: 203 PDSVAQFAPGEGQVVVAEITAYP-ENHRPAVARITEVLGDYADSGMEIEIALRKHKLPHE 261 Query: 174 APDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 G + R DL L VTID ++ D DDA+FA+ + + +L+ Sbjct: 262 FSAGCLKAAAKIPEKVRASDRKNRVDLRDLPLVTIDGETSRDFDDAVFAEKIGRN-YRLV 320 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 VAIAD + ++ +D+ A+ RA + Y P IPMLP LS+ +CSL + R + C Sbjct: 321 VAIADVSHYVKPDDAIDQDAQERATSVYFPRRVIPMLPENLSNGICSLNPDVERLCMVCD 380 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 + ++ G I+ + F+ A ++S +L Y+QV +W+ Q +EQ+ L ++ + Sbjct: 381 IEITFAGNIK-SYRFYPAVMKSHGRLTYNQVWEWI-----SQKTQNPYSEQLNTLYKLFK 434 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + RH + + + + + + G++ I+ R A++++EE M+AAN+CAA L Sbjct: 435 ILQKKRHARGAMEFETSETQMLFNDNGKIDRIIPVVRNDAHKLIEECMLAANVCAADFLL 494 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFL 464 +Y H G P AL L GL + + T + L ++ + L Sbjct: 495 KNKHPALYRNHAGPTPEKLAALREQLGLLGLKLGGGDNPTPKDYAALADQIAERDDRELL 554 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + + R A+ HFGL E Y +TSPIR+Y D++ HR +KAV+ G Sbjct: 555 QTMLLRSMQQAQYEPHNAGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLAGTQYQADW 614 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 + + R A RDV +WL +++DK G FA +I ++ G+ V L D Sbjct: 615 QALGAHSSHCERRADDASRDVENWLKTYYMRDKVGE--VFAGKISGMANFGIFVTLDDIH 672 Query: 585 AIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L D E + + +K+ D + + +A ++T I V Sbjct: 673 IEGMVHVSDLG--EDYFNYHPETLSMIGERSGVQFKMGDRVVIKVARADLDTSKIDLVLV 730 Query: 644 A 644 + Sbjct: 731 S 731 >UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH Length = 793 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 157/656 (23%), Positives = 270/656 (41%), Gaps = 36/656 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKE 69 + L + +G +A E+GFGF+ + ++ FIPP ++K M+GD + A I K Sbjct: 62 RYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKG 121 Query: 70 RE--SAEPEELVEPFLTRFVGKVQGK-NDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 +++VE T+ VG ++PD L + GL +G Sbjct: 122 DNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKP--VDGH 179 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEG 186 + E+ + G + I +D V + +H + P+ V ++ Sbjct: 180 KVIVELTEYAT-GHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAP 238 Query: 187 LV--------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 V R DL +TID A +D+DDA+ LP+ +L V IAD T ++ EG Sbjct: 239 DVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEG 298 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S LD A+ R + YL IPMLP +LS+ +CSL R ++C M + +G + ++ Sbjct: 299 SPLDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNH- 357 Query: 299 EFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 E F + I++ ++ Y V+D L EN + + I + + + + R + Sbjct: 358 EIFESIIKTTERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAI 417 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 D + R ++ E G +V R ++EE M+AAN A IY +H Sbjct: 418 DFDFKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHE 477 Query: 418 GFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQSFA 475 + GL V + ++ E+ +P + + + R A Sbjct: 478 DPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQA 537 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG--------ETATRPQDEI 527 + T HFGL + Y +TSPIR+Y D+I HRL++ + E EI Sbjct: 538 KYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 ++ R AER+ + F+ DK G RF I ++ G+ + L Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGE--RFIGIISSVTNFGLFIELP-TTIEG 654 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSIIAR 641 + + + + +N I T +Y++ D ++V + +V ++ R I Sbjct: 655 LVHVSAM---KGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFA 707 >UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1SWZ6_PSYIN Length = 656 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 267/649 (41%), Positives = 406/649 (62%), Gaps = 10/649 (1%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL+QLK+Q+ P+ +G VKAT++G+GFLE D K +FIPP +MKKV+HGD+I Sbjct: 1 MFQNNPLLSQLKKQIQEDIPKRQGKVKATDRGYGFLETDKGKRFFIPPSEMKKVLHGDQI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 A I + ++ +AEP +L + F+ ++ K ++I+P +PLLK + ++ L Sbjct: 61 NAFIRGKGDKSTAEPNQLKKTGSAVFIARLVIKQKNISIIPKNPLLKGFFKIKGSQSLQS 120 Query: 121 -EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD-GV 178 +++GDW E+ H L+G+ F ++ + I D F +T+A HNL +AP+ Sbjct: 121 RGYQDGDWVKVELVSHALEGN-GFLTQIIEKIADASDPFAYRLLTVATHNLANKAPEFDH 179 Query: 179 ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 +++D L R DLT F TID +T+DMDDAL+ +A ++ +L VAI+DP+A++ E Sbjct: 180 PWKIIDPQLSRSDLTKTPFFTIDGVNTQDMDDALYIEA-DENGWKLTVAISDPSAYVPEN 238 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S +D AK RAFT YLP FN+PMLPR+LSD LCSL+ E R L C + ++ G IE Sbjct: 239 SDMDAEAKRRAFTLYLPNFNVPMLPRDLSDSLCSLKEGEKRATLCCTIHINKKGEIEGEP 298 Query: 299 EFFAATIESKAKLVYDQVSDWLEN---TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 F+ A I+S +L Y VS++LEN + D S +AEQ+R L + +R +WR ++ Sbjct: 299 AFYGAWIKSHYRLNYTDVSNYLENEELSNDCWKPSTQLAEQLRTLDSLSLKRLQWRTDNN 358 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 VFK++PDY L KGE+ +I+ EPRR ANR+VEE+MIAANICA L G++N Sbjct: 359 AVFKNQPDYTLKLNNKGEISEILCEPRRSANRLVEESMIAANICAGDFLAKHKQQGVFNT 418 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFA 475 H GF + +LL G+ D + + T+ G+ K+R++ + +LD R+R+ S+A Sbjct: 419 HSGFSSERLGKVVSLLSEFGIESDIQTLATVTGYTKIRQQTNLLHNSYLDHRLRKLLSYA 478 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERR 535 +I P HF LG++ YATWTSPIRKYGD++NHRL+K+V+ E + +EI + R Sbjct: 479 DIKNTPEAHFTLGVDHYATWTSPIRKYGDLLNHRLIKSVLLKEDNIQIDNEIGQVLNAAR 538 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL- 594 +L R+AERDV + LY+++LK++ + R+ AEI DI + G+RV++ +NGA FIP L Sbjct: 539 KLQRLAERDVNNILYSQYLKNQVESKWRYKAEIFDIIKAGIRVKIQENGATFFIPCSLLC 598 Query: 595 --HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + ++ C+Q G V I +T ++ DVIDV + V++E+ +I + Sbjct: 599 KDSSDATKIDCNQALGKVIIAQQTELQLGDVIDVMLNNVKVESGQLIGK 647 >UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9P5_9FIRM Length = 769 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 155/644 (24%), Positives = 270/644 (41%), Gaps = 33/644 (5%) Query: 21 RAEGVVKATEKGFGFLEV---DAQKSYFIPPPQMKKVMHGDRIIAVI--HSEKERESAEP 75 G ++ T+KG+GF+ + FIP + M+ D +IA + H R + Sbjct: 70 LVTGRLQVTQKGYGFVVPLEKTEEGDLFIPAMHLSGAMNEDLVIARVSDHGYGGRREGKV 129 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 ++E RFVG D + PD+ + I R LN + GD V ++ Sbjct: 130 IRILERAHERFVGTFTRSGDFGFVTPDNRHIGQDIYVRRKDFLN--ARNGDKVVVKITVW 187 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--------DEGL 187 P G + +T+ + D + + +L + P V + Sbjct: 188 PN-GRQKAEGTITEILGKKGDVGIDIISIIKDKDLPLDFPKEVKEAAQLVPQVIPKKDLK 246 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R D +T+D ++D+DDA++A+ +D L V IAD + ++ +LD+ A Sbjct: 247 GRLDRRKWPIITVDGVDSKDLDDAIYAEKRGED-YFLGVYIADVSHYVRPRGELDREAYA 305 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + YL +PMLP LS+ +CSL E R ++C M +S + + + I S Sbjct: 306 RGTSVYLVDRVLPMLPPLLSNGICSLNEGEERLTMSCEMVISGKTGKVLSYDIAPSVIAS 365 Query: 308 KAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 + ++ Y V+ L + + + I + + ++C + R + + P+ + Sbjct: 366 RHRMNYPDVAKILTDRDTALREKYSDIVPMLETMEELCTILHKKRVRRGAIEFEIPEVKV 425 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 IL EK +D+ R IA ++EE M+AAN A + IY VH D + Sbjct: 426 ILDEKKRPIDVHLRHRTIAEMMIEEFMLAANETVAAHMTKHHYPFIYRVHDVPDEDRMQS 485 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHF 485 L+ ++ G + E + R++ +P G + + R A TE HF Sbjct: 486 LSKIMAQFGTVLKIEGKMRPKVLQMALRKVKGKPEEGMISTLALRSMKQAVYQTENVGHF 545 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE--------ITVQMAERRRL 537 GL + Y +TSPIR+Y D++ HRLLK G+ ++ + E + + R RL Sbjct: 546 GLAAKDYTHFTSPIRRYPDLLVHRLLKEQRTGQKLSKKEKENLNDKLSLMASHASTRERL 605 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 AER+ + ++ G + F I ++ GM V+L +NG + L + Sbjct: 606 AIEAERETDELKMTEYMLPYVGQE--FDGTISGVTSFGMFVQL-ENGIEGLVHISSL--L 660 Query: 598 RDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 D +E+ V G Y++ + + + V +E R I Sbjct: 661 DDYYRYDEEHFALVGEHGGKSYRLGSPVRIKVFHVSVEERKIDF 704 >UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6K9_GRAFK Length = 732 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 149/657 (22%), Positives = 273/657 (41%), Gaps = 35/657 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEKER 70 K ++ S GV+ T KG+G++ V+ FI + GD + + + + R Sbjct: 71 KFKIESNKNYYTGVLDLTTKGYGYVMVEEFADDIFIANKDLNTAFDGDTVEIYVFNRRRR 130 Query: 71 ESAEPE--ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 + +E E ++++ T FVG +Q K D +V D + + + + GD Sbjct: 131 KRSEGEITKIIKRKRTEFVGTLQQKKDFGFVVIDDKSMHTDFFIPGNK--LNGAENGDKV 188 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------ 182 V E P K D ++T+ + +H LA++ L + P+ V Sbjct: 189 VVEFEEWPKKADSPL-GKITRVLGTPGEHHTEIHSILAQYGLPHDFPEEVEEFANKIDTS 247 Query: 183 --LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 +E R D+ + TID +D DDAL + L + ++ + IAD + ++ G+ Sbjct: 248 INKEEISKRRDMRDVLTFTIDPKDAKDFDDALSFEKLKNGNYEIGIHIADVSHYLQPGTI 307 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD+ A RA + YL +PMLP LS++ CSLR E + + + + T+++ F Sbjct: 308 LDEEAYERATSVYLVDRVVPMLPEILSNNACSLRPKEEKFTFSAVFEIDDNATVKNQW-F 366 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPES-----------EAIAEQVRLLAQICQRRGE 349 S + Y++ LE P+ A+ E V L + ++ Sbjct: 367 GRTVTYSDERFAYEEAQHILETGTGTIPDDVSIRNHAYSVRGALIEAVVTLNTLAKKMRT 426 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 R + D+ + +F L E + + + + AN+++EE M+ AN A + + Sbjct: 427 RRMKDGAISFDKVEVKFNLNEDNNPVGVFFKTAKDANKLIEEFMLLANRKVAEYIGKQSP 486 Query: 410 --FGIYNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDA-QPTGFLD 465 +Y H D +L ++ G ++ ++ T KL ++ + +D Sbjct: 487 KKTFVYRNHDEPDDQKLASLQTIVGRFGHKLNLKDRSSTTSSLNKLLEDVQGRKEQNMVD 546 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET--ATRP 523 + R S A TE H+GL + Y +TSPIR+Y D++ HRLL+ + G + Sbjct: 547 TLAIRTMSKAYYGTESIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDGAKSASEEE 606 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 + +E L AERD ++ +F++D + F I ++ G+ V +V+N Sbjct: 607 YETKCHHSSEMENLATNAERDSIKYMQVKFMQDH--ENEEFLGVISGVTEWGIFVEIVEN 664 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 I ++ E + E V + Y + D + V + + R + Sbjct: 665 KCEGMIRLRDMNDDHYEF-NADEFSVVGKRTGQTYTLGDEVYVKVKNADLIKRHLDF 720 >UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=B5EJB3_ACIF5 Length = 746 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 169/664 (25%), Positives = 277/664 (41%), Gaps = 30/664 (4%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M +D L+ + + G V A GFGFL + K F+ P +M+KV HG Sbjct: 71 MERDGQLVRNRRGAYGIVEAMELVRGTVSAHPDGFGFLIPEGGGKDLFLSPREMRKVFHG 130 Query: 58 DRII--AVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D I+ AV + R ++E L + VG+ + +VP+ + Sbjct: 131 DTILGRAVGEDRRGRIEGAIVRILERALKQVVGRYYAEGGVRYVVPEDRRIPQEFAV--V 188 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 G G E+ ++P G + + + + + + + L + P Sbjct: 189 EGGELAPVHGQIVTLEITQYP-DGRNMPQGCVVEILGEHMAPGMEVEIAVRNYGLPHQWP 247 Query: 176 DGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 D V E+ R DL AL VTID A +D DDA++A+ + + +LIVA Sbjct: 248 DEVLAEITHFSETVPEAIKEGRRDLRALPLVTIDGADAKDFDDAVYAEEIENG-FRLIVA 306 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD ++ S LDK A R + Y P IPMLP LS+ LCSL + R + C M Sbjct: 307 IADVATYVRPDSALDKEAATRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMLCEME 366 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 G ++ F + S+ + YD+V+ L D + A+ + +L ++ + Sbjct: 367 TDLTGEVQ-RFRFARGVMRSQRRFTYDEVAAILAGDEDLRTRDAAMVPHLEVLHRLYESF 425 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + R + D + R I E+ + IVA R +A+RI+EE M+AAN+CAA+ R Sbjct: 426 AKARERRGTIEFDSQESRIIYNEQARIEKIVAVTRNVAHRIIEECMLAANVCAAQYFRIH 485 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDS 466 +Y VH + L L G+ V + + + + + + Sbjct: 486 ELPMLYRVHPEPSGDKLEDLRRFLGELGVPVRLPTHPRSADLASIIEDTRERSDSSLIQT 545 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------A 520 I R S A + + G HFGL AY +TSPIR+Y D++ HR ++A++ Sbjct: 546 VILRSLSQAYYTVDTGMHFGLAFLAYTHFTSPIRRYPDLVVHRGIQALLDAAGAEPRWFP 605 Query: 521 TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + E+ + R A R+ +WL F+ DK G + I ++ G+ V L Sbjct: 606 QKVLQELGQHCSMTERRADEASREAVNWLKCEFMMDKVGE--TYTGIITGVTGFGLFVAL 663 Query: 581 VDNGAIAFIPAPFLHAVRDELVCS-QENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 + I L D Q + + + +++ D I + +A V ++ R I Sbjct: 664 REIYVEGLIHISTLG--EDYFHFDAQHYRIIGDRTKETFQLGDEIQIRVANVNLDDRKID 721 Query: 640 ARPV 643 V Sbjct: 722 FERV 725 >UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT23_9FIRM Length = 704 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 146/652 (22%), Positives = 271/652 (41%), Gaps = 29/652 (4%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE 67 + K G ++ ++KGFGFL + + +I + ++GD +I + + Sbjct: 52 KKAKLIFVDNKTYFFGKIQTSKKGFGFLITENLDEDIYISEENLNFALNGDDVIVKKYKD 111 Query: 68 --KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 + + +VE + VG Q + +V D I R + K G Sbjct: 112 SSGSKPEGKVVFIVERVNQKVVGIFQATKNFGFVVADDAKFATDIYIPKKR--MNGAKNG 169 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML-- 183 + ++ + P G + + + + + D+ V ++ E V E Sbjct: 170 QKVLVKIDKWPSPGKKP-EGRVLEILGYPDEPHVDILSVAKSLDIPMEFSKTVKREAKSL 228 Query: 184 ------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 +E R DL TID A ++D DDA+ + L + L V IAD ++ E Sbjct: 229 ETSVQAEEIKSRLDLRDKLTFTIDGADSKDFDDAVSLEILENGNYLLGVHIADVAHYVKE 288 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S +D+ A +R + YL IPMLP ELS+ +CSL R L+C M + G + + Sbjct: 289 DSPIDEEAFLRGNSVYLLNKVIPMLPFELSNGICSLNEGVDRLTLSCIMEVDKKGQVINK 348 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 + + I SK +LVYD VSD+LE+ G + E ++ + ++ + E R + Sbjct: 349 -KICESVINSKKRLVYDYVSDYLED-GVSDDSLIGLEETLKNMYELSKILQEKRREMGSI 406 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + P+ + E G +I+ RR AN+++E+ M+ AN A +Y +H Sbjct: 407 DFEVPEALIKVTEDGWPTEILRRERRSANKLIEDFMLLANTTVAEYFFKFEIPFLYRIHE 466 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAE 476 L + L+ G + + KL +++ + F+ + R + A Sbjct: 467 KPREEKIQELNSYLRPLGYMANFGSEIKSRDIQKLLKKVQGKKEELFISTMALRAMAKAR 526 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-------ITV 529 S + HFGL + Y +TSPIR+Y D+ HR++K ++G+ + + I+ Sbjct: 527 YSPKNDIHFGLCFQYYTHFTSPIRRYADLTVHRIIKDFLRGDLSKNKVKKLNDDLQGISE 586 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 ++ R+ + AER V A ++ D+ G ++ I I+ G+ V L +N + Sbjct: 587 HISATERVAQEAERQVESIKMAEYMSDRIGK--KYNGIISGITNFGIFVEL-ENLIEGLV 643 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + + V + + + + D++ + + V + I Sbjct: 644 SYKTMKGFYEFDPVNYRA--VDVDTKNSFGIGDLVTIKVVNVNLTLGKIDFE 693 >UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6WZE5_FLAB3 Length = 718 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 156/645 (24%), Positives = 281/645 (43%), Gaps = 39/645 (6%) Query: 21 RAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEKERE-SAEPEEL 78 G + + G +++V+ FI +K + GD+++ V + K ++ E+ Sbjct: 85 TVSGTIDFNQAGNAYVKVEEFDDDVFIHSKNVKDALQGDQVLIVTYHFKGKKLEGSVLEV 144 Query: 79 VEPFLTRFVGKVQ--GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 ++ FVG Q D +V D + I +G ++GD V +M Sbjct: 145 IKRNREEFVGTFQLINHKDFGFVVCDKKTINTDIFV--PKGKIGGAQDGDKVVVKMTDW- 201 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLV 188 G+++ E+ + + +H LA + L P V E D E Sbjct: 202 KSGEKNPEGEIIKVLGAPGEHETEIHSILAEYGLPYSFPAEVEKEADDIDRTIHDSEVAK 261 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D+ + TID +D DDAL + L + ++ V IAD + ++ G+ LD A R Sbjct: 262 RRDMRGICTFTIDPKDAKDFDDALSIQKLNNGNWEIGVHIADVSHYVQPGTLLDDEAYDR 321 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 A + YL +PMLP LS+D+CSLR NE + + + + + + F I S Sbjct: 322 ATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFEMDENADVVNEW-FGRTVIHSD 380 Query: 309 AKLVYDQVSDWLE-NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 + Y++ + +E TGD AE++ L ++ + + R + + DR + RF Sbjct: 381 RRFAYEEAQERIETGTGDL-------AEEILTLDRLAKILRKERIRNGAITFDRSEVRFN 433 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG------FGIYNVHMGFDP 421 L E E + + + + +N ++EE M+ AN + + IY +H DP Sbjct: 434 LDENSEPIGVYFKISKDSNHLIEEFMLLANRKVSEFISLNRKGEPTANTFIYRIHDDPDP 493 Query: 422 ANADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAEIST 479 +AL + T G +D A + +L +++ + +++ R S A ST Sbjct: 494 TKLEALRDFVGTFGYQMDLANTKKVAESLNRLLQDVKGKGEENMIETLAMRSMSKAVYST 553 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD--EITVQMAERRRL 537 P H+GLG + Y+ +TSPIR+Y D+I HRLL+ + G + QD E + + RL Sbjct: 554 NPIGHYGLGFDFYSHFTSPIRRYPDLIAHRLLQHYLDGGKSPNKQDYEEKSKHCSAMERL 613 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 AERD ++ +F++ G + F I ++ G V++ +NGA I L + Sbjct: 614 AADAERDSIKFMQVKFMEKHLGEE--FTGVISGVADFGFWVQIPENGAEGLIKLRDL--M 669 Query: 598 RDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 D +N V + +++ D + + + + + + + + Sbjct: 670 DDSYSYDPKNHLVHGARTGNQFQLGDKVRIKVMKANLIQKQLDFK 714 >UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9X2_9GAMM Length = 831 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 182/657 (27%), Positives = 293/657 (44%), Gaps = 30/657 (4%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVI--H 65 Q + + + G V A ++G+GF + + FIPP M ++MHGD+I+A + Sbjct: 84 RQGRFGVARKMDLISGFVVAHQEGYGFFSPENGEPDGFIPPKYMAELMHGDKILARVKDT 143 Query: 66 SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 E+ R+ P E++E R VGK+ + +++PD+ L + A K G Sbjct: 144 DERGRKDYAPVEILERAQKRIVGKLAVQQGVWSLLPDNRRLTHHLIIPA--DALGGGKAG 201 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT--EML 183 + E+ +P + + ++ + + + + HN+ P+ V E + Sbjct: 202 QVVIGEITAYPSRFQQPI-GKVVAVLGEAMAAGMEVDIAIENHNIPAVFPEAVREQCEKI 260 Query: 184 DEGLV------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 + L R DL L FVTID S D DDA++A+ ++ +L VAIAD ++ Sbjct: 261 PDALRDQDYEGRLDLRHLPFVTIDGISARDFDDAVYAEKRGEN-YRLYVAIADVAHYVRP 319 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S LD A R + Y P IPMLP +LS+ LCSL N R + C +TL+ DG+I+ + Sbjct: 320 DSPLDIEAYNRGTSVYFPDRVIPMLPEKLSNGLCSLNPNVDRLAMVCEITLAPDGSIKRS 379 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQ-VRLLAQICQRRGEWRHNHAL 356 F A I S A+L Y+ V + L ES A ++ + L + R ++ Sbjct: 380 A-FHDAVIHSHARLTYETVEEILFLDNQMVRESFAALQRPLDNLKTVYGILRAARLARSV 438 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + + FI +G++ I A R ++R++EE MIAANICAA+ + +Y VH Sbjct: 439 IDFHASEPEFIYDSEGKIETIQARARLESHRLIEECMIAANICAAKYIGRHKLPALYRVH 498 Query: 417 MGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSF 474 L L G+ + T F L + +P ++ + R S Sbjct: 499 DHPSAERLGKLIDFLGKRGIKWQGALDNATPAQFSALLAQCADRPDFAQIEIMVLRSMSQ 558 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------ATRPQDEIT 528 A E HFGL LE YA +TSPIR+Y D++ HR ++ ++G T + E Sbjct: 559 AIYIPENRGHFGLALEHYAHFTSPIRRYPDLLVHRAIRHQLQGGTRDNYRYSAESMVEKG 618 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + R A RD D+L F+ + G F I +I+ G V L D Sbjct: 619 KHCSMTERRADEATRDAMDFLKCEFMSHRIGE--TFTGRIANITNFGFFVTLDDIYIDGL 676 Query: 589 IPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 + L D S E T+ + T + + D +++ +A+V +E R I +A Sbjct: 677 VHVSAL--TNDYYHYSAETFTLNGERSGTRFALMDAVEIQVAKVDIEERKIDFELLA 731 >UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCCDEB Length = 900 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 162/657 (24%), Positives = 265/657 (40%), Gaps = 38/657 (5%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDAQK-----SYFIPPPQMKKVMHGDRIIAVIHSE 67 L S+ G + + KGFGF+ DA++ F+P + MHGDR++A + Sbjct: 65 YGLPSRMNLVVGRLSMSPKGFGFIIPDARENEEETDVFVPGAALATAMHGDRVVARVTPS 124 Query: 68 ---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 E ++ T VG + + PD + I + K Sbjct: 125 ESPGRAREGEIIRILVRANTHIVGTFERSKAFGFVTPDSTKIGRDIFV--LKKDFGGAKT 182 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE--- 181 G V E+ + P + RS + + + D V + ++L++ P VA Sbjct: 183 GSKVVVEITKWP-EARRSAEGRVIEVLGKTGDPGVDVLAVMRAYDLDENFPPDVAAAAAQ 241 Query: 182 -----MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + +E R D VTID T+D+DD ++A D + L V IAD + ++ Sbjct: 242 CPENPLPEEYAGRRDRRDFPIVTIDGEDTKDIDDGIYAYER-DGEFFLGVYIADVSHYVR 300 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 G LD A R + YL IPMLP+ELS+ +CSL R +AC M + ADG ++ Sbjct: 301 AGEPLDVEAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMQIGADGEVK- 359 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 + E I +L Y V+ L + ++E I + L ++ + RH Sbjct: 360 SYEIVPCVIHVARRLTYTLVNKVLAGEEPFVSDNEDIRPMLETLRRLREVLRGKRHRRGS 419 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + + P+ + L G + + I I+EE M+AAN AR + K +Y VH Sbjct: 420 IDFELPEIKVKLDAAGHPIALERRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVH 479 Query: 417 MGFDPANADALAALLKTHGLHVDAEE---VLTLDGFCKLRRELDAQPTGFLDSRIRRFQS 473 + +LL GL ++ +E V + D L R A + + R Sbjct: 480 EAPVSEKIERFQSLLAALGLRLNVDEDGKVRSRDIQQVLDRVKGAPEERIIGAVALRSMQ 539 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-GETATRPQD------- 525 A +T HFGL Y +TSPIR+Y D++ HRLL+ G ++ Sbjct: 540 QARYATASLGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIPAEKRERLRTVLS 599 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 E + R R+ AER+ D ++ G F I ++ G+ V L +NG Sbjct: 600 EAAEHSSARERIAVEAERETTDMKKIEYMAQFVGE--TFEGVISGVTAFGIFVEL-ENGV 656 Query: 586 IAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + V D +E V + Y++ D + + I ++ R++ Sbjct: 657 EGLVHVSTM--VNDYYSYVEEQYAMVGERTGARYRLGDAVTIIITRADVQARTLDFV 711 >UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM3_9FIRM Length = 755 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 159/648 (24%), Positives = 275/648 (42%), Gaps = 34/648 (5%) Query: 21 RAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVI---HSEKERESAEPE 76 +AEG KGFGF+E++ Q + FIP MH D++ +I E +R+ Sbjct: 109 QAEGTFIGHPKGFGFVEIEGQDEDIFIPESDTGTAMHQDKVRIIIRNDKKEGKRQEGVVV 168 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 +++E + VG Q D ++ D+P I K GD + + + Sbjct: 169 KVLERGMPEIVGTYQLNRDFGFVISDNPKFSKDIFIPRKEAA--GIKNGDKVIVVITDYG 226 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLV 188 G+++ ++ + + + + E P+ V + + Sbjct: 227 S-GNKNPEGKIKENLGNIRTPGTDILAIVKSFGIPSEFPEKVMKQAQRVPDHVLDADRDG 285 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL L VTID +D+DDA+ D L V IAD + ++ S LD+ A R Sbjct: 286 RLDLRHLQTVTIDGEDAKDLDDAISLTK-EGDIYHLGVHIADVSNYVQYNSALDREALKR 344 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL +PMLP LS+ +CSL E R L+C M ++ G + + + I Sbjct: 345 GTSVYLADRVVPMLPERLSNGICSLNQGEDRLALSCLMDINEKGKVVSH-QIAETVINVN 403 Query: 309 AKLVYDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 ++ Y V + LE+T + + EA+ ++ ++ RH+ + D P+ + I Sbjct: 404 ERMCYTDVKNILEDTDEEAKKRYEALIPMFFMMKELSGILRNSRHHRGSIDFDFPESKII 463 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 L G+ +D+ +A +I+E+ M+ AN A+ + +Y H DP ++L Sbjct: 464 LNAAGKAIDVKPYEANVATKIIEDFMLMANETVAQEYCTEEIPFVYRTHDNPDPEKVESL 523 Query: 428 AALLKTHGLHV-DAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEISTEPGPHF 485 LL G+ + A+E +T ++ ++ P + SR+ R A+ +TE HF Sbjct: 524 LTLLHNQGVKIQKAKEEITPKEIQQIIESIEGLPNEAMISRLVLRSMKQAKYTTECSGHF 583 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKG--------ETATRPQDEITVQMAERRRL 537 GL + Y +TSPIR+Y D+ HR++K ++G E DE+ Q + R Sbjct: 584 GLAAKYYCHFTSPIRRYPDLQIHRIIKDNLRGRLMREGRTEHYAEILDEVARQSSVCERR 643 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 AER+ A ++ G + F I ++ G+ V L N + L Sbjct: 644 ADEAERESDKLKKAEYMSYHLGEE--FEGIISGVTGWGLYVELP-NTVEGLVHVNTLRD- 699 Query: 598 RDELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 D + QE + VYK+ D + V +A+ +++ VA Sbjct: 700 -DYYIFDQETYELRGEMTKKVYKLGDKVCVRVADADKMLKTVDFELVA 746 >UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXP1_HALNC Length = 803 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 166/643 (25%), Positives = 267/643 (41%), Gaps = 29/643 (4%) Query: 19 TPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVIHS--EKERESAEP 75 G V GFGFL D F+ P M+ +++GDR + + + R Sbjct: 87 AELVRGRVLGHRDGFGFLVPDDGGDDVFLSPRVMRALLNGDRAVVQVTGLDRRGRREGNL 146 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 E++E VG++ + +VPDH + I ++G + Sbjct: 147 VEVIERANAEIVGRLVLEAGIAFVVPDHARITQDILV--PMTDLMGARDGQIVRVALVEQ 204 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGL 187 P + ++ + + + V + H + E P+ V + Sbjct: 205 PTLRHKP-VGKVVEVLGDHMSPGMEIDVAINSHGIPHEWPEEVLAAIDGLNPEVEESHKS 263 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL ++ VTID A ++D DDA+F +A P+ +L+VAIAD + ++ GS LD+ Sbjct: 264 GRVDLRSMPLVTIDGADSKDFDDAVFCQAAPEG-FRLLVAIADVSHYVNVGSALDREGFN 322 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 RA + Y PG +PMLP LS+ LCSL R L M ++ +G I FF ++S Sbjct: 323 RATSVYFPGRVLPMLPEVLSNGLCSLNPAVDRLCLCADMLINNEGHI-AKFRFFEGVMKS 381 Query: 308 KAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 A+L YD V+ L + + + + E + L + + R + D + + Sbjct: 382 AARLTYDTVAKVLVDQDAEARAAHAHLLEPLETLHGVYKVLRSARERRGAIDFDTVETKI 441 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 + GE ++ IV R A++I+EE MIAAN+ A R + D +Y VH Sbjct: 442 VFGEGRKIEAIVPYERNDAHKIIEECMIAANVAAGRFVADHKIPALYRVHDRPTAEKITD 501 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQSFAEISTEPGPHF 485 L A+L GL + + + F L ++ + + + I R A S + HF Sbjct: 502 LRAMLAEKGLSLGGGDQPSPKDFNALLSQVQGRADFLTIQTMILRSLKQAVYSPDNLGHF 561 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA---TRPQDE---ITVQMAERRRLNR 539 GL E YA +TSPIR+Y D++ HR ++ +++ DE I + R Sbjct: 562 GLAHEFYAHFTSPIRRYPDLMVHRAIRHLLRTGAPDRFPYNHDEMVIIGEHCSNNERRAD 621 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 A RD DWL F+ DK G F + + G+ V L D + L +D Sbjct: 622 EATRDATDWLKCEFMLDKVGE--VFEGRVASVLGFGLFVELKDFFVEGLLHITAL--TKD 677 Query: 600 ELVCSQ-ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + VY + D I V +A V ++ R I Sbjct: 678 YYHFDPVTLSLRGERSGRVYALNDAITVRVARVDLDERKIDFV 720 >UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR_THEMA Length = 710 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 160/645 (24%), Positives = 274/645 (42%), Gaps = 36/645 (5%) Query: 24 GVVKATEKGF-GFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE-KERESAEPEELVEP 81 G ++ T G+ F+ D + +P K MH DR++ I + ++E Sbjct: 72 GTIEFTRSGYVAFVITDDFEEIAVPVEDTKYAMHKDRVVVEITGTWRGLPRGRVVRVLER 131 Query: 82 FLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDR 141 L R VG K +VPD P + K +AE+ ++P G + Sbjct: 132 GLKRVVGVFDHKGTFGFVVPDDPKIAYDFYVAPEN--IDGAKPNQKVIAEILKYPSPG-K 188 Query: 142 SFYAELTQYITFGDDHFVPWWVTLARHNLEK--EAPDGVATEM--------LDEGLVRED 191 + A++ + + DD + + +H+L + E P+ V E + + R+D Sbjct: 189 NPEAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREANAIPARVRKKDLVGRKD 248 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 L VTID +D DDA+ + LP+ L V IAD + ++ EGS LD+ A R + Sbjct: 249 LRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTS 308 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 YL IPMLP LS+ +CSL + R ++ M + DG + + + + I+SK ++ Sbjct: 309 VYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVV-RYDVYPSVIKSKKRM 367 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV-FKDRPDYRFILGE 370 +Y++V+++LE+ + E E + + ++ + E R + + + + IL E Sbjct: 368 IYERVNEFLEDPSSMK-EYEPFKDLIYNAVELAEILREARRKRGAILDIESDEVKVILDE 426 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 G+V+DIV R IA +++EE MI AN A + +Y VH DP L Sbjct: 427 NGQVVDIVPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDPETIFQLKNY 486 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAEISTEPGPHFGLGL 489 L+ G+ + KL ++ P R+ R A S HFGL Sbjct: 487 LEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAVNIGHFGLAS 546 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKG---------ETATRPQDEITVQMAERRRLNRM 540 AY +TSPIR+Y D++ HRLLK ++ E ++ +I + R R+ Sbjct: 547 YAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEKFSKVLPKIAKHCSRRERVADE 606 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AE D+ ++ G F + +I++ G+ V + + + L D+ Sbjct: 607 AEWDLVAMKKVEYIARHIGE--VFNVVVTNITKFGLFVEIPEKSISGLVHISTL----DD 660 Query: 601 LVCSQE--NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 E N + + V+++ DV+ + I V Sbjct: 661 YYYYDETRNMLIGKRKGKVFRLGDVLKAKVVRADKIRGEIDFVLV 705 >UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A2L6_PELCD Length = 720 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 164/662 (24%), Positives = 288/662 (43%), Gaps = 31/662 (4%) Query: 2 FQDNPLLAQLKQQLHS---QTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMH 56 D L+ ++++ L S + G V +G+GF+ + Q FIP M++VM Sbjct: 46 LADEGLVRRVRKGLFSLPRSSEMVVGKVSVHRQGYGFVIPEAAGQADVFIPARYMREVMD 105 Query: 57 GDRIIAVI-HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 GDR+ + S + ++ VG + + ++P P L I + Sbjct: 106 GDRVAVRVQRSSRGGYEGRVLRVLSRAHQTIVGTYRPGHGYGMVLPSDPALSHGIMLLSP 165 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + GD V + ++P + + + + D V + NL +E Sbjct: 166 --APGDAHAGDLVVVSIAQYPGR-REPPRGVMVEVLGDPADPQVEILAAAYKFNLPREFS 222 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + ++ REDL + FVTID + +D DDA+ P ++L VA Sbjct: 223 TATLEQARSIAPVVREEDLAGREDLRSTLFVTIDGETAKDFDDAVAVSREPGGCMRLWVA 282 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD ++A S +D+ AK R + Y PG +PMLP LS+ +CSL R VL M Sbjct: 283 IADVGHYVAPDSPIDRDAKERGTSVYFPGSCLPMLPEALSNGICSLNPGVDRLVLTAEML 342 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQVRLLAQICQR 346 G + ++ FF A I SKA+L Y +V+D L P S+ + Q+ ++++ R Sbjct: 343 FDKQGVMLES-RFFHAVICSKARLTYREVADVLAAGAIHNPALSDPLISQLHHMSELASR 401 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D P+ +L +G I+ R +A+R++EE M+AAN A+ L D Sbjct: 402 LQAMRFRRGSLDFDLPEPEIVLDLQGRPDQILRAERTVAHRLIEEFMLAANEAVAKFLSD 461 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDAQPTG-FL 464 + +Y +H + A L + + ++ ++ + + +P + Sbjct: 462 RNIPLLYRIHESPEVEKLFAFQTFLAHLNIGLVVTDDSVSPTVLQGVLETVRDRPEERMV 521 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---KGETAT 521 + + R A S++ HFGL + Y +TSPIR+Y D++ HR+L + K +AT Sbjct: 522 NQFLLRSMKQARYSSDNLGHFGLASDCYCHFTSPIRRYPDLVVHRILSRALSTSKRSSAT 581 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 +E+ +++ R AERD+ +F+ DK G F A + D+ G+ V L Sbjct: 582 VNLEELGDLTSQKERRAMEAERDIVALRRCQFMADKVG--QVFDACVADVQPFGIFVELK 639 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQE--NGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 D + L D+ E + V + ++++ +V+ V + +V +E R + Sbjct: 640 DVFVEGLVHVATL---TDDYYEFDEELHRLVGQRRRKIFRIGEVVTVQLVKVNLERRELD 696 Query: 640 AR 641 Sbjct: 697 FE 698 >UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 Length = 715 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 140/654 (21%), Positives = 265/654 (40%), Gaps = 38/654 (5%) Query: 13 QQLHSQTPRAEGVVKATEKG-FGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERE 71 +L+ GV + G F+ D ++ FI M+ D++ + ++++ Sbjct: 75 YKLNDHGLIMTGVFQRKSNGKNSFIPDDGGETIFIAERNSAHAMNNDKVKIALFAKRKNR 134 Query: 72 --SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 E E++E FVG ++ + ++ ++ L + I + K GD AV Sbjct: 135 NPEGEVIEILERANDTFVGTLKVEKFYAFLLTENRTLANDIFI--PKDKLKGGKNGDKAV 192 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD----- 184 ++ P + ++ ++ + ++ LA L P V T Sbjct: 193 VKIVEWPEEA-KNPIGQVIDILGKAGENTTEMHAILAEFGLPYVYPKNVETAAEKIPAEI 251 Query: 185 ---EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + RED + TID +D DDAL + + ++ V IAD T ++ EG + Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGGVI 311 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK A+ RA + YL IPMLP L + +CSLR +E + + ++ G ++D+ Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDS-RIV 370 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 I+S + Y++ +E E++ L ++ Q + R + DR Sbjct: 371 HTIIKSDRRFTYEEAQKVIETGEG------DYKEEILELNKLAQILRKQRLAAGAIDFDR 424 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-----RDKLGFGIYNVH 416 + +F + E G+ L + + + AN+++EE M+ AN A + K Y +H Sbjct: 425 VEVKFEIDETGKPLSVYFKESKEANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFPYRIH 484 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLT--LDGFCKLRREL-DAQPTGFLDSRIRRFQS 473 DP + L + G + T +L ++ + + +++ R Sbjct: 485 DLPDPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQ 544 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--TRPQDEITVQM 531 A ST H+GL + Y +TSPIR++ DM+ HRLL + G +E+ Sbjct: 545 KARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAGGRTVQEAKYEELCDHS 604 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 +E ++ AER + F+ ++ G + F I ++ G+ V L +N IP Sbjct: 605 SEMEQIAANAERASVKYKQVEFMGERLGME--FDGVISGVTEWGLYVELNENKCEGMIP- 661 Query: 592 PFLHAVRDELVCSQENGTV--QIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + D+ E + + + D + + +A +E + + V Sbjct: 662 --MRDLGDDYYDFDEKNYCLTGRRHHKKFSLGDPVTIKVARANLEKKQLDFALV 713 >UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RRW9_9CLOT Length = 748 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 159/670 (23%), Positives = 258/670 (38%), Gaps = 61/670 (9%) Query: 22 AEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE----KERESAEPE 76 G+ KGFGF+ V+ ++ FIP + +HGDR+ V+ S+ R Sbjct: 73 VNGIFCGHPKGFGFVTVEGMEQDVFIPEDRTGAALHGDRVQIVVESQDRGGGRRAEGSVL 132 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 +++E VG Q ++PD+ + I +G + G VA ++ Sbjct: 133 KVLEHANKEVVGYYQKSKGFGFVIPDNQKISKDIFI--PQGCDMGAVTGHKVVARIKEFG 190 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---LDEGLV----- 188 + +T+ + +D + + L +E P V E+ DE V Sbjct: 191 DANHKP-EGVVTEILGHVNDPGTDILSIVRAYGLPEEFPPEVMDEVEGCPDEVAVPGMTR 249 Query: 189 --------------------------REDLTALDFVTIDSASTEDMDDALFAKALPDDKL 222 R DL L VTID +D+DDA+ Sbjct: 250 DEETWDGPYGIGDLTSPADWTGDLAGRLDLRGLRTVTIDGEDAKDLDDAVTLCRNGQGGY 309 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 L V IAD + ++ EG LDK A R + YL IPMLP +LS+ +CSL A R L Sbjct: 310 ILGVHIADVSHYVKEGRPLDKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGTDRLAL 369 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLA 341 +C M L G + D+ + I ++ Y V+ + + E E L+ Sbjct: 370 SCIMELDDQGNVLDH-KIAETVIHVDRRMTYTAVNAIVTDGDEAVMAEYEGFVPMFMLMK 428 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 ++ E R + D P+ + IL +G+ L+I R A +I+E+ M+AAN A Sbjct: 429 EVSDILREKRKKRGAIDFDFPESKIILDAQGKPLEIKPYERNAATKIIEDFMLAANETVA 488 Query: 402 RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV-LTLDGFCKLRRELDAQP 460 + +Y H DP L + G + ++ + KL +++ P Sbjct: 489 EDYFWQSLPFLYRTHDNPDPEKMKQLGTFIHNFGYFIRLQQGEIHPKELQKLLDKIEGTP 548 Query: 461 TGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-- 517 L SR+ R A+ +T HFGL Y +TSPIR+Y D+ HR++K +KG Sbjct: 549 EEVLLSRLTLRSMKQAKYTTLCSGHFGLAARYYTHFTSPIRRYPDLQIHRIIKESLKGGL 608 Query: 518 -----ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 + +Q + R AER+ ++ G + F + ++ Sbjct: 609 GDKRAGHYEAILPGVAMQTSALERRAEEAERETDKLKKCEYMSRFIGQE--FDGVVSGVT 666 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAE 630 G+ V L N + L RD+ E V +K+ I V +A Sbjct: 667 NWGLYVELP-NTVEGLVRISEL---RDDYYIFDEQHYELVGEMTRKTFKLGQPIRVQVAS 722 Query: 631 VRMETRSIIA 640 R++ Sbjct: 723 TDRLLRTVDF 732 >UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_ALCBS Length = 828 Score = 593 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 178/687 (25%), Positives = 282/687 (41%), Gaps = 56/687 (8%) Query: 1 MFQDNPLLAQL--KQQLHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMH 56 M +D L+ K + S+ G V+ + GFGFL D Q F+ P QM+ VM Sbjct: 76 MLRDAQLVQNRNGKVGVVSRMDLIAGRVQGHKDGFGFLIPDDKTQGDLFLAPRQMENVMD 135 Query: 57 GDRIIA--VIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 GDR++ ++ ++ A E+ E T +G+ + I P++ + + Sbjct: 136 GDRVLVSNAGYNRFGKKEARIVEITERVATEVIGRYSREAGISFIEPENRRITKEVLIED 195 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 G+ GD A + ++P + D L + I D+ + V L R + Sbjct: 196 KNGIKP--NPGDHVRATITQYPSR-DHHVLVRLEEIIATPDEAGMEVEVALRRFEIPHVW 252 Query: 175 PDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 P+GV + R DL L VTID + D DDA++ + P +LIV Sbjct: 253 PEGVEAAAEKFGDKVPHEPKAHRVDLRDLPLVTIDDETARDFDDAVYVERRPRGGWRLIV 312 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 AIAD + ++ GS+LD+ A R + Y P IPMLP LS+ LCSL + R L C M Sbjct: 313 AIADVSHYVQPGSELDQEAAKRGNSVYFPNRVIPMLPEALSNGLCSLNPHVDRLCLYCDM 372 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE------SEAIAEQVRLL 340 +SA+G + I F + S+ +L Y++V +E + + + + Sbjct: 373 KISANGRLTRFI-FREGVMRSRHRLTYNKVGAIIEEPESELAQDTVASLDDESLDMIWSF 431 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 ++ R + D D R I E ++ IV R +A+ ++EEAM+AANIC+ Sbjct: 432 HEMFLALRRRRAERGAIDFDSDDTRIIYDENKKIEAIVPVQRNVAHIMIEEAMLAANICS 491 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDG--FCKLRRELDA 458 A++L +Y H L L GL + E F LR E+ Sbjct: 492 AKLLEKAGVPALYRNHEPPKEERLSKLQQFLGGLGLSIAWSEGAAPKPYVFQDLREEILE 551 Query: 459 QPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 +P + + + R S A+ E HFGL +AY +TSPIR+Y D++ HR ++ +I+ Sbjct: 552 RPDRNVIQTMMLRTMSQAKYEAENKGHFGLAYKAYTHFTSPIRRYPDLLVHRAIRFLIRS 611 Query: 518 ETATRPQD----------------------EITVQMAERRRLNRMAERDVGDWLYARFLK 555 D I Q + R A RDV WL +F++ Sbjct: 612 NGEPNHVDNPGNLPEIPRQKILPYNQADMVAIGEQCSMTERRADEATRDVVSWLKCQFME 671 Query: 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIK-- 613 G F I ++ G+ V+L D + L + + E Sbjct: 672 AHLG--QVFEGAISGVASFGLFVQLSDLHIDGLVHVANLDS---DYYHFDEVSLTLTGES 726 Query: 614 GETVYKVTDVIDVTIAEVRMETRSIIA 640 + + D + V +A V E R I Sbjct: 727 TGRQFGLGDAVTVCVAAVHTEDRKIDL 753 >UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=B0S130_FINM2 Length = 701 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 158/647 (24%), Positives = 275/647 (42%), Gaps = 33/647 (5%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEK---ERE 71 ++ G ++ + F + D + FI + +H D+++ I EK Sbjct: 63 TEQKAYPGTIQGSGSDFCYFIPDDENVDDIFIAKKDLNGAIHKDKVLVTITVEKKPNRSP 122 Query: 72 SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 + +++ + VG ++ D + ++ G + K D V + Sbjct: 123 EGKVLQILSRETKKLVGTFDEAKGYGFVILDDKKYGFDVFVQS--GNKNGAKNNDKVVVK 180 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD------- 184 + + P K ++ + + + DD + + L E P V + + Sbjct: 181 LIKTPSKNHKNPEGVIVEVLGGKDDPGIDIYSIAKTFKLPYEFPKKVKQQAKEIEQHVDE 240 Query: 185 -EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 E R D L V+ID + +D DDA+ ++ L V IAD + ++ + + LDK Sbjct: 241 SEKKSRMDFRDLLTVSIDGSDAKDFDDAISITKKGEN-FVLYVHIADVSHYVKKNTALDK 299 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A R + Y+ IPMLP ELS+ +CSL NE R L +M +S G D +F+ + Sbjct: 300 EAFRRGTSVYMLDRVIPMLPVELSNGICSLNPNEDRLCLTIKMEISPTGKTLD-YKFYES 358 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I S +L+Y VSD+LE+ D E E + + + L+ ++ + R + D P+ Sbjct: 359 VINSDYRLIYKNVSDFLEDI-DNPYEDEKLTDNLLLMKELYEILSARRKKRGSIDFDFPE 417 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + IL E +V+D+ + RRI N+++EE M+ N A +Y VH D Sbjct: 418 TKIILDENSKVIDVTKDERRIGNKLIEEFMLITNETVASHFGYLDRPFLYRVHEEPDEEK 477 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPG 482 + +L G H+ + + + + ++ ELD +P L S + R AE S P Sbjct: 478 VNTFKRILSNFGYHLKGKNLYS-KDYQRILNELDGKPEKPLLASLLLRSMQKAEYSENPS 536 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-------ITVQMAERR 535 HFGL Y +TSPIR+Y D+ HR++K I + T + E I Q + Sbjct: 537 IHFGLASMFYTHFTSPIRRYPDLFIHRIVKNFINHKPDTNNEKEFMKYIKDIAKQCSATE 596 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 R AER+ D A +++ D F I +++ G+ V+L DN + + Sbjct: 597 RRAEEAEREAIDMKSAEYMQQHI--DEEFEGIISSLTKFGIFVQL-DNTIEGLVQFQSM- 652 Query: 596 AVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + D V ++N TV + + Y + + V + + R I Sbjct: 653 -IDDYYVFDEKNYTVYGERTKKSYHIGQKVRVKVINSDKDKRQIDFE 698 >UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVE2_DICNV Length = 752 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 163/645 (25%), Positives = 289/645 (44%), Gaps = 29/645 (4%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIH--SEKERESA 73 + G V A +G+GFL V+ FIPP M+++MHGD+I+A I + R+ Sbjct: 89 HKMDLVSGYVIAHPEGYGFLNVEGDIDDGFIPPQYMRELMHGDKILARIKHVDGQGRKDY 148 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 P E+++ R VGK+ +++P++ L I + + +AE+ Sbjct: 149 VPVEILQRGQKRVVGKLLNNQGIFSVIPENRRLTQPIMI--PKAALGDAVANQIVLAEIT 206 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------E 185 +P K ++ + + + + + + +N+ D V ++ + Sbjct: 207 AYPSKHQQAI-GTIVKVLGDEMAAGLEVAIAIENYNIPNHFSDAVRAQIEKMPDALQEAD 265 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 + R DL L VTID S D DDAL+A+ ++ +L VAIAD + ++ S LD+ A Sbjct: 266 YVDRLDLRYLPMVTIDGISARDFDDALYAEKRGEN-YRLFVAIADVSYYVKPDSPLDEEA 324 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 R + Y P +PMLP +LS+ LCSL + R L C +T++ G I+++ +F A I Sbjct: 325 YARGTSVYFPDRVVPMLPEKLSNGLCSLNPHVDRLCLVCELTITPSGQIKNS-KFHQAVI 383 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAE-QVRLLAQICQRRGEWRHNHALVFKDRPDY 364 +S A+L Y+ V L ES A + L + Q R + D + Sbjct: 384 QSHARLTYETVEKILFLQDPLMQESFAQLRAPLEDLRVVYQILRTAREKRQAIRFDFKEA 443 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 F+ +G++ I A + +++EE M+ AN+ AA+ L+ G+Y VH Sbjct: 444 EFLFDSEGKIESIQARNELESYQLIEECMVIANVAAAKFLQKHKLIGLYRVHDKPSAERF 503 Query: 425 DALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPGP 483 + + G + + +T++ F L ++ + Q L+ I R A S+E Sbjct: 504 EKVFNYFAKLGFKTPSFDTVTVEHFAHLLKKAEGRQDRALLEKMILRSLPQALYSSENRG 563 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT------RPQDEITVQMAERRRL 537 HF L L YA +TSPIR+Y D++ HR ++ ++ E++ DE+ + R Sbjct: 564 HFALALSHYAHFTSPIRRYPDLLVHRAIRHCLQEESSEVSLYSLEKMDEMAKHCSMTERR 623 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 A RD D+L F+ + G + F EI ++ G+ + L + + L + Sbjct: 624 ADDASRDAMDFLKCEFMSHRIGDE--FFGEISSVTSFGLFITLDEFFIDGLVHVSTLPS- 680 Query: 598 RDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 D +N + + Y++ D + + + +V +E + I Sbjct: 681 -DYYHYDADNVRLLGERSGHSYQLMDKVRIRVVQVNIEDKKIDFE 724 >UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z970_EUBR3 Length = 716 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 153/656 (23%), Positives = 260/656 (39%), Gaps = 30/656 (4%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHS 66 L++ + S+ + GV A ++GFGF+ V+ + FIP + MH D + I Sbjct: 68 LSKRGKYSKSEIKKTVGVFTAHQRGFGFVTVEGEPDDIFIPAEYVNGAMHMDTVEITISP 127 Query: 67 --EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R+ + ++E + + V + ++ VPD+ I R + Sbjct: 128 VTTGRRKEGKVVSVIERGMKQVVCTYEASDNFGFAVPDNTRFGTDIFIPKER--SKGAMS 185 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD 184 G V E+ + K + ++ + I DD + ++L + + + ++ + Sbjct: 186 GHKVVVEITSY-GKKGKKPEGKVVEIIGHIDDPGTDILSIVKAYDLPVDFSEKIMHQVQN 244 Query: 185 --------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + R DL VTID +D+DDA+ + D L V IAD + ++ Sbjct: 245 VAKDVTPADMAGRMDLRDWMMVTIDGEDAKDLDDAVSL-YMDGDNYVLGVHIADVSNYVQ 303 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S LD A R + YL IPMLPRELS+ +CSL R L+C MT++ G + D Sbjct: 304 EHSALDVEALKRGTSVYLVDRVIPMLPRELSNGICSLNEGCDRLALSCIMTINKKGEVID 363 Query: 297 NIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + + I++ ++ Y V L + E + + +A++ + R Sbjct: 364 H-KIAETVIKTNRRMTYTNVKKILADKDAAVIEEYKELVPMFEKMAELAAILRKKRMKRG 422 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + D P+ + +L E G +DI R +A +++E+ M+ AN A + +Y Sbjct: 423 SIDFDFPETKVVLDEDGHPIDIKPYDRNVATKLIEDFMLIANETVAEDYFWQEIPFVYRT 482 Query: 416 HMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQS 473 H D L+ + G + + + KL ++D L SR+ R Sbjct: 483 HDKPDSEKIAKLSTFINNFGYTLHIGADEVHPKELQKLLMKVDGTDEESLISRLTLRSMK 542 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDE 526 A +T HFGL Y +TSPIR+Y D+ HR++K I+G E D Sbjct: 543 QARYTTACTGHFGLAANYYCHFTSPIRRYPDLQIHRIIKENIRGRMNDNRREHYESILDA 602 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + Q +E R AER+ ++ + G F I ++ G V L N Sbjct: 603 VAKQASETERRAEEAERETVKLKKCEYMSNHIGEC--FEGVISGVTEWGFFVELP-NTVE 659 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + L E YK+ I V + R+I +P Sbjct: 660 GLVRVTDLTDDFYEFY-EDTYELAGTATNKRYKLGQKIKVVVDSADKIMRTIDFKP 714 >UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RHS0_PORG3 Length = 731 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 149/630 (23%), Positives = 260/630 (41%), Gaps = 33/630 (5%) Query: 35 FLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERE--SAEPEELVEPFLTRFVGKVQG 92 F+ FI M GD++ + +++ A E++E FVGK+Q Sbjct: 115 FIPEGGGTPIFIAERNSAHAMDGDKVKVQLFAKRRGRAPEAAVIEIIEQKQATFVGKIQI 174 Query: 93 KNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYIT 152 D +V + L + I N K GD + + P + ++ E+ + Sbjct: 175 NRDFAFLVTEDRTLANDIFIPKDNLGN--AKNGDKVIVRILEWPEQ-SKNPIGEVQAVLG 231 Query: 153 FGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSAS 204 D+ LA L P V +E RED ++ TID Sbjct: 232 PAGDNDAEMNAILAEFGLPYVYPQEVEEAADRLDGKITEEELARREDFRSVLTFTIDPKD 291 Query: 205 TEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPR 264 +D DDA+ + L DD ++ V IAD + ++ EG +D+ A RA + YL IPMLP Sbjct: 292 AKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGIIDQEAYNRATSIYLVDRTIPMLPE 351 Query: 265 ELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTG 324 L +DLCSLR +E + +C ++ + + D + I+S + Y++ +E Sbjct: 352 RLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLD-YRICHSVIKSDRRFAYEEAQAVIETGE 410 Query: 325 DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRI 384 E + L ++ QR E R + + +R + RF + EKG L ++ + + Sbjct: 411 G------DCKEAILKLNELAQRLREERFQNGAIAFERKEVRFEIDEKGRPLGVIVKESKE 464 Query: 385 ANRIVEEAMIAANICAARVLRD-----KLGFGIYNVHMGFDPANADALAALLKTHGLHVD 439 AN+++EE M+ AN AR + + + +Y +H DP + L+ ++ G + Sbjct: 465 ANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDLPDPDKLETLSDFIRRFGYKLR 524 Query: 440 --AEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWT 496 + L + +P + + R + A ST+ H+GL + Y +T Sbjct: 525 TTGSNMEVSKSINSLLDNIQNKPEENLISTVAIRSMAKAIYSTDNIGHYGLAFDFYTHFT 584 Query: 497 SPIRKYGDMINHRLLKAVIKGETA--TRPQDEITVQMAERRRLNRMAERDVGDWLYARFL 554 SPIR+Y D++ HRLL + G ++ +E + +L AER + F+ Sbjct: 585 SPIRRYPDLMVHRLLTKYLSGGSSVDKNDYEEKCKHSSAMEQLAASAERASIKYKQVEFM 644 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKG 614 + G F I ++ G+ V L +N IP L E + + Sbjct: 645 SEHLGK--VFDGVISGVTEWGLYVELKENMCEGLIPIRCLDDDYYEYDDKNF-CLIGRRY 701 Query: 615 ETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 Y + D I V +A+ ++ + + PV+ Sbjct: 702 RHRYSLGDAITVRVAQANLDRKQLDFEPVS 731 >UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni RepID=D0J279_COMTE Length = 882 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 156/687 (22%), Positives = 278/687 (40%), Gaps = 67/687 (9%) Query: 14 QLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVI--HSEKER 70 ++ G V+ G GF+ D ++ ++PP +M+ V+H D++ I H + R Sbjct: 11 KVADMNEEILGTVQGHRDGHGFVVRDDGERDIYLPPNEMRAVLHKDKVQVRIARHDHRGR 70 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 E+VE +G+ ++ + P+ + K G V Sbjct: 71 PEGRVVEIVERPDQPIIGRFLQESGVWLVAPEDKRYGQDVLI--PSNATGAAKPGQVVVV 128 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-------- 182 E+ P + +T+ + DD + + + ++ + D + Sbjct: 129 ELTEAPALFGQP-VGRITEVLGEVDDPGMEIEIAVRKYGVPHIFSDACLEQAKALPEKVR 187 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD---KLQLIVAIADPTAWIAEGS 239 + R DLT + VTID D DDA++ + +L+VAIAD + ++ GS Sbjct: 188 PADYKHRIDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRSKGWRLLVAIADVSHYVTTGS 247 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 +D A RA + Y P IPMLP +LS+ LCSL + R + C M ++A G I + Sbjct: 248 AIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLITAQGEI-HAYQ 306 Query: 300 FFAATIESKAKLVYDQVSDWLENT-GDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 F+ A + S A+ Y +V+ L NT G + + + + L + Q + R V Sbjct: 307 FYPAVMHSHARFTYTEVAAILANTRGPEAAKRKERVQDLLNLYGVFQSLLKAREARGAVD 366 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 + + + + + G + IV R A++++EEAM+AAN+C+A + G++ VH Sbjct: 367 FETTETQIVCDDNGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIDQSGQLGLFRVHDK 426 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEI 477 + L LK G+ + E + F ++ +P + + + R A Sbjct: 427 PSLEKQEILRNYLKAMGVSMSISENPSTKEFQQIANATKDRPDSQQIHTMLLRSMMQAFY 486 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-------------- 523 + E HFGL EAY +TSPIR+Y D++ HR++KA + G P Sbjct: 487 TPEGSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAELNGTHYKLPSLPTPGEAEAKMAK 546 Query: 524 ------------------------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 + + + R A RDV WL +++++ G Sbjct: 547 RLSSRVVEPGQKPRKRSAAKEFQAWEAAGLHCSANERRADEASRDVEAWLKCKYMREHLG 606 Query: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--- 616 + FA + ++ G+ V L + L + +++GE Sbjct: 607 EE--FAGTVSSVTTFGVFVTLDAMYVEGLVHITELGGD----YFRFDEARQELRGERSGV 660 Query: 617 VYKVTDVIDVTIAEVRMETRSIIARPV 643 Y + + V ++ V ++ R I R V Sbjct: 661 RYGIGARVRVQVSRVDLDGRRIDFRLV 687 >UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN Length = 863 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 166/667 (24%), Positives = 285/667 (42%), Gaps = 43/667 (6%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA------------QKSYFIPPPQMKKVM 55 L + K G ++ GFGF+ DA Q+ +IP + Sbjct: 56 LPEAKPAPKRGNKGFVGRLQVHPAGFGFVIPDALAPDQARLPPPEQRDLYIPKEFLGGAW 115 Query: 56 HGDRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 HGD+++A R + +++E ++ G+++ + ++PD P L + Sbjct: 116 HGDQVLAYPQPPGRDRRPWGKVAQVLERSRSKLTGRLEFRRGYAWVLPDDPRLPGKVKLE 175 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRS--FYAELTQYITFGDDHFVPWWVTLARHNLE 171 GL ++G E+ P GD+ YA +Y+ DD + H+L+ Sbjct: 176 P-EGLA-GLEQGARIAVEL-HFPQTGDKGGEIYATFLEYLGMADDPQSETRAVIVNHDLK 232 Query: 172 KEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQ 223 E E +E R D +L+ TID +D DDA+ + L ++ + Sbjct: 233 SEFDPEALAEAEAIPESIPPEEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYR 292 Query: 224 LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA 283 + V IAD + ++ EGS LDK A R + YLPG +PMLP +LS+ +CSL + R VL+ Sbjct: 293 IGVHIADVSHYVREGSALDKEAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLS 352 Query: 284 CRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQI 343 + ++ G + + F I SKA+L Y QV + E G E + + + LL ++ Sbjct: 353 VLVEITDGGRVLRH-SFREGVIRSKARLTYTQVQAFAEGKG-MPDEFKWLEPDLALLLEL 410 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 ++ R + + + +GE GE+ ++ + A ++EE M+ AN A+ Sbjct: 411 TRKLKAKRVAAGALDFHFTEVKVDIGEAGEIH-LIPQTEPDARSLIEELMLLANRIVAKY 469 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG- 462 L DK +Y VH LAA L G + E + + ++++ +P Sbjct: 470 LSDKGLPALYRVHEDPTDMAYAKLAAQLSKLGYELPGME-PSPKAMQAILKQVEGKPEAP 528 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR 522 + + + R A + E HFGL E Y +TSPIR+Y D+I HR+LK +++ Sbjct: 529 MVSTLLLRSLKLARYAHENLGHFGLAAEHYLHFTSPIRRYPDLIVHRVLKTLMRRRLTPE 588 Query: 523 PQD-------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 + + + R R AERD+ + + + G RF + ++ G Sbjct: 589 KVEHWREVFPRMAEHTSSRERSAEAAERDLTKYYQCCWAELHKGE--RFGGVVSGVTGFG 646 Query: 576 MRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 + V L +NG + L E V + V + + ++ D ++V I V + T Sbjct: 647 VFVAL-ENGVEGMVRLSSLLDDHYEYV-EETLSLVGTRTKRRIRIGDPLEVVIQGVNLPT 704 Query: 636 RSIIARP 642 R I P Sbjct: 705 RQIELVP 711 >UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PAC9_CHIPD Length = 705 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 142/656 (21%), Positives = 267/656 (40%), Gaps = 33/656 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE 67 + Q+ SQ G V+ T G F+ ++ +K + + + GD ++ + + Sbjct: 4 KKKPQKHSSQKKTFRGTVQITRSGMSFVIIEGQEKDVMVRQKNLNTALDGDEVLVDVIKQ 63 Query: 68 K---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R E+++ F G +Q ++P+ L I A + K Sbjct: 64 GKNEGRMEGVITEIIKRKKIEFTGSLQVNKGFAFLIPEKGLFMPDIYIPANS--LKDAKN 121 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 GD AV + K R E+ + + + + + L PD V E+ Sbjct: 122 GDKAVVRVVAWGEK-TRKPVGEVVEVLDASNTNDLAMKEILIESGFPLSFPDEVLKELNE 180 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 +E R+D TID +D DDA+ + L + ++ V IAD + ++ Sbjct: 181 IQENIDAEEVKKRKDFRKTLTFTIDPVDAKDFDDAISIRKLRGNWYEVGVHIADVSHYVQ 240 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 + LDK A RA + YLP +PMLP ++S++LCSLR +E + + ++ G I++ Sbjct: 241 PDTALDKEADKRATSVYLPDRVLPMLPEKISNELCSLRPHEDKLTFSAVFKMNDKGEIKE 300 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 N I S + Y+QV + +E ++V LL +I Q + R + Sbjct: 301 NW-IGRTVIHSDHRFTYEQVQEVIETGEG------PYKDEVLLLNKISQTLRKVRFENGA 353 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR------DKLGF 410 + + RF L E + + IV + + A++++EE M+ AN A + ++ Sbjct: 354 INFSSQEVRFQLDENAKPIGIVIKESKEAHQLIEELMLLANRTVAEYVYNIRIGTNQHVP 413 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLD-GFCKLRRELDAQPT-GFLDSRI 468 Y VH D +A + G ++ + + L F ++ + +P L++ Sbjct: 414 FPYRVHDTPDEEKLKMFSAFARKFGHKLEVDNLEKLARSFNEMLQLAHGKPEQHVLETLG 473 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-TATRPQDEI 527 R + A +T+ H+GLG E Y +TSPIR+Y D++ HR+L+ + + + ++ Sbjct: 474 IRTMAKAAYTTDDIGHYGLGFEHYCHFTSPIRRYPDVLVHRVLQQCLSHDIHPDKQMEKK 533 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +E R AER + +++ G + F + ++ G V VD Sbjct: 534 CKHSSEMERKAMEAERAANKYKQVEYMQQYIGEE--FDGVVSGVAHFGFWVETVDTKCEG 591 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + + + QE V ++ D + + + + R + V Sbjct: 592 LVSIHSMSTKDEFVYDEQEYSLVGSFTGRKIRIGDKVRIQVVAANLVKRQLDYDLV 647 >UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group II RepID=A3EPY9_9BACT Length = 744 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 163/646 (25%), Positives = 278/646 (43%), Gaps = 29/646 (4%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVI--HSEKERE 71 L + EG+ + G+GF+ + + + ++PP K MH D++++V + R Sbjct: 71 LPDKLHFREGMFLSHPDGYGFVVTEGEREDLYVPPGATKGAMHQDKVLSVHLGTDHRGRS 130 Query: 72 SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 + E++ + VG + + P P + + +EG+ AV + Sbjct: 131 EGQVVEIISRSRSSVVGVLHELKGGYFLSPRDPKIPHEFLVVD--NGAEKLQEGELAVLD 188 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------L 183 + R+P G ++++++ D V + +A H+L PD V E + Sbjct: 189 ILRYPEPGHIP-EGKISRFLGDPSDPSVDTDLVIATHHLSISFPDRVEAEAKRMAKEVAV 247 Query: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 + R DL L+ +TID D DDAL PD Q+ + IAD A++ GS+LDK Sbjct: 248 EPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELDK 307 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A R + Y P +PM P LS+ + SL +E R + +S G + ++ F + Sbjct: 308 EAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLES-SIFRS 366 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I S+ + Y +V L PES+ + +R L ++ + E R + + D P+ Sbjct: 367 VIRSRLRATYSRVHPILAGESTDSPESKFSVQ-LRSLWKLAKNLREERFQNGSLDFDLPE 425 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 +L +GE +DI+ PR +++ +VEE M+ AN A L K +Y VH P Sbjct: 426 PEIVLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHETPSPEK 485 Query: 424 ADALAALLKTHGLHVDAEEVLTLD--GFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTE 480 ++L L G+ + + + + P + + R A Sbjct: 486 TESLGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQARYDVY 545 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLL---KAVIKGETATRPQDEITVQMAERRRL 537 P HFGL ++ Y +TSPIR+Y D+I HRLL + GE + P +++ VQ +ER R Sbjct: 546 PLGHFGLAMDDYTHFTSPIRRYPDLIVHRLLDLPEGRPSGEGSFYPLEQVAVQASERERA 605 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 + AER D RF+ G +F+ + ++ G V L D +P A+ Sbjct: 606 SVEAERMAVDLKKIRFMGQHIGK--KFSGSVSGVTGFGFFVELSDVLVEGLVP---FSAL 660 Query: 598 RDELVCSQENGTVQIK--GETVYKVTDVIDVTIAEVRMETRSIIAR 641 D+ E + Y++ D ++V + V E I Sbjct: 661 NDDYYVYDEKHHLLRGETTRKTYRIGDRLEVVVVRVDNERLRIEFA 706 >UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13 RepID=B6BU65_9PROT Length = 723 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 166/656 (25%), Positives = 289/656 (44%), Gaps = 26/656 (3%) Query: 1 MFQDNPLLAQLKQQ--LHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMH 56 M +D +L K + + G V+ G+GFL D F+ +M KV H Sbjct: 72 MRRDGQILKNRKDVFCIAEKINCISGKVQGHPDGYGFLIPDELEHDDIFLNQKEMGKVFH 131 Query: 57 GDRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 DR++ I K + E++E F T VG+V + + + I Sbjct: 132 NDRVMVQISGLDRKGKAEGTIVEVLERFNTVLVGRVVQSYGVTIVAAEDKRIHQDIII-- 189 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 G + + GD E+ P + ++ + I DD + + L +HNL Sbjct: 190 PYGKDMDAVPGDIVEVEITTQPAMNIKPM-GQIIEVIGKLDDSGIEIEIALRKHNLPFRF 248 Query: 175 PDGVATEMLD-------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + E+ + R DL F+TID + +D DDA++A+ + +L+V Sbjct: 249 DKKIDKELEKISDISDGDLKDRIDLRDNFFITIDGETAKDFDDAVYAENHKE-FFKLLVG 307 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ EGS LDK A R + Y P IPMLP +LS+ LCSL + R V+ M Sbjct: 308 IADVSHYVKEGSALDKEAFDRGNSVYFPRRVIPMLPEKLSNKLCSLNPHVDRLVMIADMV 367 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 ++ G ++ + EF+ A I SK +L Y V + + + + + + + L + + Sbjct: 368 ITKKGEVQ-SYEFYPAVINSKHRLTYTLVDQLIFQKQNQKEHPKELIQHLNTLKSVYEVL 426 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 E R+ + DR + + + E G++ DIV R A+R++EE M+AAN+ AA L K Sbjct: 427 SEARNKRHAIEFDRIESQILFDEGGKIKDIVPLTRNEAHRLIEECMLAANVSAADYLLSK 486 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDS 466 G++ H + L ++L +H++ + + +L ++ + L + Sbjct: 487 KI-GLFRNHEKPKDEKLEILKSVLSDFKVHMEGGLSPVVMDYVELINKIKNKENFQMLQT 545 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA-TRPQD 525 I R A + HFGL + Y +TSPIR+Y D++ HRL+K+ + + T + Sbjct: 546 MILRSMQQANYGSVNKGHFGLAYDKYTHFTSPIRRYPDLVVHRLIKSFLNKKRLKTDNLE 605 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 I + R A RDV +WL ++KD+ G +F I ++ G+ V + Sbjct: 606 SIGNHCSSTERRADEATRDVENWLKCFYMKDRIGE--KFDVVISSVTNFGIFVEISRLHI 663 Query: 586 IAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 + L D V ++E + K + +++ D + V + V +E + Sbjct: 664 EGLVHVTELG--NDYFVFNKEKQMLEGEKTKKKFRLGDELAVKLIRVDLELGKMDF 717 >UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VX0_SOLUE Length = 762 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 167/690 (24%), Positives = 274/690 (39%), Gaps = 73/690 (10%) Query: 18 QTPRAEGVVKATEKGFGFLEVDAQ-----KSYFIPPPQMKKVMHGDRIIAVIHS--EKER 70 G + G+GFL D Q FIPP + MHGDR++ I R Sbjct: 64 SREFVVGRLNLHRDGYGFLIADRQIPRVVGDIFIPPDSASQAMHGDRVLVRIARIEPDGR 123 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLK------------------DAIPC 112 ++++ VG+ + +VP L+ D I Sbjct: 124 ADGNIVKVLKRAHATVVGEFKIGRRGCYVVPHDERLQQWVDIPEGMEFPPAGASVDRIGV 183 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 A + E +G E+ + +G+ S + + + DD V + + +H+L Sbjct: 184 TAPKVATVEQLDGMIVNVEIMEYAGRGE-SPVGRVVEILGHPDDFGVDVEIVIRKHHLPH 242 Query: 173 EAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 + P V + E R D +D VTID + D DDA++ LP L Sbjct: 243 QFPPEVIEQAQAIPGVIPPAEFEGRRDFRGMDIVTIDGETARDFDDAVWVDKLPSGNYVL 302 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD + ++ G+ +D+ A +R + Y P +PMLP ELS +LCSL E R VL+ Sbjct: 303 HVHIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSLVPLEDRLVLSA 362 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 M + G + EF I S A++ Y V LE + + + + L+ ++ Sbjct: 363 LMEIDHRGEVV-RQEFTEGVIRSVARMTYTNVHKLLEGDQVLRERYKPLVPRFELMQELA 421 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 R + D P+ + G ++ + PR IANR++EE M+AAN A L Sbjct: 422 LVLNRKRVRRGSIDFDLPEPLIEFDDLGAMIGVTRAPRNIANRLIEEFMLAANESVAGHL 481 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV--------------------- 443 + IY +H DP + G+ + + Sbjct: 482 ENAGIASIYRIHEKPDPKRVMEFEEVAAHFGVSLGVGAIEVKRFKVTDKRRDGTKKQQAI 541 Query: 444 -------LTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATW 495 + + KL +++ +P L + R A STE HF L + Y + Sbjct: 542 VLADNTNINSRHYQKLVAKIEGKPEERILSFLMLRSLRQARYSTENTGHFALAADTYTHF 601 Query: 496 TSPIRKYGDMINHRLLKAVIKGETATRPQDE--ITVQMAERRRLNRMAERDVGDWLYARF 553 TSPIR+Y D+I HRLL+AV+ G+ + I ++ R AER++ +W +F Sbjct: 602 TSPIRRYPDLIVHRLLRAVLLGKPTPDESELGPIADDCSQSERRAADAERELVEWKKVKF 661 Query: 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN--GTVQ 611 + D+ G D F A ++ ++ G+ V L + +P L D+ QEN V Sbjct: 662 MADRVGED--FDALVISTTKYGLFVELTNLFIEGLVPIDTLP---DDQYTYQENVRKVVG 716 Query: 612 IKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + + D + V + + R + Sbjct: 717 KRTRRQFSIGDKLRVVLDRIDANDRKLQFS 746 >UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ5_9SPHI Length = 825 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 150/668 (22%), Positives = 271/668 (40%), Gaps = 53/668 (7%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDA--------QKSYFIPPPQMKKVMHGDRIIAVIHSE- 67 + EGVV F F+ D ++ + + GDR+ V + Sbjct: 116 ADANVVEGVVDHVNSRFAFVIPDTAAGTARDRDDDIWVSTDDLAGAVDGDRVRVVRFQDS 175 Query: 68 --------KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLN 119 + R + +VE T VG+++ +VPD + D I + Sbjct: 176 RNGGRNAARRRIEGKVASVVERGRTELVGRIEVWPTYGFVVPDSKKIYDDIFIPKEK--L 233 Query: 120 HEFKEGDWAVAEMRRHPLKGD--RSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 +G+ + + + P + F E+ + + LA L P Sbjct: 234 GGANDGEKVIVRLTKFPDPNSSKQRFEGEVITVLGVAGQNNTEMHAILAEFGLPIHFPAD 293 Query: 178 VATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 V E + R D+ + TID +D DDAL + L + ++ + IA Sbjct: 294 VEKEAEAIPTKILKKDLAKRRDMRDVTTFTIDPIDAKDFDDALSVQILDNGNFEIGIHIA 353 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D T ++ GSKL++ A RA + YL +PMLP +LS+ LCSLR NE + + ++ Sbjct: 354 DVTHYVLPGSKLEEEAFKRATSVYLVDRVVPMLPEKLSNGLCSLRPNEDKLTFSAVFEMT 413 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGE 349 +D I + F I S + Y++ D L + E++RLL ++ + + Sbjct: 414 SDAKIVNEW-FGRTAIHSNRRFAYEEAQDILNSNSG------DYIEELRLLNELAYKLRD 466 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD--- 406 R + + + + RF L E G L + + R+ N+++EE M+ AN A + Sbjct: 467 ERFKNGAINFETVEVRFRLDENGVPLAVYPKIRQDTNKLIEEFMLLANKRVAEFVHSLSK 526 Query: 407 -----KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT 461 + +Y VH + + + G ++ ++ + + ++ +P Sbjct: 527 RNKGGEENTMVYRVHESPAEDKLRSFSDFARKLGYKLNVDDEHLSNSMNRFMASIEGKPE 586 Query: 462 G-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGET 519 L R S A STE HFGL + Y+ +TSPIR+Y DM+ HRLL+ + KG+ Sbjct: 587 ANMLQQLAVRTMSKARYSTEDLGHFGLAFKRYSHFTSPIRRYPDMMAHRLLQHYLDKGKP 646 Query: 520 ATRPQ-DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 A R + +E +ER ++ AER + F+ + D F I ++ G+ V Sbjct: 647 ADRDEYEEKCRHSSEREKMASDAERASIKYKQVEFMS-RMAPDQVFEGVISGVTEFGIFV 705 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETR 636 + +N + + + D+ ++ + + + +Y D + V + E + R Sbjct: 706 EITENSCEGLVR---MQDLSDDFYEFDKDNYRIIGSRTKKMYTFGDAVVVRVKETNLARR 762 Query: 637 SIIARPVA 644 S+ V+ Sbjct: 763 SMDFALVS 770 >UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETS7_AMOA5 Length = 718 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 156/647 (24%), Positives = 270/647 (41%), Gaps = 38/647 (5%) Query: 17 SQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSE----KERE 71 + P G V G+ ++ V D Q+ + + + GD + I + K Sbjct: 83 DKLPYVVGKVDYVNPGYAYVVVGDGQQDVLVRQKDLLYALDGDVVKVAITKQENGTKGHP 142 Query: 72 SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 E++E ++VG VQ + ++P + I R + K D V E Sbjct: 143 VGRVVEILEQNKNKWVGTVQQQGSVTFVLPISRRMHYDIFVRPEN--LKKAKHNDRVVVE 200 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------L 183 + + P ++ + + ++ V +A NL + P+ V E Sbjct: 201 LVKRPTT-SKNPEGRIIEVFGPMGENDVEIHTIMAEFNLPTQFPENVLAETSAISIDIPK 259 Query: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 +E R+D + +TID +D DDAL K LP+ +++ V IAD + ++ E S +D+ Sbjct: 260 EEIAARKDFREVFTITIDPEDAKDFDDALSLKILPNGHIEVGVHIADVSYYVQENSLVDQ 319 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A R + YL IPM+P LS++LCSL+ +E RP + L G++ F Sbjct: 320 EAFERGTSVYLVDRTIPMIPERLSNELCSLKPHEDRPAFSAVFELDKQGSLHHEW-FGET 378 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I S +L Y++ + + ++ EQ+ L + ++ R + D P Sbjct: 379 VIHSDQRLSYEEAQQAITQP------THSLHEQITTLNNLAKKLRADRFKSGAINFDTPS 432 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR-----DKLGFGIYNVHMG 418 +F L ++G L I+ + ++R++EE M+ AN A +R + +Y H Sbjct: 433 VKFQLDKQGRPLSILPKVSEDSHRLIEEFMLLANKRVALHVRRMKQGKQFPTFVYRTHDQ 492 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEI 477 + A +K G + AE L L +P + + R + A Sbjct: 493 PNLERLGDFALFVKQFGYSIKAEPQEIAQSINVLSEGLAGKPEAHIIQTLAIRLMAKALY 552 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP--QDEITVQMAERR 535 +TE PHFGL E Y +TSPIR+Y D++ HRLLK +KGE ++ +ER Sbjct: 553 TTEAKPHFGLAFEHYTHFTSPIRRYPDLLVHRLLKKYLKGEFYFEEAIYEKKCQHASERE 612 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 R+ AER + ++ G R I + G+ V L+D I L Sbjct: 613 RVAADAERASIKYKQVELMQTLQGK--RLKGVISSLMEWGIYVELLDILCEGMIR---LS 667 Query: 596 AVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 + D+ + G V + + VY++ D+++V I + R++ Sbjct: 668 DLTDDYYVLDKKGFKLVGERTKKVYQLGDLVEVEIKACDISKRTVDL 714 >UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_ALIAD Length = 903 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 154/661 (23%), Positives = 268/661 (40%), Gaps = 39/661 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 + L Q G ++ +G+GF+ + A+ +I + M GDR++ + E+ Sbjct: 58 RYALPEQMNFIAGRLQLKARGYGFVIPENEAEADIYILQTALNGAMSGDRVLVRLREERG 117 Query: 70 R-----ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 + E +++E R VG++ + P + + + + Sbjct: 118 KGAQAHREGEIVKILERGNDRIVGQIAIYAHHAFVTPLDKRFPEDVFV--PKDAVGNAHD 175 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 G V E+ +P + + + + D+ V + ++NL + P+ V + Sbjct: 176 GQVVVVELTSYPT-ATHGPVGRVVEVLGYPDEPGVDILAIVRKYNLPEAFPEDVLADAER 234 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 E R+D VTID +D+DDA+ K LP+ +L V IAD ++ Sbjct: 235 IPLEIDPAEIARRKDFRGETIVTIDGDDAKDLDDAVHVKRLPNGHYELGVHIADVGYYVK 294 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S LDK A R + YL IPMLP LS+++CSL R ++C M + G + Sbjct: 295 ENSPLDKEAFRRGTSVYLVDRVIPMLPPRLSNNICSLNPKVDRLTMSCVMEIDGQGRVVS 354 Query: 297 NIEFFAATIESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + E + I + ++ Y+ V LE+ + + + + ++ + R Sbjct: 355 H-EIVPSVIRTAERMTYNDVRKILEDEDEELRARYAPLVPMFERMRELALILRDKRMRRG 413 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + D + + + + GE I PR IA RI+EE M+AAN A IY V Sbjct: 414 AIDFDFDEIKVRVNDLGEPTSIEPRPRSIAERIIEEFMLAANETVAEHFHWLGVPFIYRV 473 Query: 416 HMGFDPANADALAALLKTHGLHVDAEE--VLTLDGFCKLRRELDAQPTG-FLDSRIRRFQ 472 H DP L L G HV + ++ E++ + + + R Sbjct: 474 HDEPDPDKIIHLNLFLHNFGYHVKGSAGGKVHPRALQEVLNEVEGKREARMISMVMLRSM 533 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD------- 525 A+ E HFGL E Y +TSPIR+Y D+ HR+++ V+ + + ++ Sbjct: 534 QQAKYRPECTGHFGLAAEYYTHFTSPIRRYPDLAIHRIIREVLTRGSLSPQREAHLREFV 593 Query: 526 -EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 E + Q +ER R+ + AER+V +++ D F I + G+ V+L DNG Sbjct: 594 AEASRQSSERERIAQEAEREVDQLKMVEYMQAHI--DEEFDGIISGVVPFGLFVQL-DNG 650 Query: 585 AIAFIPAPFLHAVRDELVCSQENGT--VQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 I L D+ E + + V+++ D + V + E I Sbjct: 651 VEGLIHISELS---DDYYVLHERQMALIGERTRRVFRIGDPVRVVVIRAVKEDLRIDFGL 707 Query: 643 V 643 V Sbjct: 708 V 708 >UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 RepID=C2KYI7_9FIRM Length = 745 Score = 583 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 170/679 (25%), Positives = 297/679 (43%), Gaps = 59/679 (8%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSE---K 68 + +++ +G A +GFGF+ + + ++ +IP + M GD + ++ + Sbjct: 64 KYSRAESFSQKGTFHANRRGFGFVSLSEKEEDVYIPKGEAGNAMDGDLVKVILTKKSENG 123 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 + + +++E +G V+ K + L + PD+P L D I G + GD Sbjct: 124 SKAEGKISKVLERANKEVLGLVKEKREGLYLSPDNPKLPDCILISP--GRDKGAVPGDKV 181 Query: 129 VAEMRRH-PLKGDRSF----------------YAELTQYITFGDDHFVPWWVTLARHNLE 171 V E+ + P K +++ E+ + + DD + + +L Sbjct: 182 VLEILSYGPSKENKAPRGRIPRKRISPLLSCPVGEVKEILGHKDDPGMDVLSVIRSFSLP 241 Query: 172 KEAPDGVATEMLD----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPD-D 220 +E P+ V E E R+D L +TID +D+DDA+ P+ + Sbjct: 242 EEFPEDVLLEANQLPNAVSPEKAEETGRKDFRKLTTITIDGEDAKDLDDAISLDYFPEKE 301 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 + +L V IAD + ++ EGS LD A R + YL IPMLP+ LS+ +CSL R Sbjct: 302 EYRLYVHIADVSDYVKEGSALDLEALERGTSVYLTDRVIPMLPKALSNGICSLHEGVDRL 361 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE----AIAEQ 336 L+C M +G + E + I S ++ Y +V+ LE+ PE + E Sbjct: 362 CLSCIMDFDREGRPLSH-EITPSIICSNKRMSYHKVTALLEDKEWEDPEEKLSYLPFHEL 420 Query: 337 VRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAA 396 + + ++ + + R + D P+ + E G + I AE R +++I+EE M+ A Sbjct: 421 LTKMRELARLLRKSRMARGALDFDFPESKVYFDENGNISKICAEEREESHKIIEEFMLIA 480 Query: 397 NICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA--EEVLTLDGFCKLRR 454 N A + +Y +H D L+ +L + + A + L +L Sbjct: 481 NETVAEEYYWRDIPFLYRIHEKPDWEKWQNLSHVLSSFSYSLKAKDPDNLRPKALQELLS 540 Query: 455 ELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK- 512 +L +P L S I R A+ STEP HFGL + Y+ +TSPIR+Y D+ HR++K Sbjct: 541 KLKGKPEEAMLSSMILRSLKQAKYSTEPEGHFGLASKYYSHFTSPIRRYPDLQIHRIIKE 600 Query: 513 --AVIKGETATRPQDEI----TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA 566 A + E R + I Q + R R AERD +++K+ G F Sbjct: 601 NIAYQENEKRRRHYERILPDVASQSSLRERRAEEAERDCMKLKKCQYMKNFLGE--VFPG 658 Query: 567 EIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGE---TVYKVTDV 623 I +++ G+ V L +N IP F+ D + ++E + ++GE + + D Sbjct: 659 RISGLTQYGIYVTL-ENSIEGMIPLRFM--TEDYYIFNEEE--ISLRGEASGKTFHMGDP 713 Query: 624 IDVTIAEVRMETRSIIARP 642 + +++ V +RSI P Sbjct: 714 MWISVYAVDTLSRSIDFLP 732 >UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKY3_THEYD Length = 695 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 161/646 (24%), Positives = 275/646 (42%), Gaps = 38/646 (5%) Query: 18 QTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKERESAEP 75 + G +A + GFGF+ D+ K FIPP MHGDR++A + K+R Sbjct: 62 EAKLITGFFEAHKNGFGFVIPDSPKETDIFIPPHATMGAMHGDRVVARVEQRKKR-EGRI 120 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 ++E R VG V+ I P + I + + + G +AE+ + Sbjct: 121 VRILERATRRVVGIVEKSGPIFYIQPRKKNINQQIVIASG---DIKVNPGSLVLAEIVTY 177 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV------- 188 ++ A++ + + + L K+ V+ + L Sbjct: 178 -QAVNKPLVAKILKVFEKPKTPKEDIEILTYEYELPKKFSKEVSNFSEELSLKGISKKQF 236 Query: 189 --REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 R DL L VTID + +D DDA+ K + + L V IAD + +I S +D A+ Sbjct: 237 KNRVDLRELPTVTIDGENAKDFDDAVSIKKIRNG-FILWVHIADVSHYIKWNSTIDGEAR 295 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 R + YLP IPMLP ELS++LCSL R M S G ++++ F+ + I+ Sbjct: 296 HRGTSVYLPDRVIPMLPPELSENLCSLLPKIPRLTFTVEMHFSNSGERKESL-FYPSIIQ 354 Query: 307 SKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 + ++ Y V L + + + + +A++C+ R + D P+ Sbjct: 355 TAERMTYTSVKKILIDKDKEEIKRYKPLVPYFEKMAELCEILKNKRKKRGSLDFDLPEPE 414 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 +L KG+ I+ R +A+ I+EE MIAAN A L +Y VH + Sbjct: 415 VLLDIKGDPHAIIKAERNLAHFIIEEFMIAANEAVAEFLYSNNIPSLYRVHEEPETNKIQ 474 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPH 484 + ++K G+ ++ L F + + P ++ I R A S+E H Sbjct: 475 YITRIVKNLGI---LKQDLKPSDFHEFIEIIKGTPYEEIVNYLILRSLKQARYSSENVGH 531 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE--------ITVQMAERRR 536 FGL E Y +TSPIR+Y D++ HR+LK ++ T+ + + I + + R Sbjct: 532 FGLASECYTHFTSPIRRYPDLVVHRILKEFLQKGKITKERQKELKEILPHIAIHSSRMER 591 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHA 596 ERD + F+KDK G + F + ++ G+RVRL + F+ + Sbjct: 592 RADEVERDAIQIMRVWFMKDKVGEE--FEGRVTMVTPEGLRVRLEEYYIEGFLHLSHM-- 647 Query: 597 VRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 D+ E + +K + + + ++V +++V +E R II Sbjct: 648 -IDDFYQFDEKRYCLIGLKKKRKFTIGTKLNVRVSKVSLEEREIIF 692 >UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M940_CAPOD Length = 742 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 137/665 (20%), Positives = 255/665 (38%), Gaps = 42/665 (6%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE--- 67 K Q G + + +G G++ VD F+ + K +HGD + + Sbjct: 86 KYQAIPMQHYYVGTLDVSARGNGYVIVDGLDNDIFVAQNFLNKALHGDLVEVYVFPRFRN 145 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + + E +++E RFVG VQ + +VP + + + ++GD Sbjct: 146 RNKMEGEISKVLERNKVRFVGTVQMHKNFAFVVPTDARMYTDFFV--LKDKLNGAQDGDR 203 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML---- 183 + + K D + Q + + LA + L P+ V Sbjct: 204 VIVRIEDWKDKSDSPM-GVVEQILGKPGEQTTEMHSILAEYGLPYTYPEEVEAFAKKLDL 262 Query: 184 ----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 +E R D+ TID +D DDAL K L + ++ V IAD + ++ EG+ Sbjct: 263 SITDEEIARRRDMRENLTFTIDPRDAKDFDDALSFKLLENGNYEIGVHIADVSHYVKEGT 322 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD+ A RA + YL +PMLP L + CSLR +E + + ++ + D I Sbjct: 323 ILDEEAYNRATSVYLVDRVVPMLPEVLCNFACSLRPDEDKYTFSAVFEMNKKAEVVD-IW 381 Query: 300 FFAATIESKAKLVYDQVSDWLEN---------------TGDWQPESEAIAEQVRLLAQIC 344 S + Y++ +E T + + E + L + Sbjct: 382 IGRTVTHSSFRFAYEEAQSVIEQAKVGEGYTIPAETSITDKERAIPAEVVEAILTLNTLA 441 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 ++ R + D+ + +F L E G + + + AN+++EE M+ AN A + Sbjct: 442 EKLRRKRMRLGAITFDKVEVKFDLDENGNPTGVYFKESKEANKLIEEFMLLANRKVAEYV 501 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDA-QPTG 462 +Y VH D A++ G ++ T D L E+ + Sbjct: 502 AKMKKTFVYRVHDEPDADKLQQFNAVISRFGYSLNLNNRQTTTDSLNNLLEEVKGKKEQN 561 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET--A 520 +D+ R + A +T+ H+GL E Y +TSPIR+Y D++ HRLL+ + Sbjct: 562 LVDTLAIRSMAKATYTTKNIGHYGLAFEYYTHFTSPIRRYPDVMVHRLLQLYLDNAPSQP 621 Query: 521 TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + ++ L AERD ++ ++++ + +FA I ++ G+ V + Sbjct: 622 EAEYETKCKHSSQMESLAASAERDSIKYMQVKYMEAH--KNQQFAGVISGVTEWGIYVEI 679 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 N + A ++D+ E V Y++ D + + + + + + Sbjct: 680 TVNKCEGLVRAR---DIKDDYYTFDEQQYALVGQATGKTYQLGDEVMIRVKNTDLMKKQL 736 Query: 639 IARPV 643 + Sbjct: 737 DFELI 741 >UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2D1_SALRD Length = 666 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 163/661 (24%), Positives = 277/661 (41%), Gaps = 47/661 (7%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVIH---SE 67 K + + T + GV++ +KGFGF++ D + +FI M + +HGD + + E Sbjct: 17 KYKTKATTRQHTGVLQCHDKGFGFVQATDQDEEFFIREANMGEALHGDLVRVAVAARAPE 76 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 ++ E E+VE T VG ++D + PD + + A K+G+ Sbjct: 77 DKKRECEVLEVVERRCTEVVGTFHHRSDFAFVEPDDQRILQDVYV--APDAFSGAKDGEK 134 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML---- 183 + + R + S + + I DD V +++ + PD V E Sbjct: 135 VMVSIDRFDDR-KASPEGRILRVIGPSDDPNVRVLSLAMSMDVKADFPDEVEAEAESIPV 193 Query: 184 ----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 DE R DL TID +D DDA+ + L + ++ V IAD + ++ + Sbjct: 194 KIPEDEIERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVGVHIADVSHYVEPDT 253 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 +D A R + YL IPMLP +LS+ +CSLR +E + + M L+ +G + D E Sbjct: 254 AIDAEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVVD-YE 312 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 I SK +L YD+ D++E + +A V ++ + R + Sbjct: 313 ICETVIHSKERLTYDRAQDYIEGGYP----DDKMAADVVQANRLAKTITRRRMQEGAIDF 368 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR-------------D 406 + IL + G +IV + R ANR++EE M+ AN A+ + D Sbjct: 369 GSDEVNVILDDDGTPTNIVRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRHRSNGTD 428 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQPTG-FL 464 + +Y VH D LA ++ + + L E+ QP + Sbjct: 429 EPLPFVYRVHDSPDSEEIQQLAEYVRVFDHELPLTDGNARSSDLGALIDEVQGQPEEQVI 488 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 R S AE + H+GLG + Y+ +TSPIR+Y D++ HRLLK KG + + Sbjct: 489 VRAALRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLLKRYAKGGSPADIE 548 Query: 525 D--EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 D +E+ R AER+ ++K+ G + F + +++ G+ V + D Sbjct: 549 DLAARCEHCSEQERNAEEAERESVKLKQVEYVKNHVGEE--FDGVVSGVTKFGVFVEITD 606 Query: 583 NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGE---TVYKVTDVIDVTIAEVRMETRSII 639 + ++ + E T ++GE T Y+ D + V +A +E R I Sbjct: 607 LLVEGLVHVREMN----DYYVYDE-STYTLRGENNGTSYRPGDSVRVEVASASVEDREID 661 Query: 640 A 640 Sbjct: 662 L 662 >UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B076_SYNWW Length = 705 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 160/655 (24%), Positives = 275/655 (41%), Gaps = 38/655 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEK- 68 K L +G++ ++KGFG L D F+ ++ MH DR++ I + Sbjct: 59 KFGLPEMMNLVKGIIHISKKGFGVLVPDKAGLGEVFVYGKKLNGAMHNDRVMVRIQEKGY 118 Query: 69 --ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 +R ++ VG L +VPD I +A+R + KEGD Sbjct: 119 NGQRPEGTVIRILARNTRELVGTFTKGRHLLQVVPDDSRQIYPIYVKASR--KWKAKEGD 176 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--- 183 + + P + D+ ++ + + + V V +H L E PD V E Sbjct: 177 KVLVRISSWPER-DKVAEGKIVEVLGRKGEAGVDLKVLAKKHGLRLEFPDNVMEEARNVA 235 Query: 184 -----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 +E R DL VTID +D+DDA+ + +L V IAD + ++ E Sbjct: 236 VEVNAEEISRRRDLREWRMVTIDGEDAKDLDDAVSIEKTSKG-YKLGVHIADVSHYVKED 294 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 KLD+ A R + YL +PMLP ELS+++CSL R ++C M + + G + D Sbjct: 295 CKLDREAFKRGTSVYLIDKVLPMLPVELSNNICSLNPQVERLAISCIMDIDSWGQVVD-Y 353 Query: 299 EFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 E + I+ ++ Y V+ L +N + + E L+ ++ R N ++ Sbjct: 354 EIVKSVIQINERMTYSDVNRILADNPPALKERYGELVEDFFLMKELSDILRRSRLNRGML 413 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 D P+ + I+ E+G L++ R ++E+ MI AN A L + +Y VH Sbjct: 414 DFDFPESKVIVDEEGFPLEVKRAERGPGEMLIEDFMIKANEVVAEHLHNLGLPVLYRVHE 473 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAE 476 D L +L G + +V + F + ++ QP + I R A Sbjct: 474 KPDEEAISELNKVLAVFGHKIKGHKV-SPMLFQGILADIKGQPEEQMISLMILRSMKHAS 532 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM----- 531 EP HFGL Y +TSPIR+Y D+I HR+L +++ G TR + + +M Sbjct: 533 YLPEPRGHFGLASPYYCHFTSPIRRYPDLIVHRVLSSLLDGGMTTRKKSSLEKKMTIYGE 592 Query: 532 --AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + + AER++ D A+++ G + F+A I + G V L +N + Sbjct: 593 QSSLQEMKAEEAERELLDVKKAQYMSQFVGDE--FSARISSVQAFGFFVAL-ENTVEGLV 649 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGE---TVYKVTDVIDVTIAEVRMETRSIIAR 641 + ++ D+ + T ++G + + D + V + V ++ I Sbjct: 650 H---ISSIADDYYLFSDR-TYTLRGRHSGRKFAIGDQVRVQLVRVDVDEGKIDFE 700 >UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KPF2_CLOPH Length = 716 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 151/653 (23%), Positives = 266/653 (40%), Gaps = 36/653 (5%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQK---SYFIPPPQMKKVMHGDRIIAVIHSE--KER 70 + G+ T +GFGF++++ ++ FIP + K ++ DR+ I E R Sbjct: 67 ETNGNIKTGIFSGTTRGFGFVKIEGEENEEDIFIPESETKGALNKDRVQIAIFEEQSGRR 126 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 ++E +T VG Q + ++ D+ + + G + Sbjct: 127 REGAVISILERNVTELVGTFQKSKNFGFVIADNTKFNSDVFI--PKEHTKGAVNGHKVLV 184 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD------ 184 ++ + + ++ ++ + I +D V + + L E PD V ++ Sbjct: 185 QLTDYGSE-TKNPEGKIIKIIGHINDPGVDVVSVILENGLPTEFPDEVMKQVERIGEEVS 243 Query: 185 --EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 + R DL L VTID +D+DDA+ D QL V IAD + ++ E S LD Sbjct: 244 SADIGGRVDLRNLQTVTIDGEDAKDLDDAITLSK-KGDIYQLGVHIADVSNYVTEDSPLD 302 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 K A R + YL IPMLP +LS+ +CSL A R L+C M + G + + Sbjct: 303 KEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGSDRLALSCMMEIDEKGNVVGH-RIAE 361 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQ-PESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 I ++ Y V +E+ + + E + + L+ ++ E R + D Sbjct: 362 TVINVDRRMTYTSVKKIIEDHDEAEIEEYKELVPMFELMLELADILREKRRKRGSIDFDF 421 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 P+ + IL G DI R A +I+E+ M+ AN A + +Y H D Sbjct: 422 PESKIILDSDGRPTDIKPYERNKATKIIEDFMLIANETVAEDFFWQELPFVYRTHENPDL 481 Query: 422 ANADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEIST 479 L+ + G + ++ + KL ++D +P L SR+ R A+ +T Sbjct: 482 EKIQKLSVFINNFGYTMRIGQDEIHPKELQKLLIKIDGKPEEALISRLTLRSMKQAKYTT 541 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-------QDEITVQMA 532 HFGL + Y+ +TSPIR+Y D+ HR++K ++G + +E+ Q + Sbjct: 542 TCDGHFGLSTKYYSHFTSPIRRYPDLQIHRIIKENLRGGLKEKRINHYESILNEVARQSS 601 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP 592 R +ER+V ++ G F I ++ GM V L N I Sbjct: 602 LAERRADESEREVEKLKKVEYMSQFIG--QTFEGVISGVTSWGMYVELP-NTVEGMIRLA 658 Query: 593 FLHAVRDELVCSQENGTVQIK--GETVYKVTDVIDVTIAEVRMETRSIIARPV 643 +H D+ E + + +YK+ + + + + + R+I V Sbjct: 659 DMH---DDYYIYDEEHYLLTGEHTKKIYKLGEAVVIRVEDTDKLMRTINFSIV 708 >UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BNS1_9LACT Length = 775 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 167/677 (24%), Positives = 286/677 (42%), Gaps = 62/677 (9%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRI 60 F NPL LK G +A +KGFGF+ V+ + FIP M GD + Sbjct: 62 FGLNPLNQTLK-----------GTYRANDKGFGFVTVVEGEPDIFIPRGDTMSAMDGDEV 110 Query: 61 IAVIHS-----EKERESAEPEELVEPFLTRFVGKVQGKNDRL---------AIVPDHPLL 106 VI + + + ++++ T+ VG + +V D L Sbjct: 111 ELVITEPADSYRQRSATGKIVQIIQRNTTQVVGIYTRFSSETAEDTGYCGEVVVKDKKLA 170 Query: 107 KDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDR-SFYAELTQYITFGDDHFVPWWVTL 165 R GL+ +G + E+ ++ + +R S + + I + D + + L Sbjct: 171 GTRCLIRP-NGLHP--VDGTVVIVELTKYTNEKNRSSLEGIVVKEIGYKDAVGMDILMVL 227 Query: 166 ARHNLEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKAL 217 + ++ E P V + ++ R+DL VTID A +D+DDA+ Sbjct: 228 QQLHIPTEFPQEVIDQANLVPEVITDEDRQGRKDLRGQLTVTIDGADAKDLDDAVALTKR 287 Query: 218 PDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANE 277 D +L V+IAD + ++ E S +D+ A R + YL +PMLP+ LS+ +CSL +E Sbjct: 288 EDGTFELTVSIADVSYYVTENSAIDREAFERGTSVYLTDRVVPMLPQRLSNGICSLHPHE 347 Query: 278 VRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTG-DWQPESEAIAEQ 336 R ++CRM + GTI E F + I S +L Y V++ E + Q E + + Sbjct: 348 ERLTMSCRMEIDRSGTIYQ-YEIFPSVIRSDMRLTYSLVNELYEKKEVEIQDEIQQMLLD 406 Query: 337 VRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAA 396 ++ L I +RR + + + + + I+ E+G +DI R +A R++E M+AA Sbjct: 407 MKELHHILERRRK---ERGAIDFETHEAKIIVDEQGAPIDIQIRERGVAERLIESFMLAA 463 Query: 397 NICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRE 455 N A + K IY VH + G+++ + ++ K E Sbjct: 464 NETVAMHYQRKNVPFIYRVHEQPQQEKMQRFLEFVTAFGINIKGTSDTISPKKLQKALDE 523 Query: 456 LDA-QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 + + + + R A+ P H+GL E Y +TSPIR+Y D+I HR+++ Sbjct: 524 VKGETYEAVVSTMMLRSMKQAKYDIIPSGHYGLAAEDYTHFTSPIRRYPDLIVHRMIRQY 583 Query: 515 ---------IKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA 565 + E + I Q ++ RL AER+V A F+ DK G + F Sbjct: 584 EGSGSFLSKQQEELNASKLERIADQSSKMERLAVQAEREVDAMKKAEFMADKIGQE--FE 641 Query: 566 AEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDV 623 + +++ GM V L N + ++ + E+ V I T Y++ D Sbjct: 642 GIVSSVTKFGMFVELP-NTVEGLVHITHMN---QDYFNFIESHLVLIGERTGVTYRIGDC 697 Query: 624 IDVTIAEVRMETRSIIA 640 + V + +V +E I Sbjct: 698 VKVKLIKVDVEAHEIDF 714 >UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VV97_DYAFD Length = 795 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 148/656 (22%), Positives = 269/656 (41%), Gaps = 43/656 (6%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE------ 67 L ++ G V+ KGF F+ ++ + ++ + GD + S+ Sbjct: 92 LKTKPQGLTGRVERVNKGFAFVVIEGREDDIYVDLELLNGAWDGDIVQVQPLSKNLRSKG 151 Query: 68 -----KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 + R ++VE VG ++ + PD+ L D I + Sbjct: 152 RGDSGRNRTEGRVTDIVERSNAEIVGIIEINPRFAVVQPDNKRLYDPIYLEPDQV--GAA 209 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 + GD + ++ + ++ E+ + ++ V LA L PD V E Sbjct: 210 RHGDKVIVKVTEWSTRRSQA-EGEIVSVLGAAGNNDVEMHAILAEFGLPYHFPDEVEAEA 268 Query: 183 LD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 + R D+ + TID +D DDAL + L +D +++ V IAD + + Sbjct: 269 QKIPNKIVKKDLAKRRDIRDVLTFTIDPVDAKDFDDALSVRYLDEDVVEVGVHIADVSHY 328 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + G++L+K A RA + YL +PMLP +LS++LCSLR NE R + +++ G + Sbjct: 329 VLPGTELEKEALRRATSVYLVDRTVPMLPEKLSNNLCSLRPNEDRLAFSAIFEITSKGKL 388 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 F I S + Y++ L++ P+ ++ L ++ + + R Sbjct: 389 LKEW-FGRTVIHSDRRFTYEEAQAVLDSGEGDFPK------ELDTLNKLAKIFRKERFKK 441 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR-----DKLG 409 + + P+ RF L +G L I + R +N+++EE M+ AN A + + Sbjct: 442 GAINFETPEVRFRLDPEGRPLGIYTKERHDSNKLIEEFMLLANKRVAEYVYSLSKGEDKN 501 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDAQPT-GFLDSR 467 +Y +H DP A + GL ++ EE + +++ +P ++S Sbjct: 502 TMVYRIHEAPDPDRLQTFANFVAKLGLKLEVEEESKIAKSMNAMLAKVEGKPEQNLIESL 561 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT--RPQD 525 R + A STE HFGL Y+ +TSPIR+Y D++ HRLL+ + G + Sbjct: 562 AVRTMAKARYSTEDLGHFGLAFRRYSHFTSPIRRYPDVMAHRLLQHYLDGGANVDQETYE 621 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 + +ER RL AER + ++ + F I ++ G+ V + + + Sbjct: 622 RASKHSSERERLAAEAERASIKYKQVEYMS-MMDPEKEFGGIITGVTEFGIFVEITETAS 680 Query: 586 IAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 I L D +EN + + +Y D + V + E + RS+ Sbjct: 681 EGLIRMTDLGD--DYYELDKENYRVIGQHTKKIYAFGDAVKVKVKETNLARRSMDL 734 >UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3M9_9FIRM Length = 750 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 149/645 (23%), Positives = 269/645 (41%), Gaps = 36/645 (5%) Query: 21 RAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDR-IIAVIHSEKERESAEPEELV 79 +G + KGFGFL+++ + S I + M+GD I+ + S + E ++ Sbjct: 71 YYQGALSVNRKGFGFLDLEDENSIHITEANLHGAMNGDVAIVKKLPSFYGSDEGEVIRVL 130 Query: 80 EPFLTRFVGKVQGK-NDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 + VG L + D +K + + + G + ++ R+ Sbjct: 131 QHKTNTLVGTFFTSVGKGLQLRLDDERIKSRLIVKNWQAFKM--VSGTKVLLKVLRY--- 185 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLVRE 190 E+ Q + DD V L ++++ + P+ V + E R Sbjct: 186 -GDPMELEIVQLLGHIDDPGVDILSVLLEYDIDPQFPEEVMEQAQRTPSRVSPKEKEGRR 244 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 D T +TID ++D+DDA+ + + +L V IAD + ++ E S LD+ A R Sbjct: 245 DCTGKMIITIDGEDSKDLDDAVCVEKIA-GGYRLGVHIADVSHYVPENSPLDQEALKRGT 303 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + Y+ +PMLP LS+ +CSL +R L+C M +S G I N E F + I++ + Sbjct: 304 STYVVDRVVPMLPHLLSNGICSLNPKVLRLTLSCEMEISEAGEIL-NYEIFPSFIKTTER 362 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 + Y V+ LE + + + + E + + + + RH + + P+ + IL E Sbjct: 363 MTYTAVNAILEGEEEACRKYKKLTEMIGWMRDCSRAIRKRRHEAGAIDFETPEAKIILNE 422 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 + ++ +I R+ A I+E+ M+ AN C AR ++ +Y VH +P A + Sbjct: 423 QNKIEEIQVRERKEAEMIIEDFMVTANECVARHMKWFEIPALYRVHEAPEPKKLRDFAKI 482 Query: 431 LKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLG 488 + G E + +L P + + + R A+ HFGL Sbjct: 483 VLLMGKRFKGSVEQIRPLQLQQLLDSFKDDPAYPVISTMMLRSMQKAKYDPRCLGHFGLA 542 Query: 489 LEAYATWTSPIRKYGDMINHRLLKAVIKG---ETATRPQDEITVQ-----MAERRRLNRM 540 LE Y +TSPIR+Y D+I HR+L G + QDE+ ++ +ER R Sbjct: 543 LEEYTHFTSPIRRYPDLIVHRMLHKYGFGTALDPEMMKQDELKMEEYGKLTSERERAAIE 602 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AER+V D A +++D+ G I +++ G V L +N + L D+ Sbjct: 603 AEREVEDMKKAEYMEDQIGKIA--EGVISGVTKFGFFVEL-ENTVEGLVHVQKL---TDD 656 Query: 601 LVCSQEN--GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + + +Y++ + + + + I V Sbjct: 657 YYHYDPDTLSLKGERTKKIYRLGQRVKIKVTGASKLHQEIDFDLV 701 >UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID=RNR1_LACLA Length = 817 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 151/660 (22%), Positives = 261/660 (39%), Gaps = 44/660 (6%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQK-SYFIPPPQMKKVMHGDRIIAVIHS-----EKE 69 G+ +A GFGF+ +DA++ F+ Q + GD + I + Sbjct: 66 EEAKVVISGIFRANAAGFGFVSIDAEEPDVFVARGQTAFALDGDEVFIEIDKNANALKGT 125 Query: 70 RESAEPEELVEPFLTRFVGKV--------QGKNDRLAIVPDHPLLKDAIPCRAARGLNHE 121 E++ + + VG + + + + + GL E Sbjct: 126 SAEGHVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKSRNKKIPYRVYLE-NEGLIPE 184 Query: 122 FKEGDWAVAEMRRHPLKG-DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 K E+ +P K ++ +T+ I DD + LA ++ E P V Sbjct: 185 NKA--IVRVEITHYPDKEFPQTMQGLVTEIIGQADDQGIDVLEVLASMDIVSEFPKEVLD 242 Query: 181 EML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 + +E + R D TID A +D+DDA+ AK L + +L V IAD + Sbjct: 243 QAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVS 302 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ E S LDK A R + Y+ +PMLP LS+ +CSL R +C M +S +G Sbjct: 303 HYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISPEG 362 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 + N + + I++ ++ YD V+ + IA+ V+++ ++ R Sbjct: 363 RVI-NYQISQSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRK 421 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + D + + I+ EKG ++I R IA R++E M+ AN A I Sbjct: 422 RRGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAERMIESFMLEANETVATHFEAHGLPFI 481 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEV-LTLDGFCKLRRELDAQP-TGFLDSRIRR 470 Y +H T G+ ++ + +++ QP L + + R Sbjct: 482 YRIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLR 541 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA-------TRP 523 A S HFGL E Y +TSPIR+Y D++ HRL++ + +G+T Sbjct: 542 SMQQARYSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTPANILQKWEDK 601 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 EI + R R AER+V A F+++ G + + I ++R GM + L +N Sbjct: 602 IPEIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVGEE--YEGIIASVTRFGMFIEL-EN 658 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSIIAR 641 + L + + QE I + +K+ I + + + T I Sbjct: 659 TIEGLVHISTL---KGDYFNYQERMLALIGERSGLTFKIGQPIKIKVVKADRMTGEIDFE 715 >UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_SULSY Length = 701 Score = 573 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 173/649 (26%), Positives = 281/649 (43%), Gaps = 27/649 (4%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 LK+++ + +G V+A E GFGFL D + FIPP +MK + GD ++A + Sbjct: 61 LKREIQEKENLIKGKVEAHESGFGFLIREDGEPDLFIPPIEMKYLFDGDIVLAEEKIYRG 120 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 ++ A+ +++E + VGK++ + +R + ++ I +E ++ V Sbjct: 121 KKEAKIVKVLERRVKTAVGKLKQEGNRYFVYLLDFVIPHKIYVDKKEAKKYEL--DNYVV 178 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV- 188 E+ R+P + + + + + + +++L E V Sbjct: 179 VEILRYPEPKVEA-KGRIIKDLGKVKNTQTVAEIVARKYDLPLTHSPEALKEAEKLPSVV 237 Query: 189 -----REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 R+DLT TID S D DDA+ + DK +L V IAD + ++ EGS +DK Sbjct: 238 KITKNRKDLTKQICFTIDPESARDHDDAVAIEK-EGDKYRLYVHIADVSHYVKEGSVIDK 296 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A R T YLP + MLP L+ LCSL+ E R C M + G + + + + + Sbjct: 297 EAFQRGNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVE-YDIYES 355 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 IESKAKL YDQ + + + + + ++ + ++ + + + + D P+ Sbjct: 356 VIESKAKLTYDQALGIILGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPE 415 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + + + G D+V R +ANRI+EE MI AN A+ + IY VH Sbjct: 416 SQILFDQYGNPYDVVPYERHLANRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKLEK 475 Query: 424 ADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEP 481 A L+ G V+ ++ + K+ P + R A S E Sbjct: 476 VMAFVDLIAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSPEN 535 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDEITVQMAER 534 HFGL E Y +TSPIR+Y D+ HRLLK IK E + D I Q +ER Sbjct: 536 IGHFGLASECYTHFTSPIRRYADVWVHRLLKKAIKKKFTKKDMEELPKKLDIIAKQCSER 595 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R+ AERD D L R LKDK G +F I + G+ + + +P L Sbjct: 596 ERVADDAERDALDILKLRILKDKVGE--KFEGIITGVMAVGLFIEIERYIIEGLVPIDSL 653 Query: 595 HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 E I + +++ D + V I +V +T+ I + V Sbjct: 654 PGK----FKYDEKNHQLIGDKMKFRLGDKVLVEIVKVDEDTKRIDLKLV 698 >UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZ06_9BACT Length = 759 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 150/655 (22%), Positives = 261/655 (39%), Gaps = 39/655 (5%) Query: 15 LHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVIHSE--KERE 71 L + PR G ++A + G+GF+ + +K F+P + + GD ++ + E + R Sbjct: 91 LPDRLPRLTGRLEANKDGYGFVIDPEGKKDVFVPAHALAGAIDGDTVVCHVSGEDARGRR 150 Query: 72 SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 +V F G + + + P ++ A +EG + E Sbjct: 151 EGVIVGVVAHGRKTFPGLLHRTPEGWYVKPKEAKIRHLFRVEAP---PPGTEEGTVVILE 207 Query: 132 MRRHPLKGDRS-----------FYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 + +P + + D + + +A P+ V Sbjct: 208 VTVYPAPLSDPAAHSSEELPNIPAGRILTVLGADGDPAIDTDLVIASFGFSTAFPEEVEA 267 Query: 181 EMLDE--------GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 R D +L+ VTID + +D DDA+ + D + L + IAD + Sbjct: 268 LAHRRAQEVPIVPDKERRDFRSLEIVTIDGDTAKDFDDAISIEEEDDGTVTLGIHIADVS 327 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 A++ GS LD+ RA + Y P +PM P LS+ + SL R + + +G Sbjct: 328 AYVLPGSALDREGFARATSVYFPDRVLPMFPEVLSNGVLSLNPETDRLARSVTARIDREG 387 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 + + + I S+ ++ Y +V L TG+ P+ ++ + ++ + R Sbjct: 388 QVL-SWTLDRSVIRSRMRMTYSEVHRAL--TGEPSPDYLPYENRLHTMWRVASLLRKRRM 444 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + D P+ +L +GE +DI+ PR ++++++EE M+ AN A LR++LG + Sbjct: 445 GKGSLDFDLPEPEIVLDLRGEPVDILRSPRYLSHQLIEEFMLLANTLVATRLRERLGTAL 504 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRF 471 + H P + L + L + GL EV+T ++ E P + + R Sbjct: 505 FRAHETPTPEKIENLYSFLASLGLPFTKPEVVTPRDLSRILEETKGSPLEHPVHYSVLRS 564 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL-KAVIKGETATRP--QDEIT 528 A P HFGL Y +TSPIR+Y D+I HRLL A G + P + Sbjct: 565 LKQARYDPSPLGHFGLAFPDYTHFTSPIRRYPDLIVHRLLDLATSSGMESLLPGSLSAVA 624 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 +ER R AER D+ RF+ G F I ++ G+ V L Sbjct: 625 QHCSERERKATEAERMAIDFKKVRFISKHLGES--FDGRITGVASFGLFVELSPFFVEGM 682 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSIIAR 641 IP +H + + +E+ T + V D + VT+A+V + Sbjct: 683 IP---IHMLGRDYYEYREDRHQIRGSRTGRTFSVGDAVRVTVAKVDFQRLRCDFV 734 >UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7Z3_9PLAN Length = 955 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 158/657 (24%), Positives = 277/657 (42%), Gaps = 34/657 (5%) Query: 9 AQLKQQL--HSQTPRAEGVVKATEKGFGFLEV-------DAQKSYFIPPPQMKKVMHGDR 59 A+LK++ + G K GFGF+ D + FIP + +GD Sbjct: 185 AKLKEKPSRRGKDKTVTGKFKRAAAGFGFVRPLDVTSRGDRTQDIFIPQNASQDAANGDI 244 Query: 60 IIAVIHSEKE--RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 + + S R+S E E++E +FVG Q + + D + A+P Sbjct: 245 VRVRLVSGGRSLRKSGEIVEILERDTHQFVGVYQEQRGSGVVEVDGRVF--AVPISVGDP 302 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 GD V EM R P A +T+ + + + + L + P+ Sbjct: 303 GAKGAAPGDKVVIEMVRFPSHTHEG-EAVITEVLGARGTPGIDTLSIMREYELPEAFPEA 361 Query: 178 VATEMLDEGLV-------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 V +E R D T +TID D DDA+ L QL V IAD Sbjct: 362 VLAASREEAEKFDESIGDRRDFTKTTIITIDPVDARDFDDAISLTKLESGNYQLGVHIAD 421 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 + ++ S LD+ A+ RA + YLP +PMLP +S++L SL+ ++VR + S Sbjct: 422 VSHFVKPKSVLDREARDRATSVYLPDRVLPMLPEIISNNLASLQPDKVRYAQTAIIEFSP 481 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVR-LLAQICQRRGE 349 +GT + EF+ + I+S + Y++V D+L + W+ + + ++ ++ ++ Sbjct: 482 EGTPLHS-EFYLSAIKSCRRFTYEEVDDYLADRQAWKKKLKPQVHELLGVMHELAMILRR 540 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 R + P+ + L +KGEV +++I+EE M+AAN AR L +K Sbjct: 541 RRLERGAIELSLPETKIDLDKKGEVSGAHLSKNTESHQIIEEFMLAANEAVARHLNEKEL 600 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRI 468 + +H D L ++ G+ D + + ++ +E+ P ++ + Sbjct: 601 PFLRRIHENPDLRKLQVLTKFVRELGIECD--SLESRFEIKRVIKEVAGAPEEHAVNYAV 658 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP---QD 525 R A S H+ L E Y +TSPIR+Y D+ HR+L+++I G+ Q Sbjct: 659 LRAMQKAIYSPAVEGHYALHSEHYCHFTSPIRRYPDLTIHRMLRSLIHGKKPAADFASQV 718 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 + +ER + + AERD+ +L + G++ A I + G+ V +D A Sbjct: 719 LLAEHCSEREQRAQAAERDLIKVKLLGYLSKRVGSE--MDAVITGVEEFGIFVMGIDLPA 776 Query: 586 IAFIPAPFLHAVRDELVCS-QENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 I L D + + +++ DV+ V++A+V ++ R + R Sbjct: 777 EGLIHIQSLED--DYYKFDSDTHSLTGRRAGNRFRLGDVLRVSVAKVDVDRRELDFR 831 >UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC4_9BACT Length = 682 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 155/639 (24%), Positives = 289/639 (45%), Gaps = 25/639 (3%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAE 74 + G + G+GFL D + + FIP +M MHGD++ + + ++ Sbjct: 55 KNTPTEITGKLDLHPNGYGFLSHDGEGRDIFIPKNKMNGAMHGDKVTISPETFRGKQEGR 114 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRR 134 E+VE + VG+++ + +VP + I + + ++K+ + E+ Sbjct: 115 VVEIVERSEQKIVGRIENLAGIMRVVPMTRKVNTYIYLTSNK---VQYKDDTVVLVELTH 171 Query: 135 HPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV-------ATEMLDEGL 187 P +G + ++ + + D + + L R++++K P+ + + E++ Sbjct: 172 FPSEGS-AARGQVNKVLGMLSDPRIEDEIVLNRYDIDKVYPESIEKYVEKTSPELMKNPG 230 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL +L VTID + +D DDA+ + + + L V IAD ++ G+ +D A Sbjct: 231 ARTDLRSLPTVTIDGETAKDFDDAISIEKTEN-EFILYVHIADVCHFVQPGTPVDNEAYR 289 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + Y P F +PMLP LS+ LCSLR NE R L ++T + DG + F+ + I S Sbjct: 290 RGTSFYFPEFAVPMLPESLSNGLCSLRPNEDRLALTAKITYTKDGQRKKAY-FYRSIINS 348 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 +L Y+ V+D LE + + + +AI + ++ ++ + R ++ D P+ F Sbjct: 349 DRRLTYNSVNDVLE--KNTKEKDKAILDLLKDSKELAGKIMVRRAKAGMLDFDFPETTFE 406 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 L E GEV I+ R +++RI+E MI AN + L +Y +H DP + Sbjct: 407 LDENGEVTAIIPAERHLSHRIIEHFMIEANEVVSEFLEKHTKKSVYRIHDKPDPMKLEDF 466 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFG 486 A L T G+ V ++V T K+ ++ L + R + AE +T HFG Sbjct: 467 AGLAATFGVDVTVKDV-TPKDVKKINEAVNNSDYADILGGALVRTMAKAEYNTNNIGHFG 525 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGET--ATRPQDEITVQMAERRRLNRMAERD 544 L ++Y +TSPIR+Y D++ HRL+ + G + D+ E + AERD Sbjct: 526 LASDSYTHFTSPIRRYPDLMVHRLICNTLFGTEYHSEAGLDDACKLSTENEQRAENAERD 585 Query: 545 VGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS 604 + + ++L D F A ++ + G+ + + + + D Sbjct: 586 ISKFKKLKYLAKHV--DEPFGAVVMSVGAFGLNIYIESVMLKGTVSLESIPG--DVYQFM 641 Query: 605 QENGTVQIK-GETVYKVTDVIDVTIAEVRMETRSIIARP 642 ++ V+ + +++ D+I+V + + M+ + P Sbjct: 642 KKEQIVRGRVTGKMFRAADLIEVMVERIDMDMQEAYFFP 680 >UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37_ANAPD Length = 708 Score = 568 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 158/639 (24%), Positives = 269/639 (42%), Gaps = 35/639 (5%) Query: 24 GVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEKERE---SAEPEEL 78 G + + G+GF D + + FI M K + DR+ + KE+ E+ Sbjct: 71 GKISMAQAGYGFFISDNRDFEDVFIKRDNMNKAHNNDRVKIELIKRKEKGRKAEGRVIEI 130 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 +E VG Q ++PD + I A ++ K D V E+ +P Sbjct: 131 IERAKDEIVGSFQKNKGFGFVIPDDRSYGEDIFI--AEKFFNKAKNKDKVVVEIINYPKD 188 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVRE 190 G + + I +D + + H L + E L E R+ Sbjct: 189 G--KPEGRIKEIIGGKNDKNIEILSLIRAHGLPYQFSKETKKESLYVKDTVNEIELEGRK 246 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL L VTID ++D DDA+ + ++ L V IAD ++ +G+ +D A R Sbjct: 247 DLRDLFTVTIDGRDSKDFDDAISIEKNGEN-YDLYVHIADVAHYVKKGTAIDNDAYERGN 305 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + YL IPMLP LS+ +CSL NE R ++ +MT++ G + DN EF+ + I S + Sbjct: 306 STYLFNIVIPMLPEVLSNGICSLNPNEDRLAISLKMTINDKGKVIDN-EFYESVINSDHR 364 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 LVYD V+ +L+ + E E I E++R+ ++ + R + + + + + E Sbjct: 365 LVYDDVNAFLDKNDENVYEDELIKEKLRIFDELREILNTMREKRGSIDFNFSESQIDVAE 424 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 G VL+I R N+++EE M+AAN A + IY +H ++ Sbjct: 425 DGRVLNISNFERGSGNKMIEEFMLAANETVASLFAYMDFPFIYRIHEKPKEEKIESFKKA 484 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGL 489 L T G ++ + L F ++ E++ + ++ + R A+ S HFGL Sbjct: 485 LNTMGYNIRGND-LHPKDFQQILEEVEGKDVESVINILMLRTMQKAKYSEHRDMHFGLST 543 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI-------TVQMAERRRLNRMAE 542 Y +TSPIR+Y D+I HRL+K I + + Q + ++ R + E Sbjct: 544 SFYTHFTSPIRRYPDLIVHRLVKKFIHNKLTSLNQTSLEKTITNNADHLSMTERRSEDCE 603 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELV 602 RDV D L +++ G + F I I+ G+ + L DN D Sbjct: 604 RDVEDLLKCKYMTRFIGDE--FYGNISAITEFGIFIEL-DNTVEGL---FMYKFSNDRYE 657 Query: 603 CSQENGTVQIKGETV-YKVTDVIDVTIAEVRMETRSIIA 640 ++ + + Y + D + + + +V R+I Sbjct: 658 YLEDKMKAFNTDKKIFYSIGDRVKIRVMDVDTYQRNIDF 696 >UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHY2_RHOM4 Length = 751 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 161/668 (24%), Positives = 278/668 (41%), Gaps = 43/668 (6%) Query: 2 FQDNPLLAQLK---QQLHSQTPRAEGVVKATEKGFGFLEVDAQKS--YFIPPPQMKKVMH 56 + L+A++K + R EG+++ +G+GF+E++ Q+ +I M + Sbjct: 69 LEHQHLVARVKGGRYTYERRPYRVEGILRVHPQGYGFVEIEGQEDEDIYISEAHMGTALD 128 Query: 57 GDRIIA---VIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 GDR++ R E +++E + VG + +VPD P L I Sbjct: 129 GDRVLVGLAAPARGDRRREGEVLKVLERRRKQAVGTFYPRGAYAFVVPDDPRLTRDIYV- 187 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 R + + GD V + R S + + + D V ++ Sbjct: 188 -PREAFNGARAGDKVVVSIDRF-DDPKASPEGRVLEVLGPASDPRVQVLALALSKDVRTG 245 Query: 174 APDGVATE---MLDEGLVRE-----DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 P+ E + D RE DL TID + +D DDAL + LP+ +++ Sbjct: 246 FPEAALKEAERIPDTIPEREYRRRLDLRDRAVFTIDPSDAKDFDDALHLRRLPNGHIEVG 305 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 V IAD + ++ GS LD+ A R + YL IPMLP +LS+ +CSLR E + + Sbjct: 306 VHIADVSYYVRPGSALDEEAYQRGTSVYLVDRVIPMLPEKLSNQVCSLRPGEDKLTYSVL 365 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 M L+ + + I S+ + Y++ ++ +AE VRL ++ Q Sbjct: 366 MELTPSARVV-RYQIRETVIHSRQRFTYEEAQAIIDGA------DHPLAEPVRLAHELAQ 418 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL- 404 + + R + D P+ + L E G + I + R A++++EE M+ AN A + Sbjct: 419 KLRKARMEAGAIDFDLPEVKVELDEAGNPIRIYRKERLAAHQLIEEFMLLANRLVAETIG 478 Query: 405 -RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL--DGFCKLRRELDAQPT 461 R + +Y +H D LA ++ G H++ E T+ +L + + P Sbjct: 479 KRTEAPPFVYRIHDRPDAEKIRQLAQYVRVFGYHLELTEDGTVSSKALNELLQHVKGTPE 538 Query: 462 G-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG--E 518 ++ R + A ST+ H+GL + Y +TSPIR+Y D++ HRLLK +K + Sbjct: 539 EPVIEEAALRAMAKARYSTQNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLKQYLKKAEK 598 Query: 519 TATRPQDEI---TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 DE+ +ER R AERD + ++++ G RF + ++ G Sbjct: 599 APVVDADELEARCRHCSERERAAEEAERDSVRFKQVQYMQQHVGE--RFRGVVSSVTNFG 656 Query: 576 MRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIK--GETVYKVTDVIDVTIAEVRM 633 + V L D + + D+ E Y+ DV++V + Sbjct: 657 VFVELEDVLVEGLVHVRDMG---DDYYEYDERRYTLRGMYSGKRYRPGDVVEVVVVRADP 713 Query: 634 ETRSIIAR 641 TR I R Sbjct: 714 ATRQIDLR 721 >UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_DEIGD Length = 1182 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 156/668 (23%), Positives = 275/668 (41%), Gaps = 47/668 (7%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 + L G +A+ GFGF+ D + +++ P + +GD ++ + Sbjct: 308 RRRTYGLPEAMSLVRGRFQASPTGFGFVIPDAGGEDFYVAPEDTLEAWNGDTVLVRMEGR 367 Query: 68 K---------------ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC 112 A +V+ VG ++ + D P + I Sbjct: 368 GDSGRSPGPRRGQRGDGSPRASVARIVQRAYRHLVGTLEFSKGHPILKADDPRARHRILL 427 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 G VAE+ G+ + ++ + + DD + ++ L Sbjct: 428 LPEGLEGLA--SGARVVAELYWPEQTGEDEVFGQVIRVLGEQDDPATETEAVIVKYGLRG 485 Query: 173 EAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 E P V E + + R DL + T+D +D DDA+ + P+ + Sbjct: 486 EFPADVLEEANAIPTRIPPESLVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVV 545 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD + ++ EG+ LD+ A RA + YLPG +PMLP LS+ +CSL E R + Sbjct: 546 GVHIADVSHYVREGTPLDQEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPFEDRLTVTA 605 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 + LSA+G I D ++ + I SKA+L YD+V + E T + + + LL +I Sbjct: 606 LIELSAEGDILD-VKLAPSVINSKARLTYDEVQAYSEATSTLPEHARHLEGDLHLLLKIT 664 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + + R + + + +G G ++++ A ++E+ M+ AN A L Sbjct: 665 SKLRQKRLREGSLDFKLREVKVDVGPDGR-MELIPIHEETARGMIEDLMLLANKVVAHYL 723 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGF 463 ++ ++ +H A + GL E T + + + + P Sbjct: 724 IERGIPTLFRIHEEPTLQRFQEATAAIARLGLAFPGGE-PTPQAYQAVLKAVRGTPRESV 782 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG--ETAT 521 +++ + R A+ + E HFGL Y +TSPIR+Y D+ HR+LKAV+ G + + Sbjct: 783 VNTLLLRSLQQAKYAGENLGHFGLAFAEYLHFTSPIRRYPDLFVHRVLKAVLSGDLKAGS 842 Query: 522 RPQDEITVQM-------AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 R E+ Q+ +ER R AERD+ + A++ ++ G RF+ + + Sbjct: 843 RAVAELRSQLPAMGDHTSERERKAAEAERDLTKYYQAKWAQEHLGE--RFSGNVTGVVSS 900 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIK--GETVYKVTDVIDVTIAEVR 632 G+ V L DNG + L D+ E+ + G +++ D I VTI++V Sbjct: 901 GLFVAL-DNGVEGKLHISNL---DDDYYIYLEDAQMLRGRSGGRTFRLGDPITVTISQVN 956 Query: 633 METRSIIA 640 R I Sbjct: 957 PLARQIDF 964 >UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9_ACIAD Length = 817 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 159/657 (24%), Positives = 274/657 (41%), Gaps = 25/657 (3%) Query: 1 MFQDNPLLA-QLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDR 59 M +D L K Q + P + V KGFG +D Q +P +++ V +GDR Sbjct: 77 MVRDGQLSKDGFKFQPIGEQPTFDATVYINNKGFGSAHIDGQNDLLLPERELRLVFNGDR 136 Query: 60 IIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 + S K + E+ + + + +GK+ + P P IP Sbjct: 137 VKVRQTSVDRKGKAWGFITEVTQHRVKQLIGKLAVHEGEYFLQPSAPNAHQPIPLEKELI 196 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 + + K G+ + +P + + S + Q ++ D + T+ L E P+ Sbjct: 197 EHAQAKVGENLRVAIDDYPTREEFS-TGHIIQSMSDKADTEIIIPQTILEFGLPYEFPEE 255 Query: 178 VATEML-------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 V + + R DL L VTID D DDA++A+ +++VAIAD Sbjct: 256 VVKDAESFKEPSKKDIEGRIDLRDLPLVTIDGEDARDFDDAVYAEKRSGGGYRVVVAIAD 315 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 + ++ G LD A+ R + Y P F +PMLP LS+ LCSL + R + C + LS Sbjct: 316 VSHYVRLGKPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLKLSR 375 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 G + + EF+ + + SKA+L Y QV ++ + D P+ + I + + L Q+ Q Sbjct: 376 AGRVM-SYEFYPSVMHSKARLTYTQVGNYFDGQTDAIPDDKNIQKSLNTLFQLYQTLKGL 434 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R + + + E G + +I+ R A++++EE M+ AN+ AA Sbjct: 435 RAKRHAMEFETIETYMTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEFSLQHDIP 494 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE-LDAQPTGFLDSRIR 469 +Y VH + + + +K GL + T + ++ D + + + Sbjct: 495 MLYRVHEAPEFSRIQKVKDFVKLLGLPFP--DQPTQADYQRVIEATKDRIDAPSIHAVLL 552 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP---QDE 526 R A + H+GL EAY +TSPIR+Y D++ HR +KA ++ + D+ Sbjct: 553 RSMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLQQKPYPLSGAALDD 612 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 Q + R A R V WL ++K G + F I ++ G+ V L D Sbjct: 613 AGEQFSRTERRADEASRSVTTWLKCHYMKQHLGEE--FIGIISAVTEFGLFVTLKDLYVD 670 Query: 587 AFIPAPFLHAVRDELVCSQE--NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 I L D+ + V ++ + D + + +A V ++ R I Sbjct: 671 GMIHVSQLG---DDFFLYDQASQSLVGQNRGQIFGLGDEVKIKVAAVNLDERKIDFE 724 >UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=B9XG02_9BACT Length = 740 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 161/653 (24%), Positives = 271/653 (41%), Gaps = 35/653 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKE 69 + L + G ++ +G GFLE D K + +P + DR++ Sbjct: 56 RFILPQEADLIPGRIRINRQGKGFLEADDPKLPTIVVPEHATGTAFNNDRVLVRRDVRYR 115 Query: 70 RES--------AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHE 121 S + ++E T+ VG Q N L ++PD P + I R + Sbjct: 116 GRSRIFQEEETGKVIRILERERTQLVGTFQSSNRFLYVIPDDPRIPHDIYVTEPRDVGRR 175 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 GD V E++ + + + E+ + + D+ V L ++NL P V E Sbjct: 176 PNLGDKVVVELKLWESR-ELNPEGEIIEVLGAPDEEGVDMLSVLRQYNLPLHFPKTVLQE 234 Query: 182 ML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + RED A VTID +D DDA+ +A P+ +L V IAD + Sbjct: 235 AHAIGNQIDERDIAGREDCRAHTVVTIDPVDAKDFDDAICLEAAPNGHWKLWVHIADVSH 294 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ GS LD+ A+ R + YL IPMLP LS++LCSL+ R LSA+G Sbjct: 295 YVKVGSALDEEAQKRGNSTYLVDRVIPMLPEALSNELCSLKPGVERLTKCVEFLLSAEGK 354 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 + + F+ A I SK + Y++V + L+ E E + + QR R Sbjct: 355 VIRS-RFYPAVIHSKRRFTYEEVLEALQRKPAGPIE-----EMLHHANTMAQRLRRARMQ 408 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 + D P+ + L E+G++L I I+++++EE M+ AN A L +Y Sbjct: 409 AGSLDLDFPESKIRLDEQGKILRIDRVENDISHQLIEEYMLLANEAVAGKLMALDRQTVY 468 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQ 472 +H D + +H + + KL ++L++ P G L + Sbjct: 469 RIHEPPDDKRLQEFREDVLSH--QIQCGNLTNRHEVQKLLQKLNSLPIGPALKIGFLKSL 526 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMA 532 A + EP H+GL Y +TSPIR+Y D++ HR L + + A + ++ Sbjct: 527 MRARYAVEPLGHYGLAKAKYTHFTSPIRRYADLVVHRSLFQKGREKVAAESLRNVAEHIS 586 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKA--GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 + R + AERD D +L+ + G R+ + D+ G V + G +P Sbjct: 587 DTERNSADAERDSKDVKLFAYLQSQLDSGRPQRYPGLVTDVRNFGFFVDVPGLGMSGVVP 646 Query: 591 APFLHAVRDELVCSQ--ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 L + D+ N + + V+K+ D ++V I +V + + R Sbjct: 647 ---LSTLPDDFFQFDSNRNQLIGRRSRRVFKLGDKVEVQIHKVDKFKKQVDFR 696 >UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 Length = 744 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 169/643 (26%), Positives = 271/643 (42%), Gaps = 40/643 (6%) Query: 19 TPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVI--HSEKERESAEPE 76 R +G + G+GF+ + + F+PP GD + A + R E Sbjct: 55 ANRVQGPLSLHRDGYGFVRLP-EGDLFVPPGYTGDAWPGDLVEARVMPPGRDGRPWGVVE 113 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 +++ R VG + + R ++PD P L + A GL K G V ++ Sbjct: 114 RVLKRARERLVGTLDFRKGRALLLPDEPNLPE--LPLAPEGLE-GLKRGSRIVVQV---- 166 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLV 188 + Y Y+ G+ +A++ L E P+ V E E Sbjct: 167 -HYGKRPYGTFLAYLGEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRR 225 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 RED L TID +D DDA+ + LP ++ V IAD + ++ EGS LD+ A +R Sbjct: 226 REDFRGLRVFTIDGVDAKDFDDAIHVERLP-GGYRIGVHIADVSHYVKEGSLLDQEAFLR 284 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLPG +PMLP LS+ +CSLR E R VL+ + L+ D ++ + F I S Sbjct: 285 GTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVK-RVRFREGVIRSV 343 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A+L Y +V + E G E +AE +RLL + QR E R + P+ + + Sbjct: 344 ARLTYTEVEAFAEGFG-LPEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFAFPEVKVEV 402 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 GE+GE+ ++ + A ++EE M+ AN A L K G++ VH + L Sbjct: 403 GEEGELH-LIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLR 461 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGL 487 L G + + L+ K +P + + R A + E HFGL Sbjct: 462 QALARLGYTLPPK--LSGHALQKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHFGL 519 Query: 488 GLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-------ITVQMAERRRLNRM 540 +E Y +TSPIR+Y D++ HR+LKA ++ + I +E R Sbjct: 520 AMEHYLHFTSPIRRYPDLVVHRVLKAALRRTLTPARKARWQEAFPAIAEHASEMERKAEA 579 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AER++ + A++ + G RF ++ ++ G V L NG + L Sbjct: 580 AERELTKYYMAKWAELHVGE--RFLGKVTGVANFGAFVTLP-NGVEGLVRLEALGP---- 632 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 S+E + ++ D ++V IA R + PV Sbjct: 633 YTYSEEAMALLGPKGRRIRLGDEMEVRIAGANPRLRQVDLLPV 675 >UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMX4_9FIRM Length = 697 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 150/650 (23%), Positives = 272/650 (41%), Gaps = 32/650 (4%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 K ++ + +G + T KG F + FIP ++ H D + I EK Sbjct: 56 YKYSIYQKKETLKGKISFTTKGNAFFISEEDIDDIFIPKKELNHANHNDDVEIEIIKEKR 115 Query: 70 ---RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + +++ VG + +VPD I + +G + K D Sbjct: 116 MNSKAEGRVLKVLNRNSNLIVGTFTENKNFGFVVPDDIKCNYDIFIK--KGDKNSAKTDD 173 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD-- 184 V ++ P K ++ + + I D L + + + + E+ + Sbjct: 174 KVVCKLVEFPDK-KKNPEGVVIEVIGNKKDKNAQIISLLKDMEIPYKFSNKINKELEELT 232 Query: 185 ------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 E R D L VTID A +D DDA+ +D L V IAD + ++ + Sbjct: 233 QTDIKKEIKNRVDFRNLFTVTIDGADAKDFDDAISIDKKDND-YVLYVHIADVSHYVKKD 291 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 SKLD+ A R + YL + +PMLP LS++LCSL N + + +M + +G +++ Sbjct: 292 SKLDREAYKRGNSVYLIDYVVPMLPEVLSNNLCSLNPNTDKLSITVKMIIGKNGNVKE-Y 350 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 +F+ + I S +LVYD V+++LE + + E + E + ++ ++ + R N + Sbjct: 351 KFYESVINSNYRLVYDDVTNFLEGKKHFY-DDETLKENLLVMKELDEILTNKRINRGTID 409 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 + P+ G+ G+V +I + +ANRI+E MI AN + + IY +H Sbjct: 410 FNFPEIAITFGKDGKVENIAKKENGLANRIIESFMICANEVVGKHFGELDIPIIYRIHSK 469 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE-LDAQPTGFLDSRIRRFQSFAEI 477 + L L + + ++++ ++ + D + F++ I R + A+ Sbjct: 470 PPEDKLEILKNNLSRLNIKMKPIDMISSKYLSEIIDQFKDTNKSDFINYSILRSMTKAKY 529 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-----ETATRPQDEITVQMA 532 S HFGL Y +TSPIR+Y D+ HR LK + + D + + Sbjct: 530 SPNIDIHFGLATFLYCHFTSPIRRYADLTVHRTLKNYLHSNIEIPKNYISYLDITSNHIN 589 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP 592 + L AER + D F+K+K G F IV ++ G+ V+L +N + Sbjct: 590 DTEVLAIDAERKLEDIKKVEFMKNKIG--QVFKGIIVSVTSFGLFVQL-ENTVEGLV--- 643 Query: 593 FLHAVRDELVCSQENGT--VQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 + D+ E + + + V+ + ++V +A+V T I Sbjct: 644 KYEDIMDDYYEFDEQTLTAIGRRTKNVFDIGMGVEVIVAKVNEITNEINF 693 >UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9BACT Length = 765 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 147/662 (22%), Positives = 260/662 (39%), Gaps = 39/662 (5%) Query: 13 QQLHSQTPRAEGVVKATEKG-FGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKER- 70 L+++ EG G FL D F+ ++GD++ + ++ Sbjct: 73 YTLNTKGQVQEGTFIRKANGKNTFLPEDGGTPVFVSERNSMAALNGDQVRVQFMARRQNH 132 Query: 71 -ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 + A +++ FVG+++ + D +V L I + K D A+ Sbjct: 133 IKEAMVIAILQRKKDTFVGRLRVEKDIAFLVTQENLFIHDILIPKKK--LKGGKTDDRAL 190 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD----- 184 ++ + P ++ E+ + D+ V LA++ L + P V Sbjct: 191 VKITKWPDADHKNLVGEVVDVLGEAGDNDVEMNTILAQYGLPYKYPKRVEDAAKKISAEI 250 Query: 185 ---EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + RED + TID +D DDAL + L + ++ V IAD + ++ EG + Sbjct: 251 TAQDYAEREDFRDVWTCTIDPRDAKDFDDALSIRKLESGQWEVGVHIADVSHYVKEGDII 310 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 D+ A+ RA + YL IPMLP L + +CSLR +E + +C L + ++ + Sbjct: 311 DREAQQRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSCIFNLDDEANVK-SYRIV 369 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEA------------IAEQVRLLAQICQRRGE 349 I+S + Y++ LE+ G E AEQ+ L ++ + Sbjct: 370 HTVIKSNRRYAYEEAQQILEDNGVVDGTGEPAPDPGKAGYKGENAEQIITLDRLAKLIRG 429 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR-----VL 404 R V D + F + EKG+ + + + AN+++EE M+ AN A Sbjct: 430 RRMKAGSVKFDSEELHFDIDEKGKPIRCYFKRSKDANKLIEEFMLLANKTVAESVGIVKK 489 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL--TLDGFCKLRRELDAQ-PT 461 K Y VH DP + L G + + T KL E+ + Sbjct: 490 GKKAKTLPYRVHDNPDPQKFENLREFTAKFGYKLKSASTKGATARALNKLMDEVQGKREE 549 Query: 462 GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 + + R A+ +T HFGL + Y +TSPIR+Y D + HRL+ G + Sbjct: 550 KVIQTIALRSMMKAKYTTHNIGHFGLAFDYYTHFTSPIRRYPDTMVHRLITRYQNGGRSA 609 Query: 522 RPQ--DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 + +E+ ++ + + AERD + F+ + G + A I I G+ Sbjct: 610 NKEHYEELCEHCSDMELVAQNAERDSIKYKMVEFMSEHIGEC--YDAHISGIQSFGIYAE 667 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 + +N IP L + V + VY++ D I + +A+ +E R + Sbjct: 668 IDENHCEGMIPMRDLDDDYYDFDEKN-YCLVGRRRHHVYQLGDPIRIQVAKADLERRQLD 726 Query: 640 AR 641 Sbjct: 727 FA 728 >UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQN3_9PLAN Length = 770 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 157/669 (23%), Positives = 270/669 (40%), Gaps = 38/669 (5%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK-------SYFIPPPQMKKV 54 + + L+ + + G T KGFGF+ ++P + Sbjct: 56 YGASHLIKRANAENAKAAQTIVGGFHRTAKGFGFVRPLGTPKSAERTADIYVPAKRTSDA 115 Query: 55 MHGDRIIAVIHSEKE-----RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA 109 +GD + + + + E E+VE RFVG + + + D + Sbjct: 116 ANGDTVRIRMFRTRGMNGESKLCGEVIEIVERETHRFVGTYNEAHGQALVQVDGNVFTQP 175 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 I + D V E+ R P + + + V + ++ Sbjct: 176 ISVGDP--GVKGARLDDKVVIEIVRFPSHFHDG-EGVIVEVLGARGAPGVDLLSVMREYD 232 Query: 170 LEKEAPD---GVATEMLDE-----GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDK 221 L +E P+ VA EM D G R D T +TID D DDA+ L + Sbjct: 233 LPEEFPEAALEVAREMADAFDESIGEDRRDETGETIITIDPFDARDFDDAISLTKLDNGH 292 Query: 222 LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPV 281 L V IAD ++ EGS LD A+ RA + YLP IPMLP +S++L SL+ N++R Sbjct: 293 WLLGVHIADVAHFVPEGSALDTEARNRATSIYLPDKVIPMLPEVISNNLASLQPNKIRYA 352 Query: 282 LACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVR-LL 340 ++ + DGT + E F + I S + Y++V ++L + W+ + Q+ + Sbjct: 353 KTAKIEFTPDGT-RVHTEVFNSAIRSVRRFTYEEVDEYLADRDAWKKKLTPPVHQLVGDM 411 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 ++ E R + P+ + L G V E +++I+EE M+AAN Sbjct: 412 HELAMTLRERRFQRGSIELLMPELKLDLDNDGAVTGAHVEKNTESHQIIEEFMLAANEAV 471 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP 460 A L ++ F + VH DP +AL ++ G+ D + + + ++ P Sbjct: 472 ADKLHNQELFFLRRVHDSPDPRKLEALTEFVRDVGIECD--SLQSRFEIIRALDKVKGLP 529 Query: 461 T-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 ++ R A S E H+ L E Y +TSPIR+Y D+ HR+ + G+ Sbjct: 530 EQAAVNYATLRSMKKAVYSPEEIGHYALASECYCHFTSPIRRYPDLTIHRMYNDLATGKK 589 Query: 520 ATRPQDEITV---QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + D + ++R + AERD+ L +K G + A I + G+ Sbjct: 590 PVQDYDAMVAEGEHCSQREQRAASAERDLVKIKLLNHLSEKIGME--MEAVITGVESFGL 647 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQE--NGTVQIKGETVYKVTDVIDVTIAEVRME 634 V+ ++ A I L +D+ + V + +++ DV+ V+IA V +E Sbjct: 648 FVQGLELPADGLIHIDAL---QDDYYHYDRTTHSLVGNRDGNAFRLGDVLKVSIARVDLE 704 Query: 635 TRSIIARPV 643 R + R + Sbjct: 705 KRELDFRLI 713 >UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU Length = 756 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 157/654 (24%), Positives = 271/654 (41%), Gaps = 36/654 (5%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVI--HSEKE 69 L +Q G + ++GFGF+ V+ +K FI P +K + D ++ + HS++E Sbjct: 58 YYLPNQFGMILGTLTINKRGFGFVVVEDQEKDIFISPDDLKDAFNKDTVLVELKKHSDEE 117 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R +++ TR VG+++ + D P+ I R H G Sbjct: 118 RPEGRVIRVIKRGQTRLVGEIKKGKRDCFVDVDDPMFDKPIFVD--RAHLHGAMPGHKVQ 175 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD----- 184 E++ + ++ + + +D + + H+ E P V ++ + Sbjct: 176 VEIKTY----KPILKGDVVKILGHRNDPGIDILSIVYEHDAPVEFPQAVYDQIENIPDSL 231 Query: 185 ---EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + R DL VTID +D+DD + K L + L V IAD + ++ E S L Sbjct: 232 EGIDIGQRIDLRDEVVVTIDGDDAKDLDDGISLKKLDNGHYHLGVHIADVSYYVTEESPL 291 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK A R + YL IPMLP +LS+ +CSL + R ++C M + +G + ++ + Sbjct: 292 DKEAFARGTSIYLADRVIPMLPHKLSNGICSLNPHVDRFTISCFMEIDENGEVVEH-DIV 350 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 A I S ++ Y V+ L+ Q + + + L+ ++ + + D Sbjct: 351 PAVINSTERMTYTNVNKILDGDQTLQLQYSHVKDLFFLMQELAMILQAKKARRGAIDFDV 410 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 + + ++ KG D+V R ++RI+EE M+ AN A + IY VH P Sbjct: 411 KEAKVLVDSKGNTTDVVLRERGASDRIIEEFMLLANETVAEHFKWLELPFIYRVHENPKP 470 Query: 422 ANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEIST 479 + + KT G + E + + P + + + R A Sbjct: 471 KKLLQFSGIAKTLGYTIKGSLENVYPGELSNIIEVSKDTPEHTIIATLLLRCMQKARYDE 530 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP--------QDEITVQM 531 + HFGL E Y +TSPIR+Y D+I HRL++ + R EI +Q Sbjct: 531 QCLGHFGLADEYYTHFTSPIRRYPDLIVHRLIRKYMFENRLDRRTIMHYQELMPEIALQT 590 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 + R R M ER+V D A F++ + G + F I ++ G V L DN + Sbjct: 591 SAREREAIMIEREVDDMKIAEFMEKQIGEE--FEGIISSVTNFGFFVEL-DNTIDGLVHV 647 Query: 592 PFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVRMETRSIIARPV 643 L D+ E I T V+K++D + V ++ + +S+ V Sbjct: 648 TDL---TDDFYFFDEKNIRYIGQRTGKVFKMSDRVKVRVSSASKKDKSVDFEIV 698 >UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q048G6_LACDB Length = 789 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 161/668 (24%), Positives = 276/668 (41%), Gaps = 49/668 (7%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEK- 68 + QL + EGV +A +KGFGF+ +D ++ FI K + GDR+ I + Sbjct: 63 RYQLAKENTEVEGVFRANDKGFGFVRLDDEEADDVFINSDATKLALDGDRVKVKITAGGN 122 Query: 69 ----ERESAEPEELVEPFLTRFVGKV--------QGKNDRLAIVPDHPLLKDAIPCRAAR 116 + + EE++E + VG+ + + ++P + K + Sbjct: 123 PWNGKGPEGQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVIPTNKKFKKYRVYVSEN 182 Query: 117 GLNHEFKEGDWAVAEMRRHPLKG-DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 GL + GD ++ +P + + + I +D V +A H++ E P Sbjct: 183 GLIP--QMGDMVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIMSIVAEHDIRTEWP 240 Query: 176 DGVA----------TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 + TE R D+T VTID ++D DDA+ L + L Sbjct: 241 EDALEQANAIPDHVTEEERHEAGRRDITDQPAVTIDGDDSKDFDDAVVLWKLDNGNYHLG 300 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 V IAD ++ EG+ LD+ A R + YL IPMLP LS+ +CSL R VL+C Sbjct: 301 VHIADVAHYVKEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCD 360 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN---TGDWQPESEAIAEQVRLLAQ 342 M ++ +G + + + A + S +L Y++V+ L D + + + ++ +A Sbjct: 361 MEITPEGE-RVSYDIYPALMRSHGRLTYNKVNQALRADVPDSDLEDKYVKVRPMLKDMAA 419 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 + + + RH + + P+ + I+ EKG+ +DIV R A +++E M+ AN A Sbjct: 420 LHEVLYKKRHARGAIDFEEPEAKIIVDEKGKPVDIVLHSRGTAEKMIESFMLLANETVAE 479 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQP 460 K +Y VH + GL+V D ++ LD + + L Sbjct: 480 AYYRKKVPFLYRVHETPEADRISRFFEFCSAFGLNVKADPNDIKPLDLQKVVTKTLGTSE 539 Query: 461 TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK---- 516 + + R A S +P HFG+ + Y +TSPIR+Y D + HR++ A ++ Sbjct: 540 ESVVQMMMLRSLKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMVHRMIHAYLEEGMG 599 Query: 517 ---GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 E E Q + + R + ER D ++ D+ G +F A + ++ Sbjct: 600 DDVKEHFKEELSEAADQTSMQERRSIDTERATNDLKMTEYMADQVGN--KFEAVVSSVTS 657 Query: 574 GGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT--VQIKGETVYKVTDVIDVTIAEV 631 GM V+L +N I L +D+ E YKV I V + Sbjct: 658 FGMFVQL-ENTVEGLIHISNL---KDDYYSYDEKSMTLTGRTTHKKYKVGMPIKVVLTNA 713 Query: 632 RMETRSII 639 +E + Sbjct: 714 NVEQHQLD 721 >UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6VM99_LACPJ Length = 804 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 157/658 (23%), Positives = 270/658 (41%), Gaps = 36/658 (5%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVI-----HS 66 +L +T EG +KGFGF+ D +I P + + GD + I Sbjct: 63 FKLVQETKTVEGSFHGNDKGFGFVRYDPDLPDIYINPDNTQFAITGDDVAVEIIRPARPG 122 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDR----LAIVPDHPLLKDAIPCRAARGLNHEF 122 + +V+ T+ VG D ++ L +GL+ Sbjct: 123 SDRGPEGKIVSIVKRNYTQIVGAYTPSTDEDGIIGSVEIKDKKLSKYQLLITDQGLHPT- 181 Query: 123 KEGDWAVAEMRRHPL-KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 EG+ +AE+ +P + Q I DD + + +H++ P+ V E Sbjct: 182 -EGEVIIAEVAAYPDAQHPTRMIGIAKQVIGSVDDPGMDVLQVVYQHDVPSVFPEEVTDE 240 Query: 182 ML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 +E + R D+T VTID A ++D+DDA+ A LP+ L V IAD + Sbjct: 241 ANRIPDYVTDEEKVGRVDITDQPLVTIDGAESKDLDDAVVAWRLPNGNFHLGVHIADVSH 300 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ E S+LD+ A R + YL IPMLPR LS+ +CSL + R ++C M + G Sbjct: 301 YVTENSELDREAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPDVERLAMSCEMEIDQTGE 360 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 I ++ + F + I S A++ YD V+ LE + + + + + + + + R Sbjct: 361 IVNH-KIFQSVIRSHARMTYDAVNQILEAHDPKTREKYADLVDMFDTMGDLHRILYKHRR 419 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + + D + + I+ E G +DI R +A R++E M+AAN A+ I Sbjct: 420 HRGAIDFDDNEAKIIVDEAGHPIDIQLRVRGLAERMIESFMLAANETVAKNYSQLKVPFI 479 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEV-LTLDGFCKLRRELDAQPTGFLDS-RIRR 470 Y VH D + + G+ V + + +++ +P + S + R Sbjct: 480 YRVHETPDSDRMLSFFEFVTNFGVSVKGSSKDVKPKMLQDVLKKVAGKPEEAMVSVMMLR 539 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE---- 526 A + + HFGL Y +TSPIR+Y DM+ HRL++ + T + Sbjct: 540 SMKQARYADQSLGHFGLAAPYYTHFTSPIRRYPDMMVHRLIRHYAENGTGEEARARYRDN 599 Query: 527 ---ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 I ++ R ERDV A ++ D G F A + + + G+ V L +N Sbjct: 600 LPNIAETTSDHERRGIDTERDVDSMKKAEYMADHVGE--TFEAVVDSVMKFGLFVEL-EN 656 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + E V Q V K + +++ + V + V + R + + Sbjct: 657 TVEGLVHISTMDDDYYEYVEKQ-LALVGRKTKRTFRIGQPVKVQLMRVDKDQREVDFK 713 >UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=2 Tax=Deltaproteobacteria RepID=Q1NL99_9DELT Length = 782 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 153/650 (23%), Positives = 265/650 (40%), Gaps = 45/650 (6%) Query: 26 VKATEKGFGFLEVDA-------QKSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPEE 77 + +GFGF + K F+PP M +HGD+I+ V+ ++ Sbjct: 142 LSMHPRGFGFAMLSESTDAARYHKDIFLPPDAMGSAVHGDKILVLVVKGRADKAEGRVLR 201 Query: 78 LVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPL 137 ++E +T VG + P+ L + R + + + G+ V E+ R Sbjct: 202 VLERGITSLVGIYVSGATSGLVTPEDERLPFKVVVRRPQ--SGGARNGEAVVVEISRFKE 259 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGLVRED 191 +G + + + + V + + H L + E+ ++ R D Sbjct: 260 QG--NPEGRIVEVLGDPAAAPVQIEIAIRSHQLPHRFAPALLAEVEAYSDKIEPQASRLD 317 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 L + VTIDS S D DDA+ + L L+L V+IAD + ++ GS LD A R + Sbjct: 318 LREIPHVTIDSESARDYDDAVAVEPLAKGGLRLYVSIADVSHYVQPGSALDDEAYARGTS 377 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 Y PG +PMLP LS+DLCSL ++ R ++ + G + F + I S+ +L Sbjct: 378 VYFPGRVVPMLPERLSNDLCSLVPDQDRYTMSAIIDFDGKGQ-RKSARFGKSLIRSRHRL 436 Query: 312 VYDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 Y +V LE+ + I + +A++ + R + + P+ +L + Sbjct: 437 TYTKVKAMLEDREPELCRRYADILPDLEQIAKLAANLNQVRMRRGSIGFEIPEADIVLDD 496 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 G + I R +A++++EE M+AAN A L + +Y +H DP A Sbjct: 497 DGHIDHIRRGERNMAHKLIEECMLAANEAVAEFLERQQAPTLYRIHEDPDPVKVTEFAEF 556 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFAEISTEPGPHFGLGL 489 GL + E F ++ P ++ S + R A + E HFGL Sbjct: 557 AGAMGLQLPKGEPG-PGWFGQVLALAAGTPREYIVSSLLLRSLQQARYAPENVGHFGLAA 615 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKGE----------------TATRPQDEITVQMAE 533 Y +TSPIR+Y D++ HR+L + E ++++ Sbjct: 616 THYTHFTSPIRRYPDLMVHRILARLTAAEGGGKKRQKQPVGAQGLAPAADLATAGLELSR 675 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R R+ AER+ + L A ++ DK G + F A + IS GM V LV+ + Sbjct: 676 RERVAVDAERNATERLVALYMADKVGEE--FDAVVSGISSFGMFVELVEIMISGAV---A 730 Query: 594 LHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 L + D+ + V ++++ + I V ++ V R + Sbjct: 731 LTDLTDDYYEVDDKSHRLVGRNSNRIFQIGNPIRVRLSSVDQRRRRLNFV 780 >UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZA7_DEIDV Length = 1123 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 152/668 (22%), Positives = 276/668 (41%), Gaps = 47/668 (7%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 + L G +A+ GFGF+ D + Y+IP Q + +GD ++ + Sbjct: 241 RRRTYGLPEAMSLVRGKFQASAAGFGFVVPDSGGEDYYIPAEQTLEAWNGDIVLVRMEGR 300 Query: 68 KER---------------ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC 112 + A +V+ ++ VG ++ + + PD + I Sbjct: 301 GDSGRGGGPRRGQRGDGNPRASVVRIVQRAYSKLVGTLEFHHGHPILKPDDHRARHRILV 360 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 GL + G V E+ G+ + ++ + + DD + + L Sbjct: 361 -LPEGLE-GLQAGARVVTELFWPENTGEDEVFGQVVRVLGEQDDPETETEAVIVKFGLRG 418 Query: 173 EAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 E P V E + + R DL + T+D +D DDA+ + P+ + Sbjct: 419 EFPGEVMAEAAAIPTEIPAEALVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVV 478 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD + ++ EG+ LD A RA + YLPG +PMLP LS+ +CSL + R + Sbjct: 479 GVHIADVSHYVREGTPLDDEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPYQDRLTMTA 538 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 + LSA+G I D ++ + I SKA+L YD+V + E T + + + LL +I Sbjct: 539 LVELSAEGDILD-VKIAPSVINSKARLTYDEVQAYSEATATLPDHARHLEGDLHLLLKIT 597 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + + R + + + +G G ++++ A ++E+ M+ AN A L Sbjct: 598 SKLRQKRLREGSLDFKMREVKVDVGPDGR-MELIPIREETARGMIEDLMLLANKVVAHYL 656 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGF 463 + ++ +H ++ + GL E T + + +++ P Sbjct: 657 LQREIPTLFRIHEEPTLQRFQEVSQAIGRLGLAFPGGE-PTPQAYQAVLKQVRGTPRESV 715 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 +++ + R A+ + E HFGL + Y +TSPIR+Y D++ HR+LK V+ GE Sbjct: 716 VNTLLLRSMQQAKYAGENLGHFGLAFDEYLHFTSPIRRYPDLMVHRVLKGVLGGELKAGN 775 Query: 524 QD---------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 ++ + ++R R AERD+ + A++ ++ FA + + Sbjct: 776 REVAKLQGRLPAMGDHTSDRERTAAEAERDLTKYYQAKWAQEHL--QETFAGNVSGVVAS 833 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIK--GETVYKVTDVIDVTIAEVR 632 G+ V L DNG + L D+ E+ + G +++ D + VTI+ V Sbjct: 834 GLYVAL-DNGVEGKLHISNL---DDDYYVYIEDAQMLRGRSGGRTFRLGDSVTVTISAVN 889 Query: 633 METRSIIA 640 R I Sbjct: 890 PMARMIDL 897 >UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria RepID=Q3IK27_PSEHT Length = 749 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 159/693 (22%), Positives = 277/693 (39%), Gaps = 58/693 (8%) Query: 1 MFQDNPLL-AQLK-QQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHG 57 M +D L+ +Q K Q+ Q GV+ GFGF+ A +K FI Q+ V G Sbjct: 62 MERDGQLMFSQHKGYQVIDQALLVSGVITLHADGFGFVNYSASEKDLFIAKNQLAHVFEG 121 Query: 58 DRIIAVIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 D + + + +R + + +++E T G ++ + +V D+ + + Sbjct: 122 DIVQILQEAASHKRSNNKLIKIIEHKTTHLAGILKRQGTDYVLVADNTKCPQKVQVAQCQ 181 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 N G + ++ ++P + ++T+ + + + L RH + Sbjct: 182 LANTSV--GQYVNTKITQYPT-FRHATQVQITEVLGLPHSAGMETKLALRRHGVADSWSK 238 Query: 177 GVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 + + + L R D FVTID +D DDA++ + +L+VAI Sbjct: 239 DLLAQASSLGNEVTEQDKLARVDYRLFPFVTIDGEDAKDFDDAVYCERTEQGNWRLLVAI 298 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD + ++ LD A+ RA + Y PG +PMLP LS+ LCSL +E R VL C MT+ Sbjct: 299 ADVSHYVKPNDVLDIEAQQRATSIYCPGQVVPMLPEALSNGLCSLNPHEDRLVLVCDMTI 358 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE-----QVRLLAQI 343 S DG + F I S A+L Y Q + + A ++ L + Sbjct: 359 SQDGQVTQ-ANFTEGLIHSHARLTYTQAHAVIAKPHSSSAKQLAELNADVSPLIKNLHYL 417 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 R + D + + L + ++ I R A+R++EE M+ AN+C A+ Sbjct: 418 YLDLSAARKLRGAIDFDTQELKLNLNKNQKITSIEPIERNDAHRMIEEFMLCANVCTAQF 477 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTG 462 L G++ VH G L ALL L + + T + KL + + Sbjct: 478 LDKHQIPGLFRVHAGPQQKKLQTLRALLAEKRLQLGGGDKPTPADYNKLLNNISQRSDAS 537 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET--- 519 + + + R QS AE S HFGL +AYA +TSPIR+Y D++ HR ++A I+ + Sbjct: 538 VIRTLLLRSQSQAEYSANNQGHFGLAYDAYAHFTSPIRRYADLVTHRAIRAKIQAKQQNG 597 Query: 520 ----------------------------ATRPQDEITVQMAERRRLNRMAERDVGDWLYA 551 + +++ + + R R+V L Sbjct: 598 LQRAISFLNVFANKASSVSKLAKKAYPYNLESIETLSLHCSAQSRKANDISREVESALKC 657 Query: 552 RFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQ 611 +++ G F A I +S G V L G +P + E V + Sbjct: 658 SYMEKYLGD--TFTATISGVSSAGFFVELDCTGVEGLVPVSSFS--QGEFVFNAAKQQ-W 712 Query: 612 IKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 + + + + ++VT+ + + R + + Sbjct: 713 SNSKQKFTIGERVNVTLKSIDLRQRKMSFSLAS 745 >UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVY9_9BACE Length = 710 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 158/658 (24%), Positives = 251/658 (38%), Gaps = 46/658 (6%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQK----SYFIPPPQMKKVMHGDRIIA----VIHSE 67 GV + T +GFGFL + K YFIPP GD++ A I E Sbjct: 4 KKTEEIITGVFQGTSRGFGFLVPEDGKSREDDYFIPPRATGGAWDGDKVQASPDPEIPWE 63 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + R +A + E G V+ L + PD L I G + G+ Sbjct: 64 EGRRTATVVRVTERANRFVTGTVEKLGRELWMRPDSDKLPGPIKI---SGKAKGVRIGEK 120 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 EM + L + + L + ++ E P V Sbjct: 121 IAVEMLGYGT-AKTPPMGALRETFGPAGNRESSTAAILYHYEIDPEFPPAVLDAAARAPR 179 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 D R DL +TID AS++D+DDA+ + + L V IAD + ++ E S Sbjct: 180 EVEKDALTGRTDLRNRIIITIDGASSKDLDDAVSLERDEQGRWVLGVHIADVSHYVQEKS 239 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD A R + Y IPMLP ELS+ +CSL R ++C MTL+ADG ED+ Sbjct: 240 PLDLEAWERGTSVYFADRVIPMLPVELSNGICSLNPGVDRLTISCFMTLAADGREEDHT- 298 Query: 300 FFAATIESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 + I S ++ Y+ + L D + I +R +A + + + R + Sbjct: 299 ICKSVIRSTERMTYEDCNKLLAGEDPDLEKRYNNILPMLRDMAVLARVLEKRRKLRGSLD 358 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 + + I E G+ +DI + + ++E M+AAN C AR L D+ +Y VH Sbjct: 359 LETSESYIICDEHGKPVDIKVRKQGESEALIESFMLAANECVARHLFDRHKPAVYRVHEK 418 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEI 477 A+ L +L G + L K+ + +P + + + R A Sbjct: 419 PSQDKAEGLKTMLAPFGYTFQEADSFAL---QKILEDTKGKPEAPIISTMVLRSLMKARY 475 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ------------- 524 + HFGL + Y +TSPIR+Y D++ HR+L V+ E Sbjct: 476 DVQNLGHFGLAAKYYCHFTSPIRRYPDLMVHRVLTQVLADEANPANVGKTMPWEKRMASV 535 Query: 525 -DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 Q ++R + AER++ A ++ G + +++ G+ V L + Sbjct: 536 AARAADQSSQREVAAQNAEREIEKLYMAEYMLAHVGE--TMVGTVSGVTKFGLFVMLP-S 592 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 G I A L RD + T+ V+ + V A + I Sbjct: 593 GVEGLISAEALP--RDHYHHDDQRMTLRGEHTGRVFSFGMPLTVVCAAADPGSGQITF 648 >UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W7V2_9FIRM Length = 700 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 158/663 (23%), Positives = 286/663 (43%), Gaps = 39/663 (5%) Query: 3 QDNPLLAQLKQQLH---SQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHG 57 +DN + K+++H ++ G + + G+GF D + K FI + + Sbjct: 47 KDNEIKISSKKKIHPLSTEDKSLIGQINLAQGGYGFFISDNKDFKDVFISANNLNTANNL 106 Query: 58 DRIIAVIHSEK---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 DR+ I K + + E++E + VG Q ++ D + I Sbjct: 107 DRVRIKIIKNKEFGKNAEGKVVEIIERNSNKIVGLYQKNKGFGFVISDSNNITSDIYVDE 166 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 + + K D + E+ +P KG S ++ + + D+ V + H L++ Sbjct: 167 KN--SKKAKSNDKVLVEIINYPKKG--SPEGKVIEVLGNKDEANVDLISIVKSHGLKENF 222 Query: 175 PDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 V E L + REDL L VTID ++D DDA+ + ++ L V Sbjct: 223 SKKVKKEAVFIEKDVDLSKVKNREDLRDLFTVTIDGRDSKDFDDAISIEK-DNEDYILYV 281 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ E S++DK A R + YL +PMLP ELS+ +CSL NE R L+ +M Sbjct: 282 HIADVSHYVKEKSEIDKEAYQRGNSTYLYNLVLPMLPEELSNGICSLNPNENRLSLSLKM 341 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 ++ G + D + + A I S +LVYD V+D+L+ + E + E++ L + + Sbjct: 342 KINDKGKVID-YKIYKALIRSNYRLVYDDVNDYLDYNKKVY-DDEVLLEKLDLFNDLYKI 399 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R + + + + + +G+VL+I R AN+++EE M+ +N A + Sbjct: 400 LKKKREKRGSIDFNFTESQIDVSNQGDVLNISLFERGSANKMIEEFMLVSNETIASLFAF 459 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 466 IY +H ++ +L T G ++ +E+ D L++ ++ Sbjct: 460 MDFPSIYRIHEKPKEEKVESFKNILNTLGYNIKGKELHPKDFQDILKQIKGKDDESLINM 519 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-------T 519 + R A+ + HFGL + Y +T+PIR+Y D+I HRL+K I + + Sbjct: 520 LMLRTMRKAKYTNYRDMHFGLATKYYTHFTAPIRRYPDLIVHRLVKDFIDNKLESINQTS 579 Query: 520 ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 + + ++ R + ERDV D +++K G RF I I+ G+ V Sbjct: 580 LEKKLSKFAEHLSITERNSEDCERDVEDLYKCKYMKKFIGE--RFEGIISSITDFGIFVE 637 Query: 580 LVDNGAIAFIPAPFLHAVRDEL--VCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 L +N F++ D + + I YK+ + + + V ++ R+ Sbjct: 638 L-ENTVEG----CFMYKFSDSHFEYIEDKLSCINIDKNKRYKIGQKVMIEVKNVDLDKRN 692 Query: 638 IIA 640 I Sbjct: 693 IDF 695 >UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJI5_ACIBL Length = 827 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 158/752 (21%), Positives = 262/752 (34%), Gaps = 132/752 (17%) Query: 18 QTPRAEGVVKATEKGFGFLEVDA-------QKSYFIPPPQMKKVMHGDRIIAVI--HSEK 68 G + G+GF+ A + +IPP + MHGD ++A I + Sbjct: 67 AQNLIAGKLSMHRDGYGFVMPGAAEVKSAIEGDIYIPPHAIGSAMHGDEVLAEIVATKKD 126 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC---------------- 112 R + T VG + P + I Sbjct: 127 GRAEGRILRTLNRAHTSVVGTFHYDKVN-FVRPIDEKITQDIVIPKGMEWPPDVEREEGE 185 Query: 113 ------RAARGLNHEFKEGDW-------AVAEMRRHPLKGDRSFYAELTQYITFGDDHFV 159 R + E K +W E+ P +S + + + + DD V Sbjct: 186 KRKKRSEQDRVIGTEAKRREWTDLDNLVVNVEITEWPSP-TQSPRGRVVEILGYEDDFGV 244 Query: 160 PWWVTLARHNLEKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDA 211 + + +H+L + P V +E E R D L VTID + D DDA Sbjct: 245 DTEIMIRKHHLPHQFPAAVLSEARSFSPEIPAKEIKHRRDYRELPIVTIDGETARDFDDA 304 Query: 212 LFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLC 271 + LP+ +L V IAD ++ + S +D A++R + Y P +PMLP ELS D+C Sbjct: 305 VLVSHLPNGNFELQVHIADVAHYVTDESDIDLEARLRGTSVYFPDRAVPMLPLELSTDIC 364 Query: 272 SLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE 331 SLR R VL+C M + G I E I S ++ Y V L+ + + Sbjct: 365 SLRPQVERLVLSCVMEIDHQGEIV-GYELNEGVIRSAERMTYTAVHGVLQGDTELRTRYA 423 Query: 332 AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEE 391 + + L+ + + R + D P+ E G + + R A+R++EE Sbjct: 424 PLVKNFELMRDLASILNKKRQKRGSIDFDLPEPVIEFDENGLMKGVTRSERNEAHRLIEE 483 Query: 392 AMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV-------- 443 M+AAN A L + +Y +H DP L + G + + Sbjct: 484 FMLAANESVATYLEARKIASLYRIHEKPDPKRVYEFETLAASFGYSLGVGSLPIERVHLK 543 Query: 444 -----------------------LTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEIST 479 +T + KL ++L+ +P L + R A S Sbjct: 544 ADKRARHGTGRRSEPIEIPKDVHITPRMYQKLTQKLEGKPEERILSYLMLRSLRQARYSE 603 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-------------- 525 + HF L +Y +TSPIR+Y D+I HR+LK V+K + Sbjct: 604 KNEGHFALAATSYTHFTSPIRRYPDLIVHRILKQVLKEQAEKNDHGVPVGVGGAVNEVDG 663 Query: 526 ----------------------------------EITVQMAERRRLNRMAERDVGDWLYA 551 +I + ++ R AER++ +W Sbjct: 664 HSPWSKRDGHERKGKQQHEDRPPLTGPIPEEQLRQIAEESSDAERRADDAERELLEWKKI 723 Query: 552 RFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQ 611 +F++D+ G + F IV +++ G+ V L D +P L + Sbjct: 724 KFMQDRVGEE--FTGLIVSVTKYGLFVELTDLFVEGLVPLLTLQGDHFN-YHENTKQLIG 780 Query: 612 IKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + Y + D + V + + R + V Sbjct: 781 ERSRKTYSLGDKVRVILDRIDRMQRKLQFAVV 812 >UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1D4N8_MYXXD Length = 1182 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 161/650 (24%), Positives = 263/650 (40%), Gaps = 38/650 (5%) Query: 17 SQTPRAEGVVKATEKGFGFLEV--DAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAE 74 + EG++ GFGF+ + F+PP + ++ + DR++ + R Sbjct: 164 EEDGLLEGILHVHRDGFGFVHPLSGEGDNVFLPPHEAQRALDNDRVVVAVSGRPPRLEGR 223 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE--M 132 +V+ VG K + P L I L +EGD + + Sbjct: 224 IVRVVQRRRELAVGTYVVKGRYAVVYPTDSSLPGPIRVP----LTQMAREGDLVKVQLGI 279 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD-------- 184 L DR + E+ + E P V E Sbjct: 280 GAQMLDPDRGLHGEVAGSLGKPGTPSAEVLGVAYSQGFSDEFPPEVMAEADRYAVTVTEE 339 Query: 185 --EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 G R DL A+ +TID D DDA+ + D +L+VAIAD T ++ EGS L+ Sbjct: 340 EVRGEHRRDLRAIPLITIDGEDARDFDDAVCVEDRADG-WRLVVAIADVTHYVWEGSALN 398 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A RA + YLP +PMLP LS+ +CSLR +E R + MT G + + + Sbjct: 399 AEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMTFDRRGH-RRSYDLYP 457 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 A + S A+ Y++V D L+ P A L + + + R + D P Sbjct: 458 AVMRSVARCTYNEVQDVLDGKD--VPHRNAHKPHFERLMSLARALMKMRKERGAIDFDLP 515 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 +++ +L E G + R+ ++R++EE M+AAN A +++ +Y H DP Sbjct: 516 EHKVVLDEDGLPARMDKRERKDSHRLIEECMLAANEAVATFFQNEGLPTVYRFHGEPDPE 575 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEP 481 AAL + +G + E+ ++ +L P L+ + R A ++ Sbjct: 576 KLATFAALAEAYGFKMRVEDGVSSKELDAFVSQLQGHPEQRALNQLLLRSMMQAVYTSSR 635 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQ--------DEITVQM 531 H+GL E Y +TSPIR+Y D++ HRLLKA KG ++ +++ Q Sbjct: 636 VGHYGLAAEHYLHFTSPIRRYPDLLVHRLLKAHWARKGRKPSQSMLEREEDQLEDMAAQC 695 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 +ER R ER+V + +KD+ G + FAA + I+ G V L + + A Sbjct: 696 SERERAAMQVEREVVSFYACLLMKDRVGEE--FAATVAAITDFGFFVELDEVHVEGLVKA 753 Query: 592 PFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 L + + V G V +V + V + V + + I Sbjct: 754 ETLGP--GAKLDKLTHSLVYANGRRV-RVGQKLRVRLTSVNVTAKKIDFE 800 >UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RFP5_9FIRM Length = 716 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 152/659 (23%), Positives = 268/659 (40%), Gaps = 35/659 (5%) Query: 5 NPLLAQLKQQLH---SQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRII 61 +LA+ K++ + Q G ++ KGFGF+E D + S+++ P +++ + D + Sbjct: 57 EHILARDKRERYFFSKQLGYVVGKLRVNPKGFGFVEYD-EGSFYVAPDKLRFALDQDEVY 115 Query: 62 AVIHSEKER-ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 A + + E E+++ + VG V+ + R +PD + P + + Sbjct: 116 ARSWTNNDGSREGEIVEVIKHNINNVVGVVKMREGRKYFLPDADIYNR--PFKITNYDDF 173 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 + + + + + + I + D + L ++ E P V Sbjct: 174 HLVHDSKVLVHIDSY----GSTLKCHIEKEIGYKYDPGIDILSILLEKDITPEFPREVME 229 Query: 181 EML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 E++ E R+DL L +TID D+DDA+ + +L V IAD + Sbjct: 230 EVMQIPEALQSKEYANRKDLRKLLTITIDGEDARDLDDAISIEKTEQG-YRLYVHIADVS 288 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ GS LDK A R + Y+ +PMLP LS+ +CSL R L C M ++ G Sbjct: 289 HYVTAGSALDKEAYARGTSVYVVDRVVPMLPHALSNGICSLNPKVDRCTLTCMMEINRKG 348 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 T+ D + + + I S ++ Y V+ LE Q + + + + + + R Sbjct: 349 TVID-YQIYPSVINSDERMTYTAVNAILEGDEQVQKQYPHLLKMCLDMKVLSGIIRKRRE 407 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + D + + ++ EKG+ +DIV R+ A RI+E+ MIAAN A +R + Sbjct: 408 KLGAIDFDTNEAKILVNEKGKPVDIVLRERKEAERIIEDFMIAANETVAAHVRWLEIPSM 467 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDA--EEVLTLDGFCKLRRELDAQPTGFLDSRIRR 470 + +H +P A + KT G + V L+ L + + R Sbjct: 468 FRIHEQPEPKRIREFARIAKTLGYTFTGGIQNVYPAQLQAMLKEAKGENNYSVLSTFMLR 527 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-----KGETATRPQ- 524 A HFGL L+ Y +TSPIR+Y D++ HR+L+ E R + Sbjct: 528 SMQKARYDRRCIGHFGLALKNYLHFTSPIRRYPDLVVHRMLRKYFFEGLQDSEKMARDEQ 587 Query: 525 --DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 ++ Q +ER R AER V D A +++ + D ++ I I+R G+ V L Sbjct: 588 WIEDAAYQASERERNAIDAERAVEDMKKAEYMEGRI--DRQYDGVISGITRFGLFVELA- 644 Query: 583 NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 N + + + + VY++ + V R I Sbjct: 645 NTVEGLVHISTIDDDY-YHYDDETKCLIGEHSANVYRMGQRVRVVCVAANRFKREIDFE 702 >UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMK5_9FIRM Length = 679 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 154/638 (24%), Positives = 264/638 (41%), Gaps = 29/638 (4%) Query: 22 AEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERE---SAEPEE 77 +GV K+ FGFL D + + +I ++ D + I + E Sbjct: 15 LQGVYKSYGPRFGFLITDEEHEDVYIADRDHLNAVNNDIVEVRIKKGETGRHNTEGEVLR 74 Query: 78 LVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPL 137 ++E FV + + +P + + RG E G + E+ R P Sbjct: 75 IIERAENTFVCTYEMTSFGGKAIPIDEKI--DMVIEIPRGEELEAVTGARVIVEVTRWP- 131 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGLVRED 191 + ++T+ I + D + + +A+H L + E + + ED Sbjct: 132 GARANAEGKVTELIGYKGDKGIDIDIIIAQHRLPHVFSKALMAEADALSKEMKQEKGVED 191 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 +L VTID +D+DDA++ + QL V IAD + ++ +GS +D A R + Sbjct: 192 FRSLPIVTIDGPDAKDLDDAVYCVKKENGHYQLGVHIADVSRYVRKGSLIDDEAYRRGTS 251 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 YL IPMLP +LS+DLCSL +E R ++C M ++ DG + + + + + Sbjct: 252 VYLADRVIPMLPFQLSNDLCSLNHDEDRYAMSCIMDVAPDGKVAAE-KITPSMVRVARRC 310 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK 371 Y +++ E TG + + +R L + R N + D P+Y+ IL E+ Sbjct: 311 NYPEINQAFE-TGVASDDLKPYLPMLRNLKACADILRKNRENRGALEFDFPEYKVILDEE 369 Query: 372 GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALL 431 G L I R A +++E+AMIAAN AR L +Y +H D +L ++ Sbjct: 370 GTPLRIEKRNRGDAEKMIEDAMIAANETVARFLEATGHTSVYRIHDHPDGNKLLSLKKMM 429 Query: 432 KTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEISTEPGPHFGLGLE 490 G+ + +L + + + + + R A STE HFG+ Sbjct: 430 AIFGMAEKLPKEPEPKDMQRLMESMKGKESEAVVQVMTLRSLPQACYSTENKGHFGIAST 489 Query: 491 AYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDEITVQMAERRRLNRMAER 543 Y +TSPIR+Y D++ HRL++ ++ + T +E + ER Sbjct: 490 CYTHFTSPIRRYPDLMVHRLIRQALRNRLNKSQLKKQTEFLLRAVEHCSETEQNAVETER 549 Query: 544 DVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVC 603 D D ++ G F A I ++R G+ V L DNG + + DE V Sbjct: 550 DTTDLKMTEYMIPFVGEP--FDAHITGLTRFGIFVGL-DNGVEGLVHIDSMDD--DEYVY 604 Query: 604 SQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 ++ TV ++G Y + + VT+ + E R + Sbjct: 605 QEDTMTVKGLRGGKKYTMGMPVRVTLVKADKEKRELDF 642 >UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J9E8_BLASP Length = 649 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 143/659 (21%), Positives = 277/659 (42%), Gaps = 45/659 (6%) Query: 10 QLKQQLH-----SQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAV 63 +L++++ S A G + T G+ F+ + K FIP + + + GD + Sbjct: 2 KLEKKIKKFAGLSNNSLAIGFINITSYGYAFVNIKGFPKDIFIPKKKTNRAIEGDLVQVR 61 Query: 64 IHSEKERE--SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHE 121 + K + E ++++ F+G ++ K+ ++ + + I Sbjct: 62 FKNRKSGKKIEGEVIKILKRKRKNFIGILKMKSQYGLVIVHNNTIHVDILIPINE--FKG 119 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 ++ + + E+ + P K ++ ++ + ++ + L+ + + E P V E Sbjct: 120 YQHNEKVLVEIVKWP-KNSKNPLGKIIKGFGVSGEYKTEIFSLLSEYGISYEFPKEVEKE 178 Query: 182 MLD-------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 + + +R D+ ++ TID +D+DDAL + L + ++ + IAD + + Sbjct: 179 AKEIVLKKNSDLNMRRDMRNINTFTIDPLDAKDIDDALSIRKLNSNTWEIGIHIADVSHY 238 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + EGS LDK A RA + Y G IPMLP+ LS+DLCSL + + + ++ G I Sbjct: 239 VKEGSFLDKEAYTRANSIYFVGKVIPMLPKILSNDLCSLHPEKDKLSFSSIFNMNNQGKI 298 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 + F I S + Y++V +E E + L + + R + Sbjct: 299 LKSW-FGKTIIRSNRRFTYEEVQKIIERKKG------DYHEDISTLLFFSKILTKNRLKN 351 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG----- 409 + ++ + +F L +K + E A+R++EE M+ AN + L Sbjct: 352 GAISIEKVEIKFHLDKKNNPTRLYLEKSNEAHRLIEEFMLLANRKISEFFSLNLDGKPSN 411 Query: 410 -FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSR 467 IY VH D L +++ G +D + + T L + + + +++ Sbjct: 412 RTYIYRVHDEPDFQKIFVLKKIIEPLGYFLDLKNIKT--SINHLLKSIQGKSEQNMIENL 469 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE----TATRP 523 I R S A+ ST+ H+GL Y +TSPIR+Y D+I HRLL + + + Sbjct: 470 ILRTMSKAKYSTKNIGHYGLSFIYYTHFTSPIRRYSDIIAHRLLNYYLTKKNNKLKSIEF 529 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 +E + +E+ RL AER+ +L +++K G + F I + + + L+ Sbjct: 530 YEEQSKHCSEKERLAIDAEREFLKYLQVKYIKKYLGKE--FEGIITGFTEWSVYIDLLVF 587 Query: 584 GAIAFIPAPFLHAVRDELVCSQEN--GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 I L ++++ N + K VY + D I V + + +E + I Sbjct: 588 QTEGMIR---LRDIQEDFYTLHSNNYSIIGRKKRRVYYLGDRIKVKLIDANIEKKQITL 643 >UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8V5_ACIC5 Length = 920 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 163/745 (21%), Positives = 272/745 (36%), Gaps = 123/745 (16%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFLEV---DAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 L Q HS+ G + G+GF+ DA FIPP ++ M GD+++ + + Sbjct: 61 LAQAAHSRDNLVAGRLDLHRDGYGFVRPAQRDAAGDIFIPPNEIGTAMQGDQVLVEVFPK 120 Query: 68 K---ERESAEPEELVEPFLTRFVGKVQ-------------------GKNDRLAIVPDHPL 105 + +R + ++ VGK + +VP Sbjct: 121 RPGEDRMAGRIVRVLTRRNPTVVGKFHYGNVGGNAGGGRRGGRERGPQYPGHYVVPFDER 180 Query: 106 LKDAIPCRAARGLNHEFK------------------EGDWAVAEMRRHPLKGDRSFYAEL 147 + + L EG E+ P R + Sbjct: 181 MTQPVIIPLDEPLPEAVVASPHRVLGEEVRQQFDDLEGLVVDVEITEWPTP-TRPARGRV 239 Query: 148 TQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEG-------LVREDLTALDFVTI 200 + + D V + + +H+L P+ V E + R D L VTI Sbjct: 240 IEVLGEEDAFGVDVEMMIRKHHLPHVFPENVLAEAREVAHLDGEVVAARRDFRDLPIVTI 299 Query: 201 DSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIP 260 D + D DDA+ + D +L V IAD ++ S LD A++R + Y P IP Sbjct: 300 DGETARDFDDAVLVREHGDGTWELQVHIADVAQYVTPESALDLEARLRGTSVYFPDRAIP 359 Query: 261 MLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL 320 MLP+ELS D+CSLR E R VL+C M + A G + E I S ++ Y QV L Sbjct: 360 MLPQELSTDICSLRPGEDRLVLSCLMQMDAHGQVT-GYEVTEGVIRSAQRMTYTQVQAIL 418 Query: 321 ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAE 380 + + + + + + ++ Q R + D P+ E G + + Sbjct: 419 DGDAETRDAFRPLVPEFERMYRLAQILNAKRERRGSIDFDLPEPVIEFDEFGAMKAVTRA 478 Query: 381 PRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA 440 R ANR++EE M++AN C A L + IY +H +P + + G + Sbjct: 479 ERLWANRLIEEFMLSANECVASWLENLAVPAIYRIHEKPEPRRVVEFEEIAASFGYSLGI 538 Query: 441 EEVL-----------------------------------TLDGFCKLRRELDAQPTG-FL 464 + T + KL +L +P + Sbjct: 539 GNLPVKRFHTRGERRDQRRDGRGGRRETRAHEVAEDIAVTPQMYQKLTAKLAGKPEERIV 598 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG------- 517 + R A S + HF L AY +TSPIR+Y D++ HR+ KA+++ Sbjct: 599 AYLMLRSLKQARYSEKNEGHFALAAPAYTHFTSPIRRYPDLMVHRIAKALLEAGVDGHGV 658 Query: 518 --------------------ETATRPQDEITV---QMAERRRLNRMAERDVGDWLYARFL 554 E A + E+ + ++ R AER++ +W +F+ Sbjct: 659 VAMGDARVHKVAPSDAGQAQEAAPFDEVELAAIAQETSDTERRAAEAERELVEWKKIKFM 718 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQI 612 +D+ G D F I+ ++ G+ V L D +P L A+ + +EN + Sbjct: 719 RDRVGED--FDGLILSATKYGLFVELEDLFIEGLVPIQSLGALDGDRYSYRENTREIIGD 776 Query: 613 KGETVYKVTDVIDVTIAEVR-METR 636 +++ + V + V ME R Sbjct: 777 GHGRTFRIGQRVRVLLDRVDAMEKR 801 >UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP Length = 736 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 145/658 (22%), Positives = 255/658 (38%), Gaps = 42/658 (6%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK-SYFIP-PPQMKKVMHGDRIIAVIHSEKE 69 + + EGV + + + + + D + + + + GDR+ + K Sbjct: 94 RYRYQVGGEMLEGVFE-SRRNYCVVVPDDESAEVIVSDRNNPEHALPGDRVRVALFPLKA 152 Query: 70 RES--AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 R + + E+++ + +VG+V + + L I R K D Sbjct: 153 RRTRTGQVVEVLQRRRSTYVGRVVVTKGFSYLHTEDRALDSRILL--PREALAGAKNNDK 210 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML---- 183 A+ + + + E+ + + D+ LA ++L P+ Sbjct: 211 AIVRIAHWGAR-EPEPTGEVVEVLGAAGDNNTEMHAILAEYDLPYSYPEEAEEAARQIPS 269 Query: 184 ----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 +E RED + +TID A +D DDAL + L +++ V IAD + ++ GS Sbjct: 270 EIPSEEMAKREDFREVFTLTIDPADAKDFDDALSWRKLEGGLVEVGVHIADVSYYVTPGS 329 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 +DK A RA + YL IPMLP L +DLCSLR NE R +C L+ ++ + Sbjct: 330 VIDKEAYDRATSIYLVDRTIPMLPERLCNDLCSLRPNEARLAFSCVFVLNEAAEVQ-SYR 388 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 IES + Y++ ++ AE + L + Q + R + Sbjct: 389 IGRTIIESNRRYAYEEAQQVIDTKEGDD------AEVILSLHSLAQLLRKRRFAQGAINF 442 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL-------GFGI 412 + +F+L +G +D++A P AN ++EE M+ AN A K I Sbjct: 443 SSQEVQFVLDAEGRPVDVMARPHGTANELIEEFMLLANRTVATEFGKKQRNSNGDAKTFI 502 Query: 413 YNVHMGFDPANADALAALLKTHGLHVD--AEEVLTLDGFCKLRRELDAQPTG-FLDSRIR 469 Y +H D + + A ++ G E + +P + + Sbjct: 503 YRIHDLPDGDKLNQMGAFIRRFGYQFKNATEASAISKNLNAVIEASQDKPEATLIQTMAV 562 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE--TATRPQDEI 527 R + AE STE H+GL E Y +TSPIR+Y D++ HRL+ + GE + Sbjct: 563 RTMARAEYSTENIGHYGLAFEYYTHFTSPIRRYPDLLVHRLVARYMAGEGSVPQAEYEAY 622 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +++ ++ AERD + ++ + G F I +++ G V L + Sbjct: 623 AQHCSDQEQVAAKAERDSVRYKQVEYMSTRLGK--VFDGVISNVAEWGFYVELTHSHCEG 680 Query: 588 FIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 +P L+ D+ E V + + + D + V E R I V Sbjct: 681 LVPMRLLN---DDFYDYDEKNFALVGRRYRRKFTLGDTVRVRAIHSDFERRQIDFELV 735 >UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QPD3_CHLP8 Length = 798 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 148/668 (22%), Positives = 257/668 (38%), Gaps = 64/668 (9%) Query: 21 RAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIH----------SEKE 69 +G + G+GF++V+ FI + + +HGD + ++ S + Sbjct: 144 TYQGKLTTHPNGYGFVDVEGFDDDIFIGADMLGQSLHGDEVEVLVTKVPETYVSKQSPHQ 203 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R +V LT VG +Q +N R + PD + I + K+G + Sbjct: 204 RCEGLIVNVVSRKLTTIVGTLQRENRRFLLKPDQRKILPEIHISVK--DAKKAKDGAKVL 261 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA-------PDGVATEM 182 A + + A + + + + V +++ + V E+ Sbjct: 262 AGDLEF--LKNGTIQARVIEILGQAGESQVEVSAIARGLGIDETFEQELLTFAEKVREEI 319 Query: 183 LDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDK-LQLIVAIADPTAWIAEGSK 240 DE L R D+ D TID +D DDAL + L + ++ V IAD + ++ E S Sbjct: 320 TDEDLKERLDIRDKDVFTIDPVDAKDFDDALSIEKLGNGGGYKVGVHIADVSHYVPENSA 379 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LDK A+ RA + YL IPMLP LS+ +CSL R + ++ G ++ EF Sbjct: 380 LDKEARKRATSVYLVDRVIPMLPSRLSEKVCSLNPGVDRMAFSVFFNITKKGEVK-KFEF 438 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 I SK + Y+ V ++ E+++ L + + R + + Sbjct: 439 HKTVIHSKRRFTYEDVQQIIDAGKG------DYVEELQALESLSKTIRAQRMESGGLEFE 492 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-------RDKLGFGIY 413 + RF LG GE ++++ + R ++R++EE M+ AN A L IY Sbjct: 493 TEEVRFKLGSNGEPVEVIKKERLDSHRLIEEFMLLANRTVAAYLTARYAENEKNPHPVIY 552 Query: 414 NVHMGFDPANADALAALLKTHGLHVDA------EEVLTLDGFCKLRRELDAQPTGFL-DS 466 VH LA ++ G + ++ +L +++ FL + Sbjct: 553 RVHGAPQMERVQVLANFVRKIGFDLKLDRKGKDSATVSSRALRELLQKVHGTNVEFLVNE 612 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-- 524 + R S A + HFGLG E Y +TSPIR+Y D++ HR+L R Sbjct: 613 LVLRSMSKAVYMSSNDGHFGLGFEHYTHFTSPIRRYPDLVIHRILFEYETTRKKRRKVTP 672 Query: 525 ----------DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 E+ ER ++ AER+ ++ G + I + Sbjct: 673 ERITEISATITEVCQITNEREKIATEAERESVKLKQVEYMSSHLGN--TYGGVITGATEY 730 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN--GTVQIKGETVYKVTDVIDVTIAEVR 632 G+ VR+ D + L +D+ E V + ++ + V + EV Sbjct: 731 GIYVRMTDFAIEGLVHMRNL---KDDYYEYDEATYSLVGRRKHRRLQIGQRLKVKVHEVD 787 Query: 633 METRSIIA 640 + R+I Sbjct: 788 LTRRTIDL 795 >UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 RepID=D2MM97_9FIRM Length = 759 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 157/646 (24%), Positives = 268/646 (41%), Gaps = 32/646 (4%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEP 75 SQ EG + G GF++++ + SY I P + M+GD ++ I + K A+ Sbjct: 64 QSQAKVIEGRLSVNRMGVGFVDIEDKDSYRIEAPDLATAMNGDLVL--IQALKILPFAKV 121 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 + E VG + K ++ + D LK+ R + + +G V + R+ Sbjct: 122 IAIKERAKDTVVGTIFTKGKKVYLGLDDERLKER-KVRLSYSKDFLPIDGLKVVGHITRY 180 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGL 187 + + I DD L H + E P+ V E+ + + Sbjct: 181 ----GDPLDVTVLKVIGHKDDPGTDIASILVDHEIPLEFPEEVLEELKSISQEVHPSQFI 236 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R+DL FVTID S++D DDA+ + ++ L V+IAD ++++ E + LD+ A+ Sbjct: 237 GRKDLRNQIFVTIDGDSSKDFDDAVSVEK-DENGYHLWVSIADVSSYVQENTALDQEAQQ 295 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R+F+ Y+ +PMLP ELS+ +CSL R L C M +S G I + + + + I S Sbjct: 296 RSFSTYVVDRVVPMLPHELSNGICSLNPQVDRLTLTCEMQISKQGEIV-SYDVYPSVICS 354 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 K ++ Y++V+ L E + +L R + + + P+ Sbjct: 355 KRRMTYNKVNQILIGNESVIQEYADMGNFFEVLLDCADAIRHQRVDKGAINFEHPETGID 414 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 L E+G+ + I + R +A I+E+ MI AN+ A+ L++ GIY VH Sbjct: 415 LDERGKPIHIYPKQRGVAEEIIEDCMIVANVSVAKYLKEYGIPGIYRVHEEPSAKRLKEY 474 Query: 428 AALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHF 485 L + G + V D L D L+ + R A HF Sbjct: 475 RHLAEILGKPFTLKTSNVQPKDVQQFLTSIQDENSAPILNMMMLRTMQKARYDIRDIGHF 534 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-------EITVQMAERRRLN 538 GL + Y +TSPIR+Y D+I HR+L + GE + +D E + + R Sbjct: 535 GLAEQDYLHFTSPIRRYPDLIVHRMLWKYMFGENQKKDKDWDNRRNREFAEHASIQERNC 594 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR 598 AE D A +++D G F I ++ G V+L +N + + Sbjct: 595 SDAEYACLDMKKAEYMQDHLGE--YFDGIITGVTHFGFFVQL-ENTVEGLVQTRSIPG-- 649 Query: 599 DELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 D + ++ V + VY+V + V + + ++ V Sbjct: 650 DYYLFHEDRSELVGKRNGVVYRVGQSVKVKVVAANKQKGNVDFELV 695 >UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea psychrophila RepID=Q6ALZ0_DESPS Length = 721 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 154/653 (23%), Positives = 274/653 (41%), Gaps = 31/653 (4%) Query: 12 KQQLHSQTPRA-EGVVKATEKGFGFL-----EVDAQ---KSYFIPPPQMKKVMHGDRIIA 62 K + S ++ A +GFGFL ++AQ + ++ M + +HGD+++A Sbjct: 78 KTYVVSNKELFCTAILDANPRGFGFLHNMESNIEAQLPLQDPYVSQYNMSQALHGDKVLA 137 Query: 63 VI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 I ++ R AE +++ L R G + + +VP+ L + + Sbjct: 138 YIFRTTQNGRSEAEIFHVIKRGLNRIAGVIAIDGSKGIVVPEDKRLPFVVQVTIPE--DM 195 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 + GD + +++ D+ L + D + + L + Sbjct: 196 SVRHGDGVIVTLKQTATP-DKVRQGMLLESFGSPDSVKSQIRFVVEKSVLPDKFSGETYA 254 Query: 181 EML-----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 E+ D R DL + FVTID + +D DDA+ + +L VAIAD + ++ Sbjct: 255 ELEQMGGEDHDPKRVDLRDIKFVTIDGDTAKDFDDAVCVEKR-GVNFRLYVAIADVSHFV 313 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 GS LD+ A R + Y PG IPMLP +LS++LCSL +E R L + + G ++ Sbjct: 314 KVGSALDRDAYERGTSVYFPGTVIPMLPEKLSNNLCSLVPDEDRLTLTAILDIDRAGKLQ 373 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 F + I S+ + Y +V + L+ G + +A ++ ++ + E R Sbjct: 374 KKS-FCRSLIRSQHRFTYTRVQEILDTPGSVSADEKAFLSMLQEAEKLARILKEKRAIRG 432 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + P+ +L +GEV ++ + +I+EE M++AN A ++ +Y + Sbjct: 433 ALGFTMPESIILLDSEGEVENVARSEAHFSQKIIEEFMLSANEAVAEFFTEQGCSALYRI 492 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSF 474 H D A G+ + + + F ++ E F+ ++ + R Sbjct: 493 HEKPDVDRVKEFATYAHNLGMQLPPPDN-SPAWFGRVIEESKGSEKEFVVNNLLLRSMKQ 551 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA---VIKGETATRPQDEITVQM 531 A+ S + HFGL Y +TSPIR+Y D++ HR L + ET R + + Sbjct: 552 AKYSADNVGHFGLAATDYTHFTSPIRRYPDLMVHRELCRLVGYLPAETKNRSAQQAGDFL 611 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 + R R+ AER++GD L F++ G F A I ++ G V L D A P Sbjct: 612 SGRERVATKAERELGDRLKCIFMERYIGE--TFKAIISGVTDTGFFVELKDFPISASAPI 669 Query: 592 PFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 L V D + + + + + D ++VT+ + +I PV Sbjct: 670 EEL--VEDMYLFDYRGHNLIGQNKGAFFSLGDSVEVTVQRIDRARNRVIVAPV 720 >UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=A7HAA8_ANADF Length = 910 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 164/645 (25%), Positives = 261/645 (40%), Gaps = 38/645 (5%) Query: 20 PRAEGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVI-HSEKERESAEPE 76 G +K G+GF+ F+PP + + + GD + I + R + Sbjct: 95 NEVVGTLKKHRDGYGFVARIDRKGDDVFVPPGEAAQALDGDLVRVEIVPARGGRTAGRLV 154 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 E++E +G + R +VP L +A+P ++GD + Sbjct: 155 EVIERRRRLLIGTYHARGARSFVVPADEELGEAVPVPE----TAAAQDGDVVKVAL---- 206 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLV 188 G + + I + V P+ V E ++ Sbjct: 207 EPGTARLQGAVVEAIGRPGEPRVEVLKVAYAKGFADVFPEPVRAEAEATPDRVRPEDRQG 266 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPD--DKLQLIVAIADPTAWIAEGSKLDKAAK 246 R DLTAL VTID D DDA+ + L +L+VAIAD ++ G+ LD A Sbjct: 267 RRDLTALPLVTIDGEDARDFDDAVHVERLEGRKGLYRLVVAIADVAHYVRPGAALDAEAG 326 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 R + Y P +PMLP LS+ +CSL + R + + + G + E + + Sbjct: 327 RRGTSVYFPMQVLPMLPERLSNGICSLNPDVDRLCMVADLVVDEHGETR-SAEVYEGVMR 385 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 S A+ Y +V++ + P + E+ L+A++ ++ R + D P+ + Sbjct: 386 SAARCTYTEVANVVAGQS--VPGRDRFRERFLLMAELQEKLTAMRGRRGALDFDLPEAKI 443 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 +LGE GEV+ I PR A+RIVEE M+AAN AR + IY +H D A Sbjct: 444 VLGEGGEVVAIEKRPRNRAHRIVEEFMLAANEAVARWFGSRELPTIYRIHDVPDEEKLQA 503 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAEISTEPGPHF 485 L ++HG V EV L L+ + R A +TE H+ Sbjct: 504 FLDLAESHGFEVP--EVPGPRALNALLGRFQGHAQQRALNQLLLRAMMQAVYATENIGHY 561 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLK---AVIKGETATRP----QDEITVQMAERRRLN 538 GL + Y +TSPIR+Y D++ HRLLK A +G+ P E+ +ER R Sbjct: 562 GLAAQHYLHFTSPIRRYPDLVVHRLLKEEWARRQGQPVREPSPAALAEMAAVSSERERAA 621 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR 598 AERD+ + A F+KDK G R+ I + G+ V L + L Sbjct: 622 MEAERDIAAFYAALFMKDKVGE--RYEGVISAVVEFGLFVELKRWFVEGLVRLEDLGGAP 679 Query: 599 DELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + ++ + V ++V D + V + R I + V Sbjct: 680 E--LDTELHALVDRTTGRAFRVGDEVTVDVVSASPIRRRIELKLV 722 >UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=Q04E22_OENOB Length = 726 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 145/668 (21%), Positives = 257/668 (38%), Gaps = 50/668 (7%) Query: 17 SQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIA-VIHSEKERE--S 72 + G A KGFGF++ D Q FI M D ++A +IH K+ Sbjct: 7 ASENFINGTFVANPKGFGFVKTDEGQDDLFIGHSNTNLAMQSDEVLASIIHPGKDGRVPE 66 Query: 73 AEPEELVEPFLTRFVGKVQG---------------KNDRLAIVPDHPLLKDAIPCRAARG 117 + E+++ VG + + I + L++ +G Sbjct: 67 GKIEKILSHANQEVVGIFRSGVNENDLPNRSNLNPNDYIGTITFNDEKLQEYKYLVDKKG 126 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSF-YAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 L ++ D A + P + +T I D V + + P+ Sbjct: 127 LQP--QDRDSVTATTSQFPTSDRPNLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSNYPE 184 Query: 177 GVATEMLD----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 A + + E R D +TID A T+D+DDA+ LP+ L V Sbjct: 185 DAAQQAKNIPQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGV 244 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ + LD A R + YL IPMLP E+S+ + SL NE R ++C M Sbjct: 245 HIADVSNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCEM 304 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 ++ +G + + + + I S A++ YD ++ L+ + ++E + + + + Sbjct: 305 EINQEGQVVKH-KIQPSIIRSHARMTYDSINKILDGDQAETAKYADLSEMIHQMGDLHKI 363 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + + + I+ KG D++ R I R++E M+AAN A Sbjct: 364 LAAMRKKRGAIEFETDEAEIIVDAKGHPTDVLVRDRGIGERMIESFMLAANETVAEHFDH 423 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDAQPTGFL- 464 +Y VH + ++ G + A + L F + P + Sbjct: 424 LHVPFLYRVHEVPEGDKVVNFFEFMRAIGHPIKADPKNLRPKDFQAALDAVAGLPEEMMI 483 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + + R A S +P HFG+ + Y +TSPIR+Y D++ HRL+K K T Sbjct: 484 QTMMLRATKQAHYSPQPIGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGTGPSST 543 Query: 525 D-------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 D +I + +ER R AER D +A +++D G + + + G+ Sbjct: 544 DAVRGKLPQIGIDTSERERRAVDAERATNDMKFAEYMEDHIGD--IYDGVVNSALKFGLF 601 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMET 635 + L N + ++D++ E + ++ + + V + ET Sbjct: 602 ISLP-NTIEGL---AHISTMKDDIYQYDETRQALIGRTKHRIFAIGQKVKVRVINANKET 657 Query: 636 RSIIARPV 643 R I + Sbjct: 658 RKIDFELI 665 >UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7B5_HAHCH Length = 657 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 197/638 (30%), Positives = 297/638 (46%), Gaps = 20/638 (3%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVI-HS 66 L Q KQ L R EG VK + FGF +D + F+ P +M+KV GDRI+ + Sbjct: 10 LKQFKQDLRIANNRFEGTVKGSPGRFGFAVLDDGRECFLNPDEMQKVFPGDRILVEVSQD 69 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 +K R+ A+ + + L FVG+ + + PD + I + + D Sbjct: 70 DKGRDVAKVVQHMRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPKK--RQQAHVND 127 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD-- 184 + + +HP + AE+ + I + LA++NL+ + L Sbjct: 128 LVLCRVLQHPFPEGKP-QAEVVKIIGKPGASGLEVNYMLAKYNLQAHNRASINEAELQKQ 186 Query: 185 ---EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 E R+DL FVTID+AST+DMDDALFA A P+ +L+ AIADP+ I EG + Sbjct: 187 VAAELEKRKDLRETPFVTIDAASTQDMDDALFATARPEGGWELLAAIADPSTLIPEGGDI 246 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK A+ + Y +PMLP +L++ CSL++ E R L C M + ADG I + Sbjct: 247 DKYAQRLGSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQIDADGAI-SSYSIE 305 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 A I A L Y++V+ L + +A ++ L ++ R HALV +DR Sbjct: 306 EAAIRCAANLTYEEVATALASGDASAHAYDAT---LQALNEVKAALASHRRAHALVNEDR 362 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 PDY+ L E G+V +I + +A+ IVEEAM+AAN CAA L+ +Y H GF P Sbjct: 363 PDYQLELDENGKVKNIHRKINSVAHSIVEEAMVAANRCAADFLKQNTERSLYTSHSGFRP 422 Query: 422 ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-RFQSFAEISTE 480 D + ++ D ++ T +GF K LDA P I R + +S + Sbjct: 423 ERLDQIKQIVSEQISDYDCSDLHTWEGFKKFMDFLDANPPEVPVKAIANRLLARGALSDQ 482 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM 540 P PHFG+GL Y T+TSPIRKY D+ HR +K+V+K + + +Q+ E R R Sbjct: 483 PCPHFGMGLPHYTTFTSPIRKYVDLSIHRQIKSVLKNQKPHTLNAKAILQLQESLRAGRS 542 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 A + WL + + G F + + G + RL +NG + L E Sbjct: 543 AVNESETWLKCEYAQTLIGK--TFDGVVQHTTGSGFQARLDENGIEGMVNLGAL----QE 596 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 +++ + VTI+ V ME + I Sbjct: 597 KFRFDGTYFQHTGEHRQFRLEQPVKVTISAVDMEKKLI 634 >UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7NCL8_LEPBD Length = 761 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 164/662 (24%), Positives = 280/662 (42%), Gaps = 43/662 (6%) Query: 11 LKQQLHSQTPRAEGVVKA----TEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS 66 LK+ P EG VK + FGFL+++ + S FIP + M+GD ++ I Sbjct: 99 LKRNGRYTLPEKEGFVKGEISISSGNFGFLDINGEASVFIPGAYLNTAMNGDTVLVRILK 158 Query: 67 EK----ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 + ++ E ++++ VG + + P + IP + RG Sbjct: 159 QSSDGTKKREGEVYKVIKRNRNVIVGVFENNLSFGFVRPRNSPKDIYIPKKLIRG----A 214 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 K GD ++ + +R + + D L +E++ P+ V E+ Sbjct: 215 KTGDLVAVKVDFWGDE-ERKPEGAIVSILGSPKDTEALISSLLLNEGIEEKFPNEVLQEL 273 Query: 183 -------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 DE R+DL LD +TID + +D+DDA++ + D +L V+IAD + ++ Sbjct: 274 DKIDEDISDELKNRKDLRHLDIITIDGSDAKDLDDAVYVEKTEDG-YKLFVSIADVSYYV 332 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 E ++LD A R + YL IPMLPR+LS++LCSL NE + M L G + Sbjct: 333 RENTELDMDALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDKRGKVV 392 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQ------PESEAIAEQVRLLAQICQRRGE 349 N +F+ + I+SK ++ Y+ V+ LE + + + I E ++ + ++ + Sbjct: 393 KN-DFYKSVIKSKYRMTYENVNTILEKNEESEEYKVLYDKYRKIDEMLKNMLELSKIIRN 451 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 + + + P+ + +L E V DIV R A RI+E+ M+ AN A L + Sbjct: 452 NKKRRGSIDFELPEIKVVLDENKAVKDIVLRSRGEAERIIEDFMVIANETVAEKLFWEEI 511 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRI 468 IY VH D A AL L G + E + F + P G+L I Sbjct: 512 PAIYRVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERTTGLPEGYLIHKLI 571 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ---- 524 R A + + HFGL + Y +TSPIR+Y D+I HR+L I+ + + Sbjct: 572 LRAMQRARYANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLGRSIEKFMNEKEKAKYG 631 Query: 525 ---DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 + I ++ R+ E D +++DK G + A + +++ + + L Sbjct: 632 ANFEAIASSISRTERVADKLEEDSVKIKLIEYMQDKIG--QVYIARLSGMNKNKIFMEL- 688 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 +N + RD + +EN V + Y + + V+I I Sbjct: 689 ENHIEV---VYNVTTARDNFIYDEENFKIVDKRNNESYTMGSTMKVSIVSASYAKMEIEV 745 Query: 641 RP 642 P Sbjct: 746 IP 747 >UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=A1AWH7_RUTMC Length = 705 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 154/656 (23%), Positives = 284/656 (43%), Gaps = 29/656 (4%) Query: 3 QDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRII 61 Q N + + + G V A KGFGF+ +D K + QM+ V HGDR+ Sbjct: 63 QLNCDQRGVYHKFSEKNWVMTGTVIANPKGFGFITLDKGGKDLRLSSKQMQLVFHGDRVK 122 Query: 62 AVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHE 121 + ++ R + ++++ VG++ + D +V D +K I +N E Sbjct: 123 VRLLNQ--RGDTQIIKVIKSI-ETVVGRLHLEKDGAYVVVDDKRIKHNISI---SKINRE 176 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 + + ++ + P + E+ Q + D V L R+ + + + Sbjct: 177 HLDEQIVIVKITKSPTLKSLA-VGEIVQILGSYMDEGVETDSALYRNGIPVDFSPEALIQ 235 Query: 182 MLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + R D+T + VTID + D DDA++A+ +L+V+IAD + Sbjct: 236 TDKLPSIVTDSDKKGRIDITKMKLVTIDDEDSRDFDDAVYAQTTSKG-WKLVVSIADVSH 294 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ EG LDK A R + Y P +PMLP LS+ LCS+ + R + C M + G Sbjct: 295 YVKEGLYLDKDATDRGNSVYFPHHVVPMLPEVLSNGLCSINPDVERLCMTCEMNIDTHGN 354 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRH 352 + D +F+ A + S A+L Y +VS LE+ D + ++ + + L + + + Sbjct: 355 LLD-YKFYPAVMLSHARLTYTKVSQILEHHDVDLTQQYASVMDNLNTLYDLYKALKYAKI 413 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 ++ DR + + + + G++ +I+A R A++++EE M+ AN +A+ L + Sbjct: 414 KRGVMDFDRIESQILFNDNGKIDNIIARSRNDAHKLIEECMLMANQASAKFLNHHNEDFL 473 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRF 471 Y +H + L GL ++ F K+ + + + + R Sbjct: 474 YRIHPKPTVEKVEVTRQFLTAIGLTLEGGTQPDSKDFAKVLASAKGRDDETIIKTVVLRT 533 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEITV 529 A + HFGL E Y +TSPIR+Y D++ HR +K V+ K ++ EI Sbjct: 534 MKQAVYTPVNEGHFGLAFENYTHFTSPIRRYPDLLVHRAIKRVLDKKSRKPSKKMLEIGA 593 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 ++ R A RDV WL +++DK G F I ++ G+ + L D I Sbjct: 594 HLSMTERRADDASRDVEQWLKCEYMRDKIGN--TFNGVISGVASFGIFIELTDVFVEGMI 651 Query: 590 PAPFLHAVRDELVCSQE--NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + ++D+ + + + +Y++ + I + +A V ++ R + P Sbjct: 652 ---AIRDMKDDYYIFDDIHHQLKGERTGKIYQLGNTIKIQVASVNLDDRQMAFVPT 704 >UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID=A1WUS9_HALHL Length = 842 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 168/667 (25%), Positives = 277/667 (41%), Gaps = 32/667 (4%) Query: 1 MFQDNPLLAQLKQQ--LHSQTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHG 57 M +D L+ ++ + + G V G GFL D + P QM+ ++HG Sbjct: 71 MERDGQLVRNRRRGYLVVDHSELVRGRVMGRPDGSGFLLPDGTGDRLALSPRQMRCLLHG 130 Query: 58 DRIIAVIHSEK--ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR +A I E E++E + G+ ++ +VP++ L+ + A Sbjct: 131 DRAVARITGRDEHGTPQGELVEILERGNRQITGRFFEEHGVGFLVPENKRLQQDVLL--A 188 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 ++G+ AVAE+ P + R + Q + V H + + P Sbjct: 189 PDGRGGAEDGELAVAEILAQPNE-RRQPIGRIIQVLGRTIHVGEEDMVAARIHGIPMDWP 247 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V E+ + R DL L VTID A +D DDAL+ + +L+VA Sbjct: 248 AEVEKEVAAFGEEVPEADKEGRTDLRRLPLVTIDGADAKDFDDALYCEPTAKG-WRLVVA 306 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ G+ LD+ A++R + Y P +PMLP LS+ LCSL R + C M Sbjct: 307 IADVSHYVRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNGLCSLNPKVDRLAMVCDML 366 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL---LAQIC 344 L +G + + F+ A I+S A+L Y+Q + + + GD + S E VR L + Sbjct: 367 LQGNGKVLRS-RFYRAVIQSAARLTYEQAAAAVVD-GDRKVRSAIGDEVVRHLENLHGLY 424 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + + R + D + ++G V+ + R +++VEE MIAAN+C A+ L Sbjct: 425 KTLRKARDERGAIDFDTTETEMRFDDEGRVVAVEPTERNDFHKVVEECMIAANVCTAKFL 484 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GF 463 +Y VH + L L GL + + T + ++ + +P Sbjct: 485 LKNKVPSLYRVHERPGEQKLEQLKEFLAQAGLELGGGDEPTGKDYGRIMEQARERPDRHL 544 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---- 519 +++ + R AE + HFGL LEAY +TSPIR+Y D++ HR + VI G Sbjct: 545 IETVLLRSMQAAEYRPDNAGHFGLALEAYTHFTSPIRRYPDLVIHRGIGHVIDGHRGRSF 604 Query: 520 --ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 + + R A RD L +L D G + F I ++ G+ Sbjct: 605 PMTHNDLVTLGEHCSMAERRADEATRDAEMTLKCEYLSDHLGDE--FTGVIAAVTSFGLF 662 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 V L + L + V + Y+++D + V + V + R Sbjct: 663 VSLEGVYVDGLVHITNLESDFFHFDSVGHR-LVGDRTGKEYRLSDRVRVRVGRVDKDDRK 721 Query: 638 IIARPVA 644 I VA Sbjct: 722 IDLEVVA 728 >UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQN7_BDEBA Length = 858 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 152/645 (23%), Positives = 270/645 (41%), Gaps = 31/645 (4%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKE--RES 72 + G +K GFGF D ++ +IP M+ +M D++ + EK R Sbjct: 2 QKKKILTGTIKRHPDGFGFFIPDDKEHPDVYIPRHSMEGIMTNDKVAVEVTPEKGGERFR 61 Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDH-PLLKDAIPCRAARGLNHEFKEGDWAVAE 131 E + ++ VG+ N+R ++ D + + + + K+ + AE Sbjct: 62 GELDHVLSRGTKTVVGRFFKMNERTGLIRDEGKGWGQDLKIKIE--DSMQAKDKELVAAE 119 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML-------- 183 + +P G + F ++ + I D + +++ E E Sbjct: 120 ITSYPDDG-KPFTGKVIEIIGDAMDPLTDLKRVIRANHIPLEFSKATLEEAEHFSEVPDE 178 Query: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 + R DL +TID A+ +D DDA++ + L ++ L VAIAD + ++ G+ +DK Sbjct: 179 KDFKGRRDLRDKALITIDGATAKDFDDAVYVETL-NEGFLLYVAIADVSHYVKIGTAIDK 237 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A R + Y+P F +PMLP LS+ LCSL + R L M G + + +F+ A Sbjct: 238 DAYERGTSVYMPNFVVPMLPEVLSNGLCSLNPHVPRLCLVAEMLFDFTGELVKS-DFYEA 296 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 +ESKA++ Y + + ++ G+ + + + + + L+ + + R + + P+ Sbjct: 297 VMESKARVTYGEAQEIID--GNEVEKHKHVKDHILRLSDLAKILMAKRFKEGSLDLEIPE 354 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 ++ G +DI R A+R++EE M+AAN+ A+ L + +Y +H + Sbjct: 355 TELVIDGAGVPVDIQRSERLFAHRLIEEMMLAANVAVAKFLSSREIPALYRIHEPPNEMA 414 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPG 482 L L G K E + +P L+ R S A+ + Sbjct: 415 IRTLEKYLANFGGKTKLGSGKLQKRLTKALEEFEGRPEAQILNILTLRSMSQAKYNMNNV 474 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEIT---VQMAERRRL 537 HFGLG E Y +TSPIR+Y D+I HRLLK + +D++ ++ + Sbjct: 475 GHFGLGFEFYTHFTSPIRRYPDLIVHRLLKTQVMPNSRYRLMSEDDLATAGTILSAAEQR 534 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 + AER V ARF++ G + F I +++ G+ V L + + L Sbjct: 535 STKAERQVQSIKKARFMQKFIGQE--FDGMISSVAKFGVFVLLREYDIDGLVRLDDLGG- 591 Query: 598 RDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 D +EN V + Y + D I + + E I Sbjct: 592 -DRFEFDEENLRLVAKRSGFAYSIGDSIRIQVVAADPEQGQINFA 635 >UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2V6_DESAC Length = 722 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 157/652 (24%), Positives = 272/652 (41%), Gaps = 26/652 (3%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAV--I 64 + + + +++ +K G G L + D ++ ++ M GD ++A+ Sbjct: 55 MRRGRYRVNRPLKLVCARLKHQSSGHGVLTDCDDGHELYVATFRLGGAMDGDEVMALELP 114 Query: 65 HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 S R E+V+ +G + + + +V R + Sbjct: 115 ESRGRRPEGWIVEVVKRSRETLLGVCEKNSRQGGVV-FRSEQGGLTFDVDDRSRDVSLLV 173 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV------ 178 G V + R+P + + + V T+ R + V Sbjct: 174 GQVVVLRIDRYPAMHENGL-GHIVDVLGHAGSPEVDILSTVHRLGIPNRFSAAVEQAASA 232 Query: 179 -ATEMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 A E+ E + R DL +L FVTID A D DDA+ D +L VAIAD ++ Sbjct: 233 IAAEVPPEVVAARADLCSLPFVTIDGADARDFDDAVCLARSEDGHWRLHVAIADVGYYVE 292 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 EGS LD A+ R + Y P +PMLP+ LS+ +CSL+ + R V+ +T G Sbjct: 293 EGSALDLEARERGTSVYFPSRCLPMLPQALSNGICSLQPEKERLVVVAEITFDDLGR-RL 351 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 N E + ATI S+ +L+Y+QV L+ P SE + E + + + Q R + Sbjct: 352 NFEAYRATIRSRQRLIYEQVQQVLDGQVPEIPVSEPLTEMLHQMQHLAQSLRHRRLHRGA 411 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + D P+ I ++G ++ I R ++R++EE M+ AN A + + G++ +H Sbjct: 412 IDFDLPEANVIFDDEGRIVRIGRRSRLDSHRLIEEFMLCANEAVAEFILSRRETGMFRIH 471 Query: 417 MGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQSF 474 D + + L T L + E+ ++ +L E++ F ++ + R Sbjct: 472 ESPDIRSMQSFQQFLATLNLGITLDEDGISARELRRLLHEVEGTSLEFSVNRILLRSMKQ 531 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE---TATRPQDEITVQM 531 A E HFGL +AY +TSPIR+Y D++ HRLL ++ G A P + Sbjct: 532 ARYDAENSGHFGLASDAYCHFTSPIRRYPDLLVHRLLLQILDGRADWEADEPLPRLADAA 591 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 R AERD+ D +F++DK GT R++ I ++ G V L + + Sbjct: 592 TAAERRAMEAERDIVDLRKCQFMEDKIGT--RYSGYITSVNAFGFFVELDEFFVEGLVHI 649 Query: 592 PFLHAVRDELVCSQENGTVQIKG--ETVYKVTDVIDVTIAEVRMETRSIIAR 641 L D+ E + + ++V D ++V + +++ R I Sbjct: 650 RTLS---DDYYVFDEERLILVGQARRKTFQVGDTVEVEVWQIKSAAREIDFV 698 >UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6K5_9BACT Length = 730 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 159/671 (23%), Positives = 270/671 (40%), Gaps = 40/671 (5%) Query: 2 FQDNPLLAQLKQQLHSQT-PRAEGVVKATEKGFGFLEVD---AQKSYFIPPPQMKKVMHG 57 FQ + + KQ + + G + +GFGF+ K F+ M MHG Sbjct: 47 FQGEIVKIKRKQYANPKKVNLLVGTMDCNSRGFGFVVPAKKGEGKDIFVNEENMNSAMHG 106 Query: 58 DRIIAVIHSEKE---------RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD 108 D ++ + ++ S + +++ VG + L +VPD+ L Sbjct: 107 DIVVVRLPDLEQIPKRGKKKGGGSGQIVNVLKRANPFIVGTFKKSKRLLYVVPDNARLFR 166 Query: 109 AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARH 168 + G + GD V ++ + P + + E+T+ + D V + + Sbjct: 167 DVYVT--EGDAKDATPGDKVVVKIVQWPSR-HLNPEGEITEILGKEGDPKVDLHSIIYQF 223 Query: 169 NLEKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220 L + V+ E +E R DL +TID +D DDAL + Sbjct: 224 KLPQAFHKKVSNEAEKISQEIPQEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEKDERG 283 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 QL V IAD + ++ + S +DK A++R + YLPG IPMLP LS++LCSLR E R Sbjct: 284 NWQLGVHIADVSYYVKQDSAIDKEARLRGTSVYLPGKVIPMLPEALSNNLCSLREGEDRL 343 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL 340 + +T+ +G I + + I +L Y Q + + N E + + + L Sbjct: 344 TKSVLVTIDPEGNILKST-VKHSVINVTKRLTYKQATAIINNESAGNI-PEMVKDVLVEL 401 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 AQ+ Q + + N + D P+ L E+G + + E R +++R+VEE M+ AN Sbjct: 402 AQLAQILFKNKMNRGAIELDLPEVSLKLDEEGNIEKVEKEERDVSHRLVEECMLLANEMV 461 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP 460 A + I VH D + A ++ GL + + E+ +P Sbjct: 462 ATFMHKNKLPLISRVHPEPDEEDMLEFADFVR--GLENTRVDPFKIHQLQAFLAEIRGKP 519 Query: 461 TG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 ++ + + A S HF L LE YA +TSPIR+Y D+I HR L GE Sbjct: 520 EAHMVNLVLLKSMKQAVYSATESGHFALALENYAHFTSPIRRYPDLIIHRTLDQHFSGEL 579 Query: 520 A--------TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 E + R AER++ RF +++ G + F I + Sbjct: 580 RSPVIQKMWENCLPEWAGHCSVTERRAEEAEREITKLKLLRFFENRVGDN--FEGVITGV 637 Query: 572 SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 G V+L + + L + + V + + +++V DV+ V I ++ Sbjct: 638 QEYGFFVQLSEYLLEGLVHIRTLEDDI-YQISKKHMALVGTRRKKMFRVGDVVKVKIYKI 696 Query: 632 RMETRSIIARP 642 + R + P Sbjct: 697 DLLKREVDFIP 707 >UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWX7_9BACL Length = 708 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 143/656 (21%), Positives = 269/656 (41%), Gaps = 31/656 (4%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVI-- 64 L K + EGV++ +KGF F+ D +IP + M GD ++ + Sbjct: 51 LPSEKFLYVKEALEIEGVIRLHQKGFAFVYSADLGIEVYIPKGFTQSAMTGDVVLVKVDS 110 Query: 65 -HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 + + ++++E VG + + D + I A+ N Sbjct: 111 VYKDDRNLEGIVQKVLERNTKYTVGTLTNAKFFSFVKSDDKNIVKYIKITNAKNFN--LV 168 Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV----- 178 +G + E+ + + + I DD V + +HN+ E P V Sbjct: 169 DGSKVLVEITDYSKVSFEDHKGIIIKSIGHKDDPGVDILSVIYKHNIPNEFPQEVLEQTE 228 Query: 179 --ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + E+ E R D T VTID +D+DDA+ +L V IAD + ++ Sbjct: 229 KISDEIKLEDKYR-DCTNEMVVTIDGDDAKDLDDAISVIKTKKG-YRLKVFIADVSRYVT 286 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S LDK A R + YL +PMLPR+LS+++CSL +R + C + + G + Sbjct: 287 EDSPLDKEAANRGCSVYLADRVVPMLPRKLSNNICSLNPQVLRYTICCDIDFNTKG-FPE 345 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 + + + A I+SK +L Y +V++ + + E + ++ ++ + R Sbjct: 346 SYDIYPAVIKSKGRLTYKKVNEVYADNKETIEEYKEYVPMLKTALELSTKIRANRETRGA 405 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + D+P+ + ++ E GEVLDIV R I+ +++E+ M++AN IY +H Sbjct: 406 IDFDKPESKVVVDENGEVLDIVLRERGISEKLIEDFMLSANEVIGEHFYWMQVPFIYRIH 465 Query: 417 MGFDPANADALAALLKTHGLHVDA--EEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSF 474 + + G EE+ LR+ L + + R + Sbjct: 466 EEPKMEKLRQFFDIAASLGYRTKGKIEEIEPYMLANMLRKFKGEVVETMLSTILLRTMNQ 525 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGETATRPQD-------E 526 A S HF L + Y +TSPIR+Y D++ HR+++ + G+ + + D + Sbjct: 526 ARYSINNIGHFALATKYYTHFTSPIRRYPDLLVHRMIRTYLFNGDVSDQTIDNFISRLPD 585 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + +E + ER+V ++ + F + ++ G+ + L + Sbjct: 586 LAESSSEYEKRAVDCEREVDRMKKCEYMLKY--QEQTFRGIVSSVTNFGVFITLERSNIE 643 Query: 587 AFIPAPFLHAVRDELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + ++ D Q+N + + + VY++ D + V +A V +E + I + Sbjct: 644 GLVHIKAMND--DYYTYDQKNMLLIGRRKKKVYRLGDEVIVKVANVDLENQEIDFK 697 >UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1J0_DESAD Length = 746 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 163/667 (24%), Positives = 271/667 (40%), Gaps = 52/667 (7%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSE--- 67 + + G ++ G FL D +K +I ++ HGDR+ I Sbjct: 68 YGVVEKMNLVTGKLQVQRSGAAFLLPDDKKRKDIYIHTKNLRDAWHGDRVTVAITGSHWG 127 Query: 68 KERESAEPEELVEPFLTRF-VGKVQGKNDRLAIV-PDHPLLKDAIPCRAARGLNHEFKEG 125 +RE ++E F V ++ + P P L I + +E Sbjct: 128 GKREEGRVVRVLERGKQVFPVRVIRPMGGTALLCHPTDPRLDFGIVVEPDEAVVNEPVLD 187 Query: 126 DW---------AVAEMR-RHPLKGD------------RSFYAELTQYITFGDDHFVPWWV 163 D AE+ +GD + + + + DD V + Sbjct: 188 DNGREIYPAESVDAEVDFTRVSRGDILLVAPGEQINPSLWEGRILKMLGDEDDAIVQEAI 247 Query: 164 TLARHNLEKEAP-------DGVATEMLDEG-LVREDLTALDFVTIDSASTEDMDDALFAK 215 A H + P D + E ++E RED+ + FVTID A+ +D DDA+F + Sbjct: 248 VKANHGIPTAFPGKVLAVADALPDEPVEEDFADREDMRDIPFVTIDGATAKDFDDAVFVE 307 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 + +L VAIAD + ++A S LD+ A R + Y P PM P LS+ LCSL Sbjct: 308 KIA-GGYRLRVAIADVSHYVAMESPLDREALKRGNSYYFPKSVEPMFPEALSNGLCSLNP 366 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQV-SDWLENTGDWQPESEAIA 334 + R + + G ++ F A I S+ +L Y+QV + + Q + Sbjct: 367 DVNRLAMTATIEFDKSGAPVNS-SFAPAVIRSQGRLTYEQVYQGVILGEKEEQESLGDLL 425 Query: 335 EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMI 394 ++L ++ ++ + R+ + D P+ + +G +DI R A++IVEE MI Sbjct: 426 PMLKLCEELARKINKRRNARGSLEFDLPEPEILFNLQGRTVDIRPRCRNFAHQIVEEFMI 485 Query: 395 AANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRR 454 AAN A L +K +Y VH G D L +L+ G+ + +T ++ + Sbjct: 486 AANEAVAEFLTEKEIGCLYRVHPGPDEEKLTNLFKVLRKIGISKQIPDPVTPQTLQEVIK 545 Query: 455 ELDAQPTGFLDSR-IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 + + ++ SR + R A+ + HFGL E Y +TSPIR+Y D++ HRLLK Sbjct: 546 DSEGTDQEYIVSRLLLRSMKQAKYEPDNEGHFGLASECYCHFTSPIRRYADLVVHRLLKV 605 Query: 514 VIKGETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIV 569 + E P + I ++ R AER++ L FLKDK G + F I Sbjct: 606 ALGDEHQAIPGQKQLGRIGSAISGTERTAMEAEREILKRLTIIFLKDKVGEE--FTGVIS 663 Query: 570 DISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS--QENGTVQIKGETVYKVTDVIDVT 627 I+ G V + A + L ++ D+ V + +++ I V Sbjct: 664 SIAEFGFWVEFQEVMAEGMVR---LSSLGDDYYTFWSDRQMIVGERTGHAFRLGQKITVR 720 Query: 628 IAEVRME 634 + V +E Sbjct: 721 LESVSLE 727 >UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0LU85_HALO1 Length = 1004 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 155/655 (23%), Positives = 257/655 (39%), Gaps = 38/655 (5%) Query: 23 EGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEP 81 G + G+GF+E++ + F+P + GDR++ S + E++ Sbjct: 297 TGRITVHPAGYGFVELEDGTGTVFVPARHRGAALDGDRVVLNTWSGYKGTEGRVIEVLSR 356 Query: 82 FLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDR 141 + G +Q + + PD P + + K G AV E+ R+P Sbjct: 357 GRAKLTGTLQRTGRAVYLEPDDPRIATDYGHVPLIDGPPQSKVGQAAVVEICRYPTHERP 416 Query: 142 SFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVREDLT 193 L + + DD LA +L E P VA + + + R DL Sbjct: 417 ELVGRLVRVLGKPDDPRTEIEKILAFADLPTEFPRDVARRGDETSTTVRTRDQVDRVDLR 476 Query: 194 ALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNY 253 FVTID + D DDA+ + P ++ VA+AD + ++ +D+ A +R + Y Sbjct: 477 DRPFVTIDPVTARDFDDAVCIEDGPHGGPRVWVAVADVSHYVEIDDPIDREAAVRGVSVY 536 Query: 254 LPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVY 313 LP +PMLP LS +CSL R + R+ L+ DG + + +F AA I S A+L Y Sbjct: 537 LPDRVVPMLPLPLSAGICSLNPEVDRCAMVVRLDLTDDGRVLER-DFAAAVIRSHARLDY 595 Query: 314 DQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKG 372 V+ L + A + LA + QR R + + IL Sbjct: 596 PGVAAALSGDFRGRRDHYRPWAPALSRLAALAQRMRTRRRARGALELTLAEPYVILDADE 655 Query: 373 E--VLDIVA----EPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 V DIV E R A +VEE MIAAN + ++ ++ +H +P Sbjct: 656 AELVRDIVRSKGAEDVRQAYELVEEFMIAANEAVGKYFAERNLPTVWRIHAPPEPDRLHE 715 Query: 427 LAALLKTHGLHVDAEEVLT---LDGFCKLRRELDAQPTGF-LDSRIRRFQSFAEISTEPG 482 L +L G+ + E++ G ++ ++ QP L ++ R A+ ST+P Sbjct: 716 LLPVLANFGIKLTVEDIEAATKPTGMRRIIEAIEGQPAAASLSFQVLRSLKQAQYSTDPI 775 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT------------RPQDEITVQ 530 HFGL Y +TSPIR+Y D++ HR LK + + E Q Sbjct: 776 GHFGLASPFYLHFTSPIRRYADLLVHRQLKHYLHADGKPSGGGARIPAADIDTLAERCAQ 835 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 ++ R ER+ A F++ + G +F + ++ G V L I Sbjct: 836 ISTHERRAVEVEREAVSMYRAYFMRGQVGE--QFTGRVSAVTNFGAFVELDAPFVEGLIK 893 Query: 591 APFLHAVRDELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 L A D + + + D + + + V + R I + ++ Sbjct: 894 LDDLGA--DAFGFDASSMRLRGRRSGLRLGLGDPVTIEVTNVSVARRRIDFKLIS 946 >UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3771C Length = 721 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 160/655 (24%), Positives = 272/655 (41%), Gaps = 35/655 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI-IAVIHSE 67 +K L S+ + + FGF E D YFIP M M DR+ +A I S Sbjct: 73 KGMKVALCSRAGVVPATITRLSRTFGFAETDEGIEYFIPGKCMLGAMPNDRVLLADIASR 132 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 E +++E + G+++ + +VPD I + + F+ GD Sbjct: 133 TGEPEGEVVDILEFGSNQLTGRIEFVDGEPYLVPDTAAKNHMI---ISVRESIPFENGDK 189 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP--WWVTLARHNLEKEAPDGVATEMLDE 185 +AE+ +G R ++ + FG + L H + PD V E + Sbjct: 190 VLAEIV---YRGRRHAEHKVKIILVFGSSEYAASCASSILMIHGAPTDFPDDVKKEAVKI 246 Query: 186 GLV---------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 REDL + TIDSA ++D+DDA+ + + +L V IAD + ++ Sbjct: 247 SEGGVQDYSFNNREDLRDMPIFTIDSAESKDLDDAVSVERTKNG-YRLGVHIADVSHYVK 305 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 S+LDK A R + Y IPMLP+ELS+ +CSL +E R L+ + L ++G + Sbjct: 306 GNSELDKEAMRRGTSIYYADKVIPMLPKELSNGICSLNPDENRLTLSAFIDLDSEGNML- 364 Query: 297 NIEFFAATIESKAKLVYDQVSDWL--ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 + F + I S+ K VY +++ L E + + + + ++ + + ++ ++ + + Sbjct: 365 SYRFCKSVIRSRVKGVYSEINKILAGEESAEIREKYASVRDVLAVMDELADKLIAKKERR 424 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 + + + I+ E G ++ R + RI+EE M+ AN AA++ R+K +Y Sbjct: 425 HAPEIETTESKLIIDENGICCGVLPRERGKSERIIEEFMLTANEAAAKLAREKEIPFVYR 484 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQS 473 +H A + L LL GL ++ R ++ + R + Sbjct: 485 IHEAPPEAKVENLHELLPKFGLECPHFTEFKPHHAAEILRSAKGTDKFEAVNLMVLRSMA 544 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE------- 526 A+ STEP HFGL LE YA +TSPIR+Y D+ HR++ ++ G Sbjct: 545 KAKYSTEPVGHFGLVLEDYAHFTSPIRRYPDLAIHRIITDILAGYDNKWLSKRYSGFAVN 604 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + + ER+ D A ++K G F A I ++ G L N Sbjct: 605 AAERSSAAEIRAVTIERECEDCYKAEYMKAHIGE--TFRARISSVTEFGFYAELP-NTVE 661 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 I L E S+ + T Y + +DV + V + +I Sbjct: 662 GLIHIRTLP--EGEYDYSEPVSLTEKFTGTTYSLGMEVDVICSAVNVSEGTIDFV 714 >UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6T0_9FIRM Length = 704 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 143/643 (22%), Positives = 266/643 (41%), Gaps = 34/643 (5%) Query: 20 PRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEK---ERESAEP 75 EGV + FGF+ V+ + F+ + GD++ + EK + Sbjct: 71 NIYEGVFEKGRGLFGFVNVEGLDEDIFVVGSESMDAFSGDKVKVEVIKEKEGDRKREGRI 130 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 E+ E + VG + +V D+P + I + K D V E+ Sbjct: 131 VEITEKVKRQTVGTFYKEKTFGFVVSDNPNFTNDIYI--PKAGIKYAKNKDKVVVEITDF 188 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGL-------- 187 P K +++ ++T+ + D++ V + +++ E E + Sbjct: 189 P-KDKKNWVGKITKVLGRKDENGVDIEALIYEYDVPYEFSHLALKEADELEFDSFDKFKG 247 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R+DLT ++ TID + +D+DDA+ + + L V IAD + ++ S++DK A Sbjct: 248 KRKDLTDVNIFTIDGPTAKDLDDAVSIVKKEN-EYVLSVHIADVSNYVKRNSEIDKDAYE 306 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + Y IPMLP+ L ++LCSL E + + M ++ +G + D F+ + I+S Sbjct: 307 RGTSIYFADRVIPMLPKTLCENLCSLNPKEEKKAFSVDMRINKEGKLLD-YNFYKSIIKS 365 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 KAK VYD+V++ + + D + E E + + ++ + + R+ + D + FI Sbjct: 366 KAKFVYDEVNELFDGSKDLREEYYTYEEDLNTMKELYELLRQRRYVEGNLDFDVDE-NFI 424 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 E G V D+ R IA RI+E+ M+ AN A GIY VH D Sbjct: 425 TVENGVVTDVSLRERGIAERIIEQFMLVANTSACEFFSSMGLNGIYRVHEEPDKEKLSGF 484 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPGPHFG 486 G + + + + ++ + + + R A +TE HF Sbjct: 485 IKFANALGYKLRLHDGHYSKELEEFLKTIEGDKNEQLFKTVLLRCMKKAVYTTENKGHFA 544 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDEITVQMAERRRLNR 539 L +E Y +TSPIR+Y D++ HR+L ++ G E ++ +++ R + Sbjct: 545 LAIENYTHFTSPIRRYPDLMVHRILSNILLGNIDLNNLEKEREKMEKKANHLSKMERRSE 604 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 ER+ +++++ D + + S GM V+L +N I + + D Sbjct: 605 EMERESDKIFICQYMENFI--DEEYEGRVSGFSSKGMYVKL-NNSIEGVI---YFTNLND 658 Query: 600 ELVCSQENGTVQIKGE--TVYKVTDVIDVTIAEVRMETRSIIA 640 + E + + + + D I++ + V R + Sbjct: 659 DYYIYDEEHYSLVGRDFGRRFTMGDKINIKVISVSKLKREVEF 701 >UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H5E0_9FIRM Length = 705 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 161/635 (25%), Positives = 273/635 (42%), Gaps = 35/635 (5%) Query: 31 KGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSE---KERESAEPEELVEPFLTRF 86 K F F+ ++ + FIP + M GD ++ + + + E ++E Sbjct: 76 KNFAFVMLEDESGDIFIPGRFTRGAMPGDSVLVEKFAHPRVEGSDEGEILAVLEQKND-M 134 Query: 87 VGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAE 146 VG V+ RL VPD AI R K+GD E+ + + + Sbjct: 135 VGTVRRIEGRLKFVPDDC---PAISMTIQRDCEGGAKDGDKVAVEILQRGTRQEDHRVG- 190 Query: 147 LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---------LDEGLVREDLTALDF 197 ++ ++ L ++ P+ V E ++ R DL AL Sbjct: 191 VSMRFGSCEEAKRCAKALLYAKDIHTRFPEKVRDEAKKFEDMTVSEEDCKGRMDLRALPI 250 Query: 198 VTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGF 257 TIDSA T+D+DDA+ LP +L V IAD + ++ GS+L++ A RA + Y Sbjct: 251 FTIDSAETKDIDDAVSLTRLPGGGYELGVHIADVSHYVKPGSELNEEAFNRATSVYYADQ 310 Query: 258 NIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVS 317 +PMLP+ LS+ +CSL E+R +C M L DG + D +F + I S+ K VY +++ Sbjct: 311 VVPMLPKSLSNGICSLNEKELRLAFSCLMRLDQDGNLTD-YKFVKSIICSRVKGVYSEIN 369 Query: 318 DWLENTGD--WQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVL 375 L T D Q + + +Q+ + ++ R R + + + + IL E G + Sbjct: 370 ALLAGTADAETQAKYAEVLDQLPAMKELYAHRARLRKERGCIDFESGEVKLILDENGHCI 429 Query: 376 DIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHG 435 D+ + ++EE M+ AN CAA R K +Y VH + + L +LL+ G Sbjct: 430 DVKKRTSGESEAMIEEFMLLANQCAAHFARVKQIPFVYRVHEEPNGEKLERLHSLLQACG 489 Query: 436 LHVD-AEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYA 493 ++ A+EV T + + P +++ + R S A +P H+GL L+ YA Sbjct: 490 INDHFAKEVPTPKELSAILEGVRGTPFEQIVNTGMLRCMSKACYEEKPKGHYGLVLKDYA 549 Query: 494 TWTSPIRKYGDMINHRLLKAVIKGE-------TATRPQDEITVQMAERRRLNRMAERDVG 546 +TSPIR+Y D+ HR++ ++ G T ++ + Q +ER L ER Sbjct: 550 HFTSPIRRYPDLAIHRMMTDLLSGTDKETMIVRYTDFAEKASKQSSEREVLAVQIERKAE 609 Query: 547 DWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE 606 D+ A + + G + I +++ G+ V L +NG F+PA L A L Sbjct: 610 DYYKAEYARRHLGEC--YEGIISGVTQRGIFVEL-ENGVEGFVPASSLTATGTTLTEG-- 664 Query: 607 NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + D + +TI + + Sbjct: 665 IRLSDPASGKTWSLGDSMMITIVRADINLGKVDFE 699 >UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWH9_9PROT Length = 707 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 176/654 (26%), Positives = 282/654 (43%), Gaps = 34/654 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE 67 +Q + G V A GFGF++V+ +K +F+P +M +MHGD + + Sbjct: 61 SQRSHAGKTAQQSYTGKVSAHPDGFGFVDVEGREKGFFLPHEEMNGLMHGDIVEVRPVRK 120 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + RESAE +VE T VG+ + + P + AI A G +GDW Sbjct: 121 RGRESAEVVRIVEHASTVLVGQYLVQGKIAVVQPRSRNMPQAILI--AHGDAGTASDGDW 178 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE------ 181 E++R ++ + + + +A L+ + P V E Sbjct: 179 VRIEIKR----DAGHVRGKVQEVLGDNLSPSRLIDLIVAEQQLDVDFPPAVIAEANAFAD 234 Query: 182 --MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + + R+DL + FVTID D DDA+ + + V+IAD + ++ S Sbjct: 235 QVLESDIKGRKDLRHIPFVTIDGEDARDFDDAVCVLPRGEG-FEAWVSIADVSHYVRPHS 293 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LDK A R+ + Y P IPMLP +LS+ LCSL + R + RM A+GT +I Sbjct: 294 ALDKEALARSNSFYFPDRVIPMLPEKLSNGLCSLNPHLPRLGMTVRMRFDANGT-RRSIH 352 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 + + I S+A+L Y Q S WLE + E + E + A++ ++ + R + Sbjct: 353 VYESVIHSQARLTYTQASAWLEERDETAVEKPELREMLDDAARLFRKLEKKRKQRGALDL 412 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 D P+ R +L + V+DIVA R IA R++EE M+AAN A + +Y +H Sbjct: 413 DMPEVRALLQDD-VVVDIVASERNIAQRLIEEMMLAANTAVAEYMDAHECALLYRIHPAP 471 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCK------LRRELDAQP-TGFLDSRIRRFQ 472 + + L L GL V ++ D + + + + +P L + R Sbjct: 472 ERQAIETLNEFLAPFGLFVKLPKIKEKDSQVRPGDVQLVLEQSEGKPFAHVLHRLVLRSM 531 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-----EI 527 A+ + HFGL ++YA +TSPIR+Y D+I HR LKA+I+GE R Q +I Sbjct: 532 QQAKYTPVNVGHFGLAYDSYAHFTSPIRRYADLIVHRRLKALIRGEDPNRVQPVGTLADI 591 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +Q + + R + E D L A F G A I +++ + + A A Sbjct: 592 GLQTSTQERKQQRGEWDTQAMLAALFHSKDVGK--TMPARISGLTKRRIFFEIEPTMAEA 649 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + L + +G + Y + D +DV I I R Sbjct: 650 GLAVDDLPGAFELDETGHR--LAARRGGSAYHLGDRLDVVIDSTDPVRGQINVR 701 >UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LP7_SACD2 Length = 646 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 215/658 (32%), Positives = 337/658 (51%), Gaps = 30/658 (4%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M L L+QLKQ +H A G V +T FGF+ + + F+ P +M+ V+ GD Sbjct: 1 MLDKTTLSQLSQLKQAIHESKEYATGTVASTNGRFGFVRLTDGRDAFLDPEKMQFVLPGD 60 Query: 59 RIIAVIH-SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 + ++ ++K++ A E+L++ L RFVG + K + VPD P + I Sbjct: 61 EVKILVTTNDKKQLEATIEQLIDSPLKRFVGTYRVKGNAHFAVPDDPKVNRWIFIPPKS- 119 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 KEG+ A++ +HP + D A++ + I DDH + + T+A+++L Sbjct: 120 -RKGCKEGEKIAAKIIQHPAQ-DGKAQAKVIERIGQPDDHHIEYKYTVAKYDLSP-WNKE 176 Query: 178 VATEML---------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 E L +E RED T L FVTIDS +T DMDDA+ A D K L VAI Sbjct: 177 GEDEQLKKIRASIEAEEFGEREDYTQLPFVTIDSPTTRDMDDAVHI-AEQDGKTVLTVAI 235 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 ADP ++IA GS L K A+ +A + Y+ G IPMLP L++D SL + RP L C +TL Sbjct: 236 ADPASFIAPGSPLAKLAERQAQSTYMLGGIIPMLPESLANDCFSLVEGKKRPALVCTITL 295 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRG 348 + DG +ED +F A I+SK KL Y QV+++LE T + + A+ + L+++ R Sbjct: 296 ANDGAVED-YKFERAVIQSKYKLNYQQVAEFLEGT-NIEGLPADAADNISKLSELATLRY 353 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 ++R H L+ +D+ DY L +KG++ +I R +A+++VEEAM+ N CA L Sbjct: 354 QYRTEHNLIGQDQLDYDIRLDDKGKISEIRPRSRTVAHKLVEEAMLLTNQCAGEFLAQNK 413 Query: 409 GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSR 467 G++ VH GF + ALLK + ++ L+G +L + L A L Sbjct: 414 L-GLHTVHGGFRLDRIGEVNALLKEEQIT-PEGDITELEGNLQLIKALSANERQRNLIPA 471 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI 527 +RR AE+S E GPH G+G + YAT TSPIR+Y D+ NH + +V+ G + Sbjct: 472 LRRMMQSAELSDEAGPHMGMGFKHYATSTSPIRRYADLYNHWAIHSVLTGSKPYTFKPHQ 531 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLK-DKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 ++ E + R A+R++ WL ++++ G + R ++ +++ G VRL++NG Sbjct: 532 LERLKETLQAGRQADREIYQWLLCQYVEASLIGFEGR--GKVRIVTQQGFGVRLIENGVD 589 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 FI P E + T+ + G Y+ +DV + V E R I V+ Sbjct: 590 GFIAFPK----SQEKQFDAKRMTLTVNG-VTYRADCEVDVKVVSVDQEKRRIAYALVS 642 >UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6L0_9BACT Length = 727 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 158/676 (23%), Positives = 262/676 (38%), Gaps = 53/676 (7%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVI- 64 + + + L G+++ G L E K FI P + MH D+++A + Sbjct: 64 IRKDRYVLPQTADLVTGILQVHANGHAHLLSETPGVKDVFISAPNLGTAMHSDKVVARLM 123 Query: 65 -----HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLN 119 + A +++E VG +Q + ++PD P L+ I + Sbjct: 124 HEGREQRRGGAQEARVIKILERANDTIVGTLQSSKNFFYVIPDDPRLQHNIYVKPE---P 180 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 + GD V + + E+ + + V + ++ L PD V Sbjct: 181 KGAQVGDKVVVRFEEWESR-HVNPEGEVIEVLGPAHAPGVDMLSIIRKYQLPMAFPDAVE 239 Query: 180 TEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 E DE RED VTID +D DDA+ + L +L V IAD Sbjct: 240 REAEKIFETVHPDEIARREDCRGQFIVTIDPDDAKDFDDAIHVERLARG-WRLGVHIADV 298 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ G LD+ A+ R + YL IPMLP LS+ +CSL+ R + Sbjct: 299 SHYVRPGHPLDREARKRGNSTYLADRVIPMLPERLSNGICSLKPGVERLTFGAFIDFDES 358 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTG---------------DWQP----ESEA 332 G I F + I+S A+L Y Q LE+ D +P + Sbjct: 359 GKIR-KARFARSVIKSAARLTYRQALAILEDRPVPATPNYERGGKVHLDAKPVPLNVTPE 417 Query: 333 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA 392 + E+V+L ++ + R + D P+ + L ++G + + I++++VEE Sbjct: 418 LRERVKLAWELASLLRKNRFAAGSLDLDFPEVKVWLDDQGRAVRLEKMDNDISHQLVEEF 477 Query: 393 MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKL 452 M+AAN A+ L+D+ +Y +H DP L ++G A ++ +L Sbjct: 478 MLAANEVVAKALKDRKIPTVYRIHEDPDPDRLADYRELAISYGFR--AGDLTQRRELQRL 535 Query: 453 RRELDAQPTGF-LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL 511 +P + L + + A +T+P H+GL Y +TSPIR+Y D++ HR L Sbjct: 536 LAATRGKPEEYALKLGLLKSLKRARYATDPVGHYGLAKVNYTHFTSPIRRYADLLVHRAL 595 Query: 512 KAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKA--GTDTRFAAEIV 569 G EI ++ R + AERD F + + A +V Sbjct: 596 AGEKLGGVGA--VGEIAAHISTTERTSADAERDSTMLKKMEFFQRQLTARRPEEMRAIVV 653 Query: 570 DISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT--VQIKGETVYKVTDVIDVT 627 D+ G+ V L D I L D+ V + Y++ DV+ V Sbjct: 654 DVRSYGLVVELPDCLITGLIHVSSLP---DDFYQFDSTRLRFVGRRKNKTYQIGDVLQVI 710 Query: 628 IAEVRMETRSIIARPV 643 ++ V R I PV Sbjct: 711 VSRVDAYKRQIDFVPV 726 >UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=RNR_BUCAI Length = 731 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 150/656 (22%), Positives = 269/656 (41%), Gaps = 40/656 (6%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVI--HSEKERESA 73 +G V G+GFL + ++ ++ QMK +HGD I+A I K R SA Sbjct: 80 ESLKIVKGKVIGHRDGYGFLRTETLKEDLWLSSEQMKSCIHGDIILAHIVETHGKRRSSA 139 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 +L++P VG+ + ++PD I +A + + G +++ Sbjct: 140 RFLKLLQPNNILIVGRYYIDDKIKFVIPDDTRFNFKIFIFSA--IKDDISIGSIVSVKLK 197 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------E 185 +HP++ R + + + + + L H + V ++ + + Sbjct: 198 QHPIRNSR-VQGFIVEILGKEMGTNLAIEIALRTHLIPSLWSKEVKKQVYEISRKINQYD 256 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKAL--PDDKLQLIVAIADPTAWIAEGSKLDK 243 R DL F TID D DDA+F K P++ L VAIAD + ++ + LDK Sbjct: 257 FKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPEEGWILWVAIADVSCYVQPNTPLDK 316 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 AA R + Y P IPMLP ++S DLCSL+ N R L C M+LS G + + + + Sbjct: 317 AALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICEMSLSKQGELI-SYKHYEG 375 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I S + Y+++ + + + + + L+ + + + ++ + + Sbjct: 376 IICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSCLQNIFNKDNISKKGIYFENIE 435 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 +F+L + I R A++ +E MI AN+ +AR + ++ H N Sbjct: 436 PKFVLDSNLRIKSIYQNIRNDAHKFIESCMILANVASARFVEKYKYPVLFRNHDRPKKDN 495 Query: 424 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPG 482 +L L G + + + L + + +P + + + R + A S + Sbjct: 496 VVSLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDRPEYEMIQTVLLRSMTQAVYSPDNR 555 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD---------------EI 527 HFGL L +Y +TSPIR+Y D+I HR++K ++ + T + +I Sbjct: 556 GHFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKNTSKSNYNFYSAHLYSTGEIKKI 615 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 + R A RDV DWL F+ K G I +++ G VRL Sbjct: 616 GAHCSITERRADEANRDVIDWLKCDFMYKKIGC--ILNGVISNVTTFGFFVRLNQFFIDG 673 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKG--ETVYKVTDVIDVTIAEVRMETRSIIAR 641 + ++++ D+ G I + Y + D + V + V + + I Sbjct: 674 LVH---INSLNDDYYYFDSLGLKLIGKSTKNTYCLGDALKVKVISVNLNEKKIELS 726 >UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiroplasma citri RepID=Q14Q19_SPICI Length = 705 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 148/664 (22%), Positives = 271/664 (40%), Gaps = 41/664 (6%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 Q + GV+ +KGFGF+ + Q+ Y++ + + D+++ ++ + Sbjct: 53 QQHRFYYFDPKIYLRGVISINKKGFGFIKINENQEEYYVKQDDLNNALDQDQVLFILKKQ 112 Query: 68 K-----ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 K ++ A+ ++++ VG ++ + + +L + + A +N + Sbjct: 113 KNDNNSKKAEAQVIKVLKRNNEYVVGVIKKNRHQQKYLE---ILNNKLTQYRAEIINLDE 169 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 + V + + ++ + I + V L N+ + + TE Sbjct: 170 AIENTIVKGIITSINSKNNLMQVKIIEIIGNTNQVGVDVLAILHEFNIRTKFNEEALTEA 229 Query: 183 LD-----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 R DL FVTID ++D DDA+ K + L+VAIAD Sbjct: 230 NQINQNIDVATMLANKSRRDLQTEMFVTIDGNDSKDFDDAILVKKNQNGNYLLLVAIADV 289 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + S LDK A R + YL +PMLP +LS+ +CSL E R L C M + Sbjct: 290 AHYAPHNSYLDKEAFERGCSVYLIDRVVPMLPEKLSNGICSLNPFEPRLTLICEMEIDQQ 349 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWR 351 G + ++ + A I SKA+L YD+V+ + S IA+ + L Q+ Q + Sbjct: 350 GHVVNS-SIYEAVIISKARLTYDEVNKLF--CQEKNHISAEIAQMLFLAQQLYQILVWKK 406 Query: 352 HNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 + +V D + +F++ + G++ DI+ R A +++E MI AN A + Sbjct: 407 EHDGVVDFDLDEPKFVVDKNGKIKDIIVRERADAEKLIESFMIRANETVAETIYWMDLPF 466 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDA--EEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 +Y VH P L L GL++ E + + D L + D + + + + Sbjct: 467 VYRVHDKPKPKKLFDLYTQLSYLGLNIKGKLENIHSKDLQQILNKLKDKENFKVISALVL 526 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGETATRPQDE-- 526 R A+ S HFGL Y +TSPIR+Y D++ HRLLK + +G+ ++ Sbjct: 527 RSMEKAKYSDINDGHFGLASWCYTHFTSPIRRYPDLVVHRLLKEYLFQGKVKITDLEQTR 586 Query: 527 -----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 + Q + ER+V A +++DK G + + I ++ G+ V L Sbjct: 587 AFVSHASQQSSLAELRAMECEREVDKMKEAEYMEDKIGYE--YNGIIAGVTSFGIFVELP 644 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 N + L +++ E + + Y + + + + + + R I Sbjct: 645 -NTIEGLVHITDL---KNDYYVFDEKSLKLIGERKRKEYFLGKKVRIRVKKASKKLRQID 700 Query: 640 ARPV 643 V Sbjct: 701 FELV 704 >UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH0_9FIRM Length = 713 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 158/657 (24%), Positives = 273/657 (41%), Gaps = 40/657 (6%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAV---IHSEK 68 + G V + FGF+ + + F+ ++K + GD +IA +E+ Sbjct: 58 YYISDIRTVFTGKVATLSRTFGFVTNLATGEDCFVSGGKLKGAVPGDTVIAREIAAKTEQ 117 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 +AE +++ F G + + L + PD P + + KEGD Sbjct: 118 RSATAEVLAVLDVSEELFGGVIVKEGKMLKVQPDSL----GCPPLTILKVKEQIKEGDKV 173 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT-------E 181 + +R+ + + + + L ++N+ + + Sbjct: 174 LFSIRKRGEHHSEHIVD-IVRVLGSSEYAKSATEAYLIQNNIPVDFSEEALNQAKQYVNA 232 Query: 182 MLDEGLV--REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 ++DE R DL L TID A T+D+DDA+ + + +L V IAD + ++ EGS Sbjct: 233 VIDEKQTAKRLDLRDLPIFTIDGADTKDIDDAISIERT-EGGYKLGVHIADVSHYVTEGS 291 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD A R + Y+ IPMLP+ELS+ +CSL R +C M +S GT++ + Sbjct: 292 PLDNDAFERGTSVYIADKVIPMLPKELSNGICSLNPGVDRLAFSCLMEISDKGTVK-KYK 350 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQ--PESEAIAEQVRLLAQICQRRGEWRHNHALV 357 F I S+ + VY +V+ L+ T + Q + + + + + ++ ++ Q + R + Sbjct: 351 FAKTVIRSRVQGVYSEVNSILDGTANAQIKRKYKDVIDCIPVMNELAQILIKKRKDRGAP 410 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + + I E G +DI + ++ I+EE M+ AN AA+V K +Y VH Sbjct: 411 DIKSSESKVICDENGICIDIKPRIQGVSEGIIEEFMLMANNSAAKVGMKKEIPFVYRVHE 470 Query: 418 GFDPANADALAALLKTHGLH-VDAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFA 475 ++L L+ G++ + E F KL E P + +RI R + A Sbjct: 471 NPPAEKIESLKTTLEALGVNPLGINEKAEAKNFAKLLEETADDPKNIIINRIVLRTMAKA 530 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-------EIT 528 + S +P HFGL ++ YA +TSPIR+Y D+ HR+L + + A + + + Sbjct: 531 KYSEQPIGHFGLVMKEYAHFTSPIRRYADLSIHRILTDYVSRKGADKLKKKYGEFSVKAA 590 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 Q + AER D+ A ++K G + F I + G+ V L N Sbjct: 591 AQATKTELSAVAAERSCEDFYAAEYMKKHIGEE--FDGIISGVIGSGLFVELP-NTVEGK 647 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKG--ETVYKVTDVIDVTIAEVRMETRSIIARPV 643 I L E NG G T+Y + D + V + I + Sbjct: 648 IDVRSLS----ENYFEVRNGIALYDGVAGTMYTIGDKVRVKCINANVNLGQIDFELI 700 >UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCD0_PLALI Length = 808 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 153/685 (22%), Positives = 266/685 (38%), Gaps = 65/685 (9%) Query: 14 QLHSQTPRAEGVVKATEKGFGFLEVDAQ------KSYFIPPPQMKKVMHGDRIIAVIHSE 67 ++ G +K +G + ++ + Y + + GD++ A+I + Sbjct: 61 KVPVAREHIIGTIKRAARGHAWFTPESLANQPHIEPYTVAAEDAGSALTGDKVSAIILKK 120 Query: 68 KE---RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 + + + +++E T+FVG+ + + D+ + P + Sbjct: 121 RGPNGKIAVRVIDILERATTQFVGEYHESRGKGYVTVDNSRFER--PIDVGDPGAKGVRP 178 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 GD V EM P + A L + + + V + L E P+ V E Sbjct: 179 GDQVVIEMVHFP-EFSTPGEAVLLKVLGKRGEPGVDLQSIIYEFGLPDEFPESVLEESRL 237 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 D+ R DL +TID + D DDA+ K D L V IAD ++ Sbjct: 238 QAQLFSEDDIGDRLDLRDELIITIDPLTARDFDDAISLKRHEDGSWTLGVHIADVAHFVR 297 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 G++LDK A R + YLPG +PMLP LS+ L SL+ ++VR V + + S DG ++ Sbjct: 298 PGTELDKEAIRRGNSVYLPGKVLPMLPEVLSNALASLQQDKVRFVKSAFIEYSPDGMVK- 356 Query: 297 NIEFFAATIESKAKLVYDQVSDWLEN--------TGDWQPESEAIAEQVRLLAQICQRRG 348 + F A I+ + + Y+QV L N + + E I + + + ++ Sbjct: 357 HTSFANAAIKVRRRFAYEQVMPLLLNRQSPGEHPAPEGETVPEEICQLLERMYELAMILR 416 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 + R + + + + G V +++I+EE M+AAN+ A + Sbjct: 417 KRRFSRGALELSLGEVELDCNDDGNVTGAHRALHDASHQIIEEFMLAANVAVAEEFDRRG 476 Query: 409 GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSR 467 F + VH D A + T G + L E+ QP F L+ Sbjct: 477 WFFLRRVHDSPDELRMQNFAKFVATLGYDLPR--AQDRQAIQALLNEVAGQPEAFPLNYA 534 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-------- 519 + R AE S E H+ L ++ YA +TSPIR+Y D+ HRLL+ VI + Sbjct: 535 LLRSLKQAEYSPEKIGHYALAVDNYAHFTSPIRRYPDLTIHRLLEHVIADASFTHSVPAA 594 Query: 520 --------------------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 + ++ Q + R AER++ R+L DK G Sbjct: 595 ESLNTASDRKKSKSSRADLLSEADLRQLGKQCSLTERRAEKAERELIKIRLIRYLADKVG 654 Query: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ-ENGTVQIKGETVY 618 + A I + R G+ + ++ A + L D Q + + + V+ Sbjct: 655 LE--LNATITGVERFGLFCQGIELPAEGLVHLSDLPG--DYYDVDQIAHAVIGRRSGRVF 710 Query: 619 KVTDVIDVTIAEVRMETRSIIARPV 643 ++ D + V ++ V R + R V Sbjct: 711 RLGDPVRVQVSSVDPAKRELNFRIV 735 >UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8Y7_9GAMM Length = 663 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 200/656 (30%), Positives = 327/656 (49%), Gaps = 32/656 (4%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 MF ++ L L QLK+ + AEG+VK T++ FGF+ + + F+ P +M KV GD Sbjct: 1 MFDNSTLSQLKQLKKDIEDSKEYAEGIVKGTQRKFGFVVLADGREIFLNPDEMTKVFPGD 60 Query: 59 RIIAVIHSEKERE---------SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA 109 + +I +E+ + S + L++ L F G+ K + PD P L Sbjct: 61 NVKILITTEQSKTKDKNAKPKVSGVLQALLQSPLKEFNGRYIIKGQGHFVEPDLPQLNRW 120 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 I A GD+ ++ RHP ++ A++ + I + + ++ Sbjct: 121 IFIPPA--ARKNAAAGDYIRCKLSRHPYPNEKP-QAKILEVIGNLEKKGIETEYVTSKFQ 177 Query: 170 LEKEAPDGVATEMLD-EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 L+ D + D + R+D+ + FVTID+AST DMDDAL+ D+ +L+VAI Sbjct: 178 LDPVWKDNWEESLADIDFSQRKDMQDIPFVTIDAASTRDMDDALYVSK-SDNGWRLLVAI 236 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 ADP A+I S+LDK RA + Y+PG+ IPMLP +L++DLCSL ++VRP L C++ + Sbjct: 237 ADPGAFIISNSELDKQIAQRAISTYMPGYAIPMLPAKLANDLCSLAPDQVRPALICQIDI 296 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE--AIAEQVRLLAQICQR 346 +A G I + A + SKAKL YD VS +L+ D ++ + L ++ Sbjct: 297 NATGDIVSH-NIVEAVMSSKAKLSYDDVSRFLDQRDDTITSADCSNHGHVLTQLKELSDA 355 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + LV +RPD R +L G++ I + + A+++VEE MI AN C ++L D Sbjct: 356 LLINRKENHLVIPNRPDLRLVLNANGKMDRIELQNKNSASQVVEECMILANRCVTQILDD 415 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LD 465 I+ H GF P + L + L + +V DG+ + + +D F L Sbjct: 416 ---DAIFVSHPGFRPERVADVCKLAEEQ-LSLTDIDVTQPDGYRHIMKSIDDDALDFPLR 471 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD 525 + + R S A +S + PHFG+GL +Y T+TSPIRKY D++ HR++K ++G TR D Sbjct: 472 AVLSRLLSRARLSNKRLPHFGMGLSSYTTFTSPIRKYTDLLVHRIIKEKLRGLPPTRCSD 531 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 E + +R+ +R A + WL +F++ G + F + I+ G VR+ +N Sbjct: 532 EQLEAIQQRQDNSRQARSQMEQWLKCQFIQPLVGQN--FIGRVSQINSNGFTVRIDENLI 589 Query: 586 IAFIPAPFLHAVRDELVCSQENGTVQIKGET-VYKVTDVIDVTIAEVRMETRSIIA 640 F+ L S + +++K +T ++ I++ + EV + RSI Sbjct: 590 EGFVETRILPD-----KYSFDPMRLRLKSKTLTIELDQAIEIIVKEVDCDQRSIRF 640 >UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID=B8DP48_DESVM Length = 1037 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 155/644 (24%), Positives = 258/644 (40%), Gaps = 33/644 (5%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKERE- 71 L Q G + G GF+ + + ++ P QM HGD+++ + + + Sbjct: 71 LVEQLRLVTGTLSIQRSGMGFVLPEEKGRDDIYVHPYQMGDAWHGDKVVVALLPGRHGKN 130 Query: 72 -SAEPEELVEPFLTRFVGKVQGKNDRLAIV--PDHPLLKDAIPCRAARGLNHEFKEGDWA 128 ++E +V + R +++ P P + + + + + ++GD Sbjct: 131 PEGRIVRVLERGRKEIPARVVRRMGRHSLLCRPADPRMAVSFVVDMS-AVEEKAEKGDLV 189 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD---- 184 VA G + + D+ V + H++ + P V E D Sbjct: 190 VAAPGEKVEDGLWAATG--LAVLGADDNVLVQERLVKINHDVPGDFPPEVLEEARDLPAV 247 Query: 185 ----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 + R DL L+FVTID A D DDA++ + +L VAIAD ++ GS Sbjct: 248 PGRDDMEGRIDLRHLEFVTIDGAKARDFDDAVYVEE-QGTGYRLWVAIADVAHYVRPGSA 306 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 +D+ A+ R+ + Y P PMLP LS+ LCSL R + ADGT +F Sbjct: 307 MDREAQARSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAETFFYADGT-PGRSKF 365 Query: 301 FAATIESKAKLVYDQVS-DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 +AA IESKA+L Y QV+ +E + + + + + R + Sbjct: 366 YAAIIESKARLTYGQVNRAIIEKDEKERRLLTPVLPLLERAEALARLLNAKRSERGSLDF 425 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 D P+ I GE +DI + R ++I+EE MIAAN AR L +K +Y VH Sbjct: 426 DLPEPEVIFNIYGETVDIGRKVRHFGHQIIEEFMIAANEAVARFLTEKNARFLYRVHPEP 485 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEIS 478 D + L +L L + + + FL +R+ R A + Sbjct: 486 DTEKLEGLFKVLGRTSLAQHLPGKASAKALQGVLQAAKGSDQEFLVNRMALRTMMQARYA 545 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-----TATRPQDEITVQMAE 533 + HFGL E Y +TSPIR+Y D++ HR L+ + R I + Sbjct: 546 PDHEGHFGLASECYCHFTSPIRRYADLVVHRALRRTLGLPVNGPLPGERALLTIADTLNT 605 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R+ AER++ + FL ++ G + F I I G V + A + Sbjct: 606 NERVAMEAEREILKRITVLFLSERVGEE--FTGVISGIIDFGFFVEFNEVMAEGMVR--- 660 Query: 594 LHAVRDELVCS--QENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 L ++ D+ + V + +++ + V +AEV + Sbjct: 661 LSSLDDDYYGYLPERQELVGERTGRSFRLGQTVTVRLAEVNVAR 704 >UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n=3 Tax=Marinobacter RepID=A1U792_MARAV Length = 660 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 200/647 (30%), Positives = 301/647 (46%), Gaps = 24/647 (3%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS- 66 L QLK + G VK+T FGF+ +D + F+PP +M+KV+ GDR+ H Sbjct: 10 LRQLKTDIKQNKVVFPGTVKSTNGRFGFVALDEGRDVFLPPEEMQKVLPGDRVNVTEHEV 69 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 EK + +EL+E LT FVG+ K + P+ P + I + D Sbjct: 70 EKGKTQGVVDELLESHLTTFVGRYLIKGKGHFVAPETPGINRWIFIPPKE--RKGAQPDD 127 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV---ATEML 183 + ++ RHP+K + A++ + I + + TLA +L P+ V A + Sbjct: 128 FIYCQIHRHPIKDGKG-QAKVLRVIGKAGEPGIERAFTLANFDLADAWPEEVQTQADALT 186 Query: 184 DEGLV-----REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 +E + RED T +VTIDS T+DMDDAL A L +AIADPTA I G Sbjct: 187 EESITSHREGREDRTEQPYVTIDSPGTQDMDDALMATPNATG-WTLSIAIADPTAMIEPG 245 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S ++ A RA Y PG +PMLP +S LCSL R L C + ++ DG++ D Sbjct: 246 SPAEEEAFNRATAIYFPGEPLPMLPDAISTRLCSLMPEVPRLALVCDLQVNNDGSLGD-Y 304 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPES--EAIAEQVRLLAQICQRRGEWRHNHAL 356 F A I S+ KL Y+ VS +E D + ++ EA+A + L Q +WR HAL Sbjct: 305 SFHQAVIRSQGKLSYELVSHLIEGREDDEIKALPEAVANSLDQLHQAATALRKWRSEHAL 364 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + DRP++R L E + I + A+R+VEE M+AAN CAA L +K G G++ H Sbjct: 365 LSNDRPEFRLRLDENKRIRVIEPAVQNEAHRLVEECMVAANRCAADFL-EKQGQGLFIQH 423 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQSFA 475 G AD + LL+ + H+ + + +GF L + D + S + R + A Sbjct: 424 PGLRDDRADNIRKLLEGYAPHLAELDATSAEGFKALMKHTDGLQADVPVKSILSRQLARA 483 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERR 535 E+ EP PH G+GL AY T+TSP+RK+ D HRL+KA + + + + + Sbjct: 484 ELGFEPAPHQGMGLAAYTTFTSPLRKFSDFYVHRLIKAALWDQPIKALNPQQLESLQTTQ 543 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 RMA + WL + + K I G VRL NG F+ L Sbjct: 544 FRARMAANTLEAWLKSDYAKGLPADP--MEGTITRTMPSGFFVRLDCNGLEGFVSCKDLE 601 Query: 596 AVRDELVCSQENGTVQIKGE-TVYKVTDVIDVTIAEVRMETRSIIAR 641 + + ++++ + V+ + V E R I + Sbjct: 602 G---KFSFDPVTLRLVHNKNGRIFQLDQRVTVSFSGVDEERRQINFK 645 >UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepID=RNR2_LACLA Length = 665 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 152/679 (22%), Positives = 276/679 (40%), Gaps = 51/679 (7%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ----KSYFIPPPQMKKVMH 56 M Q + L + L Q ++GV KGFGF+ + +I K M Sbjct: 1 MVQLSELASALNQ------TESKGVFSKHPKGFGFVHPEDATDKTNDIYIGKNDTKFAMD 54 Query: 57 GDRIIAVIH---SEKERESAEPEELVEPFLTRFVGKVQGKNDR--------LAIVPDHPL 105 GD++ + +EK S + ++ E + VG + ++R I + Sbjct: 55 GDKVTVKVTYPKTEKRGASGQITKINERAVVDTVGTYRSLSNRQVKALGYKGRIELYNDR 114 Query: 106 LKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTL 165 + D + + +E D ++ ++P ++F ++T I + + L Sbjct: 115 ISDTLYIKQPL---SGVQEEDVVSLKITQYPT-NTKTFEGKITGIIGHKGEVGLDILEVL 170 Query: 166 ARHNLEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKAL 217 + +E E + RED TID ++D+DDA+ K L Sbjct: 171 CAMKIPQEFSSETLAEAEAFSEKLTDSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKL 230 Query: 218 PDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANE 277 + +L V IAD + ++ EGS LD+ A RA + Y+ +PMLP +LS++LCSL + Sbjct: 231 SNWHFELGVHIADVSHYVTEGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQ 290 Query: 278 VRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAI---- 333 R ++C M + G I + + + I++ ++ Y+ V+ + + E+ Sbjct: 291 ERLTMSCLMEIDDKGKIV-SYKISPSVIKTTYRMTYNNVNKMIHQGQEGHREALENFFKI 349 Query: 334 AEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAM 393 + +++ ++ + R + ++ D + + IL EKG ++IV R A R++E M Sbjct: 350 TDSIKVAVELHEILETMRKDRGMIEFDESEAKIILDEKGHPIEIVKRDRDTAERMIESFM 409 Query: 394 IAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR 453 + AN A + K +Y VH + L G ++++ ++ F Sbjct: 410 LMANETVALDFQKKKLPSLYRVHDNPKEKSFAKLMEAAANAGFSLNSDSHQAINFFADEI 469 Query: 454 RELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 + L ++R S A S + HFGL Y +TSPIR+Y D+I HRLL Sbjct: 470 K--GTSSEKALTYQLRHTMSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLLHL 527 Query: 514 VIKGETATRPQD------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 + + EI ++ + ER + A ++ ++ G + Sbjct: 528 YPSDHSNHTKDEWKERLPEIASHSSDMEHRAVVTERIIDAMKKAEYMSERIGE--VYTGT 585 Query: 568 IVDISRGGMRVRLVDNGAIAFIPAPFLHA-VRDELVCSQENGTV-QIKGETVYKVTDVID 625 I + + G+ V L DN I P LH +EL +E K ETVY++ I Sbjct: 586 ITGLQKFGIFVAL-DNTVEGLIRVPNLHTGTTEELEFDEEASIFKGKKSETVYQIGQEIK 644 Query: 626 VTIAEVRMETRSIIARPVA 644 + + ++ +A Sbjct: 645 IRVIAANKRKGTVDFEQIA 663 >UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIL7_EGGLE Length = 701 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 165/688 (23%), Positives = 270/688 (39%), Gaps = 78/688 (11%) Query: 24 GVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIH-----------------S 66 GV+ GFGF++ A+ +F+P +M GD + Sbjct: 18 GVLSVRGGGFGFVQT-AEGEFFVPESKMAGAFDGDLVEVAPLPVQSGRKKQPHERKADLR 76 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 E+ +A +V+ VG+ + +VP+ + I R + ++G Sbjct: 77 AGEKPAARVLRVVDRAHDTLVGRYEVAEPFGVVVPEDANIPYDIF--TMRADRPDIEDGS 134 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEG 186 + P + + + + + DD V +ARH LE +G +E Sbjct: 135 LVRVRITTFPSRNT-AATGVIEEVLGLADDEHAAVDVVIARHKLETVFSEGALSEARSAV 193 Query: 187 LVR--------EDLTALDFVTIDSASTEDMDDALFAKA-----------------LPDDK 221 L DL TID A D DDA+ + L + Sbjct: 194 LDEDGALASGYRDLRERFTFTIDPADARDFDDAVSLEPVSTCGVGTGIRVVDERGLGVAR 253 Query: 222 LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPV 281 +L V IAD ++ S LD A+ RA + YL IPMLP ELS DLCSL+ +EVR Sbjct: 254 WRLGVHIADVAHYVPWNSSLDLDARRRATSVYLVDRVIPMLPDELSGDLCSLKPDEVRRT 313 Query: 282 LACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE-----------NTGDWQPES 330 + + L + + + A I S A+L Y++ L+ + D Sbjct: 314 MTADLYLDDRARLV-AYDLYPALIRSHARLSYEEAQALLDRCHPERSAEGAESKDLVRRD 372 Query: 331 EAIA------EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRI 384 A A +++ L+++ ++R R + D + R +L E+G I + Sbjct: 373 GACAPGDGLSDRLAALSRLAKQRFASRERAGGLDFDSVEARVVLDEEGSPTGIDLRVKTD 432 Query: 385 ANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL 444 A ++EEAMI AN A+ LRD +Y VH + AL + + D ++ Sbjct: 433 ATSLIEEAMILANETVAKHLRDAKFPSLYRVHEQPSADSLAALVPVFQDFAWFRDIDQAD 492 Query: 445 TLDG----FCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPI 499 + G ++ +P G + + + R A + H+GL AY +TSPI Sbjct: 493 FIAGDAHVVQRVLEASAERPEGELVSTLLLRSMKRAVYRPDCAAHYGLASGAYTHFTSPI 552 Query: 500 RKYGDMINHRLLKAVIKGETATRPQDE-----ITVQMAERRRLNRMAERDVGDWLYARFL 554 R+Y D++ HR+LKA+I G Q++ I ++ R+ A R+ + +L Sbjct: 553 RRYPDLVVHRMLKALIGGRPEKFDQEKSALPWIAEHSSDMERIAEKAARESQEVKLIEYL 612 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKG 614 + G F+A + ++ G VRL DN A IP L + L Q T Q G Sbjct: 613 ERFVG--QTFSATVSGVATYGAYVRL-DNTAEGLIPCKNLGSEYFALDPVQHRLTGQDTG 669 Query: 615 ETVYKVTDVIDVTIAEVRMETRSIIARP 642 Y++ + V + R + RP Sbjct: 670 -ASYRLAQRLAVVLVSADPRARRLDFRP 696 >UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=C3W9Q8_FUSMR Length = 710 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 143/653 (21%), Positives = 254/653 (38%), Gaps = 36/653 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIH---SEK 68 K L +GV F F++ + + FIP + GD + + Sbjct: 61 KYNLPETQGYIKGVFSIIRDRFAFVDTEDEG-IFIPKSGFNGALDGDTVFVRLTAGMKGD 119 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 ++ E ++ +G Q + + P H +D + Sbjct: 120 RKKEGEVVRVISRDKDIVIGIFQKNKNFGFVTPTHSFGRDIYIPSIRM---KNAENNQLV 176 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------ 182 V + +R E+ + + D + R + + P E Sbjct: 177 VVRITFWG-DNERKPEGEIVEILGNPYDTKNMIEALIIREGMSETFPPEAMAEARRIPME 235 Query: 183 --LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 E R+DL L +TID +D+DDA++ + L + +LIV+IAD + +I EGS Sbjct: 236 IGKKELEGRKDLRHLPIITIDGDDAKDLDDAVYVEKLKNGNYKLIVSIADVSHYIPEGSV 295 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD+ A R + YL +PM P+E+S+ +CSL NE + C M + G + D+ + Sbjct: 296 LDREAYKRGNSVYLVDRVLPMFPKEISNGICSLNPNEDKLTFTCEMEIDKKGKVVDS-DT 354 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 + + I++ ++ Y+ V+ + + I + V + ++ + E ++ + D Sbjct: 355 YKSVIKTAYRMTYNNVNKMIAGDEETLKTYAPIKDMVMDMLELSKIIREVKYKRGSIDFD 414 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ + +L EKG+V I + R + RI+E+ MIAAN A L +Y H D Sbjct: 415 IPEIKLVLDEKGKVEYIKSRDRGESERIIEDFMIAANETVAEKLFWLEIPSVYRTHEKPD 474 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFAEIST 479 L L + + E + F K+ + + L I A+ + Sbjct: 475 MERIKNLNETLAKFKYRIHSLEEIHPKQFQKIIEDSKERGINLLVHKMILMALKQAKYTV 534 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG----ETATRPQDEI---TVQMA 532 E HFGL Y +TSPIR+Y D+ HR+L +V+ G +T + +E+ ++ Sbjct: 535 ENYGHFGLASGYYTHFTSPIRRYADLTVHRILNSVLHGYPNKKTIIKNMEELPVTCAHIS 594 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF---I 589 + R E + ++ DK G + + A IV S + D+ F + Sbjct: 595 KTERAAMKVEDESVKIKLVEYMMDKVGEE--YDATIVGFSNKRVFFETEDH-VECFWDVV 651 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 A + D ++ T Y + D VT+ + I P Sbjct: 652 SAKHYYEFDDREYVMRDTDT-----GKFYSIGDKYKVTLVRASLSELEIEVTP 699 >UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N135_9GAMM Length = 658 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 192/652 (29%), Positives = 316/652 (48%), Gaps = 30/652 (4%) Query: 1 MFQDNPL--LAQLKQQLH--SQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMH 56 M + L L LK Q+ + EG V+ + FGF+ + +S+F+PP +M KV Sbjct: 23 MLNSDSLAQLKSLKTQIKTDQEANLQEGTVRGSAGRFGFVSNEQGESFFLPPDEMAKVFP 82 Query: 57 GDRIIAVIH-SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 GD I +K + A E+L++ + F G + +VPD L + I Sbjct: 83 GDEIRFSTKEDDKGKTQAIVEKLIKSYFKSFCGYFVKRGKAQFVVPDIHQLNNWIYIPPE 142 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + E DW E+ RHP + A++ + + + + + NL E P Sbjct: 143 --ACKDVNENDWLQCEVTRHPYPKGKP-QAKILKNLGQLSEPGFERQYAITKFNLSHEWP 199 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 D +++E+ R DL+ FVTIDS T DMDDAL+A+ D +L VA Sbjct: 200 DIISSELAILGEDRIPALSEGRVDLSDHAFVTIDSEHTRDMDDALYAEKTEDG-YRLHVA 258 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IADP+AW + LD+ A+ R + Y PG ++ MLP+ELS+ LCSL E R L C ++ Sbjct: 259 IADPSAWFGPNTSLDREARSRGNSLYFPGRSLAMLPQELSNGLCSLLEGEKRLALVCVLS 318 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 + DG + ++ EF AT+ S AKL Y+QV+++LE D + + + +L + Q Sbjct: 319 IGTDGEL-NHYEFKEATVTSHAKLSYNQVTEFLEGEKDAV--KAELQDSLLILHETTQAL 375 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + R + L+ +DR DY +G+ G++ IV R A ++VEEAM+AAN A+ L++ Sbjct: 376 HQGRIRNNLIMEDRDDYYLTVGDNGKLQSIVRTERNTAQKLVEEAMLAANKSCAQFLKE- 434 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDS 466 +G GI+ H GF + +++ + + L+G+ L R +DA+ + + Sbjct: 435 IGIGIFVDHPGFRTERIGDIKQIVQDKEIGFEG-NFAELEGYKSLIRAVDAKEFDEPIKT 493 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE 526 + RF S +E S E PH G+G E Y T+TSPIRKY D++ HR++KA + + DE Sbjct: 494 LLSRFLSRSEYSLEAKPHMGMGFECYTTFTSPIRKYSDLLIHRIIKAHLSEQKQLEINDE 553 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + + R A WL ++L DK + +F I I+ GG+ V + + G Sbjct: 554 TIALLQDALVTGRRAVNLAEHWLKLQYL-DKL-KENQFDGVISQINPGGLTVTITELGLD 611 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 FI +++ + + + + + + V + + + R + Sbjct: 612 GFIDLR-----KNKALSFNRTYLMFEGEKQTFTLDQKVKVEVKKADLVDRKL 658 >UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Atopobium RepID=C8W8A8_ATOPD Length = 670 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 164/653 (25%), Positives = 268/653 (41%), Gaps = 36/653 (5%) Query: 20 PRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKER-ESAEPEEL 78 G + + G + Y + + + MHGD + + S K + A + Sbjct: 24 TLLTGTLSLSRPGVATVSTPEGM-YALAKHGIHEAMHGDEVQVSLVSAKGKAPLANVRFV 82 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA--IPCRAARGLNHEFKEGDWAVAEMRRHP 136 + F+G A+VP ++ + H EGD VA + +P Sbjct: 83 LTRATQTFLGIYHDAGPLGAVVPLDSRIQRDFFVLPEDPSVGRHYVFEGDVVVARITEYP 142 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV----------ATEMLDEG 186 + + + + + +D + T+A + L E P A + L E Sbjct: 143 TRKS-AAVVTIERRVGSAEDLDMNVEATIASYGLATEFPIKALRQAEKISVDADKALAED 201 Query: 187 LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 R DL +T+D A +D DDA+ A+ L D +L V IAD ++ S +D A+ Sbjct: 202 ASRHDLREELCITVDPADAKDFDDAVGARKLEDGSFELWVHIADVAHYVKWDSPIDLEAR 261 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 +R + YL +PMLP +L +D+CSLR E R ++ +M LS+ G I + I Sbjct: 262 MRTCSAYLVDRVLPMLPEKLCNDVCSLRPAEDRLAMSVKMKLSSSGKILGATAM-NSVIR 320 Query: 307 SKAKLVYDQVSDWLENTGDW------QPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 S+A+L YDQV +L+ + ++ AI E + +L QI R E R V + Sbjct: 321 SRARLSYDQVDSYLQGDVSALDSAVSREDAGAIKEMIDVLNQIRALREEIREKRGSVDFE 380 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 + R +L E + + + R A ++EEAM+AAN A +L Y VH Sbjct: 381 SVETRVVLDENNKPVGVSVRERTQATGLIEEAMLAANESVAHMLSQHDLESAYRVHEQPS 440 Query: 421 PANADALAALLKTHG-LHVDAEEVLTLDGFCKLRRELD----AQPTGFLDSRIRRFQSFA 475 P + L G L D + + L+ L+ + + +++++ R Q A Sbjct: 441 PESLKLAITPLVAMGALEPDVASRIAIGDQTALQEALESVHGTRYSRVVNAQLLRAQKRA 500 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ----DEITVQM 531 HF LG +AY +TSPIR+Y D+I HR LK ++ G+TA R + +I Sbjct: 501 IYLPTNQGHFALGADAYCHFTSPIRRYPDVIVHRTLKRLLCGQTAARAELSALADICSTC 560 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 +E+ R A R A + + + G +T I R G+ + L D A + Sbjct: 561 SEQERKADAAARATQKIKLAEYYQSRLGEET--WGTIDGCERFGLFITLDDTYADGLLTV 618 Query: 592 PFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 L V QE + Y++ + V I+ V + I V Sbjct: 619 RDLGHEW--YVYDQETLALIGESTGKTYRIGGRVRVKISGVNVARGQIDLALV 669 >UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFY5_9PLAN Length = 758 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 147/673 (21%), Positives = 258/673 (38%), Gaps = 48/673 (7%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEV----DA-------QKSYFIPPP 49 + D+ L+ +K++ G +K T G G+L D +I Sbjct: 53 LISDSGLIRPVKKE-----GWIAGTIKKTNSGAGYLIPHHKPDDIAHDQRHAGDLYISER 107 Query: 50 QMKKVMHGDRIIAV-IHSEKERES--AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLL 106 + GD + A I+ ++ E++E T FVG + D + Sbjct: 108 DLGDAQTGDEVYATAINRQRSGGQICGRVVEIIERASTTFVGTYFETQGEGYVHVDGKIF 167 Query: 107 KDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLA 166 P + D V ++ P K + + + V + Sbjct: 168 NS--PIHVGDPGAKGVRSEDKVVIDILHFPSKNYLG-QGVIAKVLGPHGKAGVDLLSIIY 224 Query: 167 RHNLEKEAPDGVATEMLDEGLV--------REDLTALDFVTIDSASTEDMDDALFAKALP 218 + + P+ V E ++ + R DLT VTID A D DDA+ Sbjct: 225 EFGIPLDFPEEVLAEAREQASLFDETKLGNRRDLTRETIVTIDPADARDFDDAISLTRDE 284 Query: 219 DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEV 278 L V IAD ++ EGS LD+ AK R + YLPG IPMLP +S+ L SL+ +V Sbjct: 285 KGHWLLGVHIADVAHFVKEGSLLDREAKHRGTSVYLPGRVIPMLPEIISNGLASLQEGQV 344 Query: 279 RPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQV 337 R + + + +G I + EF I+ K + Y+QV ++ D S + E + Sbjct: 345 RFTKSAFIEFTPEG-IPVHTEFANTAIKVKQRFAYEQVLPIVQERDDEGKHVSAEVRELL 403 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN 397 + + Q+ R + + + + +K V V +++I+EE M+AAN Sbjct: 404 KNMYQLAMMLRGRRFSAGALELHLAEVKLTFDDKHRVTGAVEREHDESHQIIEEFMLAAN 463 Query: 398 ICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD 457 I A D+ + VH + A A G ++ +V + KL E+ Sbjct: 464 ISIAEAFHDRGLRFLRRVHPSPEMPRQLAFAEFANALGFTLN--KVQSRKDLQKLINEVH 521 Query: 458 AQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516 P ++ + R AE + + H+ L ++ Y +TSPIR+Y D+ HR++ +++ Sbjct: 522 GTPVEQAINYALLRSLKQAEYTDKELGHYALAVDHYCHFTSPIRRYPDLTIHRMIDEILE 581 Query: 517 -----GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 + + ++ +++ R R AER++ ++ D I + Sbjct: 582 RPDKGKGQSPQGLRQLGHELSLRERRAESAERELTKVKLLTWMIDN--NIRTLETMITGV 639 Query: 572 SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETV---YKVTDVIDVTI 628 GM R D + L QE I GE Y+V D++ V + Sbjct: 640 ETFGMFCRGTDVPVEGLLHISRLG---KHDYFHQEVPKFSIVGERTGQEYRVGDLLTVEV 696 Query: 629 AEVRMETRSIIAR 641 ++ ++ R + R Sbjct: 697 EKIDLDRRELDFR 709 >UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ribonuclease II) n=2 Tax=Mycoplasma RepID=A5IXZ7_MYCAP Length = 729 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 147/650 (22%), Positives = 281/650 (43%), Gaps = 39/650 (6%) Query: 18 QTPRAEGVVK-ATEKGFGFLEVDA------QKSYFIPPPQMKKVMHGDRIIA----VIHS 66 + +G + A+E F++V+ + SYF+ ++ D + A I Sbjct: 63 KINTIQGPIHFASEGKCAFVDVEELSKNGTKSSYFVSSNNFNTALNNDIVEADVFEPISP 122 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + R A+ ++++E +G + N + P P+ K+ + + E + D Sbjct: 123 DNNRTFAKVKKIIERRCKTLIGVLDNVNGFVTFKPIEPIYKN--TSFRIKNIASEARVLD 180 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--- 183 VAE+ + +R+ + + IT +D N+ +E P V + Sbjct: 181 VVVAEIINY---ENRNKEINIIKRITDVNDPMAYVKSLEEARNVPREFPAEVNEYIQKFI 237 Query: 184 ------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 ++ +R DL VTID +ST+D DDA+ + ++ +L V IAD ++ E Sbjct: 238 PENIKNEDLSMRTDLRNDLVVTIDGSSTKDFDDAISVVKIDENTYELGVHIADVAYYVKE 297 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 + LD A R + YL +PMLP +LS+ +CSL NE R ++C ++ G + Sbjct: 298 NTPLDDEALKRGTSIYLLNEVVPMLPFKLSNGICSLNPNEERLTISCITKINKLGQSIE- 356 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 + + I+SK +L Y++V++++ + D+ E + + + ++ ++ Q E+++ + Sbjct: 357 TKIVPSVIKSKYRLTYERVNEFINESKDF--EDKELNKMLKNAYELSQIIREFKNKQGYI 414 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + + L G VLDI E + +++E+ M+ AN A+ + + +Y +H Sbjct: 415 DFEIQEPHIELDSDGRVLDISVEKTGESEKMIEDFMVRANEEVAKFITNSKLPMMYRIHE 474 Query: 418 GFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFA 475 + +LK+ ++V + +T F K+ ++++Q FL R A Sbjct: 475 VPSEEKIEYFLEVLKSLKINVSLNRKHITPLTFQKIINQINSQRNDEFLKMLFLRTMQKA 534 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD------EITV 529 S + HFGL E Y +TSPIR+Y D+I HR+L + + + + +I Sbjct: 535 VYSPDNIGHFGLASECYCHFTSPIRRYPDVIVHRVLWDFVFKKQLNKVDEFAANLQKIAA 594 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + ERDV D +A + K K ++ F ++ I++ GM ++ DN A + Sbjct: 595 MNSASEENAVQLERDVNDLKFAEYFKSKINSE--FEGQVFGITKFGMFIQF-DNKTDAMV 651 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 + E + + YK+ + V I T I Sbjct: 652 HISNIGDGDFEANEQMTKLYSKNDPKKAYKLGQTVRVVITNADETTGKID 701 >UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiaceae RepID=Q6MCC7_PARUW Length = 775 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 148/636 (23%), Positives = 254/636 (39%), Gaps = 33/636 (5%) Query: 16 HSQTPRAEGVVKATEKGFGFLEV----DAQKSYFIPPPQMKKVMHGDRIIAVIHSE---K 68 SQ G++K +GFGF++V + ++ FIP K + GD + +++ E Sbjct: 90 KSQADVVTGILKMHPRGFGFVQVTIPKNFEQDIFIPKHLTKNGVDGDVVEVILNQEVISD 149 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 + + ++ T G ++ + + PLL H+ + GD Sbjct: 150 KGPEGKIVAILSRGRTHMAGIIRQLDKDRMFIAHVPLLGTQQRVVVHPTEEHQLQIGDRI 209 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------ 182 V E+ K + + Y+ D + + L + E Sbjct: 210 VMEVIDWGSKETETI-CRFSHYLGHISDPSCDVYAAIEEFELRSDFQTAAIEEANNLGKS 268 Query: 183 --LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 + REDL L +TID + +D DDAL + L V IAD + ++ G+ Sbjct: 269 VSKKDIQNREDLRELISLTIDPDTAKDFDDALSLTRDAEGIYNLAVHIADVSHYVQPGTA 328 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD+ AK R + Y PG+ +PMLP LS++LCSLR N R ++ M + + G + D F Sbjct: 329 LDEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPNVNRLAVSVLMRIDSSGNLLD-YRF 387 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 + I+S + Y + L+ ++ + L+ ++C+ + R+ + Sbjct: 388 TRSVIKSAKRFTYKEAKKVLDG-----QKNSPYKPHLELMVELCRLLKQKRYERGSIEFS 442 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ ++ EKG+ I +++VEE M+ AN A L K Y +H Sbjct: 443 LPELVILVDEKGKPYSTEYITYDITHQMVEEFMLKANEIVAWDLSQKGKNLTYRIHDEPS 502 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKL-RRELDAQPTGFLDSRIRRFQSFAEIST 479 N + L G + ++ T KL + + + +L S R A S Sbjct: 503 EENLRDFSTLAAAFGFKLP--DLPTPQDLQKLFEKAAETAYSNYLASSYIRRMRLAAYSA 560 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNR 539 E H+GL L Y +TSPIR+Y D++ HR+L EI +E+ R++ Sbjct: 561 ENIGHYGLSLTHYCHFTSPIRRYVDLVVHRIL---FGESDRFDDLQEIANYCSEQERISA 617 Query: 540 MAERDVGDWLYARFLKDK--AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 AE V R L+++ + + A I + G+ + D FI L Sbjct: 618 KAENSVVILKKLRLLEERHQKAPEHEYQAIITRVKNFGIYFEIFDLLLEGFIHISDLG-- 675 Query: 598 RDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVR 632 D V +E + K Y D + V + ++ Sbjct: 676 EDYFVYEEEKMLLRGAKHGARYSPGDNLVVMLEKID 711 >UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVJ8_9CLOT Length = 699 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 151/635 (23%), Positives = 249/635 (39%), Gaps = 34/635 (5%) Query: 30 EKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAV-IHSEKERESAEPEELVEPFLTRFV 87 KGF F + + ++ K+ M GD ++ I + S E+++ F Sbjct: 75 SKGFSFARPLEGGEDIYVAQEDRKRAMLGDTVLLRDIRDSGKGLSGRVEKIIRKGNRLFT 134 Query: 88 GKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAEL 147 G V + L + D + +P L+ K GD A + + + + A + Sbjct: 135 GTVVRRGRDLELELD-GAFRYQVPVEKKGSLHG--KNGDKVQA-ILSYGPRSGK-LTARI 189 Query: 148 TQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD---------EGLVREDLTALDFV 198 + V + + + K+ E E R DL Sbjct: 190 LKVYGKAASAKVCADAIIDANGIPKKFKKETLREAEKLSREPITPAERKKRADLREQLIF 249 Query: 199 TIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFN 258 TID A +D+DDA+ + +L V IAD + ++ EGS +D+ AK R + Y Sbjct: 250 TIDGADAKDLDDAISVEK-DGAGWKLGVHIADVSHYVKEGSLVDEEAKQRGTSVYFADRV 308 Query: 259 IPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSD 318 IPMLP LS+ CSL A E + +C MTL G + F + I SK + VYD+V+ Sbjct: 309 IPMLPEALSNGCCSLNAGEEKLAFSCFMTLDRKGNLR-GYRFQKSVICSKVRGVYDEVNQ 367 Query: 319 WLEN--TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLD 376 LE + + + + ++ ++ Q + + + RF L G +D Sbjct: 368 VLEGCAAERLKEKYQPVLASLQAGQELAQLLEAKGRRRGTMDFESSEARFFLDRNGTCVD 427 Query: 377 IVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGL 436 I+ + ++ +++E+ MI AN AA + +Y VH DP + L L GL Sbjct: 428 ILPRSQGLSEKMIEQFMILANQAAALYAKCLEIPFVYRVHEDPDPERLNTLQQLAAGLGL 487 Query: 437 HVDA-EEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYAT 494 +E + L R+ + P ++ ++ R + A +P HFGL L+ Y Sbjct: 488 RARRIQEGVRSADLSDLLRQAEGTPAQNIINHQVLRTLAKARYDNKPLGHFGLNLDDYCH 547 Query: 495 WTSPIRKYGDMINHRLLKAVIKGETATRPQD-------EITVQMAERRRLNRMAERDVGD 547 +TSPIR+Y D HR+L V +G T R Q E V + + AER Sbjct: 548 FTSPIRRYPDTAIHRILTGVAEGITVDRLQKKYQDFSREAAVLSSACELRAQRAERQAEK 607 Query: 548 WLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN 607 A +++ G F + + G+ V+LV N F+ E Sbjct: 608 CYMAEYMRRHLGE--TFDGIVSGATARGIFVQLV-NSVEGFVGVEDFPDC--EFQFDGLL 662 Query: 608 GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 ++ V D + V +A + T I P Sbjct: 663 THTDVRSGRRLTVGDPMKVQVAAADVATGRIDFTP 697 >UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIE9_CELJU Length = 664 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 209/660 (31%), Positives = 313/660 (47%), Gaps = 26/660 (3%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M ++ L LA LK L +Q A+G ++ T K FGF+ +D + F+ P Q+ +V+ D Sbjct: 1 MLNNDALQQLASLKSSLVAQKDIAQGTIRTTTKRFGFILLDDGREAFLDPEQILRVLPED 60 Query: 59 RIIAVIHSE-KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 R A I + K + A+ +L+ L FVG+ K + PD + Sbjct: 61 RAEAEITTNAKGQYEAKLTKLLHSNLQEFVGRYVSKGTNFFVEPDLVHFNRWLFVPPQ-- 118 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 EGD ++ RHP D + + + D+ + +AR L E P Sbjct: 119 DRKGLTEGDLVHCQVARHPFHCDGKAQVHILKRLGNVDEPGIESRYAIARFQLPCEWPPA 178 Query: 178 VATEMLDEGLVR-------EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 + EDLT L FVTIDS ST DMDDA+ +A +L AIAD Sbjct: 179 AQNQASSIHWSPLVFENNEEDLTQLPFVTIDSESTRDMDDAVCIQATEHG-WELFSAIAD 237 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 PT I S L++AA+ RA T+Y+ G + MLP +LS D SL A + RP L CR+ + Sbjct: 238 PTKHIDFDSPLEQAARERASTHYILGNTLTMLPVDLSQDTYSLVAEQKRPALVCRIHIRN 297 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 DG I ++ F A I S+ KL Y V D+L + E + + +L R ++ Sbjct: 298 DGHI-ESFAFSEAVIRSRQKLSYQGVYDFLTTAAETNLSDELRTQ-LTMLRDFALARSQY 355 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R H L+ +++PDY+FIL E+ ++ + R IA+RIVEEAM+A N+CA + G+ Sbjct: 356 RQQHNLLMEEKPDYQFILNEQKKIERVEKRDRTIAHRIVEEAMLATNLCAGELFSQHPGY 415 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-----TGFLD 465 GI++ H+GF P + AL++ + ++ L F L REL P L Sbjct: 416 GIFSGHIGFRPERVNDAVALIQEDRPDLSPGDLSQLKDFLNLFRELRQNPGQHPANAALH 475 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD 525 S ++R +S EP PHFGLG AYA TSPIR+Y D NH +K +++GE + Sbjct: 476 SLLQRQLQAGALSQEPVPHFGLGFNAYAMVTSPIRRYNDFFNHLGIKRLLRGEPPLALDN 535 Query: 526 --EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 E ++ + L R A R WL +++ G+ I ++ G+ VRL D Sbjct: 536 LVEFVERLQHKLNLGRQACRFTETWLACQYMNQHIGS--VHTGNIALVNSTGIGVRLDDW 593 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 G FIP + ++ + G T YK+ +V+ V I EV + R + V Sbjct: 594 GMEGFIPLVP-RDSDIKAQFDSRRLSLNVNGNT-YKLDEVVQVVIDEVDVSKRRVALSLV 651 >UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6A7_MYCS5 Length = 735 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 156/657 (23%), Positives = 275/657 (41%), Gaps = 50/657 (7%) Query: 21 RAEGVVK-ATEKGFGFLEVDAQ----KSYFIPPPQMKKVMHGDRIIAVIHSEKERES--- 72 + G++K A++K F FLE + + +S F+ + ++ D +IA I+ + ++ Sbjct: 66 KQSGIIKVASKKQFAFLEFENEAQEKESVFVKFQDLNSALNNDEVIASIYKDHNEKNPTR 125 Query: 73 ---AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 A +E+V+ + +G ++ + + P D + L+ + K D + Sbjct: 126 QLLAVVDEIVQRNNQKIIGFIKKDKNTIFFAPADGCF-DKVKFELLN-LSSKVKINDCVL 183 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------- 182 E++++ E+ + IT D V L N++ E E Sbjct: 184 CEIKKY---DKNLVSLEIKKVITNTSDPNVFVKAYLESTNIDLEFSAETLAESKLIPQEV 240 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + E R++LT+ VTID ST+D DDA+ K L + L V IAD ++ E + Sbjct: 241 DLNIKEKFQRKNLTSELIVTIDGESTKDFDDAINVKKLENGNFLLSVHIADVAHYVKEKT 300 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD A R + Y+ IPMLP ELS+ +CS+ N R L+C + + G N + Sbjct: 301 NLDSEALKRGTSIYIANGVIPMLPSELSNGICSINPNVDRFALSCDIEIDQHGNNV-NYK 359 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL-------AQICQRRGEWRH 352 + + I SK +L Y QV + + ++ + + V+ L ++ +++ Sbjct: 360 IYKSVINSKFRLTYKQVQAFFDKDNNFLSLEQKKSSYVKELETMLTNAYELSLILHKYKE 419 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 V + P+ + L E G V +I R + ++E+ M+ N A+ L D + Sbjct: 420 AQGYVDFEIPEPKIFLNEDGTVKEIKIHKRVYSEILIEDFMVRTNEVVAKYLSDLKMPVL 479 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLT--LDGFCKL-RRELDAQPTGFLDSRIR 469 Y +H +L L G+++ +T + F K + + + F++ Sbjct: 480 YRIHENPSEEKLQSLKTNLTALGINIKNINSITSSANDFSKFVYQTRNQRNDYFINLLFL 539 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR------- 522 R A S HFGL E Y +TSPIR+Y D++ HR+L ++G+++ Sbjct: 540 RTMQKAIYSLNNIGHFGLASEFYCHFTSPIRRYPDLLVHRILTMHLEGKSSQEILNHFDS 599 Query: 523 PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 D + + ER V D +A FLK + G +F A+IV + G+ V + Sbjct: 600 KLDSYAQLNSNSEQKAIEIERKVNDLKFAEFLKFQTG--QKFKAQIVSVLNFGIFVEF-E 656 Query: 583 NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 G I D + E TV YK+ + +DV I + I Sbjct: 657 FGGSGLIHKSNFF---DGSYEANEMLTVFASETKSYKIGEYVDVVIIATDLLEGKID 710 >UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQS9_LAWIP Length = 813 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 157/673 (23%), Positives = 256/673 (38%), Gaps = 51/673 (7%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK------SYFIPPPQMKKVMHGDRIIAVIH 65 K + S + G G F+ VD Q FI P GD++ +++ Sbjct: 98 KWAIASPMQKVIGTFVVQRSGAAFVIVDQQNTQKPYSDIFIRPELQNGAWDGDKVQVIVY 157 Query: 66 SEKERE--SAEPEELVEPFLTRFVGKVQGKNDRLAIV--PDHPLLKDAIPCRAARGLNHE 121 K + + +++E + +V K+++ +V P L ++ Sbjct: 158 PTKHGKNFEGQVVQILERPRKEVIVRVSQKHEKGGVVCYPVDSKLNVLFIVDTSKLPEKP 217 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 + + P + +D V V +N+ E P V E Sbjct: 218 IENELLV---IIPTPNTNGELLMGIAQYSLGVEEDVRVQEKVVKLNYNIPCEFPLHVLKE 274 Query: 182 MLDEG--------------------------LVREDLTALDFVTIDSASTEDMDDALFAK 215 +R+DL +DFVTID +D DDA+ Sbjct: 275 ENVAKDLFIKSKAVFYNVPYQKYDDISQCSTAIRQDLRVIDFVTIDGEDAKDFDDAICVY 334 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 D L VAIAD + ++ GS LD A R + Y P MLP LS+D CSL+ Sbjct: 335 PT-DIGWDLWVAIADVSHFVRAGSLLDSEALARGNSYYFPCSVESMLPEFLSNDFCSLKP 393 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTG-DWQPESEAIA 334 E R V+A +++ DG ++ I FF I S+A+L Y+QV LE P Sbjct: 394 KEERLVMATKISFDNDGKTKNVI-FFPGVISSRARLTYEQVHLALEVKEISRLPGGIDTL 452 Query: 335 EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE-KGEVLDIVAEPRRIANRIVEEAM 393 + +++ + R + D P+ RF++ + V+ ++ + R +++++EE M Sbjct: 453 SMLNNASELAKVLQANRIKRGSLEFDLPETRFLINKATRRVIGVIRQERFFSHQLIEELM 512 Query: 394 IAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR 453 +A N A L DK +Y +H D + L +L T L + Sbjct: 513 LAVNEAVATFLHDKQIPFLYRIHPEPDIERLEKLFRILATTDLACQLSGSPDAKKLGGIL 572 Query: 454 RELDAQPTGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK 512 E + P FL SR+ R A+ S EPG HFGL Y +TSPIR+Y D++ HR +K Sbjct: 573 EEAENTPQTFLISRMVLRSMMQAKYSPEPGEHFGLASPLYCHFTSPIRRYADLLVHRAVK 632 Query: 513 AVIKGETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 + P + I Q R+ + AER++ L L+ G F A + Sbjct: 633 FALGDTQKHIPFGQQLFSIAEQCNSHERVAQEAEREITKRLSCLVLQGDEGK--IFEAIV 690 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 I+ V L+ + L E ++ G+ Y + + V + Sbjct: 691 TGITDFAFFVELISMPIEGMVRLASLKDDWFEYNQDRQELLGVRTGKRFY-LGQRLTVKV 749 Query: 629 AEVRMETRSIIAR 641 + V + I Sbjct: 750 SSVNILRLEIEFE 762 >UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4W7_SLAHD Length = 670 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 167/670 (24%), Positives = 272/670 (40%), Gaps = 56/670 (8%) Query: 18 QTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERES----- 72 R GV+ T G+ F++ A+ +FIP ++ GD + S ER S Sbjct: 2 NRARPRGVLNMTSAGYAFVQT-AEGEFFIPASKVHDAFDGDVVEVSRLSSSERGSYAQAG 60 Query: 73 -----AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 A +V VG+ + +VP+ P +K I R + GD Sbjct: 61 PDRPAARVVRVVLRAHESIVGRYEVAEPFGIVVPEDPRIKHDIF--TLRADAPHVQHGDI 118 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA-------- 179 M +P + + + + D + + +ARH LE + V Sbjct: 119 VRVRMTVYPNR-REPAQGVVEEVLGHVGDAGMDVELIVARHKLETKFSPKVLEDVAHAAV 177 Query: 180 --TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 E L G R D+ TID A +D DDAL + L+L V IAD + ++ Sbjct: 178 GEAEALSSGDYR-DIRNRVVFTIDPADAKDFDDALSFDKV-GGYLRLGVHIADVSHYVPW 235 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S D A+ R+ + YL +PMLP LS+D+CSLR E R + + L+ ++ + Sbjct: 236 NSPTDLEARRRSTSVYLVDRVVPMLPEVLSNDVCSLRPREPRRAMTVDLYLTETFSV-HH 294 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTG------------DWQPESEAIAEQVRLLAQICQ 345 ++ + + IES A+L YD V + + D + E++ ++ L ++ Sbjct: 295 VDAYPSIIESCARLDYDTVQECFDRVAGGERPAAVSMLQDVCKDPESVLVRLLGLKRVSV 354 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 E R + D + + L ++G + + A +VEEAMIAAN AR+LR Sbjct: 355 GLHERRLKRGGLDFDGVEAKVRLDDEGRPVGVDIRKTTQATSLVEEAMIAANEAVARLLR 414 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAE----EVLTLDGFCKLRRELDAQ-P 460 D IY VH + AL +L+ G D K+ + + Sbjct: 415 DGAIPSIYRVHEPPATGDLSALIPILQEFGYDSDVSMSRFAAGDPFAIQKVIAKAKGRLE 474 Query: 461 TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA 520 + + + R + A PHFGLG EAY +TSPIR+Y D++ HR+LK + G T Sbjct: 475 EPLVSTLVVRAMTQARYVDACEPHFGLGSEAYTHFTSPIRRYPDLVVHRMLKVKLFGRTE 534 Query: 521 TRPQDE-----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 T +E I +E R A R+ + L++ G + F + ++ G Sbjct: 535 TTSAEEAALATIAAHASEMERKAETAARESQELKLFELLEEHIGEE--FDGLVSGVTASG 592 Query: 576 MRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRME 634 VRL D + F+ L ++ + E T+ VY++ + + + +V Sbjct: 593 FFVRLDDT-SEGFV---SLRRAQEYFILDPERYTLTGSDSGVVYRLGARVRIRVRDVYPF 648 Query: 635 TRSIIARPVA 644 R VA Sbjct: 649 ERKADFDLVA 658 >UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured marine microorganism HF4000_APKG3D20 RepID=B3T7C1_9ZZZZ Length = 671 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 146/673 (21%), Positives = 252/673 (37%), Gaps = 56/673 (8%) Query: 19 TPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSEK--------- 68 GV+ G F+E+ + QKS+ + +HGD + S + Sbjct: 3 KSNTRGVLVFRRNGNAFVEIRNRQKSFQLAKAATACALHGDEVEIRQVSPRKRKPGQRKA 62 Query: 69 -ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 R S E ++V L F+G Q + I P+ L + +G+ Sbjct: 63 TGRRSYEVVKVVSRSLDHFLGFAQRQGKGWMIRPEDRRLHTNFALSGE--MPPNLVDGEK 120 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 + + + + + D LA++ L V +E+ Sbjct: 121 VLVQFVDWGQPQSLP-RGRILRVLGPAGDPMTDHIGILAKYKLPNRFSRKVESELNTIPR 179 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + R+DL +T+D D DDAL L +++ V IAD +A++A S Sbjct: 180 QVRQQDLKGRKDLRDRFTLTVDPIDARDFDDALSLHPLKGGNVEVGVHIADVSAYVAPES 239 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 +DK A+ R + YL G +PMLP++LS+ +CSL E R V + T G + + Sbjct: 240 AIDKEARRRGNSTYLVGEVVPMLPKQLSNGICSLVEAEDRLVKSVLFTFDPKGNVLGHH- 298 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQ----------------------- 336 A I S +L Y+Q ++ + + S E Sbjct: 299 VTEAVIRSDKRLTYEQAKLLMDESDLSKVRSAKPPESRYSGKPGTTLSKLPDGKLLKLQS 358 Query: 337 -VRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 +R L E R H + + + ++ ++G ++ +++++EE M+ Sbjct: 359 TLRNLWSFADELREQRLRHGALDLGGKEVKILVDDRGNPERMMRLVNDESHQLIEEFMLL 418 Query: 396 ANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE 455 AN A+ LR I+ VH DP D L + G + ++ L + Sbjct: 419 ANETVAKELRRLRRPAIHRVHDDPDPEKLDELRSFAAIFG--ISCGDLNHRKAMTALTSK 476 Query: 456 LDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 + P + L ++ R A P H+GL Y +TSPIR+Y D++ HR+++A Sbjct: 477 IKNHPISQVLRIKLLRSLRKACYRVSPDGHYGLAKSDYLHFTSPIRRYADLVVHRIIEAQ 536 Query: 515 IKGETATR----PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTR--FAAEI 568 ++G T ++I ++E R + AER+ + + + A I Sbjct: 537 LRGSRTTAHSRGDLEKIAFHVSETERNSVDAERESVKTKLVAYYARELKENNVRPHEAII 596 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 I R G V L D A F+ L V + E + K+ I V I Sbjct: 597 TQIGRRGFFVELTDTLAQGFVALRALPRHEGYRVSANETAITARNPKKTLKIGQRIKVMI 656 Query: 629 AEVRMETRSIIAR 641 V + + + R Sbjct: 657 DRVDQDEKLLDFR 669 >UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECD1_9CLOT Length = 716 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 145/635 (22%), Positives = 266/635 (41%), Gaps = 35/635 (5%) Query: 29 TEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIAVIHSE-KERESAEPEELVEPFLTRF 86 + F F + + ++ FIP + + GD ++ ++ + E + + + + F Sbjct: 76 NSRTFCFAQRASDEARIFIPGKYSRGAILGDLVLVRPQAQLGDSEEGQVFSIYKNGPSAF 135 Query: 87 VGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAE 146 G + +++ + PD+ L KD IP R+ + K GD +A++ + E Sbjct: 136 SGVLMQEDEDYFVQPDN-LSKDRIPVRSKS--IGDAKPGDKVLAKVVLRGSRHSEHI-CE 191 Query: 147 LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD---------EGLVREDLTALDF 197 LT + L H + +E P V + E + R DLT L Sbjct: 192 LTGAYGSAETAAACARAVLDAHGITEEFPQEVLEQARSISEQGIRDSERVHRLDLTDLPI 251 Query: 198 VTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGF 257 TIDSA ++D+DDA+ + +D + V IAD + ++ + LD+ A R + Y Sbjct: 252 FTIDSADSKDLDDAISIEK-AEDCYHVGVHIADVSHYVGYRTPLDQEAFRRGTSIYYANR 310 Query: 258 NIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVS 317 IPMLP+ELS+ +CSL E R + M +S DG + D F I S+ K VY +V+ Sbjct: 311 VIPMLPKELSNGICSLNPQEDRLAFSALMNVSLDGELMD-FTFRKTVIRSRVKGVYKEVN 369 Query: 318 DWLEN--TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVL 375 LE D + + + ++L+ ++ QR + + + + + I+ E + Sbjct: 370 ALLEGGADEDLKQKYSEVLPSLQLMHELYQRLFQNKVKRGAPQLETSESKIIVDENDVAV 429 Query: 376 DIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHG 435 DI + ++ ++EE M+ AN AA + + + +Y +H P +L +L+ G Sbjct: 430 DIQPRVQGLSEGMIEEFMLLANEAAATLAKREKLPFVYRIHEHPSPEKLSSLKEILERLG 489 Query: 436 LHVDAEEVLTLDGFCK--LRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYA 493 L + G L D+ +++++ R + A+ P H+GL LE YA Sbjct: 490 LPSLRVDKKVKPGVLAGILTSSRDSGLFPIINTQVLRSMAKAQYDERPVGHYGLALENYA 549 Query: 494 TWTSPIRKYGDMINHRLLKAVIK--------GETATRPQDEITVQMAERRRLNRMAERDV 545 +TSPIR+Y D+ HR+L + + + + + Q E ER+ Sbjct: 550 HFTSPIRRYPDLTIHRILTEYVVLHETPDKIHKRYDKFVAQASKQSTETEITAMQIEREC 609 Query: 546 GDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ 605 D A +++ G + F I + G+ + L +N ++ L+ + Sbjct: 610 NDRYKAEYIRQHIGEE--FDGIITSVLGRGLYIEL-ENTVEGYVKVEDLNGI---YEHDG 663 Query: 606 ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 + Y+V D + + V + I Sbjct: 664 FTELKNHQTGKRYRVGDKVRIQCVAVDVNAGRIDF 698 >UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacteria RepID=A8I2E1_AZOC5 Length = 814 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 166/613 (27%), Positives = 260/613 (42%), Gaps = 40/613 (6%) Query: 48 PPQMKKVMHG--DRIIAVIHSEKE----RESAEPEELVEPFLTRFVGKVQG----KNDRL 97 P +++ G DRI+ + + +++E + +G + + Sbjct: 157 PDKLRGPAPGLSDRIVVRVEPNDPAPGIGYTGRVIKVLEKARKQQLGVFRKAPPGSSGGG 216 Query: 98 AIVP-DHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDD 156 I+P D L + G + ++GD EM + G A + + + Sbjct: 217 RIIPIDKKNLGRELQVPP--GAENGAEDGDLVSVEMMHQRVFGQ--PTARVKERLGSLAT 272 Query: 157 HFVPWWVTLARHNLEKEAPDGVATEMLDE----GLVREDLTALDFVTIDSASTEDMDDAL 212 V + H + P V E RED L VTID +D DDA+ Sbjct: 273 EKAISLVAIHAHGIPNAFPAKVIAEAEAARPATAKGREDWRKLPLVTIDPPDAKDHDDAV 332 Query: 213 FAKALPD----DKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSD 268 A D + VAIAD A++ GS LD+ A +R + Y P +PMLP +S+ Sbjct: 333 HAVPDDDPDNAGGFIVTVAIADVAAYVRPGSALDREALLRGNSVYFPDRVVPMLPERISN 392 Query: 269 DLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQP 328 DLCSLR E R LA RM + DG + + F + S AKL Y+Q ++ D Sbjct: 393 DLCSLRPQEDRAALAVRMVIGKDGR-KRSHSFHRILMRSAAKLAYEQAQAAIDGVSDDTT 451 Query: 329 ESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRI 388 + + +R L + R + D P+ + +L E G V ++ PR A+R+ Sbjct: 452 -APLLESVLRPLYAAYACVKQARDARQPLELDLPERKILLKEDGTVDRVIVPPRLDAHRL 510 Query: 389 VEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDG 448 +EE MI AN+ AA L K I+ VH G A AL L T + + + + Sbjct: 511 IEEFMILANVAAAETLEQKKVPLIFRVHDGPTLAKLSALREFLATLDISLPKTDQVRPSH 570 Query: 449 FCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMIN 507 F ++ +D + ++ I R QS AE S+E HFGL L YA +TSPIR+Y D++ Sbjct: 571 FNRILGMVDGGDSAPLVNQVILRSQSQAEYSSENYGHFGLNLRRYAHFTSPIRRYADLVV 630 Query: 508 HRLLKAVIKGETATRPQ-------DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT 560 HR L + + P+ EI+ ++ R AER+ D L A L ++ G Sbjct: 631 HRGLLRTLGADADALPETATVETLAEISADISATERRAMAAERETVDRLIAHHLAEQIG- 689 Query: 561 DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VY 618 F I +R G+ V L + GA F+PA L + E + T ++ Sbjct: 690 -AVFQGRITGATRAGLFVALDETGADGFVPAASLG---QDYYRFDETRQALVGDRTGEMH 745 Query: 619 KVTDVIDVTIAEV 631 ++ D ++V + E Sbjct: 746 RIGDRVEVKLVEA 758 >UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YQJ4_AZOPC Length = 586 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 123/504 (24%), Positives = 211/504 (41%), Gaps = 27/504 (5%) Query: 161 WWVTLARHNLEKEAPDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDAL 212 +NL + P+ E RED TID + +D DDAL Sbjct: 87 IPSIQDEYNLPCKYPEEAEKAAQKIPNHITLTEISNREDFRETLTFTIDPQNAKDFDDAL 146 Query: 213 FAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCS 272 K L ++ ++ V IAD T +I S +DK A R + YL IPMLP L +++CS Sbjct: 147 SIKKLSNNFYEIGVHIADVTHYIKPDSSIDKEALKRGTSIYLVDKVIPMLPESLCNEVCS 206 Query: 273 LRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA 332 LR NE + + + I N I S + Y++ + +E + E + Sbjct: 207 LRPNEDKLCFSVIFEMDGKAKI-HNYRIRRTIIRSDHRFTYEEAQEIIERSFATNYEDCS 265 Query: 333 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA 392 + V L + + E R ++ + + + +F L +G LDI + AN++VEE Sbjct: 266 LNSSVFTLNCLAKILREKRFSNGSIDFVQREIQFDLDREGNPLDIYLKKNNEANQLVEEF 325 Query: 393 MIAANICAARVL-----RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAE--EVLT 445 M+ AN A ++ + +Y VH D L L+++ G ++ + T Sbjct: 326 MLLANKTIAEIVGKVPKNKRAKPFVYRVHGLPDIEKIKNLKQLVRSFGYKLNIKRINNET 385 Query: 446 LDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGD 504 L +++ + +++ R A +TE H+GL + Y +TSPIR+Y D Sbjct: 386 SKNISSLFKQVQGTREQNLIETIALRTMEKAIYTTENVGHYGLAFKYYTHFTSPIRRYPD 445 Query: 505 MINHRLLKAVI--KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 MI HRLL+ + K + + + + +E+ + AER F+ K G Sbjct: 446 MIVHRLLEKYLNRKYSVSKKSLERLCKHCSEQESIAIQAERASIKAKQVEFMSTKVGN-- 503 Query: 563 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN--GTVQIKGETVYKV 620 F I +++ G+ V L NG IP +L D+ E + + +Y + Sbjct: 504 TFDGVISNVTEWGLYVELG-NGCEGLIPMRYL---DDDFYELDEKTYRLIGKTKKHIYCL 559 Query: 621 TDVIDVTIAEVRMETRSIIARPVA 644 D + + + +E R + P++ Sbjct: 560 GDPLQIRVIHSNLEKRQLDFAPIS 583 >UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9F9_SORC5 Length = 790 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 168/662 (25%), Positives = 272/662 (41%), Gaps = 40/662 (6%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKER 70 ++Q+ ++ EG + +GFGF+ + +I P M +HGD ++ I + R Sbjct: 77 QKQVEARGAEREGTLTVHPRGFGFVALGGAADDVYISPEAMGGALHGDTVVVRISTRSRR 136 Query: 71 E-SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG----LNHEFKEG 125 E +V+ R G ++ + + PD ++ I + + ++G Sbjct: 137 GVEGEIVRVVKRRHARVAGVLRRRGRSAWLEPDDGRVRGPIVIVPREPGAPLVPPDAEDG 196 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-----------A 174 AV + R P + + L + D V L R +E+E Sbjct: 197 AAAVVSIARFPDLAEENPEGVLEAVLGTPGDPNVEVAKILVREGIEEEHAPEAIAEAEAF 256 Query: 175 PDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 V E L+ R DLT L TID D DDA++ D + +AIAD + + Sbjct: 257 GGEVPAEALE---GRTDLTHLPMPTIDPEDARDHDDAVWVIREEDGSYRAWIAIADVSHY 313 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + GS LD+AA R + YLP IPMLPR LS +LCSL +R L + L A + Sbjct: 314 VRPGSALDQAALARGNSVYLPDRAIPMLPRALSSNLCSLLPGVIRLCLCVEVELDATAAV 373 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ--PESEAIAEQVRLLAQICQRRGEWRH 352 I S AKL Y V+ L T + PE+EA+ ++++ + + R Sbjct: 374 R-RARVIEGYIRSIAKLTYPGVARALGFTPEPPRSPEAEALRNDLQVMWDLARLLRGRRM 432 Query: 353 NHALVFKDRPDYRFILGEK-GEVLDIVAEPRRI----ANRIVEEAMIAANICAARVLRDK 407 + D P+ + +L K G +D+ A +++EE M+ AN A+ + D+ Sbjct: 433 RRGALDLDLPEAKVVLDPKTGAPVDVQKRSHDPGVAKAYQLIEELMLLANETCAQFVVDQ 492 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDS 466 ++ H D A + A + GL D E+ ++LDA P L Sbjct: 493 GIPTVFRYHAPPDQAKLERFATMCGELGLAFDPEDAADPKRLSVFLKKLDAHPQKQVLHM 552 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD- 525 + R A HFGL AY +TSPIR+Y D+ HR ++AV++GE R + Sbjct: 553 LLLRAMKQAVYDVANVGHFGLASSAYLHFTSPIRRYPDITAHRAIRAVLRGERVDRSEAA 612 Query: 526 -----EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 E + +ER R ER+V D A ++ + G F + I GG+ V + Sbjct: 613 TERLREAAITASERERKAMEVEREVVDLHRALLMRSRLGD--TFEGTVTGIVGGGVYVNI 670 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 D + L D+ E + + + D + V I +V + R++ Sbjct: 671 EDPFVDVLVRMESLGP--DQYEIDDEGLRVIGRRSGDRIAIGDAMLVQIEDVAILRRAVY 728 Query: 640 AR 641 R Sbjct: 729 GR 730 >UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_CHLTR Length = 694 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 155/639 (24%), Positives = 257/639 (40%), Gaps = 34/639 (5%) Query: 21 RAEGVVKAT-EKGFGFLEVDAQK----SYFIPPPQMKKVMHGDRIIAVIH---SEKERES 72 G + KGFGF+ D + FI +K + GD ++ + E+ Sbjct: 18 LVPGTLFVHSRKGFGFVSPDQPELYPFDIFISASDLKGALDGDHVLVALPFSLRGGEKRK 77 Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 +++ T VG + + + + P +A +K GD + + Sbjct: 78 GVIHKVLSRGKTVLVGTIVSLINPTLAMVYVNTIGPEHPLKAELLPKRTYKLGDRLLLKT 137 Query: 133 RRHP--LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-------- 182 + ++I + + V A ++ +E PD V E Sbjct: 138 PVWKENYPSREPPPLAMLEFIGNISNAKTDFPVIKAEFSITEEFPDAVVQEASQFLQKHV 197 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 R+DL L TIDS+S +D DDA+ + L V IAD + ++ S LD Sbjct: 198 TQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALD 257 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A R + Y PG IPMLP LSD+LCSL+ N R ++ MT S +G + D Sbjct: 258 REAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSD-YRILR 316 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I SK ++ YD+V + +E + ++ I++ + +A++ + + R P Sbjct: 317 SVIRSKYRMTYDEVDEIIE-----KKQTHPISKTILKMAELSRIFSDIREQRGCTRLVLP 371 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + L E + ++ + A++++EE M+ AN A + + + H + Sbjct: 372 SFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPFRTHEPPNEE 431 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEP 481 + K G + D L+ P L S+ R A STE Sbjct: 432 SLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSMKTASYSTEN 491 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMA 541 H+GL L+ Y +TSPIR+Y D+I HRLL + E ++I + + R+ A Sbjct: 492 KGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE--EHLEQIVRACSSQERIAAKA 549 Query: 542 ERDVGDWLYARFLKDKAGTD--TRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 E + ARFLK T + A I+ S G+ L + FIPA L Sbjct: 550 EGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEFCHEGFIPAAKLP---Q 606 Query: 600 ELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 V + G ++ + VI V +A V + T+SI Sbjct: 607 AYVLQTKIGLEELPEH--LRPGAVISVQLASVTLLTQSI 643 >UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF06_9ACTN Length = 694 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 168/691 (24%), Positives = 274/691 (39%), Gaps = 85/691 (12%) Query: 26 VKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIA---------VIHSEKERESAEPE 76 ++ G+GF++ A+ +FIP MK GD + +R Sbjct: 2 LEVMPSGYGFVKT-AEGEFFIPESAMKSAFDGDVVAVSRASGGDGNRRARRTDRPQGRVA 60 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 +V VG+ + +VP+ P ++ I R +EGD + +P Sbjct: 61 RVVTRAHASIVGRYEIAEPYGVVVPEDPRIRHDIF--TLRRDASTAREGDIVRVRITAYP 118 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD-----------GVATEMLDE 185 G + + + + + D + + +ARH L D G+ + DE Sbjct: 119 EAG-QPAFGSIEEVVGHEGDAGIDVDLIVARHTLATCFSDDALAQAASAEAGIDRALRDE 177 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 G DL TID + D DDAL + D L++ V IAD + +++ + LD A Sbjct: 178 GY--RDLRHRITFTIDPSDARDFDDALSFDEV-DGLLRVGVHIADVSRYVSWATPLDFEA 234 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 + RA + YL +PMLP +LS+D+CSL+ N R + + S + ++ + A I Sbjct: 235 RARATSVYLVDRVLPMLPEKLSNDICSLKPNVARRAVTVDLYYSHALELV-RVDAYPAVI 293 Query: 306 ESKAKLVYDQVSDWLEN------------------------------------------T 323 ESKA+ VY+ V LE+ Sbjct: 294 ESKARFVYEDVQACLESMRALGSSDLEGRETPRYACSADELSGSCTLDGALRSALGSSVA 353 Query: 324 GDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRR 383 GD AIA ++ L +I + R + DR + + L ++G L + R Sbjct: 354 GDDMHGIRAIAARLESLHRIARALRARRARAGGIDFDREETKVRLDDQGRPLSVDLRRRN 413 Query: 384 IANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLH----VD 439 A +VEEAMI+AN AR++RD IY VH D + + +L G + Sbjct: 414 DATSLVEEAMISANEAVARIMRDAGAACIYRVHEAPDSGDLIDIVPILDEFGYDDAVSLS 473 Query: 440 AEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSP 498 A + + + +P G L S + R A + E PHFGL AY +TSP Sbjct: 474 AFAMGSPKAVQAVLARAHGRPEGSLVSMLVLRAMKQARYAPECQPHFGLASAAYLHFTSP 533 Query: 499 IRKYGDMINHRLLKAVIKGETATRPQDE-----ITVQMAERRRLNRMAERDVGDWLYARF 553 IR+Y D++ HRLLKAV++G T E I + + ++ A R+ + Sbjct: 534 IRRYPDLMAHRLLKAVLRGRDGTTSAQEAALPDIADHASRQEKVAETAARESQELKMYEL 593 Query: 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIK 613 L + G F + +S G VR+ + GA F+P L + S ++ Sbjct: 594 LSEHIGEP--FDGMVSGVSTSGFYVRI-EMGAEGFVPMRDLGEFF--HLDSARRMLSGVE 648 Query: 614 GETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 V ++ D + + + V R+ + Sbjct: 649 SGDVVRLGDAVRIRVVAVFPYARTATFALAS 679 >UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1M4_ERYRH Length = 729 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 143/634 (22%), Positives = 267/634 (42%), Gaps = 43/634 (6%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPE 76 G + + F F E + S++I + D ++ I S ++R Sbjct: 65 DNVKYGIGSFRVVRETFAFAETIS-DSFYIGKDDFNGALDMDDVLFEIKSNEKR-FGVVI 122 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 + V+ +G ++ +L +P + + A+ + KE D + + Sbjct: 123 KSVKRNRDVILGTMKKDGKKLFFIPYDNKITFKVEYDASN---LDLKENDRCIGRITSVG 179 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLV 188 + + ++ + D+ + L + ++ + V E+ +E Sbjct: 180 ER----IHVDIISVLGQADEPGMDVLSVLFVYGIDNDFKQEVLDEIKNVPTEIDQNETKH 235 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D +TID +D+DDA++ +AL + +L V IAD ++ + LD++A R Sbjct: 236 RMDHRDQYVITIDGEDAKDLDDAIYMEAL-NGGYRLYVHIADVGHYVQPQTALDQSAYER 294 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + + Y+ +PMLP+ELS+ +CSL N R + C++ +S G + D + + I SK Sbjct: 295 SSSVYMVDRVVPMLPKELSNGICSLHPNVDRLTMTCQIDISYAGEVID-YNIYESVICSK 353 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 ++ Y +V+ P+ + E V ++ +R R+ + D + +F++ Sbjct: 354 RRMSYKEVN--------TSPDLGEVQEMVSMMLDCARRLQYKRNQAGQIGFDSAESQFVI 405 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 +G VLDI R A ++E M+ AN A+ R + +Y VH D L+ Sbjct: 406 DHEGNVLDIFLRERGEAEEMIESFMVIANEVVAQHCRYQSIPVLYRVHEAPDREKMQELS 465 Query: 429 ALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEISTEPGPHFG 486 L+ G + E + K + + +P + SR + R + A+ S EP HFG Sbjct: 466 HTLRILGYRLKGNLEEIRPKEIQKALKFFEGKPEYPVVSRLMLRSMTKAKYSQEPLGHFG 525 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAV-IKGETATRPQD-----EITVQMAERRRLNRM 540 L LE Y +TSPIR+Y D++ H+ +K +K + + +D E + ++++ R Sbjct: 526 LALEDYTHFTSPIRRYPDLLLHQRIKQYAVKHDFSKLEKDEQFTIEAGLHVSKKERSILD 585 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AER V A+F+ +K G + + I IS G+ V L N I L+ D+ Sbjct: 586 AERQVEKIKKAQFMSNKIGEE--YVGFISGISNFGIFVELP-NTVEGLIHVRNLN---DD 639 Query: 601 LVCSQ--ENGTVQIKGETVYKVTDVIDVTIAEVR 632 + + Y + + V + V Sbjct: 640 FYTFDGPSQKMIGERTGRTYSIGQKLKVKLVSVD 673 >UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4AAR6_MYCHJ Length = 694 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 141/650 (21%), Positives = 251/650 (38%), Gaps = 35/650 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLE----VDAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 K G+ +AT FGF+E + + FIP + GD + I+++ Sbjct: 56 KYYAPKFLKTTSGIFRATNSAFGFVEDKENPIQKNNVFIPGRFTASALEGDEVKINIYAD 115 Query: 68 KERES---AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 + + ++++ +GK P + K R + Sbjct: 116 RFKSDQVFGIVTKIIQRNNKFLIGKAFKNGKYWDFEPVN--FKGDFLFRW--NTTDDLIN 171 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD 184 ++ ++ + + + Q I + F+ + + + + V E Sbjct: 172 DNYYKVKIIDYQ---KNTLKISIIQKIGHKSEPFLYVKIPIIESEVSNKFSADVLEEAEK 228 Query: 185 E-------GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 R DL +TID T+D DDA+ K + L V IAD ++ + Sbjct: 229 IEKEITNIEKNRTDLRDELVITIDGEDTKDFDDAISVKKTNEGNFLLKVHIADVAHYVKQ 288 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S +D A+ R + YLP IPMLP ELS+ +CSL+ N R + ++ G + Sbjct: 289 DSPIDVEAQRRGTSIYLPHTVIPMLPEELSNGICSLKPNVDRFTITMESLINKRGENL-S 347 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 I+ + + I SK +L Y V+++ + + + ++ ++ ++ N + Sbjct: 348 IKIYPSVINSKWRLTYKDVNNFFNGKSSFNDTNLE--KMLKTAQELNTILSLFKKNQGYI 405 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + + IL E+G + + R + ++E MI AN + L + +Y VH Sbjct: 406 DLAIDEIKIILDEQGFTESLKLKSRGTSEELIENFMIRANENVSEFLTKRKIPILYRVHN 465 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAE 476 DP +LK G+ + F + E+ + FL I R A Sbjct: 466 KPDPEKIMIFNQILKVLGVKNTLKLNSNSREFARKIDEIKTKNNDNFLKYSILRTMQKAI 525 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEITVQM--- 531 STE HFGL Y+ +TSPIR+Y D+I HR+++ I K + + +T Sbjct: 526 YSTENIGHFGLAANFYSHFTSPIRRYPDLILHRIIRFFIFEKNKNFDFFNEILTKNSYLT 585 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG-AIAFIP 590 E + ER + + ++K G F A+I I + G V + NG A + Sbjct: 586 TELEQKAFNLERKIVNIKKTEYVKKLIG--QTFNAQITSIIKSGFFVEI--NGLFDAMLS 641 Query: 591 APFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 L ++ E+G +K+ + ID+ I V + I A Sbjct: 642 NKSLPNNENDPYQLTEDGFCIYNSRRRFKLGEFIDIKIESVNVWEGKISA 691 >UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC79_9DELT Length = 660 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 163/635 (25%), Positives = 261/635 (41%), Gaps = 48/635 (7%) Query: 27 KATEKGFGFLEV---DAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFL 83 G+GF + D ++S FIPP ++ + GD I V ++ E +V Sbjct: 2 HVNPGGYGFAQPLSGDEKRSVFIPPGYLRGALDGDEIEVVAWESEKGLEGRIEAIVTRKR 61 Query: 84 TRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK------EGDWAVAEMRRHPL 137 TR VG + + D P + + C A K G VA + +P Sbjct: 62 TRIVGVLVEFGGGWILEVDDPRIIWPVVCVAGPKGRKGSKAPRPDMPGMVVVANIVNYPG 121 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-------LDEGLV-R 189 D ++ + + L +E V E LDE L R Sbjct: 122 SRDPEIEVQVERVLGEPGALETEVQKILIDRRIEDFFDPKVLAEAAEVPEIVLDEDLENR 181 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDD----KLQLIVAIADPTAWIAEGSKLDKAA 245 DL L F+TID D DDA+ + L +D +L VA+AD + ++ EG+ +D+ A Sbjct: 182 ADLRGLAFMTIDPPDARDFDDAVCVELLGEDPQTADYRLHVAVADVSHYVQEGTAIDEEA 241 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 + R F+ YLP +IPMLP ELS +CSL R + M ++A G ++ E AA I Sbjct: 242 QRRCFSTYLPDRSIPMLPPELSSHMCSLVPKRDRLAMVTSMRVNAAGQTSEH-EVRAAII 300 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 S+ +L Y +V++ LE ++ +R R R + D + + Sbjct: 301 HSRRRLTYAEVAEELEGAEQLGKKARGRVFALR---ACSDRLRNARMRRGAIELDLAEAK 357 Query: 366 FIL--GEKGEVLDIVAEPRRIAN----RIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 +L ++ + D+V + ++EE MIAAN + + ++ VH Sbjct: 358 VVLEEDDRTRIRDVVKSRSSKSMARAYNLIEEMMIAANEAVGALAVEHGLPAVFRVHDLP 417 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEIS 478 D L G D E + T G K + LD + L+ + R + A+ + Sbjct: 418 DEEKLTTLTQAAHILGTKADPERLRTPRGAQKFLKRLDGKSFASALNMLMLRAMAQAQYA 477 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-------------TATRPQD 525 E HF L AY +TSPIR+Y D+I+HR+LKA + + + Sbjct: 478 VENVGHFALASPAYVHFTSPIRRYPDLISHRVLKAWVAKKGGPAGPKAVLPRMPGREASE 537 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 ++ +ER R AER+ + A F++D+ G RF + +S+ G+ V++ Sbjct: 538 AQALRSSEREREISGAERETQNLFAALFMRDRIGD--RFDGRVSGMSQFGLFVQIESPYV 595 Query: 586 IAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKV 620 + L R E E G V++ GE KV Sbjct: 596 DGMVKVADLEKDRKEPYYRDETG-VRMVGEKSGKV 629 >UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XL74_HIRBI Length = 758 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 165/603 (27%), Positives = 259/603 (42%), Gaps = 29/603 (4%) Query: 57 GDRIIAVI-HSEKERESAEPEELVEPFLT-RFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 GD+ + + + A+ + +E T +G + + P K+ Sbjct: 115 GDKALCKVGKANDSLWYAKVIKKIENTTTSTVIGLFEANKHGGRVKPTSRKDKNEYLVE- 173 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 + L+ + + GD +++ K AE+ + + ++ + L H++ E Sbjct: 174 -KILSKDAETGDIVRISLKK--SKPYGPQMAEVVEIVGRMENPKSASLIALHTHDVPDEF 230 Query: 175 PDGVATEMLD---EGLVREDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVA 227 P + E + + REDLT + +TID A D DDA+FA+ D + VA Sbjct: 231 PVEIIAEAENATAQKTAREDLTDIPLITIDPADARDHDDAVFARPDEDEGNNGGWIVYVA 290 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD A++ G+ LD A R + Y P PMLP LS + CSL+ NE+R A M Sbjct: 291 IADVAAYVQHGTALDDEAYKRGNSTYFPDRVAPMLPEALSAEQCSLKENELRETFAVEMR 350 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 SA+G + F T+ S AKL Y+Q ++ D + + ++ L + Sbjct: 351 FSANGNKIGH-RFIRGTMRSAAKLSYEQAQAAIDGKPDDKA-GPLLETVLKPLWAAYECV 408 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 G+ R + D P+ R L + G VL + + R A++++EE MI AN+CAA L Sbjct: 409 GKARTRRQPLELDLPERRVTLDKDGTVLGVFTKDRFDAHKLIEEFMIQANVCAAESLEKA 468 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR-RELDAQPTGFLDS 466 IY VH AL L T G+ T + F L + + + Sbjct: 469 NSPLIYRVHDEPSDEKILALGFFLPTIGMKWARGAKKTAERFNDLLAQARRTEHEHLVSE 528 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------A 520 + R QS A + E HFGL L YA +TSPIR+Y D+I HR L + Sbjct: 529 MVLRSQSQARYAPENFGHFGLNLAKYAHFTSPIRRYSDLIVHRALIRALSLGPDGLSDVE 588 Query: 521 TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 ++ +EI + R + AERD D F+ +K G + F I +++ GM V+L Sbjct: 589 SKRLEEIAEHLTTTERRSMAAERDATDRYLVAFMSEKVGAE--FQGRIAGVTKAGMFVKL 646 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 D+GA FIPA L DE E+ V E Y++ + V + E T + Sbjct: 647 DDSGADGFIPAARLS---DEYWLYDEHNAALVAEGSEKRYEMGMPVLVKLEEATPLTGGL 703 Query: 639 IAR 641 + Sbjct: 704 LFE 706 >UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHG7_9BACT Length = 763 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 138/644 (21%), Positives = 252/644 (39%), Gaps = 31/644 (4%) Query: 8 LAQLKQQLHSQTPRA-EGVVKATE--KGF--GFLEVDAQKSYFIPPPQMKKVMHGDRIIA 62 + + KQ + P+ +G+ AT +GF F+ +K Y++ + H D + Sbjct: 66 MPKAKQPSPTPNPKLLQGIFDATPLSRGFSYAFIRTP-EKDYYVDAEDILNAFHNDIVAF 124 Query: 63 VIHSEKE-RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHE 121 K ++SA ++V+ +FVG++ +N + +P + + Sbjct: 125 EPKYRKGHQDSAIIRKVVKRSTEQFVGELIRRNGFSTFICSNPKVFRWFFV----SDPAQ 180 Query: 122 FKEGDWAVAEMRRHPLKG-DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 + GD V ++ + ++ + + + V + ++NL E P+ V Sbjct: 181 GENGDKVVLKVTNWGNPQMGKVPVGKVIEILGKSGEPEVELLAVIRQYNLPLEFPEDVIA 240 Query: 181 EM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 E ++ R DL L TID + +D DDA+ + +L V IAD Sbjct: 241 EANLLSAEIKPEDYRNRRDLRNLYSFTIDPITAKDFDDAIAVEKTSKG-WRLYVHIADVA 299 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 +++ + + A R + Y P IPMLP LS+ +CSLR E + L + G Sbjct: 300 HYLSVEGAIFQEASKRGNSFYFPKRVIPMLPERLSNLICSLRPEEEKLCLTVQTDFDRKG 359 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 I + + + + I S+++L YD+V + P + + + + + E R Sbjct: 360 QIIEQ-QIYESVICSQSRLNYDEVDELFAGKKTDIPI--PLQDILLEARALSRLLTEKRM 416 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 N +F D P+ + E G + + +++I+E M+ AN A L I Sbjct: 417 NAGYIFFDLPEIEYEYDENGFLKCLTLAEETESHKIIENFMLVANEFVATRLSQTAPATI 476 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQ 472 Y +H D + L LL +G+ E L L + D + R Sbjct: 477 YRIHNDPDFNKLERLIELLSYYGVKWVMYENLNKSIQYLLNSFPNEAYHKVFDRILLRSM 536 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI----KGETATRPQDEIT 528 A STE HF L +E Y +TSPIR+ D++ H L K + + Sbjct: 537 KKARYSTEHIHHFALAMENYTHFTSPIRRLCDLVVHYLCKTWLCHTSNQKFTPSQLKHFA 596 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 +E+ +ERD+ +++K G + ++ ++ G+ V+L + Sbjct: 597 EVASEQEIQADQSERDIEMVYSLALMREKEGE--LYEGMVISVNSRGLIVQLEEIPVTGV 654 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVR 632 I L E +E + + Y++ D + V I V Sbjct: 655 IKEISLGEGNWE-YLEREMRYINRRTHKYYQLMDTLTVIIGYVE 697 >UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LXJ9_DESBD Length = 701 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 153/660 (23%), Positives = 260/660 (39%), Gaps = 35/660 (5%) Query: 1 MFQDNPLLAQLKQQ-LHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHG 57 M + ++ K L PR G + G G+L D QK FI P G Sbjct: 54 MVESGEIVQMGKSYGLIDNLPRMTGTLDVRRSGVGYLIADDRKQKDLFIHPNNFGGAWPG 113 Query: 58 DRIIAVIHSEKER--ESAEPEELVEPFLTRFVGKVQGK--NDRLAIVPDHPLLKDAIPCR 113 D+++AV+ S +++ E+++ + +V + D P + Sbjct: 114 DKVVAVVDSSRKKDSPEGRVVEVLDRATRELLVRVSRRIHQDSYFCHPTDSRMPFYTVVD 173 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 + N E +GD KG + + + D + +++ + Sbjct: 174 TSDVPNPE--KGDILSVAPVEEQEKGI--WRCTALRRLGEERDLATQELLVKTGYSIPEV 229 Query: 174 APDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 P + + R DL L VTID + +D DDA++ + + +L+ Sbjct: 230 FPVPALRQAEALPDTPSPQDWAERNDLRKLALVTIDGETAKDFDDAVYVERQENG-YRLV 288 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 VAIAD ++ EGS LD A R + Y P PM P LS+ LCSLR R + Sbjct: 289 VAIADVAHYVPEGSPLDVEALARGNSYYFPLSVEPMFPEALSNGLCSLRPKVARLAMVVD 348 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 S DG + A I S+A+L Y+QV L+ T D ++ + +R ++ + Sbjct: 349 TPYSMDGE-PGAPRLYNAVIMSQARLTYNQVQAALDGTPDQ--DTAELLPMLRDAEELAK 405 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + R + + D P+ + + E ++ + A R ++R++EE MIAAN A + Sbjct: 406 IFMKRRMDRGCLDFDIPEAQVRVIED--IISVHAGTRLFSHRLIEEFMIAANERVAEYMG 463 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL- 464 + Y +H D + L +L L + + G + +L Sbjct: 464 ARQRVFPYRIHPQPDEKKLETLLRMLSHTSLVDRLPKEMNQMGLQHISHAAKGTDIEYLV 523 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + I R A+ S E H+GL AY +TSPIR+Y D++ HR LK +I GE Sbjct: 524 NRLILRTMMQAQYSPENDGHYGLASVAYCHFTSPIRRYADLLVHRSLKRLIAGEPEKMSM 583 Query: 525 DE---ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 + I + R AER++ L+D+ G + R + ++ G V L+ Sbjct: 584 GDVQGICEGLNALERKAMEAEREIQKRSAILALEDRIGEEMR--GVVSGVADFGFWVELL 641 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 D + L + D V E + + + + ++V + V +E I Sbjct: 642 DMPVDGLVR---LATLDDFYVFDPERQDLLGQRTGKTFAMGQTLNVVLEAVSLERVEINF 698 >UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BU01_GRABC Length = 812 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 154/556 (27%), Positives = 240/556 (43%), Gaps = 29/556 (5%) Query: 97 LAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDD 156 +VP K A G + GD A H G + A + + + D Sbjct: 237 GRVVPTDRRSKAEWLVPA--GEEGGAEPGDIVRAMPLPHTGYGLKP--ARIIEKLGKIGD 292 Query: 157 HFVPWWVTLARHNLEKEAPDGVATEMLDEGLV----REDLTALDFVTIDSASTEDMDDAL 212 + + H++ + PD +E V REDL + +TID D DDA+ Sbjct: 293 ARSVSLICIETHDIPQIFPDEALSEARKARAVPLEKREDLRDIPLITIDGEDARDFDDAV 352 Query: 213 FAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCS 272 FA+ +D +LIVAIAD ++ GS LD+ A R + Y P +PMLP LS+ CS Sbjct: 353 FAERAENDGFRLIVAIADVAHYVRPGSALDREAFKRGNSCYFPDRVVPMLPEALSNGWCS 412 Query: 273 LRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA 332 LR +E R L M ++A G + F + S A+ Y++V EA Sbjct: 413 LRPDEDRGCLFVEMMINAGGGKIRH-RFGRGLMRSTARRTYEEVQQA----------HEA 461 Query: 333 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA 392 E + L + R + D P+ + IL E G V I+ PR ++R++EE Sbjct: 462 GDETLDALYGAYHALIKARTARGTLDLDLPERKVILNEAGSVDAIIPRPRLDSHRLIEEF 521 Query: 393 MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKL 452 M+ AN+ AA L +Y VH +AL L + G+ + + + Sbjct: 522 MVLANVAAAEELERLHRPCMYRVHAPPSDEKTEALRGFLDSFGISLPPAGQIHPRDLDHI 581 Query: 453 RRELDA-QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL 511 +++ + ++ + R QS AE + + HFGL L YA +TSPIR+Y D++ HR L Sbjct: 582 LKQVAGTEHAALINETMLRSQSQAEYNPDNIGHFGLALSRYAHFTSPIRRYADLLVHRAL 641 Query: 512 KAVIKGETATRPQDE------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA 565 A +K + DE I + R MAERD D A F+ D+ G RFA Sbjct: 642 IAGLKLGVGSLEDDEASRFVDIAEHITATERRAAMAERDAIDRYLAAFMADRVG--ARFA 699 Query: 566 AEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVID 625 A I ++R G+ + + +NGA +P L + +E + V+++ + Sbjct: 700 ARISGVTRFGLFITVEENGASGIVPISSLPDDFW-IHDEREQALIGRNSRAVWRLAQSVT 758 Query: 626 VTIAEVRMETRSIIAR 641 V +AE T ++ Sbjct: 759 VRLAEATPITGGLVFN 774 >UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF96_ACHLI Length = 728 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 140/646 (21%), Positives = 261/646 (40%), Gaps = 40/646 (6%) Query: 15 LHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESA 73 + + A G + ++ FL + K I + M D ++A I Sbjct: 49 IQLKKRYALGKITI-KRTIAFLMMPEGAKDIAIDLFDLNGAMESDIVLADIVGYN----P 103 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 +E++ LT+ + V+ ++D+ + I + + +G + ++ Sbjct: 104 YIKEIIHSNLTKLIADVKIRSDKKMRFDANEAQNKLIIV---KDVPDYLVDGHVVLLDVT 160 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD-------EG 186 + + + I +D + + + + V E+ E Sbjct: 161 E---VTRTQIFTKFREVIGHKNDPDMEIVKIVYEYEWPLKFSKEVLNELHHIKIDHEYER 217 Query: 187 LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 R D+T VTID A +D+DDA+ + L + +L V IAD + ++ EGS L++AA Sbjct: 218 KTRRDITDKLVVTIDGADAKDLDDAISLEYLENGNFKLGVHIADVSYFVKEGSYLNEAAY 277 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 RA + YL IPM+P LS+DLCSL NE + + C M L+ D + N + +A+ I+ Sbjct: 278 NRATSVYLADRVIPMIPHGLSNDLCSLNPNEDKYTITCEMELNPDIEVV-NYDIYASIIQ 336 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 SK +L Y V+ + + + + + + +I Q+ + R + + + +F Sbjct: 337 SKHRLTYHDVNQLFKEHQST--GFKEVDKMLFTMNEIAQKLKQIRTKRGAIDFNSTELKF 394 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 +L G+VL + A ++E MI AN +R GIY VH D Sbjct: 395 VLDVNGDVLGVEERTTDEAEALIESFMILANETVSRHFFFNDLPGIYRVHEKPTSEKLDI 454 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEISTEPGPHF 485 G VD + +L +++ P ++ + + R A S +P HF Sbjct: 455 AFESSAKLGFRVDQSAKSSAQKLQRLTKKVAQTPYEYIINMILLRSMQKAIYSEKPIGHF 514 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI-----------TVQMAER 534 GL Y+ +TSPIR+Y D++ HR+++ ++ ++ + + + Sbjct: 515 GLASAYYSHFTSPIRRYPDLLLHRMIRDLMLNNPDAETLKKLKKHYRDLMPSYSEHTSNQ 574 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R ER+V +++ + F +IV + G V+L +NG + + Sbjct: 575 ERQAVNMEREVNKLKSRQYMAQFI--NQSFDGQIVSMMPSGFFVKL-ENGIEGLV---NV 628 Query: 595 HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 V L+ E + Y++ D I V + +V +I Sbjct: 629 RNVNQYLIYDDEALLFYTERGKRYRLGDKIRVKLIKVDEVENNIDF 674 >UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYR8_DESDA Length = 852 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 157/669 (23%), Positives = 242/669 (36%), Gaps = 51/669 (7%) Query: 17 SQTPRAEGVVKATEKGFGFLEV----------------DAQKSYFIPPPQMKKVMHGDRI 60 G A +G GF+ K +IP Q H D + Sbjct: 82 ENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFSGGKDIYIPSAQNGGAWHQDLV 141 Query: 61 IAVIHSEKER---ESAEPEELVEPFLTRFVG-KVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 + +R E+VE L V + L P L Sbjct: 142 RVALSPGAQRGPSPEGRIVEIVERGLKEVPAHVVHRHGNSLFCRPADSRLPADFNVELPA 201 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 G + G + + PL D + A L DD V + H + ++ P Sbjct: 202 GSEAPAQ-GTLVLLAPLK-PLASDL-WSATLLGNYGREDDVAVQEELVKLNHEVPRDFPA 258 Query: 177 GVATEM-----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD-KLQLIVAIAD 230 G E + R D+ L VTID A D DDA+ + P L VAIAD Sbjct: 259 GALAEAEALPGEADFKGRRDVRDLALVTIDGADARDFDDAVHVEEQPGGKGWVLRVAIAD 318 Query: 231 PTAWIAEGS-----KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 + ++ LD A R + Y P PMLP LS+ LCSLR + R + Sbjct: 319 VSHYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLSNGLCSLRPHVNRLAVLAE 378 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD-------WQPESEAIAEQVR 338 + +A G F + S A+L YDQV + + + + E + + Sbjct: 379 IPFTAAGK-PGKPRFSEVVMRSAARLTYDQVKACILDKDEAALAELRTEERGEEVLAMLD 437 Query: 339 LLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANI 398 + + R + D P+ + L + G V+ + R A+R++EE MIAAN Sbjct: 438 KAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRERNDAHRLIEEFMIAANE 497 Query: 399 CAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA 458 AR LRD +Y VH DP ++L L G+ + + + Sbjct: 498 AVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIE-NLPPKPSPAAMQGILAAAQG 556 Query: 459 QPTGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 P FL +R+ R A HFGL AY +TSPIR+Y D++ HR LK + Sbjct: 557 TPQEFLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRRYADLLTHRALKMSLGL 616 Query: 518 ETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 ++ P E I Q+ R R ER++ L L + G F+ + ++ Sbjct: 617 DSGPLPAGEKLLRIGDQINRRERAAMACEREMDRRLGCLALLPRVGE--HFSGIVAGVTD 674 Query: 574 GGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 G+ V L I L + ++ V + +++ ++V ++EV + Sbjct: 675 FGVFVELEAMPVEGMIRVEDLGDDWYDF-DARLMSLVGQRSGVQWRMGQKLEVALSEVHL 733 Query: 634 ETRSIIARP 642 I P Sbjct: 734 GRLEIRLMP 742 >UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0TXI0_FRAP2 Length = 766 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 153/615 (24%), Positives = 259/615 (42%), Gaps = 29/615 (4%) Query: 46 IPPPQMKKVMHGDRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDH 103 I Q K VM GD + A + ++ R AE + +V G D I P Sbjct: 115 IVSHQAKMVMVGDEVTAKVLGLNKRGRIDAEIQTIVSRAQKTITGYYYKSFDCDFIKPVS 174 Query: 104 PLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWV 163 + I + + + AE+ +P + A+ Q + + Sbjct: 175 KSMTSDIVLLPPK---QKIEHNSLIEAEIIVYPS-INSVAVAKFKQEVEAVSPVKEAMMM 230 Query: 164 TLARHNLEKEAPDGVATEMLDEGLV-----REDLTALDFVTIDSASTEDMDDALFAKALP 218 +++L ++ + D R DL +FVTID +D DDA++A Sbjct: 231 ATQKYDLIEQWSKKTLRYLDDISDDVIVGNRVDLRNENFVTIDGEDAKDFDDAVYAYKTK 290 Query: 219 DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEV 278 +L VAIAD + ++ + S LD AK R+ + Y PG+ IPMLP +LS+ LCSL+ NE Sbjct: 291 SGSWKLYVAIADVSNYVEKDSSLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNED 350 Query: 279 RPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQV 337 R L C M +S +G + +F++A I SKA+L Y +V+ +E + E + + + Sbjct: 351 RYSLVCEMNISKEGKL-SRYKFYSAVINSKARLTYTEVAKLIEKKQNTIVEKTPELVPNI 409 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN 397 L ++ + + R + D + + IL + + IV R A+R++EE M+ AN Sbjct: 410 FDLYELYKVLHQARQERGAIDFDTVETQIILNDHNHIESIVPRHRNDAHRLIEECMLVAN 469 Query: 398 ICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV--LTLDGFCKLRRE 455 + AA+ + VH + L L HG+H+ + +T ++ Sbjct: 470 VAAAKFTIKHKKTSPFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDS 529 Query: 456 LDAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 + +P + R + A S HFGL Y +TSPIR+Y D++ HR++K++ Sbjct: 530 IKDRPDYDDIQMMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSI 589 Query: 515 I----KGETATRPQD--EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 I G +P + I +++ R A + V +WL F++D G A+I Sbjct: 590 IGEYEHGGADYKPSELANICENASDQERNADGASKQVENWLKCYFMQDYIG--HVLEAQI 647 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDV 626 ++ G+ L D I + + E + I T VYK+ I V Sbjct: 648 KHVNGLGLFAELKDMYIEGLIHVSAIPG---DYYIYDEAKDILIGKRTHKVYKIGQDITV 704 Query: 627 TIAEVRMETRSIIAR 641 + ++ I Sbjct: 705 RVVRADLDRIHIDFE 719 >UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_BARGA Length = 758 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 164/623 (26%), Positives = 272/623 (43%), Gaps = 47/623 (7%) Query: 57 GDRIIAVIHSEKERESAEPE---ELVEPF----LTRFVGKVQGKNDRLAIVPDHPLLKDA 109 GD I+ + K ES+ P ++ + F + +N++ + P + Sbjct: 129 GDHILVKVFRNKNSESSSPLYMGRIIRKIDVSPKSAFAVVRKFENNQWRLDPIDRKTNEL 188 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 I + + GD E++++ G +S A++ + + + Sbjct: 189 I---VEMSPEMKIEIGDLVEVEIKKNTGYGLKS--AKIKNVLGHIKSEKTLSMIAILSKG 243 Query: 170 LEKEAPDGVATEMLDEGLV----REDLTALDFVTIDSASTEDMDDALFAKALPD----DK 221 + P+ V ++ RED L F+TID +D DDA++A D D Sbjct: 244 IPYIFPESVLEQVKHIKAANMDNREDWRQLPFITIDPPDAKDHDDAVYATKDKDPANNDG 303 Query: 222 LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPV 281 +IVAIAD + +I GS LDK A R + Y P +PMLP LS DLCSLR + RP Sbjct: 304 WIIIVAIADVSYYIKTGSALDKEALKRGNSVYFPDTVVPMLPERLSHDLCSLREGKERPA 363 Query: 282 LACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLA 341 LA RM A+G + F I +AKL Y +V +E + + + ++ L Sbjct: 364 LAVRMIFDANGNKRKH-SFHRTMIRVRAKLSYQEVQLAIEGNINEKT-AALFESILQPLW 421 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 + R+ + + + + IL + G + D+V+E + A+R++EE MI ANI A+ Sbjct: 422 EAYTCLKAARNRRQPLELEIAEKKIILDQNGCIKDVVSETQLEAHRLIEEFMIQANIAAS 481 Query: 402 RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT 461 L+ IY +H A + L + L++ G+ + LT + ++ P Sbjct: 482 ETLKQHHQPLIYRIHEKPSLAKQEILRSFLQSLGIPLSRGSELTSARLNSILAKVTNTPQ 541 Query: 462 -GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK--GE 518 ++ I R QS AE + + HFGL L Y +TSPIR+Y D+I HR L +K + Sbjct: 542 KELINQVILRSQSQAEYNPKNIGHFGLNLHNYTHFTSPIRRYADLIIHRALIKTLKLGND 601 Query: 519 TATRPQD----EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 T Q+ EI Q++ R MAER+ D L A +L +K G F I +++ Sbjct: 602 QLTDTQEQNLAEIATQISLYERRAMMAERETIDRLVAHYLTNKIGR--IFTGRISGVTKA 659 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVR 632 G+ + L F+ L +++ E V I + Y+++DV++V + V+ Sbjct: 660 GLFISLDKLNTDGFVHISTL---KNDYYHFDEAQHVLIGQRSHKGYQLSDVVEVKLITVQ 716 Query: 633 M-----------ETRSIIARPVA 644 + R I P + Sbjct: 717 PFAGALSFELLTKPRPIKFSPTS 739 >UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma penetrans RepID=Q8EW72_MYCPE Length = 727 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 145/652 (22%), Positives = 264/652 (40%), Gaps = 47/652 (7%) Query: 24 GVVKATEKGFGFLEVDAQKSYF--IPPPQMKKVMHGDRIIAVIHSEK---ERESAEPEEL 78 G + K F ++ +K F I + ++ D + + + + + A ++ Sbjct: 83 GTIIINGKADAFFKIKDEKESFAYINKKNLNSALNNDTVEICLMDKNTYPDLQDAVVTKI 142 Query: 79 VEPFLTRFVGKV-------QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 +E F G + K IVPD + I + + G+ + + Sbjct: 143 IERDRDFFTGTYYLKPTRNKFKKGIELIVPDDKKINLKI----ELDDSSDLVNGNKVLFK 198 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------L 183 + R D Y +++ + DD + +N++ E + E Sbjct: 199 IARI---SDGVIYCSVSKILGHIDDVGNDIISIVYDNNIDPEFDEETKEETSKIDFGFSQ 255 Query: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 +E R+DL+ ++FVTID A+++DMDDA+ D +L VAIAD + ++ S L + Sbjct: 256 EEDAKRKDLSHINFVTIDPATSKDMDDAVCVVKNKDGTYKLYVAIADVSYYVKLHSNLWR 315 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 +A R + YL IPMLP +LS+++CSL E R C M + +G NI+ + A Sbjct: 316 SALKRGTSIYLVNQVIPMLPHKLSNNICSLNPFEKRYAQVCEMDIDKNGEFT-NIQVYPA 374 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I SK K YD V+D+++ + + I E + ++ + R + D + Sbjct: 375 IIFSKYKFAYDNVNDYIKLKKKIEEVPDEIYEMLNTSFELDDYLNKKREKDGYINFDIKE 434 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG--FGIYNVHMGFDP 421 + IL E ++ D+V A +++E M+AAN +Y VH + Sbjct: 435 AKIILDENEKIKDVVIRETGPAQKMIENFMVAANEAVTLKFHQLCPNLPFVYRVHAKPEE 494 Query: 422 ANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEIST 479 + G D + K + P ++ + R + A+ T Sbjct: 495 KRINDFKIEADKIGFIYDRNLTSWKPNTVSKWLEKNKNNPNKDLINMILLRTMAKAKYQT 554 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---------KGETATRPQDEITVQ 530 HFGL + Y +TSPIR+ D+I H LL+ + + + D+ ++ Sbjct: 555 ANLGHFGLSISNYTHFTSPIRRLADVIVHYLLRMFVYEPENYSEQEKDYILCNLDDFCLK 614 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 L ERDV +A ++K+K G + + + I+ G+ V+L +N + Sbjct: 615 ANSCEVLAVETERDVNAMKFAEYMKEKIGCE--YNGFVSYITNFGVFVQL-ENTIEGLVK 671 Query: 591 APFLHAVRDELVCSQENGT-VQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 F+ D V +Q++ T V V + + + + + ET+ I Sbjct: 672 PMFIKD--DYYVFNQKDLTYVGRNKNRVISLGQKVKIRVVDANKETKKIDFE 721 >UniRef50_C5BR14 Exoribonuclease II n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR14_TERTT Length = 655 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 201/665 (30%), Positives = 335/665 (50%), Gaps = 36/665 (5%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M + L L+QLK + + G V T FGF+ ++ + F+ P +M++V+ GD Sbjct: 1 MLDKDTLSRLSQLKSDIQAAKEYGVGHVAGTNGRFGFVRLEDGRDAFLSPEKMQRVIPGD 60 Query: 59 RIIAVIH-SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVP--DHPLLKDAIPCRA- 114 ++ + ++K++ A E L+E L+RF+G+ + +VP + P LK + R Sbjct: 61 KVKVSLTKNDKDQLEATLESLLEQSLSRFLGQYRVTKKGHFVVPLGNAPGLKSSPINRWI 120 Query: 115 --ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 K+GD VA +++HP D A + + I +D + A+++L+ Sbjct: 121 FLPPKSRGRCKDGDMVVARLQQHPY-DDGKASARILENIGQENDPHIERLYVSAKYDLQP 179 Query: 173 EAPDGVATEMLD---------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD--- 220 + + D G R D T + FVTID+ +T DMDDA+ D Sbjct: 180 RYSEPAQKQTKDIARSFKSEQFGAERTDFTEVPFVTIDAETTRDMDDAVALTVNEDSDQA 239 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 + QL VAIADP ++I + S L +++ A + YL G IPMLP EL++ SL VRP Sbjct: 240 RYQLHVAIADPASFIDQHSPLAQSSHRSAQSLYLLGGTIPMLPEELANHCFSLAEGTVRP 299 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE---QV 337 VL+CRM ++ DG I + EF ATI S+ KL Y +V +L+ T D +++ + + Sbjct: 300 VLSCRMDINTDGEIT-HAEFARATIRSRRKLDYQRVGAFLDGTADTYTDNDPQPQIATML 358 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN 397 + LA++ R +R H +V D+ +Y F + ++G++ + R A++IVEEAM+A N Sbjct: 359 KQLAELADLRRRYRETHQIVSSDQAEYAFEVNQQGKICAVHLRERTQAHKIVEEAMLATN 418 Query: 398 ICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL- 456 A + L K G G++ H GF + ALLK + D ++++LDGF L +L Sbjct: 419 YSAGQFLA-KAGKGLFTTHTGFREDRLGEVKALLKEEQIEHD--DIMSLDGFVTLVNKLS 475 Query: 457 DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516 + Q L +RR +E+S + H G+G+ YAT TSPIR++ D+ NH + + ++ Sbjct: 476 NDQEKATLLPALRRMMPTSELSLDAKGHLGIGMPHYATITSPIRRFTDLFNHWAILSELE 535 Query: 517 GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 G +E +++E R+A+R++ WL ++ + G +A+I +++ G Sbjct: 536 GAKFRNANEEYLTKLSENLNNGRLADRELQQWLICQYAESLVGETD--SAKIRIVTQQGF 593 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 RL G FI L + E + T+ + G+ VYK+ DV+ V + V M+ R Sbjct: 594 GARLETQGIDGFI----LFDKKTEKSFDAKRMTLDVGGQ-VYKLEDVVKVKVDSVDMDKR 648 Query: 637 SIIAR 641 I Sbjct: 649 RIAFS 653 >UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH3_9FIRM Length = 688 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 140/617 (22%), Positives = 246/617 (39%), Gaps = 40/617 (6%) Query: 44 YFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDH 103 ++P + K+ D ++ + + ++ LT G + K + D Sbjct: 85 VYVPKNKKMKIFDKDEVLVRL-----KPEPSLIKVFNHGLTNITGVMIVKKKKTFFYSD- 138 Query: 104 PLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWV 163 L R FK+ V ++ ++ + Q + DD V Sbjct: 139 --LDLHCSIRVVNEKEFSFKKRTKVVCQIVKYA----DPLEVRIIQVLGHPDDAGVDISA 192 Query: 164 TLARHNLEKEAPDGVATE--------MLDEGLVREDLTALDFVTIDSASTEDMDDALFAK 215 L + + + + E DE R+D+ L VTID +D DDA+ Sbjct: 193 MLTSNQVRQVFNGKIVKECKRIPAKVQKDELENRKDIRGLLTVTIDGDDAKDFDDAISIV 252 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 L V IAD + ++ E S LD+ A +R + Y+ +PMLP +LS+ +CSL Sbjct: 253 KNEKG-YVLYVHIADVSHYVKENSALDQEAYLRGNSIYVCDRVVPMLPFDLSNGICSLNP 311 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE 335 N R + C M + G + F + I S + Y +V+ L+ E + E Sbjct: 312 NVDRLTITCAMQVDEKGNLL-TYNIFPSVIHSDKRCTYKKVNACLDGDKAILQEYSEVKE 370 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 + L + + + HN + + + + I+ + G +D+ R A +++EE MI Sbjct: 371 LLFTLESLAKLLKKQSHNRGCIDFNTKEAKIIMDKNGYPVDVNVLERGFAEQMIEECMIL 430 Query: 396 ANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVD-AEEVLTLDGFCKLRR 454 AN+C A + +Y VH DP + + + + D + + K Sbjct: 431 ANVCVAHHMHVNKIPSMYRVHENPDPKKVATICTVANSLRIPFDFYPDEVNASQIQKFLE 490 Query: 455 EL-DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 + D L R A HFGL LE Y +TSPIR+Y D++ HR+L A Sbjct: 491 SIQDENAYEVLSMVSLRSMQKARYDAHCLGHFGLALEEYCHFTSPIRRYSDLVVHRMLHA 550 Query: 514 VIKGETATRPQ------DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 E P ++ ++E+ R M ER V D+ A++++ + G F Sbjct: 551 YCFKEQKRTPSNDEKKIEKQAFHISEKERDAIMMERMVNDYKKAQYMEKRVG--QVFEGT 608 Query: 568 IVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET---VYKVTDVI 624 IV + G V + DN +P +H + ++ E+ T+ +KG+T V+++ + Sbjct: 609 IVGVMSFGFFVEM-DNTVEGLVP---VHTLSNDFYDYDED-TMTLKGQTHGKVFQMGMRV 663 Query: 625 DVTIAEVRMETRSIIAR 641 V +V+ E + Sbjct: 664 RVVCTDVQREKGQVTFS 680 >UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9GZQ2_GLUDA Length = 781 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 158/640 (24%), Positives = 249/640 (38%), Gaps = 50/640 (7%) Query: 44 YFIPPPQMKK-VM-HGDRIIAVIHSEK-ERESAEPEELVEPFLTRFVGKVQ--------- 91 F+ P Q + + G+R++A + R + R VG + Sbjct: 132 VFMHPEQKGRPALAPGERVVARLKRLGPGRYEGRTLRRLTDAPGRIVGVFRPTTLYDGPG 191 Query: 92 ------GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYA 145 + +VP K A + E +E A PL G A Sbjct: 192 PLAPPRRHAEAGRLVPADRRAKAEWIIPAGETMGAEAEEVVVAEP----LPLAGSGLKPA 247 Query: 146 ELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD----EGLVREDLTALDFVTID 201 + + D + + H++ + P +E REDL + +TID Sbjct: 248 RIVARLGPMGDARSVSLLAIHTHSIPDQFPAEALSEAERARGVSPEGREDLRDVPLITID 307 Query: 202 SASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPM 261 D DDA++A+ D +LIVAIAD ++ GS LD+ A+ R + Y P +PM Sbjct: 308 GEDARDFDDAVYAEP-DGDGFRLIVAIADVAHYVRPGSALDREARRRGNSVYFPDRVVPM 366 Query: 262 LPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE 321 LP LS+ CSLR E R L + + A G + F + S A+L YDQ + Sbjct: 367 LPEALSNGWCSLRPGEDRGCLFAEIFIDAAGN-KTRHRFGRGIMRSAARLTYDQAQAIVG 425 Query: 322 NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEP 381 N + Q E+ + L + R + D P+ L G + I P Sbjct: 426 NVEESQQETGLPDGLINTLFTAWRALSTARARRGTLDLDVPERVVRLDTSGRITAIEPRP 485 Query: 382 RRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAE 441 R ++R++EE M+ AN+ AA L + +Y +H P A+A+ L G + Sbjct: 486 RHDSHRLIEEFMVLANVAAAEELERRRRPCLYRIHAPPSPERAEAMRDSLSAMGFDLPPP 545 Query: 442 EVLTLDGFCKLRRELDAQPTG-----------FLDSRIRRFQSFAEISTEPGPHFGLGLE 490 L + + I R QS AE S + HFGL L Sbjct: 546 GALRARDLGAVLARAAQGEASGPASGTPVSGTLVSETILRAQSQAEYSPDNIGHFGLALP 605 Query: 491 AYATWTSPIRKYGDMINHRLLKAVIKGETATRP------QDEITVQMAERRRLNRMAERD 544 AYA +TSPIR+Y D++ HR L + P DEI Q++ R +AER+ Sbjct: 606 AYAHFTSPIRRYADLLVHRALIGMGTQPADGMPAADAACLDEIGEQVSTAERRAALAERE 665 Query: 545 VGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS 604 + A +L D+ G + F+ + ++R G V L GA +P L D Sbjct: 666 TTERYVAAWLADRVGAE--FSGHVSGVTRFGAFVTLTQTGATGLVPVSTLPD--DVWTHD 721 Query: 605 QENGTVQIK-GETVYKVTDVIDVTIAEVRMETRSIIARPV 643 ++ T++ + G ++ + V + E T ++ V Sbjct: 722 EKTQTLRGRHGGLALRLGQPVTVRLVEATPVTGGLLFALV 761 >UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUX4_OPITP Length = 833 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 157/683 (22%), Positives = 266/683 (38%), Gaps = 71/683 (10%) Query: 24 GVVKATEKGFGFLEVDA---------QKSYFIPPPQMKKVMHGDRIIAVIHSEKERES-- 72 G ++ G F+ ++A Q + + GDR++ + + + Sbjct: 156 GRIQFRAGGSAFVVLEATGGRPADPSQPPIQVFAEDTDVALPGDRVVVRVFAGRRGRRPG 215 Query: 73 ---AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC--RAARGLNHEFKEGDW 127 E ++E VG ++ + +VPD P + A G+ + GD Sbjct: 216 EKIGGVERVLERGRDTVVGDLRRRGRDYLVVPDDPRFVYEVAVSDPARSGVKPAPQPGDK 275 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 V ++ + D E+ + + ++NL P V E Sbjct: 276 VVVKLHAWNRRHD-PLTGEIESRLGRTHEPQAELLAIFQKYNLVTTFPADVEREAATLPD 334 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 E R D TID +D DDAL + L +++ + IAD + ++ G+ Sbjct: 335 RVHPRELAGRLDYREQPVFTIDPDDAKDFDDALSYEPLHGGDVRVGIHIADVSTYVRPGT 394 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD+ A+ R + YL G IPMLP +LS+ LCSL + R A +T + +G +++ Sbjct: 395 ALDREAQRRGNSTYLVGTVIPMLPEKLSNGLCSLVEGQDRLCKAVFLTFAKNGRLKETT- 453 Query: 300 FFAATIESKAKLVYDQVSD-WLENTGD-----------------------WQPESEAIAE 335 F I S+ +L Y Q E+ D E + Sbjct: 454 FANTAIRSRKRLTYKQAYALMFEHDLDRIRALPLPPKHQTGSTGRALSALSDAELVDLQS 513 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 VR L +I R R H + D P+ + + E+G + +++++EE M+A Sbjct: 514 WVRALWKIASRLRHDRMAHGSLDLDMPETKIFVDEQGYADRLEKIEHDESHQLIEEFMLA 573 Query: 396 ANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE 455 AN AR+ R +Y VH DP D LL T +H ++ + KL R Sbjct: 574 ANEALARLTRTHSLPSLYRVHDEPDPDKLDEYRQLLATFDIH--TGDLTRREELVKLIRT 631 Query: 456 LDAQPTGF-LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 L P G+ L +++ R A HFGL + Y +TSPIR+Y D++ HR+ Sbjct: 632 LSTHPQGYTLRTQLLRSLRKAAYRATADGHFGLNKKDYTHFTSPIRRYADLVVHRVFDFY 691 Query: 515 IKGETATRP-----------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTR 563 + RP + + ++ + AER+ F + + + Sbjct: 692 LVKHQGGRPAHGHTSYNLGHVESLGEHLSLTEINSAEAERESVKVKLLEFFERELAKKKK 751 Query: 564 --FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTV--QIKGETVYK 619 FAA + D+ + G V LV++ F+P H + D+ GT+ + + + Sbjct: 752 TPFAAVVTDVRQNGFFVELVESMTFGFVPT---HTLSDDHYVLNNAGTMFTGRRHKRRFA 808 Query: 620 VTDVIDVTIAEVRMETRSIIARP 642 V D I+V + +V R I RP Sbjct: 809 VNDRIEVVVEKVDRYKRLIDFRP 831 >UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica RepID=Q7UFR0_RHOBA Length = 764 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 141/657 (21%), Positives = 259/657 (39%), Gaps = 45/657 (6%) Query: 18 QTPRAEGVVK-ATEKGFGFLEV---------DAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 T + G + A GFGF+ D + F+P + GD + I Sbjct: 72 PTDQIRGTFRRAMGGGFGFVRPSSGGGNADADVPEDVFVPTGMTAGALEGDLVAVTIEPS 131 Query: 68 KERE-SAEPEELVEPFLTRFVGKVQGKND----------RLAIVPDHPLLKDAIPCRAAR 116 + + E+++ +F G + D + + R Sbjct: 132 RRGGIEGKVVEVLQRARRQFTGTFFSSPQPDQPGSDTIEGPVVYLDGVHYEAPVSVGDVR 191 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 GL ++GD E+ P + A + + + + + + ++ L E + Sbjct: 192 GLP--LQDGDKIFVEIVDFPDEESGGGEAVILERLGSSKNPAIDTLTIMRQYALPDEFSE 249 Query: 177 GVATEMLDEGLV---------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V E ++ R+DLT + +TID D DDA+ + D + +L V Sbjct: 250 DVLDEAREQADAFDDDVVPTDRKDLTDMLTITIDPFDARDFDDAISLQR-EDGRWRLWVH 308 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ G KLD A+ R + YLP IPM+P +S+ L SL+ +R V + Sbjct: 309 IADVSHFVPPGGKLDVEARRRGTSVYLPDRVIPMIPEIISNHLASLQPERMRLVKTVEIE 368 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQVRLLAQICQR 346 + D TI + E A I S + Y+Q+ ++ + +Q + ++I E + + + + Sbjct: 369 MLDDLTITHS-EVHNAAIRSDKRFNYEQIDQFIASPAAFQKDWGDSICELLTHMHTLAMQ 427 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R + D PD + L G+V +++I+EE M+ N A L D Sbjct: 428 IRKRRFKDGALSMDMPDIKLELDRTGKVKGAYQTENTESHQIIEEFMLLGNEAVATWLDD 487 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 466 + ++ +H + L + +K GL D E + L + ++ Sbjct: 488 QELNFLHRIHAPPERRKLRQLTSFVKDLGLGFDNVES-RFEIQAVLDKVAGTTLENAVNF 546 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR---- 522 + + S A H+ L E Y +TSPIR+Y D+ HRL++ +I+ ++ Sbjct: 547 AVLKSMSKAVYGPHREGHYALDKEHYCHFTSPIRRYPDLSVHRLVQRLIEQKSTPDESFA 606 Query: 523 PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVD 582 ++ + ++ R AER++ FLK K G A I + G+ R + Sbjct: 607 ELVKLGHECSDAERNAAQAERELIQLKLLHFLKKKQGE--TLEAVISRVFADGIHARCLK 664 Query: 583 NGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 FIP L + D+ + K +++ D + V I +V ++ R + Sbjct: 665 LPVDGFIPVTELPS--DQYRFERRGQSLTGFKSGNRFRLGDHLTVRIGKVDLQDRQL 719 >UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC1_9ACTN Length = 711 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 149/697 (21%), Positives = 242/697 (34%), Gaps = 77/697 (11%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE-KERESAEP 75 + P G V+ E ++ + Y + +++M GD + I + A Sbjct: 21 ERRPSLTGRVQLHEHS-AYVITENG-DYKVMGRGKREIMDGDTVAVSIKNSPHGERRAVI 78 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA--IPCRAARGLNHEFKEGDWAVAEMR 133 E +VE VG Q I P LK I GD VA + Sbjct: 79 EGVVERAAISVVGTYQTAGPLGVIEPLDSRLKADFFILPEDTSADRLGVHPGDAVVARIL 138 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------- 184 +P + + + + I D + +AR+ P+ E Sbjct: 139 TYPTRLESGAV-TIERRIGGDDAPDLGVQYVMARYGYTDSYPEAALDEAEGLSLDVSAAL 197 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 + +R DL +TID D DDA+ + P+ +L V IAD + ++A +D Sbjct: 198 KDPLRRDLRDRFVITIDPVDARDFDDAVSLERTPEGGYRLGVHIADVSHYVAWDGHIDLE 257 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A+ R + YL +PMLP LS+DLCSLR +E R + L A G + + + + + Sbjct: 258 ARHRTTSVYLADRVLPMLPERLSNDLCSLRPDEDRLAFTVDIELDAQGRVR-HYDPYPSV 316 Query: 305 IESKAKLVYDQVSDWLENTGDWQ----------------------PESEAIAEQVR---- 338 I S+ ++ YD L G + A E R Sbjct: 317 IRSRVRMDYDGAEALLVRAGAVEYSVLEGAAEDVAAAEASREEALERGLACEEAARGYNV 376 Query: 339 -------LLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEE 391 ++ + R R V D + R +L E G + IVA R A ++EE Sbjct: 377 DLGDFLVAANELAELRRRIRRARGSVDFDTAEIRALLDEDGVPVQIVARERSCATSLIEE 436 Query: 392 AMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV----LTLD 447 AM+ AN C A L D+ Y VH P + A L G+ D + D Sbjct: 437 AMLLANECVAEWLADRDIEACYRVHEDPSPDSLHGAAVALAQLGIIDDRRAAGIALGSPD 496 Query: 448 GFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMI 506 +++ + R A HF L Y +TSPIR+Y D++ Sbjct: 497 ELQAAVDAAAGTANAPLVNTLLLRSMQRALYKPRNEGHFALAAPCYCHFTSPIRRYPDLV 556 Query: 507 NHRLLKAVIKG--------------------ETATRPQDEITVQMAERRRLNRMAERDVG 546 HR+LK + E+ R +I ++ R A Sbjct: 557 VHRVLKLQLAYEQLGGKDALVRTPRLIGKGRESLPRILPQICRACSDAERAADAASHATQ 616 Query: 547 DWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE 606 A++ +D+ G R+A + +S G+ VRL + L E Sbjct: 617 KIKIAQYYEDRLGE--RYAGTVSWVSSMGLFVRLDLTQVEGLVSIKSLGNEWFEF-DEDA 673 Query: 607 NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 T Y++ + + ++ V + + + Sbjct: 674 LTLTGADTGTRYELGQRVIIEVSRVNTTRGHLDFKLI 710 >UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Verrucomicrobia RepID=B5JNV1_9BACT Length = 861 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 151/704 (21%), Positives = 265/704 (37%), Gaps = 82/704 (11%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEVDAQ------KSYFIPPPQMKKVMHGDRIIAVIHS-- 66 + G +K +KG L DA+ K+ I MH D+++ + Sbjct: 61 IPKDVDLVTGTIKFRQKGSAILIPDAKAGEPKPKAIEIAAEDTSVAMHDDKVVVRLADAP 120 Query: 67 ------EKERES----------AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI 110 ++ R+ + + VG + + PD P + I Sbjct: 121 PNEPVWKRGRKQASAYQPTGPFGRVIRIQKRARETMVGTLCKTRFFHYVAPDDPRIIHDI 180 Query: 111 --PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARH 168 P L+ G V ++ + + EL + + L ++ Sbjct: 181 YVPPPEESRLDPLPTVGSKVVVKLHEWEQR-HVNPEGELIANLGKTHEPQAELMGVLHKY 239 Query: 169 NLEKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220 NL+ E P V E + + R DL TID +D DDA+ + D Sbjct: 240 NLDPEFPPEVMKEAESVPSKVTEKQLIGRRDLRKAFTFTIDPDDAKDFDDAISLEYPDDK 299 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 +++ + IAD A++ G+KLD A R + YL G IPMLPR LS+ +CSL +E R Sbjct: 300 HVRVGIHIADVAAYVRGGTKLDTEAFNRGNSTYLVGIVIPMLPRSLSNGICSLVEDEDRL 359 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDW-------------- 326 + +T + G I + +++ I S +L Y Q L+ Sbjct: 360 TKSVFVTFNKKGDIVE-VDYANTVIRSNKRLTYKQAYTLLKENDLQAARDLKLPPAHQTG 418 Query: 327 ----------QPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLD 376 E + + +R L I + R H + D + + + EKG Sbjct: 419 STGRALNTLSDAELGKLQKGIRELWSIASKLRAARFKHGSLNLDMEETKIFVDEKGYADR 478 Query: 377 IVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGL 436 + +++++EE M+ AN C A+ ++ IY VH D + L + T G+ Sbjct: 479 LEKIVNDESHQLIEEYMLLANECVAKEMKRNRLPCIYRVHEDPDEERLNDLREYMATWGI 538 Query: 437 HVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATW 495 ++ KL L A P L +++ R A + P H+GL Y + Sbjct: 539 E--TSDLNNRKDLNKLLETLSAHPQSRLLRTQVLRSLKKACYKSTPDGHYGLCKNDYLHF 596 Query: 496 TSPIRKYGDMINHRLLKAVI---KGETATR---------PQDEITVQMAERRRLNRMAER 543 TSPIR+Y D++ HR+ + +GE A + +++ + AER Sbjct: 597 TSPIRRYSDLVTHRVFNHFLVKVRGEPALNESTLRYNASKASSVADHLSQTEVNSVEAER 656 Query: 544 DVGDWLYARFLKDKAGTDTR--FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 + F + + + F A I ++ GM + L ++ A + + A+RD+L Sbjct: 657 ESIKVKLLEFFERELDKKKKTAFDAIITEVRNHGMFIELKESNAFGMVH---ISALRDDL 713 Query: 602 VCSQENGT--VQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 +GT + + + Y + +I V + +V R + R Sbjct: 714 YRLNASGTALIGRRKKNAYSLGQMIQVEVHKVDRFKRQVDFRLC 757 >UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribonucleases n=4 Tax=Mollicutes RepID=Q2ST22_MYCCT Length = 704 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 139/675 (20%), Positives = 283/675 (41%), Gaps = 47/675 (6%) Query: 3 QDNPLLAQLKQQLHS-QTPRAEGVVKATEKGFGFLEVDA---QKSYFIPPPQMKKVMHGD 58 ++N + L+ ++ +G +K KGFGF+ + +FI + +H D Sbjct: 42 KNNKITISLENNIYLLDQIYKKGTIKLNPKGFGFINDINKINDEDHFIAGVDLNNSIHQD 101 Query: 59 RIIAVIHSEKE-RESAEPEELVEPFLTRFVGKVQGK--NDRLAIVPDHPLLKDAIPCRAA 115 ++ ++ E++ R A +L++ +G++ L +P+ D+ Sbjct: 102 EVVYILKQEEDNRLKAIVIDLIKRNKVYLIGEINRSFDKRFLDFIPNDKSF-DSFRFVIV 160 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 +++E + A++ +R + L + I +++ Sbjct: 161 NKNEFKYEEFNIIKAKIIS---CKERKIFIRLIRIIGNSKKASDRILAIAEEFDIKTSFD 217 Query: 176 DGVAT----------EMLDEGLVRED--LTALDFVTIDSASTEDMDDALFAKALPDDKLQ 223 ++ E L R++ L VTID ++D+DDA+ + L ++ + Sbjct: 218 KQTLDNAKQINLSTDKLEKEFLKRQNNSLVNKTIVTIDGIDSKDLDDAICVEKLENNNYK 277 Query: 224 LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA 283 L VAIAD + ++ + LDK A +R + YL IPMLP LSDDLCSL N + V Sbjct: 278 LFVAIADVSYFVRYKTSLDKEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFV 337 Query: 284 CRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQI 343 C M + + + + + + I SKA+L YD+V+++ + + + + ++ Sbjct: 338 CEMEFDNNANMLNK-KVYESVIISKARLNYDEVNNYF--KTKTWTHDDKTKKMLDIAYEL 394 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 ++ + + D + + IL + V+DI + A +++E+ M++ N A + Sbjct: 395 YKKLENLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVAEL 454 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLD------GFCKLRREL- 456 + K +Y H D LKT G++ LD +++ ++ Sbjct: 455 IYQKDLPFLYRNHNKPDEDELINWYKSLKTFGINPKLTNKQVLDPIFINHTLSQIKEQIK 514 Query: 457 DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI- 515 D L+ + R+ A+ E HFGL + Y +TSPIR+Y D++ HR LK + Sbjct: 515 DETEVELLNISLLRYMDKAKYGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQYLI 574 Query: 516 -------KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 E ++++ + + + ER+V ++ +K + + A I Sbjct: 575 TKDLEKTSLENNANYVNKVSNIINDTETKSVECEREVIKACMCEYMLNKV--NNTYTATI 632 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 + + G+ ++L DN + +++ +LV + N + T Y++ + V + Sbjct: 633 SAVLKFGIFIQL-DNLVEGLVHISNMNS---DLVYDETNRILIKPDNTYYRMGQKVKVKL 688 Query: 629 AEVRMETRSIIARPV 643 V ++ R+I + Sbjct: 689 INVDIKKRTIDFVLI 703 >UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis MED297 RepID=A4BI97_9GAMM Length = 647 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 207/649 (31%), Positives = 304/649 (46%), Gaps = 30/649 (4%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK-SYFIPPPQMKKVMHG 57 M D L L LK + + EG VK T K FGF+ A +F+PP +M +V G Sbjct: 11 MLDDKSLAVLQSLKSDIKAAKTLYEGTVKGTGKKFGFVVNAADGSEHFLPPDEMSRVFPG 70 Query: 58 DRIIAVIHSEK-ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 D + I + + AE EEL+ L F G + + P + + Sbjct: 71 DEVRFTIVDQDDGKTKAELEELIRSPLDEFNGVFFVRGKAQGVEPFDSAFGGWLFVPPKQ 130 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 D A++ RHP ++ AE+ + + D++ + V LA + + D Sbjct: 131 --TSHANNKDLVRAKVVRHPWDTGKA-QAEVLKSLGSADNNRSWYSVALAEQGIPEAFSD 187 Query: 177 G-------VATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 +A + R+DLT L FVTID+AST+DMDDALFA+ + QL VAIA Sbjct: 188 AELKQAKALAEAGPETDPSRQDLTDLPFVTIDAASTKDMDDALFARPTENG-WQLSVAIA 246 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D +A+I S+LDKAA+ R T YLPG +PMLP L+D SL +E RP + +M + Sbjct: 247 DASAYIPLDSELDKAAQKRLTTTYLPGLTLPMLPEILADSAMSLVPDETRPAMIFQMQID 306 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGE 349 DG + D E F AT+ S+AKL YD V+ W EN E+ E ++ L Q Sbjct: 307 RDGNVSD-FEIFPATVRSQAKLAYDDVAHWFENNA----IPESHQENLQALNDATQALAS 361 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 WR +A KDR DYR + + +V DIV E + A +VEEAMI N +A+ L+D+ Sbjct: 362 WRRKNANPMKDRVDYRIRVDDHFQVTDIVQEHKNPARALVEEAMIVTNYQSAQWLQDQ-- 419 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 G++ H+GF P L LL+ + V L F K+ L + ++ Sbjct: 420 PGLFMCHLGFKPDRETELKGLLRDYTPDVAELNGHDLADFRKIMAASQTIDFP-LYAVLQ 478 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV 529 + S E PHFGLGL Y TSPIRKY D+ HRL+KA + D Sbjct: 479 KRFDRGFWSREAQPHFGLGLSRYTNVTSPIRKYSDLCMHRLIKAKLASRALP-DIDHALS 537 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + ER ++R A + + + L ++L + + + IV ++ + VRL D GA+ + Sbjct: 538 LLNERGNVSRFAAQKIENRLRYQWLSQQ--PEQTYRGTIVHLNANNLMVRLDDCGAVGQV 595 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L +DE ++ E Y++ + V IA V E + Sbjct: 596 D---LRKRKDEFSYDPLRMMLKF-EEFQYQLEQEVTVKIASVSAEQLKL 640 >UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8GZL3_CAUCN Length = 760 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 158/603 (26%), Positives = 254/603 (42%), Gaps = 29/603 (4%) Query: 57 GDRIIAVIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 GDR++ E A+ + + + +G ++ + + P K+++ + Sbjct: 128 GDRLLVRFERLETGEFEAKLIKKLGQSAHKILGVIRKHRREVRVEPVDRKSKESLVLDPS 187 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + H+FKEGD +A++ H + ++ + + +D + + H + Sbjct: 188 --VAHDFKEGDLVLAQVGTHGGRYGPKP-GKVLEVVGTENDPRAASLIAIHSHGIPTGFS 244 Query: 176 DGVA----TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVA 227 + T + REDL L FVTID D DDA++A D + VA Sbjct: 245 EAAEAEAKTAVEPTLAGREDLRDLPFVTIDPVDARDHDDAVYAHPDEDETNKGGFVVWVA 304 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD A++ GS LD+ A+ + + Y P PMLP LS+ LCSLR +E R LA RM Sbjct: 305 IADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLRESENRATLAVRMV 364 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 G + + F + S AKL Y+Q ++ D + + ++ L + Sbjct: 365 FDKSGRKKGH-RFVRGLMRSAAKLSYEQAQAAIDGQPDDKA-GPLLDPILKPLWDAYRTM 422 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + + + + R I+ + GE+ I A++++EE M+ AN+CAA L K Sbjct: 423 KIGRDARSPLAIESDERRIII-KGGEITSITKRASLEAHKLIEEMMVQANVCAAESLEAK 481 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDS 466 IY VH LA L+T + E F KL E P ++ Sbjct: 482 RSPLIYRVHDTPSLEKVQNLADFLQTLEIRWSKGEAPQTARFNKLLEETRESPNAAIINE 541 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHR-LLKAVIKGETATRPQD 525 + R Q A S + HFGL L YA +TSPIR+Y D+I HR L++A+ G QD Sbjct: 542 VVLRTQMQAHYSADNIGHFGLNLAKYAHFTSPIRRYADLIVHRGLIRALGLGTDGLTDQD 601 Query: 526 -----EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 + + R AERD D A FL D+ G F I ++R G+ ++L Sbjct: 602 IAQIKDTAEVITHAERRAMAAERDATDRYIAAFLADRVG--ATFEGRITGVTRFGLFIKL 659 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 D GA +P L E + V + + + ++V + E T + Sbjct: 660 ADTGADGLVPVSSLG---QEFFVHDDKMHALVGERTGKRWPLGLSVEVKLVEATPVTGGL 716 Query: 639 IAR 641 + Sbjct: 717 LFE 719 >UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID=B0T0I6_CAUSK Length = 777 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 156/606 (25%), Positives = 251/606 (41%), Gaps = 33/606 (5%) Query: 59 RIIAVIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 R++ E A + + + +G ++ + P K+++ Sbjct: 141 RLLVRFEQLESGETEARLIKRLGQSAHKVLGVIRKVRRETRVEPVDRKSKESLLLNEQE- 199 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 + K+GD +A++ + + ++ + + DD + + H + + Sbjct: 200 -AKDLKDGDLVLAQVGTSSGRYG-PKFGKVLEVVGNEDDPRAASLIAIHSHGIPTGFSED 257 Query: 178 VATEMLDEGLV----REDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVAIA 229 E R+DL L FVTID D DDA++A PD + VAIA Sbjct: 258 AEAEAHAAKPPTLEGRDDLRDLPFVTIDPVDARDHDDAVYAHPDPDAGNVGGWIVWVAIA 317 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D A++ GS LD+ A+ + + Y P PMLP LS+ LCSLR E R LA RM Sbjct: 318 DVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLREGENRATLAVRMVFD 377 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTG-----DWQPESEAIAEQVRLLAQIC 344 DG + + +F + S AKL Y+Q ++ D + +R L Sbjct: 378 NDGR-KKSHKFVRGLMRSAAKLSYEQAQAAIDGIAPPDGQDGDKAGPLLDPILRPLWAAF 436 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + G+ R + + + + R I+ + GE+ I A++++EE MI AN+CAA L Sbjct: 437 RLMGKGRAQRSPLGIESDERRIII-KDGEIQSITRRASLEAHKLIEEMMIQANVCAAESL 495 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGF 463 K IY VH +L L+T + E T F KL + P Sbjct: 496 EAKRTPLIYRVHDTPSQEKVMSLVEFLQTIEVKWSKGEAPTTARFNKLLDDTRESPHAAI 555 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-GETATR 522 ++ + R Q A S++ HFGL L YA +TSPIR+Y D+I HR L +K G+ Sbjct: 556 INEVVLRTQMQAHYSSDNLGHFGLNLARYAHFTSPIRRYADLIVHRALIRALKLGDDGLT 615 Query: 523 PQD-----EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 QD + + R AERD D A FL D+ G F+ I ++R G+ Sbjct: 616 DQDISQIKDTAEVITHAERRAMAAERDATDRYIAAFLSDRVG--ATFSGRITGVTRFGLF 673 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMET 635 V+L + GA +P L +E + V + + + ++V + E T Sbjct: 674 VKLDETGADGLVPVSTLG---EEYFVHDDRMHALVGERTGKRFPLGLAVEVKLREATPVT 730 Query: 636 RSIIAR 641 ++ Sbjct: 731 GGLLFE 736 >UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE7_RHORT Length = 842 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 159/602 (26%), Positives = 250/602 (41%), Gaps = 29/602 (4%) Query: 57 GDRIIAVIHSEKE-RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 GDRI+A + + R A + +R +G + D L + P + +D Sbjct: 173 GDRILARLTRIGDARYDARTIRRLAAAPSRLLGVLALARDGLRLRPTNRRDRDEYLVAPE 232 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + G+ AE+ P + A++ + + + V + H++ + P Sbjct: 233 --DAGGAEPGELVEAELL--PSRRLGLRRAKVIERLGGREGPRSISLVVVHSHDIPVDFP 288 Query: 176 DGVATEMLD----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVA 227 E + REDL A+ VTID D DDA+FA+ D + +VA Sbjct: 289 PEALAEAEAAVGVDLRGREDLRAVPLVTIDGEDARDFDDAVFAEPDDDPANPGGWRALVA 348 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD ++ G+ LDKAA+ R + Y P +PMLP LS+ CSLR NE R LA M Sbjct: 349 IADVAHYVRIGAALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNEDRGCLAVWMI 408 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 A+G + F + S A+L Y QV + D + + L + Q Sbjct: 409 FDAEGNKLRH-RFLRGLMRSAARLTYTQVQAARDGHADDLT-APLQERVIAPLYGVFQAL 466 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + D P+ + +L + GEV I R +++++EE MIAAN+ AA L +K Sbjct: 467 LGARSRRGTLELDLPERKVVLDDGGEVARIEPRLRFDSHKLIEELMIAANVSAAETLEEK 526 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDS 466 +Y VH P AL L++ + + F + + P ++ Sbjct: 527 RRPCMYRVHDQPAPDKLVALGEFLESLDIPFHKGSINRSGQFNGVLKAARGTPHEHMVNE 586 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI----KGETATR 522 + R Q+ AE S + HFGL L YA +TSPIR+Y D++ HR L A + G Sbjct: 587 VVLRSQAQAEYSPDNIGHFGLALRRYAHFTSPIRRYADLLVHRALIAGLGLGDDGLRPGA 646 Query: 523 PQD--EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 +D E + R AERD + FL K G FA I ++R G+ V L Sbjct: 647 EEDFVETAAHITATERRAAQAERDAVNRYTVSFLAAKVG--ATFAGRINGVTRAGLFVTL 704 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEVRMETRSI 638 D GA IP L ++ + + + + ++V + E + + Sbjct: 705 EDTGADGLIPIGSLP---NDYYVHDDAHHCLRGQRDGLEFHLGAPVEVLLREANPVSGGL 761 Query: 639 IA 640 + Sbjct: 762 VF 763 >UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID=RNR_MYCPU Length = 725 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 144/629 (22%), Positives = 269/629 (42%), Gaps = 38/629 (6%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS---EKERESA 73 ++ + +G+ K + + F F+E ++SYF+ ++ + A+++ EK+++ A Sbjct: 59 NEIKKIQGIFKQSNRNFAFIETADEQSYFVAKAHFNGAINSFEVEAIVYESPFEKDKKYA 118 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 +++++ +G ++ N + + + N + +E D + + Sbjct: 119 VVKKILKNTHPEIIGFIKISNGIKYF---NAFEESFRSYKFFVDQNIDVEEDDVILVVVE 175 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE--------MLDE 185 + D+ Y + ++ +F + L + + P+ V E + + Sbjct: 176 KI---VDQKIYVNFVKKVSTLKSNFYQIDIVLEKSKTIIDFPEDVLDESALIEDHVIEKD 232 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 R+DL +TID T+D DDA++ + D L V IAD ++ E S +DK A Sbjct: 233 YQNRKDLRDKLIITIDGEDTKDFDDAIYVEKNKD-HFLLSVHIADVAHYVKENSAIDKEA 291 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 RA + YLP IPMLP +LS+ +CSL R V++ + + G E + I Sbjct: 292 LRRATSIYLPHMVIPMLPEKLSNGICSLNPGVDRLVMSIDIFIDFQGNTI-KTELYEGII 350 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 SK +L Y+QV+D+ N P E + L++I + + + + + + + Sbjct: 351 NSKHRLTYNQVNDFYNNKIKLDPNLEKMLNDSLELSKILENYKK---DEGYINLEIEESK 407 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 IL ++G+ + I R ++ ++E M+ AN A + IY VH + Sbjct: 408 VILDKEGKTVGIKVIQRGLSEVLIENFMVRANEAVAWKMNKLKLPSIYRVHDNPSIESLV 467 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA--QPTGFLDSRIRRFQSFAEISTEPGP 483 LKT G+ D ++ + F ++ Q F+ + R A S + Sbjct: 468 LFEKTLKTLGIDFDTPKITSPKAFSDSFEKIKQNYQIDNFVKLMVLRTMEKAIYSDKNIG 527 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD--------EITVQMAERR 535 HFGL Y+ +TSPIR+Y D+ HRL+K ++ ++ + + +++VQ +++ Sbjct: 528 HFGLASSYYSHFTSPIRRYPDLQLHRLIKQMVFDKSNLKEKKNHFSLILSDVSVQSSKKE 587 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 ER + D A + + K G + A+IV I GM V D I L Sbjct: 588 VEAVSIERQINDIKKAEYYESKIGKSLK--AQIVSILSFGMFVEFED-KVSGLIHISNLL 644 Query: 596 AVRDELVCSQENGTVQIKGETVYKVTDVI 624 E E+G + +T YK+ I Sbjct: 645 G---EDFQVSEDGLLISSNKTKYKLGQEI 670 >UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA Length = 721 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 149/657 (22%), Positives = 256/657 (38%), Gaps = 48/657 (7%) Query: 23 EGVVKATEKGFGFLEVDAQK-SYFIPPPQMKKVMHGDRIIAVIHSEKERE---SAEPEEL 78 +G++ KG GF++ D + Y++ + + D + V ++ + A E+ Sbjct: 77 QGIITINSKGDGFIKEDNTEIEYYVNKKYLNGALKKDSVKFVKLKKEPKNNLQDAAVIEI 136 Query: 79 VEPFLTRFVGKVQGK-NDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPL 137 V +VG+ N I D PL I + GL G + ++ Sbjct: 137 VGHAKDHYVGQFITLPNGGYYIFVDDPLFYLNINLKDTTGL----VNGHKILFKIISQTT 192 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVR 189 K AEL I +D + + ++ V + +R Sbjct: 193 KD---AIAELVHIIGHKNDVGSDVLSIVYDNGIDPTFDPQVVDLASKLEFYVDEHQNKIR 249 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 + + ++ID ++D+DDA++ K L D + L ++IAD + ++ + LD A R Sbjct: 250 RSIIDREIISIDPVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTILDADAFKRG 309 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 + YL IPMLP +S+++CSL E R + C M + DG I + + A +++ Sbjct: 310 TSTYLVDRVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWK-DVYPAIMKNYR 368 Query: 310 KLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG 369 ++ YD+V+D+ E ++ + + E + ++ + V D + + IL Sbjct: 369 QMSYDEVNDFYEGKSRFESATLTMKEMLLEAKELHHILRNKKIKDGYVDFDIKEPKIILD 428 Query: 370 EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG----------FGIYNVHMGF 419 E G +DI R+ A +VE+ MIAAN + + IY VH Sbjct: 429 ETGVPIDIKIYERKTAQMMVEDFMIAANEAVTMFAEEHMDKTLKEFNLEMPFIYRVHDKP 488 Query: 420 DPANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI 477 N K ++ D E + L+ + + + R + A Sbjct: 489 SIINLQKFEIEAKKLSFNISHDFENIQPNTISNWLKMNDNHVNLPLISKLLLRSMAKASY 548 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE---------IT 528 HFGL + Y +TSPIR+Y D+I HRLL I + + IT Sbjct: 549 EIINTGHFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSYTDKQRVELVNKLKLIT 608 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + + + ERDV +A ++ G + F + +S G+ V L +N Sbjct: 609 EESNKNEIIAVKTERDVNAAKFAEYMNLHIGKE--FIGVVTTVSSFGVFVEL-ENTIEGL 665 Query: 589 IPAPFLHAVRDELVCSQENGT-VQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 I L D EN T V K + + V + + V + E TR I VA Sbjct: 666 IRIKNLKD--DFYDFIPENMTLVGQKRKKIITVGNKVRVRVIEANKLTRKIDFELVA 720 >UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J794_MYCCR Length = 696 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 145/639 (22%), Positives = 268/639 (41%), Gaps = 33/639 (5%) Query: 24 GVVKATEKGFGFLE----VDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERES---AEPE 76 G+ ++ + FGF+E ++ + F+P + GD + I+ + + Sbjct: 67 GIYRSKQATFGFVEDKDNPQSENNIFVPAKFSANSLEGDEVRVNIYKDSLKPEQKYGVIT 126 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR-GLNHEFKEGDWAVAEMRRH 135 +++ L +GK+ L P + L + R + K GD+ ++ + Sbjct: 127 KILHRNLKFLIGKIVENGTFLDFEPIN--LNTKVLFRWQNPSMTSSLKSGDFVKVKIVDY 184 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE-------MLDEGLV 188 R L Q I +HF+ + + + + V E + Sbjct: 185 Q---KRILKISLIQKIGHESEHFLNVKIPIIDSGVSTIFNEEVIQESKQIPQEIKSIDPD 241 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R DL +TID T+D DDA+ + ++ L V IAD + ++ E S LD AK R Sbjct: 242 RIDLRNEVVITIDGDDTKDFDDAISIE-TKENNYILKVHIADVSYYVTEDSALDLEAKAR 300 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLP IPMLP LS+ +CSL N R + + +G +++ + + I S Sbjct: 301 GTSIYLPHIVIPMLPESLSNGICSLNPNVDRYTITMEALIDKNGQNL-SVKIYPSVIRSY 359 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 +L Y QV+++ +N + + ++ ++ Q +++ N V + + + IL Sbjct: 360 KRLTYHQVNEFFDNKLSF--GDPKLENLLKNALKLGQILRKYKENQGYVDLEIDESKIIL 417 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 E+G I + R ++ I+E+ M+ AN ++ L D +Y VH D L Sbjct: 418 DEQGYTERIEIKERGLSENIIEDFMVRANENVSKYLADHNFPNLYRVHNKPDSQRILQLN 477 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLDSRIRRFQSFAEISTEPGPHFGL 487 ++K GL + + F ++ + Q F+ I R A S HFGL Sbjct: 478 QIIKNLGLEIQIPYNVDSKSFADFVNQIKNKQNDNFIKIAILRTMQKAIYSDVNEGHFGL 537 Query: 488 GLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--TRPQDEITVQMAERRRLNRMA---E 542 + Y+ +TSPIR+Y D+I HR+++ I + T + + ++ + L + A E Sbjct: 538 ASKFYSHFTSPIRRYPDLILHRIIRHFIFNKNTDITHFNNILAIEASSTTELEQKAFVLE 597 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELV 602 R + A ++ G F A+I I + G V + + A + L +++ Sbjct: 598 RKIVGIKKAEYINKHIGKS--FNAQINSILKFGFFVEI-EGIFDALVGVKSLPDNDEDVY 654 Query: 603 CSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 E+G + +K+ +++VTI EV + A+ Sbjct: 655 NVSEDGFSISNSKFEFKLGQIVNVTITEVDTWNGKVSAK 693 >UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQK5_9SYNE Length = 779 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 146/712 (20%), Positives = 267/712 (37%), Gaps = 86/712 (12%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 K + EG ++ + KGF F D + ++ Q+ +GDR++ + + Sbjct: 57 KYRKIENEDVIEGKLRCSSKGFCFAIQDEEGADDIYVRESQLNTAWNGDRVLVQVTKDGS 116 Query: 70 RE---SAEPEELVEPFLTRFVGKVQGKN---DRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 R E + ++E + KV+ D+ +P L + + E Sbjct: 117 RRRSPEGEVKLILERANESVLAKVKAAETAADKFKAIPLDDRLLFELDIAESEEDLSEA- 175 Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM- 182 E+ R+P+ ++++ + + + +H+L + + V Sbjct: 176 IDHLIHVEITRYPI-AQHPPQGKVSRILGSDAEDAADVDIVYCKHDLPRIFSEEVFIAAR 234 Query: 183 -------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 + R DLT +TID ++ + +DDA+ D +L + ++D ++ Sbjct: 235 GLPNRVRKSDIKGRVDLTEHAALTIDGSNAKVIDDAISLDITDDGYRRLGIHVSDVAHYV 294 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 +D+ A+ R YL +PMLP + + LC+L ++ R ++ +T+ DG + Sbjct: 295 QPNDVIDRTARSRGMAVYLGDEIVPMLPPPIPNALCALVPDKDRLAISILITMDDDGQVL 354 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQ-----------PESEAIAEQVRLLAQIC 344 + E + I+ +L YDQ L D + E E + + + L Q+ Sbjct: 355 E-YEIQPSVIQVSHQLTYDQAQAILVREEDEELEKLGFSPDDIEEFEPVMDLIDSLYQLS 413 Query: 345 QRRGEWRHNHALVFKDRPD---------------YRFILGEKGEVLDIVAEPRRIANRIV 389 Q + RH + P +F ++G +V A IV Sbjct: 414 QEVKQRRHERGSFELNLPQHEFPPEAEELAEYLSPKFQYDDEGSFGAMVVSDHMPARIIV 473 Query: 390 EEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV--LTLD 447 E M+ AN AR +++ G+Y VH + A+ L L + + E+V + Sbjct: 474 TEFMLLANQLVARHIKELGIPGLYRVHRTPELADVQELVKLANNMEIDLQLEDVEQVAPS 533 Query: 448 GFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPGPHFGLGL-EAYATWTSPIRKYGDM 505 + + A + L + A S PGPHFGL + +AY + SP+R+Y D+ Sbjct: 534 DYRNFTEQFKASKSEKVLTYLLLATLKPALYSARPGPHFGLAIDDAYTHFASPVRRYPDL 593 Query: 506 INHRLLKAVIKG---ETATRPQDEITVQMA------------------------------ 532 + HRLL AV K +TR +D + ++ + Sbjct: 594 LVHRLLHAVFKHGRDRRSTRSKDRVNLRHSSCHGKINWSVLPPAVQQEMEEQLTRAPIKL 653 Query: 533 -ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 ER R+ + AE D+ A F++ G F I + G V L + + Sbjct: 654 TERERITQDAESDLEGLKKAAFMQAHTGE--VFHGLITGVQSYGFFVELEELLVEGLVHV 711 Query: 592 PFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 L E Q+ V K Y++ D ++V + V + I V Sbjct: 712 SSLKDDWYEYRSRQQK-LVGRKNRQQYRLGDHVEVEVKSVDYYRQQIDLVAV 762 >UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q28VI9_JANSC Length = 778 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 161/600 (26%), Positives = 249/600 (41%), Gaps = 34/600 (5%) Query: 57 GDRIIAVIHS------EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI 110 GDRI+A + + E + +A+ + + +G + + I P Sbjct: 125 GDRILAKLFAVEGSDAEDHQYTAKLIRKIGTNPRKILGIFRKGAEGGVITPISKGSDKEW 184 Query: 111 PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL 170 RA G H K+G+ E+ P + A +T + + + H + Sbjct: 185 QVRA--GDTHGAKDGELVEGELA-GPKARMGAPRARITTRVGDPGAARAVSLIAIHEHGI 241 Query: 171 EKEAPDGVATEMLDEGLV----REDLTALDFVTIDSASTEDMDDALFAKALPD----DKL 222 P+ V E REDL L +TID A D DDA +A A D Sbjct: 242 PDSFPNKVVAEADAAKPAGLTGREDLRDLPLITIDPADARDHDDACYAHADEDPGNKGGH 301 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 + VAIAD ++ S LD+ A+ R + Y P +PMLP LS DLCSL R V+ Sbjct: 302 VIWVAIADVAHYVTPDSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRAVI 361 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ 342 A RM + A G + F + S A L Y++ E T + + I +R L Sbjct: 362 AVRMVIDARGEKIGHT-FHRGLMTSVASLSYEEAQAAQEGTLS-ERTAPLIEGSIRPLFA 419 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 R + D P+ R L + G V + + R A+R++EE M+ AN+ AA Sbjct: 420 AYDALKIARAKRQPLELDLPERRIELDDAGNVTSVAFKDRLDAHRLIEEFMVLANVAAAE 479 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG 462 L K ++ VH P +AL + + GL + +VL L + + Sbjct: 480 TLIAKRTPLLFRVHEEPSPEKLEALREVAASAGLTLAKGQVLQTRHLNALLKAAGEDTSE 539 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV-------- 514 + R A + E HFGL L++YA +TSPIR+Y D+I HR L A Sbjct: 540 LISISTLRSMQQAYYNPENFGHFGLALKSYAHFTSPIRRYADLIVHRALIAAHGWGPDAK 599 Query: 515 IKGETATRPQ--DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 I G + + ++ ++ R + +AERD D A +L D+ G + F I I+ Sbjct: 600 IDGLSPDEIERLEDTAKLISGTERRSMVAERDTSDRYLAAYLSDRVGAE--FGGRISGIA 657 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT-VQIKGETVYKVTDVIDVTIAEV 631 R G+ V+L + GA +P L ++ E T + T+ + D + V +AE Sbjct: 658 RFGVFVKLDETGADGLLPMRALG--QEYFHFDAEAQTLMGADTGTMISIGDRVLVKLAEA 715 >UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WY09_9DELT Length = 803 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 160/665 (24%), Positives = 245/665 (36%), Gaps = 50/665 (7%) Query: 21 RAEGVVKATEKGFG-FLEVDA------QKSYFIPPPQMKKVMHGDRIIAVI----HSEKE 69 + G A G G F+ FI P Q H D + + H+ + Sbjct: 78 QIRGRYMALRSGAGGFVTPLGDNGQVTGPDIFIHPLQAGDAWHQDMVRVALSPRSHARGK 137 Query: 70 RESAEPEELVEPFLTRF-VGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 + E++E V + R P + + + G Sbjct: 138 SQEGRIVEVLERGCREVPVHVIHVTGRRALCRPADSRMPFDVSVELPEDMERPS-GGSLL 196 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------ 182 + + + A L Q + DD V + H + +E P V E Sbjct: 197 LVAPEKR--LAADLWQARLLQSVGREDDIAVQEDLVKLNHEVPREFPPRVQAEADALPSA 254 Query: 183 --LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 + RED+ AL VTID A D DDA+ +A P L VAIAD + ++ S Sbjct: 255 PRHADMAGREDVRALPLVTIDGADARDFDDAVQVEARPGGGWLLRVAIADVSHYVRPRSA 314 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD A R + Y P PMLP L D LCSLR +E R + + SA G F Sbjct: 315 LDTEALARGNSWYFPTSVEPMLPPALCDGLCSLRPDEDRLAMLAEIPFSATGQ-PGKPRF 373 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQ-------PESEAIAEQVRLLAQICQRRGEWRHN 353 A + S A+L YDQV L + + P + + + + ++ + E R Sbjct: 374 AAVVMRSAARLTYDQVKACLLDRDEQARAALAAGPRGQEVLDMLETAFELYRCLREARQR 433 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL--------- 404 + D P+ + +KG +L + R A+R++EE MIAAN AR L Sbjct: 434 RGSLDFDLPEPEYSFDDKGRLLRVSRRVRHDAHRLIEEFMIAANEAVARHLGGLKADGSP 493 Query: 405 -RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF 463 +Y VH DP ++L L+ + + R++ F Sbjct: 494 EGAPKEPFLYRVHPQPDPERLESLFDSLEAIDPEL-VPVKPAASALQGILRDVQGSDREF 552 Query: 464 LDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI----KGE 518 L R+ R A E HFGL AY +TSPIR+Y D++ HR LKA + Sbjct: 553 LVGRLCLRAMPQARYQPENEGHFGLASRAYCHFTSPIRRYADLLVHRALKASLGLYDGAL 612 Query: 519 TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 A + + Q+ R R ER++ L L+ + G RF + ++ G+ V Sbjct: 613 PAGQKLLRVADQLNRRERDALDCEREMARRLACMALEGRVGE--RFRGVVAGVNDFGLFV 670 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L + I L + + V + + + ++V +AEV I Sbjct: 671 ELNEMPVEGMIRVEDLGDDWYDFDV-RRQCLVGQRSGLCWSMGQSLEVVLAEVHSGRLEI 729 Query: 639 IARPV 643 P Sbjct: 730 RLLPT 734 >UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB22_MYCGA Length = 707 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 146/650 (22%), Positives = 263/650 (40%), Gaps = 41/650 (6%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDR 59 +N ++ + + G + G GF++++ ++ Y++ + ++ D Sbjct: 60 LANNKVVLGYQNSAPDLSKIMVGRLAIGTNGNGFIKLENEELSKYYVHNTNLNNALNNDL 119 Query: 60 IIAVIHS------EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 + + + + A +++E TR+VG + D ++PD P L I Sbjct: 120 VEFAPLTVQNDWYKHDLTDACILKVLERARTRYVGTYEDTGDEYLVLPDDPKL---IYKV 176 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 E KE D + E+ A L + I +D + H +E Sbjct: 177 VLDRHYLELKEHDRILFEIIEI---KQGVIRAALVKKIGSKEDLGIDIDAIAYNHLIEPT 233 Query: 174 APDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 + E + +R+DL L F+TID AS D+DDA++ K + DD L Sbjct: 234 FSQEIINEAKSLKYELDDHQKEIRKDLRDLSFLTIDPASALDLDDAIYVKKIDDDSYNLK 293 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 VAIAD ++ +D+ A+ +A + YL IPMLP ELS+DLCSL + V+ Sbjct: 294 VAIADVCHYVKFDGPMDRGARTKATSVYLANKVIPMLPEELSNDLCSLNPGVDKFVIVGD 353 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 + + G I + EF+ A I S + Y++V+++ T D + +I + + + + Sbjct: 354 LMIDGTGKIMSH-EFYPAIINSHKRFSYEEVNEYFSATNDLKDVDPSIRQMLDEARVLAK 412 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + + D + L ++ E ++I+ +P A ++E+ M+AAN Sbjct: 413 ILRRMKIKRGYLQFDVDETSIELDDRFEPINILKKPHGEAQEMIEDFMVAANEAVCLFAS 472 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQPTGF 463 IY VH ++ A +T + D + + D L D + Sbjct: 473 KYNLDFIYRVHPKPAVHKLNSFANWARTLEFEIFGDLNSIKSTDIQKWLTNNADHKQIKL 532 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 ++ + R + A S E HF L + Y +TSPIR+Y D I HR+L + A Sbjct: 533 INKLLLRSMNKAYYSVENTRHFSLASKHYTHFTSPIRRYADNIVHRILWMFVFDPQAYTD 592 Query: 524 QD---------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 E + ++ + ERDV +LY +++ + G + I I+ Sbjct: 593 LQRNELKSHLVEWCDLINKQELVAVDCERDVNAFLYVKYMSNFLG-NWYHNVTINAITNF 651 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ--ENGTVQIKGETVYKVTD 622 GM V L DNG + L+ + + + + Y++ D Sbjct: 652 GMFVEL-DNGIEGLVR---LNNINGDYYRYDPNTDSLIGRNTHKKYQIGD 697 >UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuclease R n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VTQ9_9PROT Length = 830 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 174/614 (28%), Positives = 255/614 (41%), Gaps = 30/614 (4%) Query: 36 LEVDAQKSYFIPPPQMKKVMH----GDRIIAVIHS-EKERESAEPEELVEPFLTRFVGKV 90 E A S +P Q KV GDR + + + E A P + + TR +G Sbjct: 95 AEAPAGTSVVLPSTQAGKVKPPIGTGDRFLGRLTALEDFHYHAAPIKRIGRGATRTLGVY 154 Query: 91 QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQY 150 + + P + + +EGD AE +G + Sbjct: 155 RPHRRGGHVDPVSRKAQS---LDIDSRDANNAEEGDLVWAEPLN--ARGYGPRKGRIVSI 209 Query: 151 ITFGDDHFVPWWVTLARHNLEKEAPDGVATE-----MLDEGLVREDLTALDFVTIDSAST 205 DD + LA ++ P V + + EDL AL +TID Sbjct: 210 EGHVDDRTNWSLIALAEQDIPIHFPPEVVEAAEALTLPSDLSPYEDLRALPLITIDPKEA 269 Query: 206 EDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRE 265 +D DDA+FA+ + + +++VAIAD ++ GS LD+ AK R + YL +PMLP Sbjct: 270 KDHDDAVFAEPIDEG-FRIVVAIADVAQYVRPGSPLDQEAKRRGNSVYLIDRVVPMLPEA 328 Query: 266 LSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD 325 LS+ LCSL+A E R L C + + +G FF A I L Y++ + Sbjct: 329 LSNGLCSLKAGEDRTALCCELIIGPNGG-RKRHRFFRALINCHRGLAYEEAQAAADGRLT 387 Query: 326 WQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIA 385 + + L Q R + D P+ + +L E G V IV + R A Sbjct: 388 DRTRDLK-DSVIDPLWAAWQALETARRKSPSLDLDMPERQILLAEDGAVDRIVRKQRLDA 446 Query: 386 NRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLT 445 +R++E M+ AN+CAA L IY VH D D L L + G + +VL Sbjct: 447 HRLIEAYMVTANVCAAETLESANRALIYRVHDVPDEERIDGLRVYLSSMGYSLPKGQVLK 506 Query: 446 LDGFCKLRREL-DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGD 504 F + R D T + + R Q A STE HFGL L YA +TSPIR+Y D Sbjct: 507 PAKFNHILRAARDKDETDLVALAVLRTQMQAIYSTENLGHFGLSLRRYAHFTSPIRRYAD 566 Query: 505 MINHRLLKAVIK-GETATRPQDE-----ITVQMAERRRLNRMAERDVGDWLYARFLKDKA 558 + HR L + + G R +DE + ++ R AER D A FL+D+ Sbjct: 567 LTIHRALVSARRLGPGGMRAEDEAHLADVAEHISVTERRAVAAERATQDRYLASFLEDRE 626 Query: 559 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGETV 617 G D F I ++R G+ V L + GA FIP LH D +E N + + Sbjct: 627 GND--FHGRISGVTRAGLFVTLDETGADGFIPMRSLHT--DYYQHDEERNALIGQRSGGH 682 Query: 618 YKVTDVIDVTIAEV 631 Y + ++V + EV Sbjct: 683 YHLGQRVEVRLLEV 696 >UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organisms RepID=Q6KI25_MYCMO Length = 708 Score = 460 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 146/645 (22%), Positives = 246/645 (38%), Gaps = 41/645 (6%) Query: 21 RAEGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIH-----SEKERESA 73 G + KGFGF+ E D + S F+ + +GD + + +EK++ Sbjct: 64 EFNGTISINSKGFGFVDFEDDKKDSVFVSKFNLNGSFNGDLVSVKSYCESNEAEKQKCFG 123 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 ++++ VG +N ++ N KE + Sbjct: 124 VISKIIKRNTQYLVGWSFLENGKMKFKAFDEKYNVTQFLFLDNVTN--LKENTLIKVRIV 181 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA-----------PDGVATEM 182 S ++ + I ++ + + + ++ E P ++ E Sbjct: 182 EF---NKMSSIVQIVKTIGHLNNPYDEVALVIEESDIVTEFNENTLIESANIPQSISREK 238 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 +E R D VTID T+D DDA+ + D L V IAD + ++ E S +D Sbjct: 239 -EEINNRRDYREKLIVTIDGDDTKDFDDAILVEK-KGDNFILSVHIADVSYYVKENSPID 296 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A R + YL IPMLP LS+ +CSL N R + M + G + E F Sbjct: 297 LEALSRGTSIYLADRVIPMLPESLSNGICSLNPNVDRFTMGIEMEIDEKGRTIRS-EIFP 355 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I SK +L Y +V+ + N + + + E + ++ +++ V + Sbjct: 356 SIINSKKRLTYKEVNRFYNNEISFD-DVPNLNEMLNTSLELSNILQKFKIADGYVDFEIE 414 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + + IL + G V I R ++ ++E M+ AN A L +Y +H D Sbjct: 415 EPKVILDKDGRVERIDVRERGLSEVLIENFMVRANEEVATFLAKNKIPTLYRIHEKPDNL 474 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLDSRIRRFQSFAEISTEP 481 L ++KT ++ + F K +L D + F+ I R A+ S Sbjct: 475 KISKLNGIIKTLNINAFFQSGNDSLKFSKTLNKLKDQRFDNFIKILILRSMQKAKYSPNN 534 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR------PQDEITVQMAERR 535 HFGLG + Y +TSPIR+Y D++ HR+++ +I + I +E Sbjct: 535 VGHFGLGSKFYLHFTSPIRRYPDLLTHRIIREIIFKNQKDKISSFNAILKRIGEMNSESE 594 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 ER+V D A F + K G + F +V I G V +N I + Sbjct: 595 NKAVELERNVIDIKKAEFYESKIGKN--FVGIVVSILPFGFFVEF-ENKVDVLIHKDNIV 651 Query: 596 AVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 E GT I + + D ++VTI R I A Sbjct: 652 DA----YKINEEGTKIILKDKTILIGDQVNVTIIGTNRLARKIDA 692 >UniRef50_A0Z0P5 Exoribonuclease R n=6 Tax=Bacteria RepID=A0Z0P5_9GAMM Length = 688 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 187/646 (28%), Positives = 290/646 (44%), Gaps = 35/646 (5%) Query: 4 DNPLLAQLK---QQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 +N +AQLK Q++ ++ AE VK T+ +GF V + FIPP +M KV+ GD++ Sbjct: 26 NNDAMAQLKGLKQKIEAEKEYAEATVKGTQNRYGFAVVGDGREIFIPPDEMLKVLPGDQV 85 Query: 61 IAVI-----------HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA 109 I S+ R A+ E L+E L RFVG + K + + PD LK Sbjct: 86 RICIRPATQKGKGGKKSQDGRTVADIERLIESTLDRFVGTIVVKGKAVFVEPDLHDLKRW 145 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 + + K GD + RHP K + A++ + AR Sbjct: 146 LFIPPH--ARNGAKPGDKVDCALMRHPFKDGKPS-AKVLSVFGSPGTPGLENRYCAARAG 202 Query: 170 LEKEAPDG-----VATEMLDEGLV---REDLTALDFVTIDSASTEDMDDALFAKALPDDK 221 L D + E L R DL+ L+FV+ID+A T+D+DDAL+A+ + Sbjct: 203 LTWAWSDKESATWIKFAEEREPLSDPERVDLSHLNFVSIDAARTQDIDDALYAEVTSEG- 261 Query: 222 LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPV 281 L VA+ADPTA++ LD+ A + Y G +PMLP + D C+L E RP Sbjct: 262 WVLYVAVADPTAYLDGMEGLDETLTSIATSTYFHGDVLPMLPEAIGRDFCALSEGEARPS 321 Query: 282 LACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLA 341 L C++ +S G + + EF A I+SKAKL Y V ++ D + A + + L Sbjct: 322 LVCKINVSDAGQV-GSYEFIQAKIQSKAKLTYAAVDRYVTGHND---QLIAWSNPLEALV 377 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 Q + R +H LV +DR +YR+ L ++ ++ I + + +VEE MIAAN AA Sbjct: 378 QAYRALRSHRESHELVMEDRTEYRWQLNDERQIGTIETAEKLASQHLVEECMIAANRSAA 437 Query: 402 RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT 461 L G + VH GF A LK + + T+ G+ ++ L+A T Sbjct: 438 HFLAMSEATGPFVVHPGFRKDRASETQEFLKRYLPDLTDTTTHTVAGYQQIFAALNAPHT 497 Query: 462 GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 L + R + A ST P H G+ L AY +TSP+RKY D + HR +K V+ + Sbjct: 498 LPLRGMVNRLLTRAVFSTSPAEHMGMALNAYTNFTSPLRKYVDFLTHRQIKRVLSKKPGD 557 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFL-KDKAGTDTRFAAEIVDISRGGMRVRL 580 D A R A + WL +L + K+ +TR+ EI ++ G VRL Sbjct: 558 AVTDLQLQSTASAIARGRGATQAAERWLTGNYLDRCKSSGETRYTGEIAHVTSAGFTVRL 617 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDV 626 G + L ++ + ++ + ++ ++V Sbjct: 618 AGLGLEGQVD---LRKDPEKFSFDKWTASLTSSTRKL-QLGQTVEV 659 >UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobium etli RepID=UPI0001903083 Length = 747 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 152/588 (25%), Positives = 247/588 (42%), Gaps = 49/588 (8%) Query: 86 FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYA 145 +G+ + + P + + + R +G GD +A++ +G ++ A Sbjct: 118 LIGRPAEWPEDQGVAPAVAIRQQSPAGRQGKGKAPVAGLGDRILAKIFPAVDRGGPAYTA 177 Query: 146 ELTQYI-------------------------TFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 + + I G+D + T + P V Sbjct: 178 RIIKVIDRRRGAAMGVFRTAPGGGGRLLPIERRGEDMVIDPDFTGGADGIPHVFPPAVMA 237 Query: 181 EMLDEGLV----REDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVAIADPT 232 E RED + +TID A +D DDA++A+ P + + VAIAD + Sbjct: 238 EAEAAKPATMSHREDWRDVPLITIDPADAKDHDDAVYAELDPSPDNPGGVIVTVAIADVS 297 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ S LD+ A R + Y P +PMLP +S+DLCSL+ RP LA RM+ S++G Sbjct: 298 WYVRPNSPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGLDRPALAVRMSFSSEG 357 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 + F ++S AKL Y Q ++ D + + ++ L + R Sbjct: 358 RKIGHT-FHRIMMKSAAKLSYQQAQAAIDGNADDKT-GPMLEPILKPLWRAYAVMKRGRD 415 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + D P+ + +L G V + PR A++++EE MI AN+ AA L K + Sbjct: 416 RRQPLELDMPERKILLKPDGTVDRVFVPPRLDAHKLIEEMMIQANVAAAETLEKKRQVLV 475 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRF 471 Y +H G A + L L T G+ + + + F + + + ++ + R Sbjct: 476 YRIHDGPTLAKQEVLREFLATLGISLAKGGNVRANSFNGILAKAEGTAHQTMVNEMVLRS 535 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-GETATRPQDE---- 526 QS A S E HFGL L YA +TSPIR+Y D+I HR L + GE P +E Sbjct: 536 QSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGFGEGGITPDEEAALD 595 Query: 527 -ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 I +++ R AER+ D L A L + G + FA + +++ G+ + L D GA Sbjct: 596 DIAAEISTFERRAMAAERETIDRLIAHHLSTRVGEE--FAGRVSGVTKSGLFIALPDYGA 653 Query: 586 IAFIPAPFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEV 631 FIP L + + E T Y++ D + V +AE Sbjct: 654 DGFIPISTLGS---DYFIYDEAHQALSGERTGLGYRLGDSVTVKLAEA 698 >UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY8_LEPBJ Length = 755 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 143/652 (21%), Positives = 275/652 (42%), Gaps = 40/652 (6%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIH--SEKE 69 K L + + G + ++KG GF+++ + F+P ++ + GD + + +K Sbjct: 114 KNILVNSNQKLLGTISTSKKGDGFVKLPSGMEVFVPGQYVQSAIQGDLVEVQPNAIGKKG 173 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAI-----VPDHPLLKDAIPCRAARGLNHEFKE 124 R E +++ + V K+ + + + L E + Sbjct: 174 RLEGEVTKILRRGRDLYRMIVIEKDPKFIFGKLLDIDGEEKEGYLLRKTILMNLQDEIQL 233 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWV----------TLARHNLEKEA 174 GD + ++ R + +R+ Y Q++ F D + L N+ Sbjct: 234 GDVLIVKL-REETEHERNLYE--VQFLRFESDTKEDLDLMRMLMKYNYSILYPENIVLNL 290 Query: 175 PDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 P+ V +D+ R DL L +TID ++D DDA+ +++ V +AD + + Sbjct: 291 PEEVDESTVDDWGSRVDLRNLKCITIDGEYSKDFDDAISFVE-EKSRIRFYVHVADVSYY 349 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + G+ LD+ A RA + YL +PMLP +LS++LCSL A + R M G I Sbjct: 350 VRLGTDLDEEAYNRATSVYLGSRVVPMLPPDLSENLCSLVAGKNRLAFTVEMEADWKGKI 409 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 +++++ + I + Y++ + S + + + + R Sbjct: 410 T-HVKYYKSVINVAERYTYNRAESEI--------LSGDPGNWIFRMNEFAKALRARRIED 460 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 V + + + + + V++I + R A+ ++EE M++ANI A +R K +Y Sbjct: 461 GRVDLNLKENKVVTDSEHNVVEISVQDRLQAHILIEEFMLSANIKIAESIRKKKHPTLYR 520 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQS 473 +H + ++L A L+ +G+ + ++ + + + +EL+ +P + + R Sbjct: 521 IHEPMNEEKLESLNAFLQLNGIKILLKDS-SYEAIRAVLKELEGKPAERLFNMFLLRTFM 579 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE---ITVQ 530 A S E H+GLG E Y +TSPIR+Y D++ HR+L+ ++ G+ +E + + Sbjct: 580 QAYYSGEYLGHWGLGFEDYCHFTSPIRRYPDLVCHRVLQQILLGKKPLYGPEEVVTLGLH 639 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA-FI 589 + + R AERD R+L +K G F+A I + V L + A I Sbjct: 640 CSHQERKASDAERDYYKLKACRYL-EKTGIKE-FSATITGCKPHLIFVDLENPSVDACLI 697 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + F E+ + K +Y + D I+V + V E I + Sbjct: 698 SSEF--TDEGEIRLETDFSFYSKKYSKIYTLGDKIEVELDRVDYEEIKIFVK 747 >UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NB86_9BACT Length = 645 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 149/647 (23%), Positives = 264/647 (40%), Gaps = 39/647 (6%) Query: 20 PRAEGVVKATEKGFGFLEVDAQK------SYFIPPPQMKKVMHGDRIIAVIHSEK----- 68 EG + T GFGF+ + A + FIPP + + M GD + I + Sbjct: 11 DTVEGKLTVTPTGFGFVALPADEAGRHPDDIFIPPQFVGEAMDGDEVKVAILPPREDVPG 70 Query: 69 --ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + + +++ FVG++Q I P + + D I G K GD Sbjct: 71 DSRGPAGKIVAVLKRAREEFVGELQE---GGRIKPLNRRMPDDIEIT---GSRRGAKPGD 124 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--- 183 W ++ S+ +T + + +A +L + E L Sbjct: 125 WVKVKLL---GSEGGSWQGAITDAMGKAGEIAADLDAVMAEFDLCPRYSEADNEEALKIV 181 Query: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD-DKLQLIVAIADPTAWIAEGSKLD 242 + RED T VT+D +D DDAL ++ + V I+D A+IA SK D Sbjct: 182 PREIEREDCTKQLTVTLDPIDAKDFDDALSIMPGEKRTEVIVGVHISDVAAFIAPKSKFD 241 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 K A+ R+F+ YLPG +PMLP L+ + SL+A +V +T+ + Sbjct: 242 KEAEKRSFSCYLPGRTLPMLPAALTARI-SLQAGQVSNAHTVFLTVERSSGKILSFRRAH 300 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN-HALVFKDR 361 I+ +L Y++V +++++ S+ + +++ L +I ++ +R + Sbjct: 301 TKIKVDHRLNYEEVQEFIDHGTAPADWSKNLQSKLKQLVEITRKMQAYRKKTEDFIDLAL 360 Query: 362 PDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ R + EK ++ +V++ R + +VEE M+AAN L + G+Y VH + Sbjct: 361 PEVRILCDEKTNRIVGLVSKVPRESENVVEECMLAANSAVGTQLGEISVAGLYRVHPEPE 420 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEIST 479 + A ++ + ++ + + L P + S++ R A Sbjct: 421 AEKIEEFTANMQEM-FGITPGDLSSRKACNAFLKSLPDDPKRPIILSQLLRSLPRAYYLE 479 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE--TATRPQDEITVQMAERRRL 537 +P HFGLG Y +TSPIR+Y D+I H+ L G +T ++ + + + Sbjct: 480 KPALHFGLGKGRYCHFTSPIRRYPDLIVHQQLWNYDTGARTRSTATLAKVALDCSTKEEN 539 Query: 538 NRMAERDVGDWLYARFLKDKA--GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 N A D L RFL++K G D F I ++ G+++ + + G FIP L Sbjct: 540 NDNAYFAANDRLKLRFLQEKLEAGGDLTFDGVIAKVTPAGLQLDVSELGIYGFIPNEQLK 599 Query: 596 AVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 E+ + +K + V +A + S + P Sbjct: 600 GSS----YKNEHARRREAESAEWKPGKTMRVRLASIDFVRGSAVFVP 642 >UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQL2_AKKM8 Length = 756 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 152/643 (23%), Positives = 248/643 (38%), Gaps = 49/643 (7%) Query: 37 EVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE----------------KERESAEPEELVE 80 + +A + P + + GDR+ + + A EE+ E Sbjct: 100 DTEAVPELELKPNHLGTALDGDRVAVRVERKAARGRRNIRRNRFSSPDADMKARVEEVTE 159 Query: 81 PFLTRFVGKVQ-GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKG 139 +R++G + GKN ++ D +I A E G E + Sbjct: 160 RARSRWLGVFRTGKNKPGRVLGDGVSSPSSI--ELAEKPAMEVLPGQLVSVEPITCGEE- 216 Query: 140 DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLVRED 191 ++ ++ + + + D+ V + ++ L E P V E+ E RED Sbjct: 217 KKAPRGKIVEVLGYPDEPHVDMEAVIRKYGLSVEFPASVLRELETLPQTPSPGELARRED 276 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 T +TID AS D DDA+ A P L V IAD + ++ G LD A R + Sbjct: 277 WTDRTVITIDPASARDFDDAISITATPSG-WTLAVHIADVSHFVKPGGSLDGEALRRGNS 335 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 YLP +PMLP LSDDLCSLR + VR C M G + F A I SKA+L Sbjct: 336 TYLPDRVLPMLPHRLSDDLCSLRPDVVRLTKVCEMKFDKKGKML-RARFADAFIRSKARL 394 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK 371 Y + L+ + S VR + R+ + D P+ R ++ + Sbjct: 395 TYQEAFAMLKGNDKGEVPS-----TVREAWNLASILRRNRYAKGALDLDFPEVRAVMDKD 449 Query: 372 GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALL 431 G V I+ E +++++EE M+AAN A L++ IY VH D A L Sbjct: 450 GRVTGIITEEYDESHQLIEECMLAANEAVALALKNGNRPTIYRVHEEPDSAKLFEFGQLC 509 Query: 432 KTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLE 490 + +G V ++ +L + + P L + + A TEP H+GL Sbjct: 510 RLYGHPVH--DIDQRQYLNELMKSIKGSPDEQLLKLALLKSLMRARYDTEPLGHYGLATP 567 Query: 491 AYATWTSPIRKYGDMINHRLLKAVI-------KGETATRPQDEITVQMAERRRLNRMAER 543 Y +TSPIR+Y D++ HR L ++ KG +T +E ++E R++ AE+ Sbjct: 568 NYCHFTSPIRRYADLVVHRSLNPLLANPPKGAKGAGSTGRLEEDAEHISETERISASAEK 627 Query: 544 DVGDWLYARFLKDKAGTD--TRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 D +L+ + D A + + G+ + + + L Sbjct: 628 DANRMKLFEWLEGQCYADHPEVHEALVTETRHFGVLLEIPRLQIKGLVKPDKLPG--GRW 685 Query: 602 VCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 V + +V + V +V E + V+ Sbjct: 686 VYEAFASRWKNDHGSVLCAGLRVPVIPVKVDREQQWADFAIVS 728 >UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepID=C0QZ67_BRAHW Length = 661 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 124/510 (24%), Positives = 217/510 (42%), Gaps = 24/510 (4%) Query: 149 QYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---------LDEGLVREDLTALDFVT 199 + ++ + +N+ E P E ++ R DL + VT Sbjct: 105 EIKVDINNAKKDAEIIAKAYNVPTEFPKKCIEEAKLLPDSMENVELEFDRIDLRDIRTVT 164 Query: 200 IDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNI 259 ID A ++D DDA+ + L +D +L + IAD + ++ GS LD+ A+ R + YL Sbjct: 165 IDGADSKDFDDAISIEKL-NDCYKLGIHIADVSHFVVMGSALDREARKRGNSVYLIDTVY 223 Query: 260 PMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDW 319 PM P ELS+ +CSL R + +T+ G ++++ F + I+S +L YD D Sbjct: 224 PMFPHELSNGICSLNEGVSRFTMTVFVTIDNKGNVKEST-FHKSVIKSSRRLTYDYAQDV 282 Query: 320 LENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVA 379 L+ + + + + E ++ + + + R ++ + + + + IL + G D Sbjct: 283 LDG---IEQDEDWLVELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFI 339 Query: 380 EPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVD 439 R+ ++I+EE M+ AN A+ L++ G IY VH D D + G + Sbjct: 340 GERKETHKIIEELMLIANCEVAKRLKNIKG-SIYRVHDSPDQEKLDTFTRIAFNRGYRLT 398 Query: 440 AEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPI 499 + LD + + L + + R A HFGLG E Y +TSPI Sbjct: 399 RDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNNIGHFGLGFEYYTHFTSPI 458 Query: 500 RKYGDMINHRLLKAVIKGETATRPQDEI-----TVQMAERRRLNRMAERDVGDWLYARFL 554 R+Y D++ HRLLK ++G +P + ++ R+ ER + ARF+ Sbjct: 459 RRYTDLLTHRLLKQSLEGVNNLKPTMQQFYTNSAQWCSKTERIAVECERSLDKVKAARFM 518 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKG 614 KDK G + + + I+ GM V + D G I L + E + Sbjct: 519 KDKVGNE--YNGIVSGITNFGMFVEIEDRGIEGLIRYATLKSH--YRYDEHEQAAYSEED 574 Query: 615 ETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 Y + D I + + +V ++ I P + Sbjct: 575 AKWYTLGDRIRIVVYKVDVKELFIDFIPAS 604 >UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria RepID=B9L5L4_NAUPA Length = 652 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 167/651 (25%), Positives = 286/651 (43%), Gaps = 66/651 (10%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHGDRIIAV-IHSEKE 69 + + + G V T+KGFGFL +K Y I + GD +IA + ++K Sbjct: 38 KIIKLKPKYRIGKVDVTKKGFGFLTPLGVKEKDYLIEAEHLNGAGRGDLVIAEKLFNKKG 97 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R A+ ++E + V + + +P +K + A K + AV Sbjct: 98 RPKAKVVYILEKAFSVSVVYLTFEYKNNKKIPVLRNIKTDLQTYVAEKKKTLKKLPEGAV 157 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML------ 183 ++ + ++ + DD +V ++LA +N ++E E Sbjct: 158 FKVDNY--------TNKIIDVLGVLDDPWVDEKISLALYNKKEEFSKKAIAEAEAYGDYV 209 Query: 184 --DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + R DLT L F TID + +D DDA++ + +L VAIAD + ++ + Sbjct: 210 EKEFYPNRVDLTDLSFCTIDPPTAKDHDDAIYFDKEKN---ELYVAIADVSEYVYLNGNI 266 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK AK R F+ Y P +IPMLPR+LS+++CSL+ E R ++ L+ + E F Sbjct: 267 DKEAKERGFSIYFPHKSIPMLPRQLSENICSLKEQEDRLAFVFKIKLNNKNEVVKE-ELF 325 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESE-AIAEQVRLLAQICQRRGEWRHNHALVFKD 360 A I+SK K YD+V ++L+ + E++ I E + L + ++ R L F Sbjct: 326 EAIIKSKRKYSYDRVDEFLDGRFENTDETDNEILEWLMPLWEKVKKIRTKRLKTGLDF-S 384 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 + + L E+G + I E +++++E+ M+ AN AA+++ FGI+ VH Sbjct: 385 SDEIKMTLNEQGLIEKIELEKETPSHKLIEDCMLLANKAAAKMI----DFGIFRVHEKPS 440 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-----LDSRIRRFQSFA 475 + D L L G+++D EE F K+ R++ Q +D I R Q A Sbjct: 441 SNSIDELYESLTALGINIDVEE----KDFVKVVRDIQKQAKMMGIEKEVDKLIIRSQQQA 496 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-----ETATRPQDEITVQ 530 + H+ LG E Y +TSPIR+Y D+ HRLLK++I+ E R + + V+ Sbjct: 497 RYDAKNIGHYALGFEKYTHFTSPIRRYSDLTLHRLLKSIIRNDKKQMEFILRNIEALVVK 556 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 ++E R E D D YAR+ K+ + + I D Sbjct: 557 ISELEREAMKVEWDFYDRKYARYAKEHL--NEIYKGIIEDTE------------------ 596 Query: 591 APFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 P + + ++L+ V +K + Y + + +D+ I + T I + Sbjct: 597 IPPIAKITEDLLLGAR---VFLKDKKKYNLFEKVDIEIVSSNIATAKIKGK 644 >UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY08_STRM9 Length = 619 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 134/638 (21%), Positives = 254/638 (39%), Gaps = 41/638 (6%) Query: 19 TPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEEL 78 E K F D + I GD +I I + ER + ++ Sbjct: 2 NKIFESKFICKNKRIAFAYTDNNEKVLIRDINFNNAFDGDTVIVEII-DNERLIGKVNKI 60 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 V+ + + G V I+ L + K GD + + Sbjct: 61 VKRQDSPYFGNVILCKRNKYII----RLNRSDLIVTTTTKKINIKHGDILSFNI-DYTTL 115 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVRE 190 + ++ L N+ K + + E+++ E R Sbjct: 116 NKDDIKVNILNNFGNINNSDNILNSLLDASNISKGFLNEIKKEVVEIRRPNVSEELKYRV 175 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL +TID S +D+DDA++ + ++ L V+IAD + ++ E SKLD A R Sbjct: 176 DLRHQKTITIDDISAKDLDDAIYLEK-EENHYILYVSIADVSYFVKEYSKLDFEAAKRGN 234 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + YL IPMLP++LS++LCSL +E + ++ +G + ++ +FF + I+S + Sbjct: 235 SIYLAEQVIPMLPKKLSNNLCSLNPDEDKLTFTVKLKYDLNGKLIES-DFFKSIIKSHHR 293 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 L Y V+ +N P + + ++ + + ++ ++ + P+ + IL E Sbjct: 294 LNYTDVNKMFDNNDKSYP-------ILWDMLELSKLLRKQKNKKGMINFNIPEIKLILDE 346 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 G++ +I ++ ++E M+AAN A L + IY VH + +L Sbjct: 347 NGDIKEISKRISGLSQELIENFMVAANEAVAEYLHWQNIPAIYRVHEAPEIDTLRSLNKK 406 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEISTEPGPHFGLGL 489 L G +++ + K+ + +L + + + A+ E HFGL L Sbjct: 407 LNILGYNINNVMDIHPGKIAKIIDKSSNDENSYLIHKTVLQAMKRAKYMNENKGHFGLAL 466 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKGETAT-----RPQDE---ITVQMAERRRLNRMA 541 + Y +TSPIR+Y D+I HR+L+ + + + + ++E I +++ R+ Sbjct: 467 DNYLHFTSPIRRYSDLIVHRMLQFTLNNKKISTKYIDKKKEEYKLIAEHISKTERVAERL 526 Query: 542 ERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 E+D ++K + F A I I RG + ++L DN + Sbjct: 527 EKDSIKLKLLDYMKKHL--NEVFEARISGIIRGKIFLQL-DNLIE-----TVFYDNISSK 578 Query: 602 VCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 + + KG + + D + + I ++ E II Sbjct: 579 YIIDDALLIDNKGNK-FNIGDKVKIKIIKLDYERIEII 615 >UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam n=2 Tax=Synechococcus RepID=Q2JH83_SYNJB Length = 766 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 135/689 (19%), Positives = 253/689 (36%), Gaps = 76/689 (11%) Query: 21 RAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKERE---SAEP 75 G ++ + KGF F D + +I + +GD+++A + + R E Sbjct: 74 LVVGRLRCSSKGFCFAIRDEPGVEDVYIHGSNLSGAWNGDQVLARVTKDGNRRRSPEGEV 133 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 +VE + VG+++ +VP L G E EG A E+ R+ Sbjct: 134 VAVVERANSALVGRLKQTEQGFRVVPLDDRL--LFELALTEGSPVELAEGRVAYVEVNRY 191 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--------DEGL 187 PL GD + + + G + + + +++L +E P V + Sbjct: 192 PL-GDLPPTGTIRKILGDGPEASIDADLVCCKYDLPQEFPAPVLEAAAALPKKLSRSDQK 250 Query: 188 VREDLTALDFVTIDS-----ASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 R DL +T++ + + A+ + +D L + IAD W+ L+ Sbjct: 251 GRRDLRDWFCITLEPLDLQHPHGLEPNVAVSLQRQENDHWLLGIHIADVAHWLDPDHPLE 310 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A+ R T YL +P+ P E+ + L L + R + +TL +G + N E + Sbjct: 311 QEAQQRTATVYLDTMVLPLFPPEVHNRLA-LLPQQERLAYSLLVTLDPEG-VVQNFEIYP 368 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQ--VRLLAQICQRRG-EWRHNHALVFK 359 + ++S+A L Y QV L T D P+ E ++ L ++ Q + Sbjct: 369 SLVQSRAHLSYGQVQALLATTADLGPDEEVPELMALLQNLLRLSQILRAKRHQAGGFDLP 428 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 ++ ++ R A+ ++ E ++ AN LR + V Sbjct: 429 LLDLLTPHSADESGYGPLLISDRLGAHALMTEILLLANQILGHHLRQLGIPSLARVQPAP 488 Query: 420 DPANADALAALLKTHGLHVDAEE--VLTLDGFCKL------RRELDAQPTGFLDSRIRRF 471 + L L ++ ++ V+TL + ++ L + + L +++ Sbjct: 489 AAEALQSFLRLANAMKLDLNLQDPAVVTLADWQRICARITAPDVLASGASPALVAQMLAT 548 Query: 472 QSFAEISTEP----GPHFGLGL-EAYATWTSPIRKYGDMINHRLLKAVIKGET------- 519 E +P HFGLGL E YAT+T+P+R+Y D++N R L + Sbjct: 549 LPPVEYRLQPLEEQLGHFGLGLKEPYATFTAPLRRYADLLNLRALHLALSKGRERRSSRS 608 Query: 520 --------------------ATRPQDEITV-------QMAERRRLNRMAERDVGDWLYAR 552 + Q+E ++ E R+ + AER++ + Sbjct: 609 KTVVDLHGPSGYGQIDWQVLPPKVQEEWQAFLQAQLPKIQEGYRIRQQAERELMGLKRSE 668 Query: 553 FLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI 612 F++ G F I+ + G V++ A + L E Q V Sbjct: 669 FMQKHLGE--VFPGLIIGVQNYGFFVQVDPILAEGLVRVSTLKNDWYEYRSRQ-QALVGR 725 Query: 613 KGETVYKVTDVIDVTIAEVRMETRSIIAR 641 K +++ D ++V I V + I Sbjct: 726 KSRRQFRLGDRVEVQIKNVDYYRQQIDLA 754 >UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09B28_STIAU Length = 630 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 165/639 (25%), Positives = 254/639 (39%), Gaps = 40/639 (6%) Query: 22 AEGVVKATEKGFGFLEVDAQKS-----YFIPPPQMKKVMHGDRIIAVI-HSEKERESAEP 75 G + +GFGFL V S FIPPP++ + D + A + R +A Sbjct: 10 VTGRIDVHPRGFGFLVVQPPPSGEVLSAFIPPPELASFLADDTVSATVSQGADGRWTASG 69 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 L++ + G+V + + D + P + GD VA + Sbjct: 70 LSLLQRPREQVYGEVVLRKGTPFLRIDREVASSDWPLETG----TAVQTGDAVVARIVE- 124 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGLVR 189 A L + G D V +ARH+L ++ P V E R Sbjct: 125 -------GKAVLLHRLEPGVDRSVAR--IIARHDLRRDFPPEVLEEARAVRGVPHALGAR 175 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKA-LPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 DL AL VT+D+ ST D+DDA+ D L+L+V+IAD ++ EGS LD+AA+ R Sbjct: 176 RDLRALPTVTVDAPSTRDIDDAISVLPAGEDGALRLLVSIADVAEFVTEGSALDRAARER 235 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YL G +PMLP ELS SL E R L+ + + A+G + + + I S Sbjct: 236 GTSVYLAGHVLPMLPEELSSHWLSLVPGEERRCLSVELRIDAEGHVT-AADVSESLIRSW 294 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A+L YD+V+ +L+ G E + E + R R + R + RF Sbjct: 295 ARLNYDEVAAYLD-RGAVSAAMEPVREAMPWFRAASARLAVARAGRGGMELAREEARFTF 353 Query: 369 GE-KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 G+V I P A++++E M+AAN A + D+ ++ V D L Sbjct: 354 DAGTGQVSGIENTPPTTAHQLIERFMVAANEAIASWMEDRGLPAVFRVQDEPDRQRVADL 413 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPGPHFG 486 +A G LT R++ L S +RR FA + P HFG Sbjct: 414 SAFAHHSGFEAGFGGRLTPLALAAFDRQITGCAAEPALRSVLRRSLGFARYTVVPSGHFG 473 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD----EITVQMAERRRLNRMAE 542 L Y +TSPIR+Y D+ HR LK ++G QD ++ V++ R + + AE Sbjct: 474 LAARRYLHFTSPIRRYADLAVHRTLKQYLRGRRDFAHQDPAVEQLAVRLNARAKASSRAE 533 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELV 602 +D L AR + G + A I + G+ ++L +P L Sbjct: 534 QDRHRVLEARLMASHVGKS--YPARITRVKPFGLLIQLDGMLVEGVVPMDSLPGGP---F 588 Query: 603 CSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 T + E + V + + I Sbjct: 589 RPDARETSLVGKERSFTVGMPLMAKVVSTDEVLGRIEFA 627 >UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n=18 Tax=Cyanobacteria RepID=B2IW45_NOSP7 Length = 784 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 125/698 (17%), Positives = 240/698 (34%), Gaps = 75/698 (10%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 K + S+ E ++ + KGF F D + +I + +GDR++ + E Sbjct: 57 KYRRVSEEGIIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGS 116 Query: 70 RE---SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 R E + ++E + +++ VP L + + + E Sbjct: 117 RRRSPEGEVKLILERSNHTLLARIKQVETGFRAVPLDDRLLFELKIQP-NEVKLEEAIDH 175 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD-- 184 E+ R+PL + Q + + + +H+L + PD V Sbjct: 176 LVHVEVLRYPL-AQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPDHVLEAAAKLP 234 Query: 185 ------EGLVREDLTALDFVTIDSA--STEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + R DL L +TI+ T+ +++A + L V I D + ++ Sbjct: 235 KKLLKADLKNRLDLRNLFTLTIEGVNGDTKVIENAFSLEKNLAGNWLLGVHITDVSHYVQ 294 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 LD+ A R + YL +P+LP +++ CSL R ++ +T+ Sbjct: 295 PDEALDREALKRGKSVYLGELVLPILPPVVAER-CSLIPGSDRLTISFLITIDPQSGEVL 353 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 E + I + L +Q L TG+ Q +S + + ++ L + + R N Sbjct: 354 EWEIQPSVINVETALTTEQAQAIL--TGESQVQSPQVVQILQDLQALQTGVKQVRLNRGS 411 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + + P + ++G +L V ++ E ++ N A L I+ V Sbjct: 412 LQLNLPPSQNAYYDEG-ILGAVVVNDLPVRSLLTELVLLVNQLIATHLNALGVPAIWRVQ 470 Query: 417 MGFDPANADALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQS 473 D + + L G L +D E + + L P+ L ++ Sbjct: 471 GTPDVEDVQEMLKLAVNLGVDLTLDPEVDIQPLDYQHLTTAFAESPSEQVLTYLLQDTLK 530 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR----------- 522 + ST G HFGL L Y +++P+R+Y D++ R+ +++ R Sbjct: 531 PSAYSTTKGSHFGLALPQYVHFSAPLRRYPDLLMQRVYYTLLENGRDRRNTRVRERVNLR 590 Query: 523 ---PQDEITV--------------------QMAERRRLNRMAERDVGDWLYARFLKDKAG 559 +EI Q+ +R + + AE D+ A+ +K + G Sbjct: 591 HSSSHEEINWNVLPPELQQELQSDLTRVIVQINDREKEVQEAEADLAGLQKAQLMKQRIG 650 Query: 560 TDTRFAAEIVDISRGGMRVRLV--------------DNGAIAFIPAPFLHAVRDELVCSQ 605 F I + G V + + L E ++ Sbjct: 651 --QVFQGVITGVQSYGFFVEIEVPAAEVESSSNPGVPLRVEGLVHVSSLKDDWYEYR-AR 707 Query: 606 ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + K Y++ D + V + V + I V Sbjct: 708 QQALFGRKNRASYRLGDRVAVQVKSVDYYRQQIDLVTV 745 >UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria RepID=A6DBI2_9PROT Length = 650 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 171/651 (26%), Positives = 271/651 (41%), Gaps = 66/651 (10%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHGDRIIA-VIHSEKE 69 Q L + G V T+KGFGFL ++ Y I + GD +IA +I +K Sbjct: 38 QILKIKPKYRAGKVDITKKGFGFLIPIGVKERDYIIESHHLNGASKGDLVIAEIIKRKKG 97 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R A+ ++E V ++ + VP +K P K D AV Sbjct: 98 RPKAKVVYILEKSFVYSVVYLKYEFKNGRKVPVLRNVKTDQPVYVNEKKKTLKKLPDGAV 157 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV- 188 ++ + ++ + + D +V ++L +N ++E E G Sbjct: 158 FKVNNY--------TVKIEEVLGVLQDPWVDEKISLGLYNKKEEFSKKAIKEAKAFGDYV 209 Query: 189 -------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 R DLT L F TID + +D DDA++ + +L VAIAD + ++ + Sbjct: 210 DKLMYPDRVDLTNLSFCTIDPPTAKDHDDAIYFDKEKN---ELYVAIADVSEYVYLNGNI 266 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK AK R F+ Y P IPMLPRELS+++CSL+ NE R +++ + + E F Sbjct: 267 DKEAKERGFSIYFPHKAIPMLPRELSENICSLKENEDRLAFVFKISFDDNNEVIKE-ELF 325 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 A I S K YD+V ++LE + E + I + L + + R L F + Sbjct: 326 EAIIHSHRKYSYDRVDEFLEGKFENIDEIDKEILSWLMPLWEKVKHIRTERLKTGLEF-E 384 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 + R L E G + ++ E +++++E+ M+ AN AA+++ FGI+ VH Sbjct: 385 SDEIRMSLDENGMIKEVKIEKETPSHKLIEDCMLLANKAAAKMI----DFGIFRVHEKPS 440 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-----FLDSRIRRFQSFA 475 + D L + L G+ VD +E F K+ ++ AQ F+D I R Q A Sbjct: 441 QTSLDELYSELGALGIDVDVDE----KDFVKVVEKIQAQAKELGIKKFVDKLIIRSQQQA 496 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-----ATRPQDEITVQ 530 PHF LG + Y +TSPIR+Y D+ HRLLKA IK + R + + V+ Sbjct: 497 RYDAACTPHFALGFDRYTHFTSPIRRYSDLTLHRLLKATIKNQQKIVDYILRNVEALVVK 556 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 ++E R E D D YAR + G I Sbjct: 557 LSELEREAMKVEWDFYDRKYARVAELNIGKK-----------------------YEGIIE 593 Query: 591 APFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + L V +K + + + +DV I + T I + Sbjct: 594 DKEIPPIAKILEDKLLGARVFLKNTEKFNLFEKVDVEIVSSNIATAKIKGK 644 >UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN Length = 726 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 142/652 (21%), Positives = 260/652 (39%), Gaps = 42/652 (6%) Query: 21 RAEGVVKATEKGFGFLEV--DAQKSYFIPPPQMKKVMHGDRIIAVIHSE---KERESAEP 75 + +G++ K GF+ D + Y+I + + GD + + ++ A Sbjct: 81 KFQGILNLGNKNTGFVRPLDDDKTVYYIHFSNLAGALDGDLVEFCPLDKPQVGDKFDAAV 140 Query: 76 EELVEPFLTRFVGKVQGK----NDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 ++V+ + G + IV D+P P + E + + Sbjct: 141 LKIVKRSRVLYAGNFLIEYSDFGQEFRIVADNPRFYLT-PIVNKASVPAELESNTKVAFQ 199 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA--------TEML 183 + + + + Q + D+ + + H++ E D V E Sbjct: 200 IDEY-DPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIVFEDNDVVEQQAAKLQFDEKE 258 Query: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 R+DLT L FVTID A+++D+DDA++ K D L VAIAD ++ S+LD Sbjct: 259 QSKPYRKDLTELAFVTIDPATSKDLDDAIYVKRT-DKGFVLYVAIADVAYYVQRNSELDI 317 Query: 244 AAKIRAFTNYLPGF-NIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A+ + + YLPG+ +PMLP LS++LCSL NE R V+ C + + + + E + Sbjct: 318 EARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDHEARLNFS-EVYP 376 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 ATI S+ + Y +V+DWLE++ + ES + E ++ + + E R + Sbjct: 377 ATIVSQRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSELIAEQRKKKGTIDLSHS 436 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + ++ + ++I A ++E M+ AN A L + Y VH Sbjct: 437 ETEVVVDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAWTLTNHKVHLPYRVHPRPSKK 496 Query: 423 NADALAALLKTHGLHVDA---EEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEIST 479 L + + + V + L+ D + R A Sbjct: 497 KLQMLLENIVELKITQPNFVLDTVTSTQIAAWLKENKDNPSYDIFVILLLRTLGKAFYIV 556 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---------KGETATRPQDEITVQ 530 P HF +G Y +TSPIR+Y D+ HRLL + + E ++I Sbjct: 557 NPLIHFSIGSHHYTHFTSPIRRYADLTVHRLLWMNLFTPERFTDTEREQLNAELEQICET 616 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 + + ER D+L +L + G F I I+ G+ +R+ +N I Sbjct: 617 INDTEIKINGCERTANDYLTTLYLSKQVG--QTFHGFISAITSFGIFMRMDENNFDGLIK 674 Query: 591 APFLHAVRDELVCSQENGTVQIKGET--VYKVTDVIDVTIAEVR-METRSII 639 + ++ +++ V T V+++ D + + E+ ++ R+I+ Sbjct: 675 ITSIP---EDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEIDTVQKRAIL 723 >UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma RepID=B3PMK9_MYCA5 Length = 718 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 148/658 (22%), Positives = 262/658 (39%), Gaps = 53/658 (8%) Query: 21 RAEGVVKATEKGFGFLEVD-------AQK--SYFIPPPQMKKVMHGDRIIAVIHSEKERE 71 E + T K GF+++D + S F+ P Q+K V+ D + A I+S ++ Sbjct: 79 EVENQISITNKRLGFIDLDNALETNNDENKCSAFVAPFQLKNVLDKDLVQAKIYSYQDEN 138 Query: 72 -----SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 +++ +G ++ K +R K K D Sbjct: 139 NKTLYKGVISNVIKHNCKNIIGFIEFKENRPIFNAFDERNKANFFFINTSNFPKIIKSTD 198 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA-----------P 175 + +S IT +D +A ++++ P Sbjct: 199 LVKCIILE---PNAKSVAIAFDSIITNLNDKNYVIKKIMAANDVKGGFGLEVLEKAATIP 255 Query: 176 DGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 + E D R DLT+L VTID T+D DDA+ L + +L + IAD + ++ Sbjct: 256 QEIIPEDYDN---RVDLTSLLTVTIDGLDTKDFDDAISCSKLENGNYKLFIHIADVSHYV 312 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 EG +DK A R + YLP IPMLP LS+ +CSL N +R L + L G Sbjct: 313 KEGDAIDKEALERGTSIYLPDKVIPMLPFALSNGICSLNPNVIRACLTLELELDNHGKNV 372 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + + +A+ I+S +L Y++V+D+ + E + +I + + Sbjct: 373 SS-KVYASLIKSDYRLTYNEVNDFFNQKIEVPNEIN---NLLSRAREISKILRAKKIKDG 428 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 V + + + I+ E ++ DIV A +++E+ M+ AN A ++++ IY + Sbjct: 429 YVDFEIEEPKIIM-EDNDIKDIVIRKDGEAEKLIEDFMVRANETIAEMMKELKIPSIYRI 487 Query: 416 HMGFDPANADALAALLKTHGL-HVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQS 473 H + AL LL G+ ++ + F + ++ A + +L + R Sbjct: 488 HDKPETLKLSALQELLGFVGMKNIQVPFDGSPKSFEIMVNKIKAIKLDDYLKMALLRTMQ 547 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG--------ETATRPQD 525 A+ S+ HFGL AY+ +TSPIR+Y D++ HRL++ I E + Sbjct: 548 KAQYSSNNIGHFGLASSAYSHFTSPIRRYPDLLLHRLIRKYILNGKFDPKNYEKVKDEIE 607 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 I +E + ER V D + ++F + + F A++V I + G + + A Sbjct: 608 AIAQMNSEAEKTAMTVERSVVDVMKSKFFEKFI--NKTFVAQLVSIEKFGAFFNIEEYQA 665 Query: 586 IAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 I ++ + G KV + I + E +I A+ V Sbjct: 666 SVLIRFEDDEDGLIKISSYEAKG-----KSKTLKVGSEYKIAITSIDHEKGNINAKLV 718 >UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_SPHWW Length = 769 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 161/619 (26%), Positives = 245/619 (39%), Gaps = 46/619 (7%) Query: 57 GDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 GDRI+A A P + + +G + DRL + P K A Sbjct: 122 GDRILARTEEAGSGWIAHPMKKLARGEALMLGILHRDGDRLWLRPVDKREKRDTLVSDA- 180 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 + GD +AE P + A +T+ + V + +H + P+ Sbjct: 181 ---GDADAGDLVLAERAGRPPR----ITARVTERLGDPFAPRSFSLVAIHKHGIPDVFPE 233 Query: 177 GVATEM-----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVA 227 V E LD G REDL L V ID A D DDA++A D + IVA Sbjct: 234 TVIEEAGLVTRLDLGEGREDLRDLPIVAIDPADARDHDDAIWAMPDDDPGNPGGFRAIVA 293 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ GS LD+ AK R + Y P +PMLP LS D+CSL+ E R + C +T Sbjct: 294 IADVSFYVRPGSALDREAKKRGNSVYFPDRVVPMLPEALSADICSLKHGEDRAAMVCHLT 353 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQ-VRLLAQICQR 346 + A+GT+ N F A + A + Y+ ++ +A+A+ ++ L + Sbjct: 354 VKANGTL-ANWRFARAVVRIAANIAYEDAQAAIDGAPVAGTWDKALADSALKPLWACWKA 412 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D P+ R +L EKG +L + R A+R+VE+ MIAAN+ AA+ L Sbjct: 413 LASARDAREPLDLDLPERRVVLDEKGRILSVAPRERLDAHRLVEDYMIAANVAAAKALEA 472 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLD 465 K +Y H AL L T + +V+ F + + + D + Sbjct: 473 KKAPVMYRDHEPPSREKLVALKDYLATFDMEFALGQVVRPATFNHILKRITDDAIRPQIM 532 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD 525 ++ R Q+ A + HFGL L +YA +TSPIR+Y D++ HR L ET + Sbjct: 533 EQVLRSQTQAYYAPRNAGHFGLALGSYAHFTSPIRRYADLLVHRSLVGAYGLETGKPRLE 592 Query: 526 -----------------------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 I +++ R AERD D A FL K G Sbjct: 593 GPGRSGDIVPRTALTQEEAERMTPIGELISQAERRAMEAERDTIDRYVAAFLSTKVGE-- 650 Query: 563 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTD 622 I + G + G +P L A R + + G+ Y Sbjct: 651 LLDTRITGVQPFGFFATVEGLGGDGLVPVSTLGAERFHYDEGAQALEGEESGDR-YTPGM 709 Query: 623 VIDVTIAEVRMETRSIIAR 641 + + + E S+ Sbjct: 710 KLRLRLVEANPINGSLRFE 728 >UniRef50_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVL2_RUBXD Length = 535 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 144/544 (26%), Positives = 232/544 (42%), Gaps = 36/544 (6%) Query: 94 NDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITF 153 V D + + P AR L + GD + R S E+ + I Sbjct: 7 RRGKYSVADPLFVDERRPILVARKLRRGAEAGDLVLVRARER----KGSLRGEVVRVIGP 62 Query: 154 GDDHFVPWWVTLARHNLEKEAPDGVATEML----DEGLVREDLTALDFVTIDSASTEDMD 209 D + A + + P GV E R DL L VTID +D D Sbjct: 63 SSDPRNVYEALFASIGVSRSFPRGVEEEAEAVAGRSFGERRDLRRLPTVTIDGEDAKDFD 122 Query: 210 DALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDD 269 DA+ D +L V IAD T ++ G LD+ A R + YLPG PMLP LS D Sbjct: 123 DAISILR-EDGGYRLWVHIADVTHYVDPGGALDRQALYRGNSVYLPGTVAPMLPARLSAD 181 Query: 270 LCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE 329 +CSLR + R + +++S +G + + + + I S A+L Y+ V +LE G+ + Sbjct: 182 VCSLRPHADRAAVTVEISVSGEGEVR-GWKVYRSLICSDARLTYEAVDAFLEGRGEIE-- 238 Query: 330 SEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIV 389 E VR ++ +R + + + + + E+G + P A ++ Sbjct: 239 ---QPELVRTAFELSRRLKTNAAVRGKLELESREPEYEVDEEGVPVAASMRPSTPARELI 295 Query: 390 EEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGF 449 EE MI AN+C AR LR + G ++ VH P + + LA L G+ V+ T + Sbjct: 296 EELMILANVCVARELRRRRG-AVFRVHERPSPEDLELLAERLAAVGVRVEP----TPENL 350 Query: 450 CKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHR 509 + R L ++ G+L + R A S H+GL LE Y +TSPIR+Y D++ HR Sbjct: 351 GTIARMLKSRALGYL---VLRSIPRALYSPGNVGHYGLALEDYTHFTSPIRRYADVLVHR 407 Query: 510 LLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIV 569 L G+ E+ ++ER + + ER ++ ++D+ G F +V Sbjct: 408 ALL----GDELPENLPEVAEHISEREWQSMICERTADEYTLMWLMRDRVGE--VFEGTVV 461 Query: 570 DISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGE--TVYKVTDVIDVT 627 + G+ V + + GA + A L + + +G V E Y+V D + V Sbjct: 462 STTSFGLFVEM-ETGATGLVHASKLPGWWE----LEPSGVVLSNDEIGASYRVGDRVLVE 516 Query: 628 IAEV 631 + ++ Sbjct: 517 LLDI 520 >UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group RepID=A9UUC9_MONBE Length = 951 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 137/696 (19%), Positives = 245/696 (35%), Gaps = 84/696 (12%) Query: 20 PRAEGVVKATEKGF--GFLEVDAQKS--YFIPPPQMKKVMHGDRIIAVIHSE-------- 67 +G ++ + + F++ F+P M + + GD + I E Sbjct: 232 KLVQGTLRISRENTQEAFVKPRDDPEHPVFVPGNLMNRAVDGDLVALQILPESQWQTPSG 291 Query: 68 ---------------------------KERESAEPEELVEPFLTRFVGKVQGKNDRLAIV 100 + + + + +V + G + ++ + Sbjct: 292 IIERPEGTHLVMDGTQDAEGELEDMQERTQRTGQVVGIVRRRWRPYCGILAANSNTAS-- 349 Query: 101 PDHPLLKDA---IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDH 157 P+ L +P R + G V + P + L + + D Sbjct: 350 PNLFLFTAKEATLPPIRFRSQQPDKLVGQQIVLAVDGWPT-NSKYPIGHLVRVLGPIGDV 408 Query: 158 FVPWWVTLARHNLEKE---------APDGVATEMLDEGLVREDLTALDFVTIDSASTEDM 208 V L H + E PD + REDL L+ +ID D+ Sbjct: 409 NTETEVVLLEHAVPFEPFSKAVLDCLPDATWLAAEQDLSRREDLRHLEVCSIDPPGCTDI 468 Query: 209 DDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSD 268 DDAL + LP+ ++ V IAD + +I + LD+ A R T YL I M+P LS Sbjct: 469 DDALHLRDLPNGHFEVGVHIADVSHFIKPNTALDQEAAKRGTTVYLSNRRIDMVPGLLSS 528 Query: 269 DLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQP 328 +LCSLR E R +C ++ I + F + I S+A L Y + +++ D Sbjct: 529 NLCSLRGGEERFAFSCIWEMTDQADII-STRFCKSIIRSRAALEYSEAQARIDDETDQT- 586 Query: 329 ESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANR 387 + + +R L + + R + P+ RF + E + +D+ + N Sbjct: 587 ---TLTDSIRRLNALAKIVKRRRIEAGALMLASPEVRFRIDTETHDPVDVQMKQLHDTNS 643 Query: 388 IVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL 446 +VEE M+ AN+ +AR + + + H P+N + L + G+ + L Sbjct: 644 LVEEFMLLANVSSAREIHKQFPTCAVLRRHPAPPPSNFEPLLKAAEAAGVTLSTTSSKEL 703 Query: 447 DGFCKLRR-ELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPI 499 + + E L R A+ H+GL Y +TSPI Sbjct: 704 AVSLDMAQPEGQPYMNTLLRILATRCMLPAQYFCSGTVPQTEFGHYGLASPIYTHFTSPI 763 Query: 500 RKYGDMINHRLLKAVIKGETATRPQ-------DEITVQMAERRRLNRMAERDVGDWLYAR 552 R+Y D++ HRLL A I G T P I + R R + A R + Sbjct: 764 RRYADLLVHRLLAACI-GADPTYPDLLNKDKIASICDNLNFRNRQAQYAARSSLELHTCL 822 Query: 553 FLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI 612 F K + + + I+ + + + V + G + EL + + + Sbjct: 823 FFKKRTTHEEAY---IIRVRKNAIAVLVPAYGLEGRVYFDAADGQAPELSYDENKMALTV 879 Query: 613 KGETVY---KVTDVID--VTIAEVRMETRSIIARPV 643 + + +V D + V + + ++ R V Sbjct: 880 TKDDQHINLRVFDKVKVQVQVDSSDPQREQMLVRLV 915 >UniRef50_Q6SG71 RNB-like family protein n=4 Tax=Bacteria RepID=Q6SG71_9BACT Length = 495 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 135/487 (27%), Positives = 232/487 (47%), Gaps = 17/487 (3%) Query: 164 TLARHNLEKEAPDGVATEMLD----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPD 219 + + + E + + E+ D + L R+DLT + F+TID A +D DDA+ Sbjct: 11 VIEENYIPFEWNEKIDNELADIKLNKNLPRKDLTKVPFITIDGADAKDFDDAVHCVKNKS 70 Query: 220 DKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279 L VAIAD + G+ LD A R + Y P IPMLP ++S++LCSL NE+R Sbjct: 71 S-FTLSVAIADVAELVKPGTALDNEAIERGTSIYFPSKVIPMLPEKISNNLCSLVPNEIR 129 Query: 280 PVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL 339 VL C + S G ++ + F A I+S ++ Y +V +L++ S+++ + +R Sbjct: 130 NVLICEIVFSNSGDLQ-SYNFLEARIKSHKRMTYIEVDKYLKSNSTL---SKSVEDSIRS 185 Query: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANIC 399 L+++ + R + + + + +G+V +I R +++++EEAM+AAN+C Sbjct: 186 LSELTHILLKKRSQRQALEIEGQEPLLRINNEGKVDEITLPKRLFSHQMIEEAMLAANVC 245 Query: 400 AARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCK-LRRELDA 458 AA + FG+Y +H + ++L G D+ + + LD + L + Sbjct: 246 AANFMNKHYKFGVYRIHEEPEELKLESLKNFFSIKGFS-DSYKKIPLDLINQCLSYAREK 304 Query: 459 QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 + L + + + AE ST+ HFGL LE Y+ +TSPIR+Y D++ HRL+K ++ Sbjct: 305 KLNKALQTVVLQSLKRAEYSTKEVGHFGLQLERYSHFTSPIRRYPDLMTHRLIKNILNKG 364 Query: 519 TA---TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 +E V+M++ R+ A R V + +LK G+D F A + I+ G Sbjct: 365 DLAINKEEIEEECVEMSDLERMAERASRQVTQQMICYYLKQYVGSD--FNAVVTGIAEFG 422 Query: 576 MRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 + + + I L + R + N K +++ I VTIA + E Sbjct: 423 LFAEIDNFYVSGLIHVTDLPSDR-YFYDKEANILKGKKTGRSFRLGQNILVTIANISPEE 481 Query: 636 RSIIARP 642 R I P Sbjct: 482 RKITLVP 488 >UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTA8_9BACT Length = 754 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 148/643 (23%), Positives = 264/643 (41%), Gaps = 23/643 (3%) Query: 17 SQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSE-KERESAE 74 + G++ + G+GF+ D + FIPP + ++G+ + I + K+ + Sbjct: 57 QELEVKTGILSLSVGGYGFVNPIDKSTTIFIPPNKTGAAVNGETVEVSITEQSKKGPVGQ 116 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA--RGLNHEFKEGDWAVAEM 132 ++E L G++Q + + ++P L+ IP + E KEGDW A++ Sbjct: 117 IINILESKLESLSGQLQIRKGQPWLIP----LRTGIPAVELSVESVPTETKEGDWIRAKL 172 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE---MLDEGLVR 189 + + A L+Q + DD + +L+ E D + + R Sbjct: 173 VSRDTQTGK-ITASLSQSLGNADDLTAEIDAIIDEFDLQSEYSDEAEEAASRIRQRKIAR 231 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDK-LQLIVAIADPTAWIAEGSKLDKAAKIR 248 DLT TID +D DDAL + K + + + IAD A+I S L + K R Sbjct: 232 RDLTKELITTIDPRDAKDFDDALSVHPAKNKKHITIGIHIADVAAYIGPRSTLMTSIKKR 291 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 AFT YLPG +PMLP+ L CSL NEV+P +T + N E F +TI+ + Sbjct: 292 AFTAYLPGRMLPMLPKVLVSKRCSLIENEVKPAHTVMITFDRESGEVINFERFHSTIKVR 351 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN-HALVFKDRPDYRFI 367 +L Y +V D+ + P + + + V+ L + + R + D P+ R + Sbjct: 352 KRLNYQEVQDYADANFSGDPWGKDVCKDVKTLYEFSHTLRKRREEIEQFIPLDAPEVRVM 411 Query: 368 LGE-KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 + + + + ++VEE M+AAN A+ L K G++ +H D A + Sbjct: 412 CDPVTMTINSLKKDSPSESKQMVEEFMLAANTVVAQELTSKAAPGLFRIHPEPDEEQAAS 471 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHF 485 + T V ++ + + P+ + R A S+ G HF Sbjct: 472 FSVDANTF-YGVSPGDITLRPNAIRFLNSIKGHPSAPAISMDFLRTMQRASYSSMKGLHF 530 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ---DEITVQMAERRRLNRMAE 542 GLG Y+ +TSPIR+ D++ H+ L + + D++ + R + A Sbjct: 531 GLGKNLYSHFTSPIRRLADLLVHQQLWNMEDKGGPVYTKDRLDDLAEIINTREAVTDEAY 590 Query: 543 RDVGDWLYARFLKDKAGTDTRF--AAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 R + +++ D+ A I +S MR+ + G A + L + + Sbjct: 591 RTTVNRFKLHYVEALEAGDSELECDALITRVSVKKMRLYIPHYGMYANVNFRDLDSDFFD 650 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 ++ V + T + D ++V I + R + P+ Sbjct: 651 ADV-EKGLVVGRRTGTTWSCGDTLEVKILGADFKMREFMVMPI 692 >UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q297C3_DROPS Length = 978 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 140/713 (19%), Positives = 259/713 (36%), Gaps = 101/713 (14%) Query: 19 TPRAEGVVKATEKGF--GFLEVDA-QKSYFIPPPQ-MKKVMHGDRIIAVIHSE------- 67 +G +A+ + + G + V+ +K I + + + + GD + + E Sbjct: 248 KKLLQGAFQASRENYLEGSVNVETYEKGILIQGRECLNRAVDGDLVAVELLPESEWSAPS 307 Query: 68 ---------------------------------------KERESAEPEELVEPFLTRFVG 88 + + +V ++ G Sbjct: 308 EIVLEEKNVYADDVPSEERAEEEKDMLKQVQQAAAAASAERTPTGRIVGIVRRKWRQYCG 367 Query: 89 KVQ----GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFY 144 +Q +R VP + I + + + + P + R Sbjct: 368 ILQPSLIENTNRHIFVPADRKIPR-IRIETRQAAKLQ---NQRIIVTIDTWP-RNSRYPQ 422 Query: 145 AELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEML--------DEGLVREDLTAL 195 + + D V L H++ + + V + + ++ R DL L Sbjct: 423 GHFVRSLGPLGDMATENEVILLEHDVPHCKFSEKVLSFLPKLPWSITAEDYAKRVDLREL 482 Query: 196 DFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLP 255 D ++D D+DDAL + LP+ ++ V IAD + +I G+ LDK A R T YL Sbjct: 483 DICSVDPPGCTDIDDALHCRELPNGNFEVGVHIADVSHFIRPGNALDKEAAARGTTVYLV 542 Query: 256 GFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQ 315 G I M+P LS +LCSL R +C + + + D F + I+SK + Y++ Sbjct: 543 GKRIDMVPELLSSNLCSLVGGVERFAFSCVWEVDKEANVIDK-RFHKSVIKSKRAMTYEE 601 Query: 316 VSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEV 374 +++ + IA+ +R L ++ + + R ++ + P+ RF + E E Sbjct: 602 AQVLIDDAT----QQSEIAKSLRHLNRLAKILKKRRMDNGALVLASPEIRFQVDSETHEP 657 Query: 375 LDIVAEPRRIANRIVEEAMIAANICAARVL-RDKLGFGIYNVHMGFDPANADALAALLKT 433 L++ A+ R N +VEE M+ ANI A + + + H P N D L + Sbjct: 658 LEVEAKQMRETNSMVEEFMLLANITVAEHIAAEFTECAVLRRHPKPPPTNFDPLVKAARY 717 Query: 434 HGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFG 486 G VD E L L K +E + + R A E H+G Sbjct: 718 QGFQVDTETGLVLSHSLDKCVKEDNPYFNTMIRILTTRCMMQAVYFISGSLQKEEFFHYG 777 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT------RPQDEITVQMAERRRLNRM 540 L Y +TSPIR+Y D++ HRLL A I ++ + +E+ + R ++ + Sbjct: 778 LAAPIYTHFTSPIRRYSDIMVHRLLAASIGADSTYAQLLERKSNEELCHNLNYRHKMAQY 837 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD- 599 A R F + G + ++ + + ++V + G + +D Sbjct: 838 AARASVGLNTHLFFR---GKEEDEEGYVLFVRKNALQVLIPKYGLEGTLYLKTDKDGKDG 894 Query: 600 -------ELVCSQENGTVQIKGETVYKVTDVIDVTIA--EVRMETRSIIARPV 643 + E Q G V+ D + V ++ ++ ++ R V Sbjct: 895 VERTKSEVIFTFNEEDHTQRCGNVVFHSFDPVSVRLSLDSSNVQHEKLVFRLV 947 >UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes scapularis RepID=B7QBQ1_IXOSC Length = 956 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 150/704 (21%), Positives = 259/704 (36%), Gaps = 105/704 (14%) Query: 20 PRAEGVVKATEKGF--GFLEVDAQ-----KSYFIPPP-QMKKVMHGDRIIAVIHSE---- 67 +G +A+ + + G + + +S I + + +H D ++ E Sbjct: 241 KYEQGKFQASRENYLEGNVVIGGDNEGESRSILIQGRGHLNRAVHDDLVVVETLPEEQWS 300 Query: 68 --------------------------KER------ESAEPEELVEPFLTRFVGKVQGKN- 94 K+R + ++ + G +Q N Sbjct: 301 LPSGLVLLDETQDEDEDKGDEEAKLSKKRAVSNKVPTGRIVGILRRKWRPYCGILQPSNI 360 Query: 95 ---DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYI 151 R VP IP + V + P + R L + + Sbjct: 361 KEATRHLFVPAERR----IPKIRIETRQADVLCRQRIVVSIDSWP-RDSRYPQGHLVKAL 415 Query: 152 TFGDDHFVPWWVTLARHNLEKE---------APDGVATEMLDEGLVREDLTALDFVTIDS 202 D V L H++ + P T E REDL L ++D Sbjct: 416 GEVGDRATENQVLLLEHDIPHQCFSRSVLDCLPSLPWTIGPKEEKNREDLRHLCICSVDP 475 Query: 203 ASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPML 262 D+DDAL + LP+ ++ V IAD + ++ G+ LDK A R T YL I M+ Sbjct: 476 PGCTDIDDALHCRELPNGNYEVGVHIADVSYFVRPGTALDKEAANRGTTVYLVDQRIDMV 535 Query: 263 PRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN 322 P LS +LCSLR E R + +S + + + +F + I+S+A L Y + +++ Sbjct: 536 PELLSANLCSLRGGEERLAFSAIWEVSPEAEVL-HTKFHKSIIKSRAALTYAEAQARIDD 594 Query: 323 TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEP 381 T ++ + +R L ++ + R + + + RF + E + +D+ + Sbjct: 595 TS----LNDELTLGLRGLNRLAKILKAKRIANGALTLASSEVRFHVDSETHDPIDVQTKQ 650 Query: 382 RRIANRIVEEAMIAANICAARVL-RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA 440 N +VEE M+ AN AR + ++ + H PAN + L + G V+ Sbjct: 651 LLETNSMVEEFMLLANASVARHIFQEFPECALLRRHPAPAPANLEPLVKAGHSKGFVVEV 710 Query: 441 EEVLTLDGFCKLRRELDAQPTGF---LDSRIRRFQSFAEI------STEPGPHFGLGLEA 491 E L L L R +D + F L R + A + E H+GL + Sbjct: 711 ESGLRLAE--SLDRAVDPEQPYFNVMLRMVATRCMARALYFCSGCVAPEDFDHYGLAMPF 768 Query: 492 YATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DEITVQMAERRRLNRMAERD 544 Y +TSPIR+Y D++ HRLL V G AT P E+ + R + + A R Sbjct: 769 YTHFTSPIRRYSDLMVHRLL-GVCVGAEATYPDLVHKNKCQELCNNLNYRHNMAQYAGRS 827 Query: 545 VGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV----RDE 600 F +DK + + + VR +N +P L A D Sbjct: 828 SVALYTQAFFRDKVLDEEGYV----------LFVR--ENALQVLMPRFGLEATLFLKEDG 875 Query: 601 LVCSQENGTVQIKGETVYKVTD-VIDVTIAEVRMETRSIIARPV 643 QE T G T+ + V+ +++ ++ + ++ + V Sbjct: 876 WSYDQEANTQTCGGVTLRQFDRLVVQLSVDSRNVQHQKVVVKLV 919 >UniRef50_B0EIJ5 Exosome complex exonuclease RRP44, putative n=2 Tax=Entamoeba RepID=B0EIJ5_ENTDI Length = 901 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 123/689 (17%), Positives = 235/689 (34%), Gaps = 85/689 (12%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGF----LEVDAQKSYFIPP-PQMKKVMH 56 F N L + +L S+ +G V+ F F + ++ + + + + Sbjct: 208 FYPNHLTKEEITRLISEKKLVQGSVRMNR--FNFKEATVYTTEKEEILVSGLEDINRAVE 265 Query: 57 GDRIIAVIHSEK---------------------------------ERESAEPEELVEPFL 83 GD + I + + + + +++ Sbjct: 266 GDIVALQILPKDQWKKESNTINDDYEKNEKEMNNTVHMENAMEVEGKPTGKIVGIIKRNW 325 Query: 84 TRFVGKVQGKNDRLA-----IVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 G ++ ++ +P P + + + + Sbjct: 326 KPLPGYIKQESSGNYSTNLLFLPTDKRF----PPIRIKARDPAKLASQRILVLIDAW-DT 380 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVAT-------EMLDEGLV-R 189 + + D L H + E P+ V E+ D+ L R Sbjct: 381 TSKYPTGHYVATLGNVGDKASETEAILELHEIPHYEFPEIVLKCLPLLPFEITDDYLKGR 440 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 D + +ID D+DDAL K LP+ ++ V IAD + ++ + LD+ A R Sbjct: 441 YDFRKENVCSIDPPGCTDIDDALHCKILPNGNYEIGVHIADVSCFVKPHTALDEEAAKRG 500 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 T YL I MLP+ L++ +CS+ N + L + + N + + S Sbjct: 501 TTVYLADRRIDMLPKPLTEVICSITQNTDTLTFSVVWELDKNANVI-NCTYHKGIVHSYR 559 Query: 310 KLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG 369 Y Q +++ + A+Q+R++ + ++ + R + + + + Sbjct: 560 AYAYGQAQAVIDDKSNQS----EYAQQLRVMLMLSKKLKQKRIDAGALMLASSEIKIEKD 615 Query: 370 EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADALA 428 E+ + + N +VEE M+ AN+ A+ + D + H D + LA Sbjct: 616 EQFNPIGVKEYQTYETNSMVEEYMLLANVWVAKKIYDAFPHCAMLRRHPPPDEHTFEWLA 675 Query: 429 ALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEP 481 +LK G +D L + K D + + R A+ S Sbjct: 676 NVLKHKGKSLDFSSSKALSESLDKCGTNEDPVVGRIMRILVTRCMQQAKYFSSGYFSYNE 735 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-----ATRPQDEITVQMAERRR 536 H+GL E Y +TSPIR+Y D++ HRLL I + + EI + R Sbjct: 736 FRHYGLAAEIYTHFTSPIRRYADVMVHRLLAQAIGFDQIDLTMSKEKMKEIADNINHRHT 795 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHA 596 + + A R FLKDK + ++ + + G+ V + G + L Sbjct: 796 MAQHAGRASTQMYTLIFLKDK---EVTVDGYVIKVMKNGIVVNIPQYGLEVIV----LID 848 Query: 597 VRDELVCSQENGTVQIKGETVYKVTDVID 625 + +V + T+ + V D + Sbjct: 849 QKYGMVFDENENTLGNMNIK-FGVFDRVK 876 >UniRef50_A0CC06 Chromosome undetermined scaffold_166, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CC06_PARTE Length = 897 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 130/583 (22%), Positives = 224/583 (38%), Gaps = 54/583 (9%) Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 + +++ F G V+ VP + I + ++ + + Sbjct: 324 GKVVSVLQRTERHFCGHVENN----IFVPADGRYPNFIL----KHSKYDTLQDKKIQVQF 375 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE-KEAPDGVATEML-------- 183 P+ D+ +L + + D ++ V L H +E +E V + Sbjct: 376 VDWPVWSDKPL-CKLKKVLGKAGDMYIEGNVILLEHQVEIREFSHQVLACLPIEGDKYRI 434 Query: 184 --DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 E R DL + +ID +D+DD L + L ++ ++ V IAD + ++ S + Sbjct: 435 SEQEIKRRMDLRDILVCSIDPVGCKDIDDTLHCRRLENNLYEVGVHIADVSHFVKPDSAI 494 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK A R T YL MLP+ L+++LCSL +N R + + I+D ++F Sbjct: 495 DKEAAHRCTTVYLVDRRTDMLPKLLTENLCSLVSNVDRLAFSVIWIMDDQANIKD-VKFG 553 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 + I S A L Y Q + ++N D + + + +RLL + ++ + R + + Sbjct: 554 KSVIRSVASLHYQQAQEMIDNPND----NSQLTQGIRLLNMLAKKLKQLRTDQGALSLAS 609 Query: 362 PDYRFIL-GEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRDKLGFGIYNVHMGF 419 +F E D+ N +VEE M+ AN A ++L+ + H Sbjct: 610 NQVKFSFDDETHNPSDVRMYQLYDTNSLVEEFMLLANCSVANQILQRFPSISVLRRHQEP 669 Query: 420 DPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI- 477 L L+ G + L + +++R D+ + R + A Sbjct: 670 KMKQLKELQILMNDLGYQFSFDTSKLLSESLDQIQRPNDSFFNKLIRMITTRCMNEALYV 729 Query: 478 -----STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP------QDE 526 H+GL E Y +TSPIR+Y D++ HRLL A I E+ Sbjct: 730 CTADVDYPELYHYGLAAELYTHFTSPIRRYADVLVHRLLAASIDLESLPPSMSNKIRMTR 789 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 I ++ R R+ R A R D+ F K++ + A I I L D Sbjct: 790 ICDKLNMRHRMARFASRASSDYHTYLFFKNRPQQIDQ--AIITGI--------LTD-KVT 838 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA 629 IP L D + + N +Q T Y++ D I V I+ Sbjct: 839 VMIPRYVLEGTIDAQIIDRMNIIIQ---GTRYRIFDYIQVEIS 878 >UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metazoa RepID=RRP44_HUMAN Length = 958 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 137/711 (19%), Positives = 269/711 (37%), Gaps = 101/711 (14%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGF--------GFLEVDAQKSYFIPP-PQMKKVMHGD 58 L++L+Q + S +G +A+ + + G + + K + + + +H D Sbjct: 234 LSKLQQGIKS-GTYLQGTFRASRENYLEATVWIHG--DNEENKEIILQGLKHLNRAVHED 290 Query: 59 RIIAVIHSEKE--------------------------------------RESAEPEELVE 80 + + + + + + +++ Sbjct: 291 IVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEETERMLKTAVSEKMLKPTGRVVGIIK 350 Query: 81 PFLTRFVGKVQGKN----DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 + G + + R P IP EG + + P Sbjct: 351 RNWRPYCGMLSKSDIKESRRHLFTPADKR----IPRIRIETRQASTLEGRRIIVAIDGWP 406 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEML--------DEGL 187 + R + + + V L H++ + V + + + Sbjct: 407 -RNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMK 465 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 REDL L ++D D+DDAL + L + L++ V IAD + +I G+ LD+ + Sbjct: 466 NREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESAR 525 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R T YL I M+P LS +LCSL+ + R +C ++ + I +F + I S Sbjct: 526 RGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEIL-KTKFTKSVINS 584 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 KA L Y + +++ ++ I +R L ++ + + R + P+ RF Sbjct: 585 KASLTYAEAQLRIDSAN----MNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFH 640 Query: 368 LG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANAD 425 + E + +D+ + R N +VEE M+ ANI A+ + ++ + H P+N + Sbjct: 641 MDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYE 700 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR----RFQSFAEIS--- 478 L ++ L + + +L + ++ +L++ +R R A Sbjct: 701 ILVKAARSRNLEIKTDTAKSLAES---LDQAESPTFPYLNTLLRILATRCMMQAVYFCSG 757 Query: 479 -TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DEITVQ 530 H+GL Y +TSPIR+Y D+I HRLL AV G T P+ +I Sbjct: 758 MDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLL-AVAIGADCTYPELTDKHKLADICKN 816 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDK-AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R ++ + A+R + F K K ++ + I+ + + + V + G + Sbjct: 817 LNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY---ILFVRKNAIVVLIPKYGLEGTV 873 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA--EVRMETRSI 638 +L+ E +++I +TV+ V D + V I ++ + I Sbjct: 874 FFEEKDKPNPQLIYDDEIPSLKI-EDTVFHVFDKVKVKIMLDSSNLQHQKI 923 >UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23DE7_TETTH Length = 946 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 131/607 (21%), Positives = 223/607 (36%), Gaps = 46/607 (7%) Query: 60 IIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA---- 115 ++ I + +++ F G+V + L +P L++ IP Sbjct: 331 VVEKIKKLNLNPTGRVVGVIKRIQRYFCGEVTPEAINLPNLPSGIELREFIPADGRFPHF 390 Query: 116 --RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE-K 172 R N +G K + I D V L HN+E + Sbjct: 391 YLRTTNGSQLQGKKIQIGFDNW-SKSSKYPLGHFKMLIGDSGDTKAEGDVILLEHNVEYR 449 Query: 173 EAPDGVATEMLD----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKL 222 V + E R DL ++ +ID +D+DDAL +LP+ Sbjct: 450 AFSKQVLDCLPPQDDKWQIPQSEIKKRVDLRGINVCSIDPPGCKDIDDALHCISLPNGNF 509 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 ++ V IAD + ++ + +DK A+ R T YL MLP+ L++ LCSL+ + R Sbjct: 510 EVGVHIADVSYFVRPDTAIDKEAQNRCTTVYLVDRRTDMLPKLLTETLCSLKDDGDRLAF 569 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ 342 + + D I + + + I S A L Y + +++ D + + + +R L Sbjct: 570 SVVWVMDKDANIIE-TRYHKSIIRSVASLNYGKAQSMIDDVND----NSELTKSIRNLNM 624 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFIL-GEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 + ++ + R + + +F E +D+ N ++EE M+ N+ A Sbjct: 625 LAKKLKQKRIENGALSLASTQVKFTFDDETHNPVDVQFYQMYETNSLIEEFMLLGNVAVA 684 Query: 402 RVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQ 459 + I H P L+ +L+ G ++D L D K+ R D Sbjct: 685 EKIVSHFPSISILRQHSQPKPKQIKELSQILQKIGFNLDYSSNRNLADSLDKVNRPNDHF 744 Query: 460 PTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 + R + A H+GL Y +TSPIR+Y D++ HRLL A Sbjct: 745 FNKLVRIMTTRSMNEATYFCTADADYPEFYHYGLAAPLYTHFTSPIRRYADVLVHRLLAA 804 Query: 514 VIKGETATR------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 I E +I +M R R+ R A R D+ F KDK + A Sbjct: 805 AIDIEAIPAYMSNKLKMAKICEKMNMRNRMARFASRSSSDYNTYLFFKDKQIEEV---AM 861 Query: 568 IVDISRGGMRVRLVDNGAIAFI-----PAPFLHAVRDELVCSQENGTVQIKGETVYKVTD 622 + IS+ G V + G I + EL +Q + +K+ D Sbjct: 862 VSSISKTGATVVVPRYGLEGQIKFSEKDLKENEKLLQELKQNQSLIIDFVVNGNRHKLFD 921 Query: 623 VIDVTIA 629 + V ++ Sbjct: 922 YLKVRVS 928 >UniRef50_B6G9G5 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9G5_9ACTN Length = 732 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 154/712 (21%), Positives = 244/712 (34%), Gaps = 116/712 (16%) Query: 20 PRAEGVVKATEKGFGFLEVDAQKSYF-IPPPQMKKVMHGDRIIAVIH-SEKERESAEPEE 77 P G V+ + EV+ + + + M++ M GDR+ +H + A E Sbjct: 2 PGLTGTVRVYDAR---AEVETAEGVYRLGARSMREAMPGDRVYVSLHRGRGGQRRAVVEH 58 Query: 78 LVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG--LNHEFKEGDWAVAEMRRH 135 +++ + VG A+ P +K + + GD A + + Sbjct: 59 VIDRAVAAIVGVFAPAGPLGAVCPLDARIKQDFFVLPSDDSPARLGVEPGDIVSARIVEY 118 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGL-- 187 P + + L + I ++ + +AR+ L P E +DE L Sbjct: 119 PSRTESGVV-TLERRIGDANEPSLGIECIMARYGLADGYPQAAIDEAETLCVDVDEALKD 177 Query: 188 -VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 +R D+ +TID D DDA+ L V IAD + ++A S +D A+ Sbjct: 178 PLRRDIRDRFLLTIDPVDARDFDDAISVARTVHGGWMLGVHIADVSHYVAWESAVDLEAR 237 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 R+ + YL +PMLP L +DLCSLR E R + + L A G + E + + I Sbjct: 238 RRSTSVYLADRVLPMLPERLCNDLCSLRPQEDRLAVTVDIELDAQGRVR-AYEAYPSVIR 296 Query: 307 SKAKLVY----------------------------DQVSDWLENTGDWQPESEAIAEQ-- 336 S+ ++ Y V E+ Q E A Sbjct: 297 SRVRMDYGAADALLAGACEPQGAEKGTAGRSDSSDTAVDVMREDARTAQGADEGAARHVS 356 Query: 337 -------------------VRLLAQICQRRG-------EWRHNHALVFKDRPDYR----- 365 +R A+ ++ N + R + R Sbjct: 357 DTGGAVGAPEENRHADEATLRRAAEAAHTARQCGVDLVQFLKNADALASARREIRRKRGS 416 Query: 366 ---------FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 +L + G +DIV R A +VEEAM+ AN C A + D+ Y VH Sbjct: 417 IDFETPEVHVLLDDAGLPVDIVTRERSAATSLVEEAMLLANECVAEFISDRDLTAAYRVH 476 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-----FLDSRIRRF 471 P A A L G V + G + A G +++ + R Sbjct: 477 EEPSPDTLAAAAKTLAELGAIDGGLAVGIMAGEPRAMAAAVADAHGTPYAPLVNALLLRA 536 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ------- 524 Q A +E G H+ LG AY +TSPIR+Y D+I HR+LK + + Q Sbjct: 537 QQRAVYRSENGGHYALGARAYCHFTSPIRRYPDLIVHRVLKVALAKRDLGKRQAAQRAPQ 596 Query: 525 -------------DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 ++ Q + R A A++ + G R+ I I Sbjct: 597 LIGTGAQSLVQICPQLCRQASALERDADAAASASQKVKVAQYFAGRMGE--RYTGSISWI 654 Query: 572 SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDV 623 S G VRL GA + L + V TV ++ Sbjct: 655 SDMGAFVRLDGTGAEGLVRMASLGNEWWD-YDDIRLRLVGESTGTVIELGQR 705 >UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota RepID=Q16PB6_AEDAE Length = 970 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 141/708 (19%), Positives = 262/708 (37%), Gaps = 91/708 (12%) Query: 14 QLHS---QTPRAEGVVKATEKGF--GFLEVDA-QKSYFIPPP-QMKKVMHGDRIIAVIHS 66 Q+H + +G A+ F G + V++ ++ I + + + GD + + Sbjct: 232 QIHEGIKKGELLQGAFFASRDNFLEGNVRVESIEEPVLIQGRLNLNRAVDGDVVAIKLLP 291 Query: 67 E-----------------------------------KERESAEPEELVEPFLTRFVGKV- 90 + +A +++ ++ G + Sbjct: 292 KSEWKCPSGVVLVDEQAVDNEAVETADPEFEQEDGADRVPTATVVGIIKRKWRQYCGILA 351 Query: 91 ---QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAEL 147 + R + + I + V + P + + Sbjct: 352 ANPMASSTRHLFIASDRNIPR-IRIETRQSAQL---ITQKIVVAIDYWP-RHSKYPIGHF 406 Query: 148 TQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEML--------DEGLVREDLTALDFV 198 + + + V L H++ + +++ +E R DL + Sbjct: 407 VRALGGIGEKDTENEVILLEHDVPHGSFSAEIQSQLPKLPWTVDPEEYRKRVDLRDITIC 466 Query: 199 TIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFN 258 ++D D+DDAL A+ L + +++ V IAD T +I G+ LDK A +RA T YL Sbjct: 467 SVDPPGCTDIDDALHARRLDNGNIEVGVHIADVTHFIKPGTPLDKEAGLRATTVYLVDKR 526 Query: 259 IPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSD 318 I M+P LS +LCSLR E R +C L DG N +F + I+SKA L Y + Sbjct: 527 IDMVPDVLSSNLCSLRGGEERLAFSCIWELD-DGANIINTKFHKSVIKSKAALTYQEAQL 585 Query: 319 WLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDI 377 +++ ++ A+ +RLL ++ + R ++ + P+ RF + E + +D+ Sbjct: 586 IIDDPT----QTNQTAQSLRLLNKLAKILKRRRIDNGALVLASPEIRFNIDSETHDPIDV 641 Query: 378 VAEPRRIANRIVEEAMIAANICAARVLR-DKLGFGIYNVHMGFDPANADALAALLKTHGL 436 VA+ N +VEE M+ AN+ A ++ + + H AN D L G Sbjct: 642 VAKKLLDTNSMVEEFMLLANVSVAAKIQSEFPECAMLRRHPCPPDANFDPLKKAASYQGF 701 Query: 437 HVDAEEVLTLDGFCKL-RRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGL 489 +D L L + + L R A + H+GL Sbjct: 702 QIDTSCGKNLATSLDLAVKPDNPYFNTLLRILATRCMMQAVYFISGTIQQQEYFHYGLAS 761 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DEITVQMAERRRLNRMAE 542 Y +TSPIR+Y D+I HRLL A I G AT P ++ + R R+ + A Sbjct: 762 PIYTHFTSPIRRYADVIVHRLLAACI-GADATYPALLDKQASSQLCNNLNYRNRMAQYAG 820 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA--FIPAPFLHAVRDE 600 R F +D+ + + I+ + + ++V + G ++ ++ + Sbjct: 821 RASVALHTHLFFRDRTEDEEGY---ILFVKKNAIQVIIPKYGLEGTIYVAGKNNEKLKKD 877 Query: 601 --LVCSQENGTVQIKGETVYKVTDVIDVTIA--EVRMETRSIIARPVA 644 E Q G+ + D I V ++ ++ + ++ V Sbjct: 878 GPSFVYNEETQTQSCGDVEFHAFDPITVRLSLDSTNVQHQRLVFELVT 925 >UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_HUMAN Length = 796 Score = 417 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 137/711 (19%), Positives = 269/711 (37%), Gaps = 101/711 (14%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGF--------GFLEVDAQKSYFIPP-PQMKKVMHGD 58 L++L+Q + S +G +A+ + + G + + K + + + +H D Sbjct: 72 LSKLQQGIKS-GTYLQGTFRASRENYLEATVWIHG--DSEENKEIILQGLKHLNRAVHED 128 Query: 59 RIIAVIHSEKE--------------------------------------RESAEPEELVE 80 + + + + + + +++ Sbjct: 129 IVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEETERMLKTAVSEKMLKPTGRVVVIIK 188 Query: 81 PFLTRFVGKVQGKN----DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 + G + + R P IP EG + + P Sbjct: 189 RNWRPYCGMLSKSDIKESRRHLFTPADKR----IPRIRIETRQASTLEGRRIIVAIDGWP 244 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEML--------DEGL 187 + R + + + V L H++ + V + + + Sbjct: 245 -RNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMK 303 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 REDL L ++D D+DDAL + L + L++ V IAD + +I G+ LD+ + Sbjct: 304 NREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESAR 363 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R T YL I M+P LS +LCSL+ + R +C ++ + I +F + I S Sbjct: 364 RGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEIL-KTKFTKSVINS 422 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 KA L Y + +++ ++ I +R L ++ + + R + P+ RF Sbjct: 423 KASLTYAEAQLRIDSAN----MNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFH 478 Query: 368 LG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANAD 425 + E + +D+ + R N +VEE M+ ANI A+ + ++ + H P+N + Sbjct: 479 MDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYE 538 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR----RFQSFAEIS--- 478 L ++ L + + +L + ++ +L++ +R R A Sbjct: 539 ILVKAARSRNLEIKTDTAKSLAES---LDQAESPTFPYLNTLLRILATRCMMQAVYFCSG 595 Query: 479 -TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DEITVQ 530 H+GL Y +TSPIR+Y D+I HRLL AV G T P+ +I Sbjct: 596 MDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLL-AVAIGADCTYPELTDKHKLADICKN 654 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDK-AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R ++ + A+R + F K K ++ + I+ + + + V + G + Sbjct: 655 LNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY---ILFVRKNAIVVLIPKYGLEGTV 711 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA--EVRMETRSI 638 +L+ E +++I +TV+ V D + V I ++ + I Sbjct: 712 FFEEKDKPNPQLIYDDEIPSLKI-EDTVFHVFDKVKVKIMLDSSNLQHQKI 761 >UniRef50_A9EZ35 Ribonuclease R n=2 Tax=Myxococcales RepID=A9EZ35_SORC5 Length = 648 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 164/656 (25%), Positives = 249/656 (37%), Gaps = 54/656 (8%) Query: 22 AEGVVKATEKGFGFLEVDAQKS-----------------YFIPPPQMKKVMHGDRIIAVI 64 G + +GFGFL ++A FI PP + + GD + AV+ Sbjct: 5 VRGRISVNPRGFGFLNIEASPEKAGGPGRPGWAALGSATAFIAPPDLNPFLDGDVVDAVV 64 Query: 65 HSEK-ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 + R SA LV+ + G V R + D + P + G + Sbjct: 65 VEAEPGRFSASQLALVQRDRSELFGTVVSHAKRPHLRVDRLVSNTDWPFKP--GSADDLP 122 Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML 183 EG VA + + + G D + LAR+ + V Sbjct: 123 EGAAVVATI--------EGAAVVPARVVASGADLGIERC--LARNGVRAVFSGEVLEASR 172 Query: 184 ----------DEGLVREDLTALDFVTIDSASTEDMDDALFAKA-LPDDKLQLIVAIADPT 232 + R DL + VTID+ T D+DDA+ PD L+++V+IAD Sbjct: 173 AAVAAVSVERELARGRRDLRDVITVTIDAPVTTDIDDAVSVLPAGPDGALRVLVSIADVD 232 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 A++ EGS LD A+ R + YL G IPMLP +S + SL R + + + +G Sbjct: 233 AFVPEGSPLDLEARARGTSVYLAGRVIPMLPDAISSEAASLLPGVDRLAVTVELRIDPEG 292 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 I +I+ + I S A+L YD V ++L TG EA VR L R R Sbjct: 293 GIT-SIDLHESVIRSHARLSYDAVEEFL-TTGRSAGIPEAARPVVRWLRTAAARLSTVRA 350 Query: 353 NHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 V DR + L E E + A+R++E M+AAN A L + Sbjct: 351 ARGGVELDREEAYVTLDAETREPTAVSPRSDTGAHRLIERLMVAANEAVASWLVARGLPC 410 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRR 470 ++ VH AL G+ L+ G + + + + + Sbjct: 411 VFRVHDEPTEERVRALEQFAHNFGVEAGFGARLSPLGLAAFEAQYRGSELAPAIRTVVGK 470 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE---- 526 A + G HFGLG Y +TSPIR+Y D+ HR++K ++G R + E Sbjct: 471 ALGPARYTGAGGLHFGLGAPLYLHFTSPIRRYADLAVHRVVKRYLQGRRDQRVEAEALAS 530 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + + R R AE + L AR + G + IV I G+ V++V++GA Sbjct: 531 LAHHLNARARSAAKAETERHRMLVARLFASRVGEEI--EGYIVSIKPFGLVVQMVESGAT 588 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 I L A+ + Y V + I IA E + P Sbjct: 589 GTI---ALEALPGGPYRIDAAAQALVGASRRYGVGEPIRAAIAATNEELGRVDLVP 641 >UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 Tax=Caenorhabditis RepID=RRP44_CAEEL Length = 961 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 142/695 (20%), Positives = 252/695 (36%), Gaps = 98/695 (14%) Query: 24 GVVKATEKGF--GFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERE--------- 71 G + + + + +D Q S+FI + ++GD + + E + Sbjct: 254 GNFSVSRENYREATVIIDDQLTSWFITGNNCNRAVNGDTVAVQLLPEDQWTAPEKKIRLR 313 Query: 72 -------------------------------------SAEPEELVEPFLTRFVG-----K 89 +A+ +++ + G Sbjct: 314 DVEEYVKTADDMGNEDEENDDENDEPKAKKSKKMTVSTAKVVGIIKRNWREYCGMLLPST 373 Query: 90 VQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQ 149 V+G L + + + I A L+ V + P + + + Sbjct: 374 VKGARRHLFCPAERLIPRIRIETEQAETLSQ-----QRIVVAIDHWP-RDSKYPLGHYVR 427 Query: 150 YITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLDEG-----------LVREDLTALDF 197 I V L H++ + V + E L R DL L Sbjct: 428 SIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEWEPDLTENRGPLPRVDLRDLTI 487 Query: 198 VTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGF 257 ++D D+DDAL K + +D ++ V IAD T ++ G+ +D A +R T YL Sbjct: 488 CSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTHFVRPGTAIDDEAALRGTTVYLCDR 547 Query: 258 NIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVS 317 I MLP LS +LCSLR E R +C T+++ I+ ++++ + I+SKA L Y++ Sbjct: 548 RIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSADIQ-SVKYHKSLIKSKAALTYEKAQ 606 Query: 318 DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLD 376 + +++ E +A +R L ++ + R + + + RF + E Sbjct: 607 EIIDDPK----EQNDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDMDWESRTPKK 662 Query: 377 IVAEPRRIANRIVEEAMIAANICAARV-LRDKLGFGIYNVHMGFDPANADALAALLKTHG 435 ++ + + +VEE M+ ANI A L + + H + L + G Sbjct: 663 VMEKQHLDTHSMVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESYKPLVEAARHRG 722 Query: 436 LHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI---STEPGP---HFGLG 488 + E L D + + + L R + A T P P HFGL Sbjct: 723 FEIIVESGKGLADSLNRCVDKKNPMLNRLLRMLTTRCMTQAVYFSAGTVPVPQYQHFGLA 782 Query: 489 LEAYATWTSPIRKYGDMINHRLLKAVI------KGETATRPQDEITVQMAERRRLNRMAE 542 Y +TSPIR+Y D+I HRLL A I G +I + R + + A Sbjct: 783 CAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSGLLNQARCTKICTNINYRHKQAQYAG 842 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELV 602 R R+ K K T F ++ + G++V + G + I + Sbjct: 843 RASVQLNVVRYFKGKVETCEGF---VMGVRNNGIQVFVPKYGLESIIVLQT--SAASGTT 897 Query: 603 CSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 E +V++ G+ V K + + V I+ V + + Sbjct: 898 IDVEEMSVKVNGDVVIKELEPVTVRIS-VNEKNQQ 931 >UniRef50_C0QWY3 Exoribonuclease R n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QWY3_BRAHW Length = 580 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 118/525 (22%), Positives = 215/525 (40%), Gaps = 26/525 (4%) Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG---VATEMLDE--- 185 + + K + + + D + +N++ + + +A E+ ++ Sbjct: 66 INKLEGKEEAPKTVKSVRINVDPKDAKSDSKIIAKSYNIKLDFSEELLKIAEEINNKADF 125 Query: 186 ---GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 R DL L +TIDS S++D+DDA + ++ ++ V I+D + +I S LD Sbjct: 126 TNIEADRVDLRNLKTITIDSESSKDLDDAFSIEKTDNN-YKVYVHISDVSHFIELDSPLD 184 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A+ R + YL M P LS+++ SL NE R L ++ DG I + Sbjct: 185 LEARARGNSTYLIDKVYNMFPEVLSNNIISLNENEDRFALTFITDINNDGEILSS-SVCK 243 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I S KL YD + + + + + E + I + R V + Sbjct: 244 SVIRSDRKLSYDYAEKLI---KKEESDEDWLLELIDNALNIKNVLYKKRKEGRGVEFENQ 300 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 D + +L ++G ++ AE ++ + I+EE M+ AN A L G I+ H D Sbjct: 301 DIKIVLNDEGMPIEFYAEEKKESMAIIEELMLLANSKVAEKLSSYDGV-IFRYHGLPDEY 359 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPG 482 + L T G + T D + Q L + R + + S Sbjct: 360 RFNNFKILAHTKGYELKENPDKTYDIKGFIGNVKGKQEENLLIPVLLRSMTPSSYSIVNK 419 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK------GETATRPQDEITVQMAERRR 536 HFGLGL+ Y +TSPIR+Y D++ HR++K I E + ++ + Sbjct: 420 SHFGLGLDYYTYFTSPIRRYADLLIHRIVKDTILSNNNSINEKLKNICKDSIESLSLLDK 479 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHA 596 ++ AE+ + AR++KD+ G + + + I+ G+ V + FI A ++ + Sbjct: 480 TSKKAEKYLIQIKAARYMKDRLGDE--YYGAVSSITPKGIYVEIEGLEIEGFIEATYVGS 537 Query: 597 VRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 Q+ +V + Y++ D + V +A +E I Sbjct: 538 N---YRFYQDMQSVYVDKVKAYELGDRVKVLVASSNVENGKIFFS 579 >UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PF93_USTMA Length = 1423 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 120/575 (20%), Positives = 209/575 (36%), Gaps = 41/575 (7%) Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD--- 126 +E + E + + +V+ + + P + + +EG Sbjct: 722 KEKQQAERVQREGASALAPEVKPRPKIIWFRPTDKRVPLIAIPADQAPEDFWAEEGQESF 781 Query: 127 ---WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLA----------RHNLEKE 173 VA ++R P+ F L + I + L K Sbjct: 782 NSRLFVACIKRWPITSLHPF-GALVEEIGVIGNVEAETQALLKDTLSSATEAFTEGALKC 840 Query: 174 APDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 P E R D + TID + +D+DDA+ L + ++ V IAD + Sbjct: 841 LPPLPWKIPEKEYKTRRDFRSHRVFTIDPETAKDLDDAVHVVRLDNGNFEVGVHIADVSH 900 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ GS LD+ A+ R + YL IPMLP LS++LCSL N R + T++ D Sbjct: 901 FVKLGSSLDREARKRGTSVYLVQRAIPMLPPTLSEELCSLVPNVERLAFSAVFTMNKDAQ 960 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA-----EQVRLLAQICQRRG 348 + + F + I+S AKL Y +E + + EA + + +L Q+ Q+ Sbjct: 961 VISSW-FGKSIIKSCAKLAYADAQKVIEGGQLSKEKLEAHRPKEIGDDILILHQLAQKMR 1019 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 R + D F L E G D A+R++EE M+ AN+ A+ + L Sbjct: 1020 ARRFKTGALRIDNVKLSFKLDENGLPTDASVYCSYDAHRLIEEFMLQANMAVAQQIAAGL 1079 Query: 409 G-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR 467 + H D K+ G +D L L + D L + Sbjct: 1080 PELALLRRHEKPLDRRLDGFLRRAKSMGYDIDTSSGGALHR--SLAKIKDDSARQALQAL 1137 Query: 468 IRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 + + A+ H+ L + Y +TSPIR+Y D++ HR L+AV+ + Sbjct: 1138 VTKSMMQAKYFCTGMVDIAKYHHYALNVPLYTHFTSPIRRYADLMVHRQLEAVLVEQDKF 1197 Query: 522 ----RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKD---KAGTDTRFAAEIVDISRG 574 +I Q ++ +MA+ + D + G R +A ++ + Sbjct: 1198 GVDREAMAKIAQQCNVKKDAAKMAQEQSAHLFLCLLIHDLTMRYGPVVR-SATVMGVLDA 1256 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT 609 V + + G + + + + Q N Sbjct: 1257 AFDVIVPEFGIEKRVHVDQMP-IENHTYDEQTNAL 1290 >UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F4 Length = 1349 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 140/676 (20%), Positives = 268/676 (39%), Gaps = 74/676 (10%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQM-KKVMHGDRIIAVIHSEK---- 68 L Q +G ++ + F+++ D K + + + ++GD + + ++ Sbjct: 636 LLEQGKLLKGSIQVFSRLDSFVKIGDGVKDLHVQGLESRNRALNGDIVAVQLLPDQEEKT 695 Query: 69 ERESAEPEELVEPFLTRFV-GKVQG----KNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 ++ AE +++E R V G+V+ + + P + + + Sbjct: 696 RQKKAEVVKIIEEKHPRIVPGQVKPYYGHRYGFAIMFPTDSSFPIIMLPLKNFPKDFIDR 755 Query: 124 EGD----WAVAEMRRHPLKGDRSFY---AELTQYITFGDDHFVPWWVTLARHNL-EKEAP 175 D +A++ D++ Y +L ++ + ++ + + Sbjct: 756 PLDFEKSLFLAKITNW----DQNLYYACGKLVSFLGESGSVEAETEAIIKKNLIYDTPFS 811 Query: 176 DGVATEML---------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 + +E R DL TID ++ D+DDAL K + DD ++ V Sbjct: 812 KKCLKTLPQKNTWCIPSEELNKRSDLRKECIFTIDPSTARDLDDALSCKKIADDLYEVGV 871 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ E S LDK A++RA + YL IPMLP LS+DLCSL R + Sbjct: 872 HIADVSYFVKENSALDKVAQLRATSVYLTQKVIPMLPSILSEDLCSLNPGVDRLAYSVIF 931 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN-------TGDWQPES-----EAIA 334 + +DGTI N +F I S+ KL Y Q +EN T D+ E I Sbjct: 932 NIKSDGTII-NEKFVRTVICSQVKLTYCQAQQLIENQLTDYLITNDFPKIYGGFTLENIK 990 Query: 335 EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKG-EVLDIVAEPRRIANRIVEEAM 393 + + L QI + + RHN + + P+ F L E+ + + + + +N+++EE M Sbjct: 991 DSLYTLFQISKNLRKQRHNAGAISYNLPEIIFNLNEEKDKPIGLSLYKYKDSNKLIEEFM 1050 Query: 394 IAANICAARVLRD-KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKL 452 + AN+ AR + + + H + + LA L + + L D +++ + Sbjct: 1051 LLANMSVARKIYEAHPKKAVLRRHPPPNQIMMEDLAKLFQLYELDFDLGSNQSINKSLEK 1110 Query: 453 RRELDAQPTGFLDSRI-----------RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRK 501 L+ + FL+ I F S A + + H+GL + Y +TSPIR+ Sbjct: 1111 LSGLENELKTFLEPAIVLMLTKPFLLASYFCSGAVTNEQDFHHYGLNVPLYTHFTSPIRR 1170 Query: 502 YGDMINHRLLKAVIKGE----TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK 557 Y D++ HR L A + + + IT Q ++ A + + + FL Sbjct: 1171 YPDILVHRCLTAALDSKFAVNKSVEDIKRITDQCNIKKYNADKASEESSELFFCLFLMQS 1230 Query: 558 AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL-VCSQENGTVQI---- 612 + +V + RV ++ F+ + + + E ++ Sbjct: 1231 GSLQEK--GVVVAVLNN--RVDILCTRL-GFVKRVYYQDLPCKYTYELDEKMRPKLSLKW 1285 Query: 613 --KGETVYKVTDVIDV 626 + V+++ + I + Sbjct: 1286 TKDDKKVFELDEDIPI 1301 >UniRef50_Q7MQZ6 RIBONUCLEASE n=1 Tax=Wolinella succinogenes RepID=Q7MQZ6_WOLSU Length = 653 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 149/575 (25%), Positives = 242/575 (42%), Gaps = 37/575 (6%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEV--DAQKSYFIPPPQMKKVMHGDR 59 ++ L +++ GV+ + +G GFLE + K I +K GD Sbjct: 28 LREKGALQAKGERIFLDLAFRVGVLDISREGVGFLESFGSSGKDLLIQKSDLKGAFKGDV 87 Query: 60 IIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 ++A + R SA+ E++E V + R+ + L +P A+ Sbjct: 88 VLARRVYSHKGGRPSAKVVEVLEKKNAILVAYLDQHAGRIEALDIKNGLS--LPLNASAK 145 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 ++R + + + D V ++LA N + P Sbjct: 146 SLKALPPQTVIRLDVR----------EGRIIEVLGVLSDPRVDEKISLALFNKSEPFPRE 195 Query: 178 VATEMLDEG--------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 + G R+D +L F TID +D DDA++ A L VAIA Sbjct: 196 CEEQAESFGRKVEASMYPARQDFRSLPFCTIDPIDAKDHDDAVYFDAKES---ILYVAIA 252 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D + ++ S +DK A++R FT YLP +IPMLPR LS+++CSL+ E R ++ L Sbjct: 253 DVSEYVTPHSPIDKEARVRGFTIYLPHKSIPMLPRNLSENICSLKPQEDRLAYVWKIRLH 312 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGE 349 + E A I SK KL Y++V ++LE + + E + L ++ Sbjct: 313 KRTALPLKAELHEAIIRSKQKLSYEEVDEFLEEPKANSTILKELQEPLLNLYARTKKLRA 372 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 R F + + R ++ E ++ IV+E ++ ++EE M+ ANI +A+ L Sbjct: 373 KRLERGYEFFN-EENRLLMDENLNLISIVSEKETPSHSLIEECMLLANIYSAKHLEK--- 428 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 GI+ VH + L L++ GL +E L + +D I Sbjct: 429 -GIFRVHEEPKLEKIEELLWDLRSLGLEAKPKETLHATIATIQKEAEAKGIRTEVDRMII 487 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-----ATRPQ 524 R Q+ A S + HFGLG E Y+ +TSPIR+Y D++ HRLLKA +KGE Sbjct: 488 RSQAQARYSHQKIGHFGLGFEEYSHFTSPIRRYSDLVLHRLLKAELKGEKRKMEFYLDAL 547 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 + ++ R + E D D YAR ++ G Sbjct: 548 APLCDSLSALERESARVEMDYKDRKYARLALERLG 582 >UniRef50_B9KCI4 Ribonuclease R n=9 Tax=Epsilonproteobacteria RepID=B9KCI4_CAMLR Length = 646 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 155/657 (23%), Positives = 273/657 (41%), Gaps = 76/657 (11%) Query: 6 PLLAQLKQQLHSQTPRAEGVVKATEKGFGFLE---VDAQKSYFIPPPQMKKVMHGDRIIA 62 ++ K + + + G + + G GFLE ++ I +K + D ++A Sbjct: 32 DIIKFYKNKYYLKDGFTFGKIDISANGTGFLESFDPAFKRDLLIENKNLKGANYADIVVA 91 Query: 63 VIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHE 121 + +K+R SA+ +++ + V + GL Sbjct: 92 KLLPLKKKRPSAKVILILKRAHET---SLVITKKYGEAV---------LGVNIQTGLTCA 139 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 K ++ + + + +T+ I DD FV ++LA +N E Sbjct: 140 LKASQKSLKTLPLGTILKIENHDNNITEVIGHIDDDFVDEKISLALYNKNSIFDTLCENE 199 Query: 182 MLDEGL--------VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 G R+DL L+F TID +D DDA+F ++ + VAIAD +A Sbjct: 200 AKAYGDKVDVSMYPSRKDLRNLNFCTIDPIDAKDFDDAIFYDK---NEHVIYVAIADVSA 256 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ S +DK A+ R F+ Y P IPMLPR LS+++CSL+ NE R +++L + Sbjct: 257 YVHAYSAIDKEARSRGFSIYFPHIAIPMLPRALSENICSLKPNEDRLAFCFKISLDQNNE 316 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 + E F A I SK + YD+V ++L+ D + L ++ + R Sbjct: 317 VIKE-ELFEAIINSKRRFNYDEVDEYLQTQEDLGA--------INWLYEVFKITQNLRKK 367 Query: 354 H--ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 + R L E +++ E ++ ++E+ M+ AN AA+++ G Sbjct: 368 RLKNACEFKTQELRMTLDENNKLIKTRLENDTASHNLIEDCMLLANKAAAKLI----DIG 423 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLT--LDGFCKLRRELDAQPTGFLDSRIR 469 ++ H+ D D L A L T + ++ + + L EL+ + +D I Sbjct: 424 VFRNHLSPDYKKIDQLLADLSTLSIDINPKNNVIELFKDIQVLANELNIREE--VDKLII 481 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI-- 527 + Q AE S+E HFGLG + Y +TSPIR+Y D+I HRLLKA I + + Sbjct: 482 KAQKKAEYSSENAGHFGLGFDKYTHFTSPIRRYSDLILHRLLKAKINHDEKMFNYLLLNI 541 Query: 528 ---TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 +++ R + D +AR+ K+ G RF A +++ ++ ++V+L D+ Sbjct: 542 QSTCEELSLLEREADKVSWNFMDRKFARWAKENIGK--RFKAIVIE-NQSSLQVKLDDDI 598 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 A I I G + + ++V I EV + + I + Sbjct: 599 KGALI---------------------NIIGSRA-NLLENVEVEITEVDIVSAKIFGK 633 >UniRef50_Q54BH9 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54BH9_DICDI Length = 1006 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 129/668 (19%), Positives = 240/668 (35%), Gaps = 93/668 (13%) Query: 41 QKSYFIPP-PQMKKVMHGDRIIAVIHSE-------------------------------K 68 +K I + + + GD + + + K Sbjct: 271 EKEILIQGIENINRAVDGDIVAVELFDQSKWNTPSTLIMLENEGVEEDDDSIAKDSLISK 330 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKND-------------RLAIVPDHPLLKDAIPCRAA 115 ++ + + +++ + G V+ K D L +P IP Sbjct: 331 KQPTGKVVGIIKRNWKPYCGAVEFKQDDNNTTTKTSTGLHFLYFMPIDKR----IPKIRI 386 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-- 173 + G V + + K + + + D V L + ++ Sbjct: 387 KSRQVSNLIGKRIVVAIDQW-DKNSKYPSGHFVKDLGPLGDKETESQVLLLQFDIPHHPF 445 Query: 174 ---------APDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 +PD + + + R+DL ++D D+DDAL K L +++ Sbjct: 446 GAAVMKCLPSPDIMDRVTSADMVGRKDLRKECIFSVDPPGCTDIDDALHIKDLGKGIMEV 505 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD + ++ EG+ +D+ A R+ + YL I MLP ELS +LCSL +N R +C Sbjct: 506 GVHIADVSHFVQEGTAIDEEAANRSTSVYLVDRRIDMLPGELSGNLCSLMSNVDRFAFSC 565 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 ++ +E+ + I S A L Y+Q +++ +++ I +R L + Sbjct: 566 IWKINQHTGEIIAVEYTKSIIRSCASLTYEQAQIRIDDKS----QNDQITVNLRNLNSLA 621 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGE-KGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 + + R + ++ P +F E G+ D+ R N ++EE M+ ANI A+ Sbjct: 622 KILRKQRFDRGALYLASPQVKFKTEELGGDPSDVEIYQLRETNSMIEEFMLLANIWVAKK 681 Query: 404 LRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPT 461 + + H + A D L L++ G L D + D+ Sbjct: 682 IYKHFPGCAMLRRHPTPNKAAFDLLTKLIENKGYKFSTTTSKDLADSLDSAVDKNDSYFN 741 Query: 462 GFLDSRIRRFQSFAEIST------EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 R S A+ + E H+GL + Y +TSPIR+Y D+I HRLL + I Sbjct: 742 TLCRIMTTRCMSPAKYFSSGSLPYEDFNHYGLATDIYTHFTSPIRRYPDIIVHRLLASAI 801 Query: 516 KGETATRPQD-----EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 ++ + + +T R ++ + A R F K + + A I+ Sbjct: 802 GIQSVSLNLENKTISALTENNNFRHKMAQYASRGSTQLHTLIFFKGRKSVE---DAYIIR 858 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRDE----------LVCSQENGTVQIKGETVYKV 620 + V + G + ++ + E+ T+ G ++V Sbjct: 859 VKANAFVVLVPRYGFEGTVYVSDPNSSTATTNGGGGTSNIYNYNHEDQTLG-NGIHTFRV 917 Query: 621 TDVIDVTI 628 D + V I Sbjct: 918 FDKVTVEI 925 >UniRef50_UPI0001C32480 Exoribonuclease II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32480 Length = 601 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 143/584 (24%), Positives = 219/584 (37%), Gaps = 42/584 (7%) Query: 83 LTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRS 142 T V ++ + L P I R R GD + R +G Sbjct: 35 RTDVVAVLEKRGRHLVGEPYFQRGPRLIVDRDRR-----ASLGDLV---LLRAGQRGKG- 85 Query: 143 FYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD----EGLVREDLTALDFV 198 +A++ + I D + L + V + + R DL L Sbjct: 86 -HAKVVRRIGRPDVARDVIEALMLDRGLRRRFDPAVERAAREPRAVDVPGRRDLRDLTTF 144 Query: 199 TIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFN 258 TID A+ +D DDA+ A+ D+ ++ V IAD +A++ G +D+ A R + Y+P Sbjct: 145 TIDPATAKDFDDAISAEQTGPDRWRIWVHIADVSAYVRPGDLIDREAYRRGTSVYVPAKV 204 Query: 259 IPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSD 318 PMLP LS+ CSLR E R + + L G F+ +TI S +L YD+V Sbjct: 205 EPMLPEGLSNVACSLRPGEDRLAVTAELEL--HGPSVARASFYRSTIRSDERLDYDRVDR 262 Query: 319 WLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIV 378 +P E A+ + R + + + F +G V Sbjct: 263 IFAGA---EPALEPWAQPLAAARGAAAALAARRDAQGALAIESVEPEFAFDREGHVTAAA 319 Query: 379 AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV 438 + ++R++E MI AN AR+L ++ +Y VH D + A+ L A L + G+ Sbjct: 320 GVVQTESHRLIEHLMILANEQVARLLSERKVPTLYRVHERPDGSAAERLIAQLASLGVPT 379 Query: 439 DA-EEVLTLDGFCKLRRELDAQPTGF----------LDSRIRRFQSFAEISTEPGPHFGL 487 E T + + L+S + R A H GL Sbjct: 380 PPLPEQPTPQQGAEAIAVASHLVAAYVRRSRRGGIGLNSLVLRALKQARYDPRNLGHTGL 439 Query: 488 GLEAYATWTSPIRKYGDMINHR-LLKAVIKGETATR--PQDEITVQMAERRRLNRMAERD 544 GL Y +TSPIR+Y D++ HR LL AV GE A + + R R ER Sbjct: 440 GLTHYCHFTSPIRRYPDLVCHRALLSAVGAGEDAPQASRLPGAGDWASARERDAMQVERA 499 Query: 545 VGDWLYARFLKD---KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 D L+ + G D F E+ + G V D G +P LH EL Sbjct: 500 ADDVARCFLLERTLFETGFDQDFDGEVTGVIGAGAFVAFGD-GYEGMLPVRKLHGEWWEL 558 Query: 602 VCSQENGTV--QIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 E GT+ + ++ D + V + V + PV Sbjct: 559 ---NEEGTILNGTRTGKAIRIGDAVRVQVDRVDAPRGRVDLFPV 599 >UniRef50_P37202 Exosome complex exonuclease dis3 n=4 Tax=Ascomycota RepID=DIS3_SCHPO Length = 970 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 128/643 (19%), Positives = 231/643 (35%), Gaps = 56/643 (8%) Query: 37 EVDAQKSYFIP-PPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVG-----KV 90 D + + + D + +I +A+ +++ +VG + Sbjct: 326 IADDDEDVVVSTAAEPDSARIND--LELITKRNAHPTAKVVGILKRNWRPYVGHVDNATI 383 Query: 91 QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQY 150 + +P R G V + R + Sbjct: 384 AQSKGGSQQTVLLTPMDRRVPKIRFRTRQAPRLVGRRIVVAIDLW-DASSRYPEGHFVRD 442 Query: 151 ITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLDEG--------------LVREDLTAL 195 + + L ++++ P V + +EG R+D Sbjct: 443 LGEMETKEAETEALLLEYDVQHRPFPKAVLDCLPEEGHNWKVPADKTHPLWKNRKDFRDK 502 Query: 196 DFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLP 255 +ID +D+DDAL A LP+ ++ V IAD T ++ + +D A R T YL Sbjct: 503 LICSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLV 562 Query: 256 GFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQ 315 I MLP L DLCSLR R +C + + I + F + I SK Y Sbjct: 563 DKRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANII-KVHFTKSVIASKEAFSYAD 621 Query: 316 VSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEV 374 +++ Q + + + +R+L ++ + + R + + P+ R E + Sbjct: 622 AQARIDD----QKMQDPLTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDNETSDP 677 Query: 375 LDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLK- 432 +D+ + N +VEE M+ ANI A+ + D + H N D+L +L+ Sbjct: 678 MDVEIKQLLETNSLVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNFDSLQDILRV 737 Query: 433 THGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHF 485 G+H+ + +L + + L R AE + H+ Sbjct: 738 CKGMHLKCDTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCSGTFAPPDFRHY 797 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD------EITVQMAERRRLNR 539 GL Y +TSPIR+Y D++ HR L A I ET EI + R R+ + Sbjct: 798 GLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETINPSLSDKSRLIEICNGINYRHRMAQ 857 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 MA R ++ + LK + A ++ + + G V + G + L +V + Sbjct: 858 MAGRASIEYYVGQALKGGVAEE---DAYVIKVFKNGFVVFIARFGLEGIVYTKSLSSVLE 914 Query: 600 ---ELVCSQENGTVQIKGE-----TVYKVTDVIDVTIAEVRME 634 E V + ++I+ + ++ + V + VR E Sbjct: 915 PNVEYVEDEYKLNIEIRDQPKPQTVQIQMFQQVRVRVTTVRDE 957 >UniRef50_Q0CT74 Mitotic control protein dis3 n=35 Tax=Saccharomyceta RepID=Q0CT74_ASPTN Length = 1034 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 128/654 (19%), Positives = 236/654 (36%), Gaps = 93/654 (14%) Query: 66 SEKERESAEPEELVEPFLTRFVGKVQ-----------GKNDRLAIVPDHPLLKDAIPCRA 114 K + +A+ +V+ ++VG V + + ++P + I R Sbjct: 376 EGKPQPTAKVVGVVKRNWRQYVGHVDSGSTGAQGTSGRRQQTVFVLPMDKRVP-KIRVRT 434 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE- 173 + + G + + + R + + + L ++++ + Sbjct: 435 RQAADLL---GQRILVTIDAW-DRDSRYPTGHFIRSLGELETKGAETEALLLEYDVQYKP 490 Query: 174 APDGVATEMLDEG--------------LVREDLTALDFVTIDSASTEDMDDALFAKALPD 219 P V + EG R DL L +ID +D+DDAL A+ LP+ Sbjct: 491 FPKAVLDCLPPEGHDWRVPASKDNVGWKGRRDLRDLLICSIDPPGCQDIDDALHARPLPN 550 Query: 220 DKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279 ++ V IAD + ++ + +D A +R T YL I MLP L DLCSL+ R Sbjct: 551 GNFEVGVHIADVSHFVKPNNAMDLEASLRGTTVYLVDKRIDMLPHLLGTDLCSLKPYVER 610 Query: 280 PVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL 339 + ++ + + + +F + I S+ Y+Q +++ + + + E +R Sbjct: 611 YAFSVLWEMTPNAEVV-SADFTKSVIRSREAFSYEQAQKRIDDPS----QKDELTESMRT 665 Query: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEK--GEVL-DIVAEPRRIANRIVEEAMIAA 396 L + + + R + + P+ R G+ L D+ + N +VEE M+ A Sbjct: 666 LLRFSKILRQKRMDAGALNLASPEVRIEADNDEVGDPLTDVKTKAMLETNSLVEEFMLHA 725 Query: 397 NICAARVLRDKLG-FGIYNVHMGFDPANADAL-AALLKTHGLHVDAEEVLTL-DGFCKLR 453 NI A + + H P N + L L K + +D L D + Sbjct: 726 NITVASKIYSTFSQTALLRRHATPPPQNFEELTNQLSKKRNMRLDVSSSGALADSLDRCV 785 Query: 454 RELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMIN 507 E + + R + AE H+GL Y +TSPIR+Y D++ Sbjct: 786 DEANPFFNTLVRILATRCMTSAEYFCAGAHGESEFRHYGLASPIYTHFTSPIRRYADLLV 845 Query: 508 HRLLKAVI--KGETATRP---------QDEITVQMAERRRLNRMAERDVGDWLYARFLKD 556 HR L + I +GE P ++I + R R + A R ++ + LK Sbjct: 846 HRQLASAIGYEGEDGRAPVEGVMTRNRLEDICRNINYRHRNAQFAGRASIEYYVGQALKA 905 Query: 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV------------------- 597 + G I G +R+ +NG + F+P + V Sbjct: 906 R-GEKVSADGVDGGIEEEGYVMRVFENGVVVFVPRFGIEGVVRLEDFVLPGDSALKSVEE 964 Query: 598 --------RDELVCSQENGTVQIKGET------VYKVTDVIDVTIAEVRMETRS 637 + + V KG+T ++ + V ++ V+ E+ Sbjct: 965 RRELVIRRESDFDNEEYTLHVSDKGQTDKSRGLTVELFQKVKVNVSSVKEESGR 1018 >UniRef50_A6Q7D2 Ribonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q7D2_SULNB Length = 655 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 157/647 (24%), Positives = 267/647 (41%), Gaps = 72/647 (11%) Query: 21 RAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMHGDRIIA-VIHSEKERESAEPEE 77 G + + G G++E QK + P + +GD ++ I + + R S + Sbjct: 47 YRAGELYIGKDGRGYVESQFKEQKDLLVEPDHLGDAKNGDTVVVKRIIARRGRASGKVVM 106 Query: 78 LVEPFLTRFVGKVQGKNDRLAIV-------PDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 ++ + +V P H +++ G + D Sbjct: 107 VITKAHLFTIAYTHRDEAGNFMVLNIKTGEPTHAVMEGMDLKAFKLGTVMKVDADD---- 162 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML------- 183 ++ Q DD V ++LA +N E P E L Sbjct: 163 --------------DKVLQVFGHLDDPRVDEKISLALYNRHDEFPPQCVEEALQIESEVT 208 Query: 184 -DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 +E R DLT LDF TID + +D DDA++ + L VAIAD + ++ +++D Sbjct: 209 KEEHTDRIDLTHLDFCTIDPVTAKDFDDAVYFDL---ETYTLYVAIADVSHYVPYFTEID 265 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 K AK R FT YLP + PMLPRELS+++CSL+ R ++TL + EFF Sbjct: 266 KEAKKRGFTTYLPHKSFPMLPRELSENICSLKPKVDRLAFVAKITLDQNSLKPLKEEFFE 325 Query: 303 ATIESKAKLVYDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 A I S+ + Y+ V ++ G + + + I + L +I QR + R H F+ Sbjct: 326 AIIHSRHRFNYEPVDRIIDTNGKEATGKVKEILHYLLPLYRITQRLRKERLKHGFDFR-S 384 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP 421 + + L E+ ++ E ++ ++EE M+ AN +A+ + G I+ +H Sbjct: 385 EEIKLTLNEEQLLVSTQIETGTPSHSLIEECMLLANQASAKRFK-GDGDSIFRIHELPQL 443 Query: 422 ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEP 481 +AL L GL+V+ E + + +D+ I + A S+ Sbjct: 444 QKIEALLTELAAIGLYVEEYEDSPSLIRAIQKEAGKMGLSAEVDAMIIKSLRQASYSSHN 503 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-----ETATRPQDEITVQMAERRR 536 HFGLG Y+ +TSPIR+Y D+I HRL+K + E R + + V++++ R Sbjct: 504 VGHFGLGFSHYSHFTSPIRRYADLILHRLIKTQLTNNEEEAEYLLRNIEPLCVRVSDLER 563 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHA 596 AE D D +AR+ K + G F AE+++ + Sbjct: 564 EATKAEWDFRDRKFARWAKTQIG--AFFEAEVIEAG----------------------ES 599 Query: 597 VRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L + V ++G+ + + D I + I EV + I+A V Sbjct: 600 AKARLFGDIQGVIVHLRGDNIM-LFDKIRIMITEVNIPQAIIMAELV 645 >UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosaccharomyces pombe RepID=DIS3L_SCHPO Length = 927 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 122/644 (18%), Positives = 216/644 (33%), Gaps = 70/644 (10%) Query: 49 PQMKKVM-HGDRII---AVIHSEKERESAEPEELVEPF-LTRFVGKVQ------------ 91 ++ M H +R+ R A + + +++ VG ++ Sbjct: 267 DELGGAMEHLERLEIKSVASFKGDSRTRARVVAIEKRAEISKIVGILRAPGWSLKNVEYV 326 Query: 92 -GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA-----------VAEMRRHPLKG 139 K+ +P L + + +W E+ R + Sbjct: 327 SKKSSYAIFIPKDKRLP---FITIHKNDLSDLSGENWIENILKHHDQLFSVEITRWSI-Y 382 Query: 140 DRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEML--------DEGLVRE 190 R L + + D L + + D V + +E R Sbjct: 383 SRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLPPDDWIISHEEIKKRR 442 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL +TID + D+DDA+ +AL + ++ V IAD T ++ S LDK A RA Sbjct: 443 DLRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHIADVTHFVKPDSALDKEAASRAT 502 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 T YL IPMLP L + LCSL N R + L ++G F I++ A+ Sbjct: 503 TVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEIGKRWFGKTVIKTCAR 562 Query: 311 LVYDQVSDWLENTG---------DWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 L Y + +E + + + L +I ++ + R V + Sbjct: 563 LAYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSILTLCEISRKLRKDRFAKGAVEINS 622 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFD 420 + +F L E G + AN ++EE M+ AN A + + H Sbjct: 623 TELKFQLDEYGMPNKCEVYEQTDANHLIEEFMLLANRSVAEHISKNFSNNSLLRRHASPK 682 Query: 421 PANADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI-- 477 + LK+ D + +LR + + ++ R + AE Sbjct: 683 EKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRSTFNEELVELFENMAVRSLNRAEYFC 742 Query: 478 -----STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA---TRPQDEITV 529 H+ L Y +TSPIR+Y D+I HRLL+ +K + + + Sbjct: 743 TGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSLKNTSPGIDKKNCSLVAA 802 Query: 530 QMAERRRLNRMAERDVGDW----LYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 E++ + + D A + K A IS + V + + G Sbjct: 803 HCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDKKSMPVQAFATRISGNSIDVYISEYGI 862 Query: 586 IAFIPAPFLHAVRDELVCSQENG---TVQIKGETVYKVTDVIDV 626 + ++ +V ++ T+ + +TD V Sbjct: 863 SNRVDLSSDDRIKSFIVAPDDSSVKITLFDDSQKTIALTDRFQV 906 >UniRef50_D1HK82 Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) n=11 Tax=Embryophyta RepID=D1HK82_VITVI Length = 937 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 127/602 (21%), Positives = 219/602 (36%), Gaps = 52/602 (8%) Query: 70 RESAEPEELVEPFLTRFVGKVQ---------GKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 R S +++ + G ++ G L + D + K I R L Sbjct: 338 RPSGRVVGIIKRNWHSYCGSLEPMPMPAGNGGIAHALFVSKDRRIPKIRIQTRQLGNLLD 397 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE------- 173 + + + R + I D V L +++ Sbjct: 398 K-----RIIVAVDSWDCL-SRYPSGHYVRTIGEIGDRDTESEVVLIENDINSRPFSLQVL 451 Query: 174 -----APDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 P V++E L R DL + ++D +D+DDAL LP+ ++ V I Sbjct: 452 ACLPPLPWSVSSEDL-ANPCRLDLRHVCVFSVDPPGCKDIDDALHCTTLPNGNFEVGVHI 510 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD T ++ G+ LD A R + YL I MLP+ L++D+CSLR++ R + + Sbjct: 511 ADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEM 570 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRG 348 + I + ++ + I+S A L Y + ++++ P + +R + + + Sbjct: 571 TPQAEII-STKYTKSIIKSCAALSYIEAQARMDDSRLMDP----LTMDLRNMNALAKVMR 625 Query: 349 EWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + + +F + E + LDI R AN++VEE M+AAN+ A + Sbjct: 626 LRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEKILKH 685 Query: 408 LG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 466 + H + L GL++D L D + Sbjct: 686 FPLCSLLRRHPSPTREMLEPLLRTAAAVGLNLDVSSSKALADSLDHAVGDDPYFNKLIRI 745 Query: 467 RIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-GET 519 R + A S H+GL Y +TSPIR+Y D+I HRLL A + + Sbjct: 746 LATRCMTQAVYFCSGDLSPPEFHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGLYKL 805 Query: 520 ATRPQDEI-----TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 T QD + R R +MA R + + + + A IV I Sbjct: 806 PTIFQDNAQLTSTADNLNYRHRNAQMAGRASVELHTLIYFRKRPTDT---EARIVKIRSN 862 Query: 575 GMRVRLVDNGAIAFIPA-PFLHAVRDELVCSQENGTVQIKGETV-YKVTDVIDVTIAEVR 632 G V + G + P E V ++ V+ ++ Y V + + + V Sbjct: 863 GFIVFVPKYGIEGPVYLTPRGEKGGGEWVVDEQQQKVKKMDGSISYSVLQTVMIHMEVVE 922 Query: 633 ME 634 + Sbjct: 923 PQ 924 >UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NYF6_PHYIN Length = 1079 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 137/632 (21%), Positives = 225/632 (35%), Gaps = 77/632 (12%) Query: 66 SEKERESAEPEELVEPFLTRFV--------GKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 S+ + + +++ +F G + +VP +P + Sbjct: 406 SQHAKPAGRVVGIIQRNWRKFCCSLEAPRDGVTLNASGSCLVVPVDRK----VPKIKIQT 461 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE-KEAPD 176 E + + P + + + D V L H++ + D Sbjct: 462 RQQEALMDKRVLVAIDSWPA-YSKFPLGHYVRTLGVIGDKETETTVLLLEHDIPCDQFSD 520 Query: 177 GVATEMLDEG--------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 V + E R DL L +ID + +D+DDAL AK LP+ LQ+ V I Sbjct: 521 EVMRCLPAEDWKITPENASGRRDLRDLPVCSIDPPNCKDIDDALHAKLLPNGNLQVGVHI 580 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD T ++A GS LD+ A R + YL + MLP L+ LCSL E + L Sbjct: 581 ADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDVEDHFAFSVLWEL 640 Query: 289 SADGTI---EDNIEFFAATIESKAKLVYDQVSDWLENTG-------------DWQPESEA 332 G +++F + I S A L Y Q ++L++ + ES+ Sbjct: 641 QLVGQSDVQVVDVQFCKSLIRSVASLSYQQAQEFLDDPEAGGVYGQDSTLKKKKKGESDE 700 Query: 333 IAEQ-------VRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRI 384 E+ ++ L I R R + P+ RF+L E LD+ R Sbjct: 701 QFERRQLLGSGIKTLNTIATRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRD 760 Query: 385 ANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEV 443 N +VEE M+ ANI A+ + F + H D L + K G+ + + Sbjct: 761 TNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTS 820 Query: 444 LTLDGFCKL--------RRELDAQPTGFLDSRIR----RFQSFAEI------STEPGPHF 485 L +R+ + + + +R R A + H+ Sbjct: 821 KQLQDSLDAADKEAAGSKRKHGDKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHY 880 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD------EITVQMAERRRLNR 539 GL Y +TSPIR+Y D++ HRLL A I + EI+ Q+ R + Sbjct: 881 GLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQ 940 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 +A R + + TR A I + G+ V L G I D Sbjct: 941 LAGRASVTLHTVLYFQQY---PTRTDAVITKVKNNGVGVLLPRFGIEGMIFLCGKDEQDD 997 Query: 600 ELVCSQE---NGTVQIKGETVYKVTDVIDVTI 628 + V + + ++ +V D + V + Sbjct: 998 QDVVKFDGARHTLTLVQKSRKLQVFDRVRVKV 1029 >UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7GAY1_PHATR Length = 908 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 129/576 (22%), Positives = 218/576 (37%), Gaps = 44/576 (7%) Query: 49 PQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPL--- 105 +M V D +E R + + ++ + + G + + PD + Sbjct: 340 SEMNNV--ADTFALEDDAESLRPTGKVVGIIRRNFSTYSGSIYAIKNYEREHPDGSITCV 397 Query: 106 ---LKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWW 162 + IP R + G V M P + I V Sbjct: 398 FFPVDKKIPPILIRTTQRDRLFGQRIVVAMDSWPSTSIYPL-GHYVRVIGPAGSKDVETE 456 Query: 163 VTLARHNLEKE-APDGVATEMLDEGLV--------REDLTALDFVTIDSASTEDMDDALF 213 V L H++ E P V + E R+D+ + ++ID + +D+DDAL Sbjct: 457 VLLQEHDIPHEPFPAAVLACLPPEDYRIDVDNSPGRQDIRHIPVLSIDPPNCKDIDDALH 516 Query: 214 AKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSL 273 LP+ Q+ V IAD T ++ G+ +D A R+ + YL + MLP L+ DLCSL Sbjct: 517 CTVLPNGNFQVGVHIADVTHYVQAGTAIDLEAANRSTSTYLVNKRLDMLPSLLTTDLCSL 576 Query: 274 RANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAI 333 + N R + ++ + I N+EF I S A L Y Q ++ D ++ Sbjct: 577 KGNVDRYAFSVLWEVTPEAEIL-NVEFQKTIIHSIAALTYQQAQTMIDQPDD---PNDIQ 632 Query: 334 AEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEA 392 + V+ LA + ++ + R + + P+ +F+L E D+ A AN +VEE Sbjct: 633 SNAVKRLASLARKFRKRRIDAGALTLASPEVKFVLDSESLNPTDVQAYALLEANAVVEEF 692 Query: 393 MIAANICAARVLRDKLGF-GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFC 450 M+ AN+ ++ + + H + A D+L + K+ L ++ ++ L D Sbjct: 693 MLLANVTVSKKILRHFPTLSVLRRHPAPNRAMFDSLISKAKSKDLDINIDDSKRLADSLD 752 Query: 451 KLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGD 504 E D L R S A+ H+GL Y +TSPIR+Y D Sbjct: 753 AAVVESDPYVNKLLRILSTRCMSPAQYFCSGEFRPMEWHHYGLAAPVYTHFTSPIRRYAD 812 Query: 505 MINHRLLKAVIKGETATRPQD------EITVQMAERRRLNRMAERDVGDWLYARFLKDKA 558 + HRLL A + ++ M R R ++A R F Sbjct: 813 VCVHRLLAAAVGVAPLPPHLSSKSYLHDLCANMNRRHRAAQLAGRASVQLHTLIFFAGDG 872 Query: 559 GTDTRFAAEIVDI-SRGG----MRVRLVDNGAIAFI 589 + + A I+D+ + G V + G + Sbjct: 873 AKEEQ--AYILDVETAEGVEPSFTVIVPRYGIEGRV 906 >UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NXM9_COPC7 Length = 1426 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 130/579 (22%), Positives = 221/579 (38%), Gaps = 40/579 (6%) Query: 65 HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGL---NHE 121 E ER E ++ EP G ++ D + AIP A N E Sbjct: 721 KQEAERREREGDKAEEPRR----GPIERPKIVWFKPTDKRVPLIAIPTEQAPPDFVQNSE 776 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE-KEAPDGVAT 180 VA ++RHP+ + L + + D V L N +E + V Sbjct: 777 AYADKLFVACIKRHPI-SSLHPFGTLVEELGPIGDIEVETSALLKDCNFPTEEFSENVLK 835 Query: 181 EMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 + E R+DL TID + +D+DDAL KA D + V +AD + Sbjct: 836 CLPPIPWTIPEHEFKTRKDLREERIFTIDPETAKDLDDALSVKANEDGTYDIGVHVADVS 895 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ + LD+ A+ RA + YL +PMLP LS+ LCSL E R + T++ + Sbjct: 896 FFVKPNTALDRDARKRATSVYLVQRVVPMLPPALSEQLCSLIPGEDRLAFSVIFTINKEA 955 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQP-----ESEAIAEQVRLLAQICQRR 347 + F + S AKL Y + +E P + I E +++L I ++ Sbjct: 956 KVLKKW-FGKTIVRSTAKLSYRDAQNVIEGKNFDAPVGGNYNASDIEEDIKVLDSISKKL 1014 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R N+ + + RF LGE G D + R AN ++EE M+ ANI A+ + Sbjct: 1015 RAERFNNGALTLESLKLRFTLGEDGLPTDCGEQERLDANALIEEFMLLANIAVAQQIAVH 1074 Query: 408 LG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLD 465 L + H + + G +D L F + + + Sbjct: 1075 LPEQALLRRHDSPIERRMNTFLRRAERLGYKMDISSAGALMKSFNAITDPTARKLLELVS 1134 Query: 466 SRI---RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR 522 + ++ + H+ L + Y +TSPIR+Y D++ HR L+A ++G + Sbjct: 1135 FKATHRAKYFCAGMLDIAKYGHYALNVPLYTHFTSPIRRYADVLVHRQLEATLQGGNDVK 1194 Query: 523 ------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKD---KAGTDTRFAAEIVDISR 573 ++ Q +R +AE + D + G R A+++++ Sbjct: 1195 FTMDRDAVAKVAQQCNIKRDSAILAEEQSAHLFLCVLISDLATRYGPVIR-PAKVINVLD 1253 Query: 574 GGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI 612 V + + G + + + V + T+QI Sbjct: 1254 AAFDVLIPEFGIEKRVHIDQMPI--ENHVYDEHTHTLQI 1290 >UniRef50_C1QCY4 Exoribonuclease R n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QCY4_9SPIR Length = 581 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 119/525 (22%), Positives = 212/525 (40%), Gaps = 25/525 (4%) Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLV--- 188 + + K D + + + + +N++++ + + Sbjct: 66 INKLEGKEDVPKTVKSVRVNIDVKNAKEDSKIIAKAYNIKQDFSEELIKYAEKINDTSDF 125 Query: 189 ------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 R DL L +TIDS S++D+DDAL + DD ++ + I+D + +I S LD Sbjct: 126 NNIEEGRIDLRNLKTITIDSESSKDLDDALSIEKEDDDHYKVYIHISDVSHFIELNSPLD 185 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A+ R + YL M P LS+++ SL N R + + ++ G + + E F Sbjct: 186 IEARSRGNSTYLIDEVYNMFPEILSNNVISLNENADRFAMTLLVHINNKGEVLSS-EVFK 244 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I S KL YD D ++ + + + ++ + R V D Sbjct: 245 SVINSDKKLSYDYAEDIIDKKCQAEDWLIVLIDNALIIKNLL---YNRRKEGRGVEFDNQ 301 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + + +L + G ++ AE ++ + IVEE M+ AN A+ L G IY H D Sbjct: 302 NVQIVLDDDGIPIEFYAEEKKQSMSIVEELMLLANSEIAKKLSKYDGV-IYRYHGVPDEY 360 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPG 482 + L G + + D + R Q L + R + + S Sbjct: 361 RFNNFKILAHNKGYDLKELPDKSYDIKEFVDRVKGKQEENLLIPVLLRSMTPSSYSIVNK 420 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEITV----QMAERRR 536 HFGLGL+ Y +TSPIR+Y D++ HR++K I E + ++ + Sbjct: 421 SHFGLGLDYYTYFTSPIRRYADLLIHRIVKDTILSGNEVIEESLKNVCKDSIDSLSLLDK 480 Query: 537 LNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHA 596 ++ AER AR++KD+ G + + I IS G+ V + FI + ++ + Sbjct: 481 TSKKAERYTRQIKAARYMKDRLGDE--YYGVISSISPKGIYVEIEGLDIEGFIESIYIGS 538 Query: 597 VRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 Q+ +V I Y++ D + V A+ +E I Sbjct: 539 N---YRFYQDMQSVYIDKIKAYELGDRVKVLAAKSNVENGKIFFS 580 >UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5A6_SCHJY Length = 859 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 124/666 (18%), Positives = 227/666 (34%), Gaps = 98/666 (14%) Query: 18 QTPRAEGVVKA----TEKGFGFLEVDA-QKSYFIPPP-QMKKVMHGDRIIAVIHSEK--- 68 + +G ++ F+ V+ ++I + + D +I ++ Sbjct: 123 KGTLLKGTLRILDSFHS---AFVTVEGYADDFYIDGMIARNRALDNDTVIIETLKDRAPA 179 Query: 69 ----------------------------ERESAEPEELVEP-FLTRFVGKVQ-------- 91 +A+ + E VG + Sbjct: 180 SESVTVQGSSSSEDDLTADPALPTSVASSNPNAKVVAIAERWPRDSVVGILHPPGWSPNT 239 Query: 92 -----GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK--------EGDWAVAEMRRHPLK 138 K++ P + + + G EG + + Sbjct: 240 GSPRNSKSNYCIFQPQSKRMPFHLIHKNDLGELSGSNWREQITQNEGVIFSVKRKTW-SA 298 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNL-EKEAPDGVATEML--------DEGLVR 189 R A++ + I + L + +E PD V + +E R Sbjct: 299 TSRYPLAKVDKRIGHLSNIEASTQAILLERMVNSREFPDEVLDCLPSDNWCITDEERAKR 358 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 +TID + D+DDA+ D ++ V IAD + ++ + LD A+ RA Sbjct: 359 RSFLDQIVLTIDPETARDLDDAVSCIDNGDGTYRISVHIADVSHFVKPETALDNEARSRA 418 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 T YL IPMLP L + LCSL + R + + +G F + I++ Sbjct: 419 TTVYLVQRAIPMLPTLLCERLCSLNPSVERLAFSVEWLVDRNGRELGPRWFGKSLIKTCC 478 Query: 310 KLVYDQVSDWLENTGDWQPESEAIAE---------QVRLLAQICQRRGEWRHNHALVFKD 360 +L Y + + LE + + I++ +R L I + + R ++ V + Sbjct: 479 RLTYTEAQNILEGKSWEEGVGKPISDGFKATDVEVSIRNLNIIAKALRKARFDNGAVSVN 538 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGF 419 + +F L E+G + ANR++EE M+ AN A + + + H Sbjct: 539 TSELKFRLDEQGLPQKCEVYEHKDANRLIEEFMLFANRSVAEKISNHFPHVALLRRHAPP 598 Query: 420 DPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI- 477 L G D D +LR + + T +++ R AE Sbjct: 599 KEKQLGEFIRFLAHLGFDFDGSTSARFNDSLQRLREKFPSDITELIENMAARSLQRAEYF 658 Query: 478 ------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA---TRPQDEIT 528 S H+ L Y +TSPIR+Y D+I HRLL+ ++ + T+ +EI Sbjct: 659 CTGSTDSVSEWLHYALAFSHYTHFTSPIRRYPDIIVHRLLECAVQDCDSSLKTKQCNEIA 718 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 ++ R+A+ D + +L +K + + A V + R++D+ Sbjct: 719 THCNTKKENARLAQEDSNFVFLSVYL-NKYSEEHKVPAMPVRV----FVTRILDHSIDVH 773 Query: 589 IPAPFL 594 IP L Sbjct: 774 IPVFAL 779 >UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9HELI Length = 716 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 136/603 (22%), Positives = 251/603 (41%), Gaps = 47/603 (7%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLE--VDAQKSYFIPPPQMKKVMHGDRIIA---VIHS 66 K + + G V+ T+ G+GF+ + K + + +K GD ++A + H Sbjct: 39 KNKYYLLEKFRIGKVELTKAGYGFVRAFDNTGKDWLVEKNLLKGAQKGDIVLAKSLIKHQ 98 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + A+ +++ ++ + ++ D I + ++ Sbjct: 99 HSAKIKAKVLAVLQEKVSSVICYLEKYK------------LDCIAVSIPNEVVYKINASQ 146 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP-------DGVA 179 ++ + + E+ + + +D + ++L ++ + Sbjct: 147 KSLKTLPSKTILKINPRNGEILEILGTLEDPKIDEIISLNLYDKHESFSLQAEIQAQSFK 206 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + + R +LT L F ID S +D DDA+F ++ L VAIAD + ++ S Sbjct: 207 EVKIKDFKERINLTNLPFCAIDPVSAKDHDDAVF---YDEESSILYVAIADVSHYVTPNS 263 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD AK R F+ Y P +IPMLPR LS++LCSL+ + R + ++ L + E Sbjct: 264 PLDIEAKSRGFSIYFPHKSIPMLPRILSENLCSLQEGKTRLAMVWKIRLHKRTKAVLSSE 323 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 FAA I+ + KL YD+V D L T + + + + L ++ Q+ + R F Sbjct: 324 LFAAVIKVRQKLTYDEV-DILFETQKSKTIKKPLHSMLFALQELTQKLRKKRLQKGFDFL 382 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR-------DKLGFGI 412 + L + E+ + +P+ +++++EE M+ ANI +A++L + L GI Sbjct: 383 -GDEVELELDKNLELKSLHFQPQSSSHQLIEECMLLANIQSAKLLEQKNSKNDENLKLGI 441 Query: 413 YNVHMGFDPANADALAALLKTHGLH-----VDAEEVLTLDGFCKLRRELDAQPTGFLDSR 467 Y VH L L+ G+ +E L A+ +D Sbjct: 442 YRVHQKPKQEKLSELFGELRMLGIWRGKAIPKTQESLHKAIIEIQNNAKKAKMQREVDKL 501 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE- 526 I + A ++ HFGLG EAY+ +TSPIR+Y D+I HR+LK+ I + ++ Sbjct: 502 IIKSMQQANYASHNLGHFGLGFEAYSHFTSPIRRYSDLILHRILKSKITLQEDIDYKESL 561 Query: 527 --ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 + + + R E D D +AR+L G + I++ + + L D Sbjct: 562 PMLCDNLNTQEREIMQIEWDFQDRKFARYLSKHLG--QTYQGIIIN-ESHPILISLTDYP 618 Query: 585 AIA 587 + Sbjct: 619 LMG 621 >UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5N0_SCHJY Length = 969 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 125/610 (20%), Positives = 226/610 (37%), Gaps = 59/610 (9%) Query: 71 ESAEPEELVEPFLTRFVGKVQG---------KNDRLAIVPDHPLLKDAIPCRAARGLNHE 121 +A +++ +VG V + + P +P R Sbjct: 360 PTARVVGILKRNWRPYVGHVDMASVANRTGSSQQSVLLTPMDRR----VPKIRFRTRQIS 415 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVAT 180 G V + + R + + + L ++++ P V Sbjct: 416 RLLGQRIVVSVDNWDI-DSRYPEGHFVRALGEMETKEAETEALLLEYDVQYRPFPKSVLD 474 Query: 181 EMLDEGL--------------VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 + EG R D L +ID +D+DDAL A+ LP+ ++ V Sbjct: 475 CLPAEGHEWRVPQDKSDPLWHKRADFRELLVCSIDPPGCQDIDDALHARPLPNGNYEVGV 534 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD T ++ + +D A R T YL I MLP L DLCSLR R +C Sbjct: 535 HIADVTHFVKPSTAMDAEASSRGTTVYLVDKRIDMLPMLLGTDLCSLRPRIERFAFSCIW 594 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 + + + N+ F + I SK Y + +++ P + E +R+L ++ ++ Sbjct: 595 EMDENANVV-NVSFTKSVISSKEAFSYAEAQARIDDKKAQDP----LTEGMRILLRLSKK 649 Query: 347 RGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + R ++ + P+ + + E + +DI + N +VEE M+ ANI A+ + Sbjct: 650 LKQRRLDNGALNLASPEVKVQMDNETSDPMDIEIKQLLETNSLVEEFMLLANISVAQKIY 709 Query: 406 DKLG-FGIYNVHMGFDPANADALAALLK-THGLHVDAEEVLTLD-GFCKLRRELDAQPTG 462 + + H +N +AL +L + + + L + D Sbjct: 710 ETFPQTAVLRRHAAPPASNFEALQDILHVCKDMQLKCDSSKALAHSLDECSDNADPYFNT 769 Query: 463 FLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516 L R AE + H+GL Y +TSPIR+Y D++ HR L A I Sbjct: 770 LLRILTTRCMLSAEYFCSGTFAYPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAASID 829 Query: 517 GETATRPQD------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 ET +I + R R+ +MA R ++ + LK G +TR A ++ Sbjct: 830 YETLHPSLQNKQKLVDICNGINYRHRMAQMAGRASVEYYVGQALK---GRETREEAHVIK 886 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE----NGTVQIKGETVYKV--TDVI 624 + + G V + G + L + + N +++ + ++ + Sbjct: 887 VFKNGFVVFIAKFGLEGIVYTRTLSTPEPVVEFDEAQYALNVSIKAPKQHKIRIQMFQKV 946 Query: 625 DVTIAEVRME 634 V++ +R E Sbjct: 947 LVSVGAIRDE 956 >UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis RepID=A2FUQ4_TRIVA Length = 863 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 135/651 (20%), Positives = 233/651 (35%), Gaps = 52/651 (7%) Query: 13 QQLHSQTPRAEGVVKATEKGF--GFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE--- 67 Q+L+ + G A ++ G L D + + + + GD+I + + E Sbjct: 210 QKLYKEGKVTIGYFSAMQRQHDQGELRNDKETILLNDAKSVNRALDGDKIAVITNPESQW 269 Query: 68 -KERESAEPEELVEPFLTRFVGKV----QGKNDR--LAIVPDHPLLKDAIPCRAARGLNH 120 + + ++ G V ND L +VP ++ +P R Sbjct: 270 VGGYPTGKVVSILSRKSRVICGTVLPPKVQTNDWQSLLVVPQ----QENLPKIRIRSRQV 325 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA------ 174 + G + + + I + V L + + +A Sbjct: 326 QELIGMRVHVAIDSWAI-NSKYPSGHYISTIGQAGNLQAESEVILMTNEIPHDAFSDAVL 384 Query: 175 ---PDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 P +E R DL +ID D+DDAL K + ++ ++ V IAD Sbjct: 385 NCLPPKDFQPTPEEVKRRMDLRDRCVCSIDPPGCTDIDDALHYKDIDEETCEIGVHIADV 444 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ EG+ +D A+ R T YL I MLP LS+DLCS+R R + ++ Sbjct: 445 SFFVREGTAIDLEARDRGTTVYLVEKRIHMLPSLLSEDLCSIRGGIERLAFSVVAIMNKK 504 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWR 351 +++F + I+S+A L Y + + +E+ D +A+ +R L + + + R Sbjct: 505 TAETIDVKFGKSIIKSRAALSYGRAQEIVEDQNDQS----ELAKGIRGLLALSKIMNKKR 560 Query: 352 HNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 + + P F L E E L N +VEE M+ ANI A+ + + Sbjct: 561 MDDGALTLSSPQLHFTLDSETAEPLSGELYQHLEVNSLVEEFMLYANIEVAKKIYETFKQ 620 Query: 411 -GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 + H A D L LK G+ ++ + +L E + Sbjct: 621 SAMLRRHESPIAARFDFLNRALKRFGVQLNPDTNKSLVETLDGVGEKVKDLDNIVRIMTT 680 Query: 470 RFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR- 522 R FA+ S E H+GL + Y +TSPIR+Y D+I HR L A I + AT Sbjct: 681 RCMQFAKYFAAGTQSYENFRHYGLAMPIYTHFTSPIRRYADLIVHRQLAAAIGYDKATDM 740 Query: 523 -----PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 + + R ++ + A R L+ G +++ I Sbjct: 741 LASKLMMQAVAENLNFRHKMAQDAGRSSSQLFIMEMLRRTPGKIE--EGKVIKIKPTVFV 798 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 + L G + E E K + D + V + Sbjct: 799 ILLEQYGVEGHVHVD------GEKWIYNETEESLEKDGKRICIFDKVRVRV 843 >UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegleria gruberi RepID=D2UXR9_NAEGR Length = 1053 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 131/603 (21%), Positives = 245/603 (40%), Gaps = 51/603 (8%) Query: 64 IHSEKERESAEPEELVEPFLTRFVGKV-------QGKNDRLAIVPDHPLLKDAIPCRAAR 116 ++SE+ + + +++ + G + +G N L + D + K I R + Sbjct: 381 VNSERLIPTGKVVGIIKRNWRSYCGSLDEDTDSEEGLNKVLFVPVDRCIPKIRIVSRQCK 440 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAP 175 L ++ + + + I + V L H++ + Sbjct: 441 ELMNK-----RICVMIDGWSV-NSKYPDGHYISTIGEIYNTDTESEVILLEHDVPHYKFS 494 Query: 176 DGVATEMLDEG--------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + + + R DL L+ V++D D+DDAL A LPD +++ V Sbjct: 495 QSIIDCLPPKDWQPTEKDMERRRDLRHLNIVSVDPPGCTDIDDALHAIQLPDGSIEIGVH 554 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD T ++ EG+ +D A R T YL I MLP L+++LCSLR + R + Sbjct: 555 IADVTNFVKEGTAIDIEAAKRGTTVYLVDRRIEMLPSLLTNNLCSLRQHVDRLAFSVIWK 614 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 S +G I+ ++++ + I S+ + Y++ +++ + + +A +RLL QI + Sbjct: 615 FSPEGDIK-SVDYTKSLIRSRKSMTYEEAQKVIDD----KERDDELATDLRLLMQISKIL 669 Query: 348 GEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL-R 405 + R+ + P +F + E D+ R N +VEE M+ ANI A+ + + Sbjct: 670 KKKRNEAGSLTLASPAVKFSMEAESSNPTDVELYQLRETNSMVEEFMLLANIAVAKKITK 729 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLD 465 + H +P + L +LK HG+++D L+ R ++D Sbjct: 730 EFPMVACLRRHPPVNPKKFEPLLEMLKRHGINLDISSSKILNETLSNIRSSGLIKDKYMD 789 Query: 466 SRIR----RFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 + +R R A S E H+GL + Y +TSPIR+Y D+I HRLL A I Sbjct: 790 TLVRIMVTRCMEQAVYFISGDCSQEEYWHYGLAVPIYTHFTSPIRRYADVIVHRLLGAAI 849 Query: 516 KGETATRPQDE------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIV 569 T + + + +R R+++ A+R + + T R A I Sbjct: 850 GYYPLTEKVTDREYSRRLMNDLNKRNRMSQYAQRSSVELYTNVYFNSNPITSER--AYIT 907 Query: 570 DISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET----VYKVTDVID 625 + G+ V + G I + + ++E ++ + + V + ++ Sbjct: 908 QMKSNGIVVFIPRFGFEHVIFLTKDNVQYSNITFNEETDSLVFEDQNKPTITLTVFEHVN 967 Query: 626 VTI 628 + I Sbjct: 968 IRI 970 >UniRef50_A1VYZ1 RNB-like protein n=15 Tax=Campylobacter RepID=A1VYZ1_CAMJJ Length = 644 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 156/656 (23%), Positives = 268/656 (40%), Gaps = 72/656 (10%) Query: 5 NPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ---KSYFIPPPQMKKVMHGDRII 61 N ++ + K + + A GV+ + KG GFL+ + K I +K + D + Sbjct: 31 NHIIKEHKSKYYLNNGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVA 90 Query: 62 AVIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 + +K+R SA+ +++ + V + GL+ Sbjct: 91 VKLLPLKKKRPSAKVILVLKRANET---SLVITKRYGEAV---------LGMNIKTGLST 138 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 K ++ + + + + + + DD V ++LA N E D Sbjct: 139 ALKASQKSLKALPLGTILKIENENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIK 198 Query: 181 EMLDEGLV--------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 E L G R DL AL F TID +D DDA++ K ++ VAIAD + Sbjct: 199 EALANGDSVDASMYENRMDLRALPFCTIDPIHAKDFDDAIYFDI---QKREIYVAIADVS 255 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ S +DK A+ R F+ Y P IPMLPR LS+++CSL+ + R ++ L + Sbjct: 256 EYVYAYSAIDKEARNRGFSIYFPHIAIPMLPRPLSENICSLKPHLDRLAYCFKIALDHEN 315 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 + E F I SK + YD+V + L D + + L +I + + R Sbjct: 316 KVIKE-ELFEGIINSKRRFNYDEVDEILIQKPDLKE-----LSWLYELFEITKNLRKMRL 369 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 +A F+ + R L E + V E ++ ++E+ M+ AN AA+++ G+ Sbjct: 370 KNAFEFR-TEELRMNLDENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLI----DIGV 424 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLT--LDGFCKLRRELDAQPTGFLDSRIRR 470 + H+ D D L L+ G+ V+ + L + L EL+ + +D I + Sbjct: 425 FRNHLSADARKIDKLLNELRELGIDVNFKPNLPELIRDIQALSDELNLRAE--VDKLIIK 482 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-----D 525 Q AE S+ HFGLG + Y+ +TSPIR+Y D+I HRLLKA K + + Sbjct: 483 AQKKAEYSSINAGHFGLGFDKYSHFTSPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIE 542 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 ++ R D D +AR+ G +F A + + G+ Sbjct: 543 STCESLSTLEREADKVAFDFMDRKFARWAAKNIGK--KFKALV--VQNDGV--------- 589 Query: 586 IAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + DE+ + I +T + + ++V I E + I A+ Sbjct: 590 -------CIAKLDDEIKGAD-----IILYDTRVNLLESVEVQIMEADIVMAKIYAK 633 >UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clupeocephala RepID=UPI0001A2D29A Length = 829 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 125/574 (21%), Positives = 208/574 (36%), Gaps = 48/574 (8%) Query: 70 RESAEPEELVEPFLTRFVG---KVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 +++ + +VE +R V K P + A + + GD Sbjct: 200 QKNGKVVFIVEKKHSRAVSGFLKFLPNKRFAMFSPVDHRVPRVNVPLADCPADFTSRPGD 259 Query: 127 ----WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATE 181 + + + P + + L + + + L + ++ E + V Sbjct: 260 YENTLFICRITQWPADSNFA-EGRLAKTLGQAGEIEPETEGILTEYGVDFSEFTEEVLNC 318 Query: 182 MLD---------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 + E R DL TID A+ D+DDAL K L D ++ V IAD + Sbjct: 319 LPQDLPWSIPAHELSTRRDLRKECIFTIDPATARDLDDALSCKQLSDGNFEVGVHIADVS 378 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ EG+ LD+ A RA + YL IPMLPR L ++LCSL R + LS +G Sbjct: 379 YFVKEGNALDELAGQRATSVYLVQKVIPMLPRLLCEELCSLNPLTDRLTFSVIWKLSPEG 438 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA-----------EQVRLLA 341 I F I S KL YD ++ E A E V L Sbjct: 439 KILSEW-FGRTVICSCIKLSYDHAQSMIDAPDKHFSPEELPACSPNHSIIEIQEAVLNLH 497 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 I ++ R + D+ F L E R +N++VEE M+ AN+ Sbjct: 498 NIAKQLRAQRFEGGALRLDQLKLSFTLDKESSMPQGCYVYQYRDSNKLVEEFMLLANMAV 557 Query: 401 ARVL-RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL----------DGF 449 + R + H D + GL +D L D + Sbjct: 558 GHQIYRSYPELALLRRHPPPQTKMVDDMQEFFDQMGLDIDFSSSGALHRSLNENLGDDEY 617 Query: 450 CKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHR 509 R+E+ F + A + H+ L + Y +TSPIR+Y D+I HR Sbjct: 618 TAARKEVITHMCSRPMQMAVYFCAGALKDEKLFRHYALNVPLYTHFTSPIRRYADVIVHR 677 Query: 510 LLKAVIK-GETATRPQDEI---TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA 565 LL A + G + +E+ +R+ ++ + + +A F+K+ D+ Sbjct: 678 LLGASLNCGPRLSVSGEEVHQQASHCNDRKTASKRVQELSSELFFAVFVKECGPLDS--E 735 Query: 566 AEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 A ++ + V ++ G I L +++ Sbjct: 736 AMVMGVLDQSFDVLVLRYGVQKRIYCNSLEGLKE 769 >UniRef50_C3XLE6 Ribonuclease n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLE6_9HELI Length = 719 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 136/593 (22%), Positives = 253/593 (42%), Gaps = 47/593 (7%) Query: 6 PLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEV---DAQKSYFIPPPQMKKVMHGDRIIA 62 +L K + + G V+ T++G+GF+ + + + +K GD +++ Sbjct: 33 DVLEVRKNRYVLKRKFCIGKVELTKEGYGFVIPLPKGNGRDWLVEKHLLKGAQKGDIVLS 92 Query: 63 VIHSEKE--RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 + ++ R A+ E++E + + ++ D + + + Sbjct: 93 KMLNKSHNTRIYAKVIEILETKQSSVLCYLEKYK------------LDCMAISIPNEIPY 140 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP----- 175 + K ++ + + L E+ + + D + + L+ ++ ++ Sbjct: 141 KIKATQKSLKTLPPNTLLKLNPKNGEILEILGALSDPQIDETIALSLYDRQESFSLQAEL 200 Query: 176 --DGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + L + R D T L F ID +D DDA+F ++ L +AIAD + Sbjct: 201 EAESFKPVRLKDFKERADCTHLPFCAIDPVGAKDHDDAIF---YDEENSTLYIAIADVSY 257 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ + S LD AK+R F+ Y P +IPMLPR LS++LCSL A E+R + ++ L Sbjct: 258 YVKKDSALDLEAKMRGFSVYFPHKSIPMLPRTLSENLCSLSAGELRLAMVWKIRLHKCTK 317 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 N E F A I+ KL Y++V LE+ ++ + + L + Q+ + R Sbjct: 318 AVLNSELFEAIIKVSQKLTYEEVDLLLESKKSKTIKT-NLKSMLFALNDLAQKLRQKRLK 376 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA----------RV 403 + F L + E+ D+ + + +++++VEE M+ ANI +A Sbjct: 377 NGFDFL-GDKSVMELDKNLELKDLKLQSQTLSHQLVEECMLLANIQSALLQSKQSTPSTQ 435 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA----- 458 ++L GIY VH + L + G++ + F K E+ A Sbjct: 436 RDERLKLGIYRVHNAPKLESIQDLFTEFRLLGIYHKKKIPKYTKDFHKEILEIQALTKHS 495 Query: 459 QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-G 517 +D I R A ++ HFGLG E+Y+ +TSPIR+Y D++ HR+LK I+ Sbjct: 496 NMAAEVDKLIIRSMQQATYASHNIGHFGLGFESYSHFTSPIRRYSDLLLHRILKDKIQFN 555 Query: 518 ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 + +I ++++ R E D D +AR+L K G + I++ Sbjct: 556 PNSLESLPQICEDLSQKEREVAKIELDFKDRKFARYLNKKIG--QAYVGVIIN 606 >UniRef50_C5KND9 Exosome complex exonuclease rrp44, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KND9_9ALVE Length = 982 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 123/634 (19%), Positives = 219/634 (34%), Gaps = 81/634 (12%) Query: 71 ESAEPEELVEPFLTRFVGKV---------------QGKNDRLA--------IVPDHPLLK 107 + +++ + G + + + +P +P + Sbjct: 316 KEGRVVGIIKRNWREYAGTLRPIQQEEEEQPQQGDKQHGGGMIGYSKIERIFIPANPRIP 375 Query: 108 DAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLAR 167 + + M + R ++ + + V L Sbjct: 376 NIRIVTKHSNDLDNMR----ICVVMDTW-DRTSRLPQGHWSRILGRCGERDTESSVILHE 430 Query: 168 HN-LEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALP 218 HN + ++ D V + +E R DL + +ID +D+DDAL + L Sbjct: 431 HNVITRDFSDDVMRCLPPKDFQPDEEEISRRLDLRNVTVCSIDPPGCKDIDDALSCEVLD 490 Query: 219 DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEV 278 + ++ V IAD T ++ + +DK A R T YL MLP L+ DLCSL + Sbjct: 491 NGNWRIGVHIADVTHFVHPNTAIDKEAAERCTTVYLVERRTDMLPSLLTTDLCSLVGGKD 550 Query: 279 RPVLACRMTL-------SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE 331 R + + + N +F A I S A L Y + +++ D + Sbjct: 551 RLCFSVLWEFQLNKKNGNEEVLKIVNTQFHKAIINSNAALSYAEAQARIDDKND----NS 606 Query: 332 AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVE 390 + + +R L + R + + RF L E + D+ + NR+VE Sbjct: 607 DLTQSIRRLLKAAMIIRRKRMAGGALELASQEVRFELDSETSDPTDVAEYTMKDTNRLVE 666 Query: 391 EAMIAANICAAR-VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLH-----VDAEEVL 444 E M+ AN A +L+ + H +L +LL+ G+ + E Sbjct: 667 EFMLLANTSVAEQILKHFPSNSVLRRHPPPKEQQLKSLRSLLEKQGVKGFQFGSNRELSR 726 Query: 445 TLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSP 498 +L+ C ++ D + R + A+ H+GL + Y +TSP Sbjct: 727 SLNTVC--NKKDDPYFNRLVRIMTTRTMNQAQYFCTGEVENGMFSHYGLAMGLYTHFTSP 784 Query: 499 IRKYGDMINHRLLKAVIKGETATRPQD------EITVQMAERRRLNRMAERDVGDWLYAR 552 IR+Y D++ HRLL A + + E ++ R R + A R + Sbjct: 785 IRRYADILVHRLLMASLGIRPLPPQLNDKTAVIEQCDKINFRHRNAQFAGRASAELHTYL 844 Query: 553 FLKDKAGTDTRFAAEIVDI---------SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVC 603 + +K G T A I + G ++V + G + DE +C Sbjct: 845 YF-NKNGPCTA-DAVITRVRARIGGLRRGGGSLQVVVPRYGIDGVCKLDDNNKDDDEWIC 902 Query: 604 SQENGT-VQIKGETVYKVTDVIDVTIAEVRMETR 636 ++ V K + V D I V I + R Sbjct: 903 DEDKMIAVNDKSKITLAVFDHIQVKIMADNTDFR 936 >UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 Tax=Theileria RepID=Q4UH40_THEAN Length = 955 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 126/615 (20%), Positives = 229/615 (37%), Gaps = 69/615 (11%) Query: 70 RESAEPEELVEPFLTRFVGKVQGKND--------RLAIVPDHPLLKDAIPCRAARGLNHE 121 + + +V F G + RL + D + +I R ++ L Sbjct: 356 KRYCKIVSIVNRMRKEFCGSLLPIEGEVGDGYVQRLFVPVDARIPFISIETRRSKEL--- 412 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN-LEKEAP----- 175 E + V E+ + + T+ + DD V V L H + ++ Sbjct: 413 --ENNRIVVEVDSW-DRFSKRPNGHWTEILGPIDDRNVESTVILREHQVITEDFSLQSYR 469 Query: 176 ----------DGVATEMLDEGL----------VREDLTALDFVTIDSASTEDMDDALFAK 215 D +TE ++ R D ++D +D+DDAL K Sbjct: 470 HLGLITSSLVDTSSTEKDEDKSDIKITPELLGGRVDYRDEVVFSVDPPGCKDIDDALGCK 529 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 L + ++ V IAD T ++ EGS LDK A R T YL MLP+ L+ +LCSL + Sbjct: 530 RLSNGNFEVSVHIADVTYFVPEGSNLDKEASERCTTVYLVDRRTDMLPKLLTTNLCSLMS 589 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE 335 + R + + +G I +F + I+S+ L Y Q + ++++ + + ++ Sbjct: 590 DVNRLTFSVYWEMDMNGVIL-ATKFSKSVIKSRRSLTYQQAQEMIDSSSN-----DEVSV 643 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 +R L + + + R V + + +F +VL++ + N++VEE M+ Sbjct: 644 SLRNLNNLSKILRKQRIERGAVELESSEVKFEFD-MSKVLNLESYKTYETNQMVEEFMLL 702 Query: 396 ANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLH-VDAEEVLTLDGFCKL- 452 ANI A + ++ + VH + L L+ + L+ ++ Sbjct: 703 ANISVATKIFERFPKCSLLRVHPPPVEEKLNELNRTLQQQNITSFKYGNSKQLNESLEIV 762 Query: 453 RRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMI 506 + E + + T R S A + H+GL E Y +TSPIR+Y D+I Sbjct: 763 KNEKNDKFTTATKILTTRTMSQALYRNSNDLDEDEFKHYGLCCEYYTHFTSPIRRYADVI 822 Query: 507 NHRLLKAVIKGETAT----RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 HRLL + + + + +R R + R+ + K D Sbjct: 823 VHRLLASALDLAPLNVNFIQSLSGQCDLLNKRHRNAQWCSRESDKMFSYLYFKQM--GDV 880 Query: 563 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTD 622 ++DI+ + V ++ G A A + + N + V KV D Sbjct: 881 ECNGIVLDINEDRVVVLTLEYGIEAV-------ANVEYKSFDKVNKVLVDLAGNVLKVFD 933 Query: 623 VIDVTIAEVRMETRS 637 + V + R+ Sbjct: 934 QVKVRLYTCNKHFRN 948 >UniRef50_UPI000180BAF4 PREDICTED: similar to DIS3 mitotic control homolog-like 2 n=2 Tax=Ciona intestinalis RepID=UPI000180BAF4 Length = 925 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 126/671 (18%), Positives = 225/671 (33%), Gaps = 110/671 (16%) Query: 17 SQTPRAEGVVKATEKGF--GFLEVDAQKSYFIPP-PQMKKVMHGDRIIAVIHSEKE---- 69 + +G ++ K F F+ + + ++GD + I +K+ Sbjct: 158 ATGELIKGTLRVNAKKFSHAFIADKEGHDILMDGFKDRNRALNGDVVAVRIKDKKDWIIG 217 Query: 70 ------------------------------------RESAEPEELVEPFLTRFV-GKVQG 92 R++ +VE + V G ++ Sbjct: 218 VSDLAEQLGAVSVGDSKADQTSPNVSSPTVGKFNKTRKTGVVVGIVEKKSRQVVTGHLRL 277 Query: 93 KNDRLAIVPDHPLL--------KDAIPCRAARGLNHEFKEGD---WAVAEMRRHPLKGDR 141 + P+ + + + + K+ V ++ + Sbjct: 278 DKAK----PNDKFITLETVSKNNQNLQIPREEVMKEKAKQDISNVLFVGKILKWEPHSPL 333 Query: 142 SFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEMLD---------EGLVRED 191 EL Q I L H ++ E + V + E R D Sbjct: 334 PL-GELCQSIGEIGQIEPETTRILIDHEVDFSEFSNAVNQCLPSDLPWTIPQAERAKRRD 392 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 T+ +ID S D+DDAL K LP+ ++ V IAD + ++ G+ LDK A R + Sbjct: 393 FTSECIFSIDPPSARDLDDALHCKQLPNGTYEIGVHIADVSYFVHPGTALDKVASERCTS 452 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 YL IPMLPR L ++LCSL R + ++ G I F + I S AK Sbjct: 453 VYLVQRVIPMLPRLLCEELCSLNPGTERLAFSVVWNITEQGKILSQW-FGRSVIRSCAKF 511 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQ------------------VRLLAQICQRRGEWRHN 353 YD +++N + E+ ++ V L ++ Q + R + Sbjct: 512 SYDHAQSFIDNPDRDFSQPESACQENEFPEITGNFSMNEIKTKVLGLFKVSQNLRKQRID 571 Query: 354 HALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-G 411 + + D+ + L E G + +N ++EE M+ AN+ A L + Sbjct: 572 NGALRLDQVRLSYTLNSETGLPNGCYTYEYKKSNELIEEFMLLANMAVAHKLYTSIPTHA 631 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKL---RRELDAQPTGFLDSRI 468 H + GL VDA L + EL L Sbjct: 632 FLRSHSEPKEEMMQDFVSTCMALGLEVDASSSEALAESLRTAPGADELAKYRKQALFLLA 691 Query: 469 RRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 + Q A H+ L + Y +TSPIR+Y D++ HR L AVI ++ Sbjct: 692 IKPQQLATYICAGSVSDESKYHHYALNVPLYTHFTSPIRRYADLVVHRQLAAVIGEQSDE 751 Query: 522 R----PQDEITVQ---MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 + DE+ Q R+ + A+ D + + + ++R ++++ Sbjct: 752 QMMNLSTDELQAQATLCNHRKSNAKQAQELSIDLFFNLLVNNFGPLESR--GMVMNVLDR 809 Query: 575 GMRVRLVDNGA 585 + + + G Sbjct: 810 AVDILSTEYGV 820 >UniRef50_A7AWK8 RNB-like domain containing protein n=1 Tax=Babesia bovis RepID=A7AWK8_BABBO Length = 951 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 137/695 (19%), Positives = 235/695 (33%), Gaps = 89/695 (12%) Query: 13 QQLHSQTPRAEGVVKATEKGF--GFLEVDAQKSYFI-PPPQMKKVMHGDRIIAVIHSEKE 69 Q GV+ F G++ + Y + + + +HGD + I ++ Sbjct: 267 QDGIDSGRYHRGVLHMYPGSFQNGYVSC-GEDEYKVCGTYNLNRAIHGDAVCIEIVTDGM 325 Query: 70 ----------------------------------------RESAEPEELVEPFLTRFVGK 89 ++ +++ + G Sbjct: 326 DVVVPDSGDDAAVPEDIVAEDSEDIKLLDVDKTDKPLECLKKECRVVGILKRNWREYCGT 385 Query: 90 VQGKNDRLAIVPDHPLLKDAIPCRAARGL-------NHEFKEGDWAVAEMRRHPLKGDRS 142 + ++ + +V +++ AR E V + + R Sbjct: 386 LMAVDEAIDMVGHSHMVQRIFVPVDARIPYICIDTRKSSELENKRIVVVIDSW-DRFSRK 444 Query: 143 FYAELTQYITFGDDHFVPWWVTLARHN-LEKEAPDGVATEML--------DEGLVREDLT 193 + I +D V L H + +E P E+ ++ +R+D Sbjct: 445 PSGHWVEIIGDVEDLETESAVILREHEVITREFPPKAYMELPPADWKPGAEDIKLRKDFR 504 Query: 194 ALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNY 253 ++D +D+DDAL L + +++ V IAD T ++ GS +DK A R T Y Sbjct: 505 KNLVFSVDPPGCKDIDDALGFSVLDNGNIEVSVHIADVTHFVKAGSFIDKEASKRCTTVY 564 Query: 254 LPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVY 313 L MLP L+ +LCSL NE R + + I D +F+ I S Y Sbjct: 565 LVDRRTDMLPSLLTTNLCSLVPNEDRLCFSVVWQFDRNNEIVD-TQFYKGIIRSSRAFTY 623 Query: 314 DQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGE 373 D ++ G S+ I E ++ L I + R V + P+ +F E + Sbjct: 624 KDAQDLIDAGG-----SDNITEALKGLDNIAKILRAKRFESGAVELESPEVKFEY-ELTD 677 Query: 374 VLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-GIYNVHMGFDPANADALAALLK 432 V + NR+VEE M+ AN+ A + ++ + H L L Sbjct: 678 VRKMQKYVLYDTNRMVEEFMLLANVSVATKIFERFPTSALLRRHPPPVDERLKVLQRSLS 737 Query: 433 THGLHVDAEEVLTLD-GFCKLRRELDAQPTGFLDSRIRRFQSFAEIS------TEPGPHF 485 HG+ + L+ +L + D + L R S A H+ Sbjct: 738 QHGIEFEFGNSRDLNLSLKRLVQSGDPRLGSALRIMTTRCMSQAVYCHSGEAGVTSFKHY 797 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-ATRPQDEITVQM---AERRRLNRMA 541 GL E Y +TSPIR+Y D+I HR+L A + E T E++ Q +R R Sbjct: 798 GLSSELYTHFTSPIRRYADVIVHRMLAAALDIEAMDTSFYQELSSQCEVLNKRHRNATWC 857 Query: 542 ERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 R+ FLK K + A ++ S + V + G A A D Sbjct: 858 GRESSRLFAYLFLKQK--GEVTATATVIGTSEKRICVIAHELGIEA-------TARVDIS 908 Query: 602 VCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 + + + D + V ++ R Sbjct: 909 EFDAQTQRATLACGKHVNLFDHVTVKLSAENKHYR 943 >UniRef50_B0D4A4 Predicted protein n=9 Tax=Dikarya RepID=B0D4A4_LACBS Length = 1000 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 122/622 (19%), Positives = 228/622 (36%), Gaps = 62/622 (9%) Query: 65 HSEKERESAEPEELVEPFLTRFVGKVQGKN-----------DRLAIVPDHPLLKDAIPCR 113 S +++ + +++ +V + + + P LL Sbjct: 370 RSSEKQPTGRIVGVIKRNWRAYVCHIDSTSLTSSNATSLSLQTVFATPVSRLLPRI---- 425 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE-- 171 R G + + R R + + + L + Sbjct: 426 RLRTRQAPILIGQKILVTIDRW-DTTSRYPEGHFVRALGKVESKEAEQESLLLEFEVPYR 484 Query: 172 --------------KEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKAL 217 ++ + E REDL L +ID + +D+DDAL A+ L Sbjct: 485 PFGKAILDCLPPQGEQWVVPPKSPDSPEWKDREDLRGLIICSIDPPNCQDIDDALHARKL 544 Query: 218 PDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANE 277 P+ ++ V IAD + ++ + +D A R T YL I MLP L +LCSLR Sbjct: 545 PNGNIEAGVHIADVSHFVHPDNPMDSEAASRGTTVYLVDKRIDMLPSLLGTNLCSLRPFV 604 Query: 278 VRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQV 337 R + ++ + I N+ F + I SKA Y++ D + + + + + Sbjct: 605 ERLAFSAIWEMTPEAEIV-NVRFTKSVIASKAAFTYEEAQ----IRKDDPHQQDELTQSI 659 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILG--EKGEVLDIVAEPRRIANRIVEEAMIA 395 RLL + + R + P+ + L E + +D+ + R N +VEE M+ Sbjct: 660 RLLNSLALKLKAGRMAAGALNLASPEVKIQLDTSESSDPIDVEQKELRETNSLVEEFMLL 719 Query: 396 ANICAARVLRDKLG-FGIYNVHMGFDPANADALAA-LLKTHGLHVDAEEVLTLDGFCKLR 453 ANI AR +++ + H+ N + L L+K G+ +D L L Sbjct: 720 ANISVARKIQETFPQTAVLRRHLPPPRTNFEKLQDILMKRKGMKLDVSSSGALAASLDLC 779 Query: 454 RELDAQPTGFLDSRIR-RFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMI 506 + + L + R AE + + H+GL Y +TSPIR+Y D++ Sbjct: 780 VDPELPAFNTLVRIMATRCMLSAEYFCSGSVARDTFGHYGLASPIYTHFTSPIRRYADVL 839 Query: 507 NHRLLKAVIKGET------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT 560 HR L A I + + + + + R+ +MA R ++ LK++ Sbjct: 840 AHRQLAAAIGYTPLHATLHSKTHVERVLDVVNRKHRMAQMAGRASVEFYVGLALKNRGER 899 Query: 561 DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV---RDELVCSQENGTVQI----K 613 + + ++ +R NG F+ + + + + +N T+ + Sbjct: 900 EKEKKGTVGEVREEAFVIRTFRNGLGVFVSKLGIEGLVMFKRDNQFDADNYTITVPSGGG 959 Query: 614 GETVYKVTDVIDVTIAEVRMET 635 + V D ++V+I EV + Sbjct: 960 KDVTISVFDKVEVSI-EVEKDK 980 >UniRef50_C9RQ37 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQ37_FIBSS Length = 812 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 134/604 (22%), Positives = 208/604 (34%), Gaps = 49/604 (8%) Query: 66 SEKERESAEPEELVEPFLTRFV--GKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 + R A E V G + D V + K Sbjct: 85 EDNRRPGARSRRQTEKDSGTRVKRGILHQTGDEDWQV---TEIDTGKVYEMCHRRQAPGK 141 Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARH----NLEKEAPDGVA 179 EG+ + HP L + + V W + NL K + Sbjct: 142 EGETISFTLYPHPKLKHSY----LAKVDRSAEIMNVTWDEVKKKFMEESNLPKGFSPAIE 197 Query: 180 TEM-------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 + + R D LD + ID D DDA+ + P+ +L V IAD + Sbjct: 198 KYVASITDPTEKDFKGRVDYRKLDILCIDPEGAMDHDDAISVERKPNGGYKLGVHIADVS 257 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ EGS LD+ A R++T YLP +PMLP +LS +CSL R C + L + Sbjct: 258 YYVPEGSDLDEEALERSYTQYLPWTAVPMLPEKLSSGVCSLHEGVDRCAFTCMIDLDKEA 317 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 + +F + + + Y Q +E D ++ LA++ R Sbjct: 318 NVL-GWDFHRSVVNITKGITYQQAVKMMEEGDD----------SIKALAEVTALLKRNRT 366 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 L+ +Y E GE + I +N VEE M+ AN C A+ L+ + GI Sbjct: 367 KDGLLEFQTTEYGCKFNENGEPVKIFPREHDDSNSWVEECMLIANNCCAKELKQRKLQGI 426 Query: 413 YNVHMGFDPANADAL-----------AALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT 461 Y +H D + L +L+ G + L F KL L + Sbjct: 427 YRIHEAPDTKDIMELYYMYPDLFKDAPVMLRDLGKPRSGDTNLNPVAF-KLYEHLVKRAA 485 Query: 462 G--FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 G L +RI R A + HF L + Y+ +TSPIR+Y D+ HR L K Sbjct: 486 GDETLTNRILRSMQKAHYDSNSFGHFALNWQDYSHFTSPIRRYADLWCHRELARKGKEID 545 Query: 520 ATRPQD--EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 A R E+ ++ N ER LK + G F A + I G+ Sbjct: 546 AERVNSVIEVCDLISANEIKNMKVERISIKVCSCWILKSRIGDS--FEASVTGIEEWGIY 603 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 V + D A + + + + + ++ D + V + V Sbjct: 604 VSIDDPIAEGLVRYRDITGDDFYVFNPDQGLAFGKRSGRTFRRGDKVMVQLLRVDPLRGQ 663 Query: 638 IIAR 641 Sbjct: 664 ADFS 667 >UniRef50_Q30T59 RNAse R n=2 Tax=Campylobacterales RepID=Q30T59_SULDN Length = 649 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 140/639 (21%), Positives = 251/639 (39%), Gaps = 60/639 (9%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIA-VIHSEKERES 72 + G + + G +L V + + FI + K GD +IA + ++ S Sbjct: 43 KFNSKYRAGTLGLVQNGTAYLHVIGEYVRDLFIDDVESSKAKEGDLVIAQRLLGKRGSPS 102 Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 A+ E++ T V + K+ + ++V I + +K+GD V ++ Sbjct: 103 AKIVEVLGRAQTYSVAYIITKDAKKSLV--DLKTDFPIGVEITQDELESYKDGD--VFKI 158 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-------LDE 185 + + + D V + LA +N V + Sbjct: 159 NNQDFT--------IMELLGNIKDPLVDEKIVLAHYNKHDAFEPEVLEIASSFTEVDASK 210 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 +R DL L F TID + +D DDA++ L VAIAD + ++ +D A Sbjct: 211 HPLRVDLRKLPFCTIDPVTAKDFDDAIYYDEKES---TLYVAIADVSYYVEPFGAIDNEA 267 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 R+F+ YLP +IPMLPRELS+ LCSL+ + R M L + + + + A I Sbjct: 268 IYRSFSIYLPHRSIPMLPRELSETLCSLQPHVDRLAYVFEMKLDLETLEVSSSKVYEAII 327 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESE-AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 S+ + Y++V + E + Q SE I E + L I R F+ + Sbjct: 328 HSQRRFNYEEVDELFEGNLEPQNPSEIEIFEYIHKLRVITDALKAKRLKIGYNFR-SNEL 386 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 L + + ++ ++E+ M+ AN AA+ + GI+ +H + Sbjct: 387 EMFLDKNSNISSTSYAEETPSHALIEDCMLLANKEAAK----RFTRGIFRIHEPPNQMKL 442 Query: 425 DALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPH 484 L L G+ ++ ++ + ++ + +D+ I + Q A + H Sbjct: 443 QNLYQELAGIGMFINIKKSIKETITEIQKQAAEMNLVSEVDTLIIQSQMQARYAPINAGH 502 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVI-----KGETATRPQDEITVQMAERRRLNR 539 FGLG + Y +TSPIR+Y D+I HRLLKA+ +G R + + + ++E+ R Sbjct: 503 FGLGFDEYTHFTSPIRRYSDLIVHRLLKAISNHDTTEGSYVLRNIESLCMSVSEKEREAS 562 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 E + +AR+ + D F+A + + L D + R Sbjct: 563 TIEVEFMARKFARWAAENI--DELFSARVTSTDPF-FKAELHDT----------ISGARF 609 Query: 600 ELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 + + + + D + V I +V + I Sbjct: 610 YITHNLDAA-----------LFDDVKVRIDKVDIAKAKI 637 >UniRef50_Q08162 Exosome complex exonuclease DIS3 n=24 Tax=Saccharomyceta RepID=RRP44_YEAST Length = 1001 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 127/618 (20%), Positives = 223/618 (36%), Gaps = 64/618 (10%) Query: 65 HSEKERESAEPEELVEPFLTRFVGKV-------QGKNDRLAIVPDHPLLKDAIPCRAARG 117 S+K + +A+ + ++VG++ Q + + V +L D + Sbjct: 382 RSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFV----ILMDKCLPKVRIR 437 Query: 118 LNHEFKEGDW-AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN------- 169 + D V + P + + + + L H+ Sbjct: 438 TRRAAELLDKRIVISIDSWPTT-HKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFS 496 Query: 170 ------LEKEAPDGVATEMLDEGLV---------REDLTALDFVTIDSASTEDMDDALFA 214 L E D A LD+ R+DL +ID D+DDAL A Sbjct: 497 KKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDIDDALHA 556 Query: 215 KALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274 K LP+ ++ V IAD T ++ G+ LD R + YL I MLP L DLCSL+ Sbjct: 557 KKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLK 616 Query: 275 ANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA 334 R + L I N+ F + I S+ Y+Q +++ + +++ + Sbjct: 617 PYVDRFAFSVIWELDDSANIV-NVNFMKSVIRSREAFSYEQAQLRIDD----KTQNDELT 671 Query: 335 EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAM 393 +R L ++ + + R + P+ + + E + ++ + N +VEE M Sbjct: 672 MGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFM 731 Query: 394 IAANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTH-GLHVDAEEVLTL-DGFC 450 + ANI AR + D + H N + L +L T + + E L D Sbjct: 732 LLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLD 791 Query: 451 KLRRELDAQPTGFLDSRIRRFQSFAE------ISTEPGPHFGLGLEAYATWTSPIRKYGD 504 + D + R A+ S H+GL ++ Y +TSPIR+Y D Sbjct: 792 RCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCD 851 Query: 505 MINHRLLKAVIKGETA------TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKA 558 ++ HR L I E D I + + R + A R ++ + +++ Sbjct: 852 VVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNE 911 Query: 559 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL-----HAVRDELVCSQENGTVQIK 613 T+T + ++ + G+ V + G I L A DE+ Sbjct: 912 STETGY---VIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSD 968 Query: 614 GETVYKVTDVIDVTIAEV 631 V D ++V + V Sbjct: 969 KPRDVYVFDKVEVQVRSV 986 >UniRef50_Q46363 Acetazolamide conferring resistance protein zam n=8 Tax=Chroococcales RepID=ZAM_SYNY3 Length = 782 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 128/689 (18%), Positives = 250/689 (36%), Gaps = 66/689 (9%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKE 69 K ++ E ++ + KGF F D + ++ + +GDR++ + + Sbjct: 57 KYNRVTREDVVEARLRCSSKGFCFAIQDDEDATDIYVREGNLSNAWNGDRVLVKVIKDGT 116 Query: 70 RESAEPEE---LVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 R + E+ +++ + +V+ D VP L + + E + Sbjct: 117 RRKSPEEQVHLILDRANPSLLAQVKKSEDNYRAVPLDDRLLFELELQDKEQNLGEAVD-H 175 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA-PDGVAT-EMLD 184 + R+P+ E+T+ + + + +H+L P+ + + L Sbjct: 176 LVHVSVLRYPI-AQHPPLGEVTKVLGSDAEAAADTDIVSCKHDLPLGWTPEAIEALQSLP 234 Query: 185 EGLVREDLTALDFVTI--------DSASTEDM---DDALFAKALPDDKLQLIVAIADPTA 233 + + +L ++T D E + + AL ++ + + Q+ + I D Sbjct: 235 KVIEPGELKKRTWITAKLQLVTFGDGPRGETLPWQEVALSLESQAN-QWQVGIHITDIAH 293 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 +IAE S LD+ A+ R T YL P+ P L CSL +E R L+ +T+ G Sbjct: 294 YIAEDSLLDQLARKRGTTVYLEEQICPLFPEGLI-GRCSLIPDEDRLALSFFLTVDDRGE 352 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL-AQICQRRGEWRH 352 + E+ ++ ++ +L + +V L + E + ++ L QIC R Sbjct: 353 VT-GFEYHSSVVKVDHQLDFSEVQTALADIESVSGELKPYGGLLQELFFQICPLIKSQRL 411 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 L E G + I+ + ++ E M+ A L+ G+ Sbjct: 412 QRGSFNLQTETASPRLDE-GRLGVIMTQETLPIRSLLAELMVVLQREVALQLQALGIPGL 470 Query: 413 YNVHMGFDPANADALAALLKT--HGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIR 469 Y + + + + L G+ +D E + + L + ++ P L+ + Sbjct: 471 YCGQVAPEGEDLTDIVKLAGNLDLGVKIDLEGDIIPQHYHHLSQGFESLPAKAVLNHLLA 530 Query: 470 RFQSFAEISTEPGPHFGLGLEA-YATWTSPIRKYGDMINHRLLKAVIKG----------- 517 + + P PHF L ++ Y SP ++YGD++ RLLK V+ Sbjct: 531 NTLKIEKYFSHPAPHFALAYDSGYTHCVSPAQRYGDLVIQRLLKLVLTEGRDRRTKQMKT 590 Query: 518 -----------------------ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFL 554 ET ++ + + +R + AE+D+ A + Sbjct: 591 GVELNAHTCRNQISWNVLPPNLQETIEGDLHQLVLGLNDREQTAEDAEKDLLGLKKAEKM 650 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKG 614 K +AG F I + G V++ D A + L E Q V K Sbjct: 651 KARAGE--IFRGLITGVQSYGFFVQIFDLLAEGLVHVSSLKDDWYEFRSRQ-CALVGRKS 707 Query: 615 ETVYKVTDVIDVTIAEVRMETRSIIARPV 643 T Y++ + +DV + V + I V Sbjct: 708 RTSYRLGNEVDVQVRSVDYYRQQIDLGAV 736 >UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XYF0_BRAFL Length = 813 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 125/566 (22%), Positives = 215/566 (37%), Gaps = 56/566 (9%) Query: 70 RESAEPEELVEPFLTRF-VGKVQG-----KNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 +++A+ + E +R G ++ + L DH L + +P E Sbjct: 193 QKTAKVVYIYEKKHSRACTGHLKKLDDKDREKVLFSPIDHRLPRLKVPLEDCPAGFKERP 252 Query: 124 EGD---WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN----------- 169 E +A + + A L + + L + Sbjct: 253 EDHAKFLFIARITDW-KEDSGFAEARLAKSLGEAGQIEPETEGLLVENGVDFSEFSEVVL 311 Query: 170 --LEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 L ++ P + E + R DL TID A+ D+DDA+ L D ++ V Sbjct: 312 QCLPQDLPWSIPAEEFEN---RRDLRLDCIFTIDPATARDLDDAVSCNKLDDGTYEVGVH 368 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + +I E + LD A RA + YL IPMLPR L + LCSL E R + Sbjct: 369 IADVSYFIQENTALDLTAACRATSVYLVQKVIPMLPRLLCEQLCSLNPAEERLAFSVIWK 428 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-----------EAIAEQ 336 L+ G + D F I S KL YD ++N + + +AE+ Sbjct: 429 LTETGDVLDEW-FGRTIIRSCVKLSYDHAQSIIDNPDQLPTQEQLPTISDGHSIQDVAER 487 Query: 337 VRLLAQICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIA 395 V L +I Q + R + + D+P F L E G R +NR++EE M+ Sbjct: 488 VLNLYKISQNLRKKRFDGGALRLDQPKLAFSLDPESGLPNGCSVYQIRDSNRLIEEFMLL 547 Query: 396 ANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCK--L 452 AN+ A + + + H P + L T G+++D L + Sbjct: 548 ANMAVAHKIHESFPERAVLRRHPPPQPKMVEDLVKTCGTMGINLDISSSGALHQSIARYI 607 Query: 453 RRELDAQPTGFLDSRIR-RFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGD 504 +++ Q T ++ + + + A+ H+ L + Y +TSPIR+Y D Sbjct: 608 GDDVETQATFYILTAMASKPMQLAKYFCSGCLPEEGMYHHYALNVPLYTHFTSPIRRYAD 667 Query: 505 MINHRLLKAVIKGETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT 560 ++ HRLL A + A E +T +R+ ++ + D +A F+K+ Sbjct: 668 VLVHRLLGACLGCGPAVEKSAEELQGMTDHCNDRKDASKRVQEASADMFFASFVKECGPL 727 Query: 561 DTRFAAEIVDISRGGMRVRLVDNGAI 586 + ++ + + V + G + Sbjct: 728 EE--DGMVMGVLDQAVDVLVWRLGVV 751 >UniRef50_Q5MZZ6 Protein conferring resistance to acetazolamide Zam n=2 Tax=Synechococcus elongatus RepID=Q5MZZ6_SYNP6 Length = 748 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 124/682 (18%), Positives = 235/682 (34%), Gaps = 67/682 (9%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 K + + + E ++ + KGF F DA+ + +I Q+ +GDR++ + E Sbjct: 60 KYRRNEENEWVEARLRCSSKGFCFAIQDAEDAEDIYIREHQLNHAWNGDRVLVNVLREGS 119 Query: 70 RE---SAEPEELVEPFLTRFVGKV--QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R E + ++E + + ++ + + + VP L + + GL+ Sbjct: 120 RRRSPEGEVKLILERANSSVLARITEKAEGEGFRAVPLDDRLLCELDLE-SNGLDLAANR 178 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD 184 A ++R+PL ++TQ + + P + +HNL + + + D Sbjct: 179 DHLASVAVQRYPL-AQLPPVGKVTQILGSDPESASPVDLIRCKHNLPADWSEAAIAALTD 237 Query: 185 EGLV--------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 R DL ++ V I + + +D AL + Q++V + ++ Sbjct: 238 LAQTADANAIQGRLDLRSVFTVAIAADDSRPLDVALSLQPGESGGWQVMVHTVEVAPYLP 297 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 S LD A+ L +P LP L+ + E R ++ + + A G ++D Sbjct: 298 LQSDLDLEAQRHGIDLRLGETALPFLPPVLTQGVGRFAVGEDRRAVSLLIRVDATGAVQD 357 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 E + ++ L + +D L ++ +A ++ L I R Sbjct: 358 -YELQPSLVQLDQVLSPAEATDLLADSKAKGEGIKA----LKELQTIADLWRTQRRERGG 412 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 +G L +++ IA V+E +I AN L+ +Y Sbjct: 413 FELT---VTPAIGNDEGALGVISRSPAIAGA-VQEILIQANRLVTEHLQALELPVLYVGQ 468 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG----FLDSRIRRFQ 472 D + L GL ++ +E T L++ DA T LD + + Sbjct: 469 RSPDLGSIQDAQRLAAGLGLAIEVDENETELNRLALQQLSDATQTSELASLLDHLLLQTF 528 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR---------- 522 + ST PHF LGLE Y + +P ++Y D+ R++ A+ + R Sbjct: 529 KPSFYSTLAVPHFSLGLETYGHFVAPSQRYADLWLQRVILALFQQGRDRRSSRSKEGVNI 588 Query: 523 ------------------------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKA 558 + Q++E + A D A K Sbjct: 589 RHSSSHGQINWSVLPPEVQTELETDLKLLAQQLSEAEKRATEASADYQGLQKAAAAKACI 648 Query: 559 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVY 618 G FA I + G V++ + E Q+ + K + Sbjct: 649 G--QTFAGVIRGVQSYGFFVQIEALQVEGLVHVSSPKDDWYEYRSRQQR-LIGRKNRRQF 705 Query: 619 KVTDVIDVTIAEVRMETRSIIA 640 + D ++V I V + I Sbjct: 706 GLGDRVEVEIRNVDYYRQQIDL 727 >UniRef50_UPI00015B4E71 PREDICTED: similar to ribonuclease n=1 Tax=Nasonia vitripennis RepID=UPI00015B4E71 Length = 961 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 125/646 (19%), Positives = 234/646 (36%), Gaps = 73/646 (11%) Query: 5 NPLLAQL-KQQLHSQTPRAEGVVKATEKGF--GFLEV-DAQKSYFIPP-PQMKKVMHGDR 59 + ++ QL Q +G ++ + + ++ + + I + + GD Sbjct: 251 SEVVKQLLAFQDPENPNVIDGHIRINPRCYQNAYVSLATGDQDLLIVGLKDRNRALEGDL 310 Query: 60 IIAVIHSEKE---------RESAEPEELVEPFLTR-FVGKVQGKNDRLAIVPDHPL---- 105 + +I+ + + + + ++E R VG ++ ++ + + P Sbjct: 311 VAVIINPKDKWFRLTETTWQRTGTVLSILEKAHPRKAVGYLKKQDVFVFLQPRDSRVPQL 370 Query: 106 -LKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVT 164 + + +FKE + ++ K E+ Q + D V Sbjct: 371 RINPKTVPKHFYDNPDQFKET-LFLCDIVDW--KKVAFAEGEIVQIVGSKGDLSVETKAI 427 Query: 165 LARHNL---------EKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAK 215 L ++L ++ P + REDL TID A+ D+DDA+ K Sbjct: 428 LLENDLILTPYEDELLQDLPPSDYIPTEADLADREDLRETCIFTIDPATAVDLDDAMSCK 487 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 L + ++ + IAD T ++ S LDK RA T Y+ MLP++L CSL Sbjct: 488 LLENGNFEVGIHIADVTHFLEAFSPLDKKVAERATTVYMVDNVYHMLPKQLCL-ACSLLP 546 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTG-DWQPES---- 330 + + + + ++ I + F I S ++ Y Q +++ DW+ + Sbjct: 547 GQDKLAFSVILEMTPSAEIVSS-RFAKTVINSCCQMAYGQAQIMIDDESYDWEKDGSLTI 605 Query: 331 ------EAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGE-VLDIVAEPRR 383 + + VR L I R + + D+P L + E R Sbjct: 606 AGNYKPSDLVKVVRNLYNISMELKRKRFDEGALRIDQPKLIVFLDKDTRLPSSYKLEERI 665 Query: 384 IANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEE 442 +N ++EE M+ AN+ A+ L + L + H LLK G+H+D E Sbjct: 666 ESNSLIEEFMLLANMTVAKYLYETLPEVSLLRSHPEPSMRILQKTRNLLKKFGVHLDVES 725 Query: 443 VLTLDGFCKLRR------------ELDAQPTGFLDSRIRRFQSFAEI-------STEPGP 483 TL + ++ ++S + + A + E Sbjct: 726 AGTLHKTLSKYQVNLNDSGNDGSLDVAYYNMMVINSLCAKSMTRAVYKCSASVKTKEALR 785 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-----DEITVQMAERRRLN 538 H+ L E Y +TSPIR+Y D + HRLL A IK + + ++ L Sbjct: 786 HYALNAEYYTHFTSPIRRYPDCVVHRLLYASIKNQPLPSEWSSKICARVATNCNTKKYLA 845 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 +MA+ + ++ D G+ A ++D+ L D G Sbjct: 846 KMAQEQSNALYFT-YMLDLRGSMNAL-AIVMDVKERSADAMLCDTG 889 >UniRef50_A7S1B6 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7S1B6_NEMVE Length = 766 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 126/688 (18%), Positives = 240/688 (34%), Gaps = 102/688 (14%) Query: 20 PRAEGVVKATEKGF--GFLEVDAQK-SYFIPPP-QMKKVMHGDRIIAVIHSEKE------ 69 +G ++ +++ F ++ V QK ++ + + GD + I + Sbjct: 42 ELLKGALRISKRNFEMAWVSVAGQKRDVYLEGVLARNRALDGDIVALNISPRNKWKLMKH 101 Query: 70 -------------------------------------------RESAEPEELVEPFLTRF 86 +++A ++E TR Sbjct: 102 EYDAHGASHEGNKTPSKGGTTPHTPESSKNKQRKNEEIPDAYLQQTAHVVYIIEKKHTRA 161 Query: 87 V-GKVQGKNDRLAIVPD------HPLLKDAIPCRAARGLNHEFKEGDWA----VAEMRRH 135 G ++ VPD L A L + D+A V + Sbjct: 162 ASGNLKPFQYNQGDVPDGLFSPSDSRLPRMRIPHAKCPLGFFDRPQDFASTLFVGRITEW 221 Query: 136 PLKGDRS---FYAELTQYITFGDDHFVPWWVTLARHNL-EKEAPDGVATEMLDEG----- 186 P E+++ + + + + PD + E Sbjct: 222 PENAPMDNFFATGEISRSLGEAGEIEPETQGIFFEYGIDPGPFPDEALDCLPKETPWSIP 281 Query: 187 ----LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 R D TID + D+DDAL K L D +++ V IAD + ++ G+ LD Sbjct: 282 ETEFAHRRDFRDECVFTIDPLTARDLDDALHCKRLSDGLIEVGVHIADVSFFVKTGTPLD 341 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A+ RA + Y+ +PMLPR L ++LCSL +E R + ++ G I+ + + Sbjct: 342 DIAQERATSTYMVQTVVPMLPRRLCEELCSLNPDEDRLTFSVVWIMTDQGEIKSDWK-GR 400 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESE-----------AIAEQVRLLAQICQRRGEWR 351 I S+ K+ Y+ + ++ +SE I ++V LLA+I ++ R Sbjct: 401 GIIRSRVKMAYEHAQEMIDKPNKKWSDSELPPIAEGTDVSEIVKRVNLLAKIARQLRRNR 460 Query: 352 HNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 + + D+ +F L E G + +R +N+++EE M+ AN+ A + Sbjct: 461 FENGALRLDQVKLQFDLDKETGMPIGYHVYQQRESNKLIEEFMLLANMTVAHHIYKAFPD 520 Query: 411 -GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 + H + L L + G+ +A ++ AQ + ++ Sbjct: 521 MALLRRHPKPHEKQMEDLLELCRNLGIKYNANSSKSIQVSLAQFPSGSAQHEILVQLTMK 580 Query: 470 -----RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR-- 522 + + E H+ L + Y +TSPIR+Y D+I HRLL A ++ Sbjct: 581 PMKNALYFCAGTVEEEEYGHYALSVPLYTHFTSPIRRYADVIVHRLLAASLELAEPLDKD 640 Query: 523 --PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 D I + + + A + +A F+++ + ++ I V + Sbjct: 641 AVDVDSIAGHCNDCKLAAKTAGELSSELFFAIFVRECGPLEE--DGYVLGIMDMSFDVFV 698 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENG 608 G I F V+ + ++ Sbjct: 699 PALGVTKRIYCKFCPGVKRYVPYDRKEQ 726 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU 684 0.0 UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans... 680 0.0 UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR4... 677 0.0 UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_... 670 0.0 UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_N... 668 0.0 UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K40... 665 0.0 UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID... 664 0.0 UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5... 663 0.0 UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentan... 660 0.0 UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID... 660 0.0 UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RN... 657 0.0 UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=... 655 0.0 UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms Re... 652 0.0 UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms Re... 652 0.0 UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepI... 651 0.0 UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria R... 651 0.0 UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1... 650 0.0 UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_A... 650 0.0 UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID... 650 0.0 UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ... 649 0.0 UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V... 647 0.0 UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR... 647 0.0 UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteri... 646 0.0 UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH 646 0.0 UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR 645 0.0 UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE 643 0.0 UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbi... 642 0.0 UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingell... 641 0.0 UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX... 640 0.0 UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_A... 640 0.0 UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis ... 638 0.0 UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica AT... 637 0.0 UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6... 637 0.0 UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacteri... 636 0.0 UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 R... 636 0.0 UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z97... 634 e-180 UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 634 e-180 UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B... 634 e-180 UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_... 634 e-180 UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia A... 631 e-179 UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostri... 631 e-179 UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wol... 631 e-179 UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM... 630 e-179 UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR... 628 e-178 UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 624 e-177 UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M94... 623 e-177 UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolit... 623 e-177 UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis A... 620 e-176 UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ... 619 e-176 UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM... 618 e-175 UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdema... 618 e-175 UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni Re... 618 e-175 UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=... 616 e-175 UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RH... 616 e-174 UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13... 615 e-174 UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KP... 612 e-173 UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_... 611 e-173 UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deino... 610 e-173 UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candida... 610 e-173 UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=... 609 e-172 UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yello... 608 e-172 UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DS... 608 e-172 UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM ... 607 e-172 UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS... 607 e-172 UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU 606 e-172 UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13... 606 e-172 UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN 606 e-171 UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group ... 604 e-171 UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BN... 603 e-171 UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_... 603 e-170 UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bactero... 602 e-170 UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 ... 601 e-170 UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP 600 e-170 UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6... 600 e-170 UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazo... 599 e-170 UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID... 599 e-169 UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_... 598 e-169 UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus E... 597 e-169 UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9... 594 e-168 UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 606... 593 e-168 UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J... 591 e-167 UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 ... 589 e-167 UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9... 589 e-166 UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria R... 588 e-166 UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kue... 588 e-166 UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 588 e-166 UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 587 e-166 UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter ver... 587 e-166 UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacte... 587 e-166 UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q... 586 e-166 UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID... 586 e-165 UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens ... 585 e-165 UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimo... 584 e-165 UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7... 581 e-164 UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37... 581 e-164 UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria R... 581 e-164 UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DS... 581 e-164 UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum... 581 e-164 UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidan... 579 e-164 UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ell... 579 e-163 UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=... 578 e-163 UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus... 578 e-163 UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria ... 578 e-163 UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 154... 577 e-163 UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovoru... 574 e-162 UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=... 573 e-162 UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC ... 571 e-161 UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1... 570 e-161 UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QP... 568 e-160 UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 568 e-160 UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaeroc... 567 e-160 UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=... 567 e-160 UniRef50_C9R3S6 Exoribonuclease II n=7 Tax=Gammaproteobacteria R... 567 e-160 UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea p... 566 e-160 UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=... 565 e-159 UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H... 562 e-158 UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID... 562 e-158 UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_V... 561 e-158 UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferroox... 561 e-158 UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerof... 560 e-158 UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacte... 558 e-157 UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiropla... 553 e-156 UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n... 552 e-155 UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0L... 551 e-155 UniRef50_Q65SI5 Exoribonuclease 2 n=36 Tax=Gammaproteobacteria R... 550 e-155 UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiacea... 549 e-154 UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus ... 547 e-154 UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1... 547 e-154 UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostri... 546 e-154 UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepI... 545 e-153 UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopath... 545 e-153 UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellular... 544 e-153 UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatu... 541 e-152 UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 87... 541 e-152 UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyr... 539 e-151 UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n... 536 e-151 UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfurica... 536 e-151 UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ri... 534 e-150 UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_... 532 e-149 UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured mar... 531 e-149 UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group Re... 530 e-149 UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoo... 527 e-148 UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax... 527 e-148 UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n... 527 e-148 UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metaz... 526 e-148 UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n... 525 e-147 UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_... 522 e-146 UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostri... 521 e-146 UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma syn... 521 e-146 UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCT... 521 e-146 UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica Re... 521 e-146 UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ... 521 e-146 UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma... 520 e-146 UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota R... 519 e-145 UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes sc... 519 e-145 UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n... 518 e-145 UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacter... 517 e-145 UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collins... 516 e-145 UniRef50_B0EIJ5 Exosome complex exonuclease RRP44, putative n=2 ... 516 e-144 UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloac... 516 e-144 UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases ... 516 e-144 UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0... 515 e-144 UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 70012... 512 e-143 UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n... 512 e-143 UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfo... 510 e-143 UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR... 509 e-142 UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacte... 509 e-142 UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyo... 509 e-142 UniRef50_D1HK82 Whole genome shotgun sequence of line PN40024, s... 508 e-142 UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensi... 508 e-142 UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotr... 507 e-142 UniRef50_Q54BH9 Putative uncharacterized protein n=1 Tax=Dictyos... 505 e-141 UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella ... 505 e-141 UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 Re... 503 e-140 UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 498... 502 e-140 UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azoba... 502 e-140 UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 T... 501 e-140 UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA 499 e-139 UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n... 499 e-139 UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n... 498 e-139 UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organ... 497 e-139 UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribo... 496 e-139 UniRef50_P37202 Exosome complex exonuclease dis3 n=4 Tax=Ascomyc... 495 e-138 UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobac... 494 e-138 UniRef50_Q0CT74 Mitotic control protein dis3 n=35 Tax=Saccharomy... 494 e-138 UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilag... 493 e-137 UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosac... 493 e-137 UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8... 492 e-137 UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosacch... 492 e-137 UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam ... 491 e-137 UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q2... 491 e-137 UniRef50_A7AWK8 RNB-like domain containing protein n=1 Tax=Babes... 489 e-136 UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID... 489 e-136 UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 ... 488 e-136 UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_... 487 e-136 UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB... 487 e-136 UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis R... 485 e-135 UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma con... 484 e-135 UniRef50_A7S1B6 Predicted protein (Fragment) n=1 Tax=Nematostell... 484 e-135 UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE... 484 e-135 UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus ... 484 e-135 UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila... 484 e-135 UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic contro... 484 e-135 UniRef50_Q8TF46-4 Isoform 4 of DIS3-like exonuclease 1 n=13 Tax=... 482 e-134 UniRef50_Q8TF46 DIS3-like exonuclease 1 n=22 Tax=Deuterostomia R... 482 e-134 UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID... 481 e-134 UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN 480 e-134 UniRef50_C5KND9 Exosome complex exonuclease rrp44, putative n=3 ... 480 e-134 UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuc... 480 e-134 UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY... 479 e-133 UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n... 476 e-133 UniRef50_UPI000180BAF4 PREDICTED: similar to DIS3 mitotic contro... 474 e-132 UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agarica... 474 e-132 UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ... 473 e-132 UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegle... 472 e-131 UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma ... 472 e-131 UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clu... 469 e-130 UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosacch... 469 e-130 UniRef50_A4S559 Predicted protein n=3 Tax=Mamiellales RepID=A4S5... 468 e-130 UniRef50_UPI00019264F3 PREDICTED: similar to DIS3 mitotic contro... 467 e-130 UniRef50_A0CC06 Chromosome undetermined scaffold_166, whole geno... 467 e-130 UniRef50_Q08162 Exosome complex exonuclease DIS3 n=24 Tax=Saccha... 467 e-130 UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 466 e-129 UniRef50_D0A7T6 Exosome complex exonuclease RRP44p homologue, pu... 465 e-129 UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 ... 463 e-128 UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria Rep... 462 e-128 UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis ME... 462 e-128 UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobi... 462 e-128 UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_S... 462 e-128 UniRef50_C1N1M6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 461 e-128 UniRef50_Q8IYB7 DIS3-like exonuclease 2 n=29 Tax=Tetrapoda RepID... 460 e-128 UniRef50_UPI00015B4E71 PREDICTED: similar to ribonuclease n=1 Ta... 460 e-128 UniRef50_Q4Q8N7 Rrp44p homologue, putative n=4 Tax=Trypanosomati... 460 e-128 UniRef50_B0D4A4 Predicted protein n=9 Tax=Dikarya RepID=B0D4A4_L... 460 e-127 UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 ... 459 e-127 UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariop... 459 e-127 UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera ara... 458 e-127 UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepI... 458 e-127 UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria R... 458 e-127 UniRef50_Q5KDY7 SSD1 protein, putative n=4 Tax=Agaricomycotina R... 457 e-127 UniRef50_UPI0000D56C52 PREDICTED: similar to exosome complex exo... 457 e-127 UniRef50_Q4T2G1 Chromosome undetermined SCAF10273, whole genome ... 455 e-126 UniRef50_D2V5N5 Predicted protein (Fragment) n=1 Tax=Naegleria g... 455 e-126 UniRef50_B9PKJ2 Mitotic control protein dis3, putative n=1 Tax=T... 453 e-125 UniRef50_Q09568 Uncharacterized ribonuclease F48E8.6 n=3 Tax=Cae... 453 e-125 UniRef50_C5BR14 Exoribonuclease II n=1 Tax=Teredinibacter turner... 451 e-125 UniRef50_UPI0000E47D53 PREDICTED: hypothetical protein, partial ... 451 e-125 UniRef50_B6AH31 Exosome complex exonuclease RRP44, putative n=1 ... 450 e-125 UniRef50_UPI0000DB782F PREDICTED: similar to CG16940-PA, isoform... 448 e-124 UniRef50_Q46363 Acetazolamide conferring resistance protein zam ... 444 e-123 Sequences not found previously or not previously below threshold: >UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU Length = 779 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 153/660 (23%), Positives = 277/660 (41%), Gaps = 35/660 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHS 66 + + + +G + A KGF FL + FIPP ++ M+GD ++ ++S Sbjct: 59 RSDRYGIPEKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNS 118 Query: 67 E--KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 + R+ ++E + R VG + ++PD + I + + E Sbjct: 119 QSSGSRQEGTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFI--PKNGKNGAAE 176 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 G V ++ +P +G + E+ + +D + + +H L E P + Sbjct: 177 GHKVVVKLTSYP-EGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASS 235 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + R DL VTID A +D+DDA+ L D +L V IAD + ++ Sbjct: 236 TPDTIDEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVT 295 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S +DK A R + YL IPM+P LS+ +CSL R L+C MT+++ G + + Sbjct: 296 ENSPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTE 355 Query: 297 NIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + E F + I++ ++ Y V+ L ++ + + + E + + + ++ Q + R + Sbjct: 356 H-EIFQSVIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRG 414 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 V D + + ++ ++G V D+V R +A +++EE M+ AN A IY + Sbjct: 415 AVDFDFKEAKVLVDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474 Query: 416 HMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQPTG-FLDSRIRRFQS 473 H + + T G V + + + +P + + + R Sbjct: 475 HEEPNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMK 534 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT--------RPQD 525 A+ + HFGL E Y +TSPIR+Y D+I HRL++ + Sbjct: 535 QAKYDPQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLP 594 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 +I + R AER+ D A ++ DK G + F I ++ GM V L N Sbjct: 595 DIAEHTSSMERRAVDAERETDDLKKAEYMLDKIGEE--FDGMISSVTNFGMFVELP-NTI 651 Query: 586 IAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + F+ D+ E + + V+++ D I V + +V + R+I V Sbjct: 652 EGLVHVSFM---TDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIV 708 >UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP83_CLOCL Length = 785 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 161/667 (24%), Positives = 286/667 (42%), Gaps = 35/667 (5%) Query: 1 MFQDNPLLAQL--KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMH 56 M ++ ++ + ++ G ++ KGFGF+ D + K FIP QM +H Sbjct: 45 MEKEGTIIKTRTENYGVPARMNLIIGKLQGHSKGFGFVIPDEEGVKDVFIPSSQMGGAIH 104 Query: 57 GDRIIAVIH---SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 GDR++A I ++ E ++E +G + + ++P+ + I Sbjct: 105 GDRVVAKITFGEKNGKKCEGEIIRILERNTKEVIGTYEDSRNFGFVIPEDKRISFDIFV- 163 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 + K G + E+ +P R+ ++ + D + + +H L +E Sbjct: 164 -PKNFRSGAKTGQVVICEILEYPDDSRRNPEGKIKNILGNKGDKGIDILTIIKKHGLPEE 222 Query: 174 APDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 P V E R DL + VTID +D+DDA+ L + L Sbjct: 223 FPAKVLDAAESIDEEIPDKEIARRRDLRDMMMVTIDGEDAKDLDDAVSLSKLDNGNYYLG 282 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 V IAD T ++ E SKLD A +R + YL IPMLPR+LS+ +CSL R L C Sbjct: 283 VHIADVTHYVKESSKLDNEAFLRGTSTYLIDRVIPMLPRKLSNGVCSLNPKVDRLTLTCF 342 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQIC 344 M ++ G + +N E + I++ A++ Y V+ L + + E + + + + ++ Sbjct: 343 MEINDKGKV-ENHEIVESIIKTNARMTYTNVTKILRDKDQELIEEYKELVPMFQAMEELQ 401 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 R V D + + IL E G+ +DI R IAN+I+EE M+A N A + Sbjct: 402 HILEAKRKKRGAVDFDFQECKIILNEMGKPVDIKPYERAIANKIIEEFMLACNETIAEHM 461 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGF 463 +Y +H + + + G V + + ++ ++ + Sbjct: 462 FWSKMPFVYRIHEEPNEEKLEHFNEFARNLGYVVKKTKEVHPKHLQEIVEQVKGKKEETV 521 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG------ 517 +++ + R A S E HFGL + Y +TSPIR+Y D+ HR++K+ I G Sbjct: 522 INTLLLRSMMQARYSPESLGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKSFINGKIDEKY 581 Query: 518 -ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + T ++ ++Q +ER R + AER+V D A ++ D+ G + I ++ GM Sbjct: 582 MKKLTVTVEKASLQSSERERAAQDAEREVDDLKKAEYMSDRIGE--VYEGIISSVTNFGM 639 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRME 634 V L +N I L D+ E+ + + + +Y++ D I + + +V + Sbjct: 640 FVEL-ENTVEGLIHISTL---NDDYYVYDEDRLWLLGERTKNIYRLGDSIKIIVDKVDLA 695 Query: 635 TRSIIAR 641 I Sbjct: 696 AHEIYFE 702 >UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR40_CLOB8 Length = 755 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 159/671 (23%), Positives = 289/671 (43%), Gaps = 40/671 (5%) Query: 1 MFQDNPLLAQLKQQL------HSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMK 52 M + ++ K + H + G +++ KGFGFL + QK FIP + Sbjct: 65 MENEGLIIRTKKDKYMIANANHEEEGLIIGSLQSHSKGFGFLIPEEEGQKDVFIPSNCIN 124 Query: 53 KVMHGDRIIAVIHSEK---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA 109 M+GD+I + E ++ E E++E TR VG + + +V + P + Sbjct: 125 GAMNGDKISVRVTREDTKTKKREGEVVEIIERNTTRIVGVYEDSKNFGFVVSEDPRISKD 184 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 + ++ + +GD ++ + P + + +T+ + D + + + + Sbjct: 185 VFI--SKKDRNGANDGDVVTVKITKWPEENRK-AEGVVTEVLGRKGDRGIDILMIIKKLG 241 Query: 170 LEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDK 221 L +E + V +E R DL L VTID +D+DDA+ + L + Sbjct: 242 LPEEFSEKVQKYAEGISDEIDEEEYKGRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGN 301 Query: 222 LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPV 281 +L V IAD T ++ E S LDK A RA + YL +PMLPR+LS+ +CSL R Sbjct: 302 FKLGVHIADVTHYVKENSPLDKEALKRATSVYLIDRVVPMLPRKLSNGICSLNPRVDRLT 361 Query: 282 LACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLL 340 L C M + G + D+ E + I++ ++ Y V+ L +N + + + + +++ Sbjct: 362 LTCFMEIDHKGKVVDH-EIVESVIKTNERMTYKDVTKILRDNDEELIKRYDYLVDDFKMM 420 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 ++C R + + + + L E G+ ++I R I+NR++EE M+AAN Sbjct: 421 EELCGILRNKRTKRGAIDFEIAEAKITLNELGKPIEIKPYDREISNRMIEEFMLAANETV 480 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-Q 459 A + +Y +H D + G + E + F ++ ++ Sbjct: 481 AEHMFGTHLPFVYRIHESPDEEKLAKFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKN 540 Query: 460 PTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 + + + R A + E HFGL E Y +TSPIR+Y D+ HR++K + GE Sbjct: 541 EETVVSTLLLRSMMQARYAPECSGHFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYLHGEV 600 Query: 520 ATRPQDEI-------TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 +++ Q +E R + AER+V D A +++++ G + F I ++ Sbjct: 601 DGTRINKLKNIVGYAAKQSSEMERKAQDAEREVDDLKKAEYMQERIGQE--FEGIISSVT 658 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN--GTVQIKGETVYKVTDVIDVTIAE 630 G+ V L N + L D+ E + + + +YK+ D + V Sbjct: 659 SFGIFVELP-NTIEGLVHITDL---DDDYYIFNEANLSLIGERTKKLYKLGDKVKVECVN 714 Query: 631 VRMETRSIIAR 641 V + R I + Sbjct: 715 VDITNREIFFK 725 >UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_CLOCE Length = 788 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 159/654 (24%), Positives = 276/654 (42%), Gaps = 30/654 (4%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSE-- 67 + + S+ G ++ E+G+GFL D + + FIP + MH DR++A ++ + Sbjct: 62 RYGVPSRLNLVTGRIQGHERGYGFLIPDDELMEDVFIPADSLNGAMHNDRVVARVNKKSS 121 Query: 68 -KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + E +++ T VG + +VPD+ + I ++ H K+G Sbjct: 122 SDRKMEGEIIRILKRANTTLVGTFENSMSFGFVVPDNKRISGDIFV--SKSEFHGAKKGQ 179 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---- 182 V E+ ++P + R+ + + I ++ V + +NLE++ P+ V + Sbjct: 180 KVVVEILKYP-EARRNAEGRVIEIIGDRNETGVDILSIIKSYNLEEDFPEDVLNQANSIG 238 Query: 183 ----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 + R DL L VTID +D+DDA+ + L + +L V IAD T ++ E Sbjct: 239 DTVTEEMIQGRRDLRGLRMVTIDGEDAKDLDDAVSIETLENGNYRLGVHIADVTNYVTEN 298 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S LD A R + YL IPMLPR+LS+ +CSL + R + + + +G ++ Sbjct: 299 SPLDLEALDRGTSVYLVDRVIPMLPRKLSNGICSLNPHVDRLSFSVMIDIDKNGKAYNH- 357 Query: 299 EFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 E F + I ++ Y V L EN + + + + ++ + R + Sbjct: 358 EIFESVINIDERMTYTNVYKILEENDQELIKRYSHVVSDFQKMKELALILRKKRFQRGAI 417 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 D + R ++ EKG+ +D+ IAN+I+EE M+A N A +Y +H Sbjct: 418 DFDFDEARVVIDEKGKPIDVKRYEITIANQIIEEFMLACNETVAEHFFWTNTPFVYRIHE 477 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAE 476 D L L G + + L ++ + + + + R A Sbjct: 478 DPDEEKIHNLNEFLYNLGYSIKGINKIHPRALQDLLEKVKGTRHERIISTAMLRSLQKAR 537 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-------QDEITV 529 S E HFGL + Y +TSPIR+Y D+I HR++K +KG + EI Sbjct: 538 YSNESTGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKLYLKGGMSEEKINHLEGILPEIAK 597 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 Q +ER R AER+ D ++K G F I +++ GM + L DN + Sbjct: 598 QCSERERAADEAERESEDLKKVEYMKAHEGE--IFEGIIANVTSFGMFIEL-DNTIEGLV 654 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + V + +Y++ D + V +A+ + R I V Sbjct: 655 RMSSMEDDYYNYN-ESHYCLVGERTRKIYRIGDSVKVILAKADVAARKIEFILV 707 >UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_NATTJ Length = 709 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 144/670 (21%), Positives = 282/670 (42%), Gaps = 35/670 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMH 56 M +D ++ L + G ++ KG+ FL D F+ P + +H Sbjct: 46 MTRDGQIVKTRYGYYGLPERMNLQIGTIQGHPKGYAFLLPDKPGSPDVFLSPKSLNGALH 105 Query: 57 GDRIIAVIHSE---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 D+++ IH E ++ E ++ ++ VG + +VPD + Sbjct: 106 NDKVLVRIHKEEMLNQKPEGEVVRIISRGMSEVVGTFDKSDRFGFVVPDDDRFFRDVFI- 164 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 + + K G VA++ P ++ E+ + I D V + ++ L ++ Sbjct: 165 -NKADANGAKNGQKVVAQITGWPDTPAKNPEGEIIKVIGNPSDPGVDIETIINKYGLSED 223 Query: 174 APDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 P V ++ + + RE + L VTID + +D+DDA+ + L + ++L Sbjct: 224 YPPKVKEQLEEVPNEISPKDYEGRELIQGLPTVTIDGSDAKDLDDAVSLEKLDNGNMELG 283 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 V IAD + ++ EG+ LDK A+ R + YL +PMLP +LS+++CSL R ++ Sbjct: 284 VHIADVSYYVREGTPLDKEARQRGTSVYLVDRVLPMLPPKLSNNICSLNPGVERLTMSAF 343 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 + L+ +G I N + I+S +L Y++V++ + + + + + +A + + I + Sbjct: 344 VELTEEGDI-ANYRLTPSVIKSNYRLTYEEVNELFDGSKEIEEKYPDVAWMLFEMKTISE 402 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + E R + + + + +L ++G+ + R A +++EE M+ AN A Sbjct: 403 KLRERRFDEGAIDFEFDEPVVVLDDQGKPESVEKRARGSAEKLIEEFMLLANRVVAEHHY 462 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRE-LDAQPTG 462 + IY VH D G ++ E + F K+ E D + Sbjct: 463 NLDMPFIYRVHEQPDDEKVSTFREFASKFGYYLPKPEGEEIYPIEFQKVLEEAKDTREER 522 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR 522 + + + R A + E HFGL + Y +TSPIR+Y D++ HR+++ +I + Sbjct: 523 AISTMMLRSMKQARYAAESLGHFGLSFQYYTHFTSPIRRYPDLVVHRIMREIITKKDLKE 582 Query: 523 --------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 +EI Q + R + AER+ D+ A +++ G D F + ++ Sbjct: 583 ARQKKLQSKLEEIAYQSSLREQEATEAERESVDYKMAEYMEQFVGDD--FPGIVSSVTSF 640 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRM 633 G+ + L N + + D +E + + Y++ D + V + + Sbjct: 641 GIFIELP-NLVEGLVHVSSMTD--DYYYFDEEKFALIGEQTRKTYRIGDEVKVKVVKTSK 697 Query: 634 ETRSIIARPV 643 E + V Sbjct: 698 EDCQVDFELV 707 >UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K401_AZOSB Length = 993 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 181/659 (27%), Positives = 295/659 (44%), Gaps = 25/659 (3%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGF-LEVDAQKSYFIPPPQMKKVMHG 57 M +D L+ + L + G V+ GFGF + D Q F+ P +M++V+HG Sbjct: 50 MERDGQLMRNRRDAFLLPDKADLIRGRVEGHPDGFGFLVRDDGQPDIFLGPKEMREVLHG 109 Query: 58 DRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR I I + R + E++E +R VG+V ++ + +VP++ L I Sbjct: 110 DRAIVRIAGQDRRGRPEGKVVEILERANSRVVGRVLNEHGVMIVVPENRRLAQDILVAP- 168 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + + G E+ P K + +T+ + D + + L +H+L E Sbjct: 169 --GGKKVQPGQVVTVELIEQPTKYAQPI-GRVTEVLGNYADPGMEIEIALRKHDLPFEFS 225 Query: 176 DGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + + RED+TAL VTID + +D DDA++ + +L+VA Sbjct: 226 SEAKADTRKLPTAVRKKDWAGREDITALPLVTIDGETAKDFDDAVYCERQGRG-FRLVVA 284 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ GS LD+ A R + Y P IPMLP +LS+ LCSL R + M Sbjct: 285 IADVSHYVEAGSALDRDAYERGNSVYFPRRVIPMLPEKLSNGLCSLNPQVERLCMVADMG 344 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQR 346 +S G I F+ A + S A+L Y +V+ L +N E + + L ++ + Sbjct: 345 ISMTGEI-KAYRFYPAVMFSHARLTYTKVAAALYDNDATALDEIGGLLPHLENLDKLFRV 403 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R + + + R I + G++ IV E R A+R++EE M+AAN+CA+ L Sbjct: 404 LLKARAKRGAIDFETTETRMIFDDNGKIERIVPETRNDAHRLIEECMLAANVCASDFLHK 463 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLD 465 +Y VH G P + L L GL + + + L ++ +P L Sbjct: 464 NDHPALYRVHEGPTPEKLEKLRTFLSEFGLPLGGGDEPRAKDYAALLDKVKDRPDAQLLQ 523 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-ATRPQ 524 + + R A S + HFGL EAY +TSPIR+Y D++ HR +KAV+ GE A Sbjct: 524 TVMLRSLRQAVYSPDNVGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLAGEHYAAGDW 583 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 D+I + + R A RDV WL +++DK G + F + + G+ V L Sbjct: 584 DDIGLHCSTTERRADEATRDVVAWLKCYYMQDKVGEE--FEGSVSAVVPFGLFVALDGIF 641 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L A + + + ++++D + V + V MET I R V Sbjct: 642 IEGLLHVSELGADYFHYD-EARHAMLGERTGKQFRLSDRVRVQLVRVDMETNKIDFRLV 699 >UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID=A4VQN3_PSEU5 Length = 833 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 174/691 (25%), Positives = 288/691 (41%), Gaps = 55/691 (7%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M +D L+ + + G V GFGFL D F+ P QM+ V G Sbjct: 66 MERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMRLVFDG 125 Query: 58 DRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR +A + + R E++ VG+ ++D +VPD+P ++ + Sbjct: 126 DRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVVPDNPKIQQEVLVTPG 185 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 R L + K G + ++ P + ++ + I + V L ++ P Sbjct: 186 RAL--DAKPGQFVEVKITHWPTQ-RFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHVWP 242 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD-----DKL 222 + V E + R DL L FVTID D DDA++ + Sbjct: 243 EAVLKEAARLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTGGF 302 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 +L VAIAD + ++ S LDK A +R + Y P +PMLP ELS+ LCSL + R + Sbjct: 303 RLYVAIADVSHYVKVDSALDKEAVVRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAM 362 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ-----PESEAIAEQV 337 C +TLS G + D +F+ A I S A+L Y++VS LE + E + + Sbjct: 363 VCEITLSKSGKMTD-YQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLPHL 421 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN 397 + L + + + RH + + + R + G ++ I R A++++EE M+ AN Sbjct: 422 KQLYSLYKVLLKARHTRGAIDFETQETRIVFGADRKIAAIKPTERNDAHKLIEECMLCAN 481 Query: 398 ICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV-DAEEVLTLDGFCKLRREL 456 + A L+ +Y VH + L A L GL + +E T + L ++ Sbjct: 482 VATAAFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEKI 541 Query: 457 DAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 +P + + + R S A S E HFGL EAYA +TSPIR+Y D++ HR +++VI Sbjct: 542 QGRPDFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSVI 601 Query: 516 KGETATRP---------------------QDEITVQMAERRRLNRMAERDVGDWLYARFL 554 + T +++ Q + R A RDV +WL F+ Sbjct: 602 RSRRDTPHVRREGAPSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVVNWLKCEFM 661 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ-ENGTVQIK 613 KD+ G F I ++ G+ V L D + + D + + Sbjct: 662 KDRVGE--TFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPG--DYYHFDPLHHRLSGER 717 Query: 614 GETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 +++ D ++V + V ++ R I +A Sbjct: 718 SGRSFRLGDSVEVRVMRVDLDERKIDFELIA 748 >UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5_PAESJ Length = 941 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 161/668 (24%), Positives = 269/668 (40%), Gaps = 43/668 (6%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHS 66 + + + G ++A KGF FL D + +I K M+GD + I S Sbjct: 56 RNERYGVPERMNLLRGKIQAHAKGFAFLLPDEKDHPDVYIHANDQKSAMNGDIALVRITS 115 Query: 67 E---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 + R E +V+ +T+ VG + +VPD + I +G Sbjct: 116 QSEGGGRMEGEVVRIVQRAVTQVVGTFESHEAFGFVVPDDKRINRDIFI--PKGEFQGAV 173 Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML 183 G V ++ +P +G + E+ + + +D + + +H L + D V E Sbjct: 174 TGQKVVVKITSYP-EGRSAAQGEIIEILGHKNDPGIDILSIIRKHQLPEGFSDEVMAEAE 232 Query: 184 DEG----------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 R DL VTID +D+DDA+ K L + L V IAD Sbjct: 233 AAPDSITEEEIVEQGRRDLRGEVIVTIDGEDAKDLDDAVHVKRLENGNYLLGVHIADVGY 292 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ E S LD+ A R + YL IPMLP LS+ +CSL R L+C M + Sbjct: 293 YVKERSALDQEAFRRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFDSKLK 352 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWL-----ENTGDWQPESEAIAEQVRLLAQICQRRG 348 + + F + I++K ++ Y V L E + + + + L+ ++ + Sbjct: 353 RVRH-DIFTSVIKTKERMTYTNVRKILMATEEEPETELKERYADLLDMFTLMEELAMKLR 411 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 + R + D + + I+ ++G+ +DIV R +A +I+EE M+AAN A Sbjct: 412 KKRMKRGAIDFDFQESKVIVDKEGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLR 471 Query: 409 GFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDA-QPTGFLDS 466 +Y +H D G V + L E+ + + + Sbjct: 472 VPFLYRIHEDPDQEKLLHFMQFASNFGYVVKGKGNSVHPRALQTLLEEIHGTKEETVIST 531 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---------KG 517 + R A+ E HFGL E Y+ +TSPIR+Y D++ HR+++ V+ + Sbjct: 532 VMLRSMKQAKYDAESLGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVLENGGALPEIRN 591 Query: 518 ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 E +I +ER R+ AERD F+ DK G + F I ++ GM Sbjct: 592 EALAARMPDIAQHSSERERVAVDAERDTDKLKKCEFMLDKVGEE--FDGIISSVTSFGMF 649 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMET 635 V L DN I L D+ E + + VY++ D + + +A+V M+ Sbjct: 650 VEL-DNTVEGLIRLSGL---TDDYYHFHELHMVLIGERTSKVYRIGDEVKIRVAQVNMDD 705 Query: 636 RSIIARPV 643 +I V Sbjct: 706 YTIDFEMV 713 >UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJU5_ACIFE Length = 823 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 154/653 (23%), Positives = 266/653 (40%), Gaps = 31/653 (4%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDAQ---KSYFIPPPQMKKVMHGDRIIAVIHSEK- 68 L + G + T KGF F+ + + FIP + M GD +IA + Sbjct: 62 YGLPAAMGLVVGRCQVTSKGFAFVIPEEKTEDGDLFIPASSLSGAMDGDTVIARVMQSGY 121 Query: 69 -ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 +R+ + ++ + VG + ++PD+ + I R R + ++ + Sbjct: 122 DDRQEGKIIRILNRAHHKLVGTFSKSGEFGFVIPDNKRVGRDIYVR--RKDFNGARDKEK 179 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--- 184 V E+ P + R+ ++ + + D + + ++L + P V Sbjct: 180 VVVEITTWPDE-RRNAEGKIVEILGKPGDIGLEILSIIKDNDLPTKFPAPVQVAAEKVEQ 238 Query: 185 -----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 E R D + +TID ++D+DDA++ + D L V IAD + ++ S Sbjct: 239 KIKKKEIQNRLDRRDWNIITIDGVDSKDLDDAVYVEKQGD-NYFLGVYIADVSYYVQPHS 297 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD+ A R + YL +PMLP ELS+ +CSL E R +AC M L + Sbjct: 298 VLDQEAYERGTSVYLVDRVLPMLPVELSNGICSLNEGEDRLTMACEMLLDGKTGRTLSFT 357 Query: 300 FFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 I + ++ Y V L + + + I + +A++ Q + R + Sbjct: 358 IAPCVINNHHRMNYPDVRAILVDQDEALREKYADIVPMLEDMARLQQVLHKKRERRGAIN 417 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 + P+ + +L ++ + IV R +A ++EE M+AAN A + IY VH Sbjct: 418 FELPEQKVLLDDQKHPVAIVKRERSVAEMLIEEFMLAANETVAGFMARHKRPFIYRVHDL 477 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEI 477 DP LA L+ G+ + EE + + ++ +P + + R A Sbjct: 478 PDPEKIQNLAKLMALFGVTLKVEEKMRPKDLQRALDKVAGKPEEKLVSTVALRSMRQAVY 537 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE--------ITV 529 TE HFGL Y +TSPIR+Y D++ HRLL+ + GE +R Q E + Sbjct: 538 QTENIGHFGLAAHFYTHFTSPIRRYPDLMVHRLLRRQLDGERLSRQQAEERTQRLSLVAS 597 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R R AER D A ++ G + F I +S G V L DNG + Sbjct: 598 HCSVRERAAIDAERQTVDLKMAEYMVQFVGKE--FTGTISGVSSFGFFVEL-DNGVEGLV 654 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 L+ + + Q + Y++ D +D+ + +V + R I Sbjct: 655 HVSSLNDDYYDYIEGQY-ALIGQHLGHRYRLGDQVDIQVLQVDVAERKIDFVL 706 >UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID=Q0K976_RALEH Length = 909 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 164/701 (23%), Positives = 290/701 (41%), Gaps = 65/701 (9%) Query: 1 MFQDNP--LLAQLKQQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHG 57 M +D L + + +L Q G V+ GFGFL D + F+P +++K MH Sbjct: 93 MERDGQIELNRKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHN 152 Query: 58 DRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR + + + R + E++E +G++ + L + P+ + I Sbjct: 153 DRAQVRVVGYDRRGRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPP- 211 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + + G E+ P + + + + + DD + + + ++ + Sbjct: 212 -KAQGKARVGQVVSVELIEFPDRYVQ-PVGRVVEVLGEIDDPGMEIEIAVRKYGVPHAFS 269 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD---KLQL 224 A E + R DL + VTID D DDA++ + + +L Sbjct: 270 PAAAQEASALPDEVRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRL 329 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 IVAIAD + ++ G+ LD A RA + Y P IPMLP +LS+ LCSL + R + C Sbjct: 330 IVAIADVSHYVRPGTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVDRLCMVC 389 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQI 343 ++A G + +F+ A + S A+L Y++V L G + + ++ L ++ Sbjct: 390 DAVITAKGEL-KGYQFYPAVMHSTARLTYNEVWSVLSNTKGPEAHKRGELVPHLQNLYEL 448 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 Q + R + D + + +G++ I+ R A+R++EE M+ AN+CAA Sbjct: 449 FQVLLKARRARGAIDFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADF 508 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG- 462 L +Y +H G L L+T GL + + + ++ ++ ++P Sbjct: 509 LERFKHPALYRIHAGPSEEKLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAP 568 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG----- 517 L + + R A S + HFGL EAYA +TSPIR+Y D++ HR +KAV+ Sbjct: 569 MLQTMLLRSMQQAVYSPDNIGHFGLSYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQP 628 Query: 518 -----------------------------------ETATRPQDEITVQMAERRRLNRMAE 542 DE+ + + R A Sbjct: 629 AFAHGTELNTAISPKARRLQAKDAEQKAELTAARARRNEAIWDELGLHCSANERRADEAS 688 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELV 602 RDV WL F++DK G+D +A + ++ G+ V+L + + L + + Sbjct: 689 RDVEAWLKCYFMRDKLGSD--YAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYD 746 Query: 603 CSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 N + Y++TD + V ++ V ++ R I R V Sbjct: 747 -EARNELRGERTGIRYRLTDRVRVQVSRVDLDARKIDFRLV 786 >UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RNR_SHIFL Length = 813 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 160/673 (23%), Positives = 277/673 (41%), Gaps = 37/673 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHG 57 M +D L+ + L + +G V G+GFL V+ + ++ QMK +HG Sbjct: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 Query: 58 DRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D+++A K R A ++ P ++ VG+ + +VPD L I Sbjct: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + + G V E+ + P + + ++ + + + + L H + P Sbjct: 182 Q--IMGARMGFVVVVELTQRPTRRTK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V ++ + R DL L VTID D DDA++ + +L VA Sbjct: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ + LD+ A+ R + Y P IPMLP LS+ LCSL R + C MT Sbjct: 299 IADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 +S+ G + +F+ A + S A+L Y +V L+ D + + + + + L + + Sbjct: 359 VSSKGRLT-GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + R + + + +FI + + I R A++++EE MI ANI AAR + Sbjct: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDS 466 ++ +H + ++L GL + + +L + +P L + Sbjct: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------- 519 + R A E HFGL L++YA +TSPIR+Y D+ HR +K ++ E Sbjct: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 Query: 520 -------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 + ++ + R A RDV DWL F+ D+ G F I ++ Sbjct: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN--VFKGVISSVT 655 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVTIAEV 631 G VRL D + L D Q + Y++ D ++V + V Sbjct: 656 GFGFFVRLDDLFIDGLVHVSSL--DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 Query: 632 RMETRSIIARPVA 644 M+ R I ++ Sbjct: 714 NMDERKIDFSLIS 726 >UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=A1AN74_PELPD Length = 777 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 162/673 (24%), Positives = 265/673 (39%), Gaps = 38/673 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M QD L+ L S G + + G+GF+ + FIP M+ MHG Sbjct: 44 MAQDGELVRFRGNSYALASAATSIRGKLSSHRDGYGFVTPQGGGEDIFIPQRHMRGAMHG 103 Query: 58 DRIIAVIHSEK---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 D + + + +VE ++R VG+ + ++P+ L I Sbjct: 104 DTVEVHAERSRMGGGKFEGRITSVVERGVSRVVGRYEETRRGAIVIPEETRLNLVIAIPP 163 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 ++G V E+ +P+ G R + + + + DD V + R +L Sbjct: 164 --KGRGLAQDGQQVVVELSSYPV-GGRPAEGNVVEVLGWPDDPEVEVQSAIRRFDLPHVF 220 Query: 175 PDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 E E R DL L VTID + D DDA+ + D +L V Sbjct: 221 APDTLAEAEAIPETVPAQELAGRVDLRPLATVTIDGETARDFDDAVSLRR-EGDNFRLWV 279 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 +IAD + ++ S LD+ A +R + Y P IPMLP LS+ +CSL R + M Sbjct: 280 SIADVSHYVRPDSPLDRDAYLRGTSVYFPDRCIPMLPERLSNGICSLNPGVERLTMTAEM 339 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQ 345 DG++ ++ F+ I S A+L Y QV + + + + + + ++ Sbjct: 340 LFDRDGSMLES-SFYPGIIASAARLTYTQVKRVIVDQDRETADSLGTVTPMLLEMKELAL 398 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 R + D P+ I+G G IV R +A++++EE M+AAN A + Sbjct: 399 ILMGMRRKRGSIDFDLPESEVIIGLTGLTEGIVRAERTLAHQLIEEFMLAANEAVALFIA 458 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV-LTLDGFCKLRRELDAQPTG-F 463 +K +Y +H DPA G +E + +L +P Sbjct: 459 EKGIPLLYRIHENPDPAKLINFQEFAFGFGYEFPLKEERVNPADLQRLLESAAGRPEERM 518 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---- 519 ++ + R A + E HFGL Y +TSPIR+Y D++ HR+LKA++ Sbjct: 519 INYALLRCMKQARYAAENLHHFGLASRCYCHFTSPIRRYPDLVVHRILKALLALAENRGS 578 Query: 520 ---------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 AT E+ ++R R+ AERD+ + A+F++ G + F I Sbjct: 579 KQAEKRLSLATHNLSEVGEHTSKRERVAMEAERDIVELKKAQFMQQHLGEE--FDGFITG 636 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 630 ++ G V L + + L V + V V ++ D V +A Sbjct: 637 VTGFGFFVELEELFVEGLVHVSTLDDDLYTFV-ENRHSLVGRNRGRVLRIGDRARVRVAS 695 Query: 631 VRMETRSIIARPV 643 V TR I V Sbjct: 696 VSPATRRIEFVLV 708 >UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms RepID=Q11XW5_CYTH3 Length = 750 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 157/673 (23%), Positives = 281/673 (41%), Gaps = 46/673 (6%) Query: 5 NPLLAQLKQQLHSQTP------RAEGVVKATEKGFGFLEVDAQK---SYFIPPPQMKKVM 55 +LA+ K L+S G V F ++ + +K +I +M + Sbjct: 65 EGILAKDKSGLYSNAGSSGGESLVTGRVDFVNARFAYVIPEGEKADNDIWISSNKMSGAL 124 Query: 56 HGDRIIAVIHSEKER-------ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD 108 GD + ++ + E E+VE T FVG+++ +VPD + Sbjct: 125 DGDIVRVAVYKKSGGGNKGTKSAEGEIVEIVERKRTSFVGRIEVSARHAFVVPDGRKMHV 184 Query: 109 AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARH 168 I + + K G+ + ++ P + ++S ++T+ + ++ LA Sbjct: 185 DIFI--PKEHINGAKTGEKVLVDITAWPTRDEKSPTGKVTEVLGMAGENETEMHAILAEF 242 Query: 169 NLEKEAPDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220 L E P+ V D E R D+ TID +D DDA+ K L + Sbjct: 243 GLPYEFPNQVIKAAQDITAETSEAEIKKRRDMRGTTTFTIDPEDAKDFDDAISFKYLDNG 302 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 ++ V IAD + ++ G LDK A RA + YL +PMLP LS++LCSLR NE + Sbjct: 303 NWEIGVHIADVSHYVQPGDTLDKEAYRRATSVYLVDRCVPMLPERLSNELCSLRPNEDKL 362 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL 340 + + AD + D F I S + Y+Q + +E + + +++ +L Sbjct: 363 TFSAIFEIDADAKVLDEW-FGRTIIHSTRRFSYEQAQEVIE------TQQGDLVKELTIL 415 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 + ++ R + + + +F L KG+ L +V + R+ A++++EE M+ AN Sbjct: 416 NTLAKKMRAQRFKEGAISFETVEVKFQLDAKGKPLAVVPKVRKDAHKLIEEFMLLANKRV 475 Query: 401 ARVLRDKLG------FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLR 453 A + + +Y H +P +LA K G V+ ++ + KL Sbjct: 476 AEFVFNLRKGKGTSNTMVYRTHDAPNPEKLASLATFAKRFGHKVELDDENAIAKNLNKLS 535 Query: 454 RELDAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK 512 E++ +P L S R S A S EP HFGL + Y+ +TSPIR+Y D++ HRLL+ Sbjct: 536 DEVEGKPEQNVLQSLAIRTMSKAIYSIEPDMHFGLAFKHYSHFTSPIRRYPDVMAHRLLQ 595 Query: 513 AVIKGETATRPQD--EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 + G + + E + + +L AER + F++ G + F + Sbjct: 596 HYLDGGKSADKEYYIEACEHSSAQEKLAAEAERSSIKFKQVEFMQSSIGKE--FEGIVSG 653 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 630 ++ GM V +V+ + + E+ V + + + + D + V + Sbjct: 654 VTEFGMFVEIVETKCEGMVRLADMDDDFYEVDTDNYR-IVGKRNKRMITLGDSVQVIVKS 712 Query: 631 VRMETRSIIARPV 643 +E R+I V Sbjct: 713 TNLERRTIDLELV 725 >UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms RepID=A6ED44_9SPHI Length = 709 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 144/658 (21%), Positives = 259/658 (39%), Gaps = 38/658 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHS 66 + K +L G V T G F+ D + K F+ ++ +HGD++ I++ Sbjct: 66 QKGKFKLKDLKTFIIGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYA 125 Query: 67 EK--ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 +K + E E++E T F+G ++ + ++ D + I + K Sbjct: 126 KKSGRKNEGEVVEIIERAKTDFIGVIKISDRFAFVIADDKKMMQDIFV--PLSDLNGAKN 183 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 ++ P +G ++ + + ++ LA++ + P V E Sbjct: 184 RQKVQVKITDWP-EGVKNPIGTVITILGEQGENNTEMNAILAQYGFPLQFPPEVEKEANA 242 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 DE R D TID A +D DDA+ K L + ++ V IAD ++ Sbjct: 243 IPEQITADEIKDRRDFRETVTFTIDPADAKDFDDAISFKKLDNGHYEVGVHIADVAHYVT 302 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 S LDK A RA + YL IPMLP LS+ +CSLR +E + A L I + Sbjct: 303 PNSALDKEAYGRATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFELDNKANIIN 362 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 F I S + Y++ + +EN +E++ L ++ + + + Sbjct: 363 EW-FGRTVIHSDRRFSYEEAQEVIENKTG------DFSEEILKLNELAYILRDKKFKNGA 415 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-----FG 411 + + + +F L E G+ L + + R+ A++++E+ M+ AN A + K Sbjct: 416 ISFESTEVKFKLDEDGKPLGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTF 475 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR--RELDAQPTGFLDSRIR 469 IY H + N A G ++ + + + L Sbjct: 476 IYRSHDSPNLENLGNFALFAARFGYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAI 535 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--TRPQDEI 527 R + A +T+ H+GL + Y +TSPIR+Y D++ HRLL A + E + + Sbjct: 536 RSMAKAVYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNKEKSADAEEYEIA 595 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 + + AER + A +L++ G + I ++ GM V L DN Sbjct: 596 ASHSSTMEKRAADAERASIKYKQAEYLEENIGN--LYKGIISGVTEWGMYVELADNKCEG 653 Query: 588 FIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 I L D+ E + + + Y++ D + V + +V + R I + Sbjct: 654 MIRLRDLS---DDFYVLDEKNYCIIGQRKKKTYQLGDEVQVKVKKVDLSKRQIDFSLI 708 >UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepID=RNR_VIBCH Length = 821 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 152/676 (22%), Positives = 275/676 (40%), Gaps = 41/676 (6%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDA----QKSYFIPPPQMKKV 54 M +D L+ + L + +G V + G G++ + + +P QM+ + Sbjct: 66 MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125 Query: 55 MHGDRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC 112 +HGD ++ ++ R+ ++E + VG+ + +VPD + I Sbjct: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILI 185 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 L + G+ V E+ + R ++ + + + + + H + Sbjct: 186 --PNDLRAGARMGNVVVIEITDRGTRN-RGMMGKVVEVLGENMAPGMETQIAIRTHQIPH 242 Query: 173 EAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 E P V ++ + R DL AL VTID D DDA++ +A +L Sbjct: 243 EWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRL 302 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 VAIAD + ++ + LDK A R + Y P +PMLP LS+ LCSL R + C Sbjct: 303 WVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 362 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 MT+S G + + + A + S A+L Y +V + LE + + +A+ + L ++ Sbjct: 363 EMTVSETGKL-SGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMY 421 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 Q R + + + +FI + ++ I R A++++EE MI ANI +A ++ Sbjct: 422 QVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLV 481 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGF 463 +Y VH L GL + + + L +++ +P Sbjct: 482 EKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKEL 541 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---- 519 + + + R A + + HFGL L+ YA +TSPIR+Y D++ HR +K +I + Sbjct: 542 IQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQ 601 Query: 520 -----------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 + D Q + R A R+V DWL +++D G + + Sbjct: 602 DRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEE--LEGVV 659 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVT 627 +++ G VRL + + L D V +Y++ D + V Sbjct: 660 ANVTSFGFFVRLTELHIDGLVHISTL--ANDYYHYDPIGQRLVGESFGAIYRLGDAVKVK 717 Query: 628 IAEVRMETRSIIARPV 643 + V ++ R I V Sbjct: 718 VLAVNLDDRQIDFELV 733 >UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria RepID=RNB_ENT38 Length = 644 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 555/643 (86%), Positives = 602/643 (93%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 M QDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDR+ Sbjct: 1 MLQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 AVIH++K+RE+AEPEEL+EPFLTRFVGKV K+DRL+IVPDHPLLKDAIPCRA R H Sbjct: 61 TAVIHTQKDRETAEPEELIEPFLTRFVGKVHKKDDRLSIVPDHPLLKDAIPCRADRNCEH 120 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 +FKEGDWAVA+MRRHPLKGDR FYA+LT +IT+ DDHFVPWWVTLARHNLEKEAP+GVAT Sbjct: 121 DFKEGDWAVAQMRRHPLKGDRGFYADLTHFITYSDDHFVPWWVTLARHNLEKEAPNGVAT 180 Query: 181 EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 EMLDEGL R DLTAL+FVTIDSAST+DMDDAL+ + D KL L VAIADPTAWIAEGSK Sbjct: 181 EMLDEGLERRDLTALNFVTIDSASTQDMDDALYVEEGADGKLHLTVAIADPTAWIAEGSK 240 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD +AK+RAFTNYLPGFNIPMLPRELSDDLCSLR N++RPVLACRMT++ADGTIED+IEF Sbjct: 241 LDDSAKVRAFTNYLPGFNIPMLPRELSDDLCSLRPNQIRPVLACRMTIAADGTIEDDIEF 300 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 FAATIESKAKL YD VS+WLE G+W+PESEAIA+Q+ LL ++C RGEWR HALVFKD Sbjct: 301 FAATIESKAKLAYDDVSNWLEGAGNWKPESEAIAQQITLLQRVCLSRGEWRKTHALVFKD 360 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 RPDYRF+LGEKGEVLDIVAEPRRIANRIVEE+MIAANICAARVLRDKLGFGIYNVH GFD Sbjct: 361 RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHTGFD 420 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE 480 PAN +ALAALLKTH +HVD +EVLTL+GFCKLRRELDAQP+GFLDSRIRRFQS+AEISTE Sbjct: 421 PANTEALAALLKTHDVHVDPQEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSYAEISTE 480 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM 540 PGPHFGLGLEAYATWTSPIRKYGDM+NHRLLKA++KGET RPQDE TVQMAERRRLNRM Sbjct: 481 PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIVKGETIARPQDEATVQMAERRRLNRM 540 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AERDVGDWLYARFL DKAGTDTRFAAEI+DISRGGMRVRLV+NGA+AFIPAPFLHAVRDE Sbjct: 541 AERDVGDWLYARFLSDKAGTDTRFAAEIIDISRGGMRVRLVENGAVAFIPAPFLHAVRDE 600 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 LVCSQENG+VQIKGETVYKVTDVIDV IAEVRMETRSIIARPV Sbjct: 601 LVCSQENGSVQIKGETVYKVTDVIDVNIAEVRMETRSIIARPV 643 >UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1V4B6_BURMS Length = 896 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 177/696 (25%), Positives = 293/696 (42%), Gaps = 61/696 (8%) Query: 1 MFQDNP--LLAQLKQQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHG 57 M +D L + QL + G V+ G+GF+ D Q F+P +M+KVMH Sbjct: 135 MERDGQIRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHN 194 Query: 58 DRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR++A I + + R E+ E R +G++ +N L + P+ + I Sbjct: 195 DRVLARIVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILVTQN 254 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + K G V E+ P + + + + + DD + + + ++ + E Sbjct: 255 ---AKKAKVGQVVVVELTDFPSRHSQPL-GRVCEVLGDIDDPGMEIEIAVRKYGVPHEFG 310 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD---KLQL 224 E + R DL + VTID D DDA++ + +L Sbjct: 311 AQALGEAAALPDKVRPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRL 370 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 IVAIAD + ++ GS LD A R+ + Y P IPMLP +LS+ LCSL R VLAC Sbjct: 371 IVAIADVSHYVQPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLAC 430 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQI 343 M ++A G I +F+ A I S A+L Y +V+ L G + ++ L + Sbjct: 431 DMIINARGDI-KAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELMPHLQHLYGV 489 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 + R + D + + +G++ I+ R A+R++EE M+AAN+CAA Sbjct: 490 YKALFVARQKRGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADF 549 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG- 462 L+ G+Y VH G P + L A L+ GL + + + L + +P Sbjct: 550 LKRNKHPGLYRVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQ 609 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR 522 L + R A S + HFGL +AYA +TSPIR+Y D++ HR + A++ G+ T Sbjct: 610 MLQPMLLRSMQQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTP 669 Query: 523 P-----------------------------------QDEITVQMAERRRLNRMAERDVGD 547 +E+ + + R A RDV Sbjct: 670 KSPEGVELNTALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEA 729 Query: 548 WLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN 607 WL F++DK G + + + ++ G+ V+L + L A + +N Sbjct: 730 WLKCYFMRDKLGEE--YGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYD-EVKN 786 Query: 608 GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + Y+++D + V ++ V ++ R I R V Sbjct: 787 ELRGERTGIRYRLSDRVRVQVSRVDLDARKIDFRLV 822 >UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_AMMDK Length = 715 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 170/668 (25%), Positives = 276/668 (41%), Gaps = 36/668 (5%) Query: 1 MFQDNPLLAQL--KQQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMH 56 M ++ + + L Q G ++ +G+ FL D + FIPP + MH Sbjct: 45 MEEEGLIYQTRAARYGLPEQFNLVVGRLECHPRGYAFLVPDREGEPDVFIPPGCLGGAMH 104 Query: 57 GDRIIAVIHSE--KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 DR+ + E ++ + VG + K + +VPD P L + Sbjct: 105 QDRVAVRLFPGSHGRTREGEVVRVLRRAHRQLVGTLYKKRRSVFVVPDDPRLTHQVVI-- 162 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 +G + + G+ V E+ +P + + + D + V R+ L Sbjct: 163 PKGKLNGARNGEKVVVELTTYPGPYT-PAEGRVVEVLGPEDAPGMDMLVLCRRYGLPDGF 221 Query: 175 PDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 P V E +E R DL VTID +D+DDA+ + L D +L V Sbjct: 222 PPEVEEEAENIPLTIRPEELAGRRDLREWLIVTIDGEDAKDLDDAVSLELLHDGTYRLGV 281 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ EGS LD+ A R + YLP IPMLP LS+ +CSL E R L+ M Sbjct: 282 HIADVSYYVREGSALDREAFQRGTSIYLPDRVIPMLPPRLSNGICSLNPEEDRLTLSVLM 341 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 + + G + + E F + I SKA+L Y V+D+L G + + L+ ++C Sbjct: 342 RVDSKGEVLE-YELFPSVIRSKARLTYRAVNDYLAGRGGVPAPLPGLGRMLELMQELCLC 400 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + + P+ + +L E+G +D+ R I +I+EE M+ AN AR Sbjct: 401 LRRRRLKQGAIDFNLPETKVVLDEEGRTVDVYPAERGIGEQIIEEFMLLANETVARHAAK 460 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLD 465 IY +H DP +L LL + G L F ++ + +P ++ Sbjct: 461 LQLPFIYRIHPQPDPEKVASLEELLASLGYQNTRLGTLEPARFQEVLEAVAGKPEERLVN 520 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA-VIKG------- 517 + + R A + E HFGL E Y +TSPIR+Y D+ HR+L+ V+KG Sbjct: 521 AVMLRSLKQARYAAERSEHFGLASEYYTHFTSPIRRYPDLFIHRVLRETVLKGAGLSPRR 580 Query: 518 -ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + E Q +ER RL ER+ D F+ DK G + +A I ++ G+ Sbjct: 581 RARLEKLAQEAAAQSSERERLAMEVEREAVDIKKVAFMVDKVGRE--YAGFISGVTNWGL 638 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQEN--GTVQIKGETVYKVTDVIDVTIAEVRME 634 V L +N + L D+ E V +++ D + V + + Sbjct: 639 YVML-ENTVEGLVHVRHL---TDDFYFYDEKNYALVGRHTGKRWRLGDPVRVRVLRASVP 694 Query: 635 TRSIIARP 642 + + Sbjct: 695 EKLVEFSL 702 >UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID=RNR_VIBPA Length = 835 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 155/676 (22%), Positives = 274/676 (40%), Gaps = 41/676 (6%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDA----QKSYFIPPPQMKKV 54 M +D L+ + L + +G V + G G++ + +P QMK + Sbjct: 66 MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDDDILLPHHQMKNI 125 Query: 55 MHGDRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC 112 +HGD ++ S++ R ++E ++ VG+ + +VPD + I Sbjct: 126 IHGDFVLVQPTDNSKRGRREGRLVRVLEERNSQIVGRFFLEYGYSYVVPDDSRISQDILI 185 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 + G+ V E+ + R ++ + + + + + H + Sbjct: 186 --PNEHKAGARMGNVVVIEITDRGSR-SRGMMGKVVEVLGENMAPGMETQIAIRTHQIPY 242 Query: 173 EAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 E P+ V ++ + + R DL L VTID D DDA+F + D +L Sbjct: 243 EWPEAVEKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRL 302 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 VAIAD + ++ S LDK A R + Y P +PMLP LS+ LCSL R + C Sbjct: 303 WVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 362 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 MT+S G + + + + A + S A+L Y +VS LE + + + + + L + Sbjct: 363 EMTISESGKL-SSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAMY 421 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + E R + + + +FI + ++ I R A++I+EE MI ANI +A ++ Sbjct: 422 KVLKEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASLV 481 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGF 463 +Y +H L GL + + + L R++ + Sbjct: 482 EKAKEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQEL 541 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---- 519 + + + R A + + HFGL L+ YA +TSPIR+Y D++ HR +K +I E Sbjct: 542 IQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQ 601 Query: 520 -----------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 + D Q + R A R+V DWL +++D G + I Sbjct: 602 DRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDE--LEGVI 659 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVT 627 +++ G VRL D + L D + +Y++ D + V Sbjct: 660 ANVTSFGFFVRLTDLHIDGLVHISTL--ANDYYQFDPIGQRLIGESFGNIYRLGDAVKVK 717 Query: 628 IAEVRMETRSIIARPV 643 + V ++ + I V Sbjct: 718 VLAVNLDDKQIDFELV 733 >UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ2_PEDHD Length = 709 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 144/657 (21%), Positives = 259/657 (39%), Gaps = 38/657 (5%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSE 67 + K +L G V T G F+ D + K F+ ++ +HGD++ I+++ Sbjct: 67 KGKFRLKDLKTFITGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAK 126 Query: 68 K--ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 K + E E++E T F+G ++ + D + I + K G Sbjct: 127 KSGRKNEGEVVEIIERSKTDFIGVIRISERYAFVNVDDRKMLHDIFV--PLNDLNGAKNG 184 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--- 182 + P +G ++ ++ + ++ LA++ P V E Sbjct: 185 QKVQVSITEWP-EGVKNPIGKIINILGEQGENNTEMNAILAQYGFPLSFPAEVELEANAI 243 Query: 183 -----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 E R+D TID A +D DDA+ K L + ++ V IAD + ++ Sbjct: 244 PEQVSAAEIKGRKDFRNTTTFTIDPADAKDFDDAISFKTLENGNYEIGVHIADVSHYVKP 303 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S LDK A RA + YL IPMLP LS+ +CSLR NE + A L + + Sbjct: 304 NSSLDKEAYARATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFELDEKANLVNE 363 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 F I S + Y++ + +EN A ++ L ++ + + + + Sbjct: 364 W-FGRTVIHSDRRFSYEEAQEVIENKAG------DYAAEILKLNELAYILRDKKFKNGAI 416 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-----FGI 412 + + +F L E G+ + + + R+ A++++E+ M+ AN A + K + Sbjct: 417 SFESTEVKFKLDETGKPIGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFV 476 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR--RELDAQPTGFLDSRIRR 470 Y H + N A G ++ + + + L R Sbjct: 477 YRSHDSPNLENLGNFALFAARFGYKINMKSDKEIAKSLNYLMEDVEGKKEQNVLTQLAIR 536 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--TRPQDEIT 528 + A +T+ H+GL + Y +TSPIR+Y D++ HRLL A + E + + Sbjct: 537 SMAKAIYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNNEKSANEEEYEIAA 596 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + + AER + A +L++ G FA I ++ GM V L +N Sbjct: 597 SHSSAMEKRAADAERASIKYKQAEYLEENVGN--IFAGIISGVTEWGMYVELTENKCEGM 654 Query: 589 IPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 I L + D+ E V + + Y++ D + V + +V + R I + Sbjct: 655 IR---LRDITDDFYVLDEKNYCIVGQRKQKKYQLGDEVQVKVKKVDLAKRQIDFTLI 708 >UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V602_9FIRM Length = 898 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 160/671 (23%), Positives = 262/671 (39%), Gaps = 38/671 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVD-----AQKSYFIPPPQMKK 53 + D ++ L S+ G + + KGFGF+ D + F+P M Sbjct: 51 LETDGAVIRNRSGLYGLPSRMNLVVGRLSMSPKGFGFIIPDVRETEEETDVFVPGSAMGT 110 Query: 54 VMHGDRIIAVIHSE---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI 110 MHGDR++A + E ++E T VG + + PD + + Sbjct: 111 AMHGDRVVARVTPSEQPGRAREGEIIRILERVNTHIVGTFERSKAFGFVTPDSTKIGRDV 170 Query: 111 PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL 170 + K G V E+ + P + RS + + + D V + ++L Sbjct: 171 FV--LKKDFGGAKTGSKVVVEITKWP-EQRRSAEGRVVEVLGKTGDPGVDVLAVMRAYDL 227 Query: 171 EKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKL 222 +++ P VA +E R D VTID T+D+DD ++A D Sbjct: 228 DEKFPPDVAEAAARCPKDPLPEEYAGRRDRRDFPIVTIDGEDTKDIDDGVYA-YEKDGVF 286 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 L V IAD + ++ G LD+ A R + YL IPMLP+ELS+ +CSL R + Sbjct: 287 FLGVYIADVSHYVRAGEPLDREAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSM 346 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ 342 AC M + DG + N E I +L Y V+ L + ++ I + L + Sbjct: 347 ACEMEIGMDGEVR-NYEIVPCVIHVARRLTYTLVNKVLAGEEPFVSDNGDIRPMLETLRR 405 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 + + RH + + P+ + L G + + I I+EE M+AAN AR Sbjct: 406 LREVLRAKRHRRGSIDFELPEVKVKLDADGHPVALEKRTGSIGESIIEECMLAANETVAR 465 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL--TLDGFCKLRRELDAQP 460 + K +Y VH + L +LL GL + +E ++ + QP Sbjct: 466 HMELKEEPFVYRVHETPAAEKIERLQSLLAALGLRLHVDEDGKVRPSDIQQVLDRVKGQP 525 Query: 461 TGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK------- 512 + + R A ST HFGL Y +TSPIR+Y D++ HRLL+ Sbjct: 526 EERIIGAVALRSMQQARYSTASLGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGH 585 Query: 513 -AVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 A K E E + R R+ AER+ D ++ G + I + Sbjct: 586 IAAEKRERLRALLPEAAEHSSARERIAIEAERETTDMKKIEYMAQFVGE--TYEGVISGV 643 Query: 572 SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 + G+ V L +NG + + + V + T Y++ D + + I Sbjct: 644 TAFGIFVEL-ENGVEGLVHVSTM-VNDYYSYIEDQYAMVGERTGTRYRLGDTVTIIITRA 701 Query: 632 RMETRSIIARP 642 ++ R++ Sbjct: 702 DVQARTLDFVL 712 >UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR_HAEIN Length = 782 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 165/672 (24%), Positives = 275/672 (40%), Gaps = 38/672 (5%) Query: 1 MFQDNPLL--AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHG 57 M D L+ + + L + +G V +GFGFL+VD +K FIP QM++VMHG Sbjct: 70 MENDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDGKKDDLFIPNHQMQRVMHG 129 Query: 58 DRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D ++A + R ++E + VG+ +N +VPD + I Sbjct: 130 DFVLAQPAGLDRRGRREVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRIGRDILV--P 187 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + + G V E++ ++ +T+ + + + L H++ + P Sbjct: 188 NEHRNGARMGQVVVVELQERSASFNQPI-GVITEILGDNMAKGMEVEIALRNHDILHKFP 246 Query: 176 DGVATE--------MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V + R DL L VTID D DDA++ + +L VA Sbjct: 247 SAVEKYVKKFTEEVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVA 305 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ S LD A R + Y P +PMLP LS+ LCSL R + C M Sbjct: 306 IADVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQ 365 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 +SA G + D F+ A + S A+L Y +V+ LE + + + + L ++ Q Sbjct: 366 ISAKGKLTD-YRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQAL 424 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 RH + + + +FI G + I R A +I+EE M ANI AA + Sbjct: 425 LSARHQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANFMEKH 484 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDS 466 +Y +H + L GL ++ T + L ++ +P + + Sbjct: 485 KEPALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQT 544 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------- 519 + R S A + HFGL LE YA +TSPIR+Y D+ HR +K ++ E Sbjct: 545 MLLRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTT 604 Query: 520 -------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 + D + + R A R+V DWL +++D G + F+ I ++ Sbjct: 605 DTGGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGE--FSGVISSVT 662 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS-QENGTVQIKGETVYKVTDVIDVTIAEV 631 G+ VRL D + L D + + Y++ D + + + V Sbjct: 663 GFGLFVRLDDLFIDGLVHISTLE--NDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAV 720 Query: 632 RMETRSIIARPV 643 +E + + + Sbjct: 721 HLENKMVDFSLI 732 >UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteria RepID=B5CPU6_9FIRM Length = 749 Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 148/655 (22%), Positives = 269/655 (41%), Gaps = 28/655 (4%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIH- 65 L++ + Q R G +A +GFGF+ V+ ++ FIP + GD + +I Sbjct: 104 LSKRGKYSKGQAKRIMGTFQANIRGFGFVMVEGQEEDIFIPAENVNGAFQGDEVECIITG 163 Query: 66 -SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R+ + ++ +T+ VG + + PD+ I A + L+ Sbjct: 164 SPSGRRQEGKIVGIISHQVTKVVGLYEKSKSFGFVRPDNQRFLKDIYIPAGKELH--AMT 221 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 G V E+ + + + ++ + + +D + ++ E P+ V + Sbjct: 222 GHKVVVELTSYGGEHMK-PEGKIIEILGHVNDPGTDILSIVKDFDIPTEFPEKVLNQAVR 280 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + R DL VTID +D+DDA+ + + +L V IAD T ++ Sbjct: 281 VGKEVSEADMAGRMDLRDWQMVTIDGEDAKDLDDAVSVV-MDGENYRLGVHIADVTNYVQ 339 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S LD A R + YL IPMLP+ LS+ +CSL A E R L+C MT++ +G + D Sbjct: 340 ERSALDWEALKRGTSVYLADRVIPMLPQTLSNGICSLNAGENRLTLSCIMTVTPEGEVVD 399 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 + + I ++ Y+ V+ L + + + ++ E R Sbjct: 400 H-QIAETVICVDKRMSYNGVAKVLAGDAEALEADREFVPMILRMKELSDIIRERRAKRGS 458 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + D P+ + IL EKG ++I R A +I+E+ M+ AN A + +Y H Sbjct: 459 IDFDFPETKIILDEKGRPVEIKPYDRNDATKIIEDFMLLANETVAEEYFWREIPFLYRTH 518 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFA 475 D L + G ++ + KL +++ P L SR+ R A Sbjct: 519 DVPDEEKIRKLGTFINNFGYNLHVRNEVRPKEIQKLLCKVEGTPEEPLISRLALRSMKQA 578 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-------EIT 528 + +TE HFGL + Y +TSPIR+Y D+ HR++K ++G + E+ Sbjct: 579 KYTTENTGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKENLRGRLTGERMEHYRKILTEVA 638 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 Q ++R R +ER+V A +++ G + + I +++ G+ V L N Sbjct: 639 SQCSQRERTAEESEREVVKLKKAEYMQAHIGGE--YEGVISGVTKWGVYVELP-NTIEGL 695 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 I + + + V +K+ + + + + R++ V Sbjct: 696 IHVADMRDDHYNFI-EETYEMVGEHTGKTWKLGQKVQIRVTDADRLQRTVNFEFV 749 >UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH Length = 793 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 155/668 (23%), Positives = 272/668 (40%), Gaps = 34/668 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMH 56 + ++ K L + +G +A E+GFGF+ + ++ FIPP ++K M+ Sbjct: 49 LEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMN 108 Query: 57 GDRIIAVIHSEKERE--SAEPEELVEPFLTRFVGKVQGK-NDRLAIVPDHPLLKDAIPCR 113 GD + A I K +++VE T+ VG ++PD L + Sbjct: 109 GDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEID 168 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 GL +G + E+ + R + I +D V + +H + Sbjct: 169 LEDGLKP--VDGHKVIVELTEYATGHAR-ARGVVKSIIGHRNDPGVDILSIIHKHGISIG 225 Query: 174 APDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 P+ V ++ + R DL +TID A +D+DDA+ LP+ +L Sbjct: 226 FPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLG 285 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 V IAD T ++ EGS LD A+ R + YL IPMLP +LS+ +CSL R ++C Sbjct: 286 VHIADVTHYVTEGSPLDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCE 345 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQIC 344 M + +G + ++ E F + I++ ++ Y V+D L EN + + I + + + Sbjct: 346 MEIDEEGHVVNH-EIFESIIKTTERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLA 404 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + R + D + R ++ E G +V R ++EE M+AAN A Sbjct: 405 EILRRKREKRGAIDFDFKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHF 464 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTG- 462 IY +H + GL V + ++ E+ +P Sbjct: 465 HWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEM 524 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG----- 517 + + + R A+ T HFGL + Y +TSPIR+Y D+I HRL++ + Sbjct: 525 VVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRP 584 Query: 518 ---ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 E EI ++ R AER+ + F+ DK G RF I ++ Sbjct: 585 ETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGE--RFIGIISSVTNF 642 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 G+ + L + + + +Q + + +Y++ D ++V + +V ++ Sbjct: 643 GLFIELP-TTIEGLVHVSAMKGDYFKFHQNQ-LAMIGERTGQIYRIGDEVEVEVTKVDVD 700 Query: 635 TRSIIARP 642 R I Sbjct: 701 AREIDFAL 708 >UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR Length = 818 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 160/662 (24%), Positives = 289/662 (43%), Gaps = 29/662 (4%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHG 57 M +D +L + L + +G V GFGF++ + F+ +M KV HG Sbjct: 100 MVRDGQILRNRRGAFGLIQKMDLIKGKVIGHPGGFGFVQPEEGGGDLFLGDREMHKVFHG 159 Query: 58 DRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D++IA + K R E++E +G++ ++ + P++ + I Sbjct: 160 DKVIASVIGVDRKGRREGMIVEIIEHANQTILGRLHMEDGLGWVQPNNNRIAQDIFIPQ- 218 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + +EG + E+ P K S ++ + + + + +++ E P Sbjct: 219 -DGLLDAEEGQIVMVEVIHQPTKRS-SAIGKIIEVVGDYLAPGMEIDSAIHAYDIPNEWP 276 Query: 176 DGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + ++ ++ R+DL +L VTID A ++D DDA+FAK + +L+VA Sbjct: 277 QELLDQLEAIPDEVTQEDKEGRKDLRSLPLVTIDGADSKDFDDAVFAKRRKNG-WRLVVA 335 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ EG+ LDK A R + Y P +PMLP +LS+DLCSL N R + C M+ Sbjct: 336 IADVSHYVKEGTPLDKEAYERGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVCDMS 395 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQR 346 + DG + + +F+ A + SKA+L YDQV + L + + + + + V L + + Sbjct: 396 IDNDGKL-ERTQFYDAVMNSKARLTYDQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEI 454 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D + R + E ++ IV R A++++EE M+ AN+ AR L+ Sbjct: 455 LKGARSERGALEFDTTETRIVFDEHRKIEKIVPVVRNEAHKLIEECMLMANVATARYLKW 514 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLD 465 +Y VH L L GL ++ + + + + + QP + Sbjct: 515 HKIPMLYRVHEKPSEERLKNLRTFLGDFGLTLEGGDEPDANDYATITEAVKGQPHEHLVG 574 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET------ 519 + + R + A + HFGL E YA +TSPIR+Y D++ HR ++ + Sbjct: 575 TVLLRSMNQAVYQPDNLGHFGLNYEYYAHFTSPIRRYPDLLIHRAIRFAWTKQDVSKFKY 634 Query: 520 ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 + + + + R A RD +L FL + G + + A + + G+ V Sbjct: 635 SEKDMKALGEHCSGTERRADEATRDAVTFLKCEFLSHRLGEE--YDAVVTAATNFGLFVE 692 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 L + L + + + VY++ D + V +A+V ++ R I Sbjct: 693 LEPLYVEGLVHITELGEDYFHYD-ASRHCLKGERTGKVYRLGDKLRVQVAQVNLDDRKID 751 Query: 640 AR 641 R Sbjct: 752 LR 753 >UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE Length = 705 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 172/640 (26%), Positives = 282/640 (44%), Gaps = 23/640 (3%) Query: 19 TPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEEL 78 G V A GFGFLEV+ K +IPP +M KV HGD + A + K ++ ++ Sbjct: 65 EEVVTGTVIAYPGGFGFLEVEGGKDIYIPPFEMVKVFHGDVVKAKVTEFKGKKEVRIIKV 124 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 ++ V KV ++++ +VP I ++ + KEG+ V ++ + P K Sbjct: 125 LKRAKKDIVAKVVFEDEQCYVVPLDENAHHRILL--SKKDCQKLKEGEVVVLKITQFPTK 182 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEG--------LVRE 190 ++ + + + F+ V + ++NL P+ V E+ R Sbjct: 183 KS-PARGKVIEVLGNPKEKFIAIDVIIRKYNLPTSYPEKVIKEVEAIPEEIPEEEIKRRR 241 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL TID D DDA+ + P+ +L V IAD + ++ EG++ DK A R F Sbjct: 242 DLREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKRGF 301 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 T Y P + MLP +LS LCSLR NE + M G + + + + I SKA+ Sbjct: 302 TYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNL-KAYDIYESVIRSKAR 360 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 L Y++ + + + + E +R++ + + R + D P+ I+ E Sbjct: 361 LTYNEALALIVGDPALEKKFPNLVEPLRMMETLYRILSRKRWEMGSIDFDLPEAEVIVDE 420 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 GE I R +A+RI+E MI+AN A L +Y VH D + L + Sbjct: 421 YGEPTAIYPYERHVAHRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEKVENLLEI 480 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGL 489 L+ G V T F K+ + + +P + R + A+ S HFGL L Sbjct: 481 LEGLGYKVKRPHEYTPKFFQKIIEDFEGRPEENLVRFLTLRAMARAKYSPHNVGHFGLAL 540 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-----QDEITVQMAERRRLNRMAERD 544 E YA +TSPIR+Y D+I HRLLK ++GE +E ++++ R+ AE + Sbjct: 541 EHYAHFTSPIRRYPDIIVHRLLKKALRGEEIDYEKTLAYLEEAGNHLSKQERIADEAEME 600 Query: 545 VGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS 604 D+L AR++K + G + F I + G V L +N + L DE V Sbjct: 601 AIDYLKARYMKGRIGEE--FIGIITGVVAFGFFVELEENLVEGLVKINTLTD--DEYVFD 656 Query: 605 Q-ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + V ++ V+++ D + V V E + + Sbjct: 657 EPAHRLVGVRTGKVFRLGDHVKVRCIAVDEERARVEFELI 696 >UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A2L6_PELCD Length = 720 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 162/662 (24%), Positives = 285/662 (43%), Gaps = 29/662 (4%) Query: 2 FQDNPLLAQLKQQL---HSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMH 56 D L+ ++++ L + G V +G+GF+ + Q FIP M++VM Sbjct: 46 LADEGLVRRVRKGLFSLPRSSEMVVGKVSVHRQGYGFVIPEAAGQADVFIPARYMREVMD 105 Query: 57 GDRIIAVI-HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 GDR+ + S + ++ VG + + ++P P L I + Sbjct: 106 GDRVAVRVQRSSRGGYEGRVLRVLSRAHQTIVGTYRPGHGYGMVLPSDPALSHGIMLLSP 165 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + GD V + ++P + + + + D V + NL +E Sbjct: 166 --APGDAHAGDLVVVSIAQYPGR-REPPRGVMVEVLGDPADPQVEILAAAYKFNLPREFS 222 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + ++ REDL + FVTID + +D DDA+ P ++L VA Sbjct: 223 TATLEQARSIAPVVREEDLAGREDLRSTLFVTIDGETAKDFDDAVAVSREPGGCMRLWVA 282 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD ++A S +D+ AK R + Y PG +PMLP LS+ +CSL R VL M Sbjct: 283 IADVGHYVAPDSPIDRDAKERGTSVYFPGSCLPMLPEALSNGICSLNPGVDRLVLTAEML 342 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQVRLLAQICQR 346 G + ++ FF A I SKA+L Y +V+D L P S+ + Q+ ++++ R Sbjct: 343 FDKQGVMLES-RFFHAVICSKARLTYREVADVLAAGAIHNPALSDPLISQLHHMSELASR 401 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D P+ +L +G I+ R +A+R++EE M+AAN A+ L D Sbjct: 402 LQAMRFRRGSLDFDLPEPEIVLDLQGRPDQILRAERTVAHRLIEEFMLAANEAVAKFLSD 461 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDAQPTG-FL 464 + +Y +H + A L + + ++ ++ + + +P + Sbjct: 462 RNIPLLYRIHESPEVEKLFAFQTFLAHLNIGLVVTDDSVSPTVLQGVLETVRDRPEERMV 521 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---AT 521 + + R A S++ HFGL + Y +TSPIR+Y D++ HR+L + AT Sbjct: 522 NQFLLRSMKQARYSSDNLGHFGLASDCYCHFTSPIRRYPDLVVHRILSRALSTSKRSSAT 581 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 +E+ +++ R AERD+ +F+ DK G F A + D+ G+ V L Sbjct: 582 VNLEELGDLTSQKERRAMEAERDIVALRRCQFMADKVG--QVFDACVADVQPFGIFVELK 639 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 D + L D +E + V + ++++ +V+ V + +V +E R + Sbjct: 640 DVFVEGLVHVATLTD--DYYEFDEELHRLVGQRRRKIFRIGEVVTVQLVKVNLERRELDF 697 Query: 641 RP 642 Sbjct: 698 EL 699 >UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFK4_9NEIS Length = 964 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 162/661 (24%), Positives = 282/661 (42%), Gaps = 29/661 (4%) Query: 1 MFQDNPLLAQLKQQL--HSQTPRAEGVVKATEKGFGF---LEVDAQKSYFIPPPQMKKVM 55 M +D +L + + + + V+ + GFGF L + + Q + VM Sbjct: 83 MARDGQILINRRNLVCAAEKLEIVKCRVEMHKDGFGFAVPLIPTGEGDLVLYERQTRGVM 142 Query: 56 HGDRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 +GD + + R + +++E T VG+ + + P+ L + Sbjct: 143 NGDIVTVRPLGLDRRGRREGQILDIIERAQTSIVGRFYLERGIAVLDPEDKRLTQNVILE 202 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 EG VAE+ +P + R A +T+ + D + + L +H L E Sbjct: 203 PDSVAQFAPGEGQVVVAEITAYP-ENHRPAVARITEVLGDYADSGMEIEIALRKHKLPHE 261 Query: 174 APDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 G + R DL L VTID ++ D DDA+FA+ + +L+ Sbjct: 262 FSAGCLKAAAKIPEKVRASDRKNRVDLRDLPLVTIDGETSRDFDDAVFAEKIGR-NYRLV 320 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 VAIAD + ++ +D+ A+ RA + Y P IPMLP LS+ +CSL + R + C Sbjct: 321 VAIADVSHYVKPDDAIDQDAQERATSVYFPRRVIPMLPENLSNGICSLNPDVERLCMVCD 380 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 + ++ G I + F+ A ++S +L Y+QV +W+ +EQ+ L ++ + Sbjct: 381 IEITFAGNI-KSYRFYPAVMKSHGRLTYNQVWEWISQKTQ-----NPYSEQLNTLYKLFK 434 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + RH + + + + + + G++ I+ R A++++EE M+AAN+CAA L Sbjct: 435 ILQKKRHARGAMEFETSETQMLFNDNGKIDRIIPVVRNDAHKLIEECMLAANVCAADFLL 494 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFL 464 +Y H G P AL L GL + + T + L ++ + L Sbjct: 495 KNKHPALYRNHAGPTPEKLAALREQLGLLGLKLGGGDNPTPKDYAALADQIAERDDRELL 554 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + + R A+ HFGL E Y +TSPIR+Y D++ HR +KAV+ G Sbjct: 555 QTMLLRSMQQAQYEPHNAGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLAGTQYQADW 614 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 + + R A RDV +WL +++DK G FA +I ++ G+ V L D Sbjct: 615 QALGAHSSHCERRADDASRDVENWLKTYYMRDKVGE--VFAGKISGMANFGIFVTLDDIH 672 Query: 585 AIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L D E + + +K+ D + + +A ++T I V Sbjct: 673 IEGMVHVSDLG--EDYFNYHPETLSMIGERSGVQFKMGDRVVIKVARADLDTSKIDLVLV 730 Query: 644 A 644 + Sbjct: 731 S 731 >UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX9_9FIRM Length = 766 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 161/718 (22%), Positives = 266/718 (37%), Gaps = 86/718 (11%) Query: 1 MFQDNPLLAQLKQQLHSQTPR-------AEGVVKATEKGFGFLEVDA-QKSYFIPPPQMK 52 M N L+A+ + + + G+ KGFGF+ V+ ++ FIP + Sbjct: 45 MEVLNALVAEGRIGVSKKGKYGKAETFSVNGIFSGHPKGFGFVTVEGMEQDVFIPEDKTG 104 Query: 53 KVMHGDRIIAVIHSEKER-------------ESAEPEELVEPFLTRFVGKVQGKNDRLAI 99 +HGDR+ V+ + ++E VG Q + + Sbjct: 105 AALHGDRVQIVVEHDSRMSGSRSGMGSGGRRAEGAVIRVLEHANQEIVGYYQKNKNFGFV 164 Query: 100 VPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFV 159 +PD+ L I G + G V ++ + + +T+ I +D Sbjct: 165 IPDNQKLAKDIFIPQ--GCDMGAVTGHKVVVKITDFGSEKHK-PEGRVTEIIGHVNDPGT 221 Query: 160 PWWVTLARHNLEKEAPDGVATEMLD----------------------------------- 184 + + L + P V E+ D Sbjct: 222 DILSIVRAYGLPEAFPQEVMEEIEDIPEDVTVPGQPYVPGQTDIPGQPAKPGSPYGISDL 281 Query: 185 --------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 E R DL L VTID +D+DDA+ L V IAD + ++ Sbjct: 282 TSHDGWGGELSGRLDLRGLQTVTIDGEDAKDLDDAVTICRDNQGHYILGVHIADVSHYVK 341 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 EGS LD+ A R+ + YL IPMLP +LS+ +CSL A R L+C M + GT+ D Sbjct: 342 EGSPLDREAFKRSTSVYLVDRVIPMLPHKLSNGICSLNAGTDRLALSCIMEVDGQGTVLD 401 Query: 297 NIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + I ++ Y V+ + + E E + ++ E R Sbjct: 402 H-RIAETVIHVDRRMTYTAVNAIVTDRDEAVMAEYEDFVPMFDCMKELADILRESRRKRG 460 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + D P+ + +L +G+ L+I R A RI+E+ M+ AN A + +Y Sbjct: 461 AIDFDFPESKIVLDGQGKPLEIKPYERNAATRIIEDFMLLANETVAEDYYWQSIPFLYRS 520 Query: 416 HMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQPTGFLDSRI-RRFQS 473 H DP L + G + + + KL +++ P L SR+ R Sbjct: 521 HDNPDPEKMKQLGTFINNFGYFIKMQHGEIHPKELQKLLDKIEGTPEEALLSRLTLRSMK 580 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-------QDE 526 A+ +T+ HFGL Y +TSPIR+Y D+ HR++K +KG + + E Sbjct: 581 QAKYTTQCSGHFGLATRYYTHFTSPIRRYPDLQIHRIIKETLKGGLSDKRAGHYEKILPE 640 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + VQ + R AER+ ++ G D F I ++ G+ V L N Sbjct: 641 VAVQTSALERRADEAERETDKLKKCEYMSRFIGQD--FDGAISGVTNWGLYVELP-NTVE 697 Query: 587 AFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + L D+ E + + YK+ I VT++ R++ Sbjct: 698 GLVRMSDL---DDDYYIFDEQHYELIGEMTKKTYKLGQPIRVTVSSTDRLLRTVDFIL 752 >UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_ALIAD Length = 903 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 152/672 (22%), Positives = 267/672 (39%), Gaps = 37/672 (5%) Query: 1 MFQDNPLLAQL--KQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMH 56 M L+ + L Q G ++ +G+GF+ + + +I + M Sbjct: 45 MEDAGDLVRTKNNRYALPEQMNFIAGRLQLKARGYGFVIPENEAEADIYILQTALNGAMS 104 Query: 57 GDRIIAVIHSEKER-----ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIP 111 GDR++ + E+ + E +++E R VG++ + P + + Sbjct: 105 GDRVLVRLREERGKGAQAHREGEIVKILERGNDRIVGQIAIYAHHAFVTPLDKRFPEDVF 164 Query: 112 CRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE 171 + +G V E+ +P + + + + D+ V + ++NL Sbjct: 165 V--PKDAVGNAHDGQVVVVELTSYPT-ATHGPVGRVVEVLGYPDEPGVDILAIVRKYNLP 221 Query: 172 KEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQ 223 + P+ V + E R+D VTID +D+DDA+ K LP+ + Sbjct: 222 EAFPEDVLADAERIPLEIDPAEIARRKDFRGETIVTIDGDDAKDLDDAVHVKRLPNGHYE 281 Query: 224 LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA 283 L V IAD ++ E S LDK A R + YL IPMLP LS+++CSL R ++ Sbjct: 282 LGVHIADVGYYVKENSPLDKEAFRRGTSVYLVDRVIPMLPPRLSNNICSLNPKVDRLTMS 341 Query: 284 CRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQ 342 C M + G + + E + I + ++ Y+ V LE+ + + + + + Sbjct: 342 CVMEIDGQGRVVSH-EIVPSVIRTAERMTYNDVRKILEDEDEELRARYAPLVPMFERMRE 400 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 + + R + D + + + + GE I PR IA RI+EE M+AAN A Sbjct: 401 LALILRDKRMRRGAIDFDFDEIKVRVNDLGEPTSIEPRPRSIAERIIEEFMLAANETVAE 460 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL--TLDGFCKLRRELDAQP 460 IY VH DP L L G HV ++ E++ + Sbjct: 461 HFHWLGVPFIYRVHDEPDPDKIIHLNLFLHNFGYHVKGSAGGKVHPRALQEVLNEVEGKR 520 Query: 461 TG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---- 515 + + R A+ E HFGL E Y +TSPIR+Y D+ HR+++ V+ Sbjct: 521 EARMISMVMLRSMQQAKYRPECTGHFGLAAEYYTHFTSPIRRYPDLAIHRIIREVLTRGS 580 Query: 516 ----KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 + E + Q +ER R+ + AER+V +++ + F I + Sbjct: 581 LSPQREAHLREFVAEASRQSSERERIAQEAEREVDQLKMVEYMQAHIDEE--FDGIISGV 638 Query: 572 SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 G+ V+L DNG I L ++ ++ + + V+++ D + V + Sbjct: 639 VPFGLFVQL-DNGVEGLIHISELSDD-YYVLHERQMALIGERTRRVFRIGDPVRVVVIRA 696 Query: 632 RMETRSIIARPV 643 E I V Sbjct: 697 VKEDLRIDFGLV 708 >UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT23_9FIRM Length = 704 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 145/654 (22%), Positives = 268/654 (40%), Gaps = 31/654 (4%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE 67 + K G ++ ++KGFGFL + + +I + ++GD +I + + Sbjct: 52 KKAKLIFVDNKTYFFGKIQTSKKGFGFLITENLDEDIYISEENLNFALNGDDVIVKKYKD 111 Query: 68 --KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 + + +VE + VG Q + +V D I + + K G Sbjct: 112 SSGSKPEGKVVFIVERVNQKVVGIFQATKNFGFVVADDAKFATDIYI--PKKRMNGAKNG 169 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML-- 183 + ++ + P G + + + + + D+ V ++ E V E Sbjct: 170 QKVLVKIDKWPSPG-KKPEGRVLEILGYPDEPHVDILSVAKSLDIPMEFSKTVKREAKSL 228 Query: 184 ------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 +E R DL TID A ++D DDA+ + L + L V IAD ++ E Sbjct: 229 ETSVQAEEIKSRLDLRDKLTFTIDGADSKDFDDAVSLEILENGNYLLGVHIADVAHYVKE 288 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S +D+ A +R + YL IPMLP ELS+ +CSL R L+C M + G + + Sbjct: 289 DSPIDEEAFLRGNSVYLLNKVIPMLPFELSNGICSLNEGVDRLTLSCIMEVDKKGQVINK 348 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 + + I SK +LVYD VSD+LE+ + E ++ + ++ + E R + Sbjct: 349 -KICESVINSKKRLVYDYVSDYLEDGVSDDSLIG-LEETLKNMYELSKILQEKRREMGSI 406 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + P+ + E G +I+ RR AN+++E+ M+ AN A +Y +H Sbjct: 407 DFEVPEALIKVTEDGWPTEILRRERRSANKLIEDFMLLANTTVAEYFFKFEIPFLYRIHE 466 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAE 476 L + L+ G + + KL +++ + F+ + R + A Sbjct: 467 KPREEKIQELNSYLRPLGYMANFGSEIKSRDIQKLLKKVQGKKEELFISTMALRAMAKAR 526 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDEITV 529 S + HFGL + Y +TSPIR+Y D+ HR++K ++G + I+ Sbjct: 527 YSPKNDIHFGLCFQYYTHFTSPIRRYADLTVHRIIKDFLRGDLSKNKVKKLNDDLQGISE 586 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 ++ R+ + AER V A ++ D+ G ++ I I+ G+ V L +N + Sbjct: 587 HISATERVAQEAERQVESIKMAEYMSDRIGK--KYNGIISGITNFGIFVEL-ENLIEGLV 643 Query: 590 PAPFLHAVRDELVCSQENGT-VQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + + N V + + + + D++ + + V + I Sbjct: 644 SYKTM---KGFYEFDPVNYRAVDVDTKNSFGIGDLVTIKVVNVNLTLGKIDFEL 694 >UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLT1_MOOTA Length = 770 Score = 637 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 169/669 (25%), Positives = 278/669 (41%), Gaps = 34/669 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMH 56 + Q+ ++ K L + G ++A+ +G+ F+ + + +I + MH Sbjct: 42 LEQEGYIVRTRKDKYGLPEKMGLVSGRLQASPRGYAFVVPLDKDREDLYIGALNINGAMH 101 Query: 57 GDRIIAVIHSE--KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 GD ++A + R+ E +++ R VG + ++PD L I A Sbjct: 102 GDLVLARVLPGTTGRRQEGEIIRVLQRVNKRVVGTFDATRNLDFVIPDDARLHQDIIIPA 161 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 G + E ++ D V E+ R P + RS + Q + V + ++ LE E Sbjct: 162 --GASLEARDRDKVVVEITRWP-EARRSPEGRVIQVLGQTGAPGVDVLSIIKKYGLETEF 218 Query: 175 PDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 P V E + E R DL VTID A D+DDA+ + PD L V Sbjct: 219 PPEVIREAEEIPRDLEPGELAKRRDLRDWRLVTIDGADARDLDDAVSLERRPDGSYLLGV 278 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ EG LD+ A R + Y IPMLP LS+D+CSL A E R + M Sbjct: 279 HIADVSFYVREGRPLDREAFNRGTSVYFVDRVIPMLPARLSNDICSLNAGEDRLAITALM 338 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQ 345 T+S GT++D E F + I + ++ YD V LE+ + + +L+A++ Sbjct: 339 TISPAGTVKD-YELFPSVIRVRERMTYDDVRRILEDKDPELMERYRELVPDFQLMARLAA 397 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 R + D P+ + L ++G + I+ R +A I+EE MI AN AR L Sbjct: 398 ILRRRRRRRGAIDFDFPEAKVKLDDQGLPVAIIPRHRTVAEGIIEEFMIVANEVVARHLY 457 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL--TLDGFCKLRRELDAQPTG- 462 + +Y VH P +AL L GLH+ F ++ + +P Sbjct: 458 ELAVPAVYRVHEEPAPDKLEALNTFLAYFGLHIKPNREGRVRPRAFQEILAAVKGRPEER 517 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLK--------AV 514 + + + R A + + HFGL Y +TSPIR+Y D++ HR+L+ + Sbjct: 518 VISTVMLRSMMHARYAGDCLGHFGLASPYYCHFTSPIRRYPDLVVHRILRETWSPAGFSA 577 Query: 515 IKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 + + VQ +ER +L AER+ D ++++ G FA I + Sbjct: 578 ERMAQLSAFVALAAVQASEREKLAEEAERESLDMKKVQYMERHVG--ATFAGVISGVVPY 635 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 G V L +N + L Q V Y++ + V + V ++ Sbjct: 636 GFFVEL-ENTVEGLVHVSTLTDDYYHYQEDQ-LALVGEHTGKSYRIGQPVTVLVTRVSVD 693 Query: 635 TRSIIARPV 643 R + V Sbjct: 694 ARQVDFELV 702 >UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6K9_GRAFK Length = 732 Score = 637 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 148/663 (22%), Positives = 273/663 (41%), Gaps = 35/663 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHS 66 + + K ++ S GV+ T KG+G++ V+ FI + GD + + + Sbjct: 67 VERGKFKIESNKNYYTGVLDLTTKGYGYVMVEEFADDIFIANKDLNTAFDGDTVEIYVFN 126 Query: 67 EKERE--SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 + R+ E ++++ T FVG +Q K D +V D + + + + Sbjct: 127 RRRRKRSEGEITKIIKRKRTEFVGTLQQKKDFGFVVIDDKSMHTDFFIPGNK--LNGAEN 184 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 GD V E P K D ++T+ + +H LA++ L + P+ V Sbjct: 185 GDKVVVEFEEWPKKADSPL-GKITRVLGTPGEHHTEIHSILAQYGLPHDFPEEVEEFANK 243 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 +E R D+ + TID +D DDAL + L + ++ + IAD + ++ Sbjct: 244 IDTSINKEEISKRRDMRDVLTFTIDPKDAKDFDDALSFEKLKNGNYEIGIHIADVSHYLQ 303 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 G+ LD+ A RA + YL +PMLP LS++ CSLR E + + + + T+++ Sbjct: 304 PGTILDEEAYERATSVYLVDRVVPMLPEILSNNACSLRPKEEKFTFSAVFEIDDNATVKN 363 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-----------EAIAEQVRLLAQICQ 345 F S + Y++ LE P+ A+ E V L + + Sbjct: 364 QW-FGRTVTYSDERFAYEEAQHILETGTGTIPDDVSIRNHAYSVRGALIEAVVTLNTLAK 422 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + R + D+ + +F L E + + + + AN+++EE M+ AN A + Sbjct: 423 KMRTRRMKDGAISFDKVEVKFNLNEDNNPVGVFFKTAKDANKLIEEFMLLANRKVAEYIG 482 Query: 406 DK--LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQ-PT 461 + +Y H D +L ++ G ++ ++ T KL ++ + Sbjct: 483 KQSPKKTFVYRNHDEPDDQKLASLQTIVGRFGHKLNLKDRSSTTSSLNKLLEDVQGRKEQ 542 Query: 462 GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-- 519 +D+ R S A TE H+GL + Y +TSPIR+Y D++ HRLL+ + G Sbjct: 543 NMVDTLAIRTMSKAYYGTESIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDGAKSA 602 Query: 520 ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 + + +E L AERD ++ +F++D + F I ++ G+ V Sbjct: 603 SEEEYETKCHHSSEMENLATNAERDSIKYMQVKFMQDH--ENEEFLGVISGVTEWGIFVE 660 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 +V+N I ++ E + E V + Y + D + V + + R + Sbjct: 661 IVENKCEGMIRLRDMNDDHYEFN-ADEFSVVGKRTGQTYTLGDEVYVKVKNADLIKRHLD 719 Query: 640 ARP 642 Sbjct: 720 FTL 722 >UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6WZE5_FLAB3 Length = 718 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 153/661 (23%), Positives = 281/661 (42%), Gaps = 38/661 (5%) Query: 8 LAQLKQQLHSQTP-RAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIH 65 + + K ++ + G + + G +++V+ FI +K + GD+++ V + Sbjct: 71 VEKGKYIINLKIEGTVSGTIDFNQAGNAYVKVEEFDDDVFIHSKNVKDALQGDQVLIVTY 130 Query: 66 SEKERE-SAEPEELVEPFLTRFVGKVQ--GKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 K ++ E+++ FVG Q D +V D + I +G Sbjct: 131 HFKGKKLEGSVLEVIKRNREEFVGTFQLINHKDFGFVVCDKKTINTDIFV--PKGKIGGA 188 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 ++GD V +M G+++ E+ + + +H LA + L P V E Sbjct: 189 QDGDKVVVKMTDWKS-GEKNPEGEIIKVLGAPGEHETEIHSILAEYGLPYSFPAEVEKEA 247 Query: 183 LD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 D E R D+ + TID +D DDAL + L + ++ V IAD + + Sbjct: 248 DDIDRTIHDSEVAKRRDMRGICTFTIDPKDAKDFDDALSIQKLNNGNWEIGVHIADVSHY 307 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + G+ LD A RA + YL +PMLP LS+D+CSLR NE + + + + + Sbjct: 308 VQPGTLLDDEAYDRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFEMDENADV 367 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 + F I S + Y++ + +E +AE++ L ++ + + R + Sbjct: 368 VNEW-FGRTVIHSDRRFAYEEAQERIETGTG------DLAEEILTLDRLAKILRKERIRN 420 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG----- 409 + DR + RF L E E + + + + +N ++EE M+ AN + + Sbjct: 421 GAITFDRSEVRFNLDENSEPIGVYFKISKDSNHLIEEFMLLANRKVSEFISLNRKGEPTA 480 Query: 410 -FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCK--LRRELDAQPTGFLDS 466 IY +H DP +AL + T G +D + L+ +++ Sbjct: 481 NTFIYRIHDDPDPTKLEALRDFVGTFGYQMDLANTKKVAESLNRLLQDVKGKGEENMIET 540 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD- 525 R S A ST P H+GLG + Y+ +TSPIR+Y D+I HRLL+ + G + QD Sbjct: 541 LAMRSMSKAVYSTNPIGHYGLGFDFYSHFTSPIRRYPDLIAHRLLQHYLDGGKSPNKQDY 600 Query: 526 -EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 E + + RL AERD ++ +F++ G + F I ++ G V++ +NG Sbjct: 601 EEKSKHCSAMERLAADAERDSIKFMQVKFMEKHLGEE--FTGVISGVADFGFWVQIPENG 658 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 A I L + D +N V + +++ D + + + + + + + + + Sbjct: 659 AEGLIKLRDL--MDDSYSYDPKNHLVHGARTGNQFQLGDKVRIKVMKANLIQKQLDFKII 716 Query: 644 A 644 Sbjct: 717 T 717 >UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9P5_9FIRM Length = 769 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 157/668 (23%), Positives = 274/668 (41%), Gaps = 35/668 (5%) Query: 1 MFQDNPLLAQLKQ--QLHSQTPRAEGVVKATEKGFGFLEV---DAQKSYFIPPPQMKKVM 55 M +D L+ L G ++ T+KG+GF+ + FIP + M Sbjct: 48 MIKDGLLVKTRFNTLGLPRAMGLVTGRLQVTQKGYGFVVPLEKTEEGDLFIPAMHLSGAM 107 Query: 56 HGDRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 + D +IA + H R + ++E RFVG D + PD+ + I R Sbjct: 108 NEDLVIARVSDHGYGGRREGKVIRILERAHERFVGTFTRSGDFGFVTPDNRHIGQDIYVR 167 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 R + GD V ++ P G + +T+ + D + + +L + Sbjct: 168 --RKDFLNARNGDKVVVKITVWPN-GRQKAEGTITEILGKKGDVGIDIISIIKDKDLPLD 224 Query: 174 APDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 P V + R D +T+D ++D+DDA++A+ +D L Sbjct: 225 FPKEVKEAAQLVPQVIPKKDLKGRLDRRKWPIITVDGVDSKDLDDAIYAEKRGED-YFLG 283 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 V IAD + ++ +LD+ A R + YL +PMLP LS+ +CSL E R ++C Sbjct: 284 VYIADVSHYVRPRGELDREAYARGTSVYLVDRVLPMLPPLLSNGICSLNEGEERLTMSCE 343 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQIC 344 M +S + + + I S+ ++ Y V+ L + + + I + + ++C Sbjct: 344 MVISGKTGKVLSYDIAPSVIASRHRMNYPDVAKILTDRDTALREKYSDIVPMLETMEELC 403 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 + R + + P+ + IL EK +D+ R IA ++EE M+AAN A + Sbjct: 404 TILHKKRVRRGAIEFEIPEVKVILDEKKRPIDVHLRHRTIAEMMIEEFMLAANETVAAHM 463 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-F 463 IY VH D +L+ ++ G + E + R++ +P Sbjct: 464 TKHHYPFIYRVHDVPDEDRMQSLSKIMAQFGTVLKIEGKMRPKVLQMALRKVKGKPEEGM 523 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 + + R A TE HFGL + Y +TSPIR+Y D++ HRLLK G+ ++ Sbjct: 524 ISTLALRSMKQAVYQTENVGHFGLAAKDYTHFTSPIRRYPDLLVHRLLKEQRTGQKLSKK 583 Query: 524 QDE--------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 + E + + R RL AER+ + ++ G + F I ++ G Sbjct: 584 EKENLNDKLSLMASHASTRERLAIEAERETDELKMTEYMLPYVGQE--FDGTISGVTSFG 641 Query: 576 MRVRLVDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRME 634 M V+L +NG + L + D +E+ V G Y++ + + + V +E Sbjct: 642 MFVQL-ENGIEGLVHISSL--LDDYYRYDEEHFALVGEHGGKSYRLGSPVRIKVFHVSVE 698 Query: 635 TRSIIARP 642 R I Sbjct: 699 ERKIDFIL 706 >UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z970_EUBR3 Length = 716 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 154/656 (23%), Positives = 259/656 (39%), Gaps = 30/656 (4%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHS 66 L++ + S+ + GV A ++GFGF+ V+ + FIP + MH D + I Sbjct: 68 LSKRGKYSKSEIKKTVGVFTAHQRGFGFVTVEGEPDDIFIPAEYVNGAMHMDTVEITISP 127 Query: 67 --EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R+ + ++E + + V + ++ VPD+ I R Sbjct: 128 VTTGRRKEGKVVSVIERGMKQVVCTYEASDNFGFAVPDNTRFGTDIFIPKERS--KGAMS 185 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 G V E+ + KG + ++ + I DD + ++L + + + ++ Sbjct: 186 GHKVVVEITSYGKKGKKPEG-KVVEIIGHIDDPGTDILSIVKAYDLPVDFSEKIMHQVQN 244 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + R DL VTID +D+DDA+ + D L V IAD + ++ Sbjct: 245 VAKDVTPADMAGRMDLRDWMMVTIDGEDAKDLDDAVSL-YMDGDNYVLGVHIADVSNYVQ 303 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 E S LD A R + YL IPMLPRELS+ +CSL R L+C MT++ G + D Sbjct: 304 EHSALDVEALKRGTSVYLVDRVIPMLPRELSNGICSLNEGCDRLALSCIMTINKKGEVID 363 Query: 297 NIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + + I++ ++ Y V L + E + + +A++ + R Sbjct: 364 H-KIAETVIKTNRRMTYTNVKKILADKDAAVIEEYKELVPMFEKMAELAAILRKKRMKRG 422 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + D P+ + +L E G +DI R +A +++E+ M+ AN A + +Y Sbjct: 423 SIDFDFPETKVVLDEDGHPIDIKPYDRNVATKLIEDFMLIANETVAEDYFWQEIPFVYRT 482 Query: 416 HMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQS 473 H D L+ + G + + + KL ++D L SR+ R Sbjct: 483 HDKPDSEKIAKLSTFINNFGYTLHIGADEVHPKELQKLLMKVDGTDEESLISRLTLRSMK 542 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDE 526 A +T HFGL Y +TSPIR+Y D+ HR++K I+G E D Sbjct: 543 QARYTTACTGHFGLAANYYCHFTSPIRRYPDLQIHRIIKENIRGRMNDNRREHYESILDA 602 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + Q +E R AER+ ++ + G F I ++ G V L N Sbjct: 603 VAKQASETERRAEEAERETVKLKKCEYMSNHIGEC--FEGVISGVTEWGFFVELP-NTVE 659 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + L E YK+ I V + R+I +P Sbjct: 660 GLVRVTDLTDDFYEFY-EDTYELAGTATNKRYKLGQKIKVVVDSADKIMRTIDFKP 714 >UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=B5EJB3_ACIF5 Length = 746 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 169/663 (25%), Positives = 277/663 (41%), Gaps = 28/663 (4%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M +D L+ + + G V A GFGFL + K F+ P +M+KV HG Sbjct: 71 MERDGQLVRNRRGAYGIVEAMELVRGTVSAHPDGFGFLIPEGGGKDLFLSPREMRKVFHG 130 Query: 58 DRII--AVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D I+ AV + R ++E L + VG+ + +VP+ + Sbjct: 131 DTILGRAVGEDRRGRIEGAIVRILERALKQVVGRYYAEGGVRYVVPEDRRIPQEFAVV-- 188 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 G G E+ ++P G + + + + + + + L + P Sbjct: 189 EGGELAPVHGQIVTLEITQYPD-GRNMPQGCVVEILGEHMAPGMEVEIAVRNYGLPHQWP 247 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 D V E+ R DL AL VTID A +D DDA++A+ + + +LIVA Sbjct: 248 DEVLAEITHFSETVPEAIKEGRRDLRALPLVTIDGADAKDFDDAVYAEEIENG-FRLIVA 306 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD ++ S LDK A R + Y P IPMLP LS+ LCSL + R + C M Sbjct: 307 IADVATYVRPDSALDKEAATRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMLCEME 366 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 G ++ F + S+ + YD+V+ L D + A+ + +L ++ + Sbjct: 367 TDLTGEVQ-RFRFARGVMRSQRRFTYDEVAAILAGDEDLRTRDAAMVPHLEVLHRLYESF 425 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + R + D + R I E+ + IVA R +A+RI+EE M+AAN+CAA+ R Sbjct: 426 AKARERRGTIEFDSQESRIIYNEQARIEKIVAVTRNVAHRIIEECMLAANVCAAQYFRIH 485 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDS 466 +Y VH + L L G+ V + + + + + + Sbjct: 486 ELPMLYRVHPEPSGDKLEDLRRFLGELGVPVRLPTHPRSADLASIIEDTRERSDSSLIQT 545 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRP- 523 I R S A + + G HFGL AY +TSPIR+Y D++ HR ++A++ G Sbjct: 546 VILRSLSQAYYTVDTGMHFGLAFLAYTHFTSPIRRYPDLVVHRGIQALLDAAGAEPRWFP 605 Query: 524 ---QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 E+ + R A R+ +WL F+ DK G + I ++ G+ V L Sbjct: 606 QKVLQELGQHCSMTERRADEASREAVNWLKCEFMMDKVGE--TYTGIITGVTGFGLFVAL 663 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 + I L +Q + + + +++ D I + +A V ++ R I Sbjct: 664 REIYVEGLIHISTLGEDYFHFD-AQHYRIIGDRTKETFQLGDEIQIRVANVNLDDRKIDF 722 Query: 641 RPV 643 V Sbjct: 723 ERV 725 >UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B2SQ32_XANOP Length = 842 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 189/664 (28%), Positives = 300/664 (45%), Gaps = 31/664 (4%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M ++ L+ + QT GVV A +GFGFL+ D F+PP +M+KVMHG Sbjct: 163 MVREAQLVQNRRGGYAPVQQTSLIAGVVIANPEGFGFLKPDGGGDDLFLPPFEMRKVMHG 222 Query: 58 DRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR +A + + R ++E ++R +G+ ++ + PD ++ + A Sbjct: 223 DRALANVTGIDRRGRREGAIARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQI--A 280 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 E +EG V E+ P R ++ + + + + H L E P Sbjct: 281 PDGIGEAREGQLVVCELIA-PPDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFP 339 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V E R DL + VTID +D DDA++ + D +L+VA Sbjct: 340 QEVLDEAAAVPLVVEPQMIGGRVDLRQMPLVTIDGEDAKDFDDAVYCEPNADG-FRLVVA 398 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ G+ LD A+ RA + Y PGF +PMLP LS+ +CSL R C M Sbjct: 399 IADVSNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQ 458 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQR 346 + DG + + F+ A + S A+L Y+QV + E D + + QV+ L Q+ Q Sbjct: 459 VGGDGEVTGS-RFYEAVMNSHARLTYNQVWKAVGEGDADTKAFIGPLLPQVQRLHQLYQV 517 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R + + + + RF+L GEV R A++++EE MIAAN+ AAR L Sbjct: 518 LSKARTHRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLS 577 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLD 465 Y VH + + L LK L + A + + KL +++ A+P L+ Sbjct: 578 MHVPAPYRVHERPPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLE 637 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA----- 520 S + R QS A S E HFGL LEAYA +TSPIR+Y D++ HR LK + G + Sbjct: 638 SVLLRSQSLAVYSPENNGHFGLALEAYAHFTSPIRRYPDLLVHRALKHALTGASPEKFIY 697 Query: 521 -TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 R +++Q +ER R AER+V + A +++ G +F I ++ G+ V Sbjct: 698 TPRQMAALSLQCSERGRRADEAEREVDERYRAAWMEKHVG--GQFDGVISGVTGFGLFVE 755 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQ-ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L + + L +D + +++ D + V + + ME R I Sbjct: 756 LTQSKVNGLVHVTQLP--QDYYQFDPIRKTLSGERRGREFRLGDPVRVLVLKASMEERKI 813 Query: 639 IARP 642 R Sbjct: 814 DFRL 817 >UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_VEIPT Length = 764 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 161/666 (24%), Positives = 267/666 (40%), Gaps = 35/666 (5%) Query: 1 MFQDNPLLAQLKQQLH----SQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMH 56 M +L + ++ Q EG+ K K +GF+ + + ++ MH Sbjct: 20 MLAREGVLTSSRPDVYRYEDQQHEEYEGIYKGYRKSYGFVIMLDDEDIYVAEQNKGTAMH 79 Query: 57 GDRIIAVIHSE---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 D++ I K + +++E VG + +VPD + + Sbjct: 80 NDKVRVRIVPSDYTKHKREGIIVDVIERANETIVGTYDRQQHFGFVVPDDERIGTDVFVD 139 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 L + + G + ++ + P +G++ +T+ + + D + +A H + Sbjct: 140 LKNTL--DARSGAKVLVKITKWP-EGNKKPEGIITEILGYKGDVGLDINCIMANHKIPFA 196 Query: 174 APDGVATEMLD------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 P V E R DL L VTID +D+DDA+ + LP+ +L V Sbjct: 197 FPKEVIEASEKIDTIVHEDPKRWDLRDLQMVTIDGEDAKDLDDAVSGRKLPNGNYELGVH 256 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ G +D A R + YL +PMLP LS+ +CSL A+E R + C M Sbjct: 257 IADVSHYVTSGQPIDNEAYKRGTSVYLVDRVVPMLPEVLSNGICSLNAHEDRYAMTCMME 316 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 + GT+ N + I + Y +V LE + +R LA+I + Sbjct: 317 IDDSGTVV-NYRIRPSIIHVGRRCSYKEVYKALEENI-IPDDLVDFIPMLRDLAEISKIL 374 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + D P+Y+ +L G L IV R +A R++EE M+ AN A LRD Sbjct: 375 NRMRRRRGALDFDFPEYKVLLDLDGTPLRIVKRDRTMAERLIEECMLIANETVATHLRDT 434 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQP-TGFLD 465 +Y +H D +L G ++ + +T F K+ + Q Sbjct: 435 ERTSVYRIHENPSEEKLDLFQKVLNYLGQNLVISADGVTPRDFQKILDVVKGQDIEQVAQ 494 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA--VIKGETATRP 523 R A+ S E HFGL Y +TSPIR+Y D++ HRLLKA KG + R Sbjct: 495 IMTLRSMQQAKYSIENVGHFGLASTCYTHFTSPIRRYPDLMVHRLLKADMHWKGGYSKRD 554 Query: 524 QDE-----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 DE + + ++ AER+ D +++ G F I I+ GM V Sbjct: 555 VDEAFLAGAVEHSSIQEQVATEAERETTDLKKTQYMVPFVGE--VFEGTIASITSFGMFV 612 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETR 636 L +NG + + D+ E V + Y + + + VT+ + +E + Sbjct: 613 EL-ENGIDGLVHISMM---NDDYYFFDEEHFVLVGKRTGKTYHLGEKVTVTLVKADVEKK 668 Query: 637 SIIARP 642 I Sbjct: 669 QIDFVL 674 >UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCCDEB Length = 900 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 155/671 (23%), Positives = 262/671 (39%), Gaps = 38/671 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVD-----AQKSYFIPPPQMKK 53 + ++ ++ L S+ G + + KGFGF+ D + F+P + Sbjct: 51 LEEEGVIIRNRSGLYGLPSRMNLVVGRLSMSPKGFGFIIPDARENEEETDVFVPGAALAT 110 Query: 54 VMHGDRIIAVIHSE---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI 110 MHGDR++A + E ++ T VG + + PD + I Sbjct: 111 AMHGDRVVARVTPSESPGRAREGEIIRILVRANTHIVGTFERSKAFGFVTPDSTKIGRDI 170 Query: 111 PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL 170 + K G V E+ + P + RS + + + D V + ++L Sbjct: 171 FV--LKKDFGGAKTGSKVVVEITKWP-EARRSAEGRVIEVLGKTGDPGVDVLAVMRAYDL 227 Query: 171 EKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKL 222 ++ P VA +E R D VTID T+D+DD ++A D + Sbjct: 228 DENFPPDVAAAAAQCPENPLPEEYAGRRDRRDFPIVTIDGEDTKDIDDGIYAYER-DGEF 286 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 L V IAD + ++ G LD A R + YL IPMLP+ELS+ +CSL R + Sbjct: 287 FLGVYIADVSHYVRAGEPLDVEAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSM 346 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ 342 AC M + ADG + + E I +L Y V+ L + ++E I + L + Sbjct: 347 ACEMQIGADGEV-KSYEIVPCVIHVARRLTYTLVNKVLAGEEPFVSDNEDIRPMLETLRR 405 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 + + RH + + P+ + L G + + I I+EE M+AAN AR Sbjct: 406 LREVLRGKRHRRGSIDFELPEIKVKLDAAGHPIALERRTGSIGESIIEECMLAANETVAR 465 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL--DGFCKLRRELDAQP 460 + K +Y VH + +LL GL ++ +E + ++ + P Sbjct: 466 HMELKEEPFVYRVHEAPVSEKIERFQSLLAALGLRLNVDEDGKVRSRDIQQVLDRVKGAP 525 Query: 461 TGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI---- 515 + + R A +T HFGL Y +TSPIR+Y D++ HRLL+ Sbjct: 526 EERIIGAVALRSMQQARYATASLGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGH 585 Query: 516 ----KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 K E E + R R+ AER+ D ++ G F I + Sbjct: 586 IPAEKRERLRTVLSEAAEHSSARERIAVEAERETTDMKKIEYMAQFVGE--TFEGVISGV 643 Query: 572 SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 + G+ V L +NG + + ++ V + Y++ D + + I Sbjct: 644 TAFGIFVEL-ENGVEGLVHVSTM-VNDYYSYVEEQYAMVGERTGARYRLGDAVTIIITRA 701 Query: 632 RMETRSIIARP 642 ++ R++ Sbjct: 702 DVQARTLDFVL 712 >UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RRW9_9CLOT Length = 748 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 157/694 (22%), Positives = 262/694 (37%), Gaps = 68/694 (9%) Query: 7 LLAQLKQQLHSQTPR-------AEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGD 58 L+++ + + + G+ KGFGF+ V+ ++ FIP + +HGD Sbjct: 51 LVSEGRIGISKKGKYGKPEVFSVNGIFCGHPKGFGFVTVEGMEQDVFIPEDRTGAALHGD 110 Query: 59 RIIAVIHSE----KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 R+ V+ S+ R +++E VG Q ++PD+ + I Sbjct: 111 RVQIVVESQDRGGGRRAEGSVLKVLEHANKEVVGYYQKSKGFGFVIPDNQKISKDIFIPQ 170 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 G + G VA ++ + +T+ + +D + + L +E Sbjct: 171 --GCDMGAVTGHKVVARIKEFGD-ANHKPEGVVTEILGHVNDPGTDILSIVRAYGLPEEF 227 Query: 175 PDGVATEML----------------------------------DEGLVREDLTALDFVTI 200 P V E+ + R DL L VTI Sbjct: 228 PPEVMDEVEGCPDEVAVPGMTRDEETWDGPYGIGDLTSPADWTGDLAGRLDLRGLRTVTI 287 Query: 201 DSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIP 260 D +D+DDA+ L V IAD + ++ EG LDK A R + YL IP Sbjct: 288 DGEDAKDLDDAVTLCRNGQGGYILGVHIADVSHYVKEGRPLDKEALKRGTSVYLVDRVIP 347 Query: 261 MLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL 320 MLP +LS+ +CSL A R L+C M L G + D+ + I ++ Y V+ + Sbjct: 348 MLPHKLSNGICSLNAGTDRLALSCIMELDDQGNVLDH-KIAETVIHVDRRMTYTAVNAIV 406 Query: 321 -ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVA 379 + E E L+ ++ E R + D P+ + IL +G+ L+I Sbjct: 407 TDGDEAVMAEYEGFVPMFMLMKEVSDILREKRKKRGAIDFDFPESKIILDAQGKPLEIKP 466 Query: 380 EPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVD 439 R A +I+E+ M+AAN A + +Y H DP L + G + Sbjct: 467 YERNAATKIIEDFMLAANETVAEDYFWQSLPFLYRTHDNPDPEKMKQLGTFIHNFGYFIR 526 Query: 440 AEE-VLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTS 497 ++ + KL +++ P L SR+ R A+ +T HFGL Y +TS Sbjct: 527 LQQGEIHPKELQKLLDKIEGTPEEVLLSRLTLRSMKQAKYTTLCSGHFGLAARYYTHFTS 586 Query: 498 PIRKYGDMINHRLLKAVIKG-------ETATRPQDEITVQMAERRRLNRMAERDVGDWLY 550 PIR+Y D+ HR++K +KG + +Q + R AER+ Sbjct: 587 PIRRYPDLQIHRIIKESLKGGLGDKRAGHYEAILPGVAMQTSALERRAEEAERETDKLKK 646 Query: 551 ARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG-- 608 ++ G + F + ++ G+ V L N + L RD+ E Sbjct: 647 CEYMSRFIGQE--FDGVVSGVTNWGLYVELP-NTVEGLVRISEL---RDDYYIFDEQHYE 700 Query: 609 TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 V +K+ I V +A R++ Sbjct: 701 LVGEMTRKTFKLGQPIRVQVASTDRLLRTVDFIL 734 >UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B076_SYNWW Length = 705 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 157/666 (23%), Positives = 271/666 (40%), Gaps = 34/666 (5%) Query: 1 MFQDNPLLAQL--KQQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMH 56 + ++ ++ K L +G++ ++KGFG L D F+ ++ MH Sbjct: 46 LEKEGEIVKTRAGKFGLPEMMNLVKGIIHISKKGFGVLVPDKAGLGEVFVYGKKLNGAMH 105 Query: 57 GDRIIAVIHSEK---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 DR++ I + +R ++ VG L +VPD I + Sbjct: 106 NDRVMVRIQEKGYNGQRPEGTVIRILARNTRELVGTFTKGRHLLQVVPDDSRQIYPIYVK 165 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 A+R + KEGD + + P + D+ ++ + + + V V +H L E Sbjct: 166 ASRKW--KAKEGDKVLVRISSWPER-DKVAEGKIVEVLGRKGEAGVDLKVLAKKHGLRLE 222 Query: 174 APDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 PD V E +E R DL VTID +D+DDA+ + +L Sbjct: 223 FPDNVMEEARNVAVEVNAEEISRRRDLREWRMVTIDGEDAKDLDDAVSIEKTSKG-YKLG 281 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 V IAD + ++ E KLD+ A R + YL +PMLP ELS+++CSL R ++C Sbjct: 282 VHIADVSHYVKEDCKLDREAFKRGTSVYLIDKVLPMLPVELSNNICSLNPQVERLAISCI 341 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQIC 344 M + + G + D E + I+ ++ Y V+ L +N + + E L+ ++ Sbjct: 342 MDIDSWGQVVD-YEIVKSVIQINERMTYSDVNRILADNPPALKERYGELVEDFFLMKELS 400 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 R N ++ D P+ + I+ E+G L++ R ++E+ MI AN A L Sbjct: 401 DILRRSRLNRGMLDFDFPESKVIVDEEGFPLEVKRAERGPGEMLIEDFMIKANEVVAEHL 460 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-F 463 + +Y VH D L +L G + ++ F + ++ QP Sbjct: 461 HNLGLPVLYRVHEKPDEEAISELNKVLAVFGHKIK-GHKVSPMLFQGILADIKGQPEEQM 519 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 + I R A EP HFGL Y +TSPIR+Y D+I HR+L +++ G TR Sbjct: 520 ISLMILRSMKHASYLPEPRGHFGLASPYYCHFTSPIRRYPDLIVHRVLSSLLDGGMTTRK 579 Query: 524 QDEI-------TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + + Q + + AER++ D A+++ G + F+A I + G Sbjct: 580 KSSLEKKMTIYGEQSSLQEMKAEEAERELLDVKKAQYMSQFVGDE--FSARISSVQAFGF 637 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 V L +N + + L + + + D + V + V ++ Sbjct: 638 FVAL-ENTVEGLVHISSIADD-YYLFSDRTYTLRGRHSGRKFAIGDQVRVQLVRVDVDEG 695 Query: 637 SIIARP 642 I Sbjct: 696 KIDFEL 701 >UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM3_9FIRM Length = 755 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 155/646 (23%), Positives = 270/646 (41%), Gaps = 34/646 (5%) Query: 23 EGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVI---HSEKERESAEPEEL 78 EG KGFGF+E++ Q + FIP MH D++ +I E +R+ ++ Sbjct: 111 EGTFIGHPKGFGFVEIEGQDEDIFIPESDTGTAMHQDKVRIIIRNDKKEGKRQEGVVVKV 170 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 +E + VG Q D ++ D+P I K GD + + + Sbjct: 171 LERGMPEIVGTYQLNRDFGFVISDNPKFSKDIFIPRKEAA--GIKNGDKVIVVITDYGS- 227 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--------DEGLVRE 190 G+++ ++ + + + + E P+ V + + R Sbjct: 228 GNKNPEGKIKENLGNIRTPGTDILAIVKSFGIPSEFPEKVMKQAQRVPDHVLDADRDGRL 287 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL L VTID +D+DDA+ D L V IAD + ++ S LD+ A R Sbjct: 288 DLRHLQTVTIDGEDAKDLDDAISLTK-EGDIYHLGVHIADVSNYVQYNSALDREALKRGT 346 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + YL +PMLP LS+ +CSL E R L+C M ++ G + + + I + Sbjct: 347 SVYLADRVVPMLPERLSNGICSLNQGEDRLALSCLMDINEKGKVVSH-QIAETVINVNER 405 Query: 311 LVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG 369 + Y V + LE+ + + EA+ ++ ++ RH+ + D P+ + IL Sbjct: 406 MCYTDVKNILEDTDEEAKKRYEALIPMFFMMKELSGILRNSRHHRGSIDFDFPESKIILN 465 Query: 370 EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAA 429 G+ +D+ +A +I+E+ M+ AN A+ + +Y H DP ++L Sbjct: 466 AAGKAIDVKPYEANVATKIIEDFMLMANETVAQEYCTEEIPFVYRTHDNPDPEKVESLLT 525 Query: 430 LLKTHGLHV-DAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGL 487 LL G+ + A+E +T ++ ++ P + + R A+ +TE HFGL Sbjct: 526 LLHNQGVKIQKAKEEITPKEIQQIIESIEGLPNEAMISRLVLRSMKQAKYTTECSGHFGL 585 Query: 488 GLEAYATWTSPIRKYGDMINHRLLKAVIKG--------ETATRPQDEITVQMAERRRLNR 539 + Y +TSPIR+Y D+ HR++K ++G E DE+ Q + R Sbjct: 586 AAKYYCHFTSPIRRYPDLQIHRIIKDNLRGRLMREGRTEHYAEILDEVARQSSVCERRAD 645 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 AER+ A ++ G + F I ++ G+ V L N + L D Sbjct: 646 EAERESDKLKKAEYMSYHLGEE--FEGIISGVTGWGLYVELP-NTVEGLVHVNTLRD--D 700 Query: 600 ELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 + QE + VYK+ D + V +A+ +++ VA Sbjct: 701 YYIFDQETYELRGEMTKKVYKLGDKVCVRVADADKMLKTVDFELVA 746 >UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR_THEMA Length = 710 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 157/657 (23%), Positives = 272/657 (41%), Gaps = 32/657 (4%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGF-GFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE- 67 + G ++ T G+ F+ D + +P K MH DR++ I Sbjct: 58 SRGRYRKLGEDLKVGTIEFTRSGYVAFVITDDFEEIAVPVEDTKYAMHKDRVVVEITGTW 117 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + ++E L R VG K +VPD P + K Sbjct: 118 RGLPRGRVVRVLERGLKRVVGVFDHKGTFGFVVPDDPKIAYDFYVAPEN--IDGAKPNQK 175 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK--EAPDGVATEM--- 182 +AE+ ++P G ++ A++ + + DD + + +H+L + E P+ V E Sbjct: 176 VIAEILKYPSPG-KNPEAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREANAI 234 Query: 183 -----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 + + R+DL VTID +D DDA+ + LP+ L V IAD + ++ E Sbjct: 235 PARVRKKDLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKE 294 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 GS LD+ A R + YL IPMLP LS+ +CSL + R ++ M + DG + Sbjct: 295 GSALDQEAFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVV-R 353 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 + + + I+SK +++Y++V+++LE+ E E + + ++ + E R + Sbjct: 354 YDVYPSVIKSKKRMIYERVNEFLEDPSSM-KEYEPFKDLIYNAVELAEILREARRKRGAI 412 Query: 358 -FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + + + IL E G+V+DIV R IA +++EE MI AN A + +Y VH Sbjct: 413 LDIESDEVKVILDENGQVVDIVPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVH 472 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFA 475 DP L L+ G+ + KL ++ P ++ + R A Sbjct: 473 EEPDPETIFQLKNYLEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRA 532 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG---------ETATRPQDE 526 S HFGL AY +TSPIR+Y D++ HRLLK ++ E ++ + Sbjct: 533 MYSAVNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEKFSKVLPK 592 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 I + R R+ AE D+ ++ G F + +I++ G+ V + + Sbjct: 593 IAKHCSRRERVADEAEWDLVAMKKVEYIARHIGE--VFNVVVTNITKFGLFVEIPEKSIS 650 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L N + + V+++ DV+ + I V Sbjct: 651 GLVHISTLDD--YYYYDETRNMLIGKRKGKVFRLGDVLKAKVVRADKIRGEIDFVLV 705 >UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 Length = 715 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 144/667 (21%), Positives = 271/667 (40%), Gaps = 38/667 (5%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKG-FGFLEVDAQKSYFIPPPQMKKVMHG 57 M +D+ L + + +L+ GV + G F+ D ++ FI M+ Sbjct: 61 MIEDDFLQEVEKGHYKLNDHGLIMTGVFQRKSNGKNSFIPDDGGETIFIAERNSAHAMNN 120 Query: 58 DRIIAVIHSEK--ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D++ + +++ E E++E FVG ++ + ++ ++ L + I Sbjct: 121 DKVKIALFAKRKNRNPEGEVIEILERANDTFVGTLKVEKFYAFLLTENRTLANDIFIPKD 180 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + K GD AV ++ P + ++ ++ + ++ LA L P Sbjct: 181 K--LKGGKNGDKAVVKIVEWPEEA-KNPIGQVIDILGKAGENTTEMHAILAEFGLPYVYP 237 Query: 176 DGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V T + RED + TID +D DDAL + + ++ V Sbjct: 238 KNVETAAEKIPAEISEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVH 297 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD T ++ EG +DK A+ RA + YL IPMLP L + +CSLR +E + + Sbjct: 298 IADVTHYVKEGGVIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFN 357 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 ++ G ++D+ I+S + Y++ +E E++ L ++ Q Sbjct: 358 MNEKGEVKDS-RIVHTIIKSDRRFTYEEAQKVIETGEG------DYKEEILELNKLAQIL 410 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL--- 404 + R + DR + +F + E G+ L + + + AN+++EE M+ AN A + Sbjct: 411 RKQRLAAGAIDFDRVEVKFEIDETGKPLSVYFKESKEANKLIEEFMLLANRTVAEKIGKV 470 Query: 405 --RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLT--LDGFCKLRREL-DAQ 459 K Y +H DP + L + G + T +L ++ + + Sbjct: 471 PKNKKAKVFPYRIHDLPDPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKK 530 Query: 460 PTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 +++ R A ST H+GL + Y +TSPIR++ DM+ HRLL + G Sbjct: 531 EQNLVETVSLRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAGGR 590 Query: 520 --ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 +E+ +E ++ AER + F+ ++ G + F I ++ G+ Sbjct: 591 TVQEAKYEELCDHSSEMEQIAANAERASVKYKQVEFMGERLGME--FDGVISGVTEWGLY 648 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETR 636 V L +N IP L D ++N + + + D + + +A +E + Sbjct: 649 VELNENKCEGMIPMRDLGD--DYYDFDEKNYCLTGRRHHKKFSLGDPVTIKVARANLEKK 706 Query: 637 SIIARPV 643 + V Sbjct: 707 QLDFALV 713 >UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M940_CAPOD Length = 742 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 138/669 (20%), Positives = 258/669 (38%), Gaps = 42/669 (6%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHS 66 + + K Q G + + +G G++ VD F+ + K +HGD + + Sbjct: 82 IDRGKYQAIPMQHYYVGTLDVSARGNGYVIVDGLDNDIFVAQNFLNKALHGDLVEVYVFP 141 Query: 67 E---KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 + + E +++E RFVG VQ + +VP + + + + Sbjct: 142 RFRNRNKMEGEISKVLERNKVRFVGTVQMHKNFAFVVPTDARMYTDFFV--LKDKLNGAQ 199 Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML 183 +GD + + K D S + Q + + LA + L P+ V Sbjct: 200 DGDRVIVRIEDWKDKSD-SPMGVVEQILGKPGEQTTEMHSILAEYGLPYTYPEEVEAFAK 258 Query: 184 --------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 +E R D+ TID +D DDAL K L + ++ V IAD + ++ Sbjct: 259 KLDLSITDEEIARRRDMRENLTFTIDPRDAKDFDDALSFKLLENGNYEIGVHIADVSHYV 318 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 EG+ LD+ A RA + YL +PMLP L + CSLR +E + + ++ + Sbjct: 319 KEGTILDEEAYNRATSVYLVDRVVPMLPEVLCNFACSLRPDEDKYTFSAVFEMNKKAEVV 378 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLEN---------------TGDWQPESEAIAEQVRLL 340 D I S + Y++ +E T + + E + L Sbjct: 379 D-IWIGRTVTHSSFRFAYEEAQSVIEQAKVGEGYTIPAETSITDKERAIPAEVVEAILTL 437 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 + ++ R + D+ + +F L E G + + + AN+++EE M+ AN Sbjct: 438 NTLAEKLRRKRMRLGAITFDKVEVKFDLDENGNPTGVYFKESKEANKLIEEFMLLANRKV 497 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDA- 458 A + +Y VH D A++ G ++ T D L E+ Sbjct: 498 AEYVAKMKKTFVYRVHDEPDADKLQQFNAVISRFGYSLNLNNRQTTTDSLNNLLEEVKGK 557 Query: 459 QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 + +D+ R + A +T+ H+GL E Y +TSPIR+Y D++ HRLL+ + Sbjct: 558 KEQNLVDTLAIRSMAKATYTTKNIGHYGLAFEYYTHFTSPIRRYPDVMVHRLLQLYLDNA 617 Query: 519 T--ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + ++ L AERD ++ ++++ + +FA I ++ G+ Sbjct: 618 PSQPEAEYETKCKHSSQMESLAASAERDSIKYMQVKYMEAH--KNQQFAGVISGVTEWGI 675 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRME 634 V + N + A + +D+ E V Y++ D + + + + Sbjct: 676 YVEITVNKCEGLVRARDI---KDDYYTFDEQQYALVGQATGKTYQLGDEVMIRVKNTDLM 732 Query: 635 TRSIIARPV 643 + + + Sbjct: 733 KKQLDFELI 741 >UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXP1_HALNC Length = 803 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 168/664 (25%), Positives = 273/664 (41%), Gaps = 31/664 (4%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M +D ++ + + G V GFGFL D F+ P M+ +++G Sbjct: 67 MERDGQVIRNRRGGYVPVTHAELVRGRVLGHRDGFGFLVPDDGGDDVFLSPRVMRALLNG 126 Query: 58 DRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR + + + R E++E VG++ + +VPDH + I Sbjct: 127 DRAVVQVTGLDRRGRREGNLVEVIERANAEIVGRLVLEAGIAFVVPDHARITQDILVPM- 185 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 ++G + P ++ + + + V + H + E P Sbjct: 186 -TDLMGARDGQIVRVALVEQPTL-RHKPVGKVVEVLGDHMSPGMEIDVAINSHGIPHEWP 243 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + V + R DL ++ VTID A ++D DDA+F +A P+ +L+VA Sbjct: 244 EEVLAAIDGLNPEVEESHKSGRVDLRSMPLVTIDGADSKDFDDAVFCQAAPEG-FRLLVA 302 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ GS LD+ RA + Y PG +PMLP LS+ LCSL R L M Sbjct: 303 IADVSHYVNVGSALDREGFNRATSVYFPGRVLPMLPEVLSNGLCSLNPAVDRLCLCADML 362 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQR 346 ++ +G I FF ++S A+L YD V+ L + + + + E + L + + Sbjct: 363 INNEGHI-AKFRFFEGVMKSAARLTYDTVAKVLVDQDAEARAAHAHLLEPLETLHGVYKV 421 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D + + + GE ++ IV R A++I+EE MIAAN+ A R + D Sbjct: 422 LRSARERRGAIDFDTVETKIVFGEGRKIEAIVPYERNDAHKIIEECMIAANVAAGRFVAD 481 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LD 465 +Y VH L A+L GL + + + F L ++ + + Sbjct: 482 HKIPALYRVHDRPTAEKITDLRAMLAEKGLSLGGGDQPSPKDFNALLSQVQGRADFLTIQ 541 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA---TR 522 + I R A S + HFGL E YA +TSPIR+Y D++ HR ++ +++ Sbjct: 542 TMILRSLKQAVYSPDNLGHFGLAHEFYAHFTSPIRRYPDLMVHRAIRHLLRTGAPDRFPY 601 Query: 523 PQDE---ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 DE I + R A RD DWL F+ DK G F + + G+ V Sbjct: 602 NHDEMVIIGEHCSNNERRADEATRDATDWLKCEFMLDKVGE--VFEGRVASVLGFGLFVE 659 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L D + L +D + VY + D I V +A V ++ R I Sbjct: 660 LKDFFVEGLLHITAL--TKDYYHFDPVTLSLRGERSGRVYALNDAITVRVARVDLDERKI 717 Query: 639 IARP 642 Sbjct: 718 DFVL 721 >UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9X2_9GAMM Length = 831 Score = 620 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 181/667 (27%), Positives = 290/667 (43%), Gaps = 32/667 (4%) Query: 1 MFQDNPLL--AQLKQQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHG 57 M L+ Q + + + G V A ++G+GF + + FIPP M ++MHG Sbjct: 74 MLGAGQLMCNRQGRFGVARKMDLISGFVVAHQEGYGFFSPENGEPDGFIPPKYMAELMHG 133 Query: 58 DRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D+I+A + E+ R+ P E++E R VGK+ + +++PD+ L + A Sbjct: 134 DKILARVKDTDERGRKDYAPVEILERAQKRIVGKLAVQQGVWSLLPDNRRLTHHLIIPA- 192 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 K G + E+ +P + + ++ + + + + HN+ P Sbjct: 193 -DALGGGKAGQVVIGEITAYPSRFQQPI-GKVVAVLGEAMAAGMEVDIAIENHNIPAVFP 250 Query: 176 DGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + V + + R DL L FVTID S D DDA++A+ + +L VA Sbjct: 251 EAVREQCEKIPDALRDQDYEGRLDLRHLPFVTIDGISARDFDDAVYAEKRGE-NYRLYVA 309 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD ++ S LD A R + Y P IPMLP +LS+ LCSL N R + C +T Sbjct: 310 IADVAHYVRPDSPLDIEAYNRGTSVYFPDRVIPMLPEKLSNGLCSLNPNVDRLAMVCEIT 369 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-EAIAEQVRLLAQICQR 346 L+ DG+I+ + F A I S A+L Y+ V + L ES A+ + L + Sbjct: 370 LAPDGSIKRSA-FHDAVIHSHARLTYETVEEILFLDNQMVRESFAALQRPLDNLKTVYGI 428 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R +++ + FI +G++ I A R ++R++EE MIAANICAA+ + Sbjct: 429 LRAARLARSVIDFHASEPEFIYDSEGKIETIQARARLESHRLIEECMIAANICAAKYIGR 488 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFL 464 +Y VH L L G+ + T F L + +P + Sbjct: 489 HKLPALYRVHDHPSAERLGKLIDFLGKRGIKWQGALDNATPAQFSALLAQCADRPDFAQI 548 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET----- 519 + + R S A E HFGL LE YA +TSPIR+Y D++ HR ++ ++G T Sbjct: 549 EIMVLRSMSQAIYIPENRGHFGLALEHYAHFTSPIRRYPDLLVHRAIRHQLQGGTRDNYR 608 Query: 520 -ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 + E + R A RD D+L F+ + G F I +I+ G V Sbjct: 609 YSAESMVEKGKHCSMTERRADEATRDAMDFLKCEFMSHRIGE--TFTGRIANITNFGFFV 666 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 L D + L D S E + T + + D +++ +A+V +E R Sbjct: 667 TLDDIYIDGLVHVSAL--TNDYYHYSAETFTLNGERSGTRFALMDAVEIQVAKVDIEERK 724 Query: 638 IIARPVA 644 I +A Sbjct: 725 IDFELLA 731 >UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ5_9SPHI Length = 825 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 148/682 (21%), Positives = 264/682 (38%), Gaps = 51/682 (7%) Query: 3 QDNPLLAQ--LKQQLHSQTPRAEGVVKATEKGFGFLEVDA--------QKSYFIPPPQMK 52 + ++ Q + + EGVV F F+ D ++ + Sbjct: 100 DEGTIVRQPDGTYRADADANVVEGVVDHVNSRFAFVIPDTAAGTARDRDDDIWVSTDDLA 159 Query: 53 KVMHGDRIIAVIHSE---------KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDH 103 + GDR+ V + + R + +VE T VG+++ +VPD Sbjct: 160 GAVDGDRVRVVRFQDSRNGGRNAARRRIEGKVASVVERGRTELVGRIEVWPTYGFVVPDS 219 Query: 104 PLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRS--FYAELTQYITFGDDHFVPW 161 + D I + +G+ + + + P F E+ + + Sbjct: 220 KKIYDDIFIPKEK--LGGANDGEKVIVRLTKFPDPNSSKQRFEGEVITVLGVAGQNNTEM 277 Query: 162 WVTLARHNLEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALF 213 LA L P V E + R D+ + TID +D DDAL Sbjct: 278 HAILAEFGLPIHFPADVEKEAEAIPTKILKKDLAKRRDMRDVTTFTIDPIDAKDFDDALS 337 Query: 214 AKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSL 273 + L + ++ + IAD T ++ GSKL++ A RA + YL +PMLP +LS+ LCSL Sbjct: 338 VQILDNGNFEIGIHIADVTHYVLPGSKLEEEAFKRATSVYLVDRVVPMLPEKLSNGLCSL 397 Query: 274 RANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAI 333 R NE + + +++D I + F I S + Y++ D L + Sbjct: 398 RPNEDKLTFSAVFEMTSDAKIVNEW-FGRTAIHSNRRFAYEEAQDILNSNSG------DY 450 Query: 334 AEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAM 393 E++RLL ++ + + R + + + + RF L E G L + + R+ N+++EE M Sbjct: 451 IEELRLLNELAYKLRDERFKNGAINFETVEVRFRLDENGVPLAVYPKIRQDTNKLIEEFM 510 Query: 394 IAANICAARVLRDK--------LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLT 445 + AN A + +Y VH + + + G ++ ++ Sbjct: 511 LLANKRVAEFVHSLSKRNKGGEENTMVYRVHESPAEDKLRSFSDFARKLGYKLNVDDEHL 570 Query: 446 LDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGD 504 + + ++ +P L R S A STE HFGL + Y+ +TSPIR+Y D Sbjct: 571 SNSMNRFMASIEGKPEANMLQQLAVRTMSKARYSTEDLGHFGLAFKRYSHFTSPIRRYPD 630 Query: 505 MINHRLLKAVIKGETA--TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 M+ HRLL+ + +E +ER ++ AER + F+ + D Sbjct: 631 MMAHRLLQHYLDKGKPADRDEYEEKCRHSSEREKMASDAERASIKYKQVEFMS-RMAPDQ 689 Query: 563 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTD 622 F I ++ G+ V + +N + L E + + + +Y D Sbjct: 690 VFEGVISGVTEFGIFVEITENSCEGLVRMQDLSDDFYEFD-KDNYRIIGSRTKKMYTFGD 748 Query: 623 VIDVTIAEVRMETRSIIARPVA 644 + V + E + RS+ V+ Sbjct: 749 AVVVRVKETNLARRSMDFALVS 770 >UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PAC9_CHIPD Length = 705 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 141/656 (21%), Positives = 267/656 (40%), Gaps = 33/656 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE 67 + Q+ SQ G V+ T G F+ ++ +K + + + GD ++ + + Sbjct: 4 KKKPQKHSSQKKTFRGTVQITRSGMSFVIIEGQEKDVMVRQKNLNTALDGDEVLVDVIKQ 63 Query: 68 K---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R E+++ F G +Q ++P+ L I A + K Sbjct: 64 GKNEGRMEGVITEIIKRKKIEFTGSLQVNKGFAFLIPEKGLFMPDIYIPA--NSLKDAKN 121 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 GD AV + K + E+ + + + + + L PD V E+ Sbjct: 122 GDKAVVRVVAWGEKTRK-PVGEVVEVLDASNTNDLAMKEILIESGFPLSFPDEVLKELNE 180 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 +E R+D TID +D DDA+ + L + ++ V IAD + ++ Sbjct: 181 IQENIDAEEVKKRKDFRKTLTFTIDPVDAKDFDDAISIRKLRGNWYEVGVHIADVSHYVQ 240 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 + LDK A RA + YLP +PMLP ++S++LCSLR +E + + ++ G I++ Sbjct: 241 PDTALDKEADKRATSVYLPDRVLPMLPEKISNELCSLRPHEDKLTFSAVFKMNDKGEIKE 300 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 N I S + Y+QV + +E ++V LL +I Q + R + Sbjct: 301 NW-IGRTVIHSDHRFTYEQVQEVIETGEG------PYKDEVLLLNKISQTLRKVRFENGA 353 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR------DKLGF 410 + + RF L E + + IV + + A++++EE M+ AN A + ++ Sbjct: 354 INFSSQEVRFQLDENAKPIGIVIKESKEAHQLIEELMLLANRTVAEYVYNIRIGTNQHVP 413 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLD-GFCKLRRELDAQPT-GFLDSRI 468 Y VH D +A + G ++ + + L F ++ + +P L++ Sbjct: 414 FPYRVHDTPDEEKLKMFSAFARKFGHKLEVDNLEKLARSFNEMLQLAHGKPEQHVLETLG 473 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-TATRPQDEI 527 R + A +T+ H+GLG E Y +TSPIR+Y D++ HR+L+ + + + ++ Sbjct: 474 IRTMAKAAYTTDDIGHYGLGFEHYCHFTSPIRRYPDVLVHRVLQQCLSHDIHPDKQMEKK 533 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +E R AER + +++ G + F + ++ G V VD Sbjct: 534 CKHSSEMERKAMEAERAANKYKQVEYMQQYIGEE--FDGVVSGVAHFGFWVETVDTKCEG 591 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + + + QE V ++ D + + + + R + V Sbjct: 592 LVSIHSMSTKDEFVYDEQEYSLVGSFTGRKIRIGDKVRIQVVAANLVKRQLDYDLV 647 >UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3M9_9FIRM Length = 750 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 145/645 (22%), Positives = 259/645 (40%), Gaps = 32/645 (4%) Query: 19 TPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE-KERESAEPEE 77 +G + KGFGFL+++ + S I + M+GD I + E Sbjct: 69 GGYYQGALSVNRKGFGFLDLEDENSIHITEANLHGAMNGDVAIVKKLPSFYGSDEGEVIR 128 Query: 78 LVEPFLTRFVGKVQGK-NDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 +++ VG L + D +K + + + G + ++ R+ Sbjct: 129 VLQHKTNTLVGTFFTSVGKGLQLRLDDERIKSRLIVKNWQAFKM--VSGTKVLLKVLRYG 186 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLV 188 E+ Q + DD V L ++++ + P+ V + E Sbjct: 187 D----PMELEIVQLLGHIDDPGVDILSVLLEYDIDPQFPEEVMEQAQRTPSRVSPKEKEG 242 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R D T +TID ++D+DDA+ + + +L V IAD + ++ E S LD+ A R Sbjct: 243 RRDCTGKMIITIDGEDSKDLDDAVCVEKIA-GGYRLGVHIADVSHYVPENSPLDQEALKR 301 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + Y+ +PMLP LS+ +CSL +R L+C M +S G I N E F + I++ Sbjct: 302 GTSTYVVDRVVPMLPHLLSNGICSLNPKVLRLTLSCEMEISEAGEIL-NYEIFPSFIKTT 360 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 ++ Y V+ LE + + + + E + + + + RH + + P+ + IL Sbjct: 361 ERMTYTAVNAILEGEEEACRKYKKLTEMIGWMRDCSRAIRKRRHEAGAIDFETPEAKIIL 420 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 E+ ++ +I R+ A I+E+ M+ AN C AR ++ +Y VH +P A Sbjct: 421 NEQNKIEEIQVRERKEAEMIIEDFMVTANECVARHMKWFEIPALYRVHEAPEPKKLRDFA 480 Query: 429 ALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPGPHFG 486 ++ G E + +L P + + + R A+ HFG Sbjct: 481 KIVLLMGKRFKGSVEQIRPLQLQQLLDSFKDDPAYPVISTMMLRSMQKAKYDPRCLGHFG 540 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKG--------ETATRPQDEITVQMAERRRLN 538 L LE Y +TSPIR+Y D+I HR+L G + +E +ER R Sbjct: 541 LALEEYTHFTSPIRRYPDLIVHRMLHKYGFGTALDPEMMKQDELKMEEYGKLTSERERAA 600 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR 598 AER+V D A +++D+ G I +++ G V L +N + L Sbjct: 601 IEAEREVEDMKKAEYMEDQIGKIA--EGVISGVTKFGFFVEL-ENTVEGLVHVQKLTDDY 657 Query: 599 DELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + +Y++ + + + + I V Sbjct: 658 YHYDP-DTLSLKGERTKKIYRLGQRVKIKVTGASKLHQEIDFDLV 701 >UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni RepID=D0J279_COMTE Length = 882 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 154/687 (22%), Positives = 276/687 (40%), Gaps = 63/687 (9%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVI--HSEK 68 + ++ G V+ G GF+ D ++ ++PP +M+ V+H D++ I H + Sbjct: 9 RAKVADMNEEILGTVQGHRDGHGFVVRDDGERDIYLPPNEMRAVLHKDKVQVRIARHDHR 68 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 R E+VE +G+ ++ + P+ + K G Sbjct: 69 GRPEGRVVEIVERPDQPIIGRFLQESGVWLVAPEDKRYGQDVLI--PSNATGAAKPGQVV 126 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------ 182 V E+ P + +T+ + DD + + + ++ + D + Sbjct: 127 VVELTEAPALFGQ-PVGRITEVLGEVDDPGMEIEIAVRKYGVPHIFSDACLEQAKALPEK 185 Query: 183 --LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD---KLQLIVAIADPTAWIAE 237 + R DLT + VTID D DDA++ + +L+VAIAD + ++ Sbjct: 186 VRPADYKHRIDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRSKGWRLLVAIADVSHYVTT 245 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 GS +D A RA + Y P IPMLP +LS+ LCSL + R + C M ++A G I Sbjct: 246 GSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLITAQGEI-HA 304 Query: 298 IEFFAATIESKAKLVYDQVSDWLENT-GDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 +F+ A + S A+ Y +V+ L NT G + + + + L + Q + R Sbjct: 305 YQFYPAVMHSHARFTYTEVAAILANTRGPEAAKRKERVQDLLNLYGVFQSLLKAREARGA 364 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 V + + + + + G + IV R A++++EEAM+AAN+C+A + G++ VH Sbjct: 365 VDFETTETQIVCDDNGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIDQSGQLGLFRVH 424 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFA 475 + L LK G+ + E + F ++ +P + + + R A Sbjct: 425 DKPSLEKQEILRNYLKAMGVSMSISENPSTKEFQQIANATKDRPDSQQIHTMLLRSMMQA 484 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG------------------ 517 + E HFGL EAY +TSPIR+Y D++ HR++KA + G Sbjct: 485 FYTPEGSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAELNGTHYKLPSLPTPGEAEAKM 544 Query: 518 --------------------ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK 557 + + + + R A RDV WL +++++ Sbjct: 545 AKRLSSRVVEPGQKPRKRSAAKEFQAWEAAGLHCSANERRADEASRDVEAWLKCKYMREH 604 Query: 558 AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG-TVQIKGET 616 G + FA + ++ G+ V L + L D + + Sbjct: 605 LGEE--FAGTVSSVTTFGVFVTLDAMYVEGLVHITELGG--DYFRFDEARQELRGERSGV 660 Query: 617 VYKVTDVIDVTIAEVRMETRSIIARPV 643 Y + + V ++ V ++ R I R V Sbjct: 661 RYGIGARVRVQVSRVDLDGRRIDFRLV 687 >UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=B0S130_FINM2 Length = 701 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 158/650 (24%), Positives = 273/650 (42%), Gaps = 33/650 (5%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEK---ER 70 ++ G ++ + F + D + FI + +H D+++ I EK Sbjct: 62 ITEQKAYPGTIQGSGSDFCYFIPDDENVDDIFIAKKDLNGAIHKDKVLVTITVEKKPNRS 121 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 + +++ + VG ++ D + G + K D V Sbjct: 122 PEGKVLQILSRETKKLVGTFDEAKGYGFVILDDKKYGFDVFV--QSGNKNGAKNNDKVVV 179 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD------ 184 ++ + P K ++ + + + DD + + L E P V + + Sbjct: 180 KLIKTPSKNHKNPEGVIVEVLGGKDDPGIDIYSIAKTFKLPYEFPKKVKQQAKEIEQHVD 239 Query: 185 --EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 E R D L V+ID + +D DDA+ + L V IAD + ++ + + LD Sbjct: 240 ESEKKSRMDFRDLLTVSIDGSDAKDFDDAISITKKGE-NFVLYVHIADVSHYVKKNTALD 298 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 K A R + Y+ IPMLP ELS+ +CSL NE R L +M +S G D +F+ Sbjct: 299 KEAFRRGTSVYMLDRVIPMLPVELSNGICSLNPNEDRLCLTIKMEISPTGKTLD-YKFYE 357 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I S +L+Y VSD+LE+ D E E + + + L+ ++ + R + D P Sbjct: 358 SVINSDYRLIYKNVSDFLED-IDNPYEDEKLTDNLLLMKELYEILSARRKKRGSIDFDFP 416 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + + IL E +V+D+ + RRI N+++EE M+ N A +Y VH D Sbjct: 417 ETKIILDENSKVIDVTKDERRIGNKLIEEFMLITNETVASHFGYLDRPFLYRVHEEPDEE 476 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEP 481 + +L G H+ + + + + ++ ELD +P L S + R AE S P Sbjct: 477 KVNTFKRILSNFGYHLKGKNLYS-KDYQRILNELDGKPEKPLLASLLLRSMQKAEYSENP 535 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-------ITVQMAER 534 HFGL Y +TSPIR+Y D+ HR++K I + T + E I Q + Sbjct: 536 SIHFGLASMFYTHFTSPIRRYPDLFIHRIVKNFINHKPDTNNEKEFMKYIKDIAKQCSAT 595 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R AER+ D A +++ + F I +++ G+ V+L DN + + Sbjct: 596 ERRAEEAEREAIDMKSAEYMQQHIDEE--FEGIISSLTKFGIFVQL-DNTIEGLVQFQSM 652 Query: 595 HAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + D V ++N TV + + Y + + V + + R I V Sbjct: 653 --IDDYYVFDEKNYTVYGERTKKSYHIGQKVRVKVINSDKDKRQIDFEFV 700 >UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RHS0_PORG3 Length = 731 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 149/658 (22%), Positives = 268/658 (40%), Gaps = 34/658 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRIIAVIHS 66 + + + + ++ G + G + + FI M GD++ + + Sbjct: 87 IERGRYRYNALGLIVIGTFERRFNGRNSFIPEGGGTPIFIAERNSAHAMDGDKVKVQLFA 146 Query: 67 EKER--ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 ++ A E++E FVGK+Q D +V + L + I K Sbjct: 147 KRRGRAPEAAVIEIIEQKQATFVGKIQINRDFAFLVTEDRTLANDIFIPKDN--LGNAKN 204 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 GD + + P + ++ E+ + D+ LA L P V Sbjct: 205 GDKVIVRILEWP-EQSKNPIGEVQAVLGPAGDNDAEMNAILAEFGLPYVYPQEVEEAADR 263 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 +E RED ++ TID +D DDA+ + L DD ++ V IAD + ++ Sbjct: 264 LDGKITEEELARREDFRSVLTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVT 323 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 EG +D+ A RA + YL IPMLP L +DLCSLR +E + +C ++ + + D Sbjct: 324 EGGIIDQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLD 383 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 + I+S + Y++ +E E + L ++ QR E R + Sbjct: 384 -YRICHSVIKSDRRFAYEEAQAVIETGEG------DCKEAILKLNELAQRLREERFQNGA 436 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD-----KLGFG 411 + +R + RF + EKG L ++ + + AN+++EE M+ AN AR + + + Sbjct: 437 IAFERKEVRFEIDEKGRPLGVIVKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTF 496 Query: 412 IYNVHMGFDPANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQPTG-FLDSRI 468 +Y +H DP + L+ ++ G + + L + +P + + Sbjct: 497 VYRIHDLPDPDKLETLSDFIRRFGYKLRTTGSNMEVSKSINSLLDNIQNKPEENLISTVA 556 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--TRPQDE 526 R + A ST+ H+GL + Y +TSPIR+Y D++ HRLL + G ++ +E Sbjct: 557 IRSMAKAIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLSGGSSVDKNDYEE 616 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + +L AER + F+ + G F I ++ G+ V L +N Sbjct: 617 KCKHSSAMEQLAASAERASIKYKQVEFMSEHLGK--VFDGVISGVTEWGLYVELKENMCE 674 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 IP L E + + Y + D I V +A+ ++ + + PV+ Sbjct: 675 GLIPIRCLDDDYYEYDDKNFC-LIGRRYRHRYSLGDAITVRVAQANLDRKQLDFEPVS 731 >UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13 RepID=B6BU65_9PROT Length = 723 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 165/656 (25%), Positives = 289/656 (44%), Gaps = 26/656 (3%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMH 56 M +D +L K + + G V+ G+GFL D + F+ +M KV H Sbjct: 72 MRRDGQILKNRKDVFCIAEKINCISGKVQGHPDGYGFLIPDELEHDDIFLNQKEMGKVFH 131 Query: 57 GDRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 DR++ I K + E++E F T VG+V + + + I Sbjct: 132 NDRVMVQISGLDRKGKAEGTIVEVLERFNTVLVGRVVQSYGVTIVAAEDKRIHQDIII-- 189 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 G + + GD E+ P + ++ + I DD + + L +HNL Sbjct: 190 PYGKDMDAVPGDIVEVEITTQPAMNIK-PMGQIIEVIGKLDDSGIEIEIALRKHNLPFRF 248 Query: 175 PDGVATEMLD-------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 + E+ + R DL F+TID + +D DDA++A+ + +L+V Sbjct: 249 DKKIDKELEKISDISDGDLKDRIDLRDNFFITIDGETAKDFDDAVYAENHKE-FFKLLVG 307 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ EGS LDK A R + Y P IPMLP +LS+ LCSL + R V+ M Sbjct: 308 IADVSHYVKEGSALDKEAFDRGNSVYFPRRVIPMLPEKLSNKLCSLNPHVDRLVMIADMV 367 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 ++ G ++ + EF+ A I SK +L Y V + + + + + + + L + + Sbjct: 368 ITKKGEVQ-SYEFYPAVINSKHRLTYTLVDQLIFQKQNQKEHPKELIQHLNTLKSVYEVL 426 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 E R+ + DR + + + E G++ DIV R A+R++EE M+AAN+ AA L K Sbjct: 427 SEARNKRHAIEFDRIESQILFDEGGKIKDIVPLTRNEAHRLIEECMLAANVSAADYLLSK 486 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDS 466 G++ H + L ++L +H++ + + +L ++ + L + Sbjct: 487 KI-GLFRNHEKPKDEKLEILKSVLSDFKVHMEGGLSPVVMDYVELINKIKNKENFQMLQT 545 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-QD 525 I R A + HFGL + Y +TSPIR+Y D++ HRL+K+ + + + Sbjct: 546 MILRSMQQANYGSVNKGHFGLAYDKYTHFTSPIRRYPDLVVHRLIKSFLNKKRLKTDNLE 605 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 I + R A RDV +WL ++KD+ G +F I ++ G+ V + Sbjct: 606 SIGNHCSSTERRADEATRDVENWLKCFYMKDRIGE--KFDVVISSVTNFGIFVEISRLHI 663 Query: 586 IAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 + L D V ++E + K + +++ D + V + V +E + Sbjct: 664 EGLVHVTELG--NDYFVFNKEKQMLEGEKTKKKFRLGDELAVKLIRVDLELGKMDF 717 >UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KPF2_CLOPH Length = 716 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 151/650 (23%), Positives = 266/650 (40%), Gaps = 34/650 (5%) Query: 18 QTPRAEGVVKATEKGFGFLEVDAQK---SYFIPPPQMKKVMHGDRIIAVIHSE--KERES 72 G+ T +GFGF++++ ++ FIP + K ++ DR+ I E R Sbjct: 69 NGNIKTGIFSGTTRGFGFVKIEGEENEEDIFIPESETKGALNKDRVQIAIFEEQSGRRRE 128 Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 ++E +T VG Q + ++ D+ + + G + ++ Sbjct: 129 GAVISILERNVTELVGTFQKSKNFGFVIADNTKFNSDVFI--PKEHTKGAVNGHKVLVQL 186 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--------D 184 + + ++ ++ + I +D V + + L E PD V ++ Sbjct: 187 TDYGSET-KNPEGKIIKIIGHINDPGVDVVSVILENGLPTEFPDEVMKQVERIGEEVSSA 245 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 + R DL L VTID +D+DDA+ D QL V IAD + ++ E S LDK Sbjct: 246 DIGGRVDLRNLQTVTIDGEDAKDLDDAITLSK-KGDIYQLGVHIADVSNYVTEDSPLDKE 304 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A R + YL IPMLP +LS+ +CSL A R L+C M + G + + Sbjct: 305 ALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGSDRLALSCMMEIDEKGNVVGH-RIAETV 363 Query: 305 IESKAKLVYDQVSDWLENTGDWQ-PESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 I ++ Y V +E+ + + E + + L+ ++ E R + D P+ Sbjct: 364 INVDRRMTYTSVKKIIEDHDEAEIEEYKELVPMFELMLELADILREKRRKRGSIDFDFPE 423 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + IL G DI R A +I+E+ M+ AN A + +Y H D Sbjct: 424 SKIILDSDGRPTDIKPYERNKATKIIEDFMLIANETVAEDFFWQELPFVYRTHENPDLEK 483 Query: 424 ADALAALLKTHGLHV-DAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFAEISTEP 481 L+ + G + ++ + KL ++D +P L SR+ R A+ +T Sbjct: 484 IQKLSVFINNFGYTMRIGQDEIHPKELQKLLIKIDGKPEEALISRLTLRSMKQAKYTTTC 543 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-------TATRPQDEITVQMAER 534 HFGL + Y+ +TSPIR+Y D+ HR++K ++G +E+ Q + Sbjct: 544 DGHFGLSTKYYSHFTSPIRRYPDLQIHRIIKENLRGGLKEKRINHYESILNEVARQSSLA 603 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R +ER+V ++ G F I ++ GM V L N I + Sbjct: 604 ERRADESEREVEKLKKVEYMSQFIG--QTFEGVISGVTSWGMYVELP-NTVEGMIRLADM 660 Query: 595 HAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 H D + +E+ + + +YK+ + + + + + R+I V Sbjct: 661 HD--DYYIYDEEHYLLTGEHTKKIYKLGEAVVIRVEDTDKLMRTINFSIV 708 >UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_DEIGD Length = 1182 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 152/674 (22%), Positives = 267/674 (39%), Gaps = 45/674 (6%) Query: 3 QDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDR 59 + ++ + L G +A+ GFGF+ D + +++ P + +GD Sbjct: 300 RTGEVIRTRRRTYGLPEAMSLVRGRFQASPTGFGFVIPDAGGEDFYVAPEDTLEAWNGDT 359 Query: 60 IIAVIHSEK---------------ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHP 104 ++ + A +V+ VG ++ + D P Sbjct: 360 VLVRMEGRGDSGRSPGPRRGQRGDGSPRASVARIVQRAYRHLVGTLEFSKGHPILKADDP 419 Query: 105 LLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVT 164 + I G VAE+ G+ + ++ + + DD Sbjct: 420 RARHRILLLPEGLEGLAS--GARVVAELYWPEQTGEDEVFGQVIRVLGEQDDPATETEAV 477 Query: 165 LARHNLEKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKA 216 + ++ L E P V E + + R DL + T+D +D DDA+ + Sbjct: 478 IVKYGLRGEFPADVLEEANAIPTRIPPESLVGRLDLREFNIFTVDGRDAKDFDDAIHIQP 537 Query: 217 LPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 276 P+ + V IAD + ++ EG+ LD+ A RA + YLPG +PMLP LS+ +CSL Sbjct: 538 TPEGTFVVGVHIADVSHYVREGTPLDQEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPF 597 Query: 277 EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQ 336 E R + + LSA+G I D ++ + I SKA+L YD+V + E T + + Sbjct: 598 EDRLTVTALIELSAEGDILD-VKLAPSVINSKARLTYDEVQAYSEATSTLPEHARHLEGD 656 Query: 337 VRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAA 396 + LL +I + + R + + + +G G + I A ++E+ M+ A Sbjct: 657 LHLLLKITSKLRQKRLREGSLDFKLREVKVDVGPDGRMELIPIHEET-ARGMIEDLMLLA 715 Query: 397 NICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL 456 N A L ++ ++ +H A + GL E T + + + + Sbjct: 716 NKVVAHYLIERGIPTLFRIHEEPTLQRFQEATAAIARLGLAFPGGE-PTPQAYQAVLKAV 774 Query: 457 DAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 P +++ + R A+ + E HFGL Y +TSPIR+Y D+ HR+LKAV+ Sbjct: 775 RGTPRESVVNTLLLRSLQQAKYAGENLGHFGLAFAEYLHFTSPIRRYPDLFVHRVLKAVL 834 Query: 516 KGE---------TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA 566 G+ + +ER R AERD+ + A++ ++ G RF+ Sbjct: 835 SGDLKAGSRAVAELRSQLPAMGDHTSERERKAAEAERDLTKYYQAKWAQEHLGE--RFSG 892 Query: 567 EIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDV 626 + + G+ V L DNG + L + G +++ D I V Sbjct: 893 NVTGVVSSGLFVAL-DNGVEGKLHISNL-DDDYYIYLEDAQMLRGRSGGRTFRLGDPITV 950 Query: 627 TIAEVRMETRSIIA 640 TI++V R I Sbjct: 951 TISQVNPLARQIDF 964 >UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZA7_DEIDV Length = 1123 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 149/678 (21%), Positives = 270/678 (39%), Gaps = 45/678 (6%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHG 57 + + ++ + L G +A+ GFGF+ D + Y+IP Q + +G Sbjct: 231 LVESGTVVRTRRRTYGLPEAMSLVRGKFQASAAGFGFVVPDSGGEDYYIPAEQTLEAWNG 290 Query: 58 DRIIAVIHSEKER---------------ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD 102 D ++ + + A +V+ ++ VG ++ + + PD Sbjct: 291 DIVLVRMEGRGDSGRGGGPRRGQRGDGNPRASVVRIVQRAYSKLVGTLEFHHGHPILKPD 350 Query: 103 HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWW 162 + I + G V E+ G+ + ++ + + DD Sbjct: 351 DHRARHRILVLPE--GLEGLQAGARVVTELFWPENTGEDEVFGQVVRVLGEQDDPETETE 408 Query: 163 VTLARHNLEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFA 214 + + L E P V E + + R DL + T+D +D DDA+ Sbjct: 409 AVIVKFGLRGEFPGEVMAEAAAIPTEIPAEALVGRLDLREFNIFTVDGRDAKDFDDAIHI 468 Query: 215 KALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274 + P+ + V IAD + ++ EG+ LD A RA + YLPG +PMLP LS+ +CSL Sbjct: 469 QPTPEGTFVVGVHIADVSHYVREGTPLDDEAYARATSVYLPGRVLPMLPEHLSNGVCSLV 528 Query: 275 ANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA 334 + R + + LSA+G I D ++ + I SKA+L YD+V + E T + + Sbjct: 529 PYQDRLTMTALVELSAEGDILD-VKIAPSVINSKARLTYDEVQAYSEATATLPDHARHLE 587 Query: 335 EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMI 394 + LL +I + + R + + + +G G + I A ++E+ M+ Sbjct: 588 GDLHLLLKITSKLRQKRLREGSLDFKMREVKVDVGPDGRMELIPIREET-ARGMIEDLML 646 Query: 395 AANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRR 454 AN A L + ++ +H ++ + GL E T + + + Sbjct: 647 LANKVVAHYLLQREIPTLFRIHEEPTLQRFQEVSQAIGRLGLAFPGGE-PTPQAYQAVLK 705 Query: 455 ELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 ++ P +++ + R A+ + E HFGL + Y +TSPIR+Y D++ HR+LK Sbjct: 706 QVRGTPRESVVNTLLLRSMQQAKYAGENLGHFGLAFDEYLHFTSPIRRYPDLMVHRVLKG 765 Query: 514 VIKGE---------TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRF 564 V+ GE + ++R R AERD+ + A++ ++ F Sbjct: 766 VLGGELKAGNREVAKLQGRLPAMGDHTSDRERTAAEAERDLTKYYQAKWAQEHLQE--TF 823 Query: 565 AAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVI 624 A + + G+ V L DNG + L + G +++ D + Sbjct: 824 AGNVSGVVASGLYVAL-DNGVEGKLHISNL-DDDYYVYIEDAQMLRGRSGGRTFRLGDSV 881 Query: 625 DVTIAEVRMETRSIIARP 642 VTI+ V R I Sbjct: 882 TVTISAVNPMARMIDLTL 899 >UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETS7_AMOA5 Length = 718 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 157/651 (24%), Positives = 269/651 (41%), Gaps = 38/651 (5%) Query: 16 HSQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSE----KER 70 + P G V G+ ++ V D Q+ + + + GD + I + K Sbjct: 82 IDKLPYVVGKVDYVNPGYAYVVVGDGQQDVLVRQKDLLYALDGDVVKVAITKQENGTKGH 141 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 E++E ++VG VQ + ++P + I R + K D V Sbjct: 142 PVGRVVEILEQNKNKWVGTVQQQGSVTFVLPISRRMHYDIFVRPEN--LKKAKHNDRVVV 199 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE--------M 182 E+ + P ++ + + ++ V +A NL + P+ V E Sbjct: 200 ELVKRPTT-SKNPEGRIIEVFGPMGENDVEIHTIMAEFNLPTQFPENVLAETSAISIDIP 258 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 +E R+D + +TID +D DDAL K LP+ +++ V IAD + ++ E S +D Sbjct: 259 KEEIAARKDFREVFTITIDPEDAKDFDDALSLKILPNGHIEVGVHIADVSYYVQENSLVD 318 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A R + YL IPM+P LS++LCSL+ +E RP + L G++ F Sbjct: 319 QEAFERGTSVYLVDRTIPMIPERLSNELCSLKPHEDRPAFSAVFELDKQGSLHHEW-FGE 377 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 I S +L Y++ + ++ EQ+ L + ++ R + D P Sbjct: 378 TVIHSDQRLSYEEAQQAITQPT------HSLHEQITTLNNLAKKLRADRFKSGAINFDTP 431 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR-----DKLGFGIYNVHM 417 +F L ++G L I+ + ++R++EE M+ AN A +R + +Y H Sbjct: 432 SVKFQLDKQGRPLSILPKVSEDSHRLIEEFMLLANKRVALHVRRMKQGKQFPTFVYRTHD 491 Query: 418 GFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAE 476 + A +K G + AE L L +P + + R + A Sbjct: 492 QPNLERLGDFALFVKQFGYSIKAEPQEIAQSINVLSEGLAGKPEAHIIQTLAIRLMAKAL 551 Query: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP--QDEITVQMAER 534 +TE PHFGL E Y +TSPIR+Y D++ HRLLK +KGE ++ +ER Sbjct: 552 YTTEAKPHFGLAFEHYTHFTSPIRRYPDLLVHRLLKKYLKGEFYFEEAIYEKKCQHASER 611 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R+ AER + ++ G R I + G+ V L+D I L Sbjct: 612 ERVAADAERASIKYKQVELMQTLQGK--RLKGVISSLMEWGIYVELLDILCEGMIRLSDL 669 Query: 595 HAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 D+ + G V + + VY++ D+++V I + R++ V Sbjct: 670 ---TDDYYVLDKKGFKLVGERTKKVYQLGDLVEVEIKACDISKRTVDLWLV 717 >UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=B9XG02_9BACT Length = 740 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 158/656 (24%), Positives = 267/656 (40%), Gaps = 31/656 (4%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIH 65 + + L + G ++ +G GFLE D K + +P + DR++ Sbjct: 52 IKGNRFILPQEADLIPGRIRINRQGKGFLEADDPKLPTIVVPEHATGTAFNNDRVLVRRD 111 Query: 66 SEKERE--------SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 + + ++E T+ VG Q N L ++PD P + I R Sbjct: 112 VRYRGRSRIFQEEETGKVIRILERERTQLVGTFQSSNRFLYVIPDDPRIPHDIYVTEPRD 171 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 + GD V E++ + + + E+ + + D+ V L ++NL P Sbjct: 172 VGRRPNLGDKVVVELKLWESR-ELNPEGEIIEVLGAPDEEGVDMLSVLRQYNLPLHFPKT 230 Query: 178 VATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 V E + RED A VTID +D DDA+ +A P+ +L V IA Sbjct: 231 VLQEAHAIGNQIDERDIAGREDCRAHTVVTIDPVDAKDFDDAICLEAAPNGHWKLWVHIA 290 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D + ++ GS LD+ A+ R + YL IPMLP LS++LCSL+ R LS Sbjct: 291 DVSHYVKVGSALDEEAQKRGNSTYLVDRVIPMLPEALSNELCSLKPGVERLTKCVEFLLS 350 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGE 349 A+G + + F+ A I SK + Y++V + L+ I E + + QR Sbjct: 351 AEGKVIRS-RFYPAVIHSKRRFTYEEVLEALQRKPAG-----PIEEMLHHANTMAQRLRR 404 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 R + D P+ + L E+G++L I I+++++EE M+ AN A L Sbjct: 405 ARMQAGSLDLDFPESKIRLDEQGKILRIDRVENDISHQLIEEYMLLANEAVAGKLMALDR 464 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRI 468 +Y +H D + + KL ++L++ P L Sbjct: 465 QTVYRIHEPPDDKRLQEFRE--DVLSHQIQCGNLTNRHEVQKLLQKLNSLPIGPALKIGF 522 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEIT 528 + A + EP H+GL Y +TSPIR+Y D++ HR L + + A + Sbjct: 523 LKSLMRARYAVEPLGHYGLAKAKYTHFTSPIRRYADLVVHRSLFQKGREKVAAESLRNVA 582 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKA--GTDTRFAAEIVDISRGGMRVRLVDNGAI 586 +++ R + AERD D +L+ + G R+ + D+ G V + G Sbjct: 583 EHISDTERNSADAERDSKDVKLFAYLQSQLDSGRPQRYPGLVTDVRNFGFFVDVPGLGMS 642 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 +P L + S N + + V+K+ D ++V I +V + + R Sbjct: 643 GVVPLSTLPDDFFQFD-SNRNQLIGRRSRRVFKLGDKVEVQIHKVDKFKKQVDFRL 697 >UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKY3_THEYD Length = 695 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 159/667 (23%), Positives = 275/667 (41%), Gaps = 40/667 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVD--AQKSYFIPPPQMKKVMH 56 + +L K + G +A + GFGF+ D + FIPP MH Sbjct: 43 LLSQGKILRNRKGLYLTIKEAKLITGFFEAHKNGFGFVIPDSPKETDIFIPPHATMGAMH 102 Query: 57 GDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 GDR++A + ++++ ++E R VG V+ I P + I Sbjct: 103 GDRVVARV-EQRKKREGRIVRILERATRRVVGIVEKSGPIFYIQPRKKNINQQIVIA--- 158 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 + + G +AE+ + + A++ + + + L K+ Sbjct: 159 SGDIKVNPGSLVLAEIVTYQAVN-KPLVAKILKVFEKPKTPKEDIEILTYEYELPKKFSK 217 Query: 177 GVATEMLD---------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V+ + + R DL L VTID + +D DDA+ K + + L V Sbjct: 218 EVSNFSEELSLKGISKKQFKNRVDLRELPTVTIDGENAKDFDDAVSIKKIRNG-FILWVH 276 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + +I S +D A+ R + YLP IPMLP ELS++LCSL R M Sbjct: 277 IADVSHYIKWNSTIDGEARHRGTSVYLPDRVIPMLPPELSENLCSLLPKIPRLTFTVEMH 336 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAEQVRLLAQICQR 346 S G ++++ F+ + I++ ++ Y V L + + + + +A++C+ Sbjct: 337 FSNSGERKESL-FYPSIIQTAERMTYTSVKKILIDKDKEEIKRYKPLVPYFEKMAELCEI 395 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D P+ +L KG+ I+ R +A+ I+EE MIAAN A L Sbjct: 396 LKNKRKKRGSLDFDLPEPEVLLDIKGDPHAIIKAERNLAHFIIEEFMIAANEAVAEFLYS 455 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLD 465 +Y VH + + ++K G+ ++ L F + + P ++ Sbjct: 456 NNIPSLYRVHEEPETNKIQYITRIVKNLGI---LKQDLKPSDFHEFIEIIKGTPYEEIVN 512 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-- 523 I R A S+E HFGL E Y +TSPIR+Y D++ HR+LK ++ T+ Sbjct: 513 YLILRSLKQARYSSENVGHFGLASECYTHFTSPIRRYPDLVVHRILKEFLQKGKITKERQ 572 Query: 524 ------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 I + + R ERD + F+KDK G + F + ++ G+R Sbjct: 573 KELKEILPHIAIHSSRMERRADEVERDAIQIMRVWFMKDKVGEE--FEGRVTMVTPEGLR 630 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMET 635 VRL + F+ + D+ E + +K + + + ++V +++V +E Sbjct: 631 VRLEEYYIEGFLHLSHM---IDDFYQFDEKRYCLIGLKKKRKFTIGTKLNVRVSKVSLEE 687 Query: 636 RSIIARP 642 R II Sbjct: 688 REIIFDL 694 >UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VV97_DYAFD Length = 795 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 147/655 (22%), Positives = 266/655 (40%), Gaps = 41/655 (6%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE------ 67 L ++ G V+ KGF F+ ++ + ++ + GD + S+ Sbjct: 92 LKTKPQGLTGRVERVNKGFAFVVIEGREDDIYVDLELLNGAWDGDIVQVQPLSKNLRSKG 151 Query: 68 -----KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 + R ++VE VG ++ + PD+ L D I + Sbjct: 152 RGDSGRNRTEGRVTDIVERSNAEIVGIIEINPRFAVVQPDNKRLYDPIYLEPDQV--GAA 209 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 + GD + ++ + + E+ + ++ V LA L PD V E Sbjct: 210 RHGDKVIVKVTEWSTRRSQ-AEGEIVSVLGAAGNNDVEMHAILAEFGLPYHFPDEVEAEA 268 Query: 183 LD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 + R D+ + TID +D DDAL + L +D +++ V IAD + + Sbjct: 269 QKIPNKIVKKDLAKRRDIRDVLTFTIDPVDAKDFDDALSVRYLDEDVVEVGVHIADVSHY 328 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + G++L+K A RA + YL +PMLP +LS++LCSLR NE R + +++ G + Sbjct: 329 VLPGTELEKEALRRATSVYLVDRTVPMLPEKLSNNLCSLRPNEDRLAFSAIFEITSKGKL 388 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 F I S + Y++ L++ P+ ++ L ++ + + R Sbjct: 389 LKEW-FGRTVIHSDRRFTYEEAQAVLDSGEGDFPK------ELDTLNKLAKIFRKERFKK 441 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK-----LG 409 + + P+ RF L +G L I + R +N+++EE M+ AN A + Sbjct: 442 GAINFETPEVRFRLDPEGRPLGIYTKERHDSNKLIEEFMLLANKRVAEYVYSLSKGEDKN 501 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDAQPT-GFLDSR 467 +Y +H DP A + GL ++ EE + +++ +P ++S Sbjct: 502 TMVYRIHEAPDPDRLQTFANFVAKLGLKLEVEEESKIAKSMNAMLAKVEGKPEQNLIESL 561 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--TRPQD 525 R + A STE HFGL Y+ +TSPIR+Y D++ HRLL+ + G + Sbjct: 562 AVRTMAKARYSTEDLGHFGLAFRRYSHFTSPIRRYPDVMAHRLLQHYLDGGANVDQETYE 621 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 + +ER RL AER + ++ + F I ++ G+ V + + + Sbjct: 622 RASKHSSERERLAAEAERASIKYKQVEYMS-MMDPEKEFGGIITGVTEFGIFVEITETAS 680 Query: 586 IAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 I L EL + + + +Y D + V + E + RS+ Sbjct: 681 EGLIRMTDLGDDYYELD-KENYRVIGQHTKKIYAFGDAVKVKVKETNLARRSMDL 734 >UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHY2_RHOM4 Length = 751 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 157/659 (23%), Positives = 272/659 (41%), Gaps = 36/659 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS--YFIPPPQMKKVMHGDRIIA--- 62 + + + R EG+++ +G+GF+E++ Q+ +I M + GDR++ Sbjct: 78 VKGGRYTYERRPYRVEGILRVHPQGYGFVEIEGQEDEDIYISEAHMGTALDGDRVLVGLA 137 Query: 63 VIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 R E +++E + VG + +VPD P L I R + Sbjct: 138 APARGDRRREGEVLKVLERRRKQAVGTFYPRGAYAFVVPDDPRLTRDIYV--PREAFNGA 195 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 + GD V + R S + + + D V ++ P+ E Sbjct: 196 RAGDKVVVSIDRFDDPKA-SPEGRVLEVLGPASDPRVQVLALALSKDVRTGFPEAALKEA 254 Query: 183 ---LDEGLVRE-----DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 D RE DL TID + +D DDAL + LP+ +++ V IAD + + Sbjct: 255 ERIPDTIPEREYRRRLDLRDRAVFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYY 314 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + GS LD+ A R + YL IPMLP +LS+ +CSLR E + + M L+ + Sbjct: 315 VRPGSALDEEAYQRGTSVYLVDRVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARV 374 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 + I S+ + Y++ ++ +AE VRL ++ Q+ + R Sbjct: 375 V-RYQIRETVIHSRQRFTYEEAQAIIDGA------DHPLAEPVRLAHELAQKLRKARMEA 427 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK--LGFGI 412 + D P+ + L E G + I + R A++++EE M+ AN A + + + Sbjct: 428 GAIDFDLPEVKVELDEAGNPIRIYRKERLAAHQLIEEFMLLANRLVAETIGKRTEAPPFV 487 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTL--DGFCKLRRELDAQP-TGFLDSRIR 469 Y +H D LA ++ G H++ E T+ +L + + P ++ Sbjct: 488 YRIHDRPDAEKIRQLAQYVRVFGYHLELTEDGTVSSKALNELLQHVKGTPEEPVIEEAAL 547 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG--ETATRPQDEI 527 R + A ST+ H+GL + Y +TSPIR+Y D++ HRLLK +K + DE+ Sbjct: 548 RAMAKARYSTQNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLKQYLKKAEKAPVVDADEL 607 Query: 528 ---TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 +ER R AERD + ++++ G RF + ++ G+ V L D Sbjct: 608 EARCRHCSERERAAEEAERDSVRFKQVQYMQQHVGE--RFRGVVSSVTNFGVFVELEDVL 665 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + E + + Y+ DV++V + TR I R V Sbjct: 666 VEGLVHVRDMGDDYYEYD-ERRYTLRGMYSGKRYRPGDVVEVVVVRADPATRQIDLRFV 723 >UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVE2_DICNV Length = 752 Score = 607 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 161/663 (24%), Positives = 290/663 (43%), Gaps = 29/663 (4%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHG 57 M L+ + + + G V A +G+GFL V+ FIPP M+++MHG Sbjct: 71 MIAAGQLMRNRQGFIGVSHKMDLVSGYVIAHPEGYGFLNVEGDIDDGFIPPQYMRELMHG 130 Query: 58 DRIIAVIH--SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D+I+A I + R+ P E+++ R VGK+ +++P++ L I Sbjct: 131 DKILARIKHVDGQGRKDYVPVEILQRGQKRVVGKLLNNQGIFSVIPENRRLTQPIMI--P 188 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + + +AE+ +P K + + + + + + + +N+ Sbjct: 189 KAALGDAVANQIVLAEITAYPSKHQQ-AIGTIVKVLGDEMAAGLEVAIAIENYNIPNHFS 247 Query: 176 DGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 D V ++ + + R DL L VTID S D DDAL+A+ + +L VA Sbjct: 248 DAVRAQIEKMPDALQEADYVDRLDLRYLPMVTIDGISARDFDDALYAEKRGE-NYRLFVA 306 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ S LD+ A R + Y P +PMLP +LS+ LCSL + R L C +T Sbjct: 307 IADVSYYVKPDSPLDEEAYARGTSVYFPDRVVPMLPEKLSNGLCSLNPHVDRLCLVCELT 366 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-EAIAEQVRLLAQICQR 346 ++ G I+++ +F A I+S A+L Y+ V L ES + + L + Q Sbjct: 367 ITPSGQIKNS-KFHQAVIQSHARLTYETVEKILFLQDPLMQESFAQLRAPLEDLRVVYQI 425 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D + F+ +G++ I A + +++EE M+ AN+ AA+ L+ Sbjct: 426 LRTAREKRQAIRFDFKEAEFLFDSEGKIESIQARNELESYQLIEECMVIANVAAAKFLQK 485 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLD 465 G+Y VH + + G + + +T++ F L ++ + + L+ Sbjct: 486 HKLIGLYRVHDKPSAERFEKVFNYFAKLGFKTPSFDTVTVEHFAHLLKKAEGRQDRALLE 545 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT---- 521 I R A S+E HF L L YA +TSPIR+Y D++ HR ++ ++ E++ Sbjct: 546 KMILRSLPQALYSSENRGHFALALSHYAHFTSPIRRYPDLLVHRAIRHCLQEESSEVSLY 605 Query: 522 --RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 DE+ + R A RD D+L F+ + G + F EI ++ G+ + Sbjct: 606 SLEKMDEMAKHCSMTERRADDASRDAMDFLKCEFMSHRIGDE--FFGEISSVTSFGLFIT 663 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 L + + L + + + + Y++ D + + + +V +E + I Sbjct: 664 LDEFFIDGLVHVSTLPSDYYHYD-ADNVRLLGERSGHSYQLMDKVRIRVVQVNIEDKKID 722 Query: 640 ARP 642 Sbjct: 723 FEL 725 >UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU Length = 756 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 155/668 (23%), Positives = 275/668 (41%), Gaps = 38/668 (5%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHG 57 + + ++ L +Q G + ++GFGF+ V+ +K FI P +K + Sbjct: 44 LEDEGKVVRNKYNHYYLPNQFGMILGTLTINKRGFGFVVVEDQEKDIFISPDDLKDAFNK 103 Query: 58 DRIIAVI--HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D ++ + HS++ER +++ TR VG+++ + D P+ I Sbjct: 104 DTVLVELKKHSDEERPEGRVIRVIKRGQTRLVGEIKKGKRDCFVDVDDPMFDKPIFV--D 161 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 R H G E++ + ++ + + +D + + H+ E P Sbjct: 162 RAHLHGAMPGHKVQVEIKTY----KPILKGDVVKILGHRNDPGIDILSIVYEHDAPVEFP 217 Query: 176 DGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V ++ + + R DL VTID +D+DD + K L + L V Sbjct: 218 QAVYDQIENIPDSLEGIDIGQRIDLRDEVVVTIDGDDAKDLDDGISLKKLDNGHYHLGVH 277 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ E S LDK A R + YL IPMLP +LS+ +CSL + R ++C M Sbjct: 278 IADVSYYVTEESPLDKEAFARGTSIYLADRVIPMLPHKLSNGICSLNPHVDRFTISCFME 337 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 + +G + ++ + A I S ++ Y V+ L+ Q + + + L+ ++ Sbjct: 338 IDENGEVVEH-DIVPAVINSTERMTYTNVNKILDGDQTLQLQYSHVKDLFFLMQELAMIL 396 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + + D + + ++ KG D+V R ++RI+EE M+ AN A + Sbjct: 397 QAKKARRGAIDFDVKEAKVLVDSKGNTTDVVLRERGASDRIIEEFMLLANETVAEHFKWL 456 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTG-FLD 465 IY VH P + + KT G + E + + P + Sbjct: 457 ELPFIYRVHENPKPKKLLQFSGIAKTLGYTIKGSLENVYPGELSNIIEVSKDTPEHTIIA 516 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-- 523 + + R A + HFGL E Y +TSPIR+Y D+I HRL++ + R Sbjct: 517 TLLLRCMQKARYDEQCLGHFGLADEYYTHFTSPIRRYPDLIVHRLIRKYMFENRLDRRTI 576 Query: 524 ------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 EI +Q + R R M ER+V D A F++ + G + F I ++ G Sbjct: 577 MHYQELMPEIALQTSAREREAIMIEREVDDMKIAEFMEKQIGEE--FEGIISSVTNFGFF 634 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGT--VQIKGETVYKVTDVIDVTIAEVRMET 635 V L DN + L D+ E + + V+K++D + V ++ + Sbjct: 635 VEL-DNTIDGLVHVTDL---TDDFYFFDEKNIRYIGQRTGKVFKMSDRVKVRVSSASKKD 690 Query: 636 RSIIARPV 643 +S+ V Sbjct: 691 KSVDFEIV 698 >UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2D1_SALRD Length = 666 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 156/659 (23%), Positives = 268/659 (40%), Gaps = 41/659 (6%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVIH---S 66 K + + T + GV++ +KGFGF++ D + +FI M + +HGD + + Sbjct: 16 RKYKTKATTRQHTGVLQCHDKGFGFVQATDQDEEFFIREANMGEALHGDLVRVAVAARAP 75 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 E ++ E E+VE T VG ++D + PD + + A K+G+ Sbjct: 76 EDKKRECEVLEVVERRCTEVVGTFHHRSDFAFVEPDDQRILQDVYV--APDAFSGAKDGE 133 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--- 183 + + R + S + + I DD V +++ + PD V E Sbjct: 134 KVMVSIDRFDDRKA-SPEGRILRVIGPSDDPNVRVLSLAMSMDVKADFPDEVEAEAESIP 192 Query: 184 -----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 DE R DL TID +D DDA+ + L + ++ V IAD + ++ Sbjct: 193 VKIPEDEIERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVGVHIADVSHYVEPD 252 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 + +D A R + YL IPMLP +LS+ +CSLR +E + + M L+ +G + D Sbjct: 253 TAIDAEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVVD-Y 311 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 E I SK +L YD+ D++E + + + ++ + R + Sbjct: 312 EICETVIHSKERLTYDRAQDYIEGGYPDDKMAADVVQ----ANRLAKTITRRRMQEGAID 367 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR------------- 405 + IL + G +IV + R ANR++EE M+ AN A+ + Sbjct: 368 FGSDEVNVILDDDGTPTNIVRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRHRSNGT 427 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQPTG-F 463 D+ +Y VH D LA ++ + + L E+ QP Sbjct: 428 DEPLPFVYRVHDSPDSEEIQQLAEYVRVFDHELPLTDGNARSSDLGALIDEVQGQPEEQV 487 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--T 521 + R S AE + H+GLG + Y+ +TSPIR+Y D++ HRLLK KG + Sbjct: 488 IVRAALRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLLKRYAKGGSPADI 547 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 +E+ R AER+ ++K+ G + F + +++ G+ V + Sbjct: 548 EDLAARCEHCSEQERNAEEAERESVKLKQVEYVKNHVGEE--FDGVVSGVTKFGVFVEIT 605 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 D + ++ + T Y+ D + V +A +E R I Sbjct: 606 DLLVEGLVHVREMND--YYVYDESTYTLRGENNGTSYRPGDSVRVEVASASVEDREIDL 662 >UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN Length = 863 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 163/667 (24%), Positives = 282/667 (42%), Gaps = 43/667 (6%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVD------------AQKSYFIPPPQMKKVM 55 L + K G ++ GFGF+ D Q+ +IP + Sbjct: 56 LPEAKPAPKRGNKGFVGRLQVHPAGFGFVIPDALAPDQARLPPPEQRDLYIPKEFLGGAW 115 Query: 56 HGDRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 HGD+++A R + +++E ++ G+++ + ++PD P L + Sbjct: 116 HGDQVLAYPQPPGRDRRPWGKVAQVLERSRSKLTGRLEFRRGYAWVLPDDPRLPGKVKLE 175 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDR--SFYAELTQYITFGDDHFVPWWVTLARHNLE 171 ++G E+ P GD+ YA +Y+ DD + H+L+ Sbjct: 176 PE--GLAGLEQGARIAVEL-HFPQTGDKGGEIYATFLEYLGMADDPQSETRAVIVNHDLK 232 Query: 172 KEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQ 223 E E +E R D +L+ TID +D DDA+ + L ++ + Sbjct: 233 SEFDPEALAEAEAIPESIPPEEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYR 292 Query: 224 LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA 283 + V IAD + ++ EGS LDK A R + YLPG +PMLP +LS+ +CSL + R VL+ Sbjct: 293 IGVHIADVSHYVREGSALDKEAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLS 352 Query: 284 CRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQI 343 + ++ G + + F I SKA+L Y QV + E G E + + + LL ++ Sbjct: 353 VLVEITDGGRVLRH-SFREGVIRSKARLTYTQVQAFAEGKG-MPDEFKWLEPDLALLLEL 410 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 ++ R + + + +GE GE + ++ + A ++EE M+ AN A+ Sbjct: 411 TRKLKAKRVAAGALDFHFTEVKVDIGEAGE-IHLIPQTEPDARSLIEELMLLANRIVAKY 469 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG- 462 L DK +Y VH LAA L G + E + + ++++ +P Sbjct: 470 LSDKGLPALYRVHEDPTDMAYAKLAAQLSKLGYELPGME-PSPKAMQAILKQVEGKPEAP 528 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR 522 + + + R A + E HFGL E Y +TSPIR+Y D+I HR+LK +++ Sbjct: 529 MVSTLLLRSLKLARYAHENLGHFGLAAEHYLHFTSPIRRYPDLIVHRVLKTLMRRRLTPE 588 Query: 523 PQD-------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 + + + R R AERD+ + + + G RF + ++ G Sbjct: 589 KVEHWREVFPRMAEHTSSRERSAEAAERDLTKYYQCCWAELHKGE--RFGGVVSGVTGFG 646 Query: 576 MRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 + V L +NG + L E V + V + + ++ D ++V I V + T Sbjct: 647 VFVAL-ENGVEGMVRLSSLLDDHYEYV-EETLSLVGTRTKRRIRIGDPLEVVIQGVNLPT 704 Query: 636 RSIIARP 642 R I P Sbjct: 705 RQIELVP 711 >UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group II RepID=A3EPY9_9BACT Length = 744 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 164/654 (25%), Positives = 280/654 (42%), Gaps = 27/654 (4%) Query: 7 LLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRII-AVI 64 LL L + EG+ + G+GF+ + + + ++PP K MH D+++ + Sbjct: 63 LLKGGYAGLPDKLHFREGMFLSHPDGYGFVVTEGEREDLYVPPGATKGAMHQDKVLSVHL 122 Query: 65 -HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 + R + E++ + VG + + P P + + + Sbjct: 123 GTDHRGRSEGQVVEIISRSRSSVVGVLHELKGGYFLSPRDPKIPHEFLVVD--NGAEKLQ 180 Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML 183 EG+ AV ++ R+P G ++++++ D V + +A H+L PD V E Sbjct: 181 EGELAVLDILRYPEPGHI-PEGKISRFLGDPSDPSVDTDLVIATHHLSISFPDRVEAEAK 239 Query: 184 --------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 + R DL L+ +TID D DDAL PD Q+ + IAD A++ Sbjct: 240 RMAKEVAVEPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYV 299 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 GS+LDK A R + Y P +PM P LS+ + SL +E R + +S G + Sbjct: 300 LPGSELDKEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVL 359 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 ++ F + I S+ + Y +V L PES+ + +R L ++ + E R + Sbjct: 360 ES-SIFRSVIRSRLRATYSRVHPILAGESTDSPESKFSVQ-LRSLWKLAKNLREERFQNG 417 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + D P+ +L +GE +DI+ PR +++ +VEE M+ AN A L K +Y V Sbjct: 418 SLDFDLPEPEIVLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRV 477 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLD--GFCKLRRELDAQP-TGFLDSRIRRFQ 472 H P ++L L G+ + + + + P + + R Sbjct: 478 HETPSPEKTESLGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSL 537 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL---KAVIKGETATRPQDEITV 529 A P HFGL ++ Y +TSPIR+Y D+I HRLL + GE + P +++ V Sbjct: 538 KQARYDVYPLGHFGLAMDDYTHFTSPIRRYPDLIVHRLLDLPEGRPSGEGSFYPLEQVAV 597 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 Q +ER R + AER D RF+ G +F+ + ++ G V L D + Sbjct: 598 QASERERASVEAERMAVDLKKIRFMGQHIGK--KFSGSVSGVTGFGFFVELSDVLVEGLV 655 Query: 590 PAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 P L+ D V +++ + Y++ D ++V + V E I Sbjct: 656 PFSALND--DYYVYDEKHHLLRGETTRKTYRIGDRLEVVVVRVDNERLRIEFAL 707 >UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BNS1_9LACT Length = 775 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 155/673 (23%), Positives = 276/673 (41%), Gaps = 43/673 (6%) Query: 6 PLLAQLKQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVI 64 L K L+ +G +A +KGFGF+ V+ + FIP M GD + VI Sbjct: 55 ELNRNGKFGLNPLNQTLKGTYRANDKGFGFVTVVEGEPDIFIPRGDTMSAMDGDEVELVI 114 Query: 65 HS-----EKERESAEPEELVEPFLTRFVGKV--------QGKNDRLAIVPDHPLLKDAIP 111 + + + ++++ T+ VG + +V L Sbjct: 115 TEPADSYRQRSATGKIVQIIQRNTTQVVGIYTRFSSETAEDTGYCGEVVVKDKKLAGTRC 174 Query: 112 CRAARGLNHEFKEGDWAVAEMRRHPLKGDRS-FYAELTQYITFGDDHFVPWWVTLARHNL 170 GL+ +G + E+ ++ + +RS + + I + D + + L + ++ Sbjct: 175 LIRPNGLHP--VDGTVVIVELTKYTNEKNRSSLEGIVVKEIGYKDAVGMDILMVLQQLHI 232 Query: 171 EKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKL 222 E P V + ++ R+DL VTID A +D+DDA+ D Sbjct: 233 PTEFPQEVIDQANLVPEVITDEDRQGRKDLRGQLTVTIDGADAKDLDDAVALTKREDGTF 292 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 +L V+IAD + ++ E S +D+ A R + YL +PMLP+ LS+ +CSL +E R + Sbjct: 293 ELTVSIADVSYYVTENSAIDREAFERGTSVYLTDRVVPMLPQRLSNGICSLHPHEERLTM 352 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ 342 +CRM + GTI E F + I S +L Y V++ E + I + + + + Sbjct: 353 SCRMEIDRSGTIYQ-YEIFPSVIRSDMRLTYSLVNELYEKKEVEIQ--DEIQQMLLDMKE 409 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 + R + + + + I+ E+G +DI R +A R++E M+AAN A Sbjct: 410 LHHILERRRKERGAIDFETHEAKIIVDEQGAPIDIQIRERGVAERLIESFMLAANETVAM 469 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDA-QP 460 + K IY VH + G+++ + ++ K E+ Sbjct: 470 HYQRKNVPFIYRVHEQPQQEKMQRFLEFVTAFGINIKGTSDTISPKKLQKALDEVKGETY 529 Query: 461 TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV------ 514 + + + R A+ P H+GL E Y +TSPIR+Y D+I HR+++ Sbjct: 530 EAVVSTMMLRSMKQAKYDIIPSGHYGLAAEDYTHFTSPIRRYPDLIVHRMIRQYEGSGSF 589 Query: 515 ---IKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 + E + I Q ++ RL AER+V A F+ DK G + F + + Sbjct: 590 LSKQQEELNASKLERIADQSSKMERLAVQAEREVDAMKKAEFMADKIGQE--FEGIVSSV 647 Query: 572 SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 ++ GM V L N + ++ + + + Y++ D + V + +V Sbjct: 648 TKFGMFVELP-NTVEGLVHITHMNQDYFNFI-ESHLVLIGERTGVTYRIGDCVKVKLIKV 705 Query: 632 RMETRSIIARPVA 644 +E I A Sbjct: 706 DVEAHEIDFILAA 718 >UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_ALCBS Length = 828 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 178/689 (25%), Positives = 282/689 (40%), Gaps = 56/689 (8%) Query: 1 MFQDNPLLAQL--KQQLHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMH 56 M +D L+ K + S+ G V+ + GFGFL D Q F+ P QM+ VM Sbjct: 76 MLRDAQLVQNRNGKVGVVSRMDLIAGRVQGHKDGFGFLIPDDKTQGDLFLAPRQMENVMD 135 Query: 57 GDRIIA--VIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 GDR++ ++ ++ A E+ E T +G+ + I P++ + + Sbjct: 136 GDRVLVSNAGYNRFGKKEARIVEITERVATEVIGRYSREAGISFIEPENRRITKEVLIED 195 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 G+ GD A + ++P + D L + I D+ + V L R + Sbjct: 196 KNGIKPN--PGDHVRATITQYPSR-DHHVLVRLEEIIATPDEAGMEVEVALRRFEIPHVW 252 Query: 175 PDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 P+GV + R DL L VTID + D DDA++ + P +LIV Sbjct: 253 PEGVEAAAEKFGDKVPHEPKAHRVDLRDLPLVTIDDETARDFDDAVYVERRPRGGWRLIV 312 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 AIAD + ++ GS+LD+ A R + Y P IPMLP LS+ LCSL + R L C M Sbjct: 313 AIADVSHYVQPGSELDQEAAKRGNSVYFPNRVIPMLPEALSNGLCSLNPHVDRLCLYCDM 372 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE------SEAIAEQVRLL 340 +SA+G + F + S+ +L Y++V +E + + + + Sbjct: 373 KISANGRLT-RFIFREGVMRSRHRLTYNKVGAIIEEPESELAQDTVASLDDESLDMIWSF 431 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 ++ R + D D R I E ++ IV R +A+ ++EEAM+AANIC+ Sbjct: 432 HEMFLALRRRRAERGAIDFDSDDTRIIYDENKKIEAIVPVQRNVAHIMIEEAMLAANICS 491 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLD--GFCKLRRELDA 458 A++L +Y H L L GL + E F LR E+ Sbjct: 492 AKLLEKAGVPALYRNHEPPKEERLSKLQQFLGGLGLSIAWSEGAAPKPYVFQDLREEILE 551 Query: 459 QP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK- 516 +P + + + R S A+ E HFGL +AY +TSPIR+Y D++ HR ++ +I+ Sbjct: 552 RPDRNVIQTMMLRTMSQAKYEAENKGHFGLAYKAYTHFTSPIRRYPDLLVHRAIRFLIRS 611 Query: 517 -GETAT--------------------RPQDEITVQMAERRRLNRMAERDVGDWLYARFLK 555 GE I Q + R A RDV WL +F++ Sbjct: 612 NGEPNHVDNPGNLPEIPRQKILPYNQADMVAIGEQCSMTERRADEATRDVVSWLKCQFME 671 Query: 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIK 613 G F I ++ G+ V+L D + L + E Sbjct: 672 AHLG--QVFEGAISGVASFGLFVQLSDLHIDGLVHVANL---DSDYYHFDEVSLTLTGES 726 Query: 614 GETVYKVTDVIDVTIAEVRMETRSIIARP 642 + + D + V +A V E R I + Sbjct: 727 TGRQFGLGDAVTVCVAAVHTEDRKIDLQL 755 >UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVY9_9BACE Length = 710 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 158/660 (23%), Positives = 252/660 (38%), Gaps = 46/660 (6%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQK----SYFIPPPQMKKVMHGDRIIA----VIHSE 67 GV + T +GFGFL + K YFIPP GD++ A I E Sbjct: 4 KKTEEIITGVFQGTSRGFGFLVPEDGKSREDDYFIPPRATGGAWDGDKVQASPDPEIPWE 63 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + R +A + E G V+ L + PD L I G + G+ Sbjct: 64 EGRRTATVVRVTERANRFVTGTVEKLGRELWMRPDSDKLPGPIKIS---GKAKGVRIGEK 120 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 EM + L + + L + ++ E P V Sbjct: 121 IAVEMLGYGT-AKTPPMGALRETFGPAGNRESSTAAILYHYEIDPEFPPAVLDAAARAPR 179 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 D R DL +TID AS++D+DDA+ + + L V IAD + ++ E S Sbjct: 180 EVEKDALTGRTDLRNRIIITIDGASSKDLDDAVSLERDEQGRWVLGVHIADVSHYVQEKS 239 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD A R + Y IPMLP ELS+ +CSL R ++C MTL+ADG ED+ Sbjct: 240 PLDLEAWERGTSVYFADRVIPMLPVELSNGICSLNPGVDRLTISCFMTLAADGREEDHT- 298 Query: 300 FFAATIESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 + I S ++ Y+ + L D + I +R +A + + + R + Sbjct: 299 ICKSVIRSTERMTYEDCNKLLAGEDPDLEKRYNNILPMLRDMAVLARVLEKRRKLRGSLD 358 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 + + I E G+ +DI + + ++E M+AAN C AR L D+ +Y VH Sbjct: 359 LETSESYIICDEHGKPVDIKVRKQGESEALIESFMLAANECVARHLFDRHKPAVYRVHEK 418 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEI 477 A+ L +L G + L K+ + +P + + + R A Sbjct: 419 PSQDKAEGLKTMLAPFGYTFQEADSFAL---QKILEDTKGKPEAPIISTMVLRSLMKARY 475 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE----------- 526 + HFGL + Y +TSPIR+Y D++ HR+L V+ E + Sbjct: 476 DVQNLGHFGLAAKYYCHFTSPIRRYPDLMVHRVLTQVLADEANPANVGKTMPWEKRMASV 535 Query: 527 ---ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 Q ++R + AER++ A ++ G + +++ G+ V L + Sbjct: 536 AARAADQSSQREVAAQNAEREIEKLYMAEYMLAHVGE--TMVGTVSGVTKFGLFVMLP-S 592 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 G I A L RD + T+ V+ + V A + I Sbjct: 593 GVEGLISAEALP--RDHYHHDDQRMTLRGEHTGRVFSFGMPLTVVCAAADPGSGQITFHL 650 >UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 RepID=C2KYI7_9FIRM Length = 745 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 168/679 (24%), Positives = 287/679 (42%), Gaps = 54/679 (7%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSE- 67 Q K +G A +GFGF+ + + ++ +IP + M GD + ++ + Sbjct: 62 QGKYSRAESFS-QKGTFHANRRGFGFVSLSEKEEDVYIPKGEAGNAMDGDLVKVILTKKS 120 Query: 68 --KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 + + +++E +G V+ K + L + PD+P L D I G + G Sbjct: 121 ENGSKAEGKISKVLERANKEVLGLVKEKREGLYLSPDNPKLPDCILISP--GRDKGAVPG 178 Query: 126 DWAVAEMRRH-PLKGDRSFYAEL----------------TQYITFGDDHFVPWWVTLARH 168 D V E+ + P K +++ + + + DD + + Sbjct: 179 DKVVLEILSYGPSKENKAPRGRIPRKRISPLLSCPVGEVKEILGHKDDPGMDVLSVIRSF 238 Query: 169 NLEKEAPDGVATEMLD----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALP 218 +L +E P+ V E E R+D L +TID +D+DDA+ P Sbjct: 239 SLPEEFPEDVLLEANQLPNAVSPEKAEETGRKDFRKLTTITIDGEDAKDLDDAISLDYFP 298 Query: 219 D-DKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANE 277 + ++ +L V IAD + ++ EGS LD A R + YL IPMLP+ LS+ +CSL Sbjct: 299 EKEEYRLYVHIADVSDYVKEGSALDLEALERGTSVYLTDRVIPMLPKALSNGICSLHEGV 358 Query: 278 VRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE----AI 333 R L+C M +G + E + I S ++ Y +V+ LE+ PE + Sbjct: 359 DRLCLSCIMDFDREGRPLSH-EITPSIICSNKRMSYHKVTALLEDKEWEDPEEKLSYLPF 417 Query: 334 AEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAM 393 E + + ++ + + R + D P+ + E G + I AE R +++I+EE M Sbjct: 418 HELLTKMRELARLLRKSRMARGALDFDFPESKVYFDENGNISKICAEEREESHKIIEEFM 477 Query: 394 IAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA--EEVLTLDGFCK 451 + AN A + +Y +H D L+ +L + + A + L + Sbjct: 478 LIANETVAEEYYWRDIPFLYRIHEKPDWEKWQNLSHVLSSFSYSLKAKDPDNLRPKALQE 537 Query: 452 LRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRL 510 L +L +P L S I R A+ STEP HFGL + Y+ +TSPIR+Y D+ HR+ Sbjct: 538 LLSKLKGKPEEAMLSSMILRSLKQAKYSTEPEGHFGLASKYYSHFTSPIRRYPDLQIHRI 597 Query: 511 LK---AVIKGETATRPQDEI----TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTR 563 +K A + E R + I Q + R R AERD +++K+ G Sbjct: 598 IKENIAYQENEKRRRHYERILPDVASQSSLRERRAEEAERDCMKLKKCQYMKNFLGE--V 655 Query: 564 FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDV 623 F I +++ G+ V L +N IP F+ + +E + + D Sbjct: 656 FPGRISGLTQYGIYVTL-ENSIEGMIPLRFM-TEDYYIFNEEEISLRGEASGKTFHMGDP 713 Query: 624 IDVTIAEVRMETRSIIARP 642 + +++ V +RSI P Sbjct: 714 MWISVYAVDTLSRSIDFLP 732 >UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP Length = 736 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 143/656 (21%), Positives = 252/656 (38%), Gaps = 38/656 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 + + EGV + + + + + D + + + + GDR+ + K Sbjct: 94 RYRYQVGGEMLEGVFE-SRRNYCVVVPDDESAEVIVSDRNNPEHALPGDRVRVALFPLKA 152 Query: 70 RES--AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 R + + E+++ + +VG+V + + L I R K D Sbjct: 153 RRTRTGQVVEVLQRRRSTYVGRVVVTKGFSYLHTEDRALDSRILL--PREALAGAKNNDK 210 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML---- 183 A+ + + E+ + + D+ LA ++L P+ Sbjct: 211 AIVRIAHWGAREPE-PTGEVVEVLGAAGDNNTEMHAILAEYDLPYSYPEEAEEAARQIPS 269 Query: 184 ----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 +E RED + +TID A +D DDAL + L +++ V IAD + ++ GS Sbjct: 270 EIPSEEMAKREDFREVFTLTIDPADAKDFDDALSWRKLEGGLVEVGVHIADVSYYVTPGS 329 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 +DK A RA + YL IPMLP L +DLCSLR NE R +C L+ ++ + Sbjct: 330 VIDKEAYDRATSIYLVDRTIPMLPERLCNDLCSLRPNEARLAFSCVFVLNEAAEVQ-SYR 388 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 IES + Y++ ++ AE + L + Q + R + Sbjct: 389 IGRTIIESNRRYAYEEAQQVIDTKEGDD------AEVILSLHSLAQLLRKRRFAQGAINF 442 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL-------GFGI 412 + +F+L +G +D++A P AN ++EE M+ AN A K I Sbjct: 443 SSQEVQFVLDAEGRPVDVMARPHGTANELIEEFMLLANRTVATEFGKKQRNSNGDAKTFI 502 Query: 413 YNVHMGFDPANADALAALLKTHGLHVD--AEEVLTLDGFCKLRRELDAQPTG-FLDSRIR 469 Y +H D + + A ++ G E + +P + + Sbjct: 503 YRIHDLPDGDKLNQMGAFIRRFGYQFKNATEASAISKNLNAVIEASQDKPEATLIQTMAV 562 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE--TATRPQDEI 527 R + AE STE H+GL E Y +TSPIR+Y D++ HRL+ + GE + Sbjct: 563 RTMARAEYSTENIGHYGLAFEYYTHFTSPIRRYPDLLVHRLVARYMAGEGSVPQAEYEAY 622 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +++ ++ AERD + ++ + G F I +++ G V L + Sbjct: 623 AQHCSDQEQVAAKAERDSVRYKQVEYMSTRLGK--VFDGVISNVAEWGFYVELTHSHCEG 680 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 +P L+ + V + + + D + V E R I V Sbjct: 681 LVPMRLLNDDFYDYDEKNF-ALVGRRYRRKFTLGDTVRVRAIHSDFERRQIDFELV 735 >UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6VM99_LACPJ Length = 804 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 155/659 (23%), Positives = 268/659 (40%), Gaps = 36/659 (5%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVIHS----- 66 +L +T EG +KGFGF+ D +I P + + GD + I Sbjct: 63 FKLVQETKTVEGSFHGNDKGFGFVRYDPDLPDIYINPDNTQFAITGDDVAVEIIRPARPG 122 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDR----LAIVPDHPLLKDAIPCRAARGLNHEF 122 + +V+ T+ VG D ++ L +GL+ Sbjct: 123 SDRGPEGKIVSIVKRNYTQIVGAYTPSTDEDGIIGSVEIKDKKLSKYQLLITDQGLHPT- 181 Query: 123 KEGDWAVAEMRRHPL-KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 EG+ +AE+ +P + Q I DD + + +H++ P+ V E Sbjct: 182 -EGEVIIAEVAAYPDAQHPTRMIGIAKQVIGSVDDPGMDVLQVVYQHDVPSVFPEEVTDE 240 Query: 182 M--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 +E + R D+T VTID A ++D+DDA+ A LP+ L V IAD + Sbjct: 241 ANRIPDYVTDEEKVGRVDITDQPLVTIDGAESKDLDDAVVAWRLPNGNFHLGVHIADVSH 300 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ E S+LD+ A R + YL IPMLPR LS+ +CSL + R ++C M + G Sbjct: 301 YVTENSELDREAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPDVERLAMSCEMEIDQTGE 360 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLE-NTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 I ++ + F + I S A++ YD V+ LE + + + + + + + + + R Sbjct: 361 IVNH-KIFQSVIRSHARMTYDAVNQILEAHDPKTREKYADLVDMFDTMGDLHRILYKHRR 419 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + + D + + I+ E G +DI R +A R++E M+AAN A+ I Sbjct: 420 HRGAIDFDDNEAKIIVDEAGHPIDIQLRVRGLAERMIESFMLAANETVAKNYSQLKVPFI 479 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEE-VLTLDGFCKLRRELDAQP-TGFLDSRIRR 470 Y VH D + + G+ V + + +++ +P + + R Sbjct: 480 YRVHETPDSDRMLSFFEFVTNFGVSVKGSSKDVKPKMLQDVLKKVAGKPEEAMVSVMMLR 539 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-------TATRP 523 A + + HFGL Y +TSPIR+Y DM+ HRL++ + Sbjct: 540 SMKQARYADQSLGHFGLAAPYYTHFTSPIRRYPDMMVHRLIRHYAENGTGEEARARYRDN 599 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 I ++ R ERDV A ++ D G F A + + + G+ V L +N Sbjct: 600 LPNIAETTSDHERRGIDTERDVDSMKKAEYMADHVGE--TFEAVVDSVMKFGLFVEL-EN 656 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + + E V Q V K + +++ + V + V + R + + Sbjct: 657 TVEGLVHISTMDDDYYEYVEKQ-LALVGRKTKRTFRIGQPVKVQLMRVDKDQREVDFKL 714 >UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZ06_9BACT Length = 759 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 145/661 (21%), Positives = 253/661 (38%), Gaps = 35/661 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVIHS 66 L + L + PR G ++A + G+GF+ + +K F+P + + GD ++ + Sbjct: 84 LPDSRLALPDRLPRLTGRLEANKDGYGFVIDPEGKKDVFVPAHALAGAIDGDTVVCHVSG 143 Query: 67 E--KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 E + R +V F G + + + P ++ A +E Sbjct: 144 EDARGRREGVIVGVVAHGRKTFPGLLHRTPEGWYVKPKEAKIRHLFRVEAP---PPGTEE 200 Query: 125 GDWAVAEMRRHPLKGDRS-----------FYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 G + E+ +P + + D + + +A Sbjct: 201 GTVVILEVTVYPAPLSDPAAHSSEELPNIPAGRILTVLGADGDPAIDTDLVIASFGFSTA 260 Query: 174 APDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 P+ V R D +L+ VTID + +D DDA+ + D + L Sbjct: 261 FPEEVEALAHRRAQEVPIVPDKERRDFRSLEIVTIDGDTAKDFDDAISIEEEDDGTVTLG 320 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 + IAD +A++ GS LD+ RA + Y P +PM P LS+ + SL R + Sbjct: 321 IHIADVSAYVLPGSALDREGFARATSVYFPDRVLPMFPEVLSNGVLSLNPETDRLARSVT 380 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 + +G + + + I S+ ++ Y +V L + P+ ++ + ++ Sbjct: 381 ARIDREGQVL-SWTLDRSVIRSRMRMTYSEVHRALTG--EPSPDYLPYENRLHTMWRVAS 437 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + R + D P+ +L +GE +DI+ PR ++++++EE M+ AN A LR Sbjct: 438 LLRKRRMGKGSLDFDLPEPEIVLDLRGEPVDILRSPRYLSHQLIEEFMLLANTLVATRLR 497 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFL 464 ++LG ++ H P + L + L + GL EV+T ++ E P + Sbjct: 498 ERLGTALFRAHETPTPEKIENLYSFLASLGLPFTKPEVVTPRDLSRILEETKGSPLEHPV 557 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---AT 521 + R A P HFGL Y +TSPIR+Y D+I HRLL Sbjct: 558 HYSVLRSLKQARYDPSPLGHFGLAFPDYTHFTSPIRRYPDLIVHRLLDLATSSGMESLLP 617 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 + +ER R AER D+ RF+ G F I ++ G+ V L Sbjct: 618 GSLSAVAQHCSERERKATEAERMAIDFKKVRFISKHLGES--FDGRITGVASFGLFVELS 675 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 IP L E + + + V D + VT+A+V + Sbjct: 676 PFFVEGMIPIHMLGRDYYEYR-EDRHQIRGSRTGRTFSVGDAVRVTVAKVDFQRLRCDFV 734 Query: 642 P 642 Sbjct: 735 L 735 >UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID=RNR1_LACLA Length = 817 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 153/680 (22%), Positives = 266/680 (39%), Gaps = 50/680 (7%) Query: 2 FQDNPLL---AQLKQQLHSQTP---RAEGVVKATEKGFGFLEVDAQK-SYFIPPPQMKKV 54 + LL A+ K +L + G+ +A GFGF+ +DA++ F+ Q Sbjct: 46 LEAEHLLNFTAKGKVELAEKEEAKVVISGIFRANAAGFGFVSIDAEEPDVFVARGQTAFA 105 Query: 55 MHGDRIIAVIHS-----EKERESAEPEELVEPFLTRFVGKVQGKND--------RLAIVP 101 + GD + I + E++ + + VG ND + Sbjct: 106 LDGDEVFIEIDKNANALKGTSAEGHVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKS 165 Query: 102 DHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKG-DRSFYAELTQYITFGDDHFVP 160 + + + + E+ +P K ++ +T+ I DD + Sbjct: 166 RNKKIPYRVYLE---NEGLIPENKAIVRVEITHYPDKEFPQTMQGLVTEIIGQADDQGID 222 Query: 161 WWVTLARHNLEKEAPDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDAL 212 LA ++ E P V + E + R D TID A +D+DDA+ Sbjct: 223 VLEVLASMDIVSEFPKEVLDQAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAV 282 Query: 213 FAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCS 272 AK L + +L V IAD + ++ E S LDK A R + Y+ +PMLP LS+ +CS Sbjct: 283 HAKRLENGNYELGVHIADVSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICS 342 Query: 273 LRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA 332 L R +C M +S +G + N + + I++ ++ YD V+ + Sbjct: 343 LNPRINRLTQSCVMEISPEGRVI-NYQISQSIIKTTERMTYDAVNQMIAGDEAALENYAK 401 Query: 333 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA 392 IA+ V+++ ++ R + D + + I+ EKG ++I R IA R++E Sbjct: 402 IADSVKIMVELHHILEAMRKRRGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAERMIESF 461 Query: 393 MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL-TLDGFCK 451 M+ AN A IY +H T G+ ++ Sbjct: 462 MLEANETVATHFEAHGLPFIYRIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQA 521 Query: 452 LRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRL 510 +++ QP L + + R A S HFGL E Y +TSPIR+Y D++ HRL Sbjct: 522 FMKKIKGQPGEMVLSTMLLRSMQQARYSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRL 581 Query: 511 LKAVIKGETATRPQD-------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTR 563 ++ + +G+T EI + R R AER+V A F+++ G + Sbjct: 582 IREIGEGKTPANILQKWEDKIPEIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVGEE-- 639 Query: 564 FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVT 621 + I ++R GM + L +N + L + + QE + + +K+ Sbjct: 640 YEGIIASVTRFGMFIEL-ENTIEGLVHISTL---KGDYFNYQERMLALIGERSGLTFKIG 695 Query: 622 DVIDVTIAEVRMETRSIIAR 641 I + + + T I Sbjct: 696 QPIKIKVVKADRMTGEIDFE 715 >UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_SULSY Length = 701 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 170/649 (26%), Positives = 281/649 (43%), Gaps = 27/649 (4%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 LK+++ + +G V+A E GFGFL D + FIPP +MK + GD ++A + Sbjct: 61 LKREIQEKENLIKGKVEAHESGFGFLIREDGEPDLFIPPIEMKYLFDGDIVLAEEKIYRG 120 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 ++ A+ +++E + VGK++ + +R + ++ I + +++ ++ V Sbjct: 121 KKEAKIVKVLERRVKTAVGKLKQEGNRYFVYLLDFVIPHKIYV--DKKEAKKYELDNYVV 178 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEG--- 186 E+ R+P + + + + + +++L E Sbjct: 179 VEILRYPEPKVE-AKGRIIKDLGKVKNTQTVAEIVARKYDLPLTHSPEALKEAEKLPSVV 237 Query: 187 ---LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 R+DLT TID S D DDA+ + DK +L V IAD + ++ EGS +DK Sbjct: 238 KITKNRKDLTKQICFTIDPESARDHDDAVAIEK-EGDKYRLYVHIADVSHYVKEGSVIDK 296 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A R T YLP + MLP L+ LCSL+ E R C M + G + + + + + Sbjct: 297 EAFQRGNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVE-YDIYES 355 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363 IESKAKL YDQ + + + + + ++ + ++ + + + + D P+ Sbjct: 356 VIESKAKLTYDQALGIILGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPE 415 Query: 364 YRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN 423 + + + G D+V R +ANRI+EE MI AN A+ + IY VH Sbjct: 416 SQILFDQYGNPYDVVPYERHLANRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKLEK 475 Query: 424 ADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEP 481 A L+ G V+ + + K+ P + R A S E Sbjct: 476 VMAFVDLIAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSPEN 535 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-------ITVQMAER 534 HFGL E Y +TSPIR+Y D+ HRLLK IK + + +E I Q +ER Sbjct: 536 IGHFGLASECYTHFTSPIRRYADVWVHRLLKKAIKKKFTKKDMEELPKKLDIIAKQCSER 595 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R+ AERD D L R LKDK G +F I + G+ + + +P L Sbjct: 596 ERVADDAERDALDILKLRILKDKVGE--KFEGIITGVMAVGLFIEIERYIIEGLVPIDSL 653 Query: 595 HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 E I + +++ D + V I +V +T+ I + V Sbjct: 654 PGK----FKYDEKNHQLIGDKMKFRLGDKVLVEIVKVDEDTKRIDLKLV 698 >UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VX0_SOLUE Length = 762 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 162/688 (23%), Positives = 269/688 (39%), Gaps = 69/688 (10%) Query: 18 QTPRAEGVVKATEKGFGFLEVDAQ-----KSYFIPPPQMKKVMHGDRIIAVI--HSEKER 70 G + G+GFL D Q FIPP + MHGDR++ I R Sbjct: 64 SREFVVGRLNLHRDGYGFLIADRQIPRVVGDIFIPPDSASQAMHGDRVLVRIARIEPDGR 123 Query: 71 ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA------------------IPC 112 ++++ VG+ + +VP L+ I Sbjct: 124 ADGNIVKVLKRAHATVVGEFKIGRRGCYVVPHDERLQQWVDIPEGMEFPPAGASVDRIGV 183 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 A + E +G E+ + +G+ S + + + DD V + + +H+L Sbjct: 184 TAPKVATVEQLDGMIVNVEIMEYAGRGE-SPVGRVVEILGHPDDFGVDVEIVIRKHHLPH 242 Query: 173 EAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 + P V + E R D +D VTID + D DDA++ LP L Sbjct: 243 QFPPEVIEQAQAIPGVIPPAEFEGRRDFRGMDIVTIDGETARDFDDAVWVDKLPSGNYVL 302 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD + ++ G+ +D+ A +R + Y P +PMLP ELS +LCSL E R VL+ Sbjct: 303 HVHIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSLVPLEDRLVLSA 362 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQIC 344 M + G + EF I S A++ Y V LE + + + + L+ ++ Sbjct: 363 LMEIDHRGEVVRQ-EFTEGVIRSVARMTYTNVHKLLEGDQVLRERYKPLVPRFELMQELA 421 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 R + D P+ + G ++ + PR IANR++EE M+AAN A L Sbjct: 422 LVLNRKRVRRGSIDFDLPEPLIEFDDLGAMIGVTRAPRNIANRLIEEFMLAANESVAGHL 481 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA------------------------ 440 + IY +H DP + G+ + Sbjct: 482 ENAGIASIYRIHEKPDPKRVMEFEEVAAHFGVSLGVGAIEVKRFKVTDKRRDGTKKQQAI 541 Query: 441 ----EEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATW 495 + + KL +++ +P L + R A STE HF L + Y + Sbjct: 542 VLADNTNINSRHYQKLVAKIEGKPEERILSFLMLRSLRQARYSTENTGHFALAADTYTHF 601 Query: 496 TSPIRKYGDMINHRLLKAVIKGETATRPQDE--ITVQMAERRRLNRMAERDVGDWLYARF 553 TSPIR+Y D+I HRLL+AV+ G+ + I ++ R AER++ +W +F Sbjct: 602 TSPIRRYPDLIVHRLLRAVLLGKPTPDESELGPIADDCSQSERRAADAERELVEWKKVKF 661 Query: 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIK 613 + D+ G D F A ++ ++ G+ V L + +P L + + V + Sbjct: 662 MADRVGED--FDALVISTTKYGLFVELTNLFIEGLVPIDTLPDDQYTYQENVRK-VVGKR 718 Query: 614 GETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + D + V + + R + Sbjct: 719 TRRQFSIGDKLRVVLDRIDANDRKLQFS 746 >UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9_ACIAD Length = 817 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 157/656 (23%), Positives = 273/656 (41%), Gaps = 21/656 (3%) Query: 1 MFQDNPLLA-QLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDR 59 M +D L K Q + P + V KGFG +D Q +P +++ V +GDR Sbjct: 77 MVRDGQLSKDGFKFQPIGEQPTFDATVYINNKGFGSAHIDGQNDLLLPERELRLVFNGDR 136 Query: 60 IIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 + S K + E+ + + + +GK+ + P P IP Sbjct: 137 VKVRQTSVDRKGKAWGFITEVTQHRVKQLIGKLAVHEGEYFLQPSAPNAHQPIPLEKELI 196 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 + + K G+ + +P + + S + Q ++ D + T+ L E P+ Sbjct: 197 EHAQAKVGENLRVAIDDYPTREEFS-TGHIIQSMSDKADTEIIIPQTILEFGLPYEFPEE 255 Query: 178 VATEML-------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 V + + R DL L VTID D DDA++A+ +++VAIAD Sbjct: 256 VVKDAESFKEPSKKDIEGRIDLRDLPLVTIDGEDARDFDDAVYAEKRSGGGYRVVVAIAD 315 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 + ++ G LD A+ R + Y P F +PMLP LS+ LCSL + R + C + LS Sbjct: 316 VSHYVRLGKPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLKLSR 375 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 G + + EF+ + + SKA+L Y QV ++ + D P+ + I + + L Q+ Q Sbjct: 376 AGRVM-SYEFYPSVMHSKARLTYTQVGNYFDGQTDAIPDDKNIQKSLNTLFQLYQTLKGL 434 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R + + + E G + +I+ R A++++EE M+ AN+ AA Sbjct: 435 RAKRHAMEFETIETYMTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEFSLQHDIP 494 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIR 469 +Y VH + + + +K G + + T + ++ + + + + Sbjct: 495 MLYRVHEAPEFSRIQKVKDFVKLLG--LPFPDQPTQADYQRVIEATKDRIDAPSIHAVLL 552 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---ATRPQDE 526 R A + H+GL EAY +TSPIR+Y D++ HR +KA ++ + + D+ Sbjct: 553 RSMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLQQKPYPLSGAALDD 612 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 Q + R A R V WL ++K G + F I ++ G+ V L D Sbjct: 613 AGEQFSRTERRADEASRSVTTWLKCHYMKQHLGEE--FIGIISAVTEFGLFVTLKDLYVD 670 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 I L L V ++ + D + + +A V ++ R I Sbjct: 671 GMIHVSQLGDD-FFLYDQASQSLVGQNRGQIFGLGDEVKIKVAAVNLDERKIDFEL 725 >UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7Z3_9PLAN Length = 955 Score = 593 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 157/655 (23%), Positives = 275/655 (41%), Gaps = 30/655 (4%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGFGFLEV-------DAQKSYFIPPPQMKKVMHGDRIIA 62 + K + G K GFGF+ D + FIP + +GD + Sbjct: 188 KEKPSRRGKDKTVTGKFKRAAAGFGFVRPLDVTSRGDRTQDIFIPQNASQDAANGDIVRV 247 Query: 63 VIHSEKE--RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 + S R+S E E++E +FVG Q + + D + A+P Sbjct: 248 RLVSGGRSLRKSGEIVEILERDTHQFVGVYQEQRGSGVVEVDGRVF--AVPISVGDPGAK 305 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 GD V EM R P A +T+ + + + + L + P+ V Sbjct: 306 GAAPGDKVVIEMVRFPSHTHEG-EAVITEVLGARGTPGIDTLSIMREYELPEAFPEAVLA 364 Query: 181 EMLDEGLV-------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 +E R D T +TID D DDA+ L QL V IAD + Sbjct: 365 ASREEAEKFDESIGDRRDFTKTTIITIDPVDARDFDDAISLTKLESGNYQLGVHIADVSH 424 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ S LD+ A+ RA + YLP +PMLP +S++L SL+ ++VR + S +GT Sbjct: 425 FVKPKSVLDREARDRATSVYLPDRVLPMLPEIISNNLASLQPDKVRYAQTAIIEFSPEGT 484 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA-IAEQVRLLAQICQRRGEWRH 352 + EF+ + I+S + Y++V D+L + W+ + + + E + ++ ++ R Sbjct: 485 PLHS-EFYLSAIKSCRRFTYEEVDDYLADRQAWKKKLKPQVHELLGVMHELAMILRRRRL 543 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + P+ + L +KGEV +++I+EE M+AAN AR L +K + Sbjct: 544 ERGAIELSLPETKIDLDKKGEVSGAHLSKNTESHQIIEEFMLAANEAVARHLNEKELPFL 603 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRF 471 +H D L ++ G+ D + + ++ +E+ P ++ + R Sbjct: 604 RRIHENPDLRKLQVLTKFVRELGIECD--SLESRFEIKRVIKEVAGAPEEHAVNYAVLRA 661 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE---IT 528 A S H+ L E Y +TSPIR+Y D+ HR+L+++I G+ + Sbjct: 662 MQKAIYSPAVEGHYALHSEHYCHFTSPIRRYPDLTIHRMLRSLIHGKKPAADFASQVLLA 721 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 +ER + + AERD+ +L + G++ A I + G+ V +D A Sbjct: 722 EHCSEREQRAQAAERDLIKVKLLGYLSKRVGSE--MDAVITGVEEFGIFVMGIDLPAEGL 779 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 I L + S + + +++ DV+ V++A+V ++ R + R V Sbjct: 780 IHIQSLEDDYYKFD-SDTHSLTGRRAGNRFRLGDVLRVSVAKVDVDRRELDFRFV 833 >UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J9E8_BLASP Length = 649 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 142/650 (21%), Positives = 269/650 (41%), Gaps = 36/650 (5%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEK-- 68 K S A G + T G+ F+ + K FIP + + + GD + + K Sbjct: 9 KFAGLSNNSLAIGFINITSYGYAFVNIKGFPKDIFIPKKKTNRAIEGDLVQVRFKNRKSG 68 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 ++ E ++++ F+G ++ K+ ++ + + I ++ + Sbjct: 69 KKIEGEVIKILKRKRKNFIGILKMKSQYGLVIVHNNTIHVDILIPI--NEFKGYQHNEKV 126 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD---- 184 + E+ + P K ++ ++ + ++ + L+ + + E P V E + Sbjct: 127 LVEIVKWP-KNSKNPLGKIIKGFGVSGEYKTEIFSLLSEYGISYEFPKEVEKEAKEIVLK 185 Query: 185 ---EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + +R D+ ++ TID +D+DDAL + L + ++ + IAD + ++ EGS L Sbjct: 186 KNSDLNMRRDMRNINTFTIDPLDAKDIDDALSIRKLNSNTWEIGIHIADVSHYVKEGSFL 245 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK A RA + Y G IPMLP+ LS+DLCSL + + + ++ G I + F Sbjct: 246 DKEAYTRANSIYFVGKVIPMLPKILSNDLCSLHPEKDKLSFSSIFNMNNQGKILKSW-FG 304 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR 361 I S + Y++V +E E + L + + R + + ++ Sbjct: 305 KTIIRSNRRFTYEEVQKIIERKKG------DYHEDISTLLFFSKILTKNRLKNGAISIEK 358 Query: 362 PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK------LGFGIYNV 415 + +F L +K + E A+R++EE M+ AN + IY V Sbjct: 359 VEIKFHLDKKNNPTRLYLEKSNEAHRLIEEFMLLANRKISEFFSLNLDGKPSNRTYIYRV 418 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSF 474 H D L +++ G +D + + T L + + + +++ I R S Sbjct: 419 HDEPDFQKIFVLKKIIEPLGYFLDLKNIKT--SINHLLKSIQGKSEQNMIENLILRTMSK 476 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE----TATRPQDEITVQ 530 A+ ST+ H+GL Y +TSPIR+Y D+I HRLL + + + +E + Sbjct: 477 AKYSTKNIGHYGLSFIYYTHFTSPIRRYSDIIAHRLLNYYLTKKNNKLKSIEFYEEQSKH 536 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 +E+ RL AER+ +L +++K G + F I + + + L+ I Sbjct: 537 CSEKERLAIDAEREFLKYLQVKYIKKYLGKE--FEGIITGFTEWSVYIDLLVFQTEGMIR 594 Query: 591 APFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 + L S + K VY + D I V + + +E + I Sbjct: 595 LRDIQEDFYTL-HSNNYSIIGRKKRRVYYLGDRIKVKLIDANIEKKQITL 643 >UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 RepID=D2MM97_9FIRM Length = 759 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 158/662 (23%), Positives = 269/662 (40%), Gaps = 32/662 (4%) Query: 1 MFQDNPLLAQLKQQL--HSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M Q+ + + + SQ EG + G GF++++ + SY I P + M+GD Sbjct: 47 MEQEYFIFRNARNEFLTQSQAKVIEGRLSVNRMGVGFVDIEDKDSYRIEAPDLATAMNGD 106 Query: 59 RIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGL 118 ++ K A+ + E VG + K ++ + D LK+ R + Sbjct: 107 LVLIQAL--KILPFAKVIAIKERAKDTVVGTIFTKGKKVYLGLDDERLKER-KVRLSYSK 163 Query: 119 NHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV 178 + +G V + R+ + + I DD L H + E P+ V Sbjct: 164 DFLPIDGLKVVGHITRYGD----PLDVTVLKVIGHKDDPGTDIASILVDHEIPLEFPEEV 219 Query: 179 ATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 E+ + + R+DL FVTID S++D DDA+ + + L V+IAD Sbjct: 220 LEELKSISQEVHPSQFIGRKDLRNQIFVTIDGDSSKDFDDAVSVEKDENG-YHLWVSIAD 278 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 ++++ E + LD+ A+ R+F+ Y+ +PMLP ELS+ +CSL R L C M +S Sbjct: 279 VSSYVQENTALDQEAQQRSFSTYVVDRVVPMLPHELSNGICSLNPQVDRLTLTCEMQISK 338 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 G I + + + + I SK ++ Y++V+ L E + +L Sbjct: 339 QGEIV-SYDVYPSVICSKRRMTYNKVNQILIGNESVIQEYADMGNFFEVLLDCADAIRHQ 397 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R + + + P+ L E+G+ + I + R +A I+E+ MI AN+ A+ L++ Sbjct: 398 RVDKGAINFEHPETGIDLDERGKPIHIYPKQRGVAEEIIEDCMIVANVSVAKYLKEYGIP 457 Query: 411 GIYNVHMGFDPANADALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRI 468 GIY VH L + G + V D L D L+ + Sbjct: 458 GIYRVHEEPSAKRLKEYRHLAEILGKPFTLKTSNVQPKDVQQFLTSIQDENSAPILNMMM 517 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD--- 525 R A HFGL + Y +TSPIR+Y D+I HR+L + GE + +D Sbjct: 518 LRTMQKARYDIRDIGHFGLAEQDYLHFTSPIRRYPDLIVHRMLWKYMFGENQKKDKDWDN 577 Query: 526 ----EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 E + + R AE D A +++D G F I ++ G V+L Sbjct: 578 RRNREFAEHASIQERNCSDAEYACLDMKKAEYMQDHLGE--YFDGIITGVTHFGFFVQL- 634 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 +N + + L + V + VY+V + V + + ++ Sbjct: 635 ENTVEGLVQTRSIPGD-YYLFHEDRSELVGKRNGVVYRVGQSVKVKVVAANKQKGNVDFE 693 Query: 642 PV 643 V Sbjct: 694 LV 695 >UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9BACT Length = 765 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 147/663 (22%), Positives = 258/663 (38%), Gaps = 39/663 (5%) Query: 13 QQLHSQTPRAEGVVKATEKG-FGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKER- 70 L+++ EG G FL D F+ ++GD++ + ++ Sbjct: 73 YTLNTKGQVQEGTFIRKANGKNTFLPEDGGTPVFVSERNSMAALNGDQVRVQFMARRQNH 132 Query: 71 -ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 + A +++ FVG+++ + D +V L I + K D A+ Sbjct: 133 IKEAMVIAILQRKKDTFVGRLRVEKDIAFLVTQENLFIHDILI--PKKKLKGGKTDDRAL 190 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML------ 183 ++ + P ++ E+ + D+ V LA++ L + P V Sbjct: 191 VKITKWPDADHKNLVGEVVDVLGEAGDNDVEMNTILAQYGLPYKYPKRVEDAAKKISAEI 250 Query: 184 --DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + RED + TID +D DDAL + L + ++ V IAD + ++ EG + Sbjct: 251 TAQDYAEREDFRDVWTCTIDPRDAKDFDDALSIRKLESGQWEVGVHIADVSHYVKEGDII 310 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 D+ A+ RA + YL IPMLP L + +CSLR +E + +C L + + + Sbjct: 311 DREAQQRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSCIFNLDDEANV-KSYRIV 369 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESEAI------------AEQVRLLAQICQRRGE 349 I+S + Y++ LE+ G E AEQ+ L ++ + Sbjct: 370 HTVIKSNRRYAYEEAQQILEDNGVVDGTGEPAPDPGKAGYKGENAEQIITLDRLAKLIRG 429 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR-----VL 404 R V D + F + EKG+ + + + AN+++EE M+ AN A Sbjct: 430 RRMKAGSVKFDSEELHFDIDEKGKPIRCYFKRSKDANKLIEEFMLLANKTVAESVGIVKK 489 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL--TLDGFCKLRRELDA-QPT 461 K Y VH DP + L G + + T KL E+ + Sbjct: 490 GKKAKTLPYRVHDNPDPQKFENLREFTAKFGYKLKSASTKGATARALNKLMDEVQGKREE 549 Query: 462 GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA- 520 + + R A+ +T HFGL + Y +TSPIR+Y D + HRL+ G + Sbjct: 550 KVIQTIALRSMMKAKYTTHNIGHFGLAFDYYTHFTSPIRRYPDTMVHRLITRYQNGGRSA 609 Query: 521 -TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 +E+ ++ + + AERD + F+ + G + A I I G+ Sbjct: 610 NKEHYEELCEHCSDMELVAQNAERDSIKYKMVEFMSEHIGEC--YDAHISGIQSFGIYAE 667 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 + +N IP L + V + VY++ D I + +A+ +E R + Sbjct: 668 IDENHCEGMIPMRDLDDDYYDFDEKNYC-LVGRRRHHVYQLGDPIRIQVAKADLERRQLD 726 Query: 640 ARP 642 Sbjct: 727 FAL 729 >UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria RepID=RNB_BUCA5 Length = 649 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 361/644 (56%), Positives = 482/644 (74%), Gaps = 1/644 (0%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL QLK+ LH+++PR EG+VK+TE+GFGFLEVD QKSYFIPP MK VMHGD+I Sbjct: 1 MFQNNPLLTQLKKNLHAKSPRVEGIVKSTERGFGFLEVDPQKSYFIPPKNMKNVMHGDKI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 IA++ +EK+RE EPE+L+EPFL RFVGK++ K++RL IVPD+P LKD I C+ + + Sbjct: 61 IALLTTEKDREIVEPEKLIEPFLNRFVGKIEKKDNRLFIVPDYPFLKDLITCQPNKNCIN 120 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP-DGVA 179 F+ GDWAVA++++H LKGD FYAELT+ IT DD +PWWVTLARH+L+++ P Sbjct: 121 IFQNGDWAVAQLKKHKLKGDHLFYAELTEKITQEDDPLIPWWVTLARHDLDRKEPLAEED 180 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 +L E R+DLT LDF+TID+ +T+D+DDALF + + LIVAIADPTA+I GS Sbjct: 181 DLILKESDNRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGS 240 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 KLD A R FTNYLPGFNIPMLPR LS+D+CSL N+ RPVLAC +T+ +G I + IE Sbjct: 241 KLDVIASKRIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIE 300 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 FF A I+SK+KL YD VSDW+E G W P +++IA Q+ +L ++C R +WR +A++FK Sbjct: 301 FFLAWIKSKSKLSYDHVSDWIEKIGSWIPPTKSIANQILILHRLCLLRIKWRKKNAVLFK 360 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 D +YRF + E G+++D++ E RRIA++I+EE+MI ANI AA L +GFGIYNVH GF Sbjct: 361 DSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKNIGFGIYNVHSGF 420 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEIST 479 D NA+ + L+++ L+ +E+ TL GFC LRR L+ ++DSRIRRFQSF + ST Sbjct: 421 DLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYIDSRIRRFQSFGDFST 480 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNR 539 PGPHF LG YATWTSPIRKY DMINHRLLK++IK E + +P ++I ++++E+RR NR Sbjct: 481 IPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSIIKKEKSIKPGEDIKIKISEQRRRNR 540 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 MAERDV DWLY FL+ K + +F AEI DISR G+R RL++NGA FIP +H +R+ Sbjct: 541 MAERDVSDWLYTIFLQKKKYQNQKFNAEITDISRSGIRARLIENGANVFIPGTLIHPIRE 600 Query: 600 ELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 EL +QE+G V I G YK++D+I VT++++R++TRSIIA+PV Sbjct: 601 ELNFNQESGKVFINGIMHYKISDLIQVTLSDIRLKTRSIIAKPV 644 >UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6K5_9BACT Length = 730 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 154/664 (23%), Positives = 266/664 (40%), Gaps = 39/664 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVD---AQKSYFIPPPQMKKVMHGDRIIAVI 64 + + + + G + +GFGF+ K F+ M MHGD ++ + Sbjct: 54 IKRKQYANPKKVNLLVGTMDCNSRGFGFVVPAKKGEGKDIFVNEENMNSAMHGDIVVVRL 113 Query: 65 HSEKERESA---------EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 ++ + +++ VG + L +VPD+ L + Sbjct: 114 PDLEQIPKRGKKKGGGSGQIVNVLKRANPFIVGTFKKSKRLLYVVPDNARLFRDVYVT-- 171 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 G + GD V ++ + P + + E+T+ + D V + + L + Sbjct: 172 EGDAKDATPGDKVVVKIVQWPSRH-LNPEGEITEILGKEGDPKVDLHSIIYQFKLPQAFH 230 Query: 176 DGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V+ E +E R DL +TID +D DDAL + QL V Sbjct: 231 KKVSNEAEKISQEIPQEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEKDERGNWQLGVH 290 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ + S +DK A++R + YLPG IPMLP LS++LCSLR E R + +T Sbjct: 291 IADVSYYVKQDSAIDKEARLRGTSVYLPGKVIPMLPEALSNNLCSLREGEDRLTKSVLVT 350 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 + +G I + + I +L Y Q + + N E + + + LAQ+ Q Sbjct: 351 IDPEGNILKST-VKHSVINVTKRLTYKQATAIINNESAGNI-PEMVKDVLVELAQLAQIL 408 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + + N + D P+ L E+G + + E R +++R+VEE M+ AN A + Sbjct: 409 FKNKMNRGAIELDLPEVSLKLDEEGNIEKVEKEERDVSHRLVEECMLLANEMVATFMHKN 468 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDS 466 I VH D + A ++ GL + + E+ +P ++ Sbjct: 469 KLPLISRVHPEPDEEDMLEFADFVR--GLENTRVDPFKIHQLQAFLAEIRGKPEAHMVNL 526 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA------ 520 + + A S HF L LE YA +TSPIR+Y D+I HR L GE Sbjct: 527 VLLKSMKQAVYSATESGHFALALENYAHFTSPIRRYPDLIIHRTLDQHFSGELRSPVIQK 586 Query: 521 --TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 E + R AER++ RF +++ G + F I + G V Sbjct: 587 MWENCLPEWAGHCSVTERRAEEAEREITKLKLLRFFENRVGDN--FEGVITGVQEYGFFV 644 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 +L + + L ++ + V + + +++V DV+ V I ++ + R + Sbjct: 645 QLSEYLLEGLVHIRTLEDDIYQIS-KKHMALVGTRRKKMFRVGDVVKVKIYKIDLLKREV 703 Query: 639 IARP 642 P Sbjct: 704 DFIP 707 >UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 Length = 744 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 167/643 (25%), Positives = 264/643 (41%), Gaps = 40/643 (6%) Query: 19 TPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS--EKERESAEPE 76 R +G + G+GF+ + F+PP GD + A + R E Sbjct: 55 ANRVQGPLSLHRDGYGFVRLPEG-DLFVPPGYTGDAWPGDLVEARVMPPGRDGRPWGVVE 113 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 +++ R VG + + R ++PD P L + A K G V ++ Sbjct: 114 RVLKRARERLVGTLDFRKGRALLLPDEPNLPE---LPLAPEGLEGLKRGSRIVVQV---- 166 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLV 188 + Y Y+ G+ +A++ L E P+ V E E Sbjct: 167 -HYGKRPYGTFLAYLGEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRR 225 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 RED L TID +D DDA+ + LP ++ V IAD + ++ EGS LD+ A +R Sbjct: 226 REDFRGLRVFTIDGVDAKDFDDAIHVERLP-GGYRIGVHIADVSHYVKEGSLLDQEAFLR 284 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 + YLPG +PMLP LS+ +CSLR E R VL+ + L+ D + + F I S Sbjct: 285 GTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKV-KRVRFREGVIRSV 343 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 A+L Y +V + E G E +AE +RLL + QR E R + P+ + + Sbjct: 344 ARLTYTEVEAFAEGFG-LPEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFAFPEVKVEV 402 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 GE+GE L ++ + A ++EE M+ AN A L K G++ VH + L Sbjct: 403 GEEGE-LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLR 461 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGL 487 L G + + K +P + + R A + E HFGL Sbjct: 462 QALARLGYTLPPKLSGH--ALQKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHFGL 519 Query: 488 GLEAYATWTSPIRKYGDMINHRLLKAVI-------KGETATRPQDEITVQMAERRRLNRM 540 +E Y +TSPIR+Y D++ HR+LKA + + I +E R Sbjct: 520 AMEHYLHFTSPIRRYPDLVVHRVLKAALRRTLTPARKARWQEAFPAIAEHASEMERKAEA 579 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AER++ + A++ + G RF ++ ++ G V L NG + L Sbjct: 580 AERELTKYYMAKWAELHVGE--RFLGKVTGVANFGAFVTLP-NGVEGLVRLEALGP---- 632 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 S+E + ++ D ++V IA R + PV Sbjct: 633 YTYSEEAMALLGPKGRRIRLGDEMEVRIAGANPRLRQVDLLPV 675 >UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=2 Tax=Deltaproteobacteria RepID=Q1NL99_9DELT Length = 782 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 154/665 (23%), Positives = 266/665 (40%), Gaps = 41/665 (6%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-------KSYFIPPPQMKKVMHGDRII 61 + + L + +GFGF + K F+PP M +HGD+I+ Sbjct: 125 RRSRYSLAPDLEICPAELSMHPRGFGFAMLSESTDAARYHKDIFLPPDAMGSAVHGDKIL 184 Query: 62 A-VIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 V+ ++ ++E +T VG + P+ L + R + Sbjct: 185 VLVVKGRADKAEGRVLRVLERGITSLVGIYVSGATSGLVTPEDERLPFKVVVRRPQS--G 242 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 + G+ V E+ R K + + + + V + + H L + Sbjct: 243 GARNGEAVVVEISRF--KEQGNPEGRIVEVLGDPAAAPVQIEIAIRSHQLPHRFAPALLA 300 Query: 181 EML------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 E+ + R DL + VTIDS S D DDA+ + L L+L V+IAD + + Sbjct: 301 EVEAYSDKIEPQASRLDLREIPHVTIDSESARDYDDAVAVEPLAKGGLRLYVSIADVSHY 360 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + GS LD A R + Y PG +PMLP LS+DLCSL ++ R ++ + G Sbjct: 361 VQPGSALDDEAYARGTSVYFPGRVVPMLPERLSNDLCSLVPDQDRYTMSAIIDFDGKGQ- 419 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRRGEWRHN 353 + F + I S+ +L Y +V LE+ + I + +A++ + R Sbjct: 420 RKSARFGKSLIRSRHRLTYTKVKAMLEDREPELCRRYADILPDLEQIAKLAANLNQVRMR 479 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 + + P+ +L + G + I R +A++++EE M+AAN A L + +Y Sbjct: 480 RGSIGFEIPEADIVLDDDGHIDHIRRGERNMAHKLIEECMLAANEAVAEFLERQQAPTLY 539 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQ 472 +H DP A GL + E F ++ P ++ S + R Sbjct: 540 RIHEDPDPVKVTEFAEFAGAMGLQLPKGEPG-PGWFGQVLALAAGTPREYIVSSLLLRSL 598 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV----------------IK 516 A + E HFGL Y +TSPIR+Y D++ HR+L + + Sbjct: 599 QQARYAPENVGHFGLAATHYTHFTSPIRRYPDLMVHRILARLTAAEGGGKKRQKQPVGAQ 658 Query: 517 GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 G ++++ R R+ AER+ + L A ++ DK G + F A + IS GM Sbjct: 659 GLAPAADLATAGLELSRRERVAVDAERNATERLVALYMADKVGEE--FDAVVSGISSFGM 716 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 V LV+ + L E+ + + V ++++ + I V ++ V R Sbjct: 717 FVELVEIMISGAVALTDLTDDYYEVD-DKSHRLVGRNSNRIFQIGNPIRVRLSSVDQRRR 775 Query: 637 SIIAR 641 + Sbjct: 776 RLNFV 780 >UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJI5_ACIBL Length = 827 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 156/751 (20%), Positives = 260/751 (34%), Gaps = 132/751 (17%) Query: 19 TPRAEGVVKATEKGFGFLEVDA-------QKSYFIPPPQMKKVMHGDRIIAVI--HSEKE 69 G + G+GF+ A + +IPP + MHGD ++A I + Sbjct: 68 QNLIAGKLSMHRDGYGFVMPGAAEVKSAIEGDIYIPPHAIGSAMHGDEVLAEIVATKKDG 127 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK------ 123 R + T VG + + P + I + + Sbjct: 128 RAEGRILRTLNRAHTSVVGTFHY-DKVNFVRPIDEKITQDIVIPKGMEWPPDVEREEGEK 186 Query: 124 -----EGDWAV------------------AEMRRHPLKGDRSFYAELTQYITFGDDHFVP 160 E D + E+ P S + + + + DD V Sbjct: 187 RKKRSEQDRVIGTEAKRREWTDLDNLVVNVEITEWPSPTQ-SPRGRVVEILGYEDDFGVD 245 Query: 161 WWVTLARHNLEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDAL 212 + + +H+L + P V +E E R D L VTID + D DDA+ Sbjct: 246 TEIMIRKHHLPHQFPAAVLSEARSFSPEIPAKEIKHRRDYRELPIVTIDGETARDFDDAV 305 Query: 213 FAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCS 272 LP+ +L V IAD ++ + S +D A++R + Y P +PMLP ELS D+CS Sbjct: 306 LVSHLPNGNFELQVHIADVAHYVTDESDIDLEARLRGTSVYFPDRAVPMLPLELSTDICS 365 Query: 273 LRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA 332 LR R VL+C M + G I E I S ++ Y V L+ + + Sbjct: 366 LRPQVERLVLSCVMEIDHQGEIV-GYELNEGVIRSAERMTYTAVHGVLQGDTELRTRYAP 424 Query: 333 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA 392 + + L+ + + R + D P+ E G + + R A+R++EE Sbjct: 425 LVKNFELMRDLASILNKKRQKRGSIDFDLPEPVIEFDENGLMKGVTRSERNEAHRLIEEF 484 Query: 393 MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL-------- 444 M+AAN A L + +Y +H DP L + G + + Sbjct: 485 MLAANESVATYLEARKIASLYRIHEKPDPKRVYEFETLAASFGYSLGVGSLPIERVHLKA 544 Query: 445 -----------------------TLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTE 480 T + KL ++L+ +P L + R A S + Sbjct: 545 DKRARHGTGRRSEPIEIPKDVHITPRMYQKLTQKLEGKPEERILSYLMLRSLRQARYSEK 604 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET--------------------- 519 HF L +Y +TSPIR+Y D+I HR+LK V+K + Sbjct: 605 NEGHFALAATSYTHFTSPIRRYPDLIVHRILKQVLKEQAEKNDHGVPVGVGGAVNEVDGH 664 Query: 520 ---------------------------ATRPQDEITVQMAERRRLNRMAERDVGDWLYAR 552 +I + ++ R AER++ +W + Sbjct: 665 SPWSKRDGHERKGKQQHEDRPPLTGPIPEEQLRQIAEESSDAERRADDAERELLEWKKIK 724 Query: 553 FLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI 612 F++D+ G + F IV +++ G+ V L D +P L + Sbjct: 725 FMQDRVGEE--FTGLIVSVTKYGLFVELTDLFVEGLVPLLTLQGDHFNY-HENTKQLIGE 781 Query: 613 KGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + Y + D + V + + R + V Sbjct: 782 RSRKTYSLGDKVRVILDRIDRMQRKLQFAVV 812 >UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RFP5_9FIRM Length = 716 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 146/653 (22%), Positives = 259/653 (39%), Gaps = 32/653 (4%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVI-HSE 67 + + Q G ++ KGFGF+E D S+++ P +++ + D + A + Sbjct: 64 KRERYFFSKQLGYVVGKLRVNPKGFGFVEYDEG-SFYVAPDKLRFALDQDEVYARSWTNN 122 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 E E+++ + VG V+ + R +PD + P + + Sbjct: 123 DGSREGEIVEVIKHNINNVVGVVKMREGRKYFLPDADIYNR--PFKITNYDDFHLVHDSK 180 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--- 184 + + + + + I + D + L ++ E P V E++ Sbjct: 181 VLVHIDSYGST----LKCHIEKEIGYKYDPGIDILSILLEKDITPEFPREVMEEVMQIPE 236 Query: 185 -----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 E R+DL L +TID D+DDA+ + +L V IAD + ++ GS Sbjct: 237 ALQSKEYANRKDLRKLLTITIDGEDARDLDDAISIEKTEQG-YRLYVHIADVSHYVTAGS 295 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LDK A R + Y+ +PMLP LS+ +CSL R L C M ++ GT+ D + Sbjct: 296 ALDKEAYARGTSVYVVDRVVPMLPHALSNGICSLNPKVDRCTLTCMMEINRKGTVID-YQ 354 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 + + I S ++ Y V+ LE Q + + + + + + R + Sbjct: 355 IYPSVINSDERMTYTAVNAILEGDEQVQKQYPHLLKMCLDMKVLSGIIRKRREKLGAIDF 414 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 D + + ++ EKG+ +DIV R+ A RI+E+ MIAAN A +R ++ +H Sbjct: 415 DTNEAKILVNEKGKPVDIVLRERKEAERIIEDFMIAANETVAAHVRWLEIPSMFRIHEQP 474 Query: 420 DPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEI 477 +P A + KT G + + + +E + L + + R A Sbjct: 475 EPKRIREFARIAKTLGYTFTGGIQNVYPAQLQAMLKEAKGENNYSVLSTFMLRSMQKARY 534 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE--------TATRPQDEITV 529 HFGL L+ Y +TSPIR+Y D++ HR+L+ + ++ Sbjct: 535 DRRCIGHFGLALKNYLHFTSPIRRYPDLVVHRMLRKYFFEGLQDSEKMARDEQWIEDAAY 594 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 Q +ER R AER V D A +++ + D ++ I I+R G+ V L N + Sbjct: 595 QASERERNAIDAERAVEDMKKAEYMEGRI--DRQYDGVISGITRFGLFVEL-ANTVEGLV 651 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + + + VY++ + V R I Sbjct: 652 HISTIDDDYYH-YDDETKCLIGEHSANVYRMGQRVRVVCVAANRFKREIDFEL 703 >UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q048G6_LACDB Length = 789 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 161/681 (23%), Positives = 281/681 (41%), Gaps = 51/681 (7%) Query: 1 MFQDNPLLA--QLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMH 56 + Q+ ++ + QL + EGV +A +KGFGF+ +D ++ FI K + Sbjct: 50 LEQEKQIITDGNGRYQLAKENTEVEGVFRANDKGFGFVRLDDEEADDVFINSDATKLALD 109 Query: 57 GDRIIAVIHS-----EKERESAEPEELVEPFLTRFVG--------KVQGKNDRLAIVPDH 103 GDR+ I + + + EE++E + VG +V+ + ++P + Sbjct: 110 GDRVKVKITAGGNPWNGKGPEGQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVIPTN 169 Query: 104 PLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKG-DRSFYAELTQYITFGDDHFVPWW 162 K + GL + GD ++ +P + + + I +D V Sbjct: 170 KKFKKYRVYVSENGLIP--QMGDMVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIM 227 Query: 163 VTLARHNLEKEAPDGVATEM----------LDEGLVREDLTALDFVTIDSASTEDMDDAL 212 +A H++ E P+ + R D+T VTID ++D DDA+ Sbjct: 228 SIVAEHDIRTEWPEDALEQANAIPDHVTEEERHEAGRRDITDQPAVTIDGDDSKDFDDAV 287 Query: 213 FAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCS 272 L + L V IAD ++ EG+ LD+ A R + YL IPMLP LS+ +CS Sbjct: 288 VLWKLDNGNYHLGVHIADVAHYVKEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICS 347 Query: 273 LRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN---TGDWQPE 329 L R VL+C M ++ +G + + + A + S +L Y++V+ L D + + Sbjct: 348 LNEGVDRLVLSCDMEITPEGERV-SYDIYPALMRSHGRLTYNKVNQALRADVPDSDLEDK 406 Query: 330 SEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIV 389 + ++ +A + + + RH + + P+ + I+ EKG+ +DIV R A +++ Sbjct: 407 YVKVRPMLKDMAALHEVLYKKRHARGAIDFEEPEAKIIVDEKGKPVDIVLHSRGTAEKMI 466 Query: 390 EEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV--DAEEVLTLD 447 E M+ AN A K +Y VH + GL+V D ++ LD Sbjct: 467 ESFMLLANETVAEAYYRKKVPFLYRVHETPEADRISRFFEFCSAFGLNVKADPNDIKPLD 526 Query: 448 GFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMIN 507 + + L + + R A S +P HFG+ + Y +TSPIR+Y D + Sbjct: 527 LQKVVTKTLGTSEESVVQMMMLRSLKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMV 586 Query: 508 HRLLKAVIK-------GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT 560 HR++ A ++ E E Q + + R + ER D ++ D+ G Sbjct: 587 HRMIHAYLEEGMGDDVKEHFKEELSEAADQTSMQERRSIDTERATNDLKMTEYMADQVGN 646 Query: 561 DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVY 618 +F A + ++ GM V+L +N I L +D+ E Y Sbjct: 647 --KFEAVVSSVTSFGMFVQL-ENTVEGLIHISNL---KDDYYSYDEKSMTLTGRTTHKKY 700 Query: 619 KVTDVIDVTIAEVRMETRSII 639 KV I V + +E + Sbjct: 701 KVGMPIKVVLTNANVEQHQLD 721 >UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID=A1WUS9_HALHL Length = 842 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 163/666 (24%), Positives = 274/666 (41%), Gaps = 30/666 (4%) Query: 1 MFQDNPLLAQLK--QQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYF-IPPPQMKKVMHG 57 M +D L+ + + + G V G GFL D + P QM+ ++HG Sbjct: 71 MERDGQLVRNRRRGYLVVDHSELVRGRVMGRPDGSGFLLPDGTGDRLALSPRQMRCLLHG 130 Query: 58 DRIIAVIHSEKER--ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 DR +A I E E E++E + G+ ++ +VP++ L+ + A Sbjct: 131 DRAVARITGRDEHGTPQGELVEILERGNRQITGRFFEEHGVGFLVPENKRLQQDVLL--A 188 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 ++G+ AVAE+ P + R + Q + V H + + P Sbjct: 189 PDGRGGAEDGELAVAEILAQPNE-RRQPIGRIIQVLGRTIHVGEEDMVAARIHGIPMDWP 247 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V E+ + R DL L VTID A +D DDAL+ + +L+VA Sbjct: 248 AEVEKEVAAFGEEVPEADKEGRTDLRRLPLVTIDGADAKDFDDALYCEPTAKG-WRLVVA 306 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ G+ LD+ A++R + Y P +PMLP LS+ LCSL R + C M Sbjct: 307 IADVSHYVRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNGLCSLNPKVDRLAMVCDML 366 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDW--QPESEAIAEQVRLLAQICQ 345 L +G + + F+ A I+S A+L Y+Q + + + + + + L + + Sbjct: 367 LQGNGKVLRS-RFYRAVIQSAARLTYEQAAAAVVDGDRKVRSAIGDEVVRHLENLHGLYK 425 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + R + D + ++G V+ + R +++VEE MIAAN+C A+ L Sbjct: 426 TLRKARDERGAIDFDTTETEMRFDDEGRVVAVEPTERNDFHKVVEECMIAANVCTAKFLL 485 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFL 464 +Y VH + L L GL + + T + ++ + +P + Sbjct: 486 KNKVPSLYRVHERPGEQKLEQLKEFLAQAGLELGGGDEPTGKDYGRIMEQARERPDRHLI 545 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET----- 519 ++ + R AE + HFGL LEAY +TSPIR+Y D++ HR + VI G Sbjct: 546 ETVLLRSMQAAEYRPDNAGHFGLALEAYTHFTSPIRRYPDLVIHRGIGHVIDGHRGRSFP 605 Query: 520 -ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 + + R A RD L +L D G + F I ++ G+ V Sbjct: 606 MTHNDLVTLGEHCSMAERRADEATRDAEMTLKCEYLSDHLGDE--FTGVIAAVTSFGLFV 663 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L + L + + V + Y+++D + V + V + R I Sbjct: 664 SLEGVYVDGLVHITNLESDFFHFDSVG-HRLVGDRTGKEYRLSDRVRVRVGRVDKDDRKI 722 Query: 639 IARPVA 644 VA Sbjct: 723 DLEVVA 728 >UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1J0_DESAD Length = 746 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 158/688 (22%), Positives = 268/688 (38%), Gaps = 49/688 (7%) Query: 1 MFQDNPLLA-QLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHG 57 + ++ ++ + + G ++ G FL D +K +I ++ HG Sbjct: 55 LVREGKIIKIGSAYGVVEKMNLVTGKLQVQRSGAAFLLPDDKKRKDIYIHTKNLRDAWHG 114 Query: 58 DRIIAVIHSE---KERESAEPEELVEPFLTRF-VGKVQGKNDRLAIV-PDHPLLKDAIPC 112 DR+ I +RE ++E F V ++ + P P L I Sbjct: 115 DRVTVAITGSHWGGKREEGRVVRVLERGKQVFPVRVIRPMGGTALLCHPTDPRLDFGIVV 174 Query: 113 RAARGLNHEFKEGDW---------AVAEMR-----------RHPLKGDRS--FYAELTQY 150 + +E D AE+ P + + + + Sbjct: 175 EPDEAVVNEPVLDDNGREIYPAESVDAEVDFTRVSRGDILLVAPGEQINPSLWEGRILKM 234 Query: 151 ITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLVREDLTALDFVTIDS 202 + DD V + A H + P V ++ RED+ + FVTID Sbjct: 235 LGDEDDAIVQEAIVKANHGIPTAFPGKVLAVADALPDEPVEEDFADREDMRDIPFVTIDG 294 Query: 203 ASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPML 262 A+ +D DDA+F + + +L VAIAD + ++A S LD+ A R + Y P PM Sbjct: 295 ATAKDFDDAVFVEKIA-GGYRLRVAIADVSHYVAMESPLDREALKRGNSYYFPKSVEPMF 353 Query: 263 PRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQV-SDWLE 321 P LS+ LCSL + R + + G ++ F A I S+ +L Y+QV + Sbjct: 354 PEALSNGLCSLNPDVNRLAMTATIEFDKSGAPVNS-SFAPAVIRSQGRLTYEQVYQGVIL 412 Query: 322 NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEP 381 + Q + ++L ++ ++ + R+ + D P+ + +G +DI Sbjct: 413 GEKEEQESLGDLLPMLKLCEELARKINKRRNARGSLEFDLPEPEILFNLQGRTVDIRPRC 472 Query: 382 RRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAE 441 R A++IVEE MIAAN A L +K +Y VH G D L +L+ G+ Sbjct: 473 RNFAHQIVEEFMIAANEAVAEFLTEKEIGCLYRVHPGPDEEKLTNLFKVLRKIGISKQIP 532 Query: 442 EVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIR 500 + +T ++ ++ + ++ + R A+ + HFGL E Y +TSPIR Sbjct: 533 DPVTPQTLQEVIKDSEGTDQEYIVSRLLLRSMKQAKYEPDNEGHFGLASECYCHFTSPIR 592 Query: 501 KYGDMINHRLLKAVIKGE----TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKD 556 +Y D++ HRLLK + E + I ++ R AER++ L FLKD Sbjct: 593 RYADLVVHRLLKVALGDEHQAIPGQKQLGRIGSAISGTERTAMEAEREILKRLTIIFLKD 652 Query: 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET 616 K G + F I I+ G V + A + L S V + Sbjct: 653 KVGEE--FTGVISSIAEFGFWVEFQEVMAEGMVRLSSLGDDYYTFW-SDRQMIVGERTGH 709 Query: 617 VYKVTDVIDVTIAEVRMETRSIIARPVA 644 +++ I V + V +E V+ Sbjct: 710 AFRLGQKITVRLESVSLELLEANLSLVS 737 >UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMX4_9FIRM Length = 697 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 150/650 (23%), Positives = 271/650 (41%), Gaps = 32/650 (4%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 K ++ + +G + T KG F + FIP ++ H D + I EK Sbjct: 56 YKYSIYQKKETLKGKISFTTKGNAFFISEEDIDDIFIPKKELNHANHNDDVEIEIIKEKR 115 Query: 70 ---RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + +++ VG + +VPD I + +G + K D Sbjct: 116 MNSKAEGRVLKVLNRNSNLIVGTFTENKNFGFVVPDDIKCNYDIFIK--KGDKNSAKTDD 173 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD-- 184 V ++ P K ++ + + I D L + + + + E+ + Sbjct: 174 KVVCKLVEFPDKK-KNPEGVVIEVIGNKKDKNAQIISLLKDMEIPYKFSNKINKELEELT 232 Query: 185 ------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 E R D L VTID A +D DDA+ +D L V IAD + ++ + Sbjct: 233 QTDIKKEIKNRVDFRNLFTVTIDGADAKDFDDAISIDKKDND-YVLYVHIADVSHYVKKD 291 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 SKLD+ A R + YL + +PMLP LS++LCSL N + + +M + +G +++ Sbjct: 292 SKLDREAYKRGNSVYLIDYVVPMLPEVLSNNLCSLNPNTDKLSITVKMIIGKNGNVKE-Y 350 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 +F+ + I S +LVYD V+++LE + E + E + ++ ++ + R N + Sbjct: 351 KFYESVINSNYRLVYDDVTNFLEGKK-HFYDDETLKENLLVMKELDEILTNKRINRGTID 409 Query: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418 + P+ G+ G+V +I + +ANRI+E MI AN + + IY +H Sbjct: 410 FNFPEIAITFGKDGKVENIAKKENGLANRIIESFMICANEVVGKHFGELDIPIIYRIHSK 469 Query: 419 FDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE-LDAQPTGFLDSRIRRFQSFAEI 477 + L L + + ++++ ++ + D + F++ I R + A+ Sbjct: 470 PPEDKLEILKNNLSRLNIKMKPIDMISSKYLSEIIDQFKDTNKSDFINYSILRSMTKAKY 529 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-----ETATRPQDEITVQMA 532 S HFGL Y +TSPIR+Y D+ HR LK + + D + + Sbjct: 530 SPNIDIHFGLATFLYCHFTSPIRRYADLTVHRTLKNYLHSNIEIPKNYISYLDITSNHIN 589 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP 592 + L AER + D F+K+K G F IV ++ G+ V+L +N + Sbjct: 590 DTEVLAIDAERKLEDIKKVEFMKNKIG--QVFKGIIVSVTSFGLFVQL-ENTVEGLV--- 643 Query: 593 FLHAVRDELVCSQENGT--VQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 + D+ E + + + V+ + ++V +A+V T I Sbjct: 644 KYEDIMDDYYEFDEQTLTAIGRRTKNVFDIGMGVEVIVAKVNEITNEINF 693 >UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7NCL8_LEPBD Length = 761 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 157/662 (23%), Positives = 274/662 (41%), Gaps = 39/662 (5%) Query: 7 LLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS 66 L + L + +G + + FGFL+++ + S FIP + M+GD ++ I Sbjct: 99 LKRNGRYTLPEKEGFVKGEISISSGNFGFLDINGEASVFIPGAYLNTAMNGDTVLVRILK 158 Query: 67 EK----ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 + ++ E ++++ VG + + P + I + L Sbjct: 159 QSSDGTKKREGEVYKVIKRNRNVIVGVFENNLSFGFVRPRNS--PKDIYI--PKKLIRGA 214 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 K GD ++ + + + + D L +E++ P+ V E+ Sbjct: 215 KTGDLVAVKVDFWGDEERK-PEGAIVSILGSPKDTEALISSLLLNEGIEEKFPNEVLQEL 273 Query: 183 L-------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 DE R+DL LD +TID + +D+DDA++ + D +L V+IAD + ++ Sbjct: 274 DKIDEDISDELKNRKDLRHLDIITIDGSDAKDLDDAVYVEKTEDG-YKLFVSIADVSYYV 332 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 E ++LD A R + YL IPMLPR+LS++LCSL NE + M L G + Sbjct: 333 RENTELDMDALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDKRGKVV 392 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQP------ESEAIAEQVRLLAQICQRRGE 349 N +F+ + I+SK ++ Y+ V+ LE + + + I E ++ + ++ + Sbjct: 393 KN-DFYKSVIKSKYRMTYENVNTILEKNEESEEYKVLYDKYRKIDEMLKNMLELSKIIRN 451 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 + + + P+ + +L E V DIV R A RI+E+ M+ AN A L + Sbjct: 452 NKKRRGSIDFELPEIKVVLDENKAVKDIVLRSRGEAERIIEDFMVIANETVAEKLFWEEI 511 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRI 468 IY VH D A AL L G + E + F + P G+L I Sbjct: 512 PAIYRVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERTTGLPEGYLIHKLI 571 Query: 469 RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-------KGETAT 521 R A + + HFGL + Y +TSPIR+Y D+I HR+L I + Sbjct: 572 LRAMQRARYANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLGRSIEKFMNEKEKAKYG 631 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 + I ++ R+ E D +++DK G + A + +++ + + L Sbjct: 632 ANFEAIASSISRTERVADKLEEDSVKIKLIEYMQDKIG--QVYIARLSGMNKNKIFMEL- 688 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 +N + RD + +EN V + Y + + V+I I Sbjct: 689 ENHIEV---VYNVTTARDNFIYDEENFKIVDKRNNESYTMGSTMKVSIVSASYAKMEIEV 745 Query: 641 RP 642 P Sbjct: 746 IP 747 >UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37_ANAPD Length = 708 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 157/664 (23%), Positives = 273/664 (41%), Gaps = 37/664 (5%) Query: 3 QDNPLLAQLKQQLHSQTPRA--EGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGD 58 ++ ++ K+ + G + + G+GF D + + FI M K + D Sbjct: 48 ENKIRVSNKKRIMPLTDDEINLIGKISMAQAGYGFFISDNRDFEDVFIKRDNMNKAHNND 107 Query: 59 RIIAVIHSEK---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 R+ + K + E++E VG Q ++PD + I A Sbjct: 108 RVKIELIKRKEKGRKAEGRVIEIIERAKDEIVGSFQKNKGFGFVIPDDRSYGEDIFI--A 165 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 ++ K D V E+ +P D + + I +D + + H L + Sbjct: 166 EKFFNKAKNKDKVVVEIINYP--KDGKPEGRIKEIIGGKNDKNIEILSLIRAHGLPYQFS 223 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 E E R+DL L VTID ++D DDA+ + + L V Sbjct: 224 KETKKESLYVKDTVNEIELEGRKDLRDLFTVTIDGRDSKDFDDAISIEKNGE-NYDLYVH 282 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD ++ +G+ +D A R + YL IPMLP LS+ +CSL NE R ++ +MT Sbjct: 283 IADVAHYVKKGTAIDNDAYERGNSTYLFNIVIPMLPEVLSNGICSLNPNEDRLAISLKMT 342 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 ++ G + DN EF+ + I S +LVYD V+ +L+ + E E I E++R+ ++ + Sbjct: 343 INDKGKVIDN-EFYESVINSDHRLVYDDVNAFLDKNDENVYEDELIKEKLRIFDELREIL 401 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + + + + + E G VL+I R N+++EE M+AAN A + Sbjct: 402 NTMREKRGSIDFNFSESQIDVAEDGRVLNISNFERGSGNKMIEEFMLAANETVASLFAYM 461 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDS 466 IY +H ++ L T G ++ + L F ++ E++ + ++ Sbjct: 462 DFPFIYRIHEKPKEEKIESFKKALNTMGYNIRGND-LHPKDFQQILEEVEGKDVESVINI 520 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE 526 + R A+ S HFGL Y +TSPIR+Y D+I HRL+K I + + Q Sbjct: 521 LMLRTMQKAKYSEHRDMHFGLSTSFYTHFTSPIRRYPDLIVHRLVKKFIHNKLTSLNQTS 580 Query: 527 I-------TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 + ++ R + ERDV D L +++ G + F I I+ G+ + Sbjct: 581 LEKTITNNADHLSMTERRSEDCERDVEDLLKCKYMTRFIGDE--FYGNISAITEFGIFIE 638 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETV-YKVTDVIDVTIAEVRMETRSI 638 L DN D ++ + + Y + D + + + +V R+I Sbjct: 639 L-DNTVEGL---FMYKFSNDRYEYLEDKMKAFNTDKKIFYSIGDRVKIRVMDVDTYQRNI 694 Query: 639 IARP 642 Sbjct: 695 DFDL 698 >UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria RepID=A6F7X7_9GAMM Length = 647 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 308/643 (47%), Positives = 413/643 (64%), Gaps = 1/643 (0%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MF+DNPLL+QLKQ + TP EG VK TE+GFGFLE D +SYFI PP MKK+MHGDRI Sbjct: 1 MFRDNPLLSQLKQNMRQNTPSVEGTVKGTERGFGFLEADDGESYFIAPPHMKKIMHGDRI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 A I + ++ SAEP+ LVE LTRF+ ++ ++L ++ D P++ I + Sbjct: 61 KAYIETNGDKTSAEPDTLVEAKLTRFIARISMTKNKLTVLADSPVINMPIRAKLVGLGKQ 120 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 + +GDW VA+++ H LK D SF AE+T ++ D PWWVTLAR +L K+ P + Sbjct: 121 KVNDGDWVVAQLKSHALK-DGSFAAEVTGFVATATDPNAPWWVTLARQDLAKDVPAMPDS 179 Query: 181 EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 + R DLT F TIDSAST+DMDDAL + + L++ VAIADPT++I S+ Sbjct: 180 VEFKDDTTRIDLTDKPFFTIDSASTQDMDDALLIEKTAEGNLKVTVAIADPTSYIPADSE 239 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 L+K A RAFT YLPG NIPM+PRELSD +CSL A E RP L C T+ DG + + EF Sbjct: 240 LNKIAAERAFTVYLPGRNIPMMPRELSDSVCSLVAGEKRPTLCCTYTIQEDGALAEEFEF 299 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 F A I S+ KL Y QVS+W+E +AEQ++ LA + R +WR N+A+VF D Sbjct: 300 FTAWITSQHKLSYTQVSNWIEEVSTEWQPEAQLAEQLQSLATFARHRQQWRKNNAIVFPD 359 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 +PDY F L E G VL I E RRIAN+++EE M+AANI AAR+ R G++N H GFD Sbjct: 360 QPDYSFELDETGNVLAIHVEHRRIANQMIEETMVAANITAARLFRQNGDVGVFNTHAGFD 419 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE 480 P D + LL HG+ E + +L G+ +L+R L + LDSR+RR QS++ IS Sbjct: 420 PEKIDLVVELLTEHGIECTKEHIQSLPGYVELQRTLAEKANPALDSRLRRMQSYSIISAS 479 Query: 481 PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM 540 HF +GL+ YATWTSPIRKYGD+INHRL+KA + +A ++ + M+ERRR +RM Sbjct: 480 AERHFAMGLDGYATWTSPIRKYGDIINHRLIKATLTNGSAPSATEDEVILMSERRRQHRM 539 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AERD+ WLY +L + F A I+D++RGG+RVRL++NGA+AFIPA LH + E Sbjct: 540 AERDISSWLYVDYLTPAVESKQAFEASIMDVNRGGLRVRLLENGAVAFIPASLLHDNKKE 599 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + C E G + IK + Y + DVI V IAE+ E R+I+A+PV Sbjct: 600 VKCLVETGQISIKDQVEYSLGDVIYVNIAEINKEKRNIVAKPV 642 >UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQN3_9PLAN Length = 770 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 150/664 (22%), Positives = 263/664 (39%), Gaps = 34/664 (5%) Query: 5 NPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK-------SYFIPPPQMKKVMHG 57 + L+ + + G T KGFGF+ ++P + +G Sbjct: 59 SHLIKRANAENAKAAQTIVGGFHRTAKGFGFVRPLGTPKSAERTADIYVPAKRTSDAANG 118 Query: 58 DRIIAVIHSEKE-----RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPC 112 D + + + + E E+VE RFVG + + + D + P Sbjct: 119 DTVRIRMFRTRGMNGESKLCGEVIEIVERETHRFVGTYNEAHGQALVQVDGNVFTQ--PI 176 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 + D V E+ R P + + + V + ++L + Sbjct: 177 SVGDPGVKGARLDDKVVIEIVRFPSHFHDG-EGVIVEVLGARGAPGVDLLSVMREYDLPE 235 Query: 173 EAPDGVATEMLDEG--------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 E P+ + R D T +TID D DDA+ L + L Sbjct: 236 EFPEAALEVAREMADAFDESIGEDRRDETGETIITIDPFDARDFDDAISLTKLDNGHWLL 295 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD ++ EGS LD A+ RA + YLP IPMLP +S++L SL+ N++R Sbjct: 296 GVHIADVAHFVPEGSALDTEARNRATSIYLPDKVIPMLPEVISNNLASLQPNKIRYAKTA 355 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQVRLLAQI 343 ++ + DGT + E F + I S + Y++V ++L + W+ + + + + V + ++ Sbjct: 356 KIEFTPDGTRV-HTEVFNSAIRSVRRFTYEEVDEYLADRDAWKKKLTPPVHQLVGDMHEL 414 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 E R + P+ + L G V E +++I+EE M+AAN A Sbjct: 415 AMTLRERRFQRGSIELLMPELKLDLDNDGAVTGAHVEKNTESHQIIEEFMLAANEAVADK 474 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-G 462 L ++ F + VH DP +AL ++ G+ D + + + ++ P Sbjct: 475 LHNQELFFLRRVHDSPDPRKLEALTEFVRDVGIECD--SLQSRFEIIRALDKVKGLPEQA 532 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR 522 ++ R A S E H+ L E Y +TSPIR+Y D+ HR+ + G+ + Sbjct: 533 AVNYATLRSMKKAVYSPEEIGHYALASECYCHFTSPIRRYPDLTIHRMYNDLATGKKPVQ 592 Query: 523 PQDEI---TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 D + ++R + AERD+ L +K G + A I + G+ V+ Sbjct: 593 DYDAMVAEGEHCSQREQRAASAERDLVKIKLLNHLSEKIGME--MEAVITGVESFGLFVQ 650 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 ++ A I L + V + +++ DV+ V+IA V +E R + Sbjct: 651 GLELPADGLIHIDALQDDYYHYD-RTTHSLVGNRDGNAFRLGDVLKVSIARVDLEKRELD 709 Query: 640 ARPV 643 R + Sbjct: 710 FRLI 713 >UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8V5_ACIC5 Length = 920 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 158/749 (21%), Positives = 268/749 (35%), Gaps = 122/749 (16%) Query: 11 LKQQLHSQTPRAEGVVKATEKGFGFLEV---DAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 L Q HS+ G + G+GF+ DA FIPP ++ M GD+++ + + Sbjct: 61 LAQAAHSRDNLVAGRLDLHRDGYGFVRPAQRDAAGDIFIPPNEIGTAMQGDQVLVEVFPK 120 Query: 68 K---ERESAEPEELVEPFLTRFVGKVQ-------------------GKNDRLAIVPDHPL 105 + +R + ++ VGK + +VP Sbjct: 121 RPGEDRMAGRIVRVLTRRNPTVVGKFHYGNVGGNAGGGRRGGRERGPQYPGHYVVPFDER 180 Query: 106 LKDAIPCRAARGLN------------------HEFKEGDWAVAEMRRHPLKGDRSFYAEL 147 + + L + EG E+ P R + Sbjct: 181 MTQPVIIPLDEPLPEAVVASPHRVLGEEVRQQFDDLEGLVVDVEITEWPTPT-RPARGRV 239 Query: 148 TQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEG-------LVREDLTALDFVTI 200 + + D V + + +H+L P+ V E + R D L VTI Sbjct: 240 IEVLGEEDAFGVDVEMMIRKHHLPHVFPENVLAEAREVAHLDGEVVAARRDFRDLPIVTI 299 Query: 201 DSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIP 260 D + D DDA+ + D +L V IAD ++ S LD A++R + Y P IP Sbjct: 300 DGETARDFDDAVLVREHGDGTWELQVHIADVAQYVTPESALDLEARLRGTSVYFPDRAIP 359 Query: 261 MLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL 320 MLP+ELS D+CSLR E R VL+C M + A G + E I S ++ Y QV L Sbjct: 360 MLPQELSTDICSLRPGEDRLVLSCLMQMDAHGQVT-GYEVTEGVIRSAQRMTYTQVQAIL 418 Query: 321 ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAE 380 + + + + + + ++ Q R + D P+ E G + + Sbjct: 419 DGDAETRDAFRPLVPEFERMYRLAQILNAKRERRGSIDFDLPEPVIEFDEFGAMKAVTRA 478 Query: 381 PRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA 440 R ANR++EE M++AN C A L + IY +H +P + + G + Sbjct: 479 ERLWANRLIEEFMLSANECVASWLENLAVPAIYRIHEKPEPRRVVEFEEIAASFGYSLGI 538 Query: 441 EE-----------------------------------VLTLDGFCKLRRELDAQPTG-FL 464 +T + KL +L +P + Sbjct: 539 GNLPVKRFHTRGERRDQRRDGRGGRRETRAHEVAEDIAVTPQMYQKLTAKLAGKPEERIV 598 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR-- 522 + R A S + HF L AY +TSPIR+Y D++ HR+ KA+++ Sbjct: 599 AYLMLRSLKQARYSEKNEGHFALAAPAYTHFTSPIRRYPDLMVHRIAKALLEAGVDGHGV 658 Query: 523 ----------------------------PQDEITVQMAERRRLNRMAERDVGDWLYARFL 554 I + ++ R AER++ +W +F+ Sbjct: 659 VAMGDARVHKVAPSDAGQAQEAAPFDEVELAAIAQETSDTERRAAEAERELVEWKKIKFM 718 Query: 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQI 612 +D+ G D F I+ ++ G+ V L D +P L A+ + +EN + Sbjct: 719 RDRVGED--FDGLILSATKYGLFVELEDLFIEGLVPIQSLGALDGDRYSYRENTREIIGD 776 Query: 613 KGETVYKVTDVIDVTIAEVRMETRSIIAR 641 +++ + V + V + + Sbjct: 777 GHGRTFRIGQRVRVLLDRVDAMEKRLQFS 805 >UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2V6_DESAC Length = 722 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 156/653 (23%), Positives = 269/653 (41%), Gaps = 26/653 (3%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAV--I 64 + + + +++ +K G G L + D ++ ++ M GD ++A+ Sbjct: 55 MRRGRYRVNRPLKLVCARLKHQSSGHGVLTDCDDGHELYVATFRLGGAMDGDEVMALELP 114 Query: 65 HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 S R E+V+ +G + + + +V R + Sbjct: 115 ESRGRRPEGWIVEVVKRSRETLLGVCEKNSRQGGVV-FRSEQGGLTFDVDDRSRDVSLLV 173 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 G V + R+P + + + V T+ R + V Sbjct: 174 GQVVVLRIDRYPAMHENGL-GHIVDVLGHAGSPEVDILSTVHRLGIPNRFSAAVEQAASA 232 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 + R DL +L FVTID A D DDA+ D +L VAIAD ++ Sbjct: 233 IAAEVPPEVVAARADLCSLPFVTIDGADARDFDDAVCLARSEDGHWRLHVAIADVGYYVE 292 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 EGS LD A+ R + Y P +PMLP+ LS+ +CSL+ + R V+ +T G Sbjct: 293 EGSALDLEARERGTSVYFPSRCLPMLPQALSNGICSLQPEKERLVVVAEITFDDLGR-RL 351 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 N E + ATI S+ +L+Y+QV L+ P SE + E + + + Q R + Sbjct: 352 NFEAYRATIRSRQRLIYEQVQQVLDGQVPEIPVSEPLTEMLHQMQHLAQSLRHRRLHRGA 411 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + D P+ I ++G ++ I R ++R++EE M+ AN A + + G++ +H Sbjct: 412 IDFDLPEANVIFDDEGRIVRIGRRSRLDSHRLIEEFMLCANEAVAEFILSRRETGMFRIH 471 Query: 417 MGFDPANADALAALLK--THGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSRIRRFQS 473 D + + L G+ +D E+ ++ +L E++ F ++ + R Sbjct: 472 ESPDIRSMQSFQQFLATLNLGITLD-EDGISARELRRLLHEVEGTSLEFSVNRILLRSMK 530 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE---TATRPQDEITVQ 530 A E HFGL +AY +TSPIR+Y D++ HRLL ++ G A P + Sbjct: 531 QARYDAENSGHFGLASDAYCHFTSPIRRYPDLLVHRLLLQILDGRADWEADEPLPRLADA 590 Query: 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIP 590 R AERD+ D +F++DK G TR++ I ++ G V L + + Sbjct: 591 ATAAERRAMEAERDIVDLRKCQFMEDKIG--TRYSGYITSVNAFGFFVELDEFFVEGLVH 648 Query: 591 APFLHAVRDELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 L D V +E V ++V D ++V + +++ R I Sbjct: 649 IRTLSD--DYYVFDEERLILVGQARRKTFQVGDTVEVEVWQIKSAAREIDFVL 699 >UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6L0_9BACT Length = 727 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 156/678 (23%), Positives = 260/678 (38%), Gaps = 57/678 (8%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIH 65 + + + L G+++ G L E K FI P + MH D+++A + Sbjct: 64 IRKDRYVLPQTADLVTGILQVHANGHAHLLSETPGVKDVFISAPNLGTAMHSDKVVARLM 123 Query: 66 ------SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLN 119 + A +++E VG +Q + ++PD P L+ I + Sbjct: 124 HEGREQRRGGAQEARVIKILERANDTIVGTLQSSKNFFYVIPDDPRLQHNIYVKPE---P 180 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 + GD V + + E+ + + V + ++ L PD V Sbjct: 181 KGAQVGDKVVVRFEEWESRHV-NPEGEVIEVLGPAHAPGVDMLSIIRKYQLPMAFPDAVE 239 Query: 180 TEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 E DE RED VTID +D DDA+ + L +L V IAD Sbjct: 240 REAEKIFETVHPDEIARREDCRGQFIVTIDPDDAKDFDDAIHVERLARG-WRLGVHIADV 298 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ G LD+ A+ R + YL IPMLP LS+ +CSL+ R + Sbjct: 299 SHYVRPGHPLDREARKRGNSTYLADRVIPMLPERLSNGICSLKPGVERLTFGAFIDFDES 358 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-------------------EA 332 G I F + I+S A+L Y Q LE+ + Sbjct: 359 GKIRKA-RFARSVIKSAARLTYRQALAILEDRPVPATPNYERGGKVHLDAKPVPLNVTPE 417 Query: 333 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA 392 + E+V+L ++ + R + D P+ + L ++G + + I++++VEE Sbjct: 418 LRERVKLAWELASLLRKNRFAAGSLDLDFPEVKVWLDDQGRAVRLEKMDNDISHQLVEEF 477 Query: 393 MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKL 452 M+AAN A+ L+D+ +Y +H DP L ++G A ++ +L Sbjct: 478 MLAANEVVAKALKDRKIPTVYRIHEDPDPDRLADYRELAISYGFR--AGDLTQRRELQRL 535 Query: 453 RRELDAQPTGF-LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL 511 +P + L + + A +T+P H+GL Y +TSPIR+Y D++ HR Sbjct: 536 LAATRGKPEEYALKLGLLKSLKRARYATDPVGHYGLAKVNYTHFTSPIRRYADLLVHR-- 593 Query: 512 KAVIKGETA--TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG--TDTRFAAE 567 + GE EI ++ R + AERD F + + A Sbjct: 594 --ALAGEKLGGVGAVGEIAAHISTTERTSADAERDSTMLKKMEFFQRQLTARRPEEMRAI 651 Query: 568 IVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT--VQIKGETVYKVTDVID 625 +VD+ G+ V L D I L D+ V + Y++ DV+ Sbjct: 652 VVDVRSYGLVVELPDCLITGLIHVSSLP---DDFYQFDSTRLRFVGRRKNKTYQIGDVLQ 708 Query: 626 VTIAEVRMETRSIIARPV 643 V ++ V R I PV Sbjct: 709 VIVSRVDAYKRQIDFVPV 726 >UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=Q04E22_OENOB Length = 726 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 139/666 (20%), Positives = 247/666 (37%), Gaps = 46/666 (6%) Query: 17 SQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVIH---SEKERES 72 + G A KGFGF++ D Q FI M D ++A I + Sbjct: 7 ASENFINGTFVANPKGFGFVKTDEGQDDLFIGHSNTNLAMQSDEVLASIIHPGKDGRVPE 66 Query: 73 AEPEELVEPFLTRFVGKVQ---------------GKNDRLAIVPDHPLLKDAIPCRAARG 117 + E+++ VG + + I + L++ +G Sbjct: 67 GKIEKILSHANQEVVGIFRSGVNENDLPNRSNLNPNDYIGTITFNDEKLQEYKYLVDKKG 126 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFY-AELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 L ++ D A + P + +T I D V + + P+ Sbjct: 127 LQP--QDRDSVTATTSQFPTSDRPNLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSNYPE 184 Query: 177 GVATEML----------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 A + E R D +TID A T+D+DDA+ LP+ L V Sbjct: 185 DAAQQAKNIPQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGV 244 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ + LD A R + YL IPMLP E+S+ + SL NE R ++C M Sbjct: 245 HIADVSNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCEM 304 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 ++ +G + + + + I S A++ YD ++ L+ + ++E + + + + Sbjct: 305 EINQEGQVVKH-KIQPSIIRSHARMTYDSINKILDGDQAETAKYADLSEMIHQMGDLHKI 363 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + + + I+ KG D++ R I R++E M+AAN A Sbjct: 364 LAAMRKKRGAIEFETDEAEIIVDAKGHPTDVLVRDRGIGERMIESFMLAANETVAEHFDH 423 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRRELDAQPTG-FL 464 +Y VH + ++ G + A + L F + P + Sbjct: 424 LHVPFLYRVHEVPEGDKVVNFFEFMRAIGHPIKADPKNLRPKDFQAALDAVAGLPEEMMI 483 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-------G 517 + + R A S +P HFG+ + Y +TSPIR+Y D++ HRL+K K Sbjct: 484 QTMMLRATKQAHYSPQPIGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGTGPSST 543 Query: 518 ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 + +I + +ER R AER D +A +++D G + + + G+ Sbjct: 544 DAVRGKLPQIGIDTSERERRAVDAERATNDMKFAEYMEDHIGD--IYDGVVNSALKFGLF 601 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 + L N + + + ++ + + V + ETR Sbjct: 602 ISLP-NTIEGLAHISTMKDDIYQYD-ETRQALIGRTKHRIFAIGQKVKVRVINANKETRK 659 Query: 638 IIARPV 643 I + Sbjct: 660 IDFELI 665 >UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC4_9BACT Length = 682 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 152/638 (23%), Positives = 283/638 (44%), Gaps = 23/638 (3%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERESAE 74 + G + G+GFL D + + FIP +M MHGD++ + + ++ Sbjct: 55 KNTPTEITGKLDLHPNGYGFLSHDGEGRDIFIPKNKMNGAMHGDKVTISPETFRGKQEGR 114 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRR 134 E+VE + VG+++ + +VP + I + + ++K+ + E+ Sbjct: 115 VVEIVERSEQKIVGRIENLAGIMRVVPMTRKVNTYIYLTSNK---VQYKDDTVVLVELTH 171 Query: 135 HPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT-------EMLDEGL 187 P +G + ++ + + D + + L R++++K P+ + E++ Sbjct: 172 FPSEGS-AARGQVNKVLGMLSDPRIEDEIVLNRYDIDKVYPESIEKYVEKTSPELMKNPG 230 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 R DL +L VTID + +D DDA+ + + + L V IAD ++ G+ +D A Sbjct: 231 ARTDLRSLPTVTIDGETAKDFDDAISIEKTEN-EFILYVHIADVCHFVQPGTPVDNEAYR 289 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 R + Y P F +PMLP LS+ LCSLR NE R L ++T + DG + F+ + I S Sbjct: 290 RGTSFYFPEFAVPMLPESLSNGLCSLRPNEDRLALTAKITYTKDGQRKKAY-FYRSIINS 348 Query: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367 +L Y+ V+D LE + + + +AI + ++ ++ + R ++ D P+ F Sbjct: 349 DRRLTYNSVNDVLE--KNTKEKDKAILDLLKDSKELAGKIMVRRAKAGMLDFDFPETTFE 406 Query: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADAL 427 L E GEV I+ R +++RI+E MI AN + L +Y +H DP + Sbjct: 407 LDENGEVTAIIPAERHLSHRIIEHFMIEANEVVSEFLEKHTKKSVYRIHDKPDPMKLEDF 466 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFG 486 A L T G+ V ++ +T K+ ++ L + R + AE +T HFG Sbjct: 467 AGLAATFGVDVTVKD-VTPKDVKKINEAVNNSDYADILGGALVRTMAKAEYNTNNIGHFG 525 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP--QDEITVQMAERRRLNRMAERD 544 L ++Y +TSPIR+Y D++ HRL+ + G D+ E + AERD Sbjct: 526 LASDSYTHFTSPIRRYPDLMVHRLICNTLFGTEYHSEAGLDDACKLSTENEQRAENAERD 585 Query: 545 VGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS 604 + + ++L F A ++ + G+ + + + + + Sbjct: 586 ISKFKKLKYLAKHVDEP--FGAVVMSVGAFGLNIYIESVMLKGTVSLESIPGDVYQF-MK 642 Query: 605 QENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 +E +++ D+I+V + + M+ + P Sbjct: 643 KEQIVRGRVTGKMFRAADLIEVMVERIDMDMQEAYFFP 680 >UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria RepID=Q3IK27_PSEHT Length = 749 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 157/693 (22%), Positives = 278/693 (40%), Gaps = 58/693 (8%) Query: 1 MFQDNPLL-AQLK-QQLHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHG 57 M +D L+ +Q K Q+ Q GV+ GFGF+ ++K FI Q+ V G Sbjct: 62 MERDGQLMFSQHKGYQVIDQALLVSGVITLHADGFGFVNYSASEKDLFIAKNQLAHVFEG 121 Query: 58 DRIIAVIHSEKERESA-EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 D + + + + S + +++E T G ++ + +V D+ + + Sbjct: 122 DIVQILQEAASHKRSNNKLIKIIEHKTTHLAGILKRQGTDYVLVADNTKCPQKVQVAQCQ 181 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 N G + ++ ++P + ++T+ + + + L RH + Sbjct: 182 LANTSV--GQYVNTKITQYPT-FRHATQVQITEVLGLPHSAGMETKLALRRHGVADSWSK 238 Query: 177 GVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 + + + L R D FVTID +D DDA++ + +L+VAI Sbjct: 239 DLLAQASSLGNEVTEQDKLARVDYRLFPFVTIDGEDAKDFDDAVYCERTEQGNWRLLVAI 298 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD + ++ LD A+ RA + Y PG +PMLP LS+ LCSL +E R VL C MT+ Sbjct: 299 ADVSHYVKPNDVLDIEAQQRATSIYCPGQVVPMLPEALSNGLCSLNPHEDRLVLVCDMTI 358 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-----SEAIAEQVRLLAQI 343 S DG + F I S A+L Y Q + + + ++ ++ L + Sbjct: 359 SQDGQVTQA-NFTEGLIHSHARLTYTQAHAVIAKPHSSSAKQLAELNADVSPLIKNLHYL 417 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARV 403 R + D + + L + ++ I R A+R++EE M+ AN+C A+ Sbjct: 418 YLDLSAARKLRGAIDFDTQELKLNLNKNQKITSIEPIERNDAHRMIEEFMLCANVCTAQF 477 Query: 404 LRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG- 462 L G++ VH G L ALL L + + T + KL + + Sbjct: 478 LDKHQIPGLFRVHAGPQQKKLQTLRALLAEKRLQLGGGDKPTPADYNKLLNNISQRSDAS 537 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT- 521 + + + R QS AE S HFGL +AYA +TSPIR+Y D++ HR ++A I+ + Sbjct: 538 VIRTLLLRSQSQAEYSANNQGHFGLAYDAYAHFTSPIRRYADLVTHRAIRAKIQAKQQNG 597 Query: 522 ------------------------------RPQDEITVQMAERRRLNRMAERDVGDWLYA 551 + +++ + + R R+V L Sbjct: 598 LQRAISFLNVFANKASSVSKLAKKAYPYNLESIETLSLHCSAQSRKANDISREVESALKC 657 Query: 552 RFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQ 611 +++ G F A I +S G V L G +P + E V + Sbjct: 658 SYMEKYLGD--TFTATISGVSSAGFFVELDCTGVEGLVPVSSFS--QGEFVFNAAKQQWS 713 Query: 612 IKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 + + + + ++VT+ + + R + + Sbjct: 714 NSKQK-FTIGERVNVTLKSIDLRQRKMSFSLAS 745 >UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMK5_9FIRM Length = 679 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 154/639 (24%), Positives = 262/639 (41%), Gaps = 29/639 (4%) Query: 21 RAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERE---SAEPE 76 +GV K+ FGFL D + + +I ++ D + I + E Sbjct: 14 VLQGVYKSYGPRFGFLITDEEHEDVYIADRDHLNAVNNDIVEVRIKKGETGRHNTEGEVL 73 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 ++E FV + + +P + + RG E G + E+ R P Sbjct: 74 RIIERAENTFVCTYEMTSFGGKAIPIDEKI--DMVIEIPRGEELEAVTGARVIVEVTRWP 131 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------LDEGLVRE 190 + ++T+ I + D + + +A+H L + E + + E Sbjct: 132 G-ARANAEGKVTELIGYKGDKGIDIDIIIAQHRLPHVFSKALMAEADALSKEMKQEKGVE 190 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 D +L VTID +D+DDA++ + QL V IAD + ++ +GS +D A R Sbjct: 191 DFRSLPIVTIDGPDAKDLDDAVYCVKKENGHYQLGVHIADVSRYVRKGSLIDDEAYRRGT 250 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + YL IPMLP +LS+DLCSL +E R ++C M ++ DG + + + + + Sbjct: 251 SVYLADRVIPMLPFQLSNDLCSLNHDEDRYAMSCIMDVAPDGKVAAE-KITPSMVRVARR 309 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 Y +++ E TG + + +R L + R N + D P+Y+ IL E Sbjct: 310 CNYPEINQAFE-TGVASDDLKPYLPMLRNLKACADILRKNRENRGALEFDFPEYKVILDE 368 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 +G L I R A +++E+AMIAAN AR L +Y +H D +L + Sbjct: 369 EGTPLRIEKRNRGDAEKMIEDAMIAANETVARFLEATGHTSVYRIHDHPDGNKLLSLKKM 428 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGL 489 + G+ + +L + + + R A STE HFG+ Sbjct: 429 MAIFGMAEKLPKEPEPKDMQRLMESMKGKESEAVVQVMTLRSLPQACYSTENKGHFGIAS 488 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKG-------ETATRPQDEITVQMAERRRLNRMAE 542 Y +TSPIR+Y D++ HRL++ ++ + T +E + E Sbjct: 489 TCYTHFTSPIRRYPDLMVHRLIRQALRNRLNKSQLKKQTEFLLRAVEHCSETEQNAVETE 548 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELV 602 RD D ++ G F A I ++R G+ V L DNG + + DE V Sbjct: 549 RDTTDLKMTEYMIPFVGEP--FDAHITGLTRFGIFVGL-DNGVEGLVHIDSMDD--DEYV 603 Query: 603 CSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 ++ TV ++G Y + + VT+ + E R + Sbjct: 604 YQEDTMTVKGLRGGKKYTMGMPVRVTLVKADKEKRELDF 642 >UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQN7_BDEBA Length = 858 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 149/644 (23%), Positives = 264/644 (40%), Gaps = 27/644 (4%) Query: 17 SQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSEKE--RES 72 + G +K GFGF D ++ +IP M+ +M D++ + EK R Sbjct: 2 QKKKILTGTIKRHPDGFGFFIPDDKEHPDVYIPRHSMEGIMTNDKVAVEVTPEKGGERFR 61 Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 E + ++ VG+ N+R ++ + + + K+ + AE+ Sbjct: 62 GELDHVLSRGTKTVVGRFFKMNERTGLI-RDEGKGWGQDLKIKIEDSMQAKDKELVAAEI 120 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--------D 184 +P G + F ++ + I D + +++ E E Sbjct: 121 TSYPDDG-KPFTGKVIEIIGDAMDPLTDLKRVIRANHIPLEFSKATLEEAEHFSEVPDEK 179 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 + R DL +TID A+ +D DDA++ + L + L VAIAD + ++ G+ +DK Sbjct: 180 DFKGRRDLRDKALITIDGATAKDFDDAVYVETLNEG-FLLYVAIADVSHYVKIGTAIDKD 238 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A R + Y+P F +PMLP LS+ LCSL + R L M G + + +F+ A Sbjct: 239 AYERGTSVYMPNFVVPMLPEVLSNGLCSLNPHVPRLCLVAEMLFDFTGELVKS-DFYEAV 297 Query: 305 IESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 +ESKA++ Y + + ++ + + + + + L+ + + R + + P+ Sbjct: 298 MESKARVTYGEAQEIIDGNE--VEKHKHVKDHILRLSDLAKILMAKRFKEGSLDLEIPET 355 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 ++ G +DI R A+R++EE M+AAN+ A+ L + +Y +H + Sbjct: 356 ELVIDGAGVPVDIQRSERLFAHRLIEEMMLAANVAVAKFLSSREIPALYRIHEPPNEMAI 415 Query: 425 DALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGP 483 L L G K E + +P L+ R S A+ + Sbjct: 416 RTLEKYLANFGGKTKLGSGKLQKRLTKALEEFEGRPEAQILNILTLRSMSQAKYNMNNVG 475 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEIT---VQMAERRRLN 538 HFGLG E Y +TSPIR+Y D+I HRLLK + +D++ ++ + + Sbjct: 476 HFGLGFEFYTHFTSPIRRYPDLIVHRLLKTQVMPNSRYRLMSEDDLATAGTILSAAEQRS 535 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR 598 AER V ARF++ G + F I +++ G+ V L + + L R Sbjct: 536 TKAERQVQSIKKARFMQKFIGQE--FDGMISSVAKFGVFVLLREYDIDGLVRLDDLGGDR 593 Query: 599 DELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 E + V + Y + D I + + E I Sbjct: 594 FEFD-EENLRLVAKRSGFAYSIGDSIRIQVVAADPEQGQINFAL 636 >UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=C3W9Q8_FUSMR Length = 710 Score = 573 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 144/662 (21%), Positives = 253/662 (38%), Gaps = 32/662 (4%) Query: 2 FQDNPLLAQ--LKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDR 59 D L+ K L +GV F F++ + + FIP + GD Sbjct: 49 VSDGELIKNNRGKYNLPETQGYIKGVFSIIRDRFAFVDTEDEG-IFIPKSGFNGALDGDT 107 Query: 60 IIAVIH---SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 + + ++ E ++ +G Q + + P H I + R Sbjct: 108 VFVRLTAGMKGDRKKEGEVVRVISRDKDIVIGIFQKNKNFGFVTPTHS-FGRDIYIPSIR 166 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 + V + +R E+ + + D + R + + P Sbjct: 167 --MKNAENNQLVVVRITFWGD-NERKPEGEIVEILGNPYDTKNMIEALIIREGMSETFPP 223 Query: 177 GVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 E E R+DL L +TID +D+DDA++ + L + +LIV+I Sbjct: 224 EAMAEARRIPMEIGKKELEGRKDLRHLPIITIDGDDAKDLDDAVYVEKLKNGNYKLIVSI 283 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD + +I EGS LD+ A R + YL +PM P+E+S+ +CSL NE + C M + Sbjct: 284 ADVSHYIPEGSVLDREAYKRGNSVYLVDRVLPMFPKEISNGICSLNPNEDKLTFTCEMEI 343 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRG 348 G + D+ + + + I++ ++ Y+ V+ + + I + V + ++ + Sbjct: 344 DKKGKVVDS-DTYKSVIKTAYRMTYNNVNKMIAGDEETLKTYAPIKDMVMDMLELSKIIR 402 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 E ++ + D P+ + +L EKG+V I + R + RI+E+ MIAAN A L Sbjct: 403 EVKYKRGSIDFDIPEIKLVLDEKGKVEYIKSRDRGESERIIEDFMIAANETVAEKLFWLE 462 Query: 409 GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSR 467 +Y H D L L + + E + F K+ + + L Sbjct: 463 IPSVYRTHEKPDMERIKNLNETLAKFKYRIHSLEEIHPKQFQKIIEDSKERGINLLVHKM 522 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET----ATRP 523 I A+ + E HFGL Y +TSPIR+Y D+ HR+L +V+ G + Sbjct: 523 ILMALKQAKYTVENYGHFGLASGYYTHFTSPIRRYADLTVHRILNSVLHGYPNKKTIIKN 582 Query: 524 QDEI---TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 +E+ +++ R E + ++ DK G + + A IV S + Sbjct: 583 MEELPVTCAHISKTERAAMKVEDESVKIKLVEYMMDKVGEE--YDATIVGFSNKRVFFET 640 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 D+ F + A +E Y + D VT+ + I Sbjct: 641 EDH-VECF--WDVVSAKHYYEFDDREYVMRDTDTGKFYSIGDKYKVTLVRASLSELEIEV 697 Query: 641 RP 642 P Sbjct: 698 TP 699 >UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWX7_9BACL Length = 708 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 137/655 (20%), Positives = 260/655 (39%), Gaps = 29/655 (4%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVI-- 64 L K + EGV++ +KGF F+ +IP + M GD ++ + Sbjct: 51 LPSEKFLYVKEALEIEGVIRLHQKGFAFVYSADLGIEVYIPKGFTQSAMTGDVVLVKVDS 110 Query: 65 -HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 + + ++++E VG + + D + I A+ N Sbjct: 111 VYKDDRNLEGIVQKVLERNTKYTVGTLTNAKFFSFVKSDDKNIVKYIKITNAKNFN--LV 168 Query: 124 EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML 183 +G + E+ + + + I DD V + +HN+ E P V + Sbjct: 169 DGSKVLVEITDYSKVSFEDHKGIIIKSIGHKDDPGVDILSVIYKHNIPNEFPQEVLEQTE 228 Query: 184 D------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 D T VTID +D+DDA+ +L V IAD + ++ E Sbjct: 229 KISDEIKLEDKYRDCTNEMVVTIDGDDAKDLDDAISVIKTKKG-YRLKVFIADVSRYVTE 287 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 S LDK A R + YL +PMLPR+LS+++CSL +R + C + + G ++ Sbjct: 288 DSPLDKEAANRGCSVYLADRVVPMLPRKLSNNICSLNPQVLRYTICCDIDFNTKG-FPES 346 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 + + A I+SK +L Y +V++ + + E + ++ ++ + R + Sbjct: 347 YDIYPAVIKSKGRLTYKKVNEVYADNKETIEEYKEYVPMLKTALELSTKIRANRETRGAI 406 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 D+P+ + ++ E GEVLDIV R I+ +++E+ M++AN IY +H Sbjct: 407 DFDKPESKVVVDENGEVLDIVLRERGISEKLIEDFMLSANEVIGEHFYWMQVPFIYRIHE 466 Query: 418 GFDPANADALAALLKTHGLHVDA--EEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFA 475 + + G EE+ LR+ L + + R + A Sbjct: 467 EPKMEKLRQFFDIAASLGYRTKGKIEEIEPYMLANMLRKFKGEVVETMLSTILLRTMNQA 526 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR--------PQDEI 527 S HF L + Y +TSPIR+Y D++ HR+++ + + ++ Sbjct: 527 RYSINNIGHFALATKYYTHFTSPIRRYPDLLVHRMIRTYLFNGDVSDQTIDNFISRLPDL 586 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +E + ER+V ++ + F + ++ G+ + L + Sbjct: 587 AESSSEYEKRAVDCEREVDRMKKCEYMLKY--QEQTFRGIVSSVTNFGVFITLERSNIEG 644 Query: 588 FIPAPFLHAVRDELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + ++ D Q+N + + + VY++ D + V +A V +E + I + Sbjct: 645 LVHIKAMND--DYYTYDQKNMLLIGRRKKKVYRLGDEVIVKVANVDLENQEIDFK 697 >UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1D4N8_MYXXD Length = 1182 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 158/658 (24%), Positives = 264/658 (40%), Gaps = 38/658 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEV--DAQKSYFIPPPQMKKVMHGDRIIAVIHS 66 + + + EG++ GFGF+ + F+PP + ++ + DR++ + Sbjct: 156 RRGRFSEVEEDGLLEGILHVHRDGFGFVHPLSGEGDNVFLPPHEAQRALDNDRVVVAVSG 215 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 R +V+ VG K + P L I L +EGD Sbjct: 216 RPPRLEGRIVRVVQRRRELAVGTYVVKGRYAVVYPTDSSLPGPIRVP----LTQMAREGD 271 Query: 127 WAVAE--MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 + + L DR + E+ + E P V E Sbjct: 272 LVKVQLGIGAQMLDPDRGLHGEVAGSLGKPGTPSAEVLGVAYSQGFSDEFPPEVMAEADR 331 Query: 183 ------LDEGLV--REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234 +E R DL A+ +TID D DDA+ + D +L+VAIAD T + Sbjct: 332 YAVTVTEEEVRGEHRRDLRAIPLITIDGEDARDFDDAVCVEDRADG-WRLVVAIADVTHY 390 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + EGS L+ A RA + YLP +PMLP LS+ +CSLR +E R + MT G Sbjct: 391 VWEGSALNAEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMTFDRRGH- 449 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 + + + A + S A+ Y++V D L+ P A L + + + R Sbjct: 450 RRSYDLYPAVMRSVARCTYNEVQDVLDGKD--VPHRNAHKPHFERLMSLARALMKMRKER 507 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 + D P+++ +L E G + R+ ++R++EE M+AAN A +++ +Y Sbjct: 508 GAIDFDLPEHKVVLDEDGLPARMDKRERKDSHRLIEECMLAANEAVATFFQNEGLPTVYR 567 Query: 415 VHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQS 473 H DP AAL + +G + E+ ++ +L P L+ + R Sbjct: 568 FHGEPDPEKLATFAALAEAYGFKMRVEDGVSSKELDAFVSQLQGHPEQRALNQLLLRSMM 627 Query: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQ------- 524 A ++ H+GL E Y +TSPIR+Y D++ HRLLKA KG ++ Sbjct: 628 QAVYTSSRVGHYGLAAEHYLHFTSPIRRYPDLLVHRLLKAHWARKGRKPSQSMLEREEDQ 687 Query: 525 -DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 +++ Q +ER R ER+V + +KD+ G + FAA + I+ G V L + Sbjct: 688 LEDMAAQCSERERAAMQVEREVVSFYACLLMKDRVGEE--FAATVAAITDFGFFVELDEV 745 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + A L + ++ +V + V + V + + I Sbjct: 746 HVEGLVKAETLGPGA---KLDKLTHSLVYANGRRVRVGQKLRVRLTSVNVTAKKIDFE 800 >UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QPD3_CHLP8 Length = 798 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 143/690 (20%), Positives = 253/690 (36%), Gaps = 65/690 (9%) Query: 4 DNPLLAQLKQQLHSQTPR-----AEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHG 57 + L+ + +G + G+GF++V+ FI + + +HG Sbjct: 122 EEHLVEGRHFPQPGKERYKVDQTYQGKLTTHPNGYGFVDVEGFDDDIFIGADMLGQSLHG 181 Query: 58 DRIIAVIHS----------EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLK 107 D + ++ +R +V LT VG +Q +N R + PD + Sbjct: 182 DEVEVLVTKVPETYVSKQSPHQRCEGLIVNVVSRKLTTIVGTLQRENRRFLLKPDQRKIL 241 Query: 108 DAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLAR 167 I + K+G +A + + A + + + + V Sbjct: 242 PEIHISV--KDAKKAKDGAKVLA--GDLEFLKNGTIQARVIEILGQAGESQVEVSAIARG 297 Query: 168 HNLEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD 219 +++ + T ++ R D+ D TID +D DDAL + L + Sbjct: 298 LGIDETFEQELLTFAEKVREEITDEDLKERLDIRDKDVFTIDPVDAKDFDDALSIEKLGN 357 Query: 220 DK-LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEV 278 ++ V IAD + ++ E S LDK A+ RA + YL IPMLP LS+ +CSL Sbjct: 358 GGGYKVGVHIADVSHYVPENSALDKEARKRATSVYLVDRVIPMLPSRLSEKVCSLNPGVD 417 Query: 279 RPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVR 338 R + ++ G + EF I SK + Y+ V ++ E+++ Sbjct: 418 RMAFSVFFNITKKGEV-KKFEFHKTVIHSKRRFTYEDVQQIIDAGKG------DYVEELQ 470 Query: 339 LLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANI 398 L + + R + + + RF LG GE ++++ + R ++R++EE M+ AN Sbjct: 471 ALESLSKTIRAQRMESGGLEFETEEVRFKLGSNGEPVEVIKKERLDSHRLIEEFMLLANR 530 Query: 399 CAARVL-------RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA------EEVLT 445 A L IY VH LA ++ G + ++ Sbjct: 531 TVAAYLTARYAENEKNPHPVIYRVHGAPQMERVQVLANFVRKIGFDLKLDRKGKDSATVS 590 Query: 446 LDGFCKLRRELDAQPTGFL-DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGD 504 +L +++ FL + + R S A + HFGLG E Y +TSPIR+Y D Sbjct: 591 SRALRELLQKVHGTNVEFLVNELVLRSMSKAVYMSSNDGHFGLGFEHYTHFTSPIRRYPD 650 Query: 505 MINHRLLKAVIKGETATRPQ------------DEITVQMAERRRLNRMAERDVGDWLYAR 552 ++ HR+L R E+ ER ++ AER+ Sbjct: 651 LVIHRILFEYETTRKKRRKVTPERITEISATITEVCQITNEREKIATEAERESVKLKQVE 710 Query: 553 FLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI 612 ++ G + I + G+ VR+ D + L E V Sbjct: 711 YMSSHLGN--TYGGVITGATEYGIYVRMTDFAIEGLVHMRNLKDDYYEYD-EATYSLVGR 767 Query: 613 KGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + ++ + V + EV + R+I Sbjct: 768 RKHRRLQIGQRLKVKVHEVDLTRRTIDLTL 797 >UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=A1AWH7_RUTMC Length = 705 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 153/659 (23%), Positives = 282/659 (42%), Gaps = 30/659 (4%) Query: 1 MFQDNPLL---AQLKQQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMH 56 M +D L + + + G V A KGFGF+ +D K + QM+ V H Sbjct: 58 MVRDQQLNCDQRGVYHKFSEKNWVMTGTVIANPKGFGFITLDKGGKDLRLSSKQMQLVFH 117 Query: 57 GDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 GDR+ + +++ + ++++ VG++ + D +V D +K I Sbjct: 118 GDRVKVRLLNQRGDT--QIIKVIKSI-ETVVGRLHLEKDGAYVVVDDKRIKHNISIS--- 171 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 +N E + + ++ + P E+ Q + D V L R+ + + Sbjct: 172 KINREHLDEQIVIVKITKSPTLKSL-AVGEIVQILGSYMDEGVETDSALYRNGIPVDFSP 230 Query: 177 GVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 + + R D+T + VTID + D DDA++A+ +L+V+I Sbjct: 231 EALIQTDKLPSIVTDSDKKGRIDITKMKLVTIDDEDSRDFDDAVYAQTTSKG-WKLVVSI 289 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD + ++ EG LDK A R + Y P +PMLP LS+ LCS+ + R + C M + Sbjct: 290 ADVSHYVKEGLYLDKDATDRGNSVYFPHHVVPMLPEVLSNGLCSINPDVERLCMTCEMNI 349 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTG-DWQPESEAIAEQVRLLAQICQRR 347 G + D +F+ A + S A+L Y +VS LE+ D + ++ + + L + + Sbjct: 350 DTHGNLLD-YKFYPAVMLSHARLTYTKVSQILEHHDVDLTQQYASVMDNLNTLYDLYKAL 408 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + ++ DR + + + + G++ +I+A R A++++EE M+ AN +A+ L Sbjct: 409 KYAKIKRGVMDFDRIESQILFNDNGKIDNIIARSRNDAHKLIEECMLMANQASAKFLNHH 468 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDS 466 +Y +H + L GL ++ F K+ + + + Sbjct: 469 NEDFLYRIHPKPTVEKVEVTRQFLTAIGLTLEGGTQPDSKDFAKVLASAKGRDDETIIKT 528 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE--TATRPQ 524 + R A + HFGL E Y +TSPIR+Y D++ HR +K V+ + ++ Sbjct: 529 VVLRTMKQAVYTPVNEGHFGLAFENYTHFTSPIRRYPDLLVHRAIKRVLDKKSRKPSKKM 588 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 EI ++ R A RDV WL +++DK G F I ++ G+ + L D Sbjct: 589 LEIGAHLSMTERRADDASRDVEQWLKCEYMRDKIGN--TFNGVISGVASFGIFIELTDVF 646 Query: 585 AIAFIPAPFLHAVRDELVCSQ-ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 I + D + + + +Y++ + I + +A V ++ R + P Sbjct: 647 VEGMIAIRDMKD--DYYIFDDIHHQLKGERTGKIYQLGNTIKIQVASVNLDDRQMAFVP 703 >UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W7V2_9FIRM Length = 700 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 156/664 (23%), Positives = 284/664 (42%), Gaps = 37/664 (5%) Query: 3 QDNPLLAQLKQQLH---SQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHG 57 +DN + K+++H ++ G + + G+GF D + K FI + + Sbjct: 47 KDNEIKISSKKKIHPLSTEDKSLIGQINLAQGGYGFFISDNKDFKDVFISANNLNTANNL 106 Query: 58 DRIIAVIHSEK---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 DR+ I K + + E++E + VG Q ++ D + I Sbjct: 107 DRVRIKIIKNKEFGKNAEGKVVEIIERNSNKIVGLYQKNKGFGFVISDSNNITSDIYVDE 166 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 + K D + E+ +P KG ++ + + D+ V + H L++ Sbjct: 167 KNS--KKAKSNDKVLVEIINYPKKGS--PEGKVIEVLGNKDEANVDLISIVKSHGLKENF 222 Query: 175 PDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 V E L + REDL L VTID ++D DDA+ + ++ L V Sbjct: 223 SKKVKKEAVFIEKDVDLSKVKNREDLRDLFTVTIDGRDSKDFDDAISIEK-DNEDYILYV 281 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ E S++DK A R + YL +PMLP ELS+ +CSL NE R L+ +M Sbjct: 282 HIADVSHYVKEKSEIDKEAYQRGNSTYLYNLVLPMLPEELSNGICSLNPNENRLSLSLKM 341 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 ++ G + D + + A I S +LVYD V+D+L+ + E + E++ L + + Sbjct: 342 KINDKGKVID-YKIYKALIRSNYRLVYDDVNDYLDYNKKVY-DDEVLLEKLDLFNDLYKI 399 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R + + + + + +G+VL+I R AN+++EE M+ +N A + Sbjct: 400 LKKKREKRGSIDFNFTESQIDVSNQGDVLNISLFERGSANKMIEEFMLVSNETIASLFAF 459 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLD 465 IY +H ++ +L T G ++ +E L F + +++ + ++ Sbjct: 460 MDFPSIYRIHEKPKEEKVESFKNILNTLGYNIKGKE-LHPKDFQDILKQIKGKDDESLIN 518 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE------- 518 + R A+ + HFGL + Y +T+PIR+Y D+I HRL+K I + Sbjct: 519 MLMLRTMRKAKYTNYRDMHFGLATKYYTHFTAPIRRYPDLIVHRLVKDFIDNKLESINQT 578 Query: 519 TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 + + + ++ R + ERDV D +++K G RF I I+ G+ V Sbjct: 579 SLEKKLSKFAEHLSITERNSEDCERDVEDLYKCKYMKKFIGE--RFEGIISSITDFGIFV 636 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L +N E + + + I YK+ + + + V ++ R+I Sbjct: 637 EL-ENTVEG-CFMYKFSDSHFEYI-EDKLSCINIDKNKRYKIGQKVMIEVKNVDLDKRNI 693 Query: 639 IARP 642 Sbjct: 694 DFDL 697 >UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3771C Length = 721 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 156/654 (23%), Positives = 268/654 (40%), Gaps = 31/654 (4%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRII-AVIHSE 67 +K L S+ + + FGF E D YFIP M M DR++ A I S Sbjct: 73 KGMKVALCSRAGVVPATITRLSRTFGFAETDEGIEYFIPGKCMLGAMPNDRVLLADIASR 132 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 E +++E + G+++ + +VPD I + + F+ GD Sbjct: 133 TGEPEGEVVDILEFGSNQLTGRIEFVDGEPYLVPDTAAKNHMII---SVRESIPFENGDK 189 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGL 187 +AE+ + + ++ + L H + PD V E + Sbjct: 190 VLAEIV-YRGRRHAEHKVKIILVFGSSEYAASCASSILMIHGAPTDFPDDVKKEAVKISE 248 Query: 188 V---------REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 REDL + TIDSA ++D+DDA+ + + +L V IAD + ++ Sbjct: 249 GGVQDYSFNNREDLRDMPIFTIDSAESKDLDDAVSVERTKNG-YRLGVHIADVSHYVKGN 307 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S+LDK A R + Y IPMLP+ELS+ +CSL +E R L+ + L ++G + + Sbjct: 308 SELDKEAMRRGTSIYYADKVIPMLPKELSNGICSLNPDENRLTLSAFIDLDSEGNML-SY 366 Query: 299 EFFAATIESKAKLVYDQVSDWL--ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 F + I S+ K VY +++ L E + + + + ++ + + ++ ++ + + Sbjct: 367 RFCKSVIRSRVKGVYSEINKILAGEESAEIREKYASVRDVLAVMDELADKLIAKKERRHA 426 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 + + + I+ E G ++ R + RI+EE M+ AN AA++ R+K +Y +H Sbjct: 427 PEIETTESKLIIDENGICCGVLPRERGKSERIIEEFMLTANEAAAKLAREKEIPFVYRIH 486 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFA 475 A + L LL GL ++ R ++ + R + A Sbjct: 487 EAPPEAKVENLHELLPKFGLECPHFTEFKPHHAAEILRSAKGTDKFEAVNLMVLRSMAKA 546 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-------IT 528 + STEP HFGL LE YA +TSPIR+Y D+ HR++ ++ G Sbjct: 547 KYSTEPVGHFGLVLEDYAHFTSPIRRYPDLAIHRIITDILAGYDNKWLSKRYSGFAVNAA 606 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + + ER+ D A ++K G F A I ++ G L N Sbjct: 607 ERSSAAEIRAVTIERECEDCYKAEYMKAHIGE--TFRARISSVTEFGFYAELP-NTVEGL 663 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 I L E S+ + T Y + +DV + V + +I Sbjct: 664 IHIRTLP--EGEYDYSEPVSLTEKFTGTTYSLGMEVDVICSAVNVSEGTIDFVL 715 >UniRef50_C9R3S6 Exoribonuclease II n=7 Tax=Gammaproteobacteria RepID=C9R3S6_AGGAD Length = 659 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 319/655 (48%), Positives = 428/655 (65%), Gaps = 17/655 (2%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQDNPLLAQLKQQ+H R EG VK+T+K +GFLE + +KSYFI PP MKKVMHGD+I Sbjct: 1 MFQDNPLLAQLKQQIHDSKERVEGTVKSTDKAYGFLECE-KKSYFIAPPAMKKVMHGDKI 59 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKN-DRLAIVPDHPLLKDAIPCRAARGLN 119 A I + ++E AEPE L+EP LTRF+ KV+ +L ++ DHP + I + + Sbjct: 60 SATIEKQGDKEQAEPEALIEPILTRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQNKSVK 119 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 E +EGDW VA ++ HPL+ DR FYA++TQ+I DD PWWVTLARH +E G Sbjct: 120 KELQEGDWVVASLKTHPLRDDRFFYAQITQFICHADDELAPWWVTLARHEQPREPVQGQD 179 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKAL----PDDKLQLIVAIADPTAWI 235 + + RE+LTAL FVTIDS +T+DMDDAL+ + L QL+VAIADPTA+I Sbjct: 180 QYEMQDKETRENLTALHFVTIDSETTQDMDDALYIEPLTSNNEQTGWQLLVAIADPTAYI 239 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 + S+++K AK R FTNYLPGFNIPMLPRELSD+LCSL+ NE RP L C + G I Sbjct: 240 SLDSQIEKDAKQRCFTNYLPGFNIPMLPRELSDELCSLKPNETRPALVCYIQTDLQGNII 299 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQ-PESEAIAEQVRLLAQICQRRGEWRHNH 354 +F A ++SKAKL Y +VSD+LE + PE++ +A+Q+ L Q R +WR H Sbjct: 300 APAKFVLANVQSKAKLTYSRVSDYLEGKENAWQPENQDMAQQIHWLHQFSLARTQWRKTH 359 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 AL+FK++PDY F+LGE G+V +I AE RRIAN+IVEE+MI ANICAA+ L+ L GI+N Sbjct: 360 ALLFKEKPDYSFVLGENGKVQEIKAEYRRIANQIVEESMIIANICAAQFLQKNLQCGIFN 419 Query: 415 VHMGFDPANADALAALL----------KTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL 464 H GFD + L E + TL+G+C++R +++ +L Sbjct: 420 THSGFDKKFLENAHHFLLASLANEENKAELQARYTVEHLATLNGYCQMRHDIEPIEGDYL 479 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + R+RRF +FAE E PHFGLGL YATWTSPIRKY DM+NHRL+KA + +P+ Sbjct: 480 EFRLRRFLTFAEFKAELAPHFGLGLNGYATWTSPIRKYSDMVNHRLIKAYLAHRPYEKPE 539 Query: 525 DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNG 584 + + V++ E RR NR+ ERD+ DWLY R+L DK F AE+ DI+RGG+RV L+ NG Sbjct: 540 ESVLVRLQEARRQNRLVERDIADWLYCRYLADKVAEKVEFEAEVQDITRGGLRVLLLANG 599 Query: 585 AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 A FIPA LH ++E+V + + +K + +YK+ D++ V + EV+ TRSI+ Sbjct: 600 ASIFIPASTLHDNKEEIVINTDEIAFYVKDQRLYKIGDILRVQLTEVKEATRSIM 654 >UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea psychrophila RepID=Q6ALZ0_DESPS Length = 721 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 153/656 (23%), Positives = 272/656 (41%), Gaps = 29/656 (4%) Query: 8 LAQLKQQLHSQTPRA-EGVVKATEKGFGFL-----EVDAQ---KSYFIPPPQMKKVMHGD 58 L K + S ++ A +GFGFL ++AQ + ++ M + +HGD Sbjct: 74 LVGGKTYVVSNKELFCTAILDANPRGFGFLHNMESNIEAQLPLQDPYVSQYNMSQALHGD 133 Query: 59 RIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 +++A I + R AE +++ L R G + + +VP+ L + Sbjct: 134 KVLAYIFRTTQNGRSEAEIFHVIKRGLNRIAGVIAIDGSKGIVVPEDKRLPFVVQVTIPE 193 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 ++ + GD + +++ D+ L + D + + L + Sbjct: 194 DMS--VRHGDGVIVTLKQTATP-DKVRQGMLLESFGSPDSVKSQIRFVVEKSVLPDKFSG 250 Query: 177 GVATEM-----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 E+ D R DL + FVTID + +D DDA+ + +L VAIAD Sbjct: 251 ETYAELEQMGGEDHDPKRVDLRDIKFVTIDGDTAKDFDDAVCVEKR-GVNFRLYVAIADV 309 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ GS LD+ A R + Y PG IPMLP +LS++LCSL +E R L + + Sbjct: 310 SHFVKVGSALDRDAYERGTSVYFPGTVIPMLPEKLSNNLCSLVPDEDRLTLTAILDIDRA 369 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWR 351 G ++ F + I S+ + Y +V + L+ G + +A ++ ++ + E R Sbjct: 370 GKLQKK-SFCRSLIRSQHRFTYTRVQEILDTPGSVSADEKAFLSMLQEAEKLARILKEKR 428 Query: 352 HNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG 411 + P+ +L +GEV ++ + +I+EE M++AN A ++ Sbjct: 429 AIRGALGFTMPESIILLDSEGEVENVARSEAHFSQKIIEEFMLSANEAVAEFFTEQGCSA 488 Query: 412 IYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRR 470 +Y +H D A G+ + + + F ++ E +++ + R Sbjct: 489 LYRIHEKPDVDRVKEFATYAHNLGMQLPPPDN-SPAWFGRVIEESKGSEKEFVVNNLLLR 547 Query: 471 FQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV---IKGETATRPQDEI 527 A+ S + HFGL Y +TSPIR+Y D++ HR L + + ET R + Sbjct: 548 SMKQAKYSADNVGHFGLAATDYTHFTSPIRRYPDLMVHRELCRLVGYLPAETKNRSAQQA 607 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 ++ R R+ AER++GD L F++ G F A I ++ G V L D A Sbjct: 608 GDFLSGRERVATKAERELGDRLKCIFMERYIGE--TFKAIISGVTDTGFFVELKDFPISA 665 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 P L N + + + D ++VT+ + +I PV Sbjct: 666 SAPIEELVEDMYLFDYRGHN-LIGQNKGAFFSLGDSVEVTVQRIDRARNRVIVAPV 720 >UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=A7HAA8_ANADF Length = 910 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 161/645 (24%), Positives = 256/645 (39%), Gaps = 38/645 (5%) Query: 20 PRAEGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIHS-EKERESAEPE 76 G +K G+GF+ F+PP + + + GD + I R + Sbjct: 95 NEVVGTLKKHRDGYGFVARIDRKGDDVFVPPGEAAQALDGDLVRVEIVPARGGRTAGRLV 154 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 E++E +G + R +VP L +A+P ++GD + Sbjct: 155 EVIERRRRLLIGTYHARGARSFVVPADEELGEAVPVP----ETAAAQDGDVVKVAL---- 206 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDEGLV 188 G + + I + V P+ V E ++ Sbjct: 207 EPGTARLQGAVVEAIGRPGEPRVEVLKVAYAKGFADVFPEPVRAEAEATPDRVRPEDRQG 266 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPD--DKLQLIVAIADPTAWIAEGSKLDKAAK 246 R DLTAL VTID D DDA+ + L +L+VAIAD ++ G+ LD A Sbjct: 267 RRDLTALPLVTIDGEDARDFDDAVHVERLEGRKGLYRLVVAIADVAHYVRPGAALDAEAG 326 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 R + Y P +PMLP LS+ +CSL + R + + + G + E + + Sbjct: 327 RRGTSVYFPMQVLPMLPERLSNGICSLNPDVDRLCMVADLVVDEHGE-TRSAEVYEGVMR 385 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 S A+ Y +V++ + P + E+ L+A++ ++ R + D P+ + Sbjct: 386 SAARCTYTEVANVVAGQS--VPGRDRFRERFLLMAELQEKLTAMRGRRGALDFDLPEAKI 443 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 +LGE GEV+ I PR A+RIVEE M+AAN AR + IY +H D A Sbjct: 444 VLGEGGEVVAIEKRPRNRAHRIVEEFMLAANEAVARWFGSRELPTIYRIHDVPDEEKLQA 503 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAEISTEPGPHF 485 L ++HG EV L L+ + R A +TE H+ Sbjct: 504 FLDLAESHGFE--VPEVPGPRALNALLGRFQGHAQQRALNQLLLRAMMQAVYATENIGHY 561 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIK-------GETATRPQDEITVQMAERRRLN 538 GL + Y +TSPIR+Y D++ HRLLK E + E+ +ER R Sbjct: 562 GLAAQHYLHFTSPIRRYPDLVVHRLLKEEWARRQGQPVREPSPAALAEMAAVSSERERAA 621 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR 598 AERD+ + A F+KDK G R+ I + G+ V L + L Sbjct: 622 MEAERDIAAFYAALFMKDKVGE--RYEGVISAVVEFGLFVELKRWFVEGLVRLEDLGGAP 679 Query: 599 DELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + ++ + V ++V D + V + R I + V Sbjct: 680 E--LDTELHALVDRTTGRAFRVGDEVTVDVVSASPIRRRIELKLV 722 >UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H5E0_9FIRM Length = 705 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 158/635 (24%), Positives = 272/635 (42%), Gaps = 35/635 (5%) Query: 31 KGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSE---KERESAEPEELVEPFLTRF 86 K F F+ ++ + FIP + M GD ++ + + + E ++E Sbjct: 76 KNFAFVMLEDESGDIFIPGRFTRGAMPGDSVLVEKFAHPRVEGSDEGEILAVLEQKND-M 134 Query: 87 VGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAE 146 VG V+ RL VPD AI R K+GD E+ + + + Sbjct: 135 VGTVRRIEGRLKFVPDDC---PAISMTIQRDCEGGAKDGDKVAVEILQRGTRQEDHRVG- 190 Query: 147 LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---------LDEGLVREDLTALDF 197 ++ ++ L ++ P+ V E ++ R DL AL Sbjct: 191 VSMRFGSCEEAKRCAKALLYAKDIHTRFPEKVRDEAKKFEDMTVSEEDCKGRMDLRALPI 250 Query: 198 VTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGF 257 TIDSA T+D+DDA+ LP +L V IAD + ++ GS+L++ A RA + Y Sbjct: 251 FTIDSAETKDIDDAVSLTRLPGGGYELGVHIADVSHYVKPGSELNEEAFNRATSVYYADQ 310 Query: 258 NIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVS 317 +PMLP+ LS+ +CSL E+R +C M L DG + D +F + I S+ K VY +++ Sbjct: 311 VVPMLPKSLSNGICSLNEKELRLAFSCLMRLDQDGNLTD-YKFVKSIICSRVKGVYSEIN 369 Query: 318 DWLEN--TGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVL 375 L + Q + + +Q+ + ++ R R + + + + IL E G + Sbjct: 370 ALLAGTADAETQAKYAEVLDQLPAMKELYAHRARLRKERGCIDFESGEVKLILDENGHCI 429 Query: 376 DIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHG 435 D+ + ++EE M+ AN CAA R K +Y VH + + L +LL+ G Sbjct: 430 DVKKRTSGESEAMIEEFMLLANQCAAHFARVKQIPFVYRVHEEPNGEKLERLHSLLQACG 489 Query: 436 LHVD-AEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYA 493 ++ A+EV T + + P +++ + R S A +P H+GL L+ YA Sbjct: 490 INDHFAKEVPTPKELSAILEGVRGTPFEQIVNTGMLRCMSKACYEEKPKGHYGLVLKDYA 549 Query: 494 TWTSPIRKYGDMINHRLLKAVIKGETATRPQ-------DEITVQMAERRRLNRMAERDVG 546 +TSPIR+Y D+ HR++ ++ G ++ + Q +ER L ER Sbjct: 550 HFTSPIRRYPDLAIHRMMTDLLSGTDKETMIVRYTDFAEKASKQSSEREVLAVQIERKAE 609 Query: 547 DWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE 606 D+ A + + G + I +++ G+ V L +NG F+PA L A L + Sbjct: 610 DYYKAEYARRHLGEC--YEGIISGVTQRGIFVEL-ENGVEGFVPASSLTATGTTLT--EG 664 Query: 607 NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + + D + +TI + + Sbjct: 665 IRLSDPASGKTWSLGDSMMITIVRADINLGKVDFE 699 >UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID=B8DP48_DESVM Length = 1037 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 154/656 (23%), Positives = 251/656 (38%), Gaps = 29/656 (4%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIH 65 L L Q G + G GF+ + + ++ P QM HGD+++ + Sbjct: 64 LRGGAWGLVEQLRLVTGTLSIQRSGMGFVLPEEKGRDDIYVHPYQMGDAWHGDKVVVALL 123 Query: 66 SEKER--ESAEPEELVEPFLTRFVGKVQGKNDRL--AIVPDHPLLKDAIPCRAARGLNHE 121 + ++E +V + R P P + + + + + Sbjct: 124 PGRHGKNPEGRIVRVLERGRKEIPARVVRRMGRHSLLCRPADPRMAVSFVVDMS-AVEEK 182 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 ++GD VA G + + D+ V + H++ + P V E Sbjct: 183 AEKGDLVVAAPGEKVEDGLWAATG--LAVLGADDNVLVQERLVKINHDVPGDFPPEVLEE 240 Query: 182 MLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 D + R DL L+FVTID A D DDA++ + +L VAIAD Sbjct: 241 ARDLPAVPGRDDMEGRIDLRHLEFVTIDGAKARDFDDAVYVEEQGTG-YRLWVAIADVAH 299 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ GS +D+ A+ R+ + Y P PMLP LS+ LCSL R + ADGT Sbjct: 300 YVRPGSAMDREAQARSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAETFFYADGT 359 Query: 294 IEDNIEFFAATIESKAKLVYDQVS-DWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 + +F+AA IESKA+L Y QV+ +E + + + + + R Sbjct: 360 PGRS-KFYAAIIESKARLTYGQVNRAIIEKDEKERRLLTPVLPLLERAEALARLLNAKRS 418 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 + D P+ I GE +DI + R ++I+EE MIAAN AR L +K + Sbjct: 419 ERGSLDFDLPEPEVIFNIYGETVDIGRKVRHFGHQIIEEFMIAANEAVARFLTEKNARFL 478 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRF 471 Y VH D + L +L L + + + FL + R Sbjct: 479 YRVHPEPDTEKLEGLFKVLGRTSLAQHLPGKASAKALQGVLQAAKGSDQEFLVNRMALRT 538 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-----KGETATRPQDE 526 A + + HFGL E Y +TSPIR+Y D++ HR L+ + R Sbjct: 539 MMQARYAPDHEGHFGLASECYCHFTSPIRRYADLVVHRALRRTLGLPVNGPLPGERALLT 598 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 I + R+ AER++ + FL ++ G + F I I G V + A Sbjct: 599 IADTLNTNERVAMEAEREILKRITVLFLSERVGEE--FTGVISGIIDFGFFVEFNEVMAE 656 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + L + V + +++ + V +AEV + + Sbjct: 657 GMVRLSSL-DDDYYGYLPERQELVGERTGRSFRLGQTVTVRLAEVNVARLEVNLAL 711 >UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_VIBC3 Length = 678 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 333/649 (51%), Positives = 443/649 (68%), Gaps = 7/649 (1%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQDNP LAQLKQ++ P+ EG +KA++KGFGFLEVD++ SYF+PPP MKK MHGD++ Sbjct: 1 MFQDNPRLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH 120 +A I +E ERE AEP EL+E LTRF+G+V+ +L + PDHP LK + + Sbjct: 61 VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN 120 Query: 121 EF--KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV 178 E +EGDW VA + RHPLKGD F+ +++ IT +D PWWVTLA ++L P G+ Sbjct: 121 EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI 180 Query: 179 ATEMLDEGLV--REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 L + REDLTAL FVTID ST+DMDDAL+A+ LP+ L +AIADPTA+I Sbjct: 181 DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 ++DK A+ R FT YLPG NIPMLPR+L+D+LCSL N+VRP L C +T+ DG I D Sbjct: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300 Query: 297 NIEFFAATIESKAKLVYDQVSDWLE-NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 +I FFAA I+S A+LVYD VSDWLE + + SE IA+ VR L Q R W HA Sbjct: 301 DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWCETHA 360 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 +VF DRPDYRF L +V+ I A+ RR ANR+VEE+MI ANICA + L+ GFG++N Sbjct: 361 VVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNT 420 Query: 416 HMGFDPANADALAALLKTHG-LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSF 474 H GF + L+ +G + DAE + T++GF LRR L Q T +LD+RIR++QS+ Sbjct: 421 HAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSY 480 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-ITVQMAE 533 +EI +P PHF +GL+ YATWTSPIRKYGDMINHRLLKA I G+ + DE + ++A Sbjct: 481 SEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELAL 540 Query: 534 RRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 R+ +++AER+V DWLYAR L D+ +TRF AEI DI+R GMRVRL++NGA+AFIP Sbjct: 541 HRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGAL 600 Query: 594 LHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + ++ + C+ E+GT+ I E VYK+ DV+++ + EV E RS++ +P Sbjct: 601 ILDNKERIECNGEDGTILIDKEVVYKLGDVLEIVLTEVNQENRSLVGKP 649 >UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWH9_9PROT Length = 707 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 174/655 (26%), Positives = 279/655 (42%), Gaps = 34/655 (5%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSE 67 +Q + G V A GFGF++V+ +K +F+P +M +MHGD + + Sbjct: 61 SQRSHAGKTAQQSYTGKVSAHPDGFGFVDVEGREKGFFLPHEEMNGLMHGDIVEVRPVRK 120 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 + RESAE +VE T VG+ + + P + AI A G +GDW Sbjct: 121 RGRESAEVVRIVEHASTVLVGQYLVQGKIAVVQPRSRNMPQAILI--AHGDAGTASDGDW 178 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 E++R ++ + + + +A L+ + P V E Sbjct: 179 VRIEIKR----DAGHVRGKVQEVLGDNLSPSRLIDLIVAEQQLDVDFPPAVIAEANAFAD 234 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + R+DL + FVTID D DDA+ + + V+IAD + ++ S Sbjct: 235 QVLESDIKGRKDLRHIPFVTIDGEDARDFDDAVCVLPRGEG-FEAWVSIADVSHYVRPHS 293 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LDK A R+ + Y P IPMLP +LS+ LCSL + R + RM A+GT +I Sbjct: 294 ALDKEALARSNSFYFPDRVIPMLPEKLSNGLCSLNPHLPRLGMTVRMRFDANGT-RRSIH 352 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 + + I S+A+L Y Q S WLE + E + E + A++ ++ + R + Sbjct: 353 VYESVIHSQARLTYTQASAWLEERDETAVEKPELREMLDDAARLFRKLEKKRKQRGALDL 412 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 D P+ R +L + V+DIVA R IA R++EE M+AAN A + +Y +H Sbjct: 413 DMPEVRALL-QDDVVVDIVASERNIAQRLIEEMMLAANTAVAEYMDAHECALLYRIHPAP 471 Query: 420 DPANADALAALLKTHGLHVDAE------EVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQ 472 + + L L GL V + + + + +P L + R Sbjct: 472 ERQAIETLNEFLAPFGLFVKLPKIKEKDSQVRPGDVQLVLEQSEGKPFAHVLHRLVLRSM 531 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR-----PQDEI 527 A+ + HFGL ++YA +TSPIR+Y D+I HR LKA+I+GE R +I Sbjct: 532 QQAKYTPVNVGHFGLAYDSYAHFTSPIRRYADLIVHRRLKALIRGEDPNRVQPVGTLADI 591 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +Q + + R + E D L A F G A I +++ + + A A Sbjct: 592 GLQTSTQERKQQRGEWDTQAMLAALFHSKDVGK--TMPARISGLTKRRIFFEIEPTMAEA 649 Query: 588 FIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + L + + + +G + Y + D +DV I I R Sbjct: 650 GLAVDDLPGAFE--LDETGHRLAARRGGSAYHLGDRLDVVIDSTDPVRGQINVRL 702 >UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6T0_9FIRM Length = 704 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 148/663 (22%), Positives = 274/663 (41%), Gaps = 38/663 (5%) Query: 5 NPLLAQLKQQLHSQT------PRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHG 57 N L+ + K + + EGV + FGF+ V+ + F+ + G Sbjct: 50 NYLIKEKKIKYINNRYSPTCSNIYEGVFEKGRGLFGFVNVEGLDEDIFVVGSESMDAFSG 109 Query: 58 DRIIAVIHSEK---ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 D++ + EK + E+ E + VG + +V D+P + I Sbjct: 110 DKVKVEVIKEKEGDRKREGRIVEITEKVKRQTVGTFYKEKTFGFVVSDNPNFTNDIYI-- 167 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 + K D V E+ P K +++ ++T+ + D++ V + +++ E Sbjct: 168 PKAGIKYAKNKDKVVVEITDFP-KDKKNWVGKITKVLGRKDENGVDIEALIYEYDVPYEF 226 Query: 175 PDGVATEMLDEG--------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIV 226 E + R+DLT ++ TID + +D+DDA+ + + L V Sbjct: 227 SHLALKEADELEFDSFDKFKGKRKDLTDVNIFTIDGPTAKDLDDAVSIVKKEN-EYVLSV 285 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD + ++ S++DK A R + Y IPMLP+ L ++LCSL E + + M Sbjct: 286 HIADVSNYVKRNSEIDKDAYERGTSIYFADRVIPMLPKTLCENLCSLNPKEEKKAFSVDM 345 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 ++ +G + D F+ + I+SKAK VYD+V++ + + D + E E + + ++ + Sbjct: 346 RINKEGKLLD-YNFYKSIIKSKAKFVYDEVNELFDGSKDLREEYYTYEEDLNTMKELYEL 404 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R+ + D + FI E G V D+ R IA RI+E+ M+ AN A Sbjct: 405 LRQRRYVEGNLDFDVDE-NFITVENGVVTDVSLRERGIAERIIEQFMLVANTSACEFFSS 463 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-D 465 GIY VH D G + + + + ++ L Sbjct: 464 MGLNGIYRVHEEPDKEKLSGFIKFANALGYKLRLHDGHYSKELEEFLKTIEGDKNEQLFK 523 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG-------E 518 + + R A +TE HF L +E Y +TSPIR+Y D++ HR+L ++ G E Sbjct: 524 TVLLRCMKKAVYTTENKGHFALAIENYTHFTSPIRRYPDLMVHRILSNILLGNIDLNNLE 583 Query: 519 TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 ++ +++ R + ER+ +++++ + + + S GM V Sbjct: 584 KEREKMEKKANHLSKMERRSEEMERESDKIFICQYMENFIDEE--YEGRVSGFSSKGMYV 641 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 +L +N I L+ D + +E+ V + + D I++ + V R Sbjct: 642 KL-NNSIEGVIYFTNLND--DYYIYDEEHYSLVGRDFGRRFTMGDKINIKVISVSKLKRE 698 Query: 638 IIA 640 + Sbjct: 699 VEF 701 >UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH0_9FIRM Length = 713 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 155/657 (23%), Positives = 266/657 (40%), Gaps = 40/657 (6%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAV---IHSEK 68 + G V + FGF+ + + F+ ++K + GD +IA +E+ Sbjct: 58 YYISDIRTVFTGKVATLSRTFGFVTNLATGEDCFVSGGKLKGAVPGDTVIAREIAAKTEQ 117 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 +AE +++ F G + + L + PD P + + KEGD Sbjct: 118 RSATAEVLAVLDVSEELFGGVIVKEGKMLKVQPDS----LGCPPLTILKVKEQIKEGDKV 173 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------ 182 + +R+ + + + + L ++N+ + + + Sbjct: 174 LFSIRKRGEHHSEHIVD-IVRVLGSSEYAKSATEAYLIQNNIPVDFSEEALNQAKQYVNA 232 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 + R DL L TID A T+D+DDA+ + +L V IAD + ++ EGS Sbjct: 233 VIDEKQTAKRLDLRDLPIFTIDGADTKDIDDAISIERTE-GGYKLGVHIADVSHYVTEGS 291 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD A R + Y+ IPMLP+ELS+ +CSL R +C M +S GT+ + Sbjct: 292 PLDNDAFERGTSVYIADKVIPMLPKELSNGICSLNPGVDRLAFSCLMEISDKGTV-KKYK 350 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQ--PESEAIAEQVRLLAQICQRRGEWRHNHALV 357 F I S+ + VY +V+ L+ T + Q + + + + + ++ ++ Q + R + Sbjct: 351 FAKTVIRSRVQGVYSEVNSILDGTANAQIKRKYKDVIDCIPVMNELAQILIKKRKDRGAP 410 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + + I E G +DI + ++ I+EE M+ AN AA+V K +Y VH Sbjct: 411 DIKSSESKVICDENGICIDIKPRIQGVSEGIIEEFMLMANNSAAKVGMKKEIPFVYRVHE 470 Query: 418 GFDPANADALAALLKTHGLH-VDAEEVLTLDGFCKLRRELDAQPTGFLDSRI-RRFQSFA 475 ++L L+ G++ + E F KL E P + +RI R + A Sbjct: 471 NPPAEKIESLKTTLEALGVNPLGINEKAEAKNFAKLLEETADDPKNIIINRIVLRTMAKA 530 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-------GETATRPQDEIT 528 + S +P HFGL ++ YA +TSPIR+Y D+ HR+L + + + Sbjct: 531 KYSEQPIGHFGLVMKEYAHFTSPIRRYADLSIHRILTDYVSRKGADKLKKKYGEFSVKAA 590 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 Q + AER D+ A ++K G + F I + G+ V L N Sbjct: 591 AQATKTELSAVAAERSCEDFYAAEYMKKHIGEE--FDGIISGVIGSGLFVELP-NTVEGK 647 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKG--ETVYKVTDVIDVTIAEVRMETRSIIARPV 643 I L E NG G T+Y + D + V + I + Sbjct: 648 IDVRSLS----ENYFEVRNGIALYDGVAGTMYTIGDKVRVKCINANVNLGQIDFELI 700 >UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiroplasma citri RepID=Q14Q19_SPICI Length = 705 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 148/667 (22%), Positives = 269/667 (40%), Gaps = 43/667 (6%) Query: 7 LLAQLKQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVIH 65 + Q + GV+ +KGFGF+ + Q+ Y++ + + D+++ ++ Sbjct: 51 VTQQHRFYYFDPKIYLRGVISINKKGFGFIKINENQEEYYVKQDDLNNALDQDQVLFILK 110 Query: 66 SEK-----ERESAEPEELVEPFLTRFVGKVQGKNDRL-AIVPDHPLLKDAIPCRAARGLN 119 +K ++ A+ ++++ VG ++ + + + L RA Sbjct: 111 KQKNDNNSKKAEAQVIKVLKRNNEYVVGVIKKNRHQQKYLEILNNKLTQY---RAEIINL 167 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 E E + K + ++ + I + V L N+ + + Sbjct: 168 DEAIENTIVKGIITSINSKNNL-MQVKIIEIIGNTNQVGVDVLAILHEFNIRTKFNEEAL 226 Query: 180 TEMLD-----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 TE R DL FVTID ++D DDA+ K + L+VAI Sbjct: 227 TEANQINQNIDVATMLANKSRRDLQTEMFVTIDGNDSKDFDDAILVKKNQNGNYLLLVAI 286 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD + S LDK A R + YL +PMLP +LS+ +CSL E R L C M + Sbjct: 287 ADVAHYAPHNSYLDKEAFERGCSVYLIDRVVPMLPEKLSNGICSLNPFEPRLTLICEMEI 346 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRG 348 G + ++ + A I SKA+L YD+V+ + S IA+ + L Q+ Q Sbjct: 347 DQQGHVVNS-SIYEAVIISKARLTYDEVNKLF--CQEKNHISAEIAQMLFLAQQLYQILV 403 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 + + +V D + +F++ + G++ DI+ R A +++E MI AN A + Sbjct: 404 WKKEHDGVVDFDLDEPKFVVDKNGKIKDIIVRERADAEKLIESFMIRANETVAETIYWMD 463 Query: 409 GFGIYNVHMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFLDS 466 +Y VH P L L GL++ + E + ++ +L + + + Sbjct: 464 LPFVYRVHDKPKPKKLFDLYTQLSYLGLNIKGKLENIHSKDLQQILNKLKDKENFKVISA 523 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-KGETATRPQD 525 + R A+ S HFGL Y +TSPIR+Y D++ HRLLK + +G+ + Sbjct: 524 LVLRSMEKAKYSDINDGHFGLASWCYTHFTSPIRRYPDLVVHRLLKEYLFQGKVKITDLE 583 Query: 526 E-------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRV 578 + + Q + ER+V A +++DK G + + I ++ G+ V Sbjct: 584 QTRAFVSHASQQSSLAELRAMECEREVDKMKEAEYMEDKIGYE--YNGIIAGVTSFGIFV 641 Query: 579 RLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVRMETR 636 L N + L +++ E + + Y + + + + + + R Sbjct: 642 ELP-NTIEGLVHITDL---KNDYYVFDEKSLKLIGERKRKEYFLGKKVRIRVKKASKKLR 697 Query: 637 SIIARPV 643 I V Sbjct: 698 QIDFELV 704 >UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Atopobium RepID=C8W8A8_ATOPD Length = 670 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 162/657 (24%), Positives = 265/657 (40%), Gaps = 36/657 (5%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKER-ESAE 74 + G + + G + Y + + + MHGD + + S K + A Sbjct: 20 KRPSTLLTGTLSLSRPGVATVSTPEGM-YALAKHGIHEAMHGDEVQVSLVSAKGKAPLAN 78 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGL--NHEFKEGDWAVAEM 132 ++ F+G A+VP ++ H EGD VA + Sbjct: 79 VRFVLTRATQTFLGIYHDAGPLGAVVPLDSRIQRDFFVLPEDPSVGRHYVFEGDVVVARI 138 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD-------- 184 +P + + + + + +D + T+A + L E P + Sbjct: 139 TEYPTRKS-AAVVTIERRVGSAEDLDMNVEATIASYGLATEFPIKALRQAEKISVDADKA 197 Query: 185 --EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 E R DL +T+D A +D DDA+ A+ L D +L V IAD ++ S +D Sbjct: 198 LAEDASRHDLREELCITVDPADAKDFDDAVGARKLEDGSFELWVHIADVAHYVKWDSPID 257 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A++R + YL +PMLP +L +D+CSLR E R ++ +M LS+ G I Sbjct: 258 LEARMRTCSAYLVDRVLPMLPEKLCNDVCSLRPAEDRLAMSVKMKLSSSGKILGATAM-N 316 Query: 303 ATIESKAKLVYDQVSDWLENTGDW------QPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 + I S+A+L YDQV +L+ + ++ AI E + +L QI R E R Sbjct: 317 SVIRSRARLSYDQVDSYLQGDVSALDSAVSREDAGAIKEMIDVLNQIRALREEIREKRGS 376 Query: 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416 V + + R +L E + + + R A ++EEAM+AAN A +L Y VH Sbjct: 377 VDFESVETRVVLDENNKPVGVSVRERTQATGLIEEAMLAANESVAHMLSQHDLESAYRVH 436 Query: 417 MGFDPANADALAALLKTHG-LHVDAEEVLTLDGFCKLRRELDAQP----TGFLDSRIRRF 471 P + L G L D + + L+ L++ + +++++ R Sbjct: 437 EQPSPESLKLAITPLVAMGALEPDVASRIAIGDQTALQEALESVHGTRYSRVVNAQLLRA 496 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR----PQDEI 527 Q A HF LG +AY +TSPIR+Y D+I HR LK ++ G+TA R +I Sbjct: 497 QKRAIYLPTNQGHFALGADAYCHFTSPIRRYPDVIVHRTLKRLLCGQTAARAELSALADI 556 Query: 528 TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587 +E+ R A R A + + + G +T I R G+ + L D A Sbjct: 557 CSTCSEQERKADAAARATQKIKLAEYYQSRLGEETW--GTIDGCERFGLFITLDDTYADG 614 Query: 588 FIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L V QE + Y++ + V I+ V + I V Sbjct: 615 LLTVRDLGHEW--YVYDQETLALIGESTGKTYRIGGRVRVKISGVNVARGQIDLALV 669 >UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0LU85_HALO1 Length = 1004 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 157/667 (23%), Positives = 262/667 (39%), Gaps = 36/667 (5%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEK 68 + + + G + G+GF+E++ + F+P + GDR++ S Sbjct: 284 RRGETRPEEDLSRTGRITVHPAGYGFVELEDGTGTVFVPARHRGAALDGDRVVLNTWSGY 343 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 + E++ + G +Q + + PD P + + K G A Sbjct: 344 KGTEGRVIEVLSRGRAKLTGTLQRTGRAVYLEPDDPRIATDYGHVPLIDGPPQSKVGQAA 403 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD---- 184 V E+ R+P L + + DD LA +L E P VA + Sbjct: 404 VVEICRYPTHERPELVGRLVRVLGKPDDPRTEIEKILAFADLPTEFPRDVARRGDETSTT 463 Query: 185 ----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 + + R DL FVTID + D DDA+ + P ++ VA+AD + ++ Sbjct: 464 VRTRDQVDRVDLRDRPFVTIDPVTARDFDDAVCIEDGPHGGPRVWVAVADVSHYVEIDDP 523 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 +D+ A +R + YLP +PMLP LS +CSL R + R+ L+ DG + + +F Sbjct: 524 IDREAAVRGVSVYLPDRVVPMLPLPLSAGICSLNPEVDRCAMVVRLDLTDDGRVLER-DF 582 Query: 301 FAATIESKAKLVYDQVSDWLENT-GDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 AA I S A+L Y V+ L + A + LA + QR R + Sbjct: 583 AAAVIRSHARLDYPGVAAALSGDFRGRRDHYRPWAPALSRLAALAQRMRTRRRARGALEL 642 Query: 360 DRPDYRFILGEKGE--VLDIVA----EPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 + IL V DIV E R A +VEE MIAAN + ++ ++ Sbjct: 643 TLAEPYVILDADEAELVRDIVRSKGAEDVRQAYELVEEFMIAANEAVGKYFAERNLPTVW 702 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLT---LDGFCKLRRELDAQPTGF-LDSRIR 469 +H +P L +L G+ + E++ G ++ ++ QP L ++ Sbjct: 703 RIHAPPEPDRLHELLPVLANFGIKLTVEDIEAATKPTGMRRIIEAIEGQPAAASLSFQVL 762 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETA------- 520 R A+ ST+P HFGL Y +TSPIR+Y D++ HR LK + G+ + Sbjct: 763 RSLKQAQYSTDPIGHFGLASPFYLHFTSPIRRYADLLVHRQLKHYLHADGKPSGGGARIP 822 Query: 521 ---TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 E Q++ R ER+ A F++ + G +F + ++ G Sbjct: 823 AADIDTLAERCAQISTHERRAVEVEREAVSMYRAYFMRGQVGE--QFTGRVSAVTNFGAF 880 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 V L I L A S + G + D + + + V + R Sbjct: 881 VELDAPFVEGLIKLDDLGADAFGFDASSMRLRGRRSGLRLGLG-DPVTIEVTNVSVARRR 939 Query: 638 IIARPVA 644 I + ++ Sbjct: 940 IDFKLIS 946 >UniRef50_Q65SI5 Exoribonuclease 2 n=36 Tax=Gammaproteobacteria RepID=RNB_MANSM Length = 659 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 312/660 (47%), Positives = 419/660 (63%), Gaps = 18/660 (2%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL+QLKQQLH P EGVVK T+K +GFLE + + +FI PP MKKVMHGD+I Sbjct: 1 MFQNNPLLSQLKQQLHDSKPHVEGVVKGTDKAYGFLETEKET-FFIAPPAMKKVMHGDKI 59 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKN-DRLAIVPDHPLLKDAIPCRAARGLN 119 A I + +++ AEPEEL+EP LTRF+ KV+ +L ++ DHP + I A+ + Sbjct: 60 KAAIETIGDKKQAEPEELIEPMLTRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQAKTVK 119 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 E KEGDW VA ++ HPL+ DR FYA++ ++I +D F PWWVTLARH + G Sbjct: 120 QELKEGDWVVATLKTHPLRDDRFFYAQIAEFICSAEDEFAPWWVTLARHEQSRYPVQGQE 179 Query: 180 TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKAL-----PDDKLQLIVAIADPTAW 234 + + R DLTAL FVTIDS +T+DMDDAL+ + + +L VAIADPTA+ Sbjct: 180 VYSMLDTETRRDLTALHFVTIDSENTQDMDDALYIEPVTAPNDEQTGWKLAVAIADPTAY 239 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 IA S+++K A+ R FTNYLPGFNIPMLPRELSD+LCSL NE R L CR+ G I Sbjct: 240 IALDSQIEKDARKRCFTNYLPGFNIPMLPRELSDELCSLMENETRAALVCRLETDMQGEI 299 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLEN-TGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 EF A ++SKAKL Y+ VSD+LE WQPE+E+ +Q+ L Q R WR Sbjct: 300 VGEPEFILAQVQSKAKLAYNNVSDYLEQVENAWQPENESTQQQINWLHQFALVRINWRKK 359 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 H L+FK++PDY F+L + G V +I AE RRIAN+IVEE+MI ANIC A L GI+ Sbjct: 360 HGLLFKEKPDYSFVLADNGHVREIKAEYRRIANQIVEESMIIANICCAHYLAKNAQTGIF 419 Query: 414 NVHMGFDPANADALAALL----------KTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF 463 N H+GFD L + E + TL G+C++R +++ + Sbjct: 420 NTHVGFDKKFLPNAHNFLMANLSNEENQQELAERYSVENLATLAGYCRMRHDIEPIEGDY 479 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 L+ R+RRF +FAE +E PHFGLGL YATWTSPIRKY DM+NHRL+KA + +P Sbjct: 480 LEFRLRRFLTFAEFKSELAPHFGLGLTGYATWTSPIRKYSDMVNHRLIKACLANRECVKP 539 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 DE ++ E R+ NRM ERD+ DWLY R+L DK ++ F AE+ D RGG+RV+L++N Sbjct: 540 SDETLARLQEARKQNRMVERDIADWLYCRYLADKVESNPEFRAEVQDCMRGGLRVQLLEN 599 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 GA F+PA +H +DE+ + + + I GE YK+ D++++ + EV+ ETRS+I V Sbjct: 600 GASVFVPASSIHPNKDEIQVNTDELALYINGERRYKIGDIVNIRLTEVKEETRSLIGNLV 659 >UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiaceae RepID=Q6MCC7_PARUW Length = 775 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 148/641 (23%), Positives = 255/641 (39%), Gaps = 33/641 (5%) Query: 16 HSQTPRAEGVVKATEKGFGFLEV----DAQKSYFIPPPQMKKVMHGDRIIAVIHSE---K 68 SQ G++K +GFGF++V + ++ FIP K + GD + +++ E Sbjct: 90 KSQADVVTGILKMHPRGFGFVQVTIPKNFEQDIFIPKHLTKNGVDGDVVEVILNQEVISD 149 Query: 69 ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWA 128 + + ++ T G ++ + + PLL H+ + GD Sbjct: 150 KGPEGKIVAILSRGRTHMAGIIRQLDKDRMFIAHVPLLGTQQRVVVHPTEEHQLQIGDRI 209 Query: 129 VAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------ 182 V E+ K + + Y+ D + + L + E Sbjct: 210 VMEVIDWGSKETETI-CRFSHYLGHISDPSCDVYAAIEEFELRSDFQTAAIEEANNLGKS 268 Query: 183 --LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK 240 + REDL L +TID + +D DDAL + L V IAD + ++ G+ Sbjct: 269 VSKKDIQNREDLRELISLTIDPDTAKDFDDALSLTRDAEGIYNLAVHIADVSHYVQPGTA 328 Query: 241 LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF 300 LD+ AK R + Y PG+ +PMLP LS++LCSLR N R ++ M + + G + D F Sbjct: 329 LDEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPNVNRLAVSVLMRIDSSGNLLD-YRF 387 Query: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 + I+S + Y + L+ ++ + L+ ++C+ + R+ + Sbjct: 388 TRSVIKSAKRFTYKEAKKVLDG-----QKNSPYKPHLELMVELCRLLKQKRYERGSIEFS 442 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ ++ EKG+ I +++VEE M+ AN A L K Y +H Sbjct: 443 LPELVILVDEKGKPYSTEYITYDITHQMVEEFMLKANEIVAWDLSQKGKNLTYRIHDEPS 502 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEIST 479 N + L G + ++ T KL + + +L S R A S Sbjct: 503 EENLRDFSTLAAAFGFKLP--DLPTPQDLQKLFEKAAETAYSNYLASSYIRRMRLAAYSA 560 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNR 539 E H+GL L Y +TSPIR+Y D++ HR+L EI +E+ R++ Sbjct: 561 ENIGHYGLSLTHYCHFTSPIRRYVDLVVHRIL---FGESDRFDDLQEIANYCSEQERISA 617 Query: 540 MAERDVGDWLYARFLKDK--AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 AE V R L+++ + + A I + G+ + D FI L Sbjct: 618 KAENSVVILKKLRLLEERHQKAPEHEYQAIITRVKNFGIYFEIFDLLLEGFIHISDLG-- 675 Query: 598 RDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRS 637 D V +E + K Y D + V + ++ ++ Sbjct: 676 EDYFVYEEEKMLLRGAKHGARYSPGDNLVVMLEKIDFISQE 716 >UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCD0_PLALI Length = 808 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 153/685 (22%), Positives = 265/685 (38%), Gaps = 65/685 (9%) Query: 14 QLHSQTPRAEGVVKATEKGFGFLEVDAQ------KSYFIPPPQMKKVMHGDRIIAVIHSE 67 ++ G +K +G + ++ + Y + + GD++ A+I + Sbjct: 61 KVPVAREHIIGTIKRAARGHAWFTPESLANQPHIEPYTVAAEDAGSALTGDKVSAIILKK 120 Query: 68 KE---RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 + + + +++E T+FVG+ + + D+ + P + Sbjct: 121 RGPNGKIAVRVIDILERATTQFVGEYHESRGKGYVTVDNSRFER--PIDVGDPGAKGVRP 178 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-- 182 GD V EM P + A L + + + V + L E P+ V E Sbjct: 179 GDQVVIEMVHFP-EFSTPGEAVLLKVLGKRGEPGVDLQSIIYEFGLPDEFPESVLEESRL 237 Query: 183 ------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 D+ R DL +TID + D DDA+ K D L V IAD ++ Sbjct: 238 QAQLFSEDDIGDRLDLRDELIITIDPLTARDFDDAISLKRHEDGSWTLGVHIADVAHFVR 297 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 G++LDK A R + YLPG +PMLP LS+ L SL+ ++VR V + + S DG + Sbjct: 298 PGTELDKEAIRRGNSVYLPGKVLPMLPEVLSNALASLQQDKVRFVKSAFIEYSPDG-MVK 356 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENT--------GDWQPESEAIAEQVRLLAQICQRRG 348 + F A I+ + + Y+QV L N + + E I + + + ++ Sbjct: 357 HTSFANAAIKVRRRFAYEQVMPLLLNRQSPGEHPAPEGETVPEEICQLLERMYELAMILR 416 Query: 349 EWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 + R + + + + G V +++I+EE M+AAN+ A + Sbjct: 417 KRRFSRGALELSLGEVELDCNDDGNVTGAHRALHDASHQIIEEFMLAANVAVAEEFDRRG 476 Query: 409 GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDSR 467 F + VH D A + T G + L E+ QP F L+ Sbjct: 477 WFFLRRVHDSPDELRMQNFAKFVATLGYDLPR--AQDRQAIQALLNEVAGQPEAFPLNYA 534 Query: 468 IRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-------- 519 + R AE S E H+ L ++ YA +TSPIR+Y D+ HRLL+ VI + Sbjct: 535 LLRSLKQAEYSPEKIGHYALAVDNYAHFTSPIRRYPDLTIHRLLEHVIADASFTHSVPAA 594 Query: 520 --------------------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 + ++ Q + R AER++ R+L DK G Sbjct: 595 ESLNTASDRKKSKSSRADLLSEADLRQLGKQCSLTERRAEKAERELIKIRLIRYLADKVG 654 Query: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ-ENGTVQIKGETVY 618 + A I + R G+ + ++ A + L D Q + + + V+ Sbjct: 655 LE--LNATITGVERFGLFCQGIELPAEGLVHLSDLPG--DYYDVDQIAHAVIGRRSGRVF 710 Query: 619 KVTDVIDVTIAEVRMETRSIIARPV 643 ++ D + V ++ V R + R V Sbjct: 711 RLGDPVRVQVSSVDPAKRELNFRIV 735 >UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1SWZ6_PSYIN Length = 656 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 266/650 (40%), Positives = 402/650 (61%), Gaps = 10/650 (1%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60 MFQ+NPLL+QLK+Q+ P+ +G VKAT++G+GFLE D K +FIPP +MKKV+HGD+I Sbjct: 1 MFQNNPLLSQLKKQIQEDIPKRQGKVKATDRGYGFLETDKGKRFFIPPSEMKKVLHGDQI 60 Query: 61 IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLN- 119 A I + ++ +AEP +L + F+ ++ K ++I+P +PLLK + ++ L Sbjct: 61 NAFIRGKGDKSTAEPNQLKKTGSAVFIARLVIKQKNISIIPKNPLLKGFFKIKGSQSLQS 120 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD-GV 178 +++GDW E+ H L+G+ ++ + I D F +T+A HNL +AP+ Sbjct: 121 RGYQDGDWVKVELVSHALEGNGFLT-QIIEKIADASDPFAYRLLTVATHNLANKAPEFDH 179 Query: 179 ATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 +++D L R DLT F TID +T+DMDDAL+ +A + +L VAI+DP+A++ E Sbjct: 180 PWKIIDPQLSRSDLTKTPFFTIDGVNTQDMDDALYIEADENG-WKLTVAISDPSAYVPEN 238 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S +D AK RAFT YLP FN+PMLPR+LSD LCSL+ E R L C + ++ G IE Sbjct: 239 SDMDAEAKRRAFTLYLPNFNVPMLPRDLSDSLCSLKEGEKRATLCCTIHINKKGEIEGEP 298 Query: 299 EFFAATIESKAKLVYDQVSDWLENTG---DWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 F+ A I+S +L Y VS++LEN D S +AEQ+R L + +R +WR ++ Sbjct: 299 AFYGAWIKSHYRLNYTDVSNYLENEELSNDCWKPSTQLAEQLRTLDSLSLKRLQWRTDNN 358 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 VFK++PDY L KGE+ +I+ EPRR ANR+VEE+MIAANICA L G++N Sbjct: 359 AVFKNQPDYTLKLNNKGEISEILCEPRRSANRLVEESMIAANICAGDFLAKHKQQGVFNT 418 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFA 475 H GF + +LL G+ D + + T+ G+ K+R++ + +LD R+R+ S+A Sbjct: 419 HSGFSSERLGKVVSLLSEFGIESDIQTLATVTGYTKIRQQTNLLHNSYLDHRLRKLLSYA 478 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERR 535 +I P HF LG++ YATWTSPIRKYGD++NHRL+K+V+ E + +EI + R Sbjct: 479 DIKNTPEAHFTLGVDHYATWTSPIRKYGDLLNHRLIKSVLLKEDNIQIDNEIGQVLNAAR 538 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 +L R+AERDV + LY+++LK++ + R+ AEI DI + G+RV++ +NGA FIP L Sbjct: 539 KLQRLAERDVNNILYSQYLKNQVESKWRYKAEIFDIIKAGIRVKIQENGATFFIPCSLLC 598 Query: 596 AVRDE---LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + + C+Q G V I +T ++ DVIDV + V++E+ +I + Sbjct: 599 KDSSDATKIDCNQALGKVIIAQQTELQLGDVIDVMLNNVKVESGQLIGKL 648 >UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVJ8_9CLOT Length = 699 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 152/666 (22%), Positives = 257/666 (38%), Gaps = 36/666 (5%) Query: 1 MFQDNPLLAQLKQQL--HSQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHG 57 + Q+ L+A K +L + + KGF F + + ++ K+ M G Sbjct: 44 LEQEGVLVATKKGRLLSVKSAGLTPAQMISQSKGFSFARPLEGGEDIYVAQEDRKRAMLG 103 Query: 58 DRIIAV-IHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 D ++ I + S E+++ F G V + L + + +P Sbjct: 104 DTVLLRDIRDSGKGLSGRVEKIIRKGNRLFTGTVVRRGRDLELE-LDGAFRYQVPVEKKG 162 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 L+ K GD A + + + + A + + V + + + K+ Sbjct: 163 SLHG--KNGDKVQA-ILSYGPRSGK-LTARILKVYGKAASAKVCADAIIDANGIPKKFKK 218 Query: 177 GVATEM---------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 E E R DL TID A +D+DDA+ + +L V Sbjct: 219 ETLREAEKLSREPITPAERKKRADLREQLIFTIDGADAKDLDDAISVEK-DGAGWKLGVH 277 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ EGS +D+ AK R + Y IPMLP LS+ CSL A E + +C MT Sbjct: 278 IADVSHYVKEGSLVDEEAKQRGTSVYFADRVIPMLPEALSNGCCSLNAGEEKLAFSCFMT 337 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN--TGDWQPESEAIAEQVRLLAQICQ 345 L G + F + I SK + VYD+V+ LE + + + + ++ ++ Q Sbjct: 338 LDRKGNLR-GYRFQKSVICSKVRGVYDEVNQVLEGCAAERLKEKYQPVLASLQAGQELAQ 396 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + + + RF L G +DI+ + ++ +++E+ MI AN AA + Sbjct: 397 LLEAKGRRRGTMDFESSEARFFLDRNGTCVDILPRSQGLSEKMIEQFMILANQAAALYAK 456 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHV-DAEEVLTLDGFCKLRRELDAQP-TGF 463 +Y VH DP + L L GL +E + L R+ + P Sbjct: 457 CLEIPFVYRVHEDPDPERLNTLQQLAAGLGLRARRIQEGVRSADLSDLLRQAEGTPAQNI 516 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG------ 517 ++ ++ R + A +P HFGL L+ Y +TSPIR+Y D HR+L V +G Sbjct: 517 INHQVLRTLAKARYDNKPLGHFGLNLDDYCHFTSPIRRYPDTAIHRILTGVAEGITVDRL 576 Query: 518 -ETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + E V + + AER A +++ G F + + G+ Sbjct: 577 QKKYQDFSREAAVLSSACELRAQRAERQAEKCYMAEYMRRHLGE--TFDGIVSGATARGI 634 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 V+LV N F+ E ++ V D + V +A + T Sbjct: 635 FVQLV-NSVEGFVGVEDFPD--CEFQFDGLLTHTDVRSGRRLTVGDPMKVQVAAADVATG 691 Query: 637 SIIARP 642 I P Sbjct: 692 RIDFTP 697 >UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepID=RNR2_LACLA Length = 665 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 152/679 (22%), Positives = 277/679 (40%), Gaps = 51/679 (7%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ----KSYFIPPPQMKKVMH 56 M Q + L + L Q ++GV KGFGF+ + +I K M Sbjct: 1 MVQLSELASALNQ------TESKGVFSKHPKGFGFVHPEDATDKTNDIYIGKNDTKFAMD 54 Query: 57 GDRIIAVIH---SEKERESAEPEELVEPFLTRFVGKVQGKNDR--------LAIVPDHPL 105 GD++ + +EK S + ++ E + VG + ++R I + Sbjct: 55 GDKVTVKVTYPKTEKRGASGQITKINERAVVDTVGTYRSLSNRQVKALGYKGRIELYNDR 114 Query: 106 LKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTL 165 + D + + +E D ++ ++P ++F ++T I + + L Sbjct: 115 ISDTLYIKQPLS---GVQEEDVVSLKITQYPT-NTKTFEGKITGIIGHKGEVGLDILEVL 170 Query: 166 ARHNLEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKAL 217 + +E E + RED TID ++D+DDA+ K L Sbjct: 171 CAMKIPQEFSSETLAEAEAFSEKLTDSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKL 230 Query: 218 PDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANE 277 + +L V IAD + ++ EGS LD+ A RA + Y+ +PMLP +LS++LCSL + Sbjct: 231 SNWHFELGVHIADVSHYVTEGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQ 290 Query: 278 VRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL----ENTGDWQPESEAI 333 R ++C M + G I + + + I++ ++ Y+ V+ + E + I Sbjct: 291 ERLTMSCLMEIDDKGKIV-SYKISPSVIKTTYRMTYNNVNKMIHQGQEGHREALENFFKI 349 Query: 334 AEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAM 393 + +++ ++ + R + ++ D + + IL EKG ++IV R A R++E M Sbjct: 350 TDSIKVAVELHEILETMRKDRGMIEFDESEAKIILDEKGHPIEIVKRDRDTAERMIESFM 409 Query: 394 IAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR 453 + AN A + K +Y VH + L G ++++ ++ F Sbjct: 410 LMANETVALDFQKKKLPSLYRVHDNPKEKSFAKLMEAAANAGFSLNSDSHQAINFFADEI 469 Query: 454 RELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 + + L ++R S A S + HFGL Y +TSPIR+Y D+I HRLL Sbjct: 470 KGTSS--EKALTYQLRHTMSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLLHL 527 Query: 514 VIKGETATRPQD------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 + + EI ++ + ER + A ++ ++ G + Sbjct: 528 YPSDHSNHTKDEWKERLPEIASHSSDMEHRAVVTERIIDAMKKAEYMSERIGE--VYTGT 585 Query: 568 IVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTV--QIKGETVYKVTDVID 625 I + + G+ V L DN I P LH E + E ++ K ETVY++ I Sbjct: 586 ITGLQKFGIFVAL-DNTVEGLIRVPNLHTGTTEELEFDEEASIFKGKKSETVYQIGQEIK 644 Query: 626 VTIAEVRMETRSIIARPVA 644 + + ++ +A Sbjct: 645 IRVIAANKRKGTVDFEQIA 663 >UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1M4_ERYRH Length = 729 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 140/646 (21%), Positives = 263/646 (40%), Gaps = 39/646 (6%) Query: 14 QLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESA 73 G + + F F E + S++I + D ++ I S ++R Sbjct: 62 YYIDNVKYGIGSFRVVRETFAFAETIS-DSFYIGKDDFNGALDMDDVLFEIKSNEKR-FG 119 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 + V+ +G ++ +L +P + + A+ N + KE D + + Sbjct: 120 VVIKSVKRNRDVILGTMKKDGKKLFFIPYDNKITFKVEYDAS---NLDLKENDRCIGRIT 176 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LDE 185 + + ++ + D+ + L + ++ + V E+ +E Sbjct: 177 SVGER----IHVDIISVLGQADEPGMDVLSVLFVYGIDNDFKQEVLDEIKNVPTEIDQNE 232 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 R D +TID +D+DDA++ +AL + +L V IAD ++ + LD++A Sbjct: 233 TKHRMDHRDQYVITIDGEDAKDLDDAIYMEAL-NGGYRLYVHIADVGHYVQPQTALDQSA 291 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 R+ + Y+ +PMLP+ELS+ +CSL N R + C++ +S G + D + + I Sbjct: 292 YERSSSVYMVDRVVPMLPKELSNGICSLHPNVDRLTMTCQIDISYAGEVID-YNIYESVI 350 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 SK ++ Y +V+ P+ + E V ++ +R R+ + D + + Sbjct: 351 CSKRRMSYKEVN--------TSPDLGEVQEMVSMMLDCARRLQYKRNQAGQIGFDSAESQ 402 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 F++ +G VLDI R A ++E M+ AN A+ R + +Y VH D Sbjct: 403 FVIDHEGNVLDIFLRERGEAEEMIESFMVIANEVVAQHCRYQSIPVLYRVHEAPDREKMQ 462 Query: 426 ALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPGP 483 L+ L+ G + E + K + + +P + + R + A+ S EP Sbjct: 463 ELSHTLRILGYRLKGNLEEIRPKEIQKALKFFEGKPEYPVVSRLMLRSMTKAKYSQEPLG 522 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG------ETATRPQDEITVQMAERRRL 537 HFGL LE Y +TSPIR+Y D++ H+ +K E + E + ++++ R Sbjct: 523 HFGLALEDYTHFTSPIRRYPDLLLHQRIKQYAVKHDFSKLEKDEQFTIEAGLHVSKKERS 582 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 AER V A+F+ +K G + + I IS G+ V L N I L+ Sbjct: 583 ILDAERQVEKIKKAQFMSNKIGEE--YVGFISGISNFGIFVELP-NTVEGLIHVRNLNDD 639 Query: 598 RDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + + + Y + + V + V + + Sbjct: 640 FYTFDGPSQKM-IGERTGRTYSIGQKLKVKLVSVDDLEHVVNFEII 684 >UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQS9_LAWIP Length = 813 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 153/677 (22%), Positives = 254/677 (37%), Gaps = 51/677 (7%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK------SYFIPPPQMKKVMHGDRIIA 62 K + S + G G F+ VD Q FI P GD++ Sbjct: 95 KGEKWAIASPMQKVIGTFVVQRSGAAFVIVDQQNTQKPYSDIFIRPELQNGAWDGDKVQV 154 Query: 63 VIHSEKERE--SAEPEELVEPFLTRFVGKVQGKNDRLAIV--PDHPLLKDAIPCRAARGL 118 +++ K + + +++E + +V K+++ +V P L ++ Sbjct: 155 IVYPTKHGKNFEGQVVQILERPRKEVIVRVSQKHEKGGVVCYPVDSKLNVLFIVDTSKLP 214 Query: 119 NHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGV 178 + + P + +D V V +N+ E P V Sbjct: 215 EKPIENELLV---IIPTPNTNGELLMGIAQYSLGVEEDVRVQEKVVKLNYNIPCEFPLHV 271 Query: 179 ATEMLDEG--------------------------LVREDLTALDFVTIDSASTEDMDDAL 212 E +R+DL +DFVTID +D DDA+ Sbjct: 272 LKEENVAKDLFIKSKAVFYNVPYQKYDDISQCSTAIRQDLRVIDFVTIDGEDAKDFDDAI 331 Query: 213 FAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCS 272 L VAIAD + ++ GS LD A R + Y P MLP LS+D CS Sbjct: 332 CVYPTDIG-WDLWVAIADVSHFVRAGSLLDSEALARGNSYYFPCSVESMLPEFLSNDFCS 390 Query: 273 LRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTG-DWQPESE 331 L+ E R V+A +++ DG N+ FF I S+A+L Y+QV LE P Sbjct: 391 LKPKEERLVMATKISFDNDGK-TKNVIFFPGVISSRARLTYEQVHLALEVKEISRLPGGI 449 Query: 332 AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE-KGEVLDIVAEPRRIANRIVE 390 + +++ + R + D P+ RF++ + V+ ++ + R +++++E Sbjct: 450 DTLSMLNNASELAKVLQANRIKRGSLEFDLPETRFLINKATRRVIGVIRQERFFSHQLIE 509 Query: 391 EAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC 450 E M+A N A L DK +Y +H D + L +L T L Sbjct: 510 ELMLAVNEAVATFLHDKQIPFLYRIHPEPDIERLEKLFRILATTDLACQLSGSPDAKKLG 569 Query: 451 KLRRELDAQPTGFLDS-RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHR 509 + E + P FL S + R A+ S EPG HFGL Y +TSPIR+Y D++ HR Sbjct: 570 GILEEAENTPQTFLISRMVLRSMMQAKYSPEPGEHFGLASPLYCHFTSPIRRYADLLVHR 629 Query: 510 LLKAVIKGETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA 565 +K + P + I Q R+ + AER++ L L+ G F Sbjct: 630 AVKFALGDTQKHIPFGQQLFSIAEQCNSHERVAQEAEREITKRLSCLVLQGDEGK--IFE 687 Query: 566 AEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVID 625 A + I+ V L+ + L E ++ + ++ + + + Sbjct: 688 AIVTGITDFAFFVELISMPIEGMVRLASLKDDWFEYNQDRQE-LLGVRTGKRFYLGQRLT 746 Query: 626 VTIAEVRMETRSIIARP 642 V ++ V + I Sbjct: 747 VKVSSVNILRLEIEFEL 763 >UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LXJ9_DESBD Length = 701 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 151/662 (22%), Positives = 255/662 (38%), Gaps = 35/662 (5%) Query: 1 MFQDNPLLAQLK-QQLHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHG 57 M + ++ K L PR G + G G+L D QK FI P G Sbjct: 54 MVESGEIVQMGKSYGLIDNLPRMTGTLDVRRSGVGYLIADDRKQKDLFIHPNNFGGAWPG 113 Query: 58 DRIIAVIHSEKER--ESAEPEELVEPFLTRFVGKV--QGKNDRLAIVPDHPLLKDAIPCR 113 D+++AV+ S +++ E+++ + +V + D P + Sbjct: 114 DKVVAVVDSSRKKDSPEGRVVEVLDRATRELLVRVSRRIHQDSYFCHPTDSRMP--FYTV 171 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 ++GD KG + + + D + +++ + Sbjct: 172 VDTSDVPNPEKGDILSVAPVEEQEKGI--WRCTALRRLGEERDLATQELLVKTGYSIPEV 229 Query: 174 APDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 P + + R DL L VTID + +D DDA++ + + +L+ Sbjct: 230 FPVPALRQAEALPDTPSPQDWAERNDLRKLALVTIDGETAKDFDDAVYVERQENG-YRLV 288 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 VAIAD ++ EGS LD A R + Y P PM P LS+ LCSLR R + Sbjct: 289 VAIADVAHYVPEGSPLDVEALARGNSYYFPLSVEPMFPEALSNGLCSLRPKVARLAMVVD 348 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 S DG + A I S+A+L Y+QV L+ T D + +R ++ + Sbjct: 349 TPYSMDGE-PGAPRLYNAVIMSQARLTYNQVQAALDGTPDQDT--AELLPMLRDAEELAK 405 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + R + + D P+ + + E ++ + A R ++R++EE MIAAN A + Sbjct: 406 IFMKRRMDRGCLDFDIPEAQVRVIED--IISVHAGTRLFSHRLIEEFMIAANERVAEYMG 463 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL- 464 + Y +H D + L +L L + + G + +L Sbjct: 464 ARQRVFPYRIHPQPDEKKLETLLRMLSHTSLVDRLPKEMNQMGLQHISHAAKGTDIEYLV 523 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524 + I R A+ S E H+GL AY +TSPIR+Y D++ HR LK +I GE Sbjct: 524 NRLILRTMMQAQYSPENDGHYGLASVAYCHFTSPIRRYADLLVHRSLKRLIAGEPEKMSM 583 Query: 525 DE---ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 + I + R AER++ L+D+ G + R + ++ G V L+ Sbjct: 584 GDVQGICEGLNALERKAMEAEREIQKRSAILALEDRIGEEMR--GVVSGVADFGFWVELL 641 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENG-TVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 D + L D V E + + + + ++V + V +E I Sbjct: 642 DMPVDGLVRLATL---DDFYVFDPERQDLLGQRTGKTFAMGQTLNVVLEAVSLERVEINF 698 Query: 641 RP 642 Sbjct: 699 TL 700 >UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFY5_9PLAN Length = 758 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 143/673 (21%), Positives = 249/673 (36%), Gaps = 46/673 (6%) Query: 8 LAQLKQQLHSQTPRAE---------GVVKATEKGFGFLEV----DA-------QKSYFIP 47 L K+ L S + G +K T G G+L D +I Sbjct: 46 LRSRKEILISDSGLIRPVKKEGWIAGTIKKTNSGAGYLIPHHKPDDIAHDQRHAGDLYIS 105 Query: 48 PPQMKKVMHGDRIIA---VIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHP 104 + GD + A + E++E T FVG + D Sbjct: 106 ERDLGDAQTGDEVYATAINRQRSGGQICGRVVEIIERASTTFVGTYFETQGEGYVHVDGK 165 Query: 105 LLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVT 164 + I + D V ++ P K + + + V Sbjct: 166 IFNSPIHV--GDPGAKGVRSEDKVVIDILHFPSKNYLG-QGVIAKVLGPHGKAGVDLLSI 222 Query: 165 LARHNLEKEAPDGVATEMLDEGL--------VREDLTALDFVTIDSASTEDMDDALFAKA 216 + + + P+ V E ++ R DLT VTID A D DDA+ Sbjct: 223 IYEFGIPLDFPEEVLAEAREQASLFDETKLGNRRDLTRETIVTIDPADARDFDDAISLTR 282 Query: 217 LPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 276 L V IAD ++ EGS LD+ AK R + YLPG IPMLP +S+ L SL+ Sbjct: 283 DEKGHWLLGVHIADVAHFVKEGSLLDREAKHRGTSVYLPGRVIPMLPEIISNGLASLQEG 342 Query: 277 EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL-ENTGDWQPESEAIAE 335 +VR + + + +G I + EF I+ K + Y+QV + E + + S + E Sbjct: 343 QVRFTKSAFIEFTPEG-IPVHTEFANTAIKVKQRFAYEQVLPIVQERDDEGKHVSAEVRE 401 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 ++ + Q+ R + + + + +K V V +++I+EE M+A Sbjct: 402 LLKNMYQLAMMLRGRRFSAGALELHLAEVKLTFDDKHRVTGAVEREHDESHQIIEEFMLA 461 Query: 396 ANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE 455 ANI A D+ + VH + A A G + +V + KL E Sbjct: 462 ANISIAEAFHDRGLRFLRRVHPSPEMPRQLAFAEFANALGFTL--NKVQSRKDLQKLINE 519 Query: 456 LDAQP-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 + P ++ + R AE + + H+ L ++ Y +TSPIR+Y D+ HR++ + Sbjct: 520 VHGTPVEQAINYALLRSLKQAEYTDKELGHYALAVDHYCHFTSPIRRYPDLTIHRMIDEI 579 Query: 515 IK-----GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIV 569 ++ + + ++ +++ R R AER++ ++ D I Sbjct: 580 LERPDKGKGQSPQGLRQLGHELSLRERRAESAERELTKVKLLTWMIDN--NIRTLETMIT 637 Query: 570 DISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA 629 + GM R D + L + V + Y+V D++ V + Sbjct: 638 GVETFGMFCRGTDVPVEGLLHISRLGKHDYFHQEVPKFSIVGERTGQEYRVGDLLTVEVE 697 Query: 630 EVRMETRSIIARP 642 ++ ++ R + R Sbjct: 698 KIDLDRRELDFRL 710 >UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=RNR_BUCAI Length = 731 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 152/675 (22%), Positives = 271/675 (40%), Gaps = 42/675 (6%) Query: 1 MFQDNPLL--AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHG 57 M +D ++ + +G V G+GFL + ++ ++ QMK +HG Sbjct: 62 MERDGQVIYTSNRCYVAPESLKIVKGKVIGHRDGYGFLRTETLKEDLWLSSEQMKSCIHG 121 Query: 58 DRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 D I+A I K R SA +L++P VG+ + ++PD I +A Sbjct: 122 DIILAHIVETHGKRRSSARFLKLLQPNNILIVGRYYIDDKIKFVIPDDTRFNFKIFIFSA 181 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + G ++++HP++ R + + + + + L H + Sbjct: 182 IKDDISI--GSIVSVKLKQHPIRNSR-VQGFIVEILGKEMGTNLAIEIALRTHLIPSLWS 238 Query: 176 DGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKA--LPDDKLQLI 225 V ++ + + R DL F TID D DDA+F K P++ L Sbjct: 239 KEVKKQVYEISRKINQYDFKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPEEGWILW 298 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 VAIAD + ++ + LDKAA R + Y P IPMLP ++S DLCSL+ N R L C Sbjct: 299 VAIADVSCYVQPNTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICE 358 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 M+LS G + + + + I S + Y+++ + + + + + L+ + Sbjct: 359 MSLSKQGELI-SYKHYEGIICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSCLQN 417 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + + ++ + + +F+L + I R A++ +E MI AN+ +AR + Sbjct: 418 IFNKDNISKKGIYFENIEPKFVLDSNLRIKSIYQNIRNDAHKFIESCMILANVASARFVE 477 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFL 464 ++ H N +L L G + + + L + + +P + Sbjct: 478 KYKYPVLFRNHDRPKKDNVVSLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDRPEYEMI 537 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET----- 519 + + R + A S + HFGL L +Y +TSPIR+Y D+I HR++K ++ + Sbjct: 538 QTVLLRSMTQAVYSPDNRGHFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKNTSKS 597 Query: 520 ----------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIV 569 +T +I + R A RDV DWL F+ K G I Sbjct: 598 NYNFYSAHLYSTGEIKKIGAHCSITERRADEANRDVIDWLKCDFMYKKIG--CILNGVIS 655 Query: 570 DISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVT 627 +++ G VRL + L D+ G + + Y + D + V Sbjct: 656 NVTTFGFFVRLNQFFIDGLVHINSL---NDDYYYFDSLGLKLIGKSTKNTYCLGDALKVK 712 Query: 628 IAEVRMETRSIIARP 642 + V + + I Sbjct: 713 VISVNLNEKKIELSL 727 >UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIL7_EGGLE Length = 701 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 156/689 (22%), Positives = 263/689 (38%), Gaps = 78/689 (11%) Query: 23 EGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS---------------- 66 GV+ GFGF++ + +F+P +M GD + Sbjct: 17 RGVLSVRGGGFGFVQTAEGE-FFVPESKMAGAFDGDLVEVAPLPVQSGRKKQPHERKADL 75 Query: 67 -EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 E+ +A +V+ VG+ + +VP+ + I R + ++G Sbjct: 76 RAGEKPAARVLRVVDRAHDTLVGRYEVAEPFGVVVPEDANIPYDIF--TMRADRPDIEDG 133 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDE 185 + P + + + + + DD V +ARH LE +G +E Sbjct: 134 SLVRVRITTFPSRNT-AATGVIEEVLGLADDEHAAVDVVIARHKLETVFSEGALSEARSA 192 Query: 186 --------GLVREDLTALDFVTIDSASTEDMDDALFAKALPD-----------------D 220 DL TID A D DDA+ + + Sbjct: 193 VLDEDGALASGYRDLRERFTFTIDPADARDFDDAVSLEPVSTCGVGTGIRVVDERGLGVA 252 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 + +L V IAD ++ S LD A+ RA + YL IPMLP ELS DLCSL+ +EVR Sbjct: 253 RWRLGVHIADVAHYVPWNSSLDLDARRRATSVYLVDRVIPMLPDELSGDLCSLKPDEVRR 312 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE----NTGDWQPESEAIA-- 334 + + L + + + A I S A+L Y++ L+ ES+ + Sbjct: 313 TMTADLYLDDRARLV-AYDLYPALIRSHARLSYEEAQALLDRCHPERSAEGAESKDLVRR 371 Query: 335 -----------EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRR 383 +++ L+++ ++R R + D + R +L E+G I + Sbjct: 372 DGACAPGDGLSDRLAALSRLAKQRFASRERAGGLDFDSVEARVVLDEEGSPTGIDLRVKT 431 Query: 384 IANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE- 442 A ++EEAMI AN A+ LRD +Y VH + AL + + D ++ Sbjct: 432 DATSLIEEAMILANETVAKHLRDAKFPSLYRVHEQPSADSLAALVPVFQDFAWFRDIDQA 491 Query: 443 ---VLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSP 498 ++ +P + + + R A + H+GL AY +TSP Sbjct: 492 DFIAGDAHVVQRVLEASAERPEGELVSTLLLRSMKRAVYRPDCAAHYGLASGAYTHFTSP 551 Query: 499 IRKYGDMINHRLLKAVIKGETATRPQDE-----ITVQMAERRRLNRMAERDVGDWLYARF 553 IR+Y D++ HR+LKA+I G Q++ I ++ R+ A R+ + + Sbjct: 552 IRRYPDLVVHRMLKALIGGRPEKFDQEKSALPWIAEHSSDMERIAEKAARESQEVKLIEY 611 Query: 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIK 613 L+ G F+A + ++ G VRL DN A IP L + L Q + Sbjct: 612 LERFVG--QTFSATVSGVATYGAYVRL-DNTAEGLIPCKNLGSEYFALDPVQ-HRLTGQD 667 Query: 614 GETVYKVTDVIDVTIAEVRMETRSIIARP 642 Y++ + V + R + RP Sbjct: 668 TGASYRLAQRLAVVLVSADPRARRLDFRP 696 >UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYR8_DESDA Length = 852 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 153/670 (22%), Positives = 237/670 (35%), Gaps = 51/670 (7%) Query: 16 HSQTPRAEGVVKATEKGFGFLEV----------------DAQKSYFIPPPQMKKVMHGDR 59 G A +G GF+ K +IP Q H D Sbjct: 81 PENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFSGGKDIYIPSAQNGGAWHQDL 140 Query: 60 IIAVIHSEKER---ESAEPEELVEPFLTRFVG-KVQGKNDRLAIVPDHPLLKDAIPCRAA 115 + + +R E+VE L V + L P L Sbjct: 141 VRVALSPGAQRGPSPEGRIVEIVERGLKEVPAHVVHRHGNSLFCRPADSRLPADFNVELP 200 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 G + G + + + A L DD V + H + ++ P Sbjct: 201 AGSEAPAQ-GTLVLLAPLK--PLASDLWSATLLGNYGREDDVAVQEELVKLNHEVPRDFP 257 Query: 176 DGVATEM-----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD-KLQLIVAIA 229 G E + R D+ L VTID A D DDA+ + P L VAIA Sbjct: 258 AGALAEAEALPGEADFKGRRDVRDLALVTIDGADARDFDDAVHVEEQPGGKGWVLRVAIA 317 Query: 230 DPTAWIAEGS-----KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 D + ++ LD A R + Y P PMLP LS+ LCSLR + R + Sbjct: 318 DVSHYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLSNGLCSLRPHVNRLAVLA 377 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDW-------QPESEAIAEQV 337 + +A G F + S A+L YDQV + + + + E + + Sbjct: 378 EIPFTAAGK-PGKPRFSEVVMRSAARLTYDQVKACILDKDEAALAELRTEERGEEVLAML 436 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAAN 397 + + R + D P+ + L + G V+ + R A+R++EE MIAAN Sbjct: 437 DKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRERNDAHRLIEEFMIAAN 496 Query: 398 ICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD 457 AR LRD +Y VH DP ++L L G+ + + + Sbjct: 497 EAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIE-NLPPKPSPAAMQGILAAAQ 555 Query: 458 AQPTGFLDSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516 P FL +R+ R A HFGL AY +TSPIR+Y D++ HR LK + Sbjct: 556 GTPQEFLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRRYADLLTHRALKMSLG 615 Query: 517 GE----TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 + A I Q+ R R ER++ L L + G F+ + ++ Sbjct: 616 LDSGPLPAGEKLLRIGDQINRRERAAMACEREMDRRLGCLALLPRVGEH--FSGIVAGVT 673 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVR 632 G+ V L I L + ++ V + +++ ++V ++EV Sbjct: 674 DFGVFVELEAMPVEGMIRVEDLGDDWYDFD-ARLMSLVGQRSGVQWRMGQKLEVALSEVH 732 Query: 633 METRSIIARP 642 + I P Sbjct: 733 LGRLEIRLMP 742 >UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ribonuclease II) n=2 Tax=Mycoplasma RepID=A5IXZ7_MYCAP Length = 729 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 146/650 (22%), Positives = 279/650 (42%), Gaps = 39/650 (6%) Query: 18 QTPRAEGVVKATEKG-FGFLEVDA------QKSYFIPPPQMKKVMHGDRIIAV----IHS 66 + +G + +G F++V+ + SYF+ ++ D + A I Sbjct: 63 KINTIQGPIHFASEGKCAFVDVEELSKNGTKSSYFVSSNNFNTALNNDIVEADVFEPISP 122 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + R A+ ++++E +G + N + P P+ K+ + + E + D Sbjct: 123 DNNRTFAKVKKIIERRCKTLIGVLDNVNGFVTFKPIEPIYKNTSF--RIKNIASEARVLD 180 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--- 183 VAE+ + +R+ + + IT +D N+ +E P V + Sbjct: 181 VVVAEIINY---ENRNKEINIIKRITDVNDPMAYVKSLEEARNVPREFPAEVNEYIQKFI 237 Query: 184 ------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAE 237 ++ +R DL VTID +ST+D DDA+ + ++ +L V IAD ++ E Sbjct: 238 PENIKNEDLSMRTDLRNDLVVTIDGSSTKDFDDAISVVKIDENTYELGVHIADVAYYVKE 297 Query: 238 GSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDN 297 + LD A R + YL +PMLP +LS+ +CSL NE R ++C ++ G + Sbjct: 298 NTPLDDEALKRGTSIYLLNEVVPMLPFKLSNGICSLNPNEERLTISCITKINKLGQSIE- 356 Query: 298 IEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 357 + + I+SK +L Y++V++++ + D+ E + + + ++ ++ Q E+++ + Sbjct: 357 TKIVPSVIKSKYRLTYERVNEFINESKDF--EDKELNKMLKNAYELSQIIREFKNKQGYI 414 Query: 358 FKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHM 417 + + L G VLDI E + +++E+ M+ AN A+ + + +Y +H Sbjct: 415 DFEIQEPHIELDSDGRVLDISVEKTGESEKMIEDFMVRANEEVAKFITNSKLPMMYRIHE 474 Query: 418 GFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFA 475 + +LK+ ++V + +T F K+ ++++Q FL R A Sbjct: 475 VPSEEKIEYFLEVLKSLKINVSLNRKHITPLTFQKIINQINSQRNDEFLKMLFLRTMQKA 534 Query: 476 EISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR------PQDEITV 529 S + HFGL E Y +TSPIR+Y D+I HR+L + + + +I Sbjct: 535 VYSPDNIGHFGLASECYCHFTSPIRRYPDVIVHRVLWDFVFKKQLNKVDEFAANLQKIAA 594 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + ERDV D +A + K K ++ F ++ I++ GM ++ DN A + Sbjct: 595 MNSASEENAVQLERDVNDLKFAEYFKSKINSE--FEGQVFGITKFGMFIQF-DNKTDAMV 651 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 + E + + YK+ + V I T I Sbjct: 652 HISNIGDGDFEANEQMTKLYSKNDPKKAYKLGQTVRVVITNADETTGKID 701 >UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_CHLTR Length = 694 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 155/644 (24%), Positives = 257/644 (39%), Gaps = 34/644 (5%) Query: 21 RAEGVVKAT-EKGFGFLEVDAQK----SYFIPPPQMKKVMHGDRIIAVI---HSEKERES 72 G + KGFGF+ D + FI +K + GD ++ + E+ Sbjct: 18 LVPGTLFVHSRKGFGFVSPDQPELYPFDIFISASDLKGALDGDHVLVALPFSLRGGEKRK 77 Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 +++ T VG + + + + P +A +K GD + + Sbjct: 78 GVIHKVLSRGKTVLVGTIVSLINPTLAMVYVNTIGPEHPLKAELLPKRTYKLGDRLLLKT 137 Query: 133 RRHPL--KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-------- 182 + ++I + + V A ++ +E PD V E Sbjct: 138 PVWKENYPSREPPPLAMLEFIGNISNAKTDFPVIKAEFSITEEFPDAVVQEASQFLQKHV 197 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 R+DL L TIDS+S +D DDA+ + L V IAD + ++ S LD Sbjct: 198 TQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALD 257 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A R + Y PG IPMLP LSD+LCSL+ N R ++ MT S +G + D Sbjct: 258 REAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSD-YRILR 316 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I SK ++ YD+V + +E + ++ I++ + +A++ + + R P Sbjct: 317 SVIRSKYRMTYDEVDEIIE-----KKQTHPISKTILKMAELSRIFSDIREQRGCTRLVLP 371 Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 + L E + ++ + A++++EE M+ AN A + + + H + Sbjct: 372 SFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPFRTHEPPNEE 431 Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEP 481 + K G + D L+ P L S+ R A STE Sbjct: 432 SLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSMKTASYSTEN 491 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMA 541 H+GL L+ Y +TSPIR+Y D+I HRLL + E ++I + + R+ A Sbjct: 492 KGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE--EHLEQIVRACSSQERIAAKA 549 Query: 542 ERDVGDWLYARFLKDKAGTDTR--FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 E + ARFLK + A I+ S G+ L + FIPA L Sbjct: 550 EGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEFCHEGFIPAAKLPQA-- 607 Query: 600 ELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 V + G ++ + VI V +A V + T+SI V Sbjct: 608 -YVLQTKIGLEELPEH--LRPGAVISVQLASVTLLTQSIEWTLV 648 >UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured marine microorganism HF4000_APKG3D20 RepID=B3T7C1_9ZZZZ Length = 671 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 144/670 (21%), Positives = 252/670 (37%), Gaps = 56/670 (8%) Query: 23 EGVVKATEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHSEKERESA-------- 73 GV+ G F+E+ QKS+ + +HGD + S ++R+ Sbjct: 7 RGVLVFRRNGNAFVEIRNRQKSFQLAKAATACALHGDEVEIRQVSPRKRKPGQRKATGRR 66 Query: 74 --EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 E ++V L F+G Q + I P+ L + +G+ + + Sbjct: 67 SYEVVKVVSRSLDHFLGFAQRQGKGWMIRPEDRRLHTNFALSGE--MPPNLVDGEKVLVQ 124 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------L 183 + + + D LA++ L V +E+ Sbjct: 125 FVDWGQPQSL-PRGRILRVLGPAGDPMTDHIGILAKYKLPNRFSRKVESELNTIPRQVRQ 183 Query: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 + R+DL +T+D D DDAL L +++ V IAD +A++A S +DK Sbjct: 184 QDLKGRKDLRDRFTLTVDPIDARDFDDALSLHPLKGGNVEVGVHIADVSAYVAPESAIDK 243 Query: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303 A+ R + YL G +PMLP++LS+ +CSL E R V + T G + + A Sbjct: 244 EARRRGNSTYLVGEVVPMLPKQLSNGICSLVEAEDRLVKSVLFTFDPKGNVLGHH-VTEA 302 Query: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQ------------------------VRL 339 I S +L Y+Q ++ + + S E +R Sbjct: 303 VIRSDKRLTYEQAKLLMDESDLSKVRSAKPPESRYSGKPGTTLSKLPDGKLLKLQSTLRN 362 Query: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANIC 399 L E R H + + + ++ ++G ++ +++++EE M+ AN Sbjct: 363 LWSFADELREQRLRHGALDLGGKEVKILVDDRGNPERMMRLVNDESHQLIEEFMLLANET 422 Query: 400 AARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ 459 A+ LR I+ VH DP D L + G+ ++ L ++ Sbjct: 423 VAKELRRLRRPAIHRVHDDPDPEKLDELRSFAAIFGISC--GDLNHRKAMTALTSKIKNH 480 Query: 460 P-TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 P + L ++ R A P H+GL Y +TSPIR+Y D++ HR+++A ++G Sbjct: 481 PISQVLRIKLLRSLRKACYRVSPDGHYGLAKSDYLHFTSPIRRYADLVVHRIIEAQLRGS 540 Query: 519 T----ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT--RFAAEIVDIS 572 + ++I ++E R + AER+ + + + A I I Sbjct: 541 RTTAHSRGDLEKIAFHVSETERNSVDAERESVKTKLVAYYARELKENNVRPHEAIITQIG 600 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVR 632 R G V L D A F+ L V + E + K+ I V I V Sbjct: 601 RRGFFVELTDTLAQGFVALRALPRHEGYRVSANETAITARNPKKTLKIGQRIKVMIDRVD 660 Query: 633 METRSIIARP 642 + + + R Sbjct: 661 QDEKLLDFRL 670 >UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group RepID=A9UUC9_MONBE Length = 951 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 135/702 (19%), Positives = 241/702 (34%), Gaps = 82/702 (11%) Query: 13 QQLHSQTPRAEGVVKATEKGF--GFLEVDAQKS--YFIPPPQMKKVMHGDRIIAVIHS-- 66 Q +G ++ + + F++ F+P M + + GD + I Sbjct: 225 QGGLKAGKLVQGTLRISRENTQEAFVKPRDDPEHPVFVPGNLMNRAVDGDLVALQILPES 284 Query: 67 ---------------------------------EKERESAEPEELVEPFLTRFVGKVQGK 93 E+ + + + +V + G + Sbjct: 285 QWQTPSGIIERPEGTHLVMDGTQDAEGELEDMQERTQRTGQVVGIVRRRWRPYCGILAAN 344 Query: 94 NDRLAIVPDHPLLKDA---IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQY 150 ++ P+ L +P R + G V + P + L + Sbjct: 345 SNT--ASPNLFLFTAKEATLPPIRFRSQQPDKLVGQQIVLAVDGWPT-NSKYPIGHLVRV 401 Query: 151 ITFGDDHFVPWWVTLARHNLEKEA---------PDGVATEMLDEGLVREDLTALDFVTID 201 + D V L H + E PD + REDL L+ +ID Sbjct: 402 LGPIGDVNTETEVVLLEHAVPFEPFSKAVLDCLPDATWLAAEQDLSRREDLRHLEVCSID 461 Query: 202 SASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPM 261 D+DDAL + LP+ ++ V IAD + +I + LD+ A R T YL I M Sbjct: 462 PPGCTDIDDALHLRDLPNGHFEVGVHIADVSHFIKPNTALDQEAAKRGTTVYLSNRRIDM 521 Query: 262 LPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE 321 +P LS +LCSLR E R +C ++ I + F + I S+A L Y + ++ Sbjct: 522 VPGLLSSNLCSLRGGEERFAFSCIWEMTDQADII-STRFCKSIIRSRAALEYSEAQARID 580 Query: 322 NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIVAE 380 + D + + +R L + + R + P+ RF + + + +D+ + Sbjct: 581 DETDQTT----LTDSIRRLNALAKIVKRRRIEAGALMLASPEVRFRIDTETHDPVDVQMK 636 Query: 381 PRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVD 439 N +VEE M+ AN+ +AR + + + H P+N + L + G+ + Sbjct: 637 QLHDTNSLVEEFMLLANVSSAREIHKQFPTCAVLRRHPAPPPSNFEPLLKAAEAAGVTLS 696 Query: 440 AEEVLTLD-GFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAY 492 L + E L R A+ H+GL Y Sbjct: 697 TTSSKELAVSLDMAQPEGQPYMNTLLRILATRCMLPAQYFCSGTVPQTEFGHYGLASPIY 756 Query: 493 ATWTSPIRKYGDMINHRLLKAVIKGETATRPQ------DEITVQMAERRRLNRMAERDVG 546 +TSPIR+Y D++ HRLL A I + I + R R + A R Sbjct: 757 THFTSPIRRYADLLVHRLLAACIGADPTYPDLLNKDKIASICDNLNFRNRQAQYAARSSL 816 Query: 547 DWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE 606 + F K + + A I+ + + + V + G + EL + Sbjct: 817 ELHTCLFFKKRTTHE---EAYIIRVRKNAIAVLVPAYGLEGRVYFDAADGQAPELSYDEN 873 Query: 607 NGTVQIKGETV---YKVTDVID--VTIAEVRMETRSIIARPV 643 + + + +V D + V + + ++ R V Sbjct: 874 KMALTVTKDDQHINLRVFDKVKVQVQVDSSDPQREQMLVRLV 915 >UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q297C3_DROPS Length = 978 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 140/713 (19%), Positives = 258/713 (36%), Gaps = 101/713 (14%) Query: 19 TPRAEGVVKATEKGF--GFLEVDA-QKSYFIPPPQ-MKKVMHGDRIIAVIHSEKER---- 70 +G +A+ + + G + V+ +K I + + + + GD + + E E Sbjct: 248 KKLLQGAFQASRENYLEGSVNVETYEKGILIQGRECLNRAVDGDLVAVELLPESEWSAPS 307 Query: 71 ------------------------------------------ESAEPEELVEPFLTRFVG 88 + +V ++ G Sbjct: 308 EIVLEEKNVYADDVPSEERAEEEKDMLKQVQQAAAAASAERTPTGRIVGIVRRKWRQYCG 367 Query: 89 KVQG----KNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFY 144 +Q +R VP + I + + + + P + R Sbjct: 368 ILQPSLIENTNRHIFVPADRKIPR-IRIETRQAAKLQ---NQRIIVTIDTWP-RNSRYPQ 422 Query: 145 AELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEML--------DEGLVREDLTAL 195 + + D V L H++ + + V + + ++ R DL L Sbjct: 423 GHFVRSLGPLGDMATENEVILLEHDVPHCKFSEKVLSFLPKLPWSITAEDYAKRVDLREL 482 Query: 196 DFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLP 255 D ++D D+DDAL + LP+ ++ V IAD + +I G+ LDK A R T YL Sbjct: 483 DICSVDPPGCTDIDDALHCRELPNGNFEVGVHIADVSHFIRPGNALDKEAAARGTTVYLV 542 Query: 256 GFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQ 315 G I M+P LS +LCSL R +C + + + D F + I+SK + Y++ Sbjct: 543 GKRIDMVPELLSSNLCSLVGGVERFAFSCVWEVDKEANVIDK-RFHKSVIKSKRAMTYEE 601 Query: 316 VSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEV 374 +++ IA+ +R L ++ + + R ++ + P+ RF + + E Sbjct: 602 AQVLIDDATQQS----EIAKSLRHLNRLAKILKKRRMDNGALVLASPEIRFQVDSETHEP 657 Query: 375 LDIVAEPRRIANRIVEEAMIAANICAARVL-RDKLGFGIYNVHMGFDPANADALAALLKT 433 L++ A+ R N +VEE M+ ANI A + + + H P N D L + Sbjct: 658 LEVEAKQMRETNSMVEEFMLLANITVAEHIAAEFTECAVLRRHPKPPPTNFDPLVKAARY 717 Query: 434 HGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFG 486 G VD E L L K +E + + R A E H+G Sbjct: 718 QGFQVDTETGLVLSHSLDKCVKEDNPYFNTMIRILTTRCMMQAVYFISGSLQKEEFFHYG 777 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT------RPQDEITVQMAERRRLNRM 540 L Y +TSPIR+Y D++ HRLL A I ++ + +E+ + R ++ + Sbjct: 778 LAAPIYTHFTSPIRRYSDIMVHRLLAASIGADSTYAQLLERKSNEELCHNLNYRHKMAQY 837 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD- 599 A R F + G + ++ + + ++V + G + +D Sbjct: 838 AARASVGLNTHLFFR---GKEEDEEGYVLFVRKNALQVLIPKYGLEGTLYLKTDKDGKDG 894 Query: 600 -------ELVCSQENGTVQIKGETVYKVTDVIDVTIA--EVRMETRSIIARPV 643 + E Q G V+ D + V ++ ++ ++ R V Sbjct: 895 VERTKSEVIFTFNEEDHTQRCGNVVFHSFDPVSVRLSLDSSNVQHEKLVFRLV 947 >UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4W7_SLAHD Length = 670 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 162/665 (24%), Positives = 267/665 (40%), Gaps = 56/665 (8%) Query: 23 EGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEK----------ERES 72 GV+ T G+ F++ + +FIP ++ GD + S +R + Sbjct: 7 RGVLNMTSAGYAFVQTAEGE-FFIPASKVHDAFDGDVVEVSRLSSSERGSYAQAGPDRPA 65 Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 A +V VG+ + +VP+ P +K I R + GD M Sbjct: 66 ARVVRVVLRAHESIVGRYEVAEPFGIVVPEDPRIKHDIF--TLRADAPHVQHGDIVRVRM 123 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT----------EM 182 +P + + + + D + + +ARH LE + V E Sbjct: 124 TVYPNR-REPAQGVVEEVLGHVGDAGMDVELIVARHKLETKFSPKVLEDVAHAAVGEAEA 182 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 L G R D+ TID A +D DDAL + L+L V IAD + ++ S D Sbjct: 183 LSSGDYR-DIRNRVVFTIDPADAKDFDDALSFDKV-GGYLRLGVHIADVSHYVPWNSPTD 240 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 A+ R+ + YL +PMLP LS+D+CSLR E R + + L+ ++ +++ + Sbjct: 241 LEARRRSTSVYLVDRVVPMLPEVLSNDVCSLRPREPRRAMTVDLYLTETFSV-HHVDAYP 299 Query: 303 ATIESKAKLVYDQVSDWLENTG------------DWQPESEAIAEQVRLLAQICQRRGEW 350 + IES A+L YD V + + D + E++ ++ L ++ E Sbjct: 300 SIIESCARLDYDTVQECFDRVAGGERPAAVSMLQDVCKDPESVLVRLLGLKRVSVGLHER 359 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R + D + + L ++G + + A +VEEAMIAAN AR+LRD Sbjct: 360 RLKRGGLDFDGVEAKVRLDDEGRPVGVDIRKTTQATSLVEEAMIAANEAVARLLRDGAIP 419 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAE----EVLTLDGFCKLRRELDAQ-PTGFLD 465 IY VH + AL +L+ G D K+ + + + Sbjct: 420 SIYRVHEPPATGDLSALIPILQEFGYDSDVSMSRFAAGDPFAIQKVIAKAKGRLEEPLVS 479 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD 525 + + R + A PHFGLG EAY +TSPIR+Y D++ HR+LK + G T T + Sbjct: 480 TLVVRAMTQARYVDACEPHFGLGSEAYTHFTSPIRRYPDLVVHRMLKVKLFGRTETTSAE 539 Query: 526 E-----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 E I +E R A R+ + L++ G + F + ++ G VRL Sbjct: 540 EAALATIAAHASEMERKAETAARESQELKLFELLEEHIGEE--FDGLVSGVTASGFFVRL 597 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQEN-GTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 D F+ L ++ + E VY++ + + + +V R Sbjct: 598 DDTS-EGFV---SLRRAQEYFILDPERYTLTGSDSGVVYRLGARVRIRVRDVYPFERKAD 653 Query: 640 ARPVA 644 VA Sbjct: 654 FDLVA 658 >UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Verrucomicrobia RepID=B5JNV1_9BACT Length = 861 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 145/702 (20%), Positives = 253/702 (36%), Gaps = 78/702 (11%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEVDAQ------KSYFIPPPQMKKVMHGDRIIAV----- 63 + G +K +KG L DA+ K+ I MH D+++ Sbjct: 61 IPKDVDLVTGTIKFRQKGSAILIPDAKAGEPKPKAIEIAAEDTSVAMHDDKVVVRLADAP 120 Query: 64 ----IHSEKER---------ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI 110 + + + + VG + + PD P + I Sbjct: 121 PNEPVWKRGRKQASAYQPTGPFGRVIRIQKRARETMVGTLCKTRFFHYVAPDDPRIIHDI 180 Query: 111 PCRAARGLNHEFKE--GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARH 168 + G V ++ + + EL + + L ++ Sbjct: 181 YVPPPEESRLDPLPTVGSKVVVKLHEWEQRHV-NPEGELIANLGKTHEPQAELMGVLHKY 239 Query: 169 NLEKEAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220 NL+ E P V E + + R DL TID +D DDA+ + D Sbjct: 240 NLDPEFPPEVMKEAESVPSKVTEKQLIGRRDLRKAFTFTIDPDDAKDFDDAISLEYPDDK 299 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 +++ + IAD A++ G+KLD A R + YL G IPMLPR LS+ +CSL +E R Sbjct: 300 HVRVGIHIADVAAYVRGGTKLDTEAFNRGNSTYLVGIVIPMLPRSLSNGICSLVEDEDRL 359 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDW-------------- 326 + +T + G I + +++ I S +L Y Q L+ Sbjct: 360 TKSVFVTFNKKGDIVE-VDYANTVIRSNKRLTYKQAYTLLKENDLQAARDLKLPPAHQTG 418 Query: 327 ----------QPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLD 376 E + + +R L I + R H + D + + + EKG Sbjct: 419 STGRALNTLSDAELGKLQKGIRELWSIASKLRAARFKHGSLNLDMEETKIFVDEKGYADR 478 Query: 377 IVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGL 436 + +++++EE M+ AN C A+ ++ IY VH D + L + T G+ Sbjct: 479 LEKIVNDESHQLIEEYMLLANECVAKEMKRNRLPCIYRVHEDPDEERLNDLREYMATWGI 538 Query: 437 HVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATW 495 ++ KL L A P L +++ R A + P H+GL Y + Sbjct: 539 E--TSDLNNRKDLNKLLETLSAHPQSRLLRTQVLRSLKKACYKSTPDGHYGLCKNDYLHF 596 Query: 496 TSPIRKYGDMINHRLLKAVI---KGETATR---------PQDEITVQMAERRRLNRMAER 543 TSPIR+Y D++ HR+ + +GE A + +++ + AER Sbjct: 597 TSPIRRYSDLVTHRVFNHFLVKVRGEPALNESTLRYNASKASSVADHLSQTEVNSVEAER 656 Query: 544 DVGDWLYARFLKDKAGTDTR--FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 + F + + + F A I ++ GM + L ++ A + L L Sbjct: 657 ESIKVKLLEFFERELDKKKKTAFDAIITEVRNHGMFIELKESNAFGMVHISALRDDLYRL 716 Query: 602 VCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 S + + + Y + +I V + +V R + R Sbjct: 717 NASG-TALIGRRKKNAYSLGQMIQVEVHKVDRFKRQVDFRLC 757 >UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metazoa RepID=RRP44_HUMAN Length = 958 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 132/716 (18%), Positives = 259/716 (36%), Gaps = 87/716 (12%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGF--GFL----EVDAQKSYFIPP-PQMKK 53 +F ++ L++L+Q + S +G +A+ + + + + + K + + + Sbjct: 227 IFSEHLPLSKLQQGIKS-GTYLQGTFRASRENYLEATVWIHGDNEENKEIILQGLKHLNR 285 Query: 54 VMHGDRIIAVIHSEKE--------------------------------------RESAEP 75 +H D + + + + + + Sbjct: 286 AVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEETERMLKTAVSEKMLKPTGRV 345 Query: 76 EELVEPFLTRFVGKVQGKN----DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 +++ + G + + R P + EG + Sbjct: 346 VGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPRI----RIETRQASTLEGRRIIVA 401 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA---------PDGVATEM 182 + P + R + + + V L H++ + P + Sbjct: 402 IDGWP-RNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSIT 460 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 + REDL L ++D D+DDAL + L + L++ V IAD + +I G+ LD Sbjct: 461 EKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALD 520 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + + R T YL I M+P LS +LCSL+ + R +C ++ + I +F Sbjct: 521 QESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEIL-KTKFTK 579 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I SKA L Y + +++ ++ I +R L ++ + + R + P Sbjct: 580 SVINSKASLTYAEAQLRIDSAN----MNDDITTSLRGLNKLAKILKKRRIEKGALTLSSP 635 Query: 363 DYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFD 420 + RF + + + +D+ + R N +VEE M+ ANI A+ + ++ + H Sbjct: 636 EVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPP 695 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD-AQPTGFLDSRIRRFQSFAEIS- 478 P+N + L ++ L + + +L L R A Sbjct: 696 PSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTLLRILATRCMMQAVYFC 755 Query: 479 ---TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE------TATRPQDEITV 529 H+GL Y +TSPIR+Y D+I HRLL I + T +I Sbjct: 756 SGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTYPELTDKHKLADICK 815 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R ++ + A+R + F K K A I+ + + + V + G + Sbjct: 816 NLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSE--EAYILFVRKNAIVVLIPKYGLEGTV 873 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA--EVRMETRSIIARPV 643 +L+ E +++I +TV+ V D + V I ++ + I V Sbjct: 874 FFEEKDKPNPQLIYDDEIPSLKI-EDTVFHVFDKVKVKIMLDSSNLQHQKIRMSLV 928 >UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n=3 Tax=Marinobacter RepID=A1U792_MARAV Length = 660 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 203/657 (30%), Positives = 301/657 (45%), Gaps = 26/657 (3%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M + L L QLK + G VK+T FGF+ +D + F+PP +M+KV+ GD Sbjct: 1 MLNADALNQLRQLKTDIKQNKVVFPGTVKSTNGRFGFVALDEGRDVFLPPEEMQKVLPGD 60 Query: 59 RIIAVIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 R+ H EK + +EL+E LT FVG+ K + P+ P + I Sbjct: 61 RVNVTEHEVEKGKTQGVVDELLESHLTTFVGRYLIKGKGHFVAPETPGINRWIFIPPKE- 119 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 + D+ ++ RHP+K + A++ + I + + TLA +L P+ Sbjct: 120 -RKGAQPDDFIYCQIHRHPIKDGKG-QAKVLRVIGKAGEPGIERAFTLANFDLADAWPEE 177 Query: 178 VATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 V T+ RED T +VTIDS T+DMDDAL A L +AIA Sbjct: 178 VQTQADALTEESITSHREGREDRTEQPYVTIDSPGTQDMDDALMATPNATG-WTLSIAIA 236 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 DPTA I GS ++ A RA Y PG +PMLP +S LCSL R L C + ++ Sbjct: 237 DPTAMIEPGSPAEEEAFNRATAIYFPGEPLPMLPDAISTRLCSLMPEVPRLALVCDLQVN 296 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE--SEAIAEQVRLLAQICQRR 347 DG++ D F A I S+ KL Y+ VS +E D + + EA+A + L Q Sbjct: 297 NDGSLGD-YSFHQAVIRSQGKLSYELVSHLIEGREDDEIKALPEAVANSLDQLHQAATAL 355 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 +WR HAL+ DRP++R L E + I + A+R+VEE M+AAN CAA L +K Sbjct: 356 RKWRSEHALLSNDRPEFRLRLDENKRIRVIEPAVQNEAHRLVEECMVAANRCAADFL-EK 414 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LDS 466 G G++ H G AD + LL+ + H+ + + +GF L + D + S Sbjct: 415 QGQGLFIQHPGLRDDRADNIRKLLEGYAPHLAELDATSAEGFKALMKHTDGLQADVPVKS 474 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE 526 + R + AE+ EP PH G+GL AY T+TSP+RK+ D HRL+KA + + + Sbjct: 475 ILSRQLARAELGFEPAPHQGMGLAAYTTFTSPLRKFSDFYVHRLIKAALWDQPIKALNPQ 534 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + + RMA + WL + + K I G VRL NG Sbjct: 535 QLESLQTTQFRARMAANTLEAWLKSDYAKGLPADP--MEGTITRTMPSGFFVRLDCNGLE 592 Query: 587 AFIPAPFLHAVRDELVCSQ-ENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 F+ L + V K ++++ + V+ + V E R I + Sbjct: 593 GFVSCKDLEG---KFSFDPVTLRLVHNKNGRIFQLDQRVTVSFSGVDEERRQINFKL 646 >UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_HUMAN Length = 796 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 132/716 (18%), Positives = 259/716 (36%), Gaps = 87/716 (12%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGF--GFL----EVDAQKSYFIPP-PQMKK 53 +F ++ L++L+Q + S +G +A+ + + + + + K + + + Sbjct: 65 IFSEHLPLSKLQQGIKS-GTYLQGTFRASRENYLEATVWIHGDSEENKEIILQGLKHLNR 123 Query: 54 VMHGDRIIAVIHSEKE--------------------------------------RESAEP 75 +H D + + + + + + Sbjct: 124 AVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEETERMLKTAVSEKMLKPTGRV 183 Query: 76 EELVEPFLTRFVGKVQGKN----DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAE 131 +++ + G + + R P + EG + Sbjct: 184 VVIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPRI----RIETRQASTLEGRRIIVA 239 Query: 132 MRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA---------PDGVATEM 182 + P + R + + + V L H++ + P + Sbjct: 240 IDGWP-RNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSIT 298 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 + REDL L ++D D+DDAL + L + L++ V IAD + +I G+ LD Sbjct: 299 EKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALD 358 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + + R T YL I M+P LS +LCSL+ + R +C ++ + I +F Sbjct: 359 QESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEIL-KTKFTK 417 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I SKA L Y + +++ ++ I +R L ++ + + R + P Sbjct: 418 SVINSKASLTYAEAQLRIDSAN----MNDDITTSLRGLNKLAKILKKRRIEKGALTLSSP 473 Query: 363 DYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFD 420 + RF + + + +D+ + R N +VEE M+ ANI A+ + ++ + H Sbjct: 474 EVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPP 533 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD-AQPTGFLDSRIRRFQSFAEIS- 478 P+N + L ++ L + + +L L R A Sbjct: 534 PSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTLLRILATRCMMQAVYFC 593 Query: 479 ---TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE------TATRPQDEITV 529 H+GL Y +TSPIR+Y D+I HRLL I + T +I Sbjct: 594 SGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTYPELTDKHKLADICK 653 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R ++ + A+R + F K K A I+ + + + V + G + Sbjct: 654 NLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSE--EAYILFVRKNAIVVLIPKYGLEGTV 711 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA--EVRMETRSIIARPV 643 +L+ E +++I +TV+ V D + V I ++ + I V Sbjct: 712 FFEEKDKPNPQLIYDDEIPSLKI-EDTVFHVFDKVKVKIMLDSSNLQHQKIRMSLV 766 >UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECD1_9CLOT Length = 716 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 144/664 (21%), Positives = 268/664 (40%), Gaps = 36/664 (5%) Query: 1 MFQDNPLLAQL-KQQLHSQTPRAEGVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGD 58 M + + + + + F F + FIP + + GD Sbjct: 47 MVAEGKIAYTKNRFFHLKSIGVYAAEIVRNSRTFCFAQRASDEARIFIPGKYSRGAILGD 106 Query: 59 RIIAVIHSE-KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 ++ ++ + E + + + + F G + +++ + PD+ L KD IP R Sbjct: 107 LVLVRPQAQLGDSEEGQVFSIYKNGPSAFSGVLMQEDEDYFVQPDN-LSKDRIPVR--SK 163 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 + K GD +A++ + ELT + L H + +E P Sbjct: 164 SIGDAKPGDKVLAKVVLRGSRHSEHI-CELTGAYGSAETAAACARAVLDAHGITEEFPQE 222 Query: 178 VATEMLD---------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 V + E + R DLT L TIDSA ++D+DDA+ + D + V I Sbjct: 223 VLEQARSISEQGIRDSERVHRLDLTDLPIFTIDSADSKDLDDAISIEKAED-CYHVGVHI 281 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD + ++ + LD+ A R + Y IPMLP+ELS+ +CSL E R + M + Sbjct: 282 ADVSHYVGYRTPLDQEAFRRGTSIYYANRVIPMLPKELSNGICSLNPQEDRLAFSALMNV 341 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN--TGDWQPESEAIAEQVRLLAQICQR 346 S DG + D F I S+ K VY +V+ LE D + + + ++L+ ++ QR Sbjct: 342 SLDGELMD-FTFRKTVIRSRVKGVYKEVNALLEGGADEDLKQKYSEVLPSLQLMHELYQR 400 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + + + + + I+ E +DI + ++ ++EE M+ AN AA + + Sbjct: 401 LFQNKVKRGAPQLETSESKIIVDENDVAVDIQPRVQGLSEGMIEEFMLLANEAAATLAKR 460 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLH-VDAEEVLTLDGFCKLRREL-DAQPTGFL 464 + +Y +H P +L +L+ GL + ++ + + D+ + Sbjct: 461 EKLPFVYRIHEHPSPEKLSSLKEILERLGLPSLRVDKKVKPGVLAGILTSSRDSGLFPII 520 Query: 465 DSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK-------- 516 ++++ R + A+ P H+GL LE YA +TSPIR+Y D+ HR+L + Sbjct: 521 NTQVLRSMAKAQYDERPVGHYGLALENYAHFTSPIRRYPDLTIHRILTEYVVLHETPDKI 580 Query: 517 GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 + + + + Q E ER+ D A +++ G + F I + G+ Sbjct: 581 HKRYDKFVAQASKQSTETEITAMQIERECNDRYKAEYIRQHIGEE--FDGIITSVLGRGL 638 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 + L +N ++ L+ + + Y+V D + + V + Sbjct: 639 YIEL-ENTVEGYVKVEDLNGI---YEHDGFTELKNHQTGKRYRVGDKVRIQCVAVDVNAG 694 Query: 637 SIIA 640 I Sbjct: 695 RIDF 698 >UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6A7_MYCS5 Length = 735 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 149/665 (22%), Positives = 266/665 (40%), Gaps = 50/665 (7%) Query: 13 QQLHSQTPRAEGVVKA-TEKGFGFLEVDAQ----KSYFIPPPQMKKVMHGDRIIAVIHSE 67 + + G++K ++K F FLE + + +S F+ + ++ D +IA I+ + Sbjct: 58 YYVPELLRKQSGIIKVASKKQFAFLEFENEAQEKESVFVKFQDLNSALNNDEVIASIYKD 117 Query: 68 KERES------AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHE 121 ++ A +E+V+ + +G ++ + + P L+ + Sbjct: 118 HNEKNPTRQLLAVVDEIVQRNNQKIIGFIKKDKNTIFFAPADGCFDKVKF--ELLNLSSK 175 Query: 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE 181 K D + E++++ E+ + IT D V L N++ E E Sbjct: 176 VKINDCVLCEIKKY---DKNLVSLEIKKVITNTSDPNVFVKAYLESTNIDLEFSAETLAE 232 Query: 182 ML----------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 E R++LT+ VTID ST+D DDA+ K L + L V IAD Sbjct: 233 SKLIPQEVDLNIKEKFQRKNLTSELIVTIDGESTKDFDDAINVKKLENGNFLLSVHIADV 292 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 ++ E + LD A R + Y+ IPMLP ELS+ +CS+ N R L+C + + Sbjct: 293 AHYVKEKTNLDSEALKRGTSIYIANGVIPMLPSELSNGICSINPNVDRFALSCDIEIDQH 352 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD-------WQPESEAIAEQVRLLAQIC 344 G N + + + I SK +L Y QV + + + + + + ++ Sbjct: 353 GNNV-NYKIYKSVINSKFRLTYKQVQAFFDKDNNFLSLEQKKSSYVKELETMLTNAYELS 411 Query: 345 QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVL 404 +++ V + P+ + L E G V +I R + ++E+ M+ N A+ L Sbjct: 412 LILHKYKEAQGYVDFEIPEPKIFLNEDGTVKEIKIHKRVYSEILIEDFMVRTNEVVAKYL 471 Query: 405 RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDG---FCKLRRELDAQPT 461 D +Y +H +L L G+++ +T + + + + Sbjct: 472 SDLKMPVLYRIHENPSEEKLQSLKTNLTALGINIKNINSITSSANDFSKFVYQTRNQRND 531 Query: 462 GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 F++ R A S HFGL E Y +TSPIR+Y D++ HR+L ++G+++ Sbjct: 532 YFINLLFLRTMQKAIYSLNNIGHFGLASEFYCHFTSPIRRYPDLLVHRILTMHLEGKSSQ 591 Query: 522 R-------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 D + + ER V D +A FLK + G +F A+IV + Sbjct: 592 EILNHFDSKLDSYAQLNSNSEQKAIEIERKVNDLKFAEFLKFQTG--QKFKAQIVSVLNF 649 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 G+ V + G I + E TV YK+ + +DV I + Sbjct: 650 GIFVEF-EFGGSGLIHKSNFFDGS---YEANEMLTVFASETKSYKIGEYVDVVIIATDLL 705 Query: 635 TRSII 639 I Sbjct: 706 EGKID 710 >UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7B5_HAHCH Length = 657 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 197/651 (30%), Positives = 300/651 (46%), Gaps = 22/651 (3%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M + L L Q KQ L R EG VK + FGF +D + F+ P +M+KV GD Sbjct: 1 MLNSDALTQLKQFKQDLRIANNRFEGTVKGSPGRFGFAVLDDGRECFLNPDEMQKVFPGD 60 Query: 59 RIIAVI-HSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 RI+ + +K R+ A+ + + L FVG+ + + PD + I + Sbjct: 61 RILVEVSQDDKGRDVAKVVQHMRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPKK- 119 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA--- 174 + D + + +HP + AE+ + I + LA++NL+ Sbjct: 120 -RQQAHVNDLVLCRVLQHPFPEGK-PQAEVVKIIGKPGASGLEVNYMLAKYNLQAHNRAS 177 Query: 175 --PDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 + ++ E R+DL FVTID+AST+DMDDALFA A P+ +L+ AIADP+ Sbjct: 178 INEAELQKQVAAELEKRKDLRETPFVTIDAASTQDMDDALFATARPEGGWELLAAIADPS 237 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 I EG +DK A+ + Y +PMLP +L++ CSL++ E R L C M + ADG Sbjct: 238 TLIPEGGDIDKYAQRLGSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQIDADG 297 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 I + A I A L Y++V+ L + +A + + ++ R Sbjct: 298 AI-SSYSIEEAAIRCAANLTYEEVATALASGDASAHAYDATLQAL---NEVKAALASHRR 353 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 HALV +DRPDY+ L E G+V +I + +A+ IVEEAM+AAN CAA L+ + Sbjct: 354 AHALVNEDRPDYQLELDENGKVKNIHRKINSVAHSIVEEAMVAANRCAADFLKQNTERSL 413 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR-RF 471 Y H GF P D + ++ D ++ T +GF K LDA P I R Sbjct: 414 YTSHSGFRPERLDQIKQIVSEQISDYDCSDLHTWEGFKKFMDFLDANPPEVPVKAIANRL 473 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQM 531 + +S +P PHFG+GL Y T+TSPIRKY D+ HR +K+V+K + + +Q+ Sbjct: 474 LARGALSDQPCPHFGMGLPHYTTFTSPIRKYVDLSIHRQIKSVLKNQKPHTLNAKAILQL 533 Query: 532 AERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA 591 E R R A + WL + + G F + + G + RL +NG + Sbjct: 534 QESLRAGRSAVNESETWLKCEYAQTLIGK--TFDGVVQHTTGSGFQARLDENGIEGMVNL 591 Query: 592 PFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 L E +++ + VTI+ V ME + I Sbjct: 592 GAL----QEKFRFDGTYFQHTGEHRQFRLEQPVKVTISAVDMEKKLIQMEL 638 >UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica RepID=Q7UFR0_RHOBA Length = 764 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 137/662 (20%), Positives = 257/662 (38%), Gaps = 45/662 (6%) Query: 18 QTPRAEGVVK-ATEKGFGFLEVDAQ---------KSYFIPPPQMKKVMHGDRIIAVIHS- 66 T + G + A GFGF+ + + F+P + GD + I Sbjct: 72 PTDQIRGTFRRAMGGGFGFVRPSSGGGNADADVPEDVFVPTGMTAGALEGDLVAVTIEPS 131 Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI----------PCRAAR 116 + + E+++ +F G P ++ + P Sbjct: 132 RRGGIEGKVVEVLQRARRQFTGTFFSSPQPD--QPGSDTIEGPVVYLDGVHYEAPVSVGD 189 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 ++GD E+ P + A + + + + + + ++ L E + Sbjct: 190 VRGLPLQDGDKIFVEIVDFPDEESGGGEAVILERLGSSKNPAIDTLTIMRQYALPDEFSE 249 Query: 177 GVATEMLDE---------GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V E ++ R+DLT + +TID D DDA+ + D + +L V Sbjct: 250 DVLDEAREQADAFDDDVVPTDRKDLTDMLTITIDPFDARDFDDAISLQR-EDGRWRLWVH 308 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ G KLD A+ R + YLP IPM+P +S+ L SL+ +R V + Sbjct: 309 IADVSHFVPPGGKLDVEARRRGTSVYLPDRVIPMIPEIISNHLASLQPERMRLVKTVEIE 368 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-EAIAEQVRLLAQICQR 346 + D TI + E A I S + Y+Q+ ++ + +Q + ++I E + + + + Sbjct: 369 MLDDLTITHS-EVHNAAIRSDKRFNYEQIDQFIASPAAFQKDWGDSICELLTHMHTLAMQ 427 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 + R + D PD + L G+V +++I+EE M+ N A L D Sbjct: 428 IRKRRFKDGALSMDMPDIKLELDRTGKVKGAYQTENTESHQIIEEFMLLGNEAVATWLDD 487 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLD 465 + ++ +H + L + +K GL D V + + ++ ++ Sbjct: 488 QELNFLHRIHAPPERRKLRQLTSFVKDLGLGFD--NVESRFEIQAVLDKVAGTTLENAVN 545 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE----TAT 521 + + S A H+ L E Y +TSPIR+Y D+ HRL++ +I+ + + Sbjct: 546 FAVLKSMSKAVYGPHREGHYALDKEHYCHFTSPIRRYPDLSVHRLVQRLIEQKSTPDESF 605 Query: 522 RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLV 581 ++ + ++ R AER++ FLK K G A I + G+ R + Sbjct: 606 AELVKLGHECSDAERNAAQAERELIQLKLLHFLKKKQGE--TLEAVISRVFADGIHARCL 663 Query: 582 DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 FIP L + + K +++ D + V I +V ++ R + Sbjct: 664 KLPVDGFIPVTELPSDQYRFERRG-QSLTGFKSGNRFRLGDHLTVRIGKVDLQDRQLYLE 722 Query: 642 PV 643 V Sbjct: 723 VV 724 >UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9F9_SORC5 Length = 790 Score = 521 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 165/663 (24%), Positives = 268/663 (40%), Gaps = 38/663 (5%) Query: 5 NPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAV 63 ++Q+ ++ EG + +GFGF+ + +I P M +HGD ++ Sbjct: 70 GQRFRTSQKQVEARGAEREGTLTVHPRGFGFVALGGAADDVYISPEAMGGALHGDTVVVR 129 Query: 64 IHSEKERE-SAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG----L 118 I + R E +V+ R G ++ + + PD ++ I + Sbjct: 130 ISTRSRRGVEGEIVRVVKRRHARVAGVLRRRGRSAWLEPDDGRVRGPIVIVPREPGAPLV 189 Query: 119 NHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE----- 173 + ++G AV + R P + + L + D V L R +E+E Sbjct: 190 PPDAEDGAAAVVSIARFPDLAEENPEGVLEAVLGTPGDPNVEVAKILVREGIEEEHAPEA 249 Query: 174 ------APDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V E L+ R DLT L TID D DDA++ D + +A Sbjct: 250 IAEAEAFGGEVPAEALE---GRTDLTHLPMPTIDPEDARDHDDAVWVIREEDGSYRAWIA 306 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ GS LD+AA R + YLP IPMLPR LS +LCSL +R L + Sbjct: 307 IADVSHYVRPGSALDQAALARGNSVYLPDRAIPMLPRALSSNLCSLLPGVIRLCLCVEVE 366 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ--PESEAIAEQVRLLAQICQ 345 L A + I S AKL Y V+ L T + PE+EA+ ++++ + + Sbjct: 367 LDATAAVR-RARVIEGYIRSIAKLTYPGVARALGFTPEPPRSPEAEALRNDLQVMWDLAR 425 Query: 346 RRGEWRHNHALVFKDRPDYRFILGE-KGEVLDIVAEPRRI----ANRIVEEAMIAANICA 400 R + D P+ + +L G +D+ A +++EE M+ AN Sbjct: 426 LLRGRRMRRGALDLDLPEAKVVLDPKTGAPVDVQKRSHDPGVAKAYQLIEELMLLANETC 485 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP 460 A+ + D+ ++ H D A + A + GL D E+ ++LDA P Sbjct: 486 AQFVVDQGIPTVFRYHAPPDQAKLERFATMCGELGLAFDPEDAADPKRLSVFLKKLDAHP 545 Query: 461 TG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 L + R A HFGL AY +TSPIR+Y D+ HR ++AV++GE Sbjct: 546 QKQVLHMLLLRAMKQAVYDVANVGHFGLASSAYLHFTSPIRRYPDITAHRAIRAVLRGER 605 Query: 520 ATRP------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 R E + +ER R ER+V D A ++ + G F + I Sbjct: 606 VDRSEAATERLREAAITASERERKAMEVEREVVDLHRALLMRSRLGD--TFEGTVTGIVG 663 Query: 574 GGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 GG+ V + D + L + E+ + + + + D + V I +V + Sbjct: 664 GGVYVNIEDPFVDVLVRMESLGPDQYEID-DEGLRVIGRRSGDRIAIGDAMLVQIEDVAI 722 Query: 634 ETR 636 R Sbjct: 723 LRR 725 >UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma penetrans RepID=Q8EW72_MYCPE Length = 727 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 145/676 (21%), Positives = 266/676 (39%), Gaps = 47/676 (6%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKS--YFIPPPQMKKVMHGDR 59 + L+ G + K F ++ +K +I + ++ D Sbjct: 61 LNNGKLILGYTNGKILDGQTFVGTIIINGKADAFFKIKDEKESFAYINKKNLNSALNNDT 120 Query: 60 IIAVIHSEKERES---AEPEELVEPFLTRFVGKV-------QGKNDRLAIVPDHPLLKDA 109 + + + A +++E F G + K IVPD + Sbjct: 121 VEICLMDKNTYPDLQDAVVTKIIERDRDFFTGTYYLKPTRNKFKKGIELIVPDDKKINLK 180 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 I + + G+ + ++ R D Y +++ + DD + +N Sbjct: 181 IEL----DDSSDLVNGNKVLFKIAR---ISDGVIYCSVSKILGHIDDVGNDIISIVYDNN 233 Query: 170 LEKEAPDGVATE--------MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDK 221 ++ E + E +E R+DL+ ++FVTID A+++DMDDA+ D Sbjct: 234 IDPEFDEETKEETSKIDFGFSQEEDAKRKDLSHINFVTIDPATSKDMDDAVCVVKNKDGT 293 Query: 222 LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPV 281 +L VAIAD + ++ S L ++A R + YL IPMLP +LS+++CSL E R Sbjct: 294 YKLYVAIADVSYYVKLHSNLWRSALKRGTSIYLVNQVIPMLPHKLSNNICSLNPFEKRYA 353 Query: 282 LACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLA 341 C M + +G NI+ + A I SK K YD V+D+++ + + I E + Sbjct: 354 QVCEMDIDKNGEFT-NIQVYPAIIFSKYKFAYDNVNDYIKLKKKIEEVPDEIYEMLNTSF 412 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 ++ + R + D + + IL E ++ D+V A +++E M+AAN Sbjct: 413 ELDDYLNKKREKDGYINFDIKEAKIILDENEKIKDVVIRETGPAQKMIENFMVAANEAVT 472 Query: 402 RVLRDK--LGFGIYNVHMGFDPANADALAALLKTHGLHVDAE-EVLTLDGFCKLRRELDA 458 +Y VH + + G D + K + Sbjct: 473 LKFHQLCPNLPFVYRVHAKPEEKRINDFKIEADKIGFIYDRNLTSWKPNTVSKWLEKNKN 532 Query: 459 QPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-- 515 P ++ + R + A+ T HFGL + Y +TSPIR+ D+I H LL+ + Sbjct: 533 NPNKDLINMILLRTMAKAKYQTANLGHFGLSISNYTHFTSPIRRLADVIVHYLLRMFVYE 592 Query: 516 -------KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 + + D+ ++ L ERDV +A ++K+K G + + + Sbjct: 593 PENYSEQEKDYILCNLDDFCLKANSCEVLAVETERDVNAMKFAEYMKEKIGCE--YNGFV 650 Query: 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT-VQIKGETVYKVTDVIDVT 627 I+ G+ V+L +N + F+ D V +Q++ T V V + + + Sbjct: 651 SYITNFGVFVQL-ENTIEGLVKPMFIKD--DYYVFNQKDLTYVGRNKNRVISLGQKVKIR 707 Query: 628 IAEVRMETRSIIARPV 643 + + ET+ I + Sbjct: 708 VVDANKETKKIDFEII 723 >UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota RepID=Q16PB6_AEDAE Length = 970 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 142/713 (19%), Positives = 256/713 (35%), Gaps = 88/713 (12%) Query: 6 PLLAQLKQQLHSQTPRAEGVVKATEKGF--GFLEVDA-QKSYFIPPP-QMKKVMHGDRII 61 L + + +G A+ F G + V++ ++ I + + + GD + Sbjct: 227 HLTTTQIHEGIKKGELLQGAFFASRDNFLEGNVRVESIEEPVLIQGRLNLNRAVDGDVVA 286 Query: 62 AVIHSEKER-----------------------------------ESAEPEELVEPFLTRF 86 + + E +A +++ ++ Sbjct: 287 IKLLPKSEWKCPSGVVLVDEQAVDNEAVETADPEFEQEDGADRVPTATVVGIIKRKWRQY 346 Query: 87 VGKV----QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRS 142 G + + R + + I + V + P + + Sbjct: 347 CGILAANPMASSTRHLFIASDRNIPR-IRIETRQSAQL---ITQKIVVAIDYWP-RHSKY 401 Query: 143 FYAELTQYITFGDDHFVPWWVTLARHNLEK---------EAPDGVATEMLDEGLVREDLT 193 + + + V L H++ + P T +E R DL Sbjct: 402 PIGHFVRALGGIGEKDTENEVILLEHDVPHGSFSAEIQSQLPKLPWTVDPEEYRKRVDLR 461 Query: 194 ALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNY 253 + ++D D+DDAL A+ L + +++ V IAD T +I G+ LDK A +RA T Y Sbjct: 462 DITICSVDPPGCTDIDDALHARRLDNGNIEVGVHIADVTHFIKPGTPLDKEAGLRATTVY 521 Query: 254 LPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVY 313 L I M+P LS +LCSLR E R +C L DG N +F + I+SKA L Y Sbjct: 522 LVDKRIDMVPDVLSSNLCSLRGGEERLAFSCIWELD-DGANIINTKFHKSVIKSKAALTY 580 Query: 314 DQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-G 372 + +++ A+ +RLL ++ + R ++ + P+ RF + + Sbjct: 581 QEAQLIIDDPTQTNQT----AQSLRLLNKLAKILKRRRIDNGALVLASPEIRFNIDSETH 636 Query: 373 EVLDIVAEPRRIANRIVEEAMIAANICAARVLR-DKLGFGIYNVHMGFDPANADALAALL 431 + +D+VA+ N +VEE M+ AN+ A ++ + + H AN D L Sbjct: 637 DPIDVVAKKLLDTNSMVEEFMLLANVSVAAKIQSEFPECAMLRRHPCPPDANFDPLKKAA 696 Query: 432 KTHGLHVDAEEVLTLDGFCKL-RRELDAQPTGFLDSRIRRFQSFAEI------STEPGPH 484 G +D L L + + L R A + H Sbjct: 697 SYQGFQIDTSCGKNLATSLDLAVKPDNPYFNTLLRILATRCMMQAVYFISGTIQQQEYFH 756 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ------DEITVQMAERRRLN 538 +GL Y +TSPIR+Y D+I HRLL A I + ++ + R R+ Sbjct: 757 YGLASPIYTHFTSPIRRYADVIVHRLLAACIGADATYPALLDKQASSQLCNNLNYRNRMA 816 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPA-----PF 593 + A R F +D+ + I+ + + ++V + G I Sbjct: 817 QYAGRASVALHTHLFFRDRTEDE---EGYILFVKKNAIQVIIPKYGLEGTIYVAGKNNEK 873 Query: 594 LHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA--EVRMETRSIIARPVA 644 L V ++E T Q G+ + D I V ++ ++ + ++ V Sbjct: 874 LKKDGPSFVYNEETQT-QSCGDVEFHAFDPITVRLSLDSTNVQHQRLVFELVT 925 >UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes scapularis RepID=B7QBQ1_IXOSC Length = 956 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 135/702 (19%), Positives = 247/702 (35%), Gaps = 93/702 (13%) Query: 16 HSQTPRAEGVVKATEKGF--GFLEVDAQ-----KSYFIPPP-QMKKVMHGDRIIAVIHSE 67 +G +A+ + + G + + +S I + + +H D ++ E Sbjct: 237 IKSGKYEQGKFQASRENYLEGNVVIGGDNEGESRSILIQGRGHLNRAVHDDLVVVETLPE 296 Query: 68 KER------------------------------------ESAEPEELVEPFLTRFVGKVQ 91 ++ + ++ + G +Q Sbjct: 297 EQWSLPSGLVLLDETQDEDEDKGDEEAKLSKKRAVSNKVPTGRIVGILRRKWRPYCGILQ 356 Query: 92 GKN----DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAEL 147 N R VP + + V + P + R L Sbjct: 357 PSNIKEATRHLFVPAERRIPKI----RIETRQADVLCRQRIVVSIDSWP-RDSRYPQGHL 411 Query: 148 TQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEML--------DEGLVREDLTALDFV 198 + + D V L H++ + V + E REDL L Sbjct: 412 VKALGEVGDRATENQVLLLEHDIPHQCFSRSVLDCLPSLPWTIGPKEEKNREDLRHLCIC 471 Query: 199 TIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFN 258 ++D D+DDAL + LP+ ++ V IAD + ++ G+ LDK A R T YL Sbjct: 472 SVDPPGCTDIDDALHCRELPNGNYEVGVHIADVSYFVRPGTALDKEAANRGTTVYLVDQR 531 Query: 259 IPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSD 318 I M+P LS +LCSLR E R + +S + + + +F + I+S+A L Y + Sbjct: 532 IDMVPELLSANLCSLRGGEERLAFSAIWEVSPEAEVL-HTKFHKSIIKSRAALTYAEAQA 590 Query: 319 WLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDI 377 +++T ++ + +R L ++ + R + + + RF + + + +D+ Sbjct: 591 RIDDTSL----NDELTLGLRGLNRLAKILKAKRIANGALTLASSEVRFHVDSETHDPIDV 646 Query: 378 VAEPRRIANRIVEEAMIAANICAARVL-RDKLGFGIYNVHMGFDPANADALAALLKTHGL 436 + N +VEE M+ AN AR + ++ + H PAN + L + G Sbjct: 647 QTKQLLETNSMVEEFMLLANASVARHIFQEFPECALLRRHPAPAPANLEPLVKAGHSKGF 706 Query: 437 HVDAEEVLTLD-GFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGL 489 V+ E L L + L R + A + E H+GL + Sbjct: 707 VVEVESGLRLAESLDRAVDPEQPYFNVMLRMVATRCMARALYFCSGCVAPEDFDHYGLAM 766 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ------DEITVQMAERRRLNRMAER 543 Y +TSPIR+Y D++ HRLL + E E+ + R + + A R Sbjct: 767 PFYTHFTSPIRRYSDLMVHRLLGVCVGAEATYPDLVHKNKCQELCNNLNYRHNMAQYAGR 826 Query: 544 DVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVC 603 F +DK + ++ + ++V + G A L D Sbjct: 827 SSVALYTQAFFRDKVLDE---EGYVLFVRENALQVLMPRFGLEA-----TLFLKEDGWSY 878 Query: 604 SQENGTVQIKGETVYKVTDVIDVT--IAEVRMETRSIIARPV 643 QE T Q G + D + V + ++ + ++ + V Sbjct: 879 DQEANT-QTCGGVTLRQFDRLVVQLSVDSRNVQHQKVVVKLV 919 >UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF96_ACHLI Length = 728 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 139/646 (21%), Positives = 259/646 (40%), Gaps = 40/646 (6%) Query: 15 LHSQTPRAEGVVKATEKGFGFLE-VDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESA 73 + + A G + ++ FL + K I + M D ++A I Sbjct: 49 IQLKKRYALGKITI-KRTIAFLMMPEGAKDIAIDLFDLNGAMESDIVLADIVGYNPY--- 104 Query: 74 EPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 +E++ LT+ + V+ ++D+ + I + + +G + ++ Sbjct: 105 -IKEIIHSNLTKLIADVKIRSDKKMRFDANEAQNKLIIV---KDVPDYLVDGHVVLLDVT 160 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-------LDEG 186 + + + I +D + + + + V E+ E Sbjct: 161 EVTRTQ---IFTKFREVIGHKNDPDMEIVKIVYEYEWPLKFSKEVLNELHHIKIDHEYER 217 Query: 187 LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 R D+T VTID A +D+DDA+ + L + +L V IAD + ++ EGS L++AA Sbjct: 218 KTRRDITDKLVVTIDGADAKDLDDAISLEYLENGNFKLGVHIADVSYFVKEGSYLNEAAY 277 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 RA + YL IPM+P LS+DLCSL NE + + C M L+ D + N + +A+ I+ Sbjct: 278 NRATSVYLADRVIPMIPHGLSNDLCSLNPNEDKYTITCEMELNPDIEVV-NYDIYASIIQ 336 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 SK +L Y V+ + + + + + +I Q+ + R + + + +F Sbjct: 337 SKHRLTYHDVNQLF--KEHQSTGFKEVDKMLFTMNEIAQKLKQIRTKRGAIDFNSTELKF 394 Query: 367 ILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADA 426 +L G+VL + A ++E MI AN +R GIY VH D Sbjct: 395 VLDVNGDVLGVEERTTDEAEALIESFMILANETVSRHFFFNDLPGIYRVHEKPTSEKLDI 454 Query: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSR-IRRFQSFAEISTEPGPHF 485 G VD + +L +++ P ++ + + R A S +P HF Sbjct: 455 AFESSAKLGFRVDQSAKSSAQKLQRLTKKVAQTPYEYIINMILLRSMQKAIYSEKPIGHF 514 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI-----------TVQMAER 534 GL Y+ +TSPIR+Y D++ HR+++ ++ ++ + + + Sbjct: 515 GLASAYYSHFTSPIRRYPDLLLHRMIRDLMLNNPDAETLKKLKKHYRDLMPSYSEHTSNQ 574 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R ER+V +++ + F +IV + G V+L +NG + + Sbjct: 575 ERQAVNMEREVNKLKSRQYMAQFI--NQSFDGQIVSMMPSGFFVKL-ENGIEGLVNVRNV 631 Query: 595 HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 640 L+ E + Y++ D I V + +V +I Sbjct: 632 ---NQYLIYDDEALLFYTERGKRYRLGDKIRVKLIKVDEVENNIDF 674 >UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacteria RepID=A8I2E1_AZOC5 Length = 814 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 163/634 (25%), Positives = 260/634 (41%), Gaps = 39/634 (6%) Query: 40 AQKSYFIP-PPQMKKVMHG--DRIIAVIHSEKE----RESAEPEELVEPFLTRFVGKVQG 92 + P +++ G DRI+ + + +++E + +G + Sbjct: 148 DAPVILLHVPDKLRGPAPGLSDRIVVRVEPNDPAPGIGYTGRVIKVLEKARKQQLGVFRK 207 Query: 93 ----KNDRLAIVPDHPL-LKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAEL 147 + I+P L + G + ++GD EM + A + Sbjct: 208 APPGSSGGGRIIPIDKKNLGRELQVPP--GAENGAEDGDLVSVEMMH--QRVFGQPTARV 263 Query: 148 TQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDE----GLVREDLTALDFVTIDSA 203 + + V + H + P V E RED L VTID Sbjct: 264 KERLGSLATEKAISLVAIHAHGIPNAFPAKVIAEAEAARPATAKGREDWRKLPLVTIDPP 323 Query: 204 STEDMDDALFAKALPD----DKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNI 259 +D DDA+ A D + VAIAD A++ GS LD+ A +R + Y P + Sbjct: 324 DAKDHDDAVHAVPDDDPDNAGGFIVTVAIADVAAYVRPGSALDREALLRGNSVYFPDRVV 383 Query: 260 PMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDW 319 PMLP +S+DLCSLR E R LA RM + DG + + F + S AKL Y+Q Sbjct: 384 PMLPERISNDLCSLRPQEDRAALAVRMVIGKDGR-KRSHSFHRILMRSAAKLAYEQAQAA 442 Query: 320 LENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVA 379 ++ D + + +R L + R + D P+ + +L E G V ++ Sbjct: 443 IDGVSD-DTTAPLLESVLRPLYAAYACVKQARDARQPLELDLPERKILLKEDGTVDRVIV 501 Query: 380 EPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVD 439 PR A+R++EE MI AN+ AA L K I+ VH G A AL L T + + Sbjct: 502 PPRLDAHRLIEEFMILANVAAAETLEQKKVPLIFRVHDGPTLAKLSALREFLATLDISLP 561 Query: 440 AEEVLTLDGFCKLRRELD-AQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSP 498 + + F ++ +D ++ I R QS AE S+E HFGL L YA +TSP Sbjct: 562 KTDQVRPSHFNRILGMVDGGDSAPLVNQVILRSQSQAEYSSENYGHFGLNLRRYAHFTSP 621 Query: 499 IRKYGDMINHRLLKAVIK-------GETATRPQDEITVQMAERRRLNRMAERDVGDWLYA 551 IR+Y D++ HR L + EI+ ++ R AER+ D L A Sbjct: 622 IRRYADLVVHRGLLRTLGADADALPETATVETLAEISADISATERRAMAAERETVDRLIA 681 Query: 552 RFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ-ENGTV 610 L ++ G F I +R G+ V L + GA F+PA L +D + V Sbjct: 682 HHLAEQIG--AVFQGRITGATRAGLFVALDETGADGFVPAASLG--QDYYRFDETRQALV 737 Query: 611 QIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 + ++++ D ++V + E ++ ++ Sbjct: 738 GDRTGEMHRIGDRVEVKLVEAAPVAGALRFELLS 771 >UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC1_9ACTN Length = 711 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 148/717 (20%), Positives = 248/717 (34%), Gaps = 81/717 (11%) Query: 1 MFQDNPLLAQLKQQL----HSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMH 56 M ++N + + + P G V+ E ++ + Y + +++M Sbjct: 1 MGRNNKHKRGARNKRGPVRSERRPSLTGRVQLHEHS-AYVITENG-DYKVMGRGKREIMD 58 Query: 57 GDRIIAVIHSE-KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA--IPCR 113 GD + I + A E +VE VG Q I P LK I Sbjct: 59 GDTVAVSIKNSPHGERRAVIEGVVERAAISVVGTYQTAGPLGVIEPLDSRLKADFFILPE 118 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 GD VA + +P + + + + I D + +AR+ Sbjct: 119 DTSADRLGVHPGDAVVARILTYPTRLESGAV-TIERRIGGDDAPDLGVQYVMARYGYTDS 177 Query: 174 APDGVATEMLD---------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQL 224 P+ E + +R DL +TID D DDA+ + P+ +L Sbjct: 178 YPEAALDEAEGLSLDVSAALKDPLRRDLRDRFVITIDPVDARDFDDAVSLERTPEGGYRL 237 Query: 225 IVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLAC 284 V IAD + ++A +D A+ R + YL +PMLP LS+DLCSLR +E R Sbjct: 238 GVHIADVSHYVAWDGHIDLEARHRTTSVYLADRVLPMLPERLSNDLCSLRPDEDRLAFTV 297 Query: 285 RMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE--------------- 329 + L A G + + + + + I S+ ++ YD L G + Sbjct: 298 DIELDAQGRVR-HYDPYPSVIRSRVRMDYDGAEALLVRAGAVEYSVLEGAAEDVAAAEAS 356 Query: 330 ------------------SEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK 371 + + + + ++ + R R V D + R +L E Sbjct: 357 REEALERGLACEEAARGYNVDLGDFLVAANELAELRRRIRRARGSVDFDTAEIRALLDED 416 Query: 372 GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALL 431 G + IVA R A ++EEAM+ AN C A L D+ Y VH P + A L Sbjct: 417 GVPVQIVARERSCATSLIEEAMLLANECVAEWLADRDIEACYRVHEDPSPDSLHGAAVAL 476 Query: 432 KTHGLHVDAEEV----LTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFG 486 G+ D + D +++ + R A HF Sbjct: 477 AQLGIIDDRRAAGIALGSPDELQAAVDAAAGTANAPLVNTLLLRSMQRALYKPRNEGHFA 536 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGET--------------------ATRPQDE 526 L Y +TSPIR+Y D++ HR+LK + E R + Sbjct: 537 LAAPCYCHFTSPIRRYPDLVVHRVLKLQLAYEQLGGKDALVRTPRLIGKGRESLPRILPQ 596 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 I ++ R A A++ +D+ G R+A + +S G+ VRL Sbjct: 597 ICRACSDAERAADAASHATQKIKIAQYYEDRLGE--RYAGTVSWVSSMGLFVRLDLTQVE 654 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L E T Y++ + + ++ V + + + Sbjct: 655 GLVSIKSLGNEWFEFD-EDALTLTGADTGTRYELGQRVIIEVSRVNTTRGHLDFKLI 710 >UniRef50_B0EIJ5 Exosome complex exonuclease RRP44, putative n=2 Tax=Entamoeba RepID=B0EIJ5_ENTDI Length = 901 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 122/706 (17%), Positives = 237/706 (33%), Gaps = 83/706 (11%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGF--GFLEVDAQKSYFIPP-PQMKKVMHGD 58 F N L + +L S+ +G V+ F + ++ + + + + GD Sbjct: 208 FYPNHLTKEEITRLISEKKLVQGSVRMNRFNFKEATVYTTEKEEILVSGLEDINRAVEGD 267 Query: 59 RIIAVIHSEK---------------------------------ERESAEPEELVEPFLTR 85 + I + + + + +++ Sbjct: 268 IVALQILPKDQWKKESNTINDDYEKNEKEMNNTVHMENAMEVEGKPTGKIVGIIKRNWKP 327 Query: 86 FVGKVQGKN-----DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGD 140 G ++ ++ L +P + + + + Sbjct: 328 LPGYIKQESSGNYSTNLLFLPTDKRFP----PIRIKARDPAKLASQRILVLIDAW-DTTS 382 Query: 141 RSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEML--------DEGLVRED 191 + + D L H + E P+ V + D R D Sbjct: 383 KYPTGHYVATLGNVGDKASETEAILELHEIPHYEFPEIVLKCLPLLPFEITDDYLKGRYD 442 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFT 251 + +ID D+DDAL K LP+ ++ V IAD + ++ + LD+ A R T Sbjct: 443 FRKENVCSIDPPGCTDIDDALHCKILPNGNYEIGVHIADVSCFVKPHTALDEEAAKRGTT 502 Query: 252 NYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKL 311 YL I MLP+ L++ +CS+ N + L + + + + + S Sbjct: 503 VYLADRRIDMLPKPLTEVICSITQNTDTLTFSVVWELDKNANVINCT-YHKGIVHSYRAY 561 Query: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK 371 Y Q +++ + A+Q+R++ + ++ + R + + + + E+ Sbjct: 562 AYGQAQAVIDDKSNQS----EYAQQLRVMLMLSKKLKQKRIDAGALMLASSEIKIEKDEQ 617 Query: 372 GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADALAAL 430 + + N +VEE M+ AN+ A+ + D + H D + LA + Sbjct: 618 FNPIGVKEYQTYETNSMVEEYMLLANVWVAKKIYDAFPHCAMLRRHPPPDEHTFEWLANV 677 Query: 431 LKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGP 483 LK G +D L + K D + + R A+ S Sbjct: 678 LKHKGKSLDFSSSKALSESLDKCGTNEDPVVGRIMRILVTRCMQQAKYFSSGYFSYNEFR 737 Query: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-----ATRPQDEITVQMAERRRLN 538 H+GL E Y +TSPIR+Y D++ HRLL I + + EI + R + Sbjct: 738 HYGLAAEIYTHFTSPIRRYADVMVHRLLAQAIGFDQIDLTMSKEKMKEIADNINHRHTMA 797 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR 598 + A R FLKDK + ++ + + G+ V + G + L + Sbjct: 798 QHAGRASTQMYTLIFLKDK---EVTVDGYVIKVMKNGIVVNIPQYGLEVIV----LIDQK 850 Query: 599 DELVCSQENGTVQIKGETVYKVTDVID--VTIAEVRMETRSIIARP 642 +V + T+ + V D + ++I + I R Sbjct: 851 YGMVFDENENTLGNMNIK-FGVFDRVKGVLSIDKSNEFQLKPILRL 895 >UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHG7_9BACT Length = 763 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 137/661 (20%), Positives = 253/661 (38%), Gaps = 42/661 (6%) Query: 1 MFQDNPLLAQLKQQLHSQT------------PRAEGVVKATE--KGF--GFLEVDAQKSY 44 + ++ L K+ + +G+ AT +GF F+ +K Y Sbjct: 48 LMEEGILTKDRKKYHLQKMPKAKQPSPTPNPKLLQGIFDATPLSRGFSYAFIRTP-EKDY 106 Query: 45 FIPPPQMKKVMHGDRIIAVIHSEKE-RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDH 103 ++ + H D + K ++SA ++V+ +FVG++ +N + + Sbjct: 107 YVDAEDILNAFHNDIVAFEPKYRKGHQDSAIIRKVVKRSTEQFVGELIRRNGFSTFICSN 166 Query: 104 PLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKG-DRSFYAELTQYITFGDDHFVPWW 162 P + + + GD V ++ + ++ + + + V Sbjct: 167 PKVFRWFFV----SDPAQGENGDKVVLKVTNWGNPQMGKVPVGKVIEILGKSGEPEVELL 222 Query: 163 VTLARHNLEKEAPDGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFA 214 + ++NL E P+ V E ++ R DL L TID + +D DDA+ Sbjct: 223 AVIRQYNLPLEFPEDVIAEANLLSAEIKPEDYRNRRDLRNLYSFTIDPITAKDFDDAIAV 282 Query: 215 KALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274 + +L V IAD +++ + + A R + Y P IPMLP LS+ +CSLR Sbjct: 283 EKTSKG-WRLYVHIADVAHYLSVEGAIFQEASKRGNSFYFPKRVIPMLPERLSNLICSLR 341 Query: 275 ANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA 334 E + L + G I + + + + I S+++L YD+V + P + Sbjct: 342 PEEEKLCLTVQTDFDRKGQIIEQ-QIYESVICSQSRLNYDEVDELFAGKKTDIPI--PLQ 398 Query: 335 EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMI 394 + + + + E R N +F D P+ + E G + + +++I+E M+ Sbjct: 399 DILLEARALSRLLTEKRMNAGYIFFDLPEIEYEYDENGFLKCLTLAEETESHKIIENFML 458 Query: 395 AANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRR 454 AN A L IY +H D + L LL +G+ E L L Sbjct: 459 VANEFVATRLSQTAPATIYRIHNDPDFNKLERLIELLSYYGVKWVMYENLNKSIQYLLNS 518 Query: 455 ELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 + D + R A STE HF L +E Y +TSPIR+ D++ H L K Sbjct: 519 FPNEAYHKVFDRILLRSMKKARYSTEHIHHFALAMENYTHFTSPIRRLCDLVVHYLCKTW 578 Query: 515 IKGETATRP----QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVD 570 + + + +E+ +ERD+ +++K G + ++ Sbjct: 579 LCHTSNQKFTPSQLKHFAEVASEQEIQADQSERDIEMVYSLALMREKEGE--LYEGMVIS 636 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 630 ++ G+ V+L + I L E +E + + Y++ D + V I Sbjct: 637 VNSRGLIVQLEEIPVTGVIKEISLGEGNWEY-LEREMRYINRRTHKYYQLMDTLTVIIGY 695 Query: 631 V 631 V Sbjct: 696 V 696 >UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQK5_9SYNE Length = 779 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 143/715 (20%), Positives = 265/715 (37%), Gaps = 86/715 (12%) Query: 9 AQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHS 66 ++ K + EG ++ + KGF F D + ++ Q+ +GDR++ + Sbjct: 54 SRGKYRKIENEDVIEGKLRCSSKGFCFAIQDEEGADDIYVRESQLNTAWNGDRVLVQVTK 113 Query: 67 EKER---ESAEPEELVEPFLTRFVGKVQGKN---DRLAIVPDHPLLKDAIPCRAARGLNH 120 + R E + ++E + KV+ D+ +P L + + Sbjct: 114 DGSRRRSPEGEVKLILERANESVLAKVKAAETAADKFKAIPLDDRLLFELDIAESEEDLS 173 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT 180 E + E+ R+P+ ++++ + + + +H+L + + V Sbjct: 174 EAID-HLIHVEITRYPI-AQHPPQGKVSRILGSDAEDAADVDIVYCKHDLPRIFSEEVFI 231 Query: 181 EML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 + R DLT +TID ++ + +DDA+ D +L + ++D Sbjct: 232 AARGLPNRVRKSDIKGRVDLTEHAALTIDGSNAKVIDDAISLDITDDGYRRLGIHVSDVA 291 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ +D+ A+ R YL +PMLP + + LC+L ++ R ++ +T+ DG Sbjct: 292 HYVQPNDVIDRTARSRGMAVYLGDEIVPMLPPPIPNALCALVPDKDRLAISILITMDDDG 351 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ-----------PESEAIAEQVRLLA 341 + + E + I+ +L YDQ L D + E E + + + L Sbjct: 352 QVLE-YEIQPSVIQVSHQLTYDQAQAILVREEDEELEKLGFSPDDIEEFEPVMDLIDSLY 410 Query: 342 QICQRRGEWRHNHALVFKDRPD---------------YRFILGEKGEVLDIVAEPRRIAN 386 Q+ Q + RH + P +F ++G +V A Sbjct: 411 QLSQEVKQRRHERGSFELNLPQHEFPPEAEELAEYLSPKFQYDDEGSFGAMVVSDHMPAR 470 Query: 387 RIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE--VL 444 IV E M+ AN AR +++ G+Y VH + A+ L L + + E+ + Sbjct: 471 IIVTEFMLLANQLVARHIKELGIPGLYRVHRTPELADVQELVKLANNMEIDLQLEDVEQV 530 Query: 445 TLDGFCKLRRELD-AQPTGFLDSRIRRFQSFAEISTEPGPHFGLGL-EAYATWTSPIRKY 502 + + ++ L + A S PGPHFGL + +AY + SP+R+Y Sbjct: 531 APSDYRNFTEQFKASKSEKVLTYLLLATLKPALYSARPGPHFGLAIDDAYTHFASPVRRY 590 Query: 503 GDMINHRLLKAVIKGETATRP------------------------------QDEITVQ-- 530 D++ HRLL AV K R +E + Sbjct: 591 PDLLVHRLLHAVFKHGRDRRSTRSKDRVNLRHSSCHGKINWSVLPPAVQQEMEEQLTRAP 650 Query: 531 --MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + ER R+ + AE D+ A F++ G F I + G V L + Sbjct: 651 IKLTERERITQDAESDLEGLKKAAFMQAHTGE--VFHGLITGVQSYGFFVELEELLVEGL 708 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 + L E Q+ V K Y++ D ++V + V + I V Sbjct: 709 VHVSSLKDDWYEYRSRQQK-LVGRKNRQQYRLGDHVEVEVKSVDYYRQQIDLVAV 762 >UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0TXI0_FRAP2 Length = 766 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 156/670 (23%), Positives = 265/670 (39%), Gaps = 44/670 (6%) Query: 1 MFQDNPLLAQLKQQ-LHSQTP-RAEGVVKATEKGFGFLEVDAQKSYF---------IPPP 49 M +D L L P V A D++ F I Sbjct: 67 MVRDGQLEKDRSYYSLPEIAPIYITSKVTADR--------DSRLELFSHTLNTKVGIVSH 118 Query: 50 QMKKVMHGDRIIAVIHS--EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLK 107 Q K VM GD + A + ++ R AE + +V G D I P + Sbjct: 119 QAKMVMVGDEVTAKVLGLNKRGRIDAEIQTIVSRAQKTITGYYYKSFDCDFIKPVSKSMT 178 Query: 108 DAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLAR 167 I + + + AE+ +P A+ Q + + + Sbjct: 179 SDIVLLPPK---QKIEHNSLIEAEIIVYPSINSV-AVAKFKQEVEAVSPVKEAMMMATQK 234 Query: 168 HNLEKEAPDGVATEMLDEGL-----VREDLTALDFVTIDSASTEDMDDALFAKALPDDKL 222 ++L ++ + D R DL +FVTID +D DDA++A Sbjct: 235 YDLIEQWSKKTLRYLDDISDDVIVGNRVDLRNENFVTIDGEDAKDFDDAVYAYKTKSGSW 294 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 +L VAIAD + ++ + S LD AK R+ + Y PG+ IPMLP +LS+ LCSL+ NE R L Sbjct: 295 KLYVAIADVSNYVEKDSSLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSL 354 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ-PESEAIAEQVRLLA 341 C M +S +G + +F++A I SKA+L Y +V+ +E + ++ + + L Sbjct: 355 VCEMNISKEGKL-SRYKFYSAVINSKARLTYTEVAKLIEKKQNTIVEKTPELVPNIFDLY 413 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 ++ + + R + D + + IL + + IV R A+R++EE M+ AN+ AA Sbjct: 414 ELYKVLHQARQERGAIDFDTVETQIILNDHNHIESIVPRHRNDAHRLIEECMLVANVAAA 473 Query: 402 RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL--TLDGFCKLRRELDAQ 459 + + VH + L L HG+H+ + T ++ + + Sbjct: 474 KFTIKHKKTSPFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDSIKDR 533 Query: 460 PT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 P + R + A S HFGL Y +TSPIR+Y D++ HR++K++I Sbjct: 534 PDYDDIQMMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEY 593 Query: 519 T------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 I +++ R A + V +WL F++D G A+I ++ Sbjct: 594 EHGGADYKPSELANICENASDQERNADGASKQVENWLKCYFMQDYIG--HVLEAQIKHVN 651 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVR 632 G+ L D I + + ++ + + VYK+ I V + Sbjct: 652 GLGLFAELKDMYIEGLIHVSAIPGD-YYIYDEAKDILIGKRTHKVYKIGQDITVRVVRAD 710 Query: 633 METRSIIARP 642 ++ I Sbjct: 711 LDRIHIDFEL 720 >UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF06_9ACTN Length = 694 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 160/689 (23%), Positives = 268/689 (38%), Gaps = 81/689 (11%) Query: 26 VKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIA---------VIHSEKERESAEPE 76 ++ G+GF++ + +FIP MK GD + +R Sbjct: 2 LEVMPSGYGFVKTAEGE-FFIPESAMKSAFDGDVVAVSRASGGDGNRRARRTDRPQGRVA 60 Query: 77 ELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 +V VG+ + +VP+ P ++ I R +EGD + +P Sbjct: 61 RVVTRAHASIVGRYEIAEPYGVVVPEDPRIRHDIF--TLRRDASTAREGDIVRVRITAYP 118 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD-----EGLVR-- 189 G + + + + D + + +ARH L D + + +R Sbjct: 119 EAGQ-PAFGSIEEVVGHEGDAGIDVDLIVARHTLATCFSDDALAQAASAEAGIDRALRDE 177 Query: 190 --EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKI 247 DL TID + D DDAL + D L++ V IAD + +++ + LD A+ Sbjct: 178 GYRDLRHRITFTIDPSDARDFDDALSFDEV-DGLLRVGVHIADVSRYVSWATPLDFEARA 236 Query: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307 RA + YL +PMLP +LS+D+CSL+ N R + + S + ++ + A IES Sbjct: 237 RATSVYLVDRVLPMLPEKLSNDICSLKPNVARRAVTVDLYYSHALELV-RVDAYPAVIES 295 Query: 308 KAKLVYDQVSDWLEN------------------------------------------TGD 325 KA+ VY+ V LE+ GD Sbjct: 296 KARFVYEDVQACLESMRALGSSDLEGRETPRYACSADELSGSCTLDGALRSALGSSVAGD 355 Query: 326 WQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIA 385 AIA ++ L +I + R + DR + + L ++G L + R A Sbjct: 356 DMHGIRAIAARLESLHRIARALRARRARAGGIDFDREETKVRLDDQGRPLSVDLRRRNDA 415 Query: 386 NRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLH----VDAE 441 +VEEAMI+AN AR++RD IY VH D + + +L G + A Sbjct: 416 TSLVEEAMISANEAVARIMRDAGAACIYRVHEAPDSGDLIDIVPILDEFGYDDAVSLSAF 475 Query: 442 EVLTLDGFCKLRRELDAQPT-GFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIR 500 + + + +P + + R A + E PHFGL AY +TSPIR Sbjct: 476 AMGSPKAVQAVLARAHGRPEGSLVSMLVLRAMKQARYAPECQPHFGLASAAYLHFTSPIR 535 Query: 501 KYGDMINHRLLKAVIKGETATRP-----QDEITVQMAERRRLNRMAERDVGDWLYARFLK 555 +Y D++ HRLLKAV++G T +I + + ++ A R+ + L Sbjct: 536 RYPDLMAHRLLKAVLRGRDGTTSAQEAALPDIADHASRQEKVAETAARESQELKMYELLS 595 Query: 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGE 615 + G F + +S G VR+ + GA F+P L + S ++ Sbjct: 596 EHIGEP--FDGMVSGVSTSGFYVRI-EMGAEGFVPMRDLG--EFFHLDSARRMLSGVESG 650 Query: 616 TVYKVTDVIDVTIAEVRMETRSIIARPVA 644 V ++ D + + + V R+ + Sbjct: 651 DVVRLGDAVRIRVVAVFPYARTATFALAS 679 >UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUX4_OPITP Length = 833 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 155/691 (22%), Positives = 265/691 (38%), Gaps = 67/691 (9%) Query: 14 QLHSQTPRAEGVVKATEKGFGFLEVDA---------QKSYFIPPPQMKKVMHGDRIIAVI 64 +L G ++ G F+ ++A Q + + GDR++ + Sbjct: 146 RLPLGPDEYIGRIQFRAGGSAFVVLEATGGRPADPSQPPIQVFAEDTDVALPGDRVVVRV 205 Query: 65 H-SEKERESAE----PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA--RG 117 + R E E ++E VG ++ + +VPD P + G Sbjct: 206 FAGRRGRRPGEKIGGVERVLERGRDTVVGDLRRRGRDYLVVPDDPRFVYEVAVSDPARSG 265 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 + + GD V ++ + D E+ + + ++NL P Sbjct: 266 VKPAPQPGDKVVVKLHAWNRRHD-PLTGEIESRLGRTHEPQAELLAIFQKYNLVTTFPAD 324 Query: 178 VATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 V E E R D TID +D DDAL + L +++ + IA Sbjct: 325 VEREAATLPDRVHPRELAGRLDYREQPVFTIDPDDAKDFDDALSYEPLHGGDVRVGIHIA 384 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D + ++ G+ LD+ A+ R + YL G IPMLP +LS+ LCSL + R A +T + Sbjct: 385 DVSTYVRPGTALDREAQRRGNSTYLVGTVIPMLPEKLSNGLCSLVEGQDRLCKAVFLTFA 444 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSD-WLENTGD----------------------- 325 +G +++ F I S+ +L Y Q E+ D Sbjct: 445 KNGRLKETT-FANTAIRSRKRLTYKQAYALMFEHDLDRIRALPLPPKHQTGSTGRALSAL 503 Query: 326 WQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIA 385 E + VR L +I R R H + D P+ + + E+G + + Sbjct: 504 SDAELVDLQSWVRALWKIASRLRHDRMAHGSLDLDMPETKIFVDEQGYADRLEKIEHDES 563 Query: 386 NRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLT 445 ++++EE M+AAN AR+ R +Y VH DP D LL T +H ++ Sbjct: 564 HQLIEEFMLAANEALARLTRTHSLPSLYRVHDEPDPDKLDEYRQLLATFDIH--TGDLTR 621 Query: 446 LDGFCKLRRELDAQPTGF-LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGD 504 + KL R L P G+ L +++ R A HFGL + Y +TSPIR+Y D Sbjct: 622 REELVKLIRTLSTHPQGYTLRTQLLRSLRKAAYRATADGHFGLNKKDYTHFTSPIRRYAD 681 Query: 505 MINHRLLKAVI---KGETATR--------PQDEITVQMAERRRLNRMAERDVGDWLYARF 553 ++ HR+ + +G + + ++ + AER+ F Sbjct: 682 LVVHRVFDFYLVKHQGGRPAHGHTSYNLGHVESLGEHLSLTEINSAEAERESVKVKLLEF 741 Query: 554 LKDKAGTDTR--FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQ 611 + + + FAA + D+ + G V LV++ F+P L ++ + Sbjct: 742 FERELAKKKKTPFAAVVTDVRQNGFFVELVESMTFGFVPTHTLSDDH-YVLNNAGTMFTG 800 Query: 612 IKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + + + V D I+V + +V R I RP Sbjct: 801 RRHKRRFAVNDRIEVVVEKVDRYKRLIDFRP 831 >UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WY09_9DELT Length = 803 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 160/663 (24%), Positives = 244/663 (36%), Gaps = 50/663 (7%) Query: 22 AEGVVKATEKGFG-FLEVDA------QKSYFIPPPQMKKVMHGDRIIAVI----HSEKER 70 G A G G F+ FI P Q H D + + H+ + Sbjct: 79 IRGRYMALRSGAGGFVTPLGDNGQVTGPDIFIHPLQAGDAWHQDMVRVALSPRSHARGKS 138 Query: 71 ESAEPEELVEPFLTRF-VGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 + E++E V + R P + + + G + Sbjct: 139 QEGRIVEVLERGCREVPVHVIHVTGRRALCRPADSRMPFDVSVELPEDMERPS-GGSLLL 197 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM------- 182 + + A L Q + DD V + H + +E P V E Sbjct: 198 VAPEK--RLAADLWQARLLQSVGREDDIAVQEDLVKLNHEVPREFPPRVQAEADALPSAP 255 Query: 183 -LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + RED+ AL VTID A D DDA+ +A P L VAIAD + ++ S L Sbjct: 256 RHADMAGREDVRALPLVTIDGADARDFDDAVQVEARPGGGWLLRVAIADVSHYVRPRSAL 315 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 D A R + Y P PMLP L D LCSLR +E R + + SA G F Sbjct: 316 DTEALARGNSWYFPTSVEPMLPPALCDGLCSLRPDEDRLAMLAEIPFSATGQ-PGKPRFA 374 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQ-------PESEAIAEQVRLLAQICQRRGEWRHNH 354 A + S A+L YDQV L + + P + + + + ++ + E R Sbjct: 375 AVVMRSAARLTYDQVKACLLDRDEQARAALAAGPRGQEVLDMLETAFELYRCLREARQRR 434 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK------- 407 + D P+ + +KG +L + R A+R++EE MIAAN AR L Sbjct: 435 GSLDFDLPEPEYSFDDKGRLLRVSRRVRHDAHRLIEEFMIAANEAVARHLGGLKADGSPE 494 Query: 408 ---LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL 464 +Y VH DP ++L L+ + + R++ FL Sbjct: 495 GAPKEPFLYRVHPQPDPERLESLFDSLEAIDPEL-VPVKPAASALQGILRDVQGSDREFL 553 Query: 465 DSRI-RRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI----KGET 519 R+ R A E HFGL AY +TSPIR+Y D++ HR LKA + Sbjct: 554 VGRLCLRAMPQARYQPENEGHFGLASRAYCHFTSPIRRYADLLVHRALKASLGLYDGALP 613 Query: 520 ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVR 579 A + + Q+ R R ER++ L L+ + G RF + ++ G+ V Sbjct: 614 AGQKLLRVADQLNRRERDALDCEREMARRLACMALEGRVGE--RFRGVVAGVNDFGLFVE 671 Query: 580 LVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 L + I L + + V + + + ++V +AEV I Sbjct: 672 LNEMPVEGMIRVEDLGDDWYDFDV-RRQCLVGQRSGLCWSMGQSLEVVLAEVHSGRLEIR 730 Query: 640 ARP 642 P Sbjct: 731 LLP 733 >UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC79_9DELT Length = 660 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 157/636 (24%), Positives = 255/636 (40%), Gaps = 49/636 (7%) Query: 27 KATEKGFGFLEV---DAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFL 83 G+GF + D ++S FIPP ++ + GD I V ++ E +V Sbjct: 2 HVNPGGYGFAQPLSGDEKRSVFIPPGYLRGALDGDEIEVVAWESEKGLEGRIEAIVTRKR 61 Query: 84 TRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK------EGDWAVAEMRRHPL 137 TR VG + + D P + + C A K G VA + +P Sbjct: 62 TRIVGVLVEFGGGWILEVDDPRIIWPVVCVAGPKGRKGSKAPRPDMPGMVVVANIVNYPG 121 Query: 138 KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVR 189 D ++ + + L +E V E + + R Sbjct: 122 SRDPEIEVQVERVLGEPGALETEVQKILIDRRIEDFFDPKVLAEAAEVPEIVLDEDLENR 181 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDD----KLQLIVAIADPTAWIAEGSKLDKAA 245 DL L F+TID D DDA+ + L +D +L VA+AD + ++ EG+ +D+ A Sbjct: 182 ADLRGLAFMTIDPPDARDFDDAVCVELLGEDPQTADYRLHVAVADVSHYVQEGTAIDEEA 241 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 + R F+ YLP +IPMLP ELS +CSL R + M ++A G ++ E AA I Sbjct: 242 QRRCFSTYLPDRSIPMLPPELSSHMCSLVPKRDRLAMVTSMRVNAAGQTSEH-EVRAAII 300 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 S+ +L Y +V++ LE ++ +R R R + D + + Sbjct: 301 HSRRRLTYAEVAEELEGAEQLGKKARGRVFALRAC---SDRLRNARMRRGAIELDLAEAK 357 Query: 366 FIL--GEKGEVLDIVAEPRRIANR----IVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 +L ++ + D+V + ++EE MIAAN + + ++ VH Sbjct: 358 VVLEEDDRTRIRDVVKSRSSKSMARAYNLIEEMMIAANEAVGALAVEHGLPAVFRVHDLP 417 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEIS 478 D L G D E + T G K + LD + L+ + R + A+ + Sbjct: 418 DEEKLTTLTQAAHILGTKADPERLRTPRGAQKFLKRLDGKSFASALNMLMLRAMAQAQYA 477 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-------------TATRPQD 525 E HF L AY +TSPIR+Y D+I+HR+LKA + + + Sbjct: 478 VENVGHFALASPAYVHFTSPIRRYPDLISHRVLKAWVAKKGGPAGPKAVLPRMPGREASE 537 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 ++ +ER R AER+ + A F++D+ G RF + +S+ G+ V++ Sbjct: 538 AQALRSSEREREISGAERETQNLFAALFMRDRIGD--RFDGRVSGMSQFGLFVQIESPYV 595 Query: 586 IAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYK 619 + L R E E G V K V Sbjct: 596 DGMVKVADLEKDRKEPYYRDETGVRMVGEKSGKVIT 631 >UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH3_9FIRM Length = 688 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 134/615 (21%), Positives = 234/615 (38%), Gaps = 34/615 (5%) Query: 44 YFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDH 103 ++P + K+ D ++ + + ++ LT G + K + D Sbjct: 85 VYVPKNKKMKIFDKDEVLVRL-----KPEPSLIKVFNHGLTNITGVMIVKKKKTFFYSD- 138 Query: 104 PLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWV 163 L R FK+ V ++ ++ + Q + DD V Sbjct: 139 --LDLHCSIRVVNEKEFSFKKRTKVVCQIVKYAD----PLEVRIIQVLGHPDDAGVDISA 192 Query: 164 TLARHNLEKEAPDGVATE--------MLDEGLVREDLTALDFVTIDSASTEDMDDALFAK 215 L + + + + E DE R+D+ L VTID +D DDA+ Sbjct: 193 MLTSNQVRQVFNGKIVKECKRIPAKVQKDELENRKDIRGLLTVTIDGDDAKDFDDAISIV 252 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 L V IAD + ++ E S LD+ A +R + Y+ +PMLP +LS+ +CSL Sbjct: 253 KNEKG-YVLYVHIADVSHYVKENSALDQEAYLRGNSIYVCDRVVPMLPFDLSNGICSLNP 311 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE 335 N R + C M + G + F + I S + Y +V+ L+ E + E Sbjct: 312 NVDRLTITCAMQVDEKGNLL-TYNIFPSVIHSDKRCTYKKVNACLDGDKAILQEYSEVKE 370 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 + L + + + HN + + + + I+ + G +D+ R A +++EE MI Sbjct: 371 LLFTLESLAKLLKKQSHNRGCIDFNTKEAKIIMDKNGYPVDVNVLERGFAEQMIEECMIL 430 Query: 396 ANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDA-EEVLTLDGFCKLRR 454 AN+C A + +Y VH DP + + + + D + + K Sbjct: 431 ANVCVAHHMHVNKIPSMYRVHENPDPKKVATICTVANSLRIPFDFYPDEVNASQIQKFLE 490 Query: 455 EL-DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 + D L R A HFGL LE Y +TSPIR+Y D++ HR+L A Sbjct: 491 SIQDENAYEVLSMVSLRSMQKARYDAHCLGHFGLALEEYCHFTSPIRRYSDLVVHRMLHA 550 Query: 514 VIKGETAT------RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 E + ++ ++E+ R M ER V D+ A++++ + G F Sbjct: 551 YCFKEQKRTPSNDEKKIEKQAFHISEKERDAIMMERMVNDYKKAQYMEKRVG--QVFEGT 608 Query: 568 IVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVT 627 IV + G V + DN +P L + V+++ + V Sbjct: 609 IVGVMSFGFFVEM-DNTVEGLVPVHTLSNDFYDYD-EDTMTLKGQTHGKVFQMGMRVRVV 666 Query: 628 IAEVRMETRSIIARP 642 +V+ E + Sbjct: 667 CTDVQREKGQVTFSL 681 >UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4AAR6_MYCHJ Length = 694 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 138/649 (21%), Positives = 250/649 (38%), Gaps = 33/649 (5%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGFGFLE----VDAQKSYFIPPPQMKKVMHGDRIIAVIH 65 + K G+ +AT FGF+E + + FIP + GD + I+ Sbjct: 54 EGKYYAPKFLKTTSGIFRATNSAFGFVEDKENPIQKNNVFIPGRFTASALEGDEVKINIY 113 Query: 66 SEKERES---AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 +++ + ++++ +GK P + K R + Sbjct: 114 ADRFKSDQVFGIVTKIIQRNNKFLIGKAFKNGKYWDFEPVN--FKGDFLFR--WNTTDDL 169 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM 182 ++ ++ + + + Q I + F+ + + + + V E Sbjct: 170 INDNYYKVKIIDY---QKNTLKISIIQKIGHKSEPFLYVKIPIIESEVSNKFSADVLEEA 226 Query: 183 LDE-------GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 R DL +TID T+D DDA+ K + L V IAD ++ Sbjct: 227 EKIEKEITNIEKNRTDLRDELVITIDGEDTKDFDDAISVKKTNEGNFLLKVHIADVAHYV 286 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 + S +D A+ R + YLP IPMLP ELS+ +CSL+ N R + ++ G Sbjct: 287 KQDSPIDVEAQRRGTSIYLPHTVIPMLPEELSNGICSLKPNVDRFTITMESLINKRGENL 346 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 +I+ + + I SK +L Y V+++ + + + + ++ ++ ++ N Sbjct: 347 -SIKIYPSVINSKWRLTYKDVNNFFNGKSSFNDTN--LEKMLKTAQELNTILSLFKKNQG 403 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 + + + IL E+G + + R + ++E MI AN + L + +Y V Sbjct: 404 YIDLAIDEIKIILDEQGFTESLKLKSRGTSEELIENFMIRANENVSEFLTKRKIPILYRV 463 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD-AQPTGFLDSRIRRFQSF 474 H DP +LK G+ + F + E+ FL I R Sbjct: 464 HNKPDPEKIMIFNQILKVLGVKNTLKLNSNSREFARKIDEIKTKNNDNFLKYSILRTMQK 523 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-QDEITVQMA- 532 A STE HFGL Y+ +TSPIR+Y D+I HR+++ I + +EI + + Sbjct: 524 AIYSTENIGHFGLAANFYSHFTSPIRRYPDLILHRIIRFFIFEKNKNFDFFNEILTKNSY 583 Query: 533 ---ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 E + ER + + ++K G F A+I I + G V + A + Sbjct: 584 LTTELEQKAFNLERKIVNIKKTEYVKKLIG--QTFNAQITSIIKSGFFVEINGL-FDAML 640 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 L ++ E+G +K+ + ID+ I V + I Sbjct: 641 SNKSLPNNENDPYQLTEDGFCIYNSRRRFKLGEFIDIKIESVNVWEGKI 689 >UniRef50_D1HK82 Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) n=11 Tax=Embryophyta RepID=D1HK82_VITVI Length = 937 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 123/743 (16%), Positives = 234/743 (31%), Gaps = 114/743 (15%) Query: 1 MFQDNPLLAQLKQQLHSQTP-------------RAEGVVKATEKG-F-GFLEVDA-QKSY 44 M + L ++ ++S+ +G ++ F ++ ++ Sbjct: 203 MEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEI 262 Query: 45 FIPPP-QMKKVMHGDRIIAVIHSEKE---------------------------------- 69 I M + GD + + + + Sbjct: 263 IIYGRGNMNRAFDGDVVAVELLPQDQWQEEKSLSIADEEDEEEEDVHLVPSSADDAPRNT 322 Query: 70 ---------------RESAEPEELVEPFLTRFVGKVQG----KNDRLA----IVPDHPLL 106 R S +++ + G ++ + V + Sbjct: 323 DLAQGSVGGTKAVLCRPSGRVVGIIKRNWHSYCGSLEPMPMPAGNGGIAHALFVSKDRRI 382 Query: 107 KDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLA 166 + + + R + I D V L Sbjct: 383 PKI----RIQTRQLGNLLDKRIIVAVDSW-DCLSRYPSGHYVRTIGEIGDRDTESEVVLI 437 Query: 167 RHNL-EKEAPDGVATEMLD----------EGLVREDLTALDFVTIDSASTEDMDDALFAK 215 +++ + V + R DL + ++D +D+DDAL Sbjct: 438 ENDINSRPFSLQVLACLPPLPWSVSSEDLANPCRLDLRHVCVFSVDPPGCKDIDDALHCT 497 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 LP+ ++ V IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLR+ Sbjct: 498 TLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRS 557 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE 335 + R + ++ I + ++ + I+S A L Y + ++++ P + Sbjct: 558 DVERLAFSVIWEMTPQAEII-STKYTKSIIKSCAALSYIEAQARMDDSRLMDP----LTM 612 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMI 394 +R + + + R + + +F + + + LDI R AN++VEE M+ Sbjct: 613 DLRNMNALAKVMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFML 672 Query: 395 AANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR 453 AAN+ A + + H + L GL++D L Sbjct: 673 AANVSVAEKILKHFPLCSLLRRHPSPTREMLEPLLRTAAAVGLNLDVSSSKALADSLDHA 732 Query: 454 RELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMIN 507 D + R + A S H+GL Y +TSPIR+Y D+I Sbjct: 733 VGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEFHHYGLAAPLYTHFTSPIRRYADVIV 792 Query: 508 HRLLKAVIKGETATRPQDE------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTD 561 HRLL A + + + R R +MA R + + + + Sbjct: 793 HRLLAASLGLYKLPTIFQDNAQLTSTADNLNYRHRNAQMAGRASVELHTLIYFRKRPTDT 852 Query: 562 TRFAAEIVDISRGGMRVRLVDNGAIAFIPA-PFLHAVRDELVCSQENGTVQIKGETV-YK 619 A IV I G V + G + P E V ++ V+ ++ Y Sbjct: 853 ---EARIVKIRSNGFIVFVPKYGIEGPVYLTPRGEKGGGEWVVDEQQQKVKKMDGSISYS 909 Query: 620 VTDVIDVTIAEVRMETRSIIARP 642 V + + + V + Sbjct: 910 VLQTVMIHMEVVEPQPNRPKLEL 932 >UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BU01_GRABC Length = 812 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 158/644 (24%), Positives = 256/644 (39%), Gaps = 61/644 (9%) Query: 42 KSYFIPPPQMKK-VM-HGDRIIAVIHS-EKERESAEPEELVEPFLTR-FVGKVQGKND-- 95 S + P + + G++++A + R + + R +G + Sbjct: 150 PSVLMHPEPRGRPALAPGEKVLARLRPIGHGRYEGRTIKRLGGDTPRPILGVYRLSEPVT 209 Query: 96 --------------------------RLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 +VP K A G + GD Sbjct: 210 LVPRSTRTSHAARQMLARQNASTAQPEGRVVPTDRRSKAEWLVPA--GEEGGAEPGDIVR 267 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGL-- 187 A H G + A + + + D + + H++ + PD +E Sbjct: 268 AMPLPHTGYGLKP--ARIIEKLGKIGDARSVSLICIETHDIPQIFPDEALSEARKARAVP 325 Query: 188 --VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 REDL + +TID D DDA+FA+ +D +LIVAIAD ++ GS LD+ A Sbjct: 326 LEKREDLRDIPLITIDGEDARDFDDAVFAERAENDGFRLIVAIADVAHYVRPGSALDREA 385 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 R + Y P +PMLP LS+ CSLR +E R L M ++A G + F + Sbjct: 386 FKRGNSCYFPDRVVPMLPEALSNGWCSLRPDEDRGCLFVEMMINAGGGKIRH-RFGRGLM 444 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 S A+ Y++V E + + L + R + D P+ + Sbjct: 445 RSTARRTYEEVQQAHEAGDET----------LDALYGAYHALIKARTARGTLDLDLPERK 494 Query: 366 FILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 IL E G V I+ PR ++R++EE M+ AN+ AA L +Y VH + Sbjct: 495 VILNEAGSVDAIIPRPRLDSHRLIEEFMVLANVAAAEELERLHRPCMYRVHAPPSDEKTE 554 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ-PTGFLDSRIRRFQSFAEISTEPGPH 484 AL L + G+ + + + +++ ++ + R QS AE + + H Sbjct: 555 ALRGFLDSFGISLPPAGQIHPRDLDHILKQVAGTEHAALINETMLRSQSQAEYNPDNIGH 614 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE------ITVQMAERRRLN 538 FGL L YA +TSPIR+Y D++ HR L A +K + DE I + R Sbjct: 615 FGLALSRYAHFTSPIRRYADLLVHRALIAGLKLGVGSLEDDEASRFVDIAEHITATERRA 674 Query: 539 RMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR 598 MAERD D A F+ D+ G RFAA I ++R G+ + + +NGA +P L Sbjct: 675 AMAERDAIDRYLAAFMADRVG--ARFAARISGVTRFGLFITVEENGASGIVPISSLPDDF 732 Query: 599 DELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 + +E + V+++ + V +AE T ++ Sbjct: 733 W-IHDEREQALIGRNSRAVWRLAQSVTVRLAEATPITGGLVFNL 775 >UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9GZQ2_GLUDA Length = 781 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 159/640 (24%), Positives = 248/640 (38%), Gaps = 50/640 (7%) Query: 44 YFIPPPQMKK-VM-HGDRIIAVIHSEK-ERESAEPEELVEPFLTRFVGKVQG-------- 92 F+ P Q + + G+R++A + R + R VG + Sbjct: 132 VFMHPEQKGRPALAPGERVVARLKRLGPGRYEGRTLRRLTDAPGRIVGVFRPTTLYDGPG 191 Query: 93 -------KNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYA 145 + +VP K A + E +E A PL G A Sbjct: 192 PLAPPRRHAEAGRLVPADRRAKAEWIIPAGETMGAEAEEVVVA----EPLPLAGSGLKPA 247 Query: 146 ELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDE----GLVREDLTALDFVTID 201 + + D + + H++ + P +E REDL + +TID Sbjct: 248 RIVARLGPMGDARSVSLLAIHTHSIPDQFPAEALSEAERARGVSPEGREDLRDVPLITID 307 Query: 202 SASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPM 261 D DDA++A+ D +LIVAIAD ++ GS LD+ A+ R + Y P +PM Sbjct: 308 GEDARDFDDAVYAEPDGDG-FRLIVAIADVAHYVRPGSALDREARRRGNSVYFPDRVVPM 366 Query: 262 LPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE 321 LP LS+ CSLR E R L + + A G + F + S A+L YDQ + Sbjct: 367 LPEALSNGWCSLRPGEDRGCLFAEIFIDAAGNKTRH-RFGRGIMRSAARLTYDQAQAIVG 425 Query: 322 NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEP 381 N + Q E+ + L + R + D P+ L G + I P Sbjct: 426 NVEESQQETGLPDGLINTLFTAWRALSTARARRGTLDLDVPERVVRLDTSGRITAIEPRP 485 Query: 382 RRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAE 441 R ++R++EE M+ AN+ AA L + +Y +H P A+A+ L G + Sbjct: 486 RHDSHRLIEEFMVLANVAAAEELERRRRPCLYRIHAPPSPERAEAMRDSLSAMGFDLPPP 545 Query: 442 EVLTLDGFCKLRRELD-----------AQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLE 490 L + + I R QS AE S + HFGL L Sbjct: 546 GALRARDLGAVLARAAQGEASGPASGTPVSGTLVSETILRAQSQAEYSPDNIGHFGLALP 605 Query: 491 AYATWTSPIRKYGDMINHRLLKAV----IKGETATR--PQDEITVQMAERRRLNRMAERD 544 AYA +TSPIR+Y D++ HR L + G A DEI Q++ R +AER+ Sbjct: 606 AYAHFTSPIRRYADLLVHRALIGMGTQPADGMPAADAACLDEIGEQVSTAERRAALAERE 665 Query: 545 VGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS 604 + A +L D+ G + F+ + ++R G V L GA +P L D Sbjct: 666 TTERYVAAWLADRVGAE--FSGHVSGVTRFGAFVTLTQTGATGLVPVSTLPD--DVWTHD 721 Query: 605 QENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 ++ T+ G ++ + V + E T ++ V Sbjct: 722 EKTQTLRGRHGGLALRLGQPVTVRLVEATPVTGGLLFALV 761 >UniRef50_Q54BH9 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54BH9_DICDI Length = 1006 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 129/724 (17%), Positives = 257/724 (35%), Gaps = 101/724 (13%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGF--GFLEV-DAQKSYFIPP-PQMKKVMHG 57 +Q++ ++ L + + +G+ + + + + + +K I + + + G Sbjct: 230 YQEHKPMSMLTEGIKG-GKLIQGIFRTSITNYREATVSNREMEKEILIQGIENINRAVDG 288 Query: 58 DRIIAVIHSE-------------------------------KERESAEPEELVEPFLTRF 86 D + + + K++ + + +++ + Sbjct: 289 DIVAVELFDQSKWNTPSTLIMLENEGVEEDDDSIAKDSLISKKQPTGKVVGIIKRNWKPY 348 Query: 87 VGKVQGKND-------------RLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 G V+ K D L +P + + G V + Sbjct: 349 CGAVEFKQDDNNTTTKTSTGLHFLYFMPIDKRIPKI----RIKSRQVSNLIGKRIVVAID 404 Query: 134 RHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLD-------- 184 + K + + + D V L + ++ V + Sbjct: 405 QW-DKNSKYPSGHFVKDLGPLGDKETESQVLLLQFDIPHHPFGAAVMKCLPSPDIMDRVT 463 Query: 185 --EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLD 242 + + R+DL ++D D+DDAL K L +++ V IAD + ++ EG+ +D Sbjct: 464 SADMVGRKDLRKECIFSVDPPGCTDIDDALHIKDLGKGIMEVGVHIADVSHFVQEGTAID 523 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 + A R+ + YL I MLP ELS +LCSL +N R +C ++ +E+ Sbjct: 524 EEAANRSTSVYLVDRRIDMLPGELSGNLCSLMSNVDRFAFSCIWKINQHTGEIIAVEYTK 583 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362 + I S A L Y+Q +++ +++ I +R L + + + R + ++ P Sbjct: 584 SIIRSCASLTYEQAQIRIDDKS----QNDQITVNLRNLNSLAKILRKQRFDRGALYLASP 639 Query: 363 DYRFILGE-KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFD 420 +F E G+ D+ R N ++EE M+ ANI A+ + + H + Sbjct: 640 QVKFKTEELGGDPSDVEIYQLRETNSMIEEFMLLANIWVAKKIYKHFPGCAMLRRHPTPN 699 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCK-LRRELDAQPTGFLDSRIRRFQSFAEIST 479 A D L L++ G L + D+ R S A+ + Sbjct: 700 KAAFDLLTKLIENKGYKFSTTTSKDLADSLDSAVDKNDSYFNTLCRIMTTRCMSPAKYFS 759 Query: 480 ------EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD-----EIT 528 E H+GL + Y +TSPIR+Y D+I HRLL + I ++ + + +T Sbjct: 760 SGSLPYEDFNHYGLATDIYTHFTSPIRRYPDIIVHRLLASAIGIQSVSLNLENKTISALT 819 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 R ++ + A R F K + + A I+ + V + G Sbjct: 820 ENNNFRHKMAQYASRGSTQLHTLIFFKGRKSVE---DAYIIRVKANAFVVLVPRYGFEGT 876 Query: 589 IPAPFLHAVRDE----------LVCSQENGTVQIKGETVYKVTDVIDVTI----AEVRME 634 + ++ + E+ T+ G ++V D + V I ++ + Sbjct: 877 VYVSDPNSSTATTNGGGGTSNIYNYNHEDQTLG-NGIHTFRVFDKVTVEIYVDDSKAHDQ 935 Query: 635 TRSI 638 I Sbjct: 936 KLKI 939 >UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N135_9GAMM Length = 658 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 190/652 (29%), Positives = 310/652 (47%), Gaps = 30/652 (4%) Query: 1 MFQDNPL--LAQLKQQLH--SQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMH 56 M + L L LK Q+ + EG V+ + FGF+ + +S+F+PP +M KV Sbjct: 23 MLNSDSLAQLKSLKTQIKTDQEANLQEGTVRGSAGRFGFVSNEQGESFFLPPDEMAKVFP 82 Query: 57 GDRIIAVIH-SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 GD I +K + A E+L++ + F G + +VPD L + I Sbjct: 83 GDEIRFSTKEDDKGKTQAIVEKLIKSYFKSFCGYFVKRGKAQFVVPDIHQLNNWIYIPPE 142 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + E DW E+ RHP + A++ + + + + + NL E P Sbjct: 143 --ACKDVNENDWLQCEVTRHPYPKGK-PQAKILKNLGQLSEPGFERQYAITKFNLSHEWP 199 Query: 176 DGVATEM--------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 D +++E+ R DL+ FVTIDS T DMDDAL+A+ D +L VA Sbjct: 200 DIISSELAILGEDRIPALSEGRVDLSDHAFVTIDSEHTRDMDDALYAEKTEDG-YRLHVA 258 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IADP+AW + LD+ A+ R + Y PG ++ MLP+ELS+ LCSL E R L C ++ Sbjct: 259 IADPSAWFGPNTSLDREARSRGNSLYFPGRSLAMLPQELSNGLCSLLEGEKRLALVCVLS 318 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 + DG + ++ EF AT+ S AKL Y+QV+++LE D + + + +L + Q Sbjct: 319 IGTDGEL-NHYEFKEATVTSHAKLSYNQVTEFLEGEKDAVK--AELQDSLLILHETTQAL 375 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + R + L+ +DR DY +G+ G++ IV R A ++VEEAM+AAN A+ L++ Sbjct: 376 HQGRIRNNLIMEDRDDYYLTVGDNGKLQSIVRTERNTAQKLVEEAMLAANKSCAQFLKEI 435 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDS 466 GI+ H GF + +++ + + L+G+ L R +DA+ + + Sbjct: 436 GI-GIFVDHPGFRTERIGDIKQIVQDKEIGFE-GNFAELEGYKSLIRAVDAKEFDEPIKT 493 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE 526 + RF S +E S E PH G+G E Y T+TSPIRKY D++ HR++KA + + DE Sbjct: 494 LLSRFLSRSEYSLEAKPHMGMGFECYTTFTSPIRKYSDLLIHRIIKAHLSEQKQLEINDE 553 Query: 527 ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + + R A WL ++L + +F I I+ GG+ V + + G Sbjct: 554 TIALLQDALVTGRRAVNLAEHWLKLQYLDKL--KENQFDGVISQINPGGLTVTITELGLD 611 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 FI A+ + + + + + V + + + R + Sbjct: 612 GFIDLRKNKALS-----FNRTYLMFEGEKQTFTLDQKVKVEVKKADLVDRKL 658 >UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LP7_SACD2 Length = 646 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 209/656 (31%), Positives = 333/656 (50%), Gaps = 26/656 (3%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M L L+QLKQ +H A G V +T FGF+ + + F+ P +M+ V+ GD Sbjct: 1 MLDKTTLSQLSQLKQAIHESKEYATGTVASTNGRFGFVRLTDGRDAFLDPEKMQFVLPGD 60 Query: 59 RIIAVIH-SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 + ++ ++K++ A E+L++ L RFVG + K + VPD P + I Sbjct: 61 EVKILVTTNDKKQLEATIEQLIDSPLKRFVGTYRVKGNAHFAVPDDPKVNRWIFIPP--K 118 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK---EA 174 KEG+ A++ +HP + + A++ + I DDH + + T+A+++L E Sbjct: 119 SRKGCKEGEKIAAKIIQHPAQDGK-AQAKVIERIGQPDDHHIEYKYTVAKYDLSPWNKEG 177 Query: 175 PDGVATEML-----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 D ++ +E RED T L FVTIDS +T DMDDA+ A D K L VAIA Sbjct: 178 EDEQLKKIRASIEAEEFGEREDYTQLPFVTIDSPTTRDMDDAVHI-AEQDGKTVLTVAIA 236 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 DP ++IA GS L K A+ +A + Y+ G IPMLP L++D SL + RP L C +TL+ Sbjct: 237 DPASFIAPGSPLAKLAERQAQSTYMLGGIIPMLPESLANDCFSLVEGKKRPALVCTITLA 296 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGE 349 DG +ED +F A I+SK KL Y QV+++LE T + A+ + L+++ R + Sbjct: 297 NDGAVED-YKFERAVIQSKYKLNYQQVAEFLEGTN-IEGLPADAADNISKLSELATLRYQ 354 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 +R H L+ +D+ DY L +KG++ +I R +A+++VEEAM+ N CA L Sbjct: 355 YRTEHNLIGQDQLDYDIRLDDKGKISEIRPRSRTVAHKLVEEAMLLTNQCAGEFLAQNKL 414 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 G++ VH GF + ALLK + + + ++ + L +R Sbjct: 415 -GLHTVHGGFRLDRIGEVNALLKEEQITPEGDITELEGNLQLIKALSANERQRNLIPALR 473 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV 529 R AE+S E GPH G+G + YAT TSPIR+Y D+ NH + +V+ G + Sbjct: 474 RMMQSAELSDEAGPHMGMGFKHYATSTSPIRRYADLYNHWAIHSVLTGSKPYTFKPHQLE 533 Query: 530 QMAERRRLNRMAERDVGDWLYARFLK-DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 ++ E + R A+R++ WL ++++ G + R ++ +++ G VRL++NG F Sbjct: 534 RLKETLQAGRQADREIYQWLLCQYVEASLIGFEGR--GKVRIVTQQGFGVRLIENGVDGF 591 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 I P E + T+ + G Y+ +DV + V E R I V+ Sbjct: 592 IAFPK----SQEKQFDAKRMTLTVNG-VTYRADCEVDVKVVSVDQEKRRIAYALVS 642 >UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XL74_HIRBI Length = 758 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 164/606 (27%), Positives = 259/606 (42%), Gaps = 29/606 (4%) Query: 57 GDRIIAVIHSEKER-ESAEPEELVEPFLT-RFVGKVQGKNDRLAIVPDHPLLKDAIPCRA 114 GD+ + + + A+ + +E T +G + + P K+ Sbjct: 115 GDKALCKVGKANDSLWYAKVIKKIENTTTSTVIGLFEANKHGGRVKPTSRKDKNEYLVE- 173 Query: 115 ARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEA 174 + L+ + + GD +++ K AE+ + + ++ + L H++ E Sbjct: 174 -KILSKDAETGDIVRISLKK--SKPYGPQMAEVVEIVGRMENPKSASLIALHTHDVPDEF 230 Query: 175 PDGVATEMLDEGLV---REDLTALDFVTIDSASTEDMDDALFAKALP----DDKLQLIVA 227 P + E + REDLT + +TID A D DDA+FA+ + + VA Sbjct: 231 PVEIIAEAENATAQKTAREDLTDIPLITIDPADARDHDDAVFARPDEDEGNNGGWIVYVA 290 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD A++ G+ LD A R + Y P PMLP LS + CSL+ NE+R A M Sbjct: 291 IADVAAYVQHGTALDDEAYKRGNSTYFPDRVAPMLPEALSAEQCSLKENELRETFAVEMR 350 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 SA+G + F T+ S AKL Y+Q ++ D + ++ L + Sbjct: 351 FSANGNKIGH-RFIRGTMRSAAKLSYEQAQAAIDGKPD-DKAGPLLETVLKPLWAAYECV 408 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 G+ R + D P+ R L + G VL + + R A++++EE MI AN+CAA L Sbjct: 409 GKARTRRQPLELDLPERRVTLDKDGTVLGVFTKDRFDAHKLIEEFMIQANVCAAESLEKA 468 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR-RELDAQPTGFLDS 466 IY VH AL L T G+ T + F L + + + Sbjct: 469 NSPLIYRVHDEPSDEKILALGFFLPTIGMKWARGAKKTAERFNDLLAQARRTEHEHLVSE 528 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA------ 520 + R QS A + E HFGL L YA +TSPIR+Y D+I HR L + Sbjct: 529 MVLRSQSQARYAPENFGHFGLNLAKYAHFTSPIRRYSDLIVHRALIRALSLGPDGLSDVE 588 Query: 521 TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 ++ +EI + R + AERD D F+ +K G + F I +++ GM V+L Sbjct: 589 SKRLEEIAEHLTTTERRSMAAERDATDRYLVAFMSEKVGAE--FQGRIAGVTKAGMFVKL 646 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQEN--GTVQIKGETVYKVTDVIDVTIAEVRMETRSI 638 D+GA FIPA L DE E+ V E Y++ + V + E T + Sbjct: 647 DDSGADGFIPAARLS---DEYWLYDEHNAALVAEGSEKRYEMGMPVLVKLEEATPLTGGL 703 Query: 639 IARPVA 644 + ++ Sbjct: 704 LFEMLS 709 >UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YQJ4_AZOPC Length = 586 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 124/575 (21%), Positives = 230/575 (40%), Gaps = 27/575 (4%) Query: 90 VQGKNDRLAIVPDHPLLKDAIP--CRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAEL 147 ++ + I+ I + + ++ + + + + + ++ Sbjct: 16 LKEEKIFQRILNLFKAFPREIFDCQQISYRIDPTSQTNSLIIVRVLE--ILCKKKILVKI 73 Query: 148 TQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVREDLTALDFVT 199 + + +NL + P+ E RED T Sbjct: 74 DKSKYQLKNTKSTIPSIQDEYNLPCKYPEEAEKAAQKIPNHITLTEISNREDFRETLTFT 133 Query: 200 IDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNI 259 ID + +D DDAL K L ++ ++ V IAD T +I S +DK A R + YL I Sbjct: 134 IDPQNAKDFDDALSIKKLSNNFYEIGVHIADVTHYIKPDSSIDKEALKRGTSIYLVDKVI 193 Query: 260 PMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDW 319 PMLP L +++CSLR NE + + + I N I S + Y++ + Sbjct: 194 PMLPESLCNEVCSLRPNEDKLCFSVIFEMDGKAKI-HNYRIRRTIIRSDHRFTYEEAQEI 252 Query: 320 LENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVA 379 +E + E ++ V L + + E R ++ + + + +F L +G LDI Sbjct: 253 IERSFATNYEDCSLNSSVFTLNCLAKILREKRFSNGSIDFVQREIQFDLDREGNPLDIYL 312 Query: 380 EPRRIANRIVEEAMIAANICAARVL-----RDKLGFGIYNVHMGFDPANADALAALLKTH 434 + AN++VEE M+ AN A ++ + +Y VH D L L+++ Sbjct: 313 KKNNEANQLVEEFMLLANKTIAEIVGKVPKNKRAKPFVYRVHGLPDIEKIKNLKQLVRSF 372 Query: 435 GLHVDAE--EVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEA 491 G ++ + T L +++ + +++ R A +TE H+GL + Sbjct: 373 GYKLNIKRINNETSKNISSLFKQVQGTREQNLIETIALRTMEKAIYTTENVGHYGLAFKY 432 Query: 492 YATWTSPIRKYGDMINHRLLKAVIKGE--TATRPQDEITVQMAERRRLNRMAERDVGDWL 549 Y +TSPIR+Y DMI HRLL+ + + + + + + +E+ + AER Sbjct: 433 YTHFTSPIRRYPDMIVHRLLEKYLNRKYSVSKKSLERLCKHCSEQESIAIQAERASIKAK 492 Query: 550 YARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT 609 F+ K G F I +++ G+ V L NG IP +L EL + Sbjct: 493 QVEFMSTKVGN--TFDGVISNVTEWGLYVEL-GNGCEGLIPMRYLDDDFYELD-EKTYRL 548 Query: 610 VQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 + + +Y + D + + + +E R + P++ Sbjct: 549 IGKTKKHIYCLGDPLQIRVIHSNLEKRQLDFAPIS 583 >UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 Tax=Caenorhabditis RepID=RRP44_CAEEL Length = 961 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 135/702 (19%), Positives = 245/702 (34%), Gaps = 96/702 (13%) Query: 16 HSQTPRAEGVVKATEKGF--GFLEVDAQ-KSYFIPPPQMKKVMHGDRIIAVIHSEKERE- 71 + G + + + + +D Q S+FI + ++GD + + E + Sbjct: 246 IASGTIKRGNFSVSRENYREATVIIDDQLTSWFITGNNCNRAVNGDTVAVQLLPEDQWTA 305 Query: 72 ---------------------------------------------SAEPEELVEPFLTRF 86 +A+ +++ + Sbjct: 306 PEKKIRLRDVEEYVKTADDMGNEDEENDDENDEPKAKKSKKMTVSTAKVVGIIKRNWREY 365 Query: 87 VGKVQGK----NDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRS 142 G + R P L+ E V + P + + Sbjct: 366 CGMLLPSTVKGARRHLFCPAERLIPRI----RIETEQAETLSQQRIVVAIDHWP-RDSKY 420 Query: 143 FYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEMLDE-----------GLVRE 190 + I V L H++ + V + E L R Sbjct: 421 PLGHYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEWEPDLTENRGPLPRV 480 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL L ++D D+DDAL K + +D ++ V IAD T ++ G+ +D A +R Sbjct: 481 DLRDLTICSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTHFVRPGTAIDDEAALRGT 540 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 T YL I MLP LS +LCSLR E R +C T+++ I+ ++++ + I+SKA Sbjct: 541 TVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSADIQ-SVKYHKSLIKSKAA 599 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 L Y++ + +++ + +A +R L ++ + R + + + RF + Sbjct: 600 LTYEKAQEIIDDPKEQ----NDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDMDW 655 Query: 371 KGE-VLDIVAEPRRIANRIVEEAMIAANICAARV-LRDKLGFGIYNVHMGFDPANADALA 428 + ++ + + +VEE M+ ANI A L + + H + L Sbjct: 656 ESRTPKKVMEKQHLDTHSMVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESYKPLV 715 Query: 429 ALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI---STEPGP- 483 + G + E L D + + + L R + A T P P Sbjct: 716 EAARHRGFEIIVESGKGLADSLNRCVDKKNPMLNRLLRMLTTRCMTQAVYFSAGTVPVPQ 775 Query: 484 --HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA------TRPQDEITVQMAERR 535 HFGL Y +TSPIR+Y D+I HRLL A I + +I + R Sbjct: 776 YQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSGLLNQARCTKICTNINYRH 835 Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 + + A R R+ K K ++ + G++V + G + I Sbjct: 836 KQAQYAGRASVQLNVVRYFKGKV---ETCEGFVMGVRNNGIQVFVPKYGLESIIVLQT-- 890 Query: 596 AVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRS 637 + E +V++ G+ V K + + V I V + + Sbjct: 891 SAASGTTIDVEEMSVKVNGDVVIKELEPVTVRI-SVNEKNQQ 931 >UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA Length = 721 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 143/678 (21%), Positives = 254/678 (37%), Gaps = 49/678 (7%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK-SYFIPPPQMKKVMHGDRI 60 ++N L+ +G++ KG GF++ D + Y++ + + D + Sbjct: 57 LENNRLVIGY-LDYEFDHEIKQGIITINSKGDGFIKEDNTEIEYYVNKKYLNGALKKDSV 115 Query: 61 IAVIHSEKERE---SAEPEELVEPFLTRFVGKVQ--GKNDRLAIVPDHPLLKDAIPCRAA 115 V ++ + A E+V +VG+ V D PL Sbjct: 116 KFVKLKKEPKNNLQDAAVIEIVGHAKDHYVGQFITLPNGGYYIFV-DDPLF----YLNIN 170 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 G + ++ K AEL I +D + + ++ Sbjct: 171 LKDTTGLVNGHKILFKIISQTTKD---AIAELVHIIGHKNDVGSDVLSIVYDNGIDPTFD 227 Query: 176 DGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 V + +R + + ++ID ++D+DDA++ K L D + L ++ Sbjct: 228 PQVVDLASKLEFYVDEHQNKIRRSIIDREIISIDPVGSKDIDDAVYVKKLNDQRYFLGIS 287 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ + LD A R + YL IPMLP +S+++CSL E R + C M Sbjct: 288 IADVSFYVQPNTILDADAFKRGTSTYLVDRVIPMLPHNISNNICSLNEGEFRMCITCDMV 347 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 + DG I + + A +++ ++ YD+V+D+ E ++ + + E + ++ Sbjct: 348 IDKDGKICWK-DVYPAIMKNYRQMSYDEVNDFYEGKSRFESATLTMKEMLLEAKELHHIL 406 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + V D + + IL E G +DI R+ A +VE+ MIAAN + Sbjct: 407 RNKKIKDGYVDFDIKEPKIILDETGVPIDIKIYERKTAQMMVEDFMIAANEAVTMFAEEH 466 Query: 408 ----------LGFGIYNVHMGFDPANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRE 455 IY VH N K ++ D E + L+ Sbjct: 467 MDKTLKEFNLEMPFIYRVHDKPSIINLQKFEIEAKKLSFNISHDFENIQPNTISNWLKMN 526 Query: 456 LDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 + + + R + A HFGL + Y +TSPIR+Y D+I HRLL I Sbjct: 527 DNHVNLPLISKLLLRSMAKASYEIINTGHFGLASDNYTHFTSPIRRYPDLIVHRLLWMFI 586 Query: 516 KGETATRPQDE---------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA 566 + + IT + + + ERDV +A ++ G + F Sbjct: 587 FDSQSYTDKQRVELVNKLKLITEESNKNEIIAVKTERDVNAAKFAEYMNLHIGKE--FIG 644 Query: 567 EIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDV 626 + +S G+ V L +N I L + + + V K + + V + + V Sbjct: 645 VVTTVSSFGVFVEL-ENTIEGLIRIKNLKDDFYDFIP-ENMTLVGQKRKKIITVGNKVRV 702 Query: 627 TIAEVRMETRSIIARPVA 644 + E TR I VA Sbjct: 703 RVIEANKLTRKIDFELVA 720 >UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQL2_AKKM8 Length = 756 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 154/696 (22%), Positives = 257/696 (36%), Gaps = 66/696 (9%) Query: 1 MFQDNPL--LAQLKQQLH-SQTPRAEGVVKATEKGFG-FL-------------EVDAQKS 43 M ++ L L + + L + G+++ G FL + +A Sbjct: 47 MEEEGKLVRLQKGRYALKRERRNLVHGMIRILRSGKILFLPRKGDPAAAALGWDTEAVPE 106 Query: 44 YFIPPPQMKKVMHGDRIIAVIHSE----------------KERESAEPEELVEPFLTRFV 87 + P + + GDR+ + + A EE+ E +R++ Sbjct: 107 LELKPNHLGTALDGDRVAVRVERKAARGRRNIRRNRFSSPDADMKARVEEVTERARSRWL 166 Query: 88 GKVQG-KNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAE 146 G + KN ++ D +I A E G E + ++ + Sbjct: 167 GVFRTGKNKPGRVLGDGVSSPSSI--ELAEKPAMEVLPGQLVSVEPITCGEEK-KAPRGK 223 Query: 147 LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVREDLTALDFV 198 + + + + D+ V + ++ L E P V E+ E RED T + Sbjct: 224 IVEVLGYPDEPHVDMEAVIRKYGLSVEFPASVLRELETLPQTPSPGELARREDWTDRTVI 283 Query: 199 TIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFN 258 TID AS D DDA+ A P L V IAD + ++ G LD A R + YLP Sbjct: 284 TIDPASARDFDDAISITATPSG-WTLAVHIADVSHFVKPGGSLDGEALRRGNSTYLPDRV 342 Query: 259 IPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSD 318 +PMLP LSDDLCSLR + VR C M G + F A I SKA+L Y + Sbjct: 343 LPMLPHRLSDDLCSLRPDVVRLTKVCEMKFDKKGKML-RARFADAFIRSKARLTYQEAFA 401 Query: 319 WLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIV 378 L+ + VR + R+ + D P+ R ++ + G V I+ Sbjct: 402 MLKGNDKG-----EVPSTVREAWNLASILRRNRYAKGALDLDFPEVRAVMDKDGRVTGII 456 Query: 379 AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHV 438 E +++++EE M+AAN A L++ IY VH D A L + +G Sbjct: 457 TEEYDESHQLIEECMLAANEAVALALKNGNRPTIYRVHEEPDSAKLFEFGQLCRLYGH-- 514 Query: 439 DAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTS 497 ++ +L + + P L + + A TEP H+GL Y +TS Sbjct: 515 PVHDIDQRQYLNELMKSIKGSPDEQLLKLALLKSLMRARYDTEPLGHYGLATPNYCHFTS 574 Query: 498 PIRKYGDMINHRLLKAVIKGETATRP-------QDEITVQMAERRRLNRMAERDVGDWLY 550 PIR+Y D++ HR L ++ +E ++E R++ AE+D Sbjct: 575 PIRRYADLVVHRSLNPLLANPPKGAKGAGSTGRLEEDAEHISETERISASAEKDANRMKL 634 Query: 551 ARFLKDKAG--TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG 608 +L+ + A + + G+ + + + L R V Sbjct: 635 FEWLEGQCYADHPEVHEALVTETRHFGVLLEIPRLQIKGLVKPDKLPGGR--WVYEAFAS 692 Query: 609 TVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA 644 + +V + V +V E + V+ Sbjct: 693 RWKNDHGSVLCAGLRVPVIPVKVDREQQWADFAIVS 728 >UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n=18 Tax=Cyanobacteria RepID=B2IW45_NOSP7 Length = 784 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 123/700 (17%), Positives = 237/700 (33%), Gaps = 75/700 (10%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGFGFLE--VDAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 + K + S+ E ++ + KGF F V+ + +I + +GDR++ + E Sbjct: 55 RGKYRRVSEEGIIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKE 114 Query: 68 KER---ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R E + ++E + +++ VP L + + E + Sbjct: 115 GSRRRSPEGEVKLILERSNHTLLARIKQVETGFRAVPLDDRLLFELKIQPNEVKLEEAID 174 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD 184 E+ R+PL + Q + + + +H+L + PD V Sbjct: 175 -HLVHVEVLRYPL-AQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPDHVLEAAAK 232 Query: 185 --------EGLVREDLTALDFVTIDSA--STEDMDDALFAKALPDDKLQLIVAIADPTAW 234 + R DL L +TI+ T+ +++A + L V I D + + Sbjct: 233 LPKKLLKADLKNRLDLRNLFTLTIEGVNGDTKVIENAFSLEKNLAGNWLLGVHITDVSHY 292 Query: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294 + LD+ A R + YL +P+LP +++ CSL R ++ +T+ Sbjct: 293 VQPDEALDREALKRGKSVYLGELVLPILPPVVAER-CSLIPGSDRLTISFLITIDPQSGE 351 Query: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354 E + I + L +Q L + Q +S + + ++ L + + R N Sbjct: 352 VLEWEIQPSVINVETALTTEQAQAILTG--ESQVQSPQVVQILQDLQALQTGVKQVRLNR 409 Query: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYN 414 + + P + ++G +L V ++ E ++ N A L I+ Sbjct: 410 GSLQLNLPPSQNAYYDEG-ILGAVVVNDLPVRSLLTELVLLVNQLIATHLNALGVPAIWR 468 Query: 415 VHMGFDPANADALAALLKTHGLH--VDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRF 471 V D + + L G+ +D E + + L P L ++ Sbjct: 469 VQGTPDVEDVQEMLKLAVNLGVDLTLDPEVDIQPLDYQHLTTAFAESPSEQVLTYLLQDT 528 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR--------- 522 + ST G HFGL L Y +++P+R+Y D++ R+ +++ R Sbjct: 529 LKPSAYSTTKGSHFGLALPQYVHFSAPLRRYPDLLMQRVYYTLLENGRDRRNTRVRERVN 588 Query: 523 -----PQDEITV--------------------QMAERRRLNRMAERDVGDWLYARFLKDK 557 +EI Q+ +R + + AE D+ A+ +K + Sbjct: 589 LRHSSSHEEINWNVLPPELQQELQSDLTRVIVQINDREKEVQEAEADLAGLQKAQLMKQR 648 Query: 558 AGTDTRFAAEIVDISRGGMRVRLV--------------DNGAIAFIPAPFLHAVRDELVC 603 G F I + G V + + L E Sbjct: 649 IG--QVFQGVITGVQSYGFFVEIEVPAAEVESSSNPGVPLRVEGLVHVSSLKDDWYEYRA 706 Query: 604 SQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 Q K Y++ D + V + V + I V Sbjct: 707 RQ-QALFGRKNRASYRLGDRVAVQVKSVDYYRQQIDLVTV 745 >UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organisms RepID=Q6KI25_MYCMO Length = 708 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 145/654 (22%), Positives = 245/654 (37%), Gaps = 39/654 (5%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFL--EVDAQKSYFIPPPQMKKVMHGDRIIAVIH----- 65 + G + KGFGF+ E D + S F+ + +GD + + Sbjct: 56 YYMPKFLGEFNGTISINSKGFGFVDFEDDKKDSVFVSKFNLNGSFNGDLVSVKSYCESNE 115 Query: 66 SEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 +EK++ ++++ VG +N ++ N KE Sbjct: 116 AEKQKCFGVISKIIKRNTQYLVGWSFLENGKMKFKAFDEKYNVTQFLFLDNVTN--LKEN 173 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--- 182 + S ++ + I ++ + + + ++ E + E Sbjct: 174 TLIKVRIVEF---NKMSSIVQIVKTIGHLNNPYDEVALVIEESDIVTEFNENTLIESANI 230 Query: 183 -------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 +E R D VTID T+D DDA+ + D L V IAD + ++ Sbjct: 231 PQSISREKEEINNRRDYREKLIVTIDGDDTKDFDDAILVEK-KGDNFILSVHIADVSYYV 289 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 E S +D A R + YL IPMLP LS+ +CSL N R + M + G Sbjct: 290 KENSPIDLEALSRGTSIYLADRVIPMLPESLSNGICSLNPNVDRFTMGIEMEIDEKGRTI 349 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + E F + I SK +L Y +V+ + N + + + E + ++ +++ Sbjct: 350 RS-EIFPSIINSKKRLTYKEVNRFYNNEISFD-DVPNLNEMLNTSLELSNILQKFKIADG 407 Query: 356 LVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 415 V + + + IL + G V I R ++ ++E M+ AN A L +Y + Sbjct: 408 YVDFEIEEPKVILDKDGRVERIDVRERGLSEVLIENFMVRANEEVATFLAKNKIPTLYRI 467 Query: 416 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLDSRIRRFQSF 474 H D L ++KT ++ + F K +L D + F+ I R Sbjct: 468 HEKPDNLKISKLNGIIKTLNINAFFQSGNDSLKFSKTLNKLKDQRFDNFIKILILRSMQK 527 Query: 475 AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR------PQDEIT 528 A+ S HFGLG + Y +TSPIR+Y D++ HR+++ +I + I Sbjct: 528 AKYSPNNVGHFGLGSKFYLHFTSPIRRYPDLLTHRIIREIIFKNQKDKISSFNAILKRIG 587 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 +E ER+V D A F + K G + F +V I G V +N Sbjct: 588 EMNSESENKAVELERNVIDIKKAEFYESKIGKN--FVGIVVSILPFGFFVEF-ENKVDVL 644 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 I + E GT I + + D ++VTI R I A Sbjct: 645 IHKDNIVDA----YKINEEGTKIILKDKTILIGDQVNVTIIGTNRLARKIDAIL 694 >UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribonucleases n=4 Tax=Mollicutes RepID=Q2ST22_MYCCT Length = 704 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 137/677 (20%), Positives = 277/677 (40%), Gaps = 47/677 (6%) Query: 1 MFQDNPLLAQLKQQLHS-QTPRAEGVVKATEKGFGFLEVDAQ---KSYFIPPPQMKKVMH 56 + ++N + L+ ++ +G +K KGFGF+ + + +FI + +H Sbjct: 40 LEKNNKITISLENNIYLLDQIYKKGTIKLNPKGFGFINDINKINDEDHFIAGVDLNNSIH 99 Query: 57 GDRIIAVIH-SEKERESAEPEELVEPFLTRFVGKVQGK--NDRLAIVPDHPLLKDAIPCR 113 D ++ ++ E R A +L++ +G++ L +P+ Sbjct: 100 QDEVVYILKQEEDNRLKAIVIDLIKRNKVYLIGEINRSFDKRFLDFIPNDKSFDSFRFVI 159 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 + +++E + A++ +R + L + I +++ Sbjct: 160 VNKN-EFKYEEFNIIKAKIIS---CKERKIFIRLIRIIGNSKKASDRILAIAEEFDIKTS 215 Query: 174 APDGVATEM----------LDEGLVRED--LTALDFVTIDSASTEDMDDALFAKALPDDK 221 E L R++ L VTID ++D+DDA+ + L ++ Sbjct: 216 FDKQTLDNAKQINLSTDKLEKEFLKRQNNSLVNKTIVTIDGIDSKDLDDAICVEKLENNN 275 Query: 222 LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPV 281 +L VAIAD + ++ + LDK A +R + YL IPMLP LSDDLCSL N + V Sbjct: 276 YKLFVAIADVSYFVRYKTSLDKEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLV 335 Query: 282 LACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLA 341 C M + + + + + + I SKA+L YD+V+++ + + + + Sbjct: 336 FVCEMEFDNNANMLNK-KVYESVIISKARLNYDEVNNYF--KTKTWTHDDKTKKMLDIAY 392 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 ++ ++ + + D + + IL + V+DI + A +++E+ M++ N A Sbjct: 393 ELYKKLENLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVA 452 Query: 402 RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLD-------GFCKLRR 454 ++ K +Y H D LKT G++ LD + Sbjct: 453 ELIYQKDLPFLYRNHNKPDEDELINWYKSLKTFGINPKLTNKQVLDPIFINHTLSQIKEQ 512 Query: 455 ELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 D L+ + R+ A+ E HFGL + Y +TSPIR+Y D++ HR LK Sbjct: 513 IKDETEVELLNISLLRYMDKAKYGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQY 572 Query: 515 IKGETATRP--------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA 566 + + + ++++ + + + ER+V ++ +K + + A Sbjct: 573 LITKDLEKTSLENNANYVNKVSNIINDTETKSVECEREVIKACMCEYMLNKV--NNTYTA 630 Query: 567 EIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDV 626 I + + G+ ++L DN + +++ +LV + N + T Y++ + V Sbjct: 631 TISAVLKFGIFIQL-DNLVEGLVHISNMNS---DLVYDETNRILIKPDNTYYRMGQKVKV 686 Query: 627 TIAEVRMETRSIIARPV 643 + V ++ R+I + Sbjct: 687 KLINVDIKKRTIDFVLI 703 >UniRef50_P37202 Exosome complex exonuclease dis3 n=4 Tax=Ascomycota RepID=DIS3_SCHPO Length = 970 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 128/714 (17%), Positives = 242/714 (33%), Gaps = 105/714 (14%) Query: 16 HSQTPRAEGVVKATEKGF--GFLEVDA-QKSYFIPPP-QMKKVMHGDRIIAVIHSEKER- 70 +G++ + + G + V K + + + + GD + I + + Sbjct: 261 IKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQGDIVCIQILPQDQWK 320 Query: 71 --------------------------------------ESAEPEELVEPFLTRFVG---- 88 +A+ +++ +VG Sbjct: 321 TEAEEIADDDEDVVVSTAAEPDSARINDLELITKRNAHPTAKVVGILKRNWRPYVGHVDN 380 Query: 89 -KVQGKNDR----LAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSF 143 + + + P + R G V + R Sbjct: 381 ATIAQSKGGSQQTVLLTPMDRRVPKIRF----RTRQAPRLVGRRIVVAIDLW-DASSRYP 435 Query: 144 YAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLDE--------------GLV 188 + + + L ++++ P V + +E Sbjct: 436 EGHFVRDLGEMETKEAETEALLLEYDVQHRPFPKAVLDCLPEEGHNWKVPADKTHPLWKN 495 Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIR 248 R+D +ID +D+DDAL A LP+ ++ V IAD T ++ + +D A R Sbjct: 496 RKDFRDKLICSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAASR 555 Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESK 308 T YL I MLP L DLCSLR R +C + + I + F + I SK Sbjct: 556 GTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANII-KVHFTKSVIASK 614 Query: 309 AKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 Y +++ Q + + + +R+L ++ + + R + + P+ R Sbjct: 615 EAFSYADAQARIDD----QKMQDPLTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQT 670 Query: 369 GEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADA 426 + + +D+ + N +VEE M+ ANI A+ + D + H N D+ Sbjct: 671 DNETSDPMDVEIKQLLETNSLVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNFDS 730 Query: 427 LAALLK-THGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------S 478 L +L+ G+H+ + +L + + L R AE + Sbjct: 731 LQDILRVCKGMHLKCDTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCSGTFA 790 Query: 479 TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD------EITVQMA 532 H+GL Y +TSPIR+Y D++ HR L A I ET EI + Sbjct: 791 PPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETINPSLSDKSRLIEICNGIN 850 Query: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP 592 R R+ +MA R ++ + LK + A ++ + + G V + G + Sbjct: 851 YRHRMAQMAGRASIEYYVGQALKGGVAEE---DAYVIKVFKNGFVVFIARFGLEGIVYTK 907 Query: 593 FLHAVRD---ELVCSQENGTVQIKGE-----TVYKVTDVIDVTIAEV-RMETRS 637 L +V + E V + ++I+ + ++ + V + V + Sbjct: 908 SLSSVLEPNVEYVEDEYKLNIEIRDQPKPQTVQIQMFQQVRVRVTTVRDEHSGK 961 >UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8Y7_9GAMM Length = 663 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 194/657 (29%), Positives = 316/657 (48%), Gaps = 30/657 (4%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 MF ++ L L QLK+ + AEG+VK T++ FGF+ + + F+ P +M KV GD Sbjct: 1 MFDNSTLSQLKQLKKDIEDSKEYAEGIVKGTQRKFGFVVLADGREIFLNPDEMTKVFPGD 60 Query: 59 RIIAVIHSEKERES---------AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDA 109 + +I +E+ + + L++ L F G+ K + PD P L Sbjct: 61 NVKILITTEQSKTKDKNAKPKVSGVLQALLQSPLKEFNGRYIIKGQGHFVEPDLPQLNRW 120 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 I A GD+ ++ RHP ++ A++ + I + + ++ Sbjct: 121 IFIPPA--ARKNAAAGDYIRCKLSRHPYPNEK-PQAKILEVIGNLEKKGIETEYVTSKFQ 177 Query: 170 LEKEAPDGVATEMLD-EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 L+ D + D + R+D+ + FVTID+AST DMDDAL+ + +L+VAI Sbjct: 178 LDPVWKDNWEESLADIDFSQRKDMQDIPFVTIDAASTRDMDDALYVSKSDNG-WRLLVAI 236 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 ADP A+I S+LDK RA + Y+PG+ IPMLP +L++DLCSL ++VRP L C++ + Sbjct: 237 ADPGAFIISNSELDKQIAQRAISTYMPGYAIPMLPAKLANDLCSLAPDQVRPALICQIDI 296 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE--AIAEQVRLLAQICQR 346 +A G I + A + SKAKL YD VS +L+ D ++ + L ++ Sbjct: 297 NATGDIVSH-NIVEAVMSSKAKLSYDDVSRFLDQRDDTITSADCSNHGHVLTQLKELSDA 355 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + LV +RPD R +L G++ I + + A+++VEE MI AN C ++L Sbjct: 356 LLINRKENHLVIPNRPDLRLVLNANGKMDRIELQNKNSASQVVEECMILANRCVTQIL-- 413 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGF-LD 465 I+ H GF P + L + L + +V DG+ + + +D F L Sbjct: 414 -DDDAIFVSHPGFRPERVADVCKLAEEQ-LSLTDIDVTQPDGYRHIMKSIDDDALDFPLR 471 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD 525 + + R S A +S + PHFG+GL +Y T+TSPIRKY D++ HR++K ++G TR D Sbjct: 472 AVLSRLLSRARLSNKRLPHFGMGLSSYTTFTSPIRKYTDLLVHRIIKEKLRGLPPTRCSD 531 Query: 526 EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGA 585 E + +R+ +R A + WL +F++ G + F + I+ G VR+ +N Sbjct: 532 EQLEAIQQRQDNSRQARSQMEQWLKCQFIQPLVGQN--FIGRVSQINSNGFTVRIDENLI 589 Query: 586 IAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 F+ L ++ I++ + EV + RSI Sbjct: 590 EGFVETRILPDK----YSFDPMRLRLKSKTLTIELDQAIEIIVKEVDCDQRSIRFTL 642 >UniRef50_Q0CT74 Mitotic control protein dis3 n=35 Tax=Saccharomyceta RepID=Q0CT74_ASPTN Length = 1034 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 124/757 (16%), Positives = 241/757 (31%), Gaps = 148/757 (19%) Query: 19 TPRAEGVVKATEKGF--GFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKE----- 69 +GV + + G + V + + + + GD ++ + + + Sbjct: 272 GTLHQGVFNVSPYNYLEGSVSVAAFDKPLIILGRENSNRAISGDVVVIEVLPKDQWKAPS 331 Query: 70 ------------------------------------------------RESAEPEELVEP 81 + +A+ +V+ Sbjct: 332 TKIVEEEAVTKNDNPESEDTETVVTERERKALQEEVKKAHGKNSEGKPQPTAKVVGVVKR 391 Query: 82 FLTRFVGKVQ-----------GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVA 130 ++VG V + + ++P + R G + Sbjct: 392 NWRQYVGHVDSGSTGAQGTSGRRQQTVFVLPMDKRVPKI----RVRTRQAADLLGQRILV 447 Query: 131 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLDE---- 185 + + R + + + L ++++ + P V + E Sbjct: 448 TIDAW-DRDSRYPTGHFIRSLGELETKGAETEALLLEYDVQYKPFPKAVLDCLPPEGHDW 506 Query: 186 ----------GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 R DL L +ID +D+DDAL A+ LP+ ++ V IAD + ++ Sbjct: 507 RVPASKDNVGWKGRRDLRDLLICSIDPPGCQDIDDALHARPLPNGNFEVGVHIADVSHFV 566 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 + +D A +R T YL I MLP L DLCSL+ R + ++ + + Sbjct: 567 KPNNAMDLEASLRGTTVYLVDKRIDMLPHLLGTDLCSLKPYVERYAFSVLWEMTPNAEVV 626 Query: 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHA 355 + +F + I S+ Y+Q +++ + + E +R L + + + R + Sbjct: 627 -SADFTKSVIRSREAFSYEQAQKRIDDPSQK----DELTESMRTLLRFSKILRQKRMDAG 681 Query: 356 LVFKDRPDYRFILGEK--GEVL-DIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FG 411 + P+ R G+ L D+ + N +VEE M+ ANI A + Sbjct: 682 ALNLASPEVRIEADNDEVGDPLTDVKTKAMLETNSLVEEFMLHANITVASKIYSTFSQTA 741 Query: 412 IYNVHMGFDPANADALAALL-KTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIR 469 + H P N + L L K + +D L D + E + + Sbjct: 742 LLRRHATPPPQNFEELTNQLSKKRNMRLDVSSSGALADSLDRCVDEANPFFNTLVRILAT 801 Query: 470 RFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---- 519 R + AE H+GL Y +TSPIR+Y D++ HR L + I E Sbjct: 802 RCMTSAEYFCAGAHGESEFRHYGLASPIYTHFTSPIRRYADLLVHRQLASAIGYEGEDGR 861 Query: 520 -------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK--------AGTDTRF 564 ++I + R R + A R ++ + LK + Sbjct: 862 APVEGVMTRNRLEDICRNINYRHRNAQFAGRASIEYYVGQALKARGEKVSADGVDGGIEE 921 Query: 565 AAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD------------------ELVCSQE 606 ++ + G+ V + G + D + + Sbjct: 922 EGYVMRVFENGVVVFVPRFGIEGVVRLEDFVLPGDSALKSVEERRELVIRRESDFDNEEY 981 Query: 607 NGTVQIKGET------VYKVTDVIDVTIAEVRMETRS 637 V KG+T ++ + V ++ V+ E+ Sbjct: 982 TLHVSDKGQTDKSRGLTVELFQKVKVNVSSVKEESGR 1018 >UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PF93_USTMA Length = 1423 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 116/561 (20%), Positives = 200/561 (35%), Gaps = 40/561 (7%) Query: 90 VQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD------WAVAEMRRHPLKGDRSF 143 V+ + + P + + +EG VA ++R P+ F Sbjct: 742 VKPRPKIIWFRPTDKRVPLIAIPADQAPEDFWAEEGQESFNSRLFVACIKRWPITSLHPF 801 Query: 144 YAELTQYITFGDDHFVPWWVTLAR----------HNLEKEAPDGVATEMLDEGLVREDLT 193 L + I + L K P E R D Sbjct: 802 -GALVEEIGVIGNVEAETQALLKDTLSSATEAFTEGALKCLPPLPWKIPEKEYKTRRDFR 860 Query: 194 ALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNY 253 + TID + +D+DDA+ L + ++ V IAD + ++ GS LD+ A+ R + Y Sbjct: 861 SHRVFTIDPETAKDLDDAVHVVRLDNGNFEVGVHIADVSHFVKLGSSLDREARKRGTSVY 920 Query: 254 LPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVY 313 L IPMLP LS++LCSL N R + T++ D + + F + I+S AKL Y Sbjct: 921 LVQRAIPMLPPTLSEELCSLVPNVERLAFSAVFTMNKDAQVISSW-FGKSIIKSCAKLAY 979 Query: 314 DQVSDWLENTGDWQPESE-----AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL 368 +E + + E I + + +L Q+ Q+ R + D F L Sbjct: 980 ADAQKVIEGGQLSKEKLEAHRPKEIGDDILILHQLAQKMRARRFKTGALRIDNVKLSFKL 1039 Query: 369 GEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD-KLGFGIYNVHMGFDPANADAL 427 E G D A+R++EE M+ AN+ A+ + + H D Sbjct: 1040 DENGLPTDASVYCSYDAHRLIEEFMLQANMAVAQQIAAGLPELALLRRHEKPLDRRLDGF 1099 Query: 428 AALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEP 481 K+ G +D L L + D L + + + A+ Sbjct: 1100 LRRAKSMGYDIDTSSGGALHRS--LAKIKDDSARQALQALVTKSMMQAKYFCTGMVDIAK 1157 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT----RPQDEITVQMAERRRL 537 H+ L + Y +TSPIR+Y D++ HR L+AV+ + +I Q ++ Sbjct: 1158 YHHYALNVPLYTHFTSPIRRYADLMVHRQLEAVLVEQDKFGVDREAMAKIAQQCNVKKDA 1217 Query: 538 NRMAERDVGDWLYARFLKD---KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 +MA+ + D + G R +A ++ + V + + G + + Sbjct: 1218 AKMAQEQSAHLFLCLLIHDLTMRYGPVVR-SATVMGVLDAAFDVIVPEFGIEKRVHVDQM 1276 Query: 595 HAVRDELVCSQENGTVQIKGE 615 ++ K Sbjct: 1277 PIENHTYDEQTNALSIYWKDN 1297 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 4/56 (7%) Query: 15 LHSQTPRAEGVVKATEKG--FGFLEVDA-QKSYFIPP-PQMKKVMHGDRIIAVIHS 66 L + GV++ ++ ++ + FI + + GD + + Sbjct: 577 LLAHGKIVVGVLRINKRNRSDAYVTTEVLDSDIFISGSKDRNRALEGDLVAVELLD 632 >UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosaccharomyces pombe RepID=DIS3L_SCHPO Length = 927 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 128/730 (17%), Positives = 228/730 (31%), Gaps = 110/730 (15%) Query: 9 AQLKQQLHSQTPRAEGVVKA-TEKGFGFLEVDAQKSYFIPPP-QMKKVMHGDRIIAVI-- 64 A +K+ L S +G ++ F ++ +++ P + H D +I Sbjct: 183 ATVKKGLKS-GTLFKGTLRILENHRSAFACMEDIPDFYVDGPIARNRAFHNDVVIVEPVM 241 Query: 65 ---------------------------------------------HSEKERESAEPEELV 79 R A + Sbjct: 242 NNDSPTEKSNFLQNGVEKVKIKDHDDELGGAMEHLERLEIKSVASFKGDSRTRARVVAIE 301 Query: 80 EPFL-TRFVGKVQ-------------GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFK-- 123 + ++ VG ++ K+ +P L + Sbjct: 302 KRAEISKIVGILRAPGWSLKNVEYVSKKSSYAIFIPKDKRLPFITIHKNDLSDLSGENWI 361 Query: 124 ------EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APD 176 E+ R + R L + + D L + + D Sbjct: 362 ENILKHHDQLFSVEITRWSI-YSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSD 420 Query: 177 GVATEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 V + +E R DL +TID + D+DDA+ +AL + ++ V I Sbjct: 421 EVLNCLPPDDWIISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHI 480 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD T ++ S LDK A RA T YL IPMLP L + LCSL N R + L Sbjct: 481 ADVTHFVKPDSALDKEAASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKL 540 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ---------PESEAIAEQVRL 339 ++G F I++ A+L Y + +E + + + Sbjct: 541 DSNGKEIGKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSILT 600 Query: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANIC 399 L +I ++ + R V + + +F L E G + AN ++EE M+ AN Sbjct: 601 LCEISRKLRKDRFAKGAVEINSTELKFQLDEYGMPNKCEVYEQTDANHLIEEFMLLANRS 660 Query: 400 AARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVD-AEEVLTLDGFCKLRRELD 457 A + + H + LK+ D + +LR + Sbjct: 661 VAEHISKNFSNNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRSTFN 720 Query: 458 AQPTGFLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRL 510 + ++ R + AE H+ L Y +TSPIR+Y D+I HRL Sbjct: 721 EELVELFENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRL 780 Query: 511 LKAVIKGETATRPQDE---ITVQMAERRRLNRMAERDVGDWLY----ARFLKDKAGTDTR 563 L+ +K + + + E++ + + D A + K Sbjct: 781 LERSLKNTSPGIDKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDKKSMP 840 Query: 564 FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG---TVQIKGETVYKV 620 A IS + V + + G + ++ +V ++ T+ + + Sbjct: 841 VQAFATRISGNSIDVYISEYGISNRVDLSSDDRIKSFIVAPDDSSVKITLFDDSQKTIAL 900 Query: 621 TDVIDVTIAE 630 TD V + Sbjct: 901 TDRFQVYLYS 910 >UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8GZL3_CAUCN Length = 760 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 156/605 (25%), Positives = 253/605 (41%), Gaps = 27/605 (4%) Query: 57 GDRIIAVIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 GDR++ E A+ + + + +G ++ + + P K+++ Sbjct: 128 GDRLLVRFERLETGEFEAKLIKKLGQSAHKILGVIRKHRREVRVEPVDRKSKESLVLDP- 186 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + H+FKEGD +A++ H + ++ + + +D + + H + Sbjct: 187 -SVAHDFKEGDLVLAQVGTHGGRYGPKP-GKVLEVVGTENDPRAASLIAIHSHGIPTGFS 244 Query: 176 DGVA----TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVA 227 + T + REDL L FVTID D DDA++A D + VA Sbjct: 245 EAAEAEAKTAVEPTLAGREDLRDLPFVTIDPVDARDHDDAVYAHPDEDETNKGGFVVWVA 304 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD A++ GS LD+ A+ + + Y P PMLP LS+ LCSLR +E R LA RM Sbjct: 305 IADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLRESENRATLAVRMV 364 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 G + + F + S AKL Y+Q ++ D + ++ L + Sbjct: 365 FDKSGRKKGH-RFVRGLMRSAAKLSYEQAQAAIDGQPD-DKAGPLLDPILKPLWDAYRTM 422 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + + + + R I+ + GE+ I A++++EE M+ AN+CAA L K Sbjct: 423 KIGRDARSPLAIESDERRIII-KGGEITSITKRASLEAHKLIEEMMVQANVCAAESLEAK 481 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDS 466 IY VH LA L+T + E F KL E P ++ Sbjct: 482 RSPLIYRVHDTPSLEKVQNLADFLQTLEIRWSKGEAPQTARFNKLLEETRESPNAAIINE 541 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE 526 + R Q A S + HFGL L YA +TSPIR+Y D+I HR L + T + Sbjct: 542 VVLRTQMQAHYSADNIGHFGLNLAKYAHFTSPIRRYADLIVHRGLIRALGLGTDGLTDQD 601 Query: 527 ITVQ------MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 I + R AERD D A FL D+ G F I ++R G+ ++L Sbjct: 602 IAQIKDTAEVITHAERRAMAAERDATDRYIAAFLADRVG--ATFEGRITGVTRFGLFIKL 659 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 D GA +P L ++ V + + V + + + ++V + E T ++ Sbjct: 660 ADTGADGLVPVSSLG--QEFFVHDDKMHALVGERTGKRWPLGLSVEVKLVEATPVTGGLL 717 Query: 640 ARPVA 644 ++ Sbjct: 718 FEMLS 722 >UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5N0_SCHJY Length = 969 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 128/715 (17%), Positives = 240/715 (33%), Gaps = 106/715 (14%) Query: 16 HSQTPRAEGVVKATEKGF--GFLEVD--AQKSYFIPPPQMKKVMHGDRIIAVIHSEKER- 70 +G+V F G + V + + + + + GD + I + E Sbjct: 259 IKNGEIHKGIVNINPYNFLEGTVSVLGYDKPVIILGRSNLNRSVQGDLVAIEILPQSEWK 318 Query: 71 -----------------------------------------ESAEPEELVEPFLTRFVGK 89 +A +++ +VG Sbjct: 319 TETSEIASDENDEEQVEEPVAQDESAFQAENEKEVARKHILPTARVVGILKRNWRPYVGH 378 Query: 90 VQG---------KNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGD 140 V + + P + R G V + + Sbjct: 379 VDMASVANRTGSSQQSVLLTPMDRRVPKIRF----RTRQISRLLGQRIVVSVDNWDI-DS 433 Query: 141 RSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLDE-------------- 185 R + + + L ++++ P V + E Sbjct: 434 RYPEGHFVRALGEMETKEAETEALLLEYDVQYRPFPKSVLDCLPAEGHEWRVPQDKSDPL 493 Query: 186 GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAA 245 R D L +ID +D+DDAL A+ LP+ ++ V IAD T ++ + +D A Sbjct: 494 WHKRADFRELLVCSIDPPGCQDIDDALHARPLPNGNYEVGVHIADVTHFVKPSTAMDAEA 553 Query: 246 KIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATI 305 R T YL I MLP L DLCSLR R +C + + + N+ F + I Sbjct: 554 SSRGTTVYLVDKRIDMLPMLLGTDLCSLRPRIERFAFSCIWEMDENANVV-NVSFTKSVI 612 Query: 306 ESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYR 365 SK Y + +++ P + E +R+L ++ ++ + R ++ + P+ + Sbjct: 613 SSKEAFSYAEAQARIDDKKAQDP----LTEGMRILLRLSKKLKQRRLDNGALNLASPEVK 668 Query: 366 FILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPAN 423 + + + +DI + N +VEE M+ ANI A+ + + + H +N Sbjct: 669 VQMDNETSDPMDIEIKQLLETNSLVEEFMLLANISVAQKIYETFPQTAVLRRHAAPPASN 728 Query: 424 ADALAALLK-THGLHVDAEEVLTLD-GFCKLRRELDAQPTGFLDSRIRRFQSFAEI---- 477 +AL +L + + + L + D L R AE Sbjct: 729 FEALQDILHVCKDMQLKCDSSKALAHSLDECSDNADPYFNTLLRILTTRCMLSAEYFCSG 788 Query: 478 --STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD------EITV 529 + H+GL Y +TSPIR+Y D++ HR L A I ET +I Sbjct: 789 TFAYPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAASIDYETLHPSLQNKQKLVDICN 848 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + R R+ +MA R ++ + LK G +TR A ++ + + G V + G + Sbjct: 849 GINYRHRMAQMAGRASVEYYVGQALK---GRETREEAHVIKVFKNGFVVFIAKFGLEGIV 905 Query: 590 PAPFLHAVRDELVCSQENGTVQIK------GETVYKVTDVIDVTIAEV-RMETRS 637 L + + + + + ++ + V++ + + Sbjct: 906 YTRTLSTPEPVVEFDEAQYALNVSIKAPKQHKIRIQMFQKVLVSVGAIRDEHSGK 960 >UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam n=2 Tax=Synechococcus RepID=Q2JH83_SYNJB Length = 766 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 136/700 (19%), Positives = 254/700 (36%), Gaps = 76/700 (10%) Query: 12 KQQLHSQTPRAEGVVKATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSEKE 69 + + G ++ + KGF F D + +I + +GD+++A + + Sbjct: 65 RYRRKPDESLVVGRLRCSSKGFCFAIRDEPGVEDVYIHGSNLSGAWNGDQVLARVTKDGN 124 Query: 70 R---ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 R E +VE + VG+++ +VP L + G E EG Sbjct: 125 RRRSPEGEVVAVVERANSALVGRLKQTEQGFRVVPLDDRLLFELALT--EGSPVELAEGR 182 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---- 182 A E+ R+PL GD + + + G + + + +++L +E P V Sbjct: 183 VAYVEVNRYPL-GDLPPTGTIRKILGDGPEASIDADLVCCKYDLPQEFPAPVLEAAAALP 241 Query: 183 ----LDEGLVREDLTALDFVTIDS-----ASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + R DL +T++ + + A+ + +D L + IAD Sbjct: 242 KKLSRSDQKGRRDLRDWFCITLEPLDLQHPHGLEPNVAVSLQRQENDHWLLGIHIADVAH 301 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 W+ L++ A+ R T YL +P+ P E+ + L L + R + +TL +G Sbjct: 302 WLDPDHPLEQEAQQRTATVYLDTMVLPLFPPEVHNRLA-LLPQQERLAYSLLVTLDPEG- 359 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE--AIAEQVRLLAQICQRRGEWR 351 + N E + + ++S+A L Y QV L T D P+ E + ++ L ++ Q R Sbjct: 360 VVQNFEIYPSLVQSRAHLSYGQVQALLATTADLGPDEEVPELMALLQNLLRLSQILRAKR 419 Query: 352 HNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 H D ++ R A+ ++ E ++ AN LR Sbjct: 420 HQAGGFDLPLLDLLTPHSADESGYGPLLISDRLGAHALMTEILLLANQILGHHLRQLGIP 479 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEV--LTLDGFCKL------RRELDAQPTG 462 + V + L L ++ ++ +TL + ++ L + + Sbjct: 480 SLARVQPAPAAEALQSFLRLANAMKLDLNLQDPAVVTLADWQRICARITAPDVLASGASP 539 Query: 463 FLDSRIRRFQSFAEISTEP----GPHFGLGL-EAYATWTSPIRKYGDMINHRLLKAVIKG 517 L +++ E +P HFGLGL E YAT+T+P+R+Y D++N R L + Sbjct: 540 ALVAQMLATLPPVEYRLQPLEEQLGHFGLGLKEPYATFTAPLRRYADLLNLRALHLALSK 599 Query: 518 ETATRP----------------------------------QDEITVQMAERRRLNRMAER 543 R ++ E R+ + AER Sbjct: 600 GRERRSSRSKTVVDLHGPSGYGQIDWQVLPPKVQEEWQAFLQAQLPKIQEGYRIRQQAER 659 Query: 544 DVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVC 603 ++ + F++ G F I+ + G V++ A + L E Sbjct: 660 ELMGLKRSEFMQKHLGE--VFPGLIIGVQNYGFFVQVDPILAEGLVRVSTLKNDWYEYRS 717 Query: 604 SQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 Q V K +++ D ++V I V + I + Sbjct: 718 RQ-QALVGRKSRRQFRLGDRVEVQIKNVDYYRQQIDLAVI 756 >UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q28VI9_JANSC Length = 778 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 162/611 (26%), Positives = 249/611 (40%), Gaps = 34/611 (5%) Query: 57 GDRIIAVIHS------EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAI 110 GDRI+A + + E + +A+ + + +G + + I P Sbjct: 125 GDRILAKLFAVEGSDAEDHQYTAKLIRKIGTNPRKILGIFRKGAEGGVITPISKGSDKEW 184 Query: 111 PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL 170 RA G H K+G+ E+ P + A +T + + + H + Sbjct: 185 QVRA--GDTHGAKDGELVEGELAG-PKARMGAPRARITTRVGDPGAARAVSLIAIHEHGI 241 Query: 171 EKEAPDGVATEMLDEGL----VREDLTALDFVTIDSASTEDMDDALFAKALPD----DKL 222 P+ V E REDL L +TID A D DDA +A A D Sbjct: 242 PDSFPNKVVAEADAAKPAGLTGREDLRDLPLITIDPADARDHDDACYAHADEDPGNKGGH 301 Query: 223 QLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVL 282 + VAIAD ++ S LD+ A+ R + Y P +PMLP LS DLCSL R V+ Sbjct: 302 VIWVAIADVAHYVTPDSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRAVI 361 Query: 283 ACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ 342 A RM + A G + F + S A L Y++ E T + I +R L Sbjct: 362 AVRMVIDARGEKIGHT-FHRGLMTSVASLSYEEAQAAQEGTLSERTA-PLIEGSIRPLFA 419 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 R + D P+ R L + G V + + R A+R++EE M+ AN+ AA Sbjct: 420 AYDALKIARAKRQPLELDLPERRIELDDAGNVTSVAFKDRLDAHRLIEEFMVLANVAAAE 479 Query: 403 VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG 462 L K ++ VH P +AL + + GL + +VL L + + Sbjct: 480 TLIAKRTPLLFRVHEEPSPEKLEALREVAASAGLTLAKGQVLQTRHLNALLKAAGEDTSE 539 Query: 463 FLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV-------- 514 + R A + E HFGL L++YA +TSPIR+Y D+I HR L A Sbjct: 540 LISISTLRSMQQAYYNPENFGHFGLALKSYAHFTSPIRRYADLIVHRALIAAHGWGPDAK 599 Query: 515 IKGETAT--RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDIS 572 I G + ++ ++ R + +AERD D A +L D+ G + F I I+ Sbjct: 600 IDGLSPDEIERLEDTAKLISGTERRSMVAERDTSDRYLAAYLSDRVGAE--FGGRISGIA 657 Query: 573 RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVTIAEV 631 R G+ V+L + GA +P L ++ E + T+ + D + V +AE Sbjct: 658 RFGVFVKLDETGADGLLPMRALG--QEYFHFDAEAQTLMGADTGTMISIGDRVLVKLAEA 715 Query: 632 RMETRSIIARP 642 T +I Sbjct: 716 VPVTGGLILEL 726 >UniRef50_A7AWK8 RNB-like domain containing protein n=1 Tax=Babesia bovis RepID=A7AWK8_BABBO Length = 951 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 135/707 (19%), Positives = 232/707 (32%), Gaps = 98/707 (13%) Query: 13 QQLHSQTPRAEGVVKATEKGF--GFLEVDAQKSYFIPP-PQMKKVMHGDRIIAVIHSEK- 68 Q GV+ F G++ + Y + + + +HGD + I ++ Sbjct: 267 QDGIDSGRYHRGVLHMYPGSFQNGYVSC-GEDEYKVCGTYNLNRAIHGDAVCIEIVTDGM 325 Query: 69 ---------------------------------------ERESAEPEELVEPFLTRFVGK 89 ++ +++ + G Sbjct: 326 DVVVPDSGDDAAVPEDIVAEDSEDIKLLDVDKTDKPLECLKKECRVVGILKRNWREYCGT 385 Query: 90 VQGKNDRL-----------AIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 + ++ + VP + E V + + Sbjct: 386 LMAVDEAIDMVGHSHMVQRIFVPVDARIPYICIDTRKSSEL----ENKRIVVVIDSW-DR 440 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHN-LEKEAPDGVATEML--------DEGLVR 189 R + I +D V L H + +E P E+ ++ +R Sbjct: 441 FSRKPSGHWVEIIGDVEDLETESAVILREHEVITREFPPKAYMELPPADWKPGAEDIKLR 500 Query: 190 EDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRA 249 +D ++D +D+DDAL L + +++ V IAD T ++ GS +DK A R Sbjct: 501 KDFRKNLVFSVDPPGCKDIDDALGFSVLDNGNIEVSVHIADVTHFVKAGSFIDKEASKRC 560 Query: 250 FTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKA 309 T YL MLP L+ +LCSL NE R + + I D +F+ I S Sbjct: 561 TTVYLVDRRTDMLPSLLTTNLCSLVPNEDRLCFSVVWQFDRNNEIVD-TQFYKGIIRSSR 619 Query: 310 KLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG 369 Y D ++ G S+ I E ++ L I + R V + P+ +F Sbjct: 620 AFTYKDAQDLIDAGG-----SDNITEALKGLDNIAKILRAKRFESGAVELESPEVKFEYE 674 Query: 370 EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-GIYNVHMGFDPANADALA 428 +V + NR+VEE M+ AN+ A + ++ + H L Sbjct: 675 LT-DVRKMQKYVLYDTNRMVEEFMLLANVSVATKIFERFPTSALLRRHPPPVDERLKVLQ 733 Query: 429 ALLKTHGLHVDAEEVLTLD-GFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEP 481 L HG+ + L+ +L + D + L R S A Sbjct: 734 RSLSQHGIEFEFGNSRDLNLSLKRLVQSGDPRLGSALRIMTTRCMSQAVYCHSGEAGVTS 793 Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP-QDEITVQM---AERRRL 537 H+GL E Y +TSPIR+Y D+I HR+L A + E E++ Q +R R Sbjct: 794 FKHYGLSSELYTHFTSPIRRYADVIVHRMLAAALDIEAMDTSFYQELSSQCEVLNKRHRN 853 Query: 538 NRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 R+ FLK K + A ++ S + V + G A Sbjct: 854 ATWCGRESSRLFAYLFLKQK--GEVTATATVIGTSEKRICVIAHELGIEATARV------ 905 Query: 598 RDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR-SIIARPV 643 D + + + D + V ++ R +I A + Sbjct: 906 -DISEFDAQTQRATLACGKHVNLFDHVTVKLSAENKHYRYNIKAELI 951 >UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID=B0T0I6_CAUSK Length = 777 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 153/596 (25%), Positives = 245/596 (41%), Gaps = 30/596 (5%) Query: 67 EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 E A + + + +G ++ + P K+++ + K+GD Sbjct: 150 ESGETEARLIKRLGQSAHKVLGVIRKVRRETRVEPVDRKSKESLLLNEQEA--KDLKDGD 207 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---- 182 +A++ + ++ + + DD + + H + + E Sbjct: 208 LVLAQVGT-SSGRYGPKFGKVLEVVGNEDDPRAASLIAIHSHGIPTGFSEDAEAEAHAAK 266 Query: 183 LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVAIADPTAWIAEG 238 R+DL L FVTID D DDA++A PD + VAIAD A++ G Sbjct: 267 PPTLEGRDDLRDLPFVTIDPVDARDHDDAVYAHPDPDAGNVGGWIVWVAIADVAAYVRPG 326 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S LD+ A+ + + Y P PMLP LS+ LCSLR E R LA RM DG + + Sbjct: 327 SALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLREGENRATLAVRMVFDNDGR-KKSH 385 Query: 299 EFFAATIESKAKLVYDQVSDWLE-----NTGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 +F + S AKL Y+Q ++ + D + +R L + G+ R Sbjct: 386 KFVRGLMRSAAKLSYEQAQAAIDGIAPPDGQDGDKAGPLLDPILRPLWAAFRLMGKGRAQ 445 Query: 354 HALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIY 413 + + + + R I+ + GE+ I A++++EE MI AN+CAA L K IY Sbjct: 446 RSPLGIESDERRIII-KDGEIQSITRRASLEAHKLIEEMMIQANVCAAESLEAKRTPLIY 504 Query: 414 NVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQ 472 VH +L L+T + E T F KL + P ++ + R Q Sbjct: 505 RVHDTPSQEKVMSLVEFLQTIEVKWSKGEAPTTARFNKLLDDTRESPHAAIINEVVLRTQ 564 Query: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEI----- 527 A S++ HFGL L YA +TSPIR+Y D+I HR L +K +I Sbjct: 565 MQAHYSSDNLGHFGLNLARYAHFTSPIRRYADLIVHRALIRALKLGDDGLTDQDISQIKD 624 Query: 528 -TVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + R AERD D A FL D+ G F+ I ++R G+ V+L + GA Sbjct: 625 TAEVITHAERRAMAAERDATDRYIAAFLSDRVG--ATFSGRITGVTRFGLFVKLDETGAD 682 Query: 587 AFIPAPFLHAVRDELVCSQE-NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 +P L + V + V + + + ++V + E T ++ Sbjct: 683 GLVPVSTLG--EEYFVHDDRMHALVGERTGKRFPLGLAVEVKLREATPVTGGLLFE 736 >UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NYF6_PHYIN Length = 1079 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 133/632 (21%), Positives = 220/632 (34%), Gaps = 77/632 (12%) Query: 66 SEKERESAEPEELVEPFLTRFVGKVQGKNDRL--------AIVPDHPLLKDAIPCRAARG 117 S+ + + +++ +F ++ D + +VP + + Sbjct: 406 SQHAKPAGRVVGIIQRNWRKFCCSLEAPRDGVTLNASGSCLVVPVDRKVPKI----KIQT 461 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE-KEAPD 176 E + + P + + + D V L H++ + D Sbjct: 462 RQQEALMDKRVLVAIDSWPA-YSKFPLGHYVRTLGVIGDKETETTVLLLEHDIPCDQFSD 520 Query: 177 GVATEMLDEG--------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 V + E R DL L +ID + +D+DDAL AK LP+ LQ+ V I Sbjct: 521 EVMRCLPAEDWKITPENASGRRDLRDLPVCSIDPPNCKDIDDALHAKLLPNGNLQVGVHI 580 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD T ++A GS LD+ A R + YL + MLP L+ LCSL E + L Sbjct: 581 ADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDVEDHFAFSVLWEL 640 Query: 289 SADGT---IEDNIEFFAATIESKAKLVYDQVSDWLENTG-------------DWQPESEA 332 G +++F + I S A L Y Q ++L++ + ES+ Sbjct: 641 QLVGQSDVQVVDVQFCKSLIRSVASLSYQQAQEFLDDPEAGGVYGQDSTLKKKKKGESDE 700 Query: 333 IAEQ-------VRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKG-EVLDIVAEPRRI 384 E+ ++ L I R R + P+ RF+L + LD+ R Sbjct: 701 QFERRQLLGSGIKTLNTIATRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQMYTLRD 760 Query: 385 ANRIVEEAMIAANICAARVLRDKLGFG-IYNVHMGFDPANADALAALLKTHGLHVDAEEV 443 N +VEE M+ ANI A+ + + H D L + K G+ + + Sbjct: 761 TNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVELHVDTS 820 Query: 444 LTLDGFCKLR------------RELDAQPTGFLDSRIRRFQSFAEI------STEPGPHF 485 L + + L R A + H+ Sbjct: 821 KQLQDSLDAADKEAAGSKRKHGDKANPYFNKLLRIMTTRCMMPASYFSSGEVAPPEFHHY 880 Query: 486 GLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD------EITVQMAERRRLNR 539 GL Y +TSPIR+Y D++ HRLL A I + EI+ Q+ R + Sbjct: 881 GLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAPLPSYLENKSHLHEISDQLNRRHHAAQ 940 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 +A R + + TR A I + G+ V L G I D Sbjct: 941 LAGRASVTLHTVLYFQQY---PTRTDAVITKVKNNGVGVLLPRFGIEGMIFLCGKDEQDD 997 Query: 600 ELVCSQE---NGTVQIKGETVYKVTDVIDVTI 628 + V + + ++ +V D + V + Sbjct: 998 QDVVKFDGARHTLTLVQKSRKLQVFDRVRVKV 1029 >UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_BARGA Length = 758 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 155/610 (25%), Positives = 260/610 (42%), Gaps = 36/610 (5%) Query: 57 GDRIIAVIHSEKERES------AEPEELVEPFLTRFVGKVQG-KNDRLAIVPDHPLLKDA 109 GD I+ + K ES ++ V+ +N++ + P + Sbjct: 129 GDHILVKVFRNKNSESSSPLYMGRIIRKIDVSPKSAFAVVRKFENNQWRLDPIDRKTNEL 188 Query: 110 IPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN 169 I + + GD E+++ G A++ + + + Sbjct: 189 IV---EMSPEMKIEIGDLVEVEIKK--NTGYGLKSAKIKNVLGHIKSEKTLSMIAILSKG 243 Query: 170 LEKEAPDGVATEML----DEGLVREDLTALDFVTIDSASTEDMDDALFA----KALPDDK 221 + P+ V ++ RED L F+TID +D DDA++A +D Sbjct: 244 IPYIFPESVLEQVKHIKAANMDNREDWRQLPFITIDPPDAKDHDDAVYATKDKDPANNDG 303 Query: 222 LQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPV 281 +IVAIAD + +I GS LDK A R + Y P +PMLP LS DLCSLR + RP Sbjct: 304 WIIIVAIADVSYYIKTGSALDKEALKRGNSVYFPDTVVPMLPERLSHDLCSLREGKERPA 363 Query: 282 LACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLA 341 LA RM A+G + F I +AKL Y +V +E + + ++ L Sbjct: 364 LAVRMIFDANGNKRKH-SFHRTMIRVRAKLSYQEVQLAIEGNINEKTA-ALFESILQPLW 421 Query: 342 QICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 + R+ + + + + IL + G + D+V+E + A+R++EE MI ANI A+ Sbjct: 422 EAYTCLKAARNRRQPLELEIAEKKIILDQNGCIKDVVSETQLEAHRLIEEFMIQANIAAS 481 Query: 402 RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP- 460 L+ IY +H A + L + L++ G+ + LT + ++ P Sbjct: 482 ETLKQHHQPLIYRIHEKPSLAKQEILRSFLQSLGIPLSRGSELTSARLNSILAKVTNTPQ 541 Query: 461 TGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK---- 516 ++ I R QS AE + + HFGL L Y +TSPIR+Y D+I HR L +K Sbjct: 542 KELINQVILRSQSQAEYNPKNIGHFGLNLHNYTHFTSPIRRYADLIIHRALIKTLKLGND 601 Query: 517 --GETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 +T + EI Q++ R MAER+ D L A +L +K G F I +++ Sbjct: 602 QLTDTQEQNLAEIATQISLYERRAMMAERETIDRLVAHYLTNKIG--RIFTGRISGVTKA 659 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQIKGETVYKVTDVIDVTIAEVR 632 G+ + L F+ L +++ E + + Y+++DV++V + V+ Sbjct: 660 GLFISLDKLNTDGFVHISTL---KNDYYHFDEAQHVLIGQRSHKGYQLSDVVEVKLITVQ 716 Query: 633 METRSIIARP 642 ++ Sbjct: 717 PFAGALSFEL 726 >UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB22_MYCGA Length = 707 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 145/649 (22%), Positives = 262/649 (40%), Gaps = 37/649 (5%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDR 59 +N ++ + + G + G GF++++ ++ Y++ + ++ D Sbjct: 60 LANNKVVLGYQNSAPDLSKIMVGRLAIGTNGNGFIKLENEELSKYYVHNTNLNNALNNDL 119 Query: 60 IIAVIHS------EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCR 113 + + + + A +++E TR+VG + D ++PD P L I Sbjct: 120 VEFAPLTVQNDWYKHDLTDACILKVLERARTRYVGTYEDTGDEYLVLPDDPKL---IYKV 176 Query: 114 AARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE 173 E KE D + E+ A L + I +D + H +E Sbjct: 177 VLDRHYLELKEHDRILFEIIE---IKQGVIRAALVKKIGSKEDLGIDIDAIAYNHLIEPT 233 Query: 174 APDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLI 225 + E + +R+DL L F+TID AS D+DDA++ K + DD L Sbjct: 234 FSQEIINEAKSLKYELDDHQKEIRKDLRDLSFLTIDPASALDLDDAIYVKKIDDDSYNLK 293 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 VAIAD ++ +D+ A+ +A + YL IPMLP ELS+DLCSL + V+ Sbjct: 294 VAIADVCHYVKFDGPMDRGARTKATSVYLANKVIPMLPEELSNDLCSLNPGVDKFVIVGD 353 Query: 286 MTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQ 345 + + G I + EF+ A I S + Y++V+++ T D + +I + + + + Sbjct: 354 LMIDGTGKIMSH-EFYPAIINSHKRFSYEEVNEYFSATNDLKDVDPSIRQMLDEARVLAK 412 Query: 346 RRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLR 405 + + D + L ++ E ++I+ +P A ++E+ M+AAN Sbjct: 413 ILRRMKIKRGYLQFDVDETSIELDDRFEPINILKKPHGEAQEMIEDFMVAANEAVCLFAS 472 Query: 406 DKLGFGIYNVHMGFDPANADALAALLKTHGLHV--DAEEVLTLDGFCKLRRELDAQPTGF 463 IY VH ++ A +T + D + + D L D + Sbjct: 473 KYNLDFIYRVHPKPAVHKLNSFANWARTLEFEIFGDLNSIKSTDIQKWLTNNADHKQIKL 532 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523 ++ + R + A S E HF L + Y +TSPIR+Y D I HR+L + A Sbjct: 533 INKLLLRSMNKAYYSVENTRHFSLASKHYTHFTSPIRRYADNIVHRILWMFVFDPQAYTD 592 Query: 524 QD---------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 E + ++ + ERDV +LY +++ + G + I I+ Sbjct: 593 LQRNELKSHLVEWCDLINKQELVAVDCERDVNAFLYVKYMSNFLG-NWYHNVTINAITNF 651 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDV 623 GM V L DNG + ++ + + + Y++ D Sbjct: 652 GMFVEL-DNGIEGLVRLNNINGDYYRYDPNTD-SLIGRNTHKKYQIGDT 698 >UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis RepID=A2FUQ4_TRIVA Length = 863 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 134/669 (20%), Positives = 234/669 (34%), Gaps = 55/669 (8%) Query: 13 QQLHSQTPRAEGVVKATEKGF--GFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE--- 67 Q+L+ + G A ++ G L D + + + + GD+I + + E Sbjct: 210 QKLYKEGKVTIGYFSAMQRQHDQGELRNDKETILLNDAKSVNRALDGDKIAVITNPESQW 269 Query: 68 -KERESAEPEELVEPFLTRFVGKVQGKN------DRLAIVPDHPLLKDAIPCRAARGLNH 120 + + ++ G V L +VP L R Sbjct: 270 VGGYPTGKVVSILSRKSRVICGTVLPPKVQTNDWQSLLVVPQQENLPKI----RIRSRQV 325 Query: 121 EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVA 179 + G + + + I + V L + + + D V Sbjct: 326 QELIGMRVHVAIDSWAI-NSKYPSGHYISTIGQAGNLQAESEVILMTNEIPHDAFSDAVL 384 Query: 180 TEML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 + +E R DL +ID D+DDAL K + ++ ++ V IAD Sbjct: 385 NCLPPKDFQPTPEEVKRRMDLRDRCVCSIDPPGCTDIDDALHYKDIDEETCEIGVHIADV 444 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ EG+ +D A+ R T YL I MLP LS+DLCS+R R + ++ Sbjct: 445 SFFVREGTAIDLEARDRGTTVYLVEKRIHMLPSLLSEDLCSIRGGIERLAFSVVAIMNKK 504 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWR 351 +++F + I+S+A L Y + + +E+ D +A+ +R L + + + R Sbjct: 505 TAETIDVKFGKSIIKSRAALSYGRAQEIVEDQNDQS----ELAKGIRGLLALSKIMNKKR 560 Query: 352 HNHALVFKDRPDYRFILGEKG-EVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 + + P F L + E L N +VEE M+ ANI A+ + + Sbjct: 561 MDDGALTLSSPQLHFTLDSETAEPLSGELYQHLEVNSLVEEFMLYANIEVAKKIYETFKQ 620 Query: 411 -GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 + H A D L LK G+ ++ + +L E + Sbjct: 621 SAMLRRHESPIAARFDFLNRALKRFGVQLNPDTNKSLVETLDGVGEKVKDLDNIVRIMTT 680 Query: 470 RFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR- 522 R FA+ S E H+GL + Y +TSPIR+Y D+I HR L A I + AT Sbjct: 681 RCMQFAKYFAAGTQSYENFRHYGLAMPIYTHFTSPIRRYADLIVHRQLAAAIGYDKATDM 740 Query: 523 -----PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 + + R ++ + A R L+ G +++ I Sbjct: 741 LASKLMMQAVAENLNFRHKMAQDAGRSSSQLFIMEMLRRTPGKIE--EGKVIKIKPTVFV 798 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVT--IAEVRMET 635 + L G + E E K + D + V + + M Sbjct: 799 ILLEQYGVEGHVHVD------GEKWIYNETEESLEKDGKRICIFDKVRVRVNVTPINMHG 852 Query: 636 R-SIIARPV 643 R + + Sbjct: 853 RSRLDLELI 861 >UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J794_MYCCR Length = 696 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 143/655 (21%), Positives = 265/655 (40%), Gaps = 33/655 (5%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLE----VDAQKSYFIPPPQMKKVMHGDRIIAV 63 L + G+ ++ + FGF+E ++ + F+P + GD + Sbjct: 51 LPDGRYHCPVFLESKVGIYRSKQATFGFVEDKDNPQSENNIFVPAKFSANSLEGDEVRVN 110 Query: 64 IHSEKERES---AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG-LN 119 I+ + + +++ L +GK+ L P + L + R + Sbjct: 111 IYKDSLKPEQKYGVITKILHRNLKFLIGKIVENGTFLDFEPIN--LNTKVLFRWQNPSMT 168 Query: 120 HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 K GD+ ++ + + L Q I +HF+ + + + + V Sbjct: 169 SSLKSGDFVKVKIVDYQKRI---LKISLIQKIGHESEHFLNVKIPIIDSGVSTIFNEEVI 225 Query: 180 TEMLDEG-------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 E R DL +TID T+D DDA+ + + L V IAD + Sbjct: 226 QESKQIPQEIKSIDPDRIDLRNEVVITIDGDDTKDFDDAISIETKEN-NYILKVHIADVS 284 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ E S LD AK R + YLP IPMLP LS+ +CSL N R + + +G Sbjct: 285 YYVTEDSALDLEAKARGTSIYLPHIVIPMLPESLSNGICSLNPNVDRYTITMEALIDKNG 344 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 +++ + + I S +L Y QV+++ +N + ++ ++ Q +++ Sbjct: 345 QNL-SVKIYPSVIRSYKRLTYHQVNEFFDNK--LSFGDPKLENLLKNALKLGQILRKYKE 401 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 N V + + + IL E+G I + R ++ I+E+ M+ AN ++ L D + Sbjct: 402 NQGYVDLEIDESKIILDEQGYTERIEIKERGLSENIIEDFMVRANENVSKYLADHNFPNL 461 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT-GFLDSRIRRF 471 Y VH D L ++K GL + + F ++ + F+ I R Sbjct: 462 YRVHNKPDSQRILQLNQIIKNLGLEIQIPYNVDSKSFADFVNQIKNKQNDNFIKIAILRT 521 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--KGETATRPQDEITV 529 A S HFGL + Y+ +TSPIR+Y D+I HR+++ I K T + + + Sbjct: 522 MQKAIYSDVNEGHFGLASKFYSHFTSPIRRYPDLILHRIIRHFIFNKNTDITHFNNILAI 581 Query: 530 QMAER---RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAI 586 + + + + ER + A ++ G F A+I I + G V + + Sbjct: 582 EASSTTELEQKAFVLERKIVGIKKAEYINKHIGKS--FNAQINSILKFGFFVEI-EGIFD 638 Query: 587 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 A + L +++ E+G + +K+ +++VTI EV + A+ Sbjct: 639 ALVGVKSLPDNDEDVYNVSEDGFSISNSKFEFKLGQIVNVTITEVDTWNGKVSAK 693 >UniRef50_A7S1B6 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7S1B6_NEMVE Length = 766 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 127/714 (17%), Positives = 241/714 (33%), Gaps = 109/714 (15%) Query: 17 SQTPRAEGVVKATEKGF--GFLEVDAQK-SYFIPPP-QMKKVMHGDRIIAVIHSEKERE- 71 + +G ++ +++ F ++ V QK ++ + + GD + I + + Sbjct: 39 KRGELLKGALRISKRNFEMAWVSVAGQKRDVYLEGVLARNRALDGDIVALNISPRNKWKL 98 Query: 72 ------------------------------------------------SAEPEELVEPFL 83 +A ++E Sbjct: 99 MKHEYDAHGASHEGNKTPSKGGTTPHTPESSKNKQRKNEEIPDAYLQQTAHVVYIIEKKH 158 Query: 84 TRFV-GKVQGKN------DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD----WAVAEM 132 TR G ++ P L A L + D V + Sbjct: 159 TRAASGNLKPFQYNQGDVPDGLFSPSDSRLPRMRIPHAKCPLGFFDRPQDFASTLFVGRI 218 Query: 133 RRHPLK---GDRSFYAELTQYITFGDDHFVPWWVTLARHNL-EKEAPDGVATEMLDEG-- 186 P + E+++ + + + + PD + E Sbjct: 219 TEWPENAPMDNFFATGEISRSLGEAGEIEPETQGIFFEYGIDPGPFPDEALDCLPKETPW 278 Query: 187 -------LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 R D TID + D+DDAL K L D +++ V IAD + ++ G+ Sbjct: 279 SIPETEFAHRRDFRDECVFTIDPLTARDLDDALHCKRLSDGLIEVGVHIADVSFFVKTGT 338 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 LD A+ RA + Y+ +PMLPR L ++LCSL +E R + ++ G I+ + + Sbjct: 339 PLDDIAQERATSTYMVQTVVPMLPRRLCEELCSLNPDEDRLTFSVVWIMTDQGEIKSDWK 398 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESE-----------AIAEQVRLLAQICQRRG 348 I S+ K+ Y+ + ++ +SE I ++V LLA+I ++ Sbjct: 399 -GRGIIRSRVKMAYEHAQEMIDKPNKKWSDSELPPIAEGTDVSEIVKRVNLLAKIARQLR 457 Query: 349 EWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + + D+ +F L ++ G + +R +N+++EE M+ AN+ A + Sbjct: 458 RNRFENGALRLDQVKLQFDLDKETGMPIGYHVYQQRESNKLIEEFMLLANMTVAHHIYKA 517 Query: 408 LGF-GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 466 + H + L L + G+ +A ++ AQ L Sbjct: 518 FPDMALLRRHPKPHEKQMEDLLELCRNLGIKYNANSSKSIQVSLAQFPSGSAQHE-ILVQ 576 Query: 467 RIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA 520 + A E H+ L + Y +TSPIR+Y D+I HRLL A ++ Sbjct: 577 LTMKPMKNALYFCAGTVEEEEYGHYALSVPLYTHFTSPIRRYADVIVHRLLAASLELAEP 636 Query: 521 TR----PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGM 576 D I + + + A + +A F+++ + ++ I Sbjct: 637 LDKDAVDVDSIAGHCNDCKLAAKTAGELSSELFFAIFVRECGPLEE--DGYVLGIMDMSF 694 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENG-----TVQIKGETVYKVTDVID 625 V + G I F V+ + ++ T+ T K + Sbjct: 695 DVFVPALGVTKRIYCKFCPGVKRYVPYDRKEQVQPEITLVWATGTEKKPGKDVK 748 >UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE7_RHORT Length = 842 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 161/603 (26%), Positives = 250/603 (41%), Gaps = 27/603 (4%) Query: 57 GDRIIAVIHSEKE-RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAA 115 GDRI+A + + R A + +R +G + D L + P + +D Sbjct: 173 GDRILARLTRIGDARYDARTIRRLAAAPSRLLGVLALARDGLRLRPTNRRDRDEYLVAPE 232 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + G+ AE+ P + A++ + + + V + H++ + P Sbjct: 233 --DAGGAEPGELVEAELL--PSRRLGLRRAKVIERLGGREGPRSISLVVVHSHDIPVDFP 288 Query: 176 DGVATEMLD----EGLVREDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVA 227 E + REDL A+ VTID D DDA+FA+ D + +VA Sbjct: 289 PEALAEAEAAVGVDLRGREDLRAVPLVTIDGEDARDFDDAVFAEPDDDPANPGGWRALVA 348 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD ++ G+ LDKAA+ R + Y P +PMLP LS+ CSLR NE R LA M Sbjct: 349 IADVAHYVRIGAALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNEDRGCLAVWMI 408 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347 A+G + F + S A+L Y QV + D + L + Q Sbjct: 409 FDAEGNKLRH-RFLRGLMRSAARLTYTQVQAARDGHADDLTA-PLQERVIAPLYGVFQAL 466 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + D P+ + +L + GEV I R +++++EE MIAAN+ AA L +K Sbjct: 467 LGARSRRGTLELDLPERKVVLDDGGEVARIEPRLRFDSHKLIEELMIAANVSAAETLEEK 526 Query: 408 LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDS 466 +Y VH P AL L++ + + F + + P ++ Sbjct: 527 RRPCMYRVHDQPAPDKLVALGEFLESLDIPFHKGSINRSGQFNGVLKAARGTPHEHMVNE 586 Query: 467 RIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI----KGETATR 522 + R Q+ AE S + HFGL L YA +TSPIR+Y D++ HR L A + G Sbjct: 587 VVLRSQAQAEYSPDNIGHFGLALRRYAHFTSPIRRYADLLVHRALIAGLGLGDDGLRPGA 646 Query: 523 PQD--EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 +D E + R AERD + FL K G FA I ++R G+ V L Sbjct: 647 EEDFVETAAHITATERRAAQAERDAVNRYTVSFLAAKVG--ATFAGRINGVTRAGLFVTL 704 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRMETRSII 639 D GA IP L D V + + + + + ++V + E + ++ Sbjct: 705 EDTGADGLIPIGSLP--NDYYVHDDAHHCLRGQRDGLEFHLGAPVEVLLREANPVSGGLV 762 Query: 640 ARP 642 Sbjct: 763 FGL 765 >UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIE9_CELJU Length = 664 Score = 484 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 209/660 (31%), Positives = 310/660 (46%), Gaps = 26/660 (3%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M ++ L LA LK L +Q A+G ++ T K FGF+ +D + F+ P Q+ +V+ D Sbjct: 1 MLNNDALQQLASLKSSLVAQKDIAQGTIRTTTKRFGFILLDDGREAFLDPEQILRVLPED 60 Query: 59 RIIAVIHSE-KERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARG 117 R A I + K + A+ +L+ L FVG+ K + PD + Sbjct: 61 RAEAEITTNAKGQYEAKLTKLLHSNLQEFVGRYVSKGTNFFVEPDLVHFNRWLFVPPQ-- 118 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDG 177 EGD ++ RHP D + + + D+ + +AR L E P Sbjct: 119 DRKGLTEGDLVHCQVARHPFHCDGKAQVHILKRLGNVDEPGIESRYAIARFQLPCEWPPA 178 Query: 178 VATEMLD-------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 + EDLT L FVTIDS ST DMDDA+ +A +L AIAD Sbjct: 179 AQNQASSIHWSPLVFENNEEDLTQLPFVTIDSESTRDMDDAVCIQATEHG-WELFSAIAD 237 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 PT I S L++AA+ RA T+Y+ G + MLP +LS D SL A + RP L CR+ + Sbjct: 238 PTKHIDFDSPLEQAARERASTHYILGNTLTMLPVDLSQDTYSLVAEQKRPALVCRIHIRN 297 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 DG I ++ F A I S+ KL Y V D+L + S+ + Q+ +L R ++ Sbjct: 298 DGHI-ESFAFSEAVIRSRQKLSYQGVYDFLTTAAETN-LSDELRTQLTMLRDFALARSQY 355 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R H L+ +++PDY+FIL E+ ++ + R IA+RIVEEAM+A N+CA + G+ Sbjct: 356 RQQHNLLMEEKPDYQFILNEQKKIERVEKRDRTIAHRIVEEAMLATNLCAGELFSQHPGY 415 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-----TGFLD 465 GI++ H+GF P + AL++ + ++ L F L REL P L Sbjct: 416 GIFSGHIGFRPERVNDAVALIQEDRPDLSPGDLSQLKDFLNLFRELRQNPGQHPANAALH 475 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETA--TRP 523 S ++R +S EP PHFGLG AYA TSPIR+Y D NH +K +++GE Sbjct: 476 SLLQRQLQAGALSQEPVPHFGLGFNAYAMVTSPIRRYNDFFNHLGIKRLLRGEPPLALDN 535 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 E ++ + L R A R WL +++ G+ I ++ G+ VRL D Sbjct: 536 LVEFVERLQHKLNLGRQACRFTETWLACQYMNQHIGS--VHTGNIALVNSTGIGVRLDDW 593 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 G FIP + D YK+ +V+ V I EV + R + V Sbjct: 594 GMEGFIPL--VPRDSDIKAQFDSRRLSLNVNGNTYKLDEVVQVVIDEVDVSKRRVALSLV 651 >UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23DE7_TETTH Length = 946 Score = 484 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 142/729 (19%), Positives = 245/729 (33%), Gaps = 120/729 (16%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPP----------PQ 50 +FQ++ L +L ++ + +G +K + FIP P Sbjct: 220 LFQEHLTLNELSNKVKA-GDLFQGKLKIDRN------DINDGTVFIPKYDFEIKIIGQPN 272 Query: 51 MKKVMHGDRIIAVIHSEKER---------------------------------------- 70 + + +HGD I + E E Sbjct: 273 LNRALHGDLIAIELLPENEWISSNYMGDNEDEEEDFKNVHEAVKTNNSNKQLEEKYLNVV 332 Query: 71 ---------ESAEPEELVEPFLTRFVGKVQGKNDRL----------AIVPDHPLLKDAIP 111 + +++ F G+V + L +P Sbjct: 333 EKIKKLNLNPTGRVVGVIKRIQRYFCGEVTPEAINLPNLPSGIELREFIPADGRFPHFYL 392 Query: 112 CRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE 171 R N +G K + I D V L HN+E Sbjct: 393 ----RTTNGSQLQGKKIQIGFDNW-SKSSKYPLGHFKMLIGDSGDTKAEGDVILLEHNVE 447 Query: 172 KE-APDGVATEMLD----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220 V + E R DL ++ +ID +D+DDAL +LP+ Sbjct: 448 YRAFSKQVLDCLPPQDDKWQIPQSEIKKRVDLRGINVCSIDPPGCKDIDDALHCISLPNG 507 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 ++ V IAD + ++ + +DK A+ R T YL MLP+ L++ LCSL+ + R Sbjct: 508 NFEVGVHIADVSYFVRPDTAIDKEAQNRCTTVYLVDRRTDMLPKLLTETLCSLKDDGDRL 567 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL 340 + + D I + + + I S A L Y + +++ D + + + +R L Sbjct: 568 AFSVVWVMDKDANIIE-TRYHKSIIRSVASLNYGKAQSMIDDVND----NSELTKSIRNL 622 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANIC 399 + ++ + R + + +F ++ +D+ N ++EE M+ N+ Sbjct: 623 NMLAKKLKQKRIENGALSLASTQVKFTFDDETHNPVDVQFYQMYETNSLIEEFMLLGNVA 682 Query: 400 AARVLRDKLGF-GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELD 457 A + I H P L+ +L+ G ++D L D K+ R D Sbjct: 683 VAEKIVSHFPSISILRQHSQPKPKQIKELSQILQKIGFNLDYSSNRNLADSLDKVNRPND 742 Query: 458 AQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL 511 + R + A H+GL Y +TSPIR+Y D++ HRLL Sbjct: 743 HFFNKLVRIMTTRSMNEATYFCTADADYPEFYHYGLAAPLYTHFTSPIRRYADVLVHRLL 802 Query: 512 KAVIKGETATR------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA 565 A I E +I +M R R+ R A R D+ F KDK + Sbjct: 803 AAAIDIEAIPAYMSNKLKMAKICEKMNMRNRMARFASRSSSDYNTYLFFKDKQIEEV--- 859 Query: 566 AEIVDISRGGMRVRLVDNGAIAFIPAP-----FLHAVRDELVCSQENGTVQIKGETVYKV 620 A + IS+ G V + G I + EL +Q + +K+ Sbjct: 860 AMVSSISKTGATVVVPRYGLEGQIKFSEKDLKENEKLLQELKQNQSLIIDFVVNGNRHKL 919 Query: 621 TDVIDVTIA 629 D + V ++ Sbjct: 920 FDYLKVRVS 928 >UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F4 Length = 1349 Score = 484 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 133/671 (19%), Positives = 257/671 (38%), Gaps = 64/671 (9%) Query: 15 LHSQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPP-PQMKKVMHGDRIIAVIHSEK---- 68 L Q +G ++ + F+++ D K + + ++GD + + ++ Sbjct: 636 LLEQGKLLKGSIQVFSRLDSFVKIGDGVKDLHVQGLESRNRALNGDIVAVQLLPDQEEKT 695 Query: 69 ERESAEPEELVEPFLTRFV-GKVQG----KNDRLAIVPDHPLLKDAIPCRAARGLNHEFK 123 ++ AE +++E R V G+V+ + + P + + + Sbjct: 696 RQKKAEVVKIIEEKHPRIVPGQVKPYYGHRYGFAIMFPTDSSFPIIMLPLKNFPKDFIDR 755 Query: 124 EGD----WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL-EKEAPDGV 178 D +A++ + +L ++ + ++ + + Sbjct: 756 PLDFEKSLFLAKITNW-DQNLYYACGKLVSFLGESGSVEAETEAIIKKNLIYDTPFSKKC 814 Query: 179 ATEML---------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 + +E R DL TID ++ D+DDAL K + DD ++ V IA Sbjct: 815 LKTLPQKNTWCIPSEELNKRSDLRKECIFTIDPSTARDLDDALSCKKIADDLYEVGVHIA 874 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D + ++ E S LDK A++RA + YL IPMLP LS+DLCSL R + + Sbjct: 875 DVSYFVKENSALDKVAQLRATSVYLTQKVIPMLPSILSEDLCSLNPGVDRLAYSVIFNIK 934 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLEN-------TGDWQPES-----EAIAEQV 337 +DGTI + +F I S+ KL Y Q +EN T D+ E I + + Sbjct: 935 SDGTIINE-KFVRTVICSQVKLTYCQAQQLIENQLTDYLITNDFPKIYGGFTLENIKDSL 993 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKG-EVLDIVAEPRRIANRIVEEAMIAA 396 L QI + + RHN + + P+ F L E+ + + + + +N+++EE M+ A Sbjct: 994 YTLFQISKNLRKQRHNAGAISYNLPEIIFNLNEEKDKPIGLSLYKYKDSNKLIEEFMLLA 1053 Query: 397 NICAARVLRD-KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEE----VLTLDGFCK 451 N+ AR + + + H + + LA L + + L D +L+ Sbjct: 1054 NMSVARKIYEAHPKKAVLRRHPPPNQIMMEDLAKLFQLYELDFDLGSNQSINKSLEKLSG 1113 Query: 452 LRRELDAQPTGFLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGD 504 L EL + + + A + + H+GL + Y +TSPIR+Y D Sbjct: 1114 LENELKTFLEPAIVLMLTKPFLLASYFCSGAVTNEQDFHHYGLNVPLYTHFTSPIRRYPD 1173 Query: 505 MINHRLLKAVIKGE----TATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT 560 ++ HR L A + + + IT Q ++ A + + + FL Sbjct: 1174 ILVHRCLTAALDSKFAVNKSVEDIKRITDQCNIKKYNADKASEESSELFFCLFLMQSGSL 1233 Query: 561 DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG-----TVQIKGE 615 + +V + + + G + + L + ++ + Sbjct: 1234 QEK--GVVVAVLNNRVDILCTRLGFVKRVYYQDLP-CKYTYELDEKMRPKLSLKWTKDDK 1290 Query: 616 TVYKVTDVIDV 626 V+++ + I + Sbjct: 1291 KVFELDEDIPI 1301 >UniRef50_Q8TF46-4 Isoform 4 of DIS3-like exonuclease 1 n=13 Tax=Tetrapoda RepID=Q8TF46-4 Length = 971 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 124/742 (16%), Positives = 226/742 (30%), Gaps = 119/742 (16%) Query: 16 HSQTPRAEGVVKATEKGF---GFLEVDAQK--------SYFIPP-PQMKKVMHGDRIIAV 63 +G++ + F+ + I + +HGD ++ Sbjct: 155 IKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDILIHGMKARNRSIHGDVVVVE 214 Query: 64 IHSE---KER----------------------ESAEPEELVEPFLTRFVGKVQGKN---- 94 + + K R + +++ +V K Sbjct: 215 LLPKNEWKGRTVALCENDCDDKASGESPSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQS 274 Query: 95 -----DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQ 149 ++ + P + +F+ V + + Sbjct: 275 QGKNAQKILVTPWDYRIPKIRISTQQAETLQDFR----VVVRIDSWEST-SVYPNGHFVR 329 Query: 150 YITFGDDHFVPWWVTLARHNL-------------EKEAPDGVATEMLDEGLVREDLT-AL 195 + D L +++ P+ +E R+DL + Sbjct: 330 VLGRIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSH 389 Query: 196 DFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLP 255 +ID ED+DD L + L + L+L V IAD T ++A S +D A+ RA T YL Sbjct: 390 LVFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLA 449 Query: 256 GFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQ 315 MLP LS DLCSL R ++ L + + I S KL Y+ Sbjct: 450 DRRYDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEA 509 Query: 316 VSDWLENT---------------GDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 + L+ Q + E + + L I + R + + Sbjct: 510 AQELLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELE 569 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-GIYNVHMGF 419 + L +K + D++ + + V E MI AN A+ + + + H Sbjct: 570 GVEVCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPP 629 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCK-LRRELDAQPTGFLDSRIRRFQSFAEI- 477 L K G +D TL D L S + S A Sbjct: 630 HQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYF 689 Query: 478 -----STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---------ATRP 523 + E H+GL L+ Y +TSPIR+Y D++ HRLL A I + + + Sbjct: 690 STGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKGNLFSNKD 749 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDK---AGTDTRFAAEIVDISRGGMRVRL 580 +E+ + R + + +++ + + KDK I I G+ + + Sbjct: 750 LEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLLFI 809 Query: 581 VDNGA---------IAFIPAPFLHAVRDEL-------VCSQENGTVQIKGETVYKVTDVI 624 G + E ++ T + + D + Sbjct: 810 PRFGIKGAAYLKNKDGLV-ISCGPDSCSEWKPGSLQRFQNKITSTTTDGESVTFHLFDHV 868 Query: 625 DVTIA--EVRMETRSIIARPVA 644 V I+ R + +I ++ Sbjct: 869 TVRISIQASRCHSDTIRLEIIS 890 >UniRef50_Q8TF46 DIS3-like exonuclease 1 n=22 Tax=Deuterostomia RepID=DI3L1_HUMAN Length = 1054 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 124/742 (16%), Positives = 226/742 (30%), Gaps = 119/742 (16%) Query: 16 HSQTPRAEGVVKATEKGF---GFLEVDAQK--------SYFIPP-PQMKKVMHGDRIIAV 63 +G++ + F+ + I + +HGD ++ Sbjct: 238 IKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDILIHGMKARNRSIHGDVVVVE 297 Query: 64 IHSE---KER----------------------ESAEPEELVEPFLTRFVGKVQGKN---- 94 + + K R + +++ +V K Sbjct: 298 LLPKNEWKGRTVALCENDCDDKASGESPSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQS 357 Query: 95 -----DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQ 149 ++ + P + +F+ V + + Sbjct: 358 QGKNAQKILVTPWDYRIPKIRISTQQAETLQDFR----VVVRIDSWEST-SVYPNGHFVR 412 Query: 150 YITFGDDHFVPWWVTLARHNL-------------EKEAPDGVATEMLDEGLVREDLT-AL 195 + D L +++ P+ +E R+DL + Sbjct: 413 VLGRIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSH 472 Query: 196 DFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLP 255 +ID ED+DD L + L + L+L V IAD T ++A S +D A+ RA T YL Sbjct: 473 LVFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLA 532 Query: 256 GFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQ 315 MLP LS DLCSL R ++ L + + I S KL Y+ Sbjct: 533 DRRYDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEA 592 Query: 316 VSDWLENT---------------GDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 + L+ Q + E + + L I + R + + Sbjct: 593 AQELLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELE 652 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-GIYNVHMGF 419 + L +K + D++ + + V E MI AN A+ + + + H Sbjct: 653 GVEVCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPP 712 Query: 420 DPANADALAALLKTHGLHVDAEEVLTLDGFCK-LRRELDAQPTGFLDSRIRRFQSFAEI- 477 L K G +D TL D L S + S A Sbjct: 713 HQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYF 772 Query: 478 -----STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET---------ATRP 523 + E H+GL L+ Y +TSPIR+Y D++ HRLL A I + + + Sbjct: 773 STGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKGNLFSNKD 832 Query: 524 QDEITVQMAERRRLNRMAERDVGDWLYARFLKDK---AGTDTRFAAEIVDISRGGMRVRL 580 +E+ + R + + +++ + + KDK I I G+ + + Sbjct: 833 LEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLLFI 892 Query: 581 VDNGA---------IAFIPAPFLHAVRDEL-------VCSQENGTVQIKGETVYKVTDVI 624 G + E ++ T + + D + Sbjct: 893 PRFGIKGAAYLKNKDGLV-ISCGPDSCSEWKPGSLQRFQNKITSTTTDGESVTFHLFDHV 951 Query: 625 DVTIA--EVRMETRSIIARPVA 644 V I+ R + +I ++ Sbjct: 952 TVRISIQASRCHSDTIRLEIIS 973 >UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID=RNR_MYCPU Length = 725 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 144/648 (22%), Positives = 269/648 (41%), Gaps = 38/648 (5%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHS---EKERES 72 ++ + +G+ K + + F F+E ++SYF+ ++ + A+++ EK+++ Sbjct: 58 VNEIKKIQGIFKQSNRNFAFIETADEQSYFVAKAHFNGAINSFEVEAIVYESPFEKDKKY 117 Query: 73 AEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEM 132 A +++++ +G ++ N + N + +E D + + Sbjct: 118 AVVKKILKNTHPEIIGFIKISNGIKYFNAFEESFRSYKFFV---DQNIDVEEDDVILVVV 174 Query: 133 RRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM--------LD 184 + D+ Y + ++ +F + L + + P+ V E Sbjct: 175 EKIV---DQKIYVNFVKKVSTLKSNFYQIDIVLEKSKTIIDFPEDVLDESALIEDHVIEK 231 Query: 185 EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKA 244 + R+DL +TID T+D DDA++ + D L V IAD ++ E S +DK Sbjct: 232 DYQNRKDLRDKLIITIDGEDTKDFDDAIYVEKNKD-HFLLSVHIADVAHYVKENSAIDKE 290 Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304 A RA + YLP IPMLP +LS+ +CSL R V++ + + G E + Sbjct: 291 ALRRATSIYLPHMVIPMLPEKLSNGICSLNPGVDRLVMSIDIFIDFQGNTI-KTELYEGI 349 Query: 305 IESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDY 364 I SK +L Y+QV+D+ N P + + + ++ + ++ + + + + Sbjct: 350 INSKHRLTYNQVNDFYNNKIKLDPN---LEKMLNDSLELSKILENYKKDEGYINLEIEES 406 Query: 365 RFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANA 424 + IL ++G+ + I R ++ ++E M+ AN A + IY VH + Sbjct: 407 KVILDKEGKTVGIKVIQRGLSEVLIENFMVRANEAVAWKMNKLKLPSIYRVHDNPSIESL 466 Query: 425 DALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT--GFLDSRIRRFQSFAEISTEPG 482 LKT G+ D ++ + F ++ F+ + R A S + Sbjct: 467 VLFEKTLKTLGIDFDTPKITSPKAFSDSFEKIKQNYQIDNFVKLMVLRTMEKAIYSDKNI 526 Query: 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAV------IKGETATRP--QDEITVQMAER 534 HFGL Y+ +TSPIR+Y D+ HRL+K + +K + +++VQ +++ Sbjct: 527 GHFGLASSYYSHFTSPIRRYPDLQLHRLIKQMVFDKSNLKEKKNHFSLILSDVSVQSSKK 586 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 ER + D A + + K G + A+IV I GM V D I L Sbjct: 587 EVEAVSIERQINDIKKAEYYESKIGKSLK--AQIVSILSFGMFVEFED-KVSGLIHISNL 643 Query: 595 HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 E E+G + +T YK+ IDV + +V + Sbjct: 644 ---LGEDFQVSEDGLLISSNKTKYKLGQEIDVVVVKVDKNLGKVDVVL 688 >UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN Length = 726 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 144/670 (21%), Positives = 260/670 (38%), Gaps = 39/670 (5%) Query: 5 NPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEV--DAQKSYFIPPPQMKKVMHGDRIIA 62 N LL + + +G++ K GF+ D + Y+I + + GD + Sbjct: 65 NQLLINYELADPVLDQKFQGILNLGNKNTGFVRPLDDDKTVYYIHFSNLAGALDGDLVEF 124 Query: 63 VIHSE---KERESAEPEELVEPFLTRFVGKVQGK----NDRLAIVPDHPLLKDAIPCRAA 115 + ++ A ++V+ + G + IV D+P P Sbjct: 125 CPLDKPQVGDKFDAAVLKIVKRSRVLYAGNFLIEYSDFGQEFRIVADNPRF-YLTPIVNK 183 Query: 116 RGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAP 175 + E + ++ + + + Q + D+ + + H++ E Sbjct: 184 ASVPAELESNTKVAFQIDEY-DPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIVFEDN 242 Query: 176 DGVA--------TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVA 227 D V E R+DLT L FVTID A+++D+DDA++ K L VA Sbjct: 243 DVVEQQAAKLQFDEKEQSKPYRKDLTELAFVTIDPATSKDLDDAIYVKRTDKG-FVLYVA 301 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNI-PMLPRELSDDLCSLRANEVRPVLACRM 286 IAD ++ S+LD A+ + + YLPG+ + PMLP LS++LCSL NE R V+ C + Sbjct: 302 IADVAYYVQRNSELDIEARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCEL 361 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 + + + E + ATI S+ + Y +V+DWLE++ + ES + E ++ + + Sbjct: 362 NFDHEARLNFS-EVYPATIVSQRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSEL 420 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 E R + + ++ + ++I A ++E M+ AN A L + Sbjct: 421 IAEQRKKKGTIDLSHSETEVVVDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAWTLTN 480 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGL---HVDAEEVLTLDGFCKLRRELDAQPTGF 463 Y VH L + + + + V + L+ D Sbjct: 481 HKVHLPYRVHPRPSKKKLQMLLENIVELKITQPNFVLDTVTSTQIAAWLKENKDNPSYDI 540 Query: 464 LDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI-------- 515 + R A P HF +G Y +TSPIR+Y D+ HRLL + Sbjct: 541 FVILLLRTLGKAFYIVNPLIHFSIGSHHYTHFTSPIRRYADLTVHRLLWMNLFTPERFTD 600 Query: 516 -KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 + E ++I + + ER D+L +L + G F I I+ Sbjct: 601 TEREQLNAELEQICETINDTEIKINGCERTANDYLTTLYLSKQVG--QTFHGFISAITSF 658 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTV-QIKGETVYKVTDVIDVTIAEVRM 633 G+ +R+ +N I + D V ++ + + V+++ D + + E+ Sbjct: 659 GIFMRMDENNFDGLIKITSIP--EDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEIDT 716 Query: 634 ETRSIIARPV 643 + I V Sbjct: 717 VQKRAILTLV 726 >UniRef50_C5KND9 Exosome complex exonuclease rrp44, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KND9_9ALVE Length = 982 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 124/742 (16%), Positives = 230/742 (30%), Gaps = 129/742 (17%) Query: 17 SQTPRAEGVVKAT----EKGFGFLEVDAQKSYFI---PPPQMKKVMHGDRIIAV------ 63 +G+++ + ++G + K + + + + GD + Sbjct: 213 QNGTLHQGILRCSVSSWQRGKVVVVSSKNKEIHLMIKGRFNINRAVDGDVVAVEEIHTPT 272 Query: 64 ----------------------------------IHSEKE--RESAEPEELVEPFLTRFV 87 E + +++ + Sbjct: 273 STSSNDDGDDDDNVAVLPTSGAEAMEERVLEEESTTPEGGIIEKEGRVVGIIKRNWREYA 332 Query: 88 GKVQG-----------------------KNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 G ++ +P +P + + + Sbjct: 333 GTLRPIQQEEEEQPQQGDKQHGGGMIGYSKIERIFIPANPRIPNIRIVTKHSNDL----D 388 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHN-LEKEAPDGVATEML 183 M + R ++ + + V L HN + ++ D V + Sbjct: 389 NMRICVVMDTW-DRTSRLPQGHWSRILGRCGERDTESSVILHEHNVITRDFSDDVMRCLP 447 Query: 184 --------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWI 235 +E R DL + +ID +D+DDAL + L + ++ V IAD T ++ Sbjct: 448 PKDFQPDEEEISRRLDLRNVTVCSIDPPGCKDIDDALSCEVLDNGNWRIGVHIADVTHFV 507 Query: 236 AEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL-----SA 290 + +DK A R T YL MLP L+ DLCSL + R + + Sbjct: 508 HPNTAIDKEAAERCTTVYLVERRTDMLPSLLTTDLCSLVGGKDRLCFSVLWEFQLNKKNG 567 Query: 291 DGTIED--NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRG 348 + + N +F A I S A L Y + +++ D + + + +R L + Sbjct: 568 NEEVLKIVNTQFHKAIINSNAALSYAEAQARIDDKND----NSDLTQSIRRLLKAAMIIR 623 Query: 349 EWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 R + + RF L + + D+ + NR+VEE M+ AN A + Sbjct: 624 RKRMAGGALELASQEVRFELDSETSDPTDVAEYTMKDTNRLVEEFMLLANTSVAEQILKH 683 Query: 408 LG-FGIYNVHMGFDPANADALAALLKTHGLH-VDAEEVLTLDGFCK--LRRELDAQPTGF 463 + H +L +LL+ G+ L ++ D Sbjct: 684 FPSNSVLRRHPPPKEQQLKSLRSLLEKQGVKGFQFGSNRELSRSLNTVCNKKDDPYFNRL 743 Query: 464 LDSRIRRFQSFAEI----STEP--GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKG 517 + R + A+ E H+GL + Y +TSPIR+Y D++ HRLL A + Sbjct: 744 VRIMTTRTMNQAQYFCTGEVENGMFSHYGLAMGLYTHFTSPIRRYADILVHRLLMASLGI 803 Query: 518 ETATRPQD------EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDI 571 + E ++ R R + A R + + A I + Sbjct: 804 RPLPPQLNDKTAVIEQCDKINFRHRNAQFAGRASAELHTYLYFNKN--GPCTADAVITRV 861 Query: 572 ---------SRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGT-VQIKGETVYKVT 621 G ++V + G + DE +C ++ V K + V Sbjct: 862 RARIGGLRRGGGSLQVVVPRYGIDGVCKLDDNNKDDDEWICDEDKMIAVNDKSKITLAVF 921 Query: 622 DVIDVTIAEVRMETRSIIARPV 643 D I V I + R + V Sbjct: 922 DHIQVKIMADNTDFR---FKTV 940 >UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuclease R n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VTQ9_9PROT Length = 830 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 170/628 (27%), Positives = 254/628 (40%), Gaps = 32/628 (5%) Query: 36 LEVDAQKSYFIPPPQMKKVMH----GDRIIAVIHS-EKERESAEPEELVEPFLTRFVGKV 90 E A S +P Q KV GDR + + + E A P + + TR +G Sbjct: 95 AEAPAGTSVVLPSTQAGKVKPPIGTGDRFLGRLTALEDFHYHAAPIKRIGRGATRTLGVY 154 Query: 91 QGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQY 150 + + P + + +EGD AE +G + Sbjct: 155 RPHRRGGHVDPVSRKAQS---LDIDSRDANNAEEGDLVWAEPLN--ARGYGPRKGRIVSI 209 Query: 151 ITFGDDHFVPWWVTLARHNLEKEAPDGVATEM-----LDEGLVREDLTALDFVTIDSAST 205 DD + LA ++ P V + EDL AL +TID Sbjct: 210 EGHVDDRTNWSLIALAEQDIPIHFPPEVVEAAEALTLPSDLSPYEDLRALPLITIDPKEA 269 Query: 206 EDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRE 265 +D DDA+FA+ + + +++VAIAD ++ GS LD+ AK R + YL +PMLP Sbjct: 270 KDHDDAVFAEPIDEG-FRIVVAIADVAQYVRPGSPLDQEAKRRGNSVYLIDRVVPMLPEA 328 Query: 266 LSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGD 325 LS+ LCSL+A E R L C + + +G FF A I L Y++ + Sbjct: 329 LSNGLCSLKAGEDRTALCCELIIGPNGG-RKRHRFFRALINCHRGLAYEEAQAAADGR-- 385 Query: 326 WQPESEAIAEQVRLLAQIC-QRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRI 384 + + + V Q R + D P+ + +L E G V IV + R Sbjct: 386 LTDRTRDLKDSVIDPLWAAWQALETARRKSPSLDLDMPERQILLAEDGAVDRIVRKQRLD 445 Query: 385 ANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVL 444 A+R++E M+ AN+CAA L IY VH D D L L + G + +VL Sbjct: 446 AHRLIEAYMVTANVCAAETLESANRALIYRVHDVPDEERIDGLRVYLSSMGYSLPKGQVL 505 Query: 445 TLDGFCKLRREL-DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYG 503 F + R D T + + R Q A STE HFGL L YA +TSPIR+Y Sbjct: 506 KPAKFNHILRAARDKDETDLVALAVLRTQMQAIYSTENLGHFGLSLRRYAHFTSPIRRYA 565 Query: 504 DMINHRLLKAVIKGETATR------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK 557 D+ HR L + + ++ ++ R AER D A FL+D+ Sbjct: 566 DLTIHRALVSARRLGPGGMRAEDEAHLADVAEHISVTERRAVAAERATQDRYLASFLEDR 625 Query: 558 AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGET 616 G D F I ++R G+ V L + GA FIP LH D +E N + + Sbjct: 626 EGND--FHGRISGVTRAGLFVTLDETGADGFIPMRSLHT--DYYQHDEERNALIGQRSGG 681 Query: 617 VYKVTDVIDVTIAEVRMETRSIIARPVA 644 Y + ++V + EV + ++ Sbjct: 682 HYHLGQRVEVRLLEVTPLQGGLRFEMLS 709 >UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY8_LEPBJ Length = 755 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 138/653 (21%), Positives = 269/653 (41%), Gaps = 38/653 (5%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIH--SE 67 + K L + + G + ++KG GF+++ + F+P ++ + GD + + + Sbjct: 112 EKKNILVNSNQKLLGTISTSKKGDGFVKLPSGMEVFVPGQYVQSAIQGDLVEVQPNAIGK 171 Query: 68 KERESAEPEELVEPFLTRFVGKVQGKNDRLAI-----VPDHPLLKDAIPCRAARGLNHEF 122 K R E +++ + V K+ + + + L E Sbjct: 172 KGRLEGEVTKILRRGRDLYRMIVIEKDPKFIFGKLLDIDGEEKEGYLLRKTILMNLQDEI 231 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWW----------VTLARHNLEK 172 + GD + ++R + Q++ F D L N+ Sbjct: 232 QLGDVLIVKLREETEHERNLYE---VQFLRFESDTKEDLDLMRMLMKYNYSILYPENIVL 288 Query: 173 EAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPT 232 P+ V +D+ R DL L +TID ++D DDA+ +++ V +AD + Sbjct: 289 NLPEEVDESTVDDWGSRVDLRNLKCITIDGEYSKDFDDAISFVE-EKSRIRFYVHVADVS 347 Query: 233 AWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADG 292 ++ G+ LD+ A RA + YL +PMLP +LS++LCSL A + R M G Sbjct: 348 YYVRLGTDLDEEAYNRATSVYLGSRVVPMLPPDLSENLCSLVAGKNRLAFTVEMEADWKG 407 Query: 293 TIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRH 352 I +++++ + I + Y++ + S + + + + R Sbjct: 408 KIT-HVKYYKSVINVAERYTYNRAESEI--------LSGDPGNWIFRMNEFAKALRARRI 458 Query: 353 NHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 412 V + + + + + V++I + R A+ ++EE M++ANI A +R K + Sbjct: 459 EDGRVDLNLKENKVVTDSEHNVVEISVQDRLQAHILIEEFMLSANIKIAESIRKKKHPTL 518 Query: 413 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRF 471 Y +H + ++L A L+ +G+ + ++ + + + +EL+ +P L + + R Sbjct: 519 YRIHEPMNEEKLESLNAFLQLNGIKILLKDS-SYEAIRAVLKELEGKPAERLFNMFLLRT 577 Query: 472 QSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE---IT 528 A S E H+GLG E Y +TSPIR+Y D++ HR+L+ ++ G+ +E + Sbjct: 578 FMQAYYSGEYLGHWGLGFEDYCHFTSPIRRYPDLVCHRVLQQILLGKKPLYGPEEVVTLG 637 Query: 529 VQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAF 588 + + + R AERD R+L+ + F+A I + V L + A Sbjct: 638 LHCSHQERKASDAERDYYKLKACRYLEKTGIKE--FSATITGCKPHLIFVDLENPSVDAC 695 Query: 589 IPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + E+ + K +Y + D I+V + V E I + Sbjct: 696 L-ISSEFTDEGEIRLETDFSFYSKKYSKIYTLGDKIEVELDRVDYEEIKIFVK 747 >UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY08_STRM9 Length = 619 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 132/638 (20%), Positives = 251/638 (39%), Gaps = 41/638 (6%) Query: 19 TPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEEL 78 E K F D + I GD +I I + ER + ++ Sbjct: 2 NKIFESKFICKNKRIAFAYTDNNEKVLIRDINFNNAFDGDTVIVEII-DNERLIGKVNKI 60 Query: 79 VEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLK 138 V+ + + G V I+ L + K GD + + Sbjct: 61 VKRQDSPYFGNVILCKRNKYII----RLNRSDLIVTTTTKKINIKHGDILSFNID-YTTL 115 Query: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD--------EGLVRE 190 + ++ L N+ K + + E+++ E R Sbjct: 116 NKDDIKVNILNNFGNINNSDNILNSLLDASNISKGFLNEIKKEVVEIRRPNVSEELKYRV 175 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 DL +TID S +D+DDA++ + + L V+IAD + ++ E SKLD A R Sbjct: 176 DLRHQKTITIDDISAKDLDDAIYLEKEEN-HYILYVSIADVSYFVKEYSKLDFEAAKRGN 234 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + YL IPMLP++LS++LCSL +E + ++ +G + ++ +FF + I+S + Sbjct: 235 SIYLAEQVIPMLPKKLSNNLCSLNPDEDKLTFTVKLKYDLNGKLIES-DFFKSIIKSHHR 293 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE 370 L Y V+ +N P + + ++ + + ++ ++ + P+ + IL E Sbjct: 294 LNYTDVNKMFDNNDKSYP-------ILWDMLELSKLLRKQKNKKGMINFNIPEIKLILDE 346 Query: 371 KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAAL 430 G++ +I ++ ++E M+AAN A L + IY VH + +L Sbjct: 347 NGDIKEISKRISGLSQELIENFMVAANEAVAEYLHWQNIPAIYRVHEAPEIDTLRSLNKK 406 Query: 431 LKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFAEISTEPGPHFGLGL 489 L G +++ + K+ + +L + + A+ E HFGL L Sbjct: 407 LNILGYNINNVMDIHPGKIAKIIDKSSNDENSYLIHKTVLQAMKRAKYMNENKGHFGLAL 466 Query: 490 EAYATWTSPIRKYGDMINHRLLKAVIKGET-----ATRPQDE---ITVQMAERRRLNRMA 541 + Y +TSPIR+Y D+I HR+L+ + + + ++E I +++ R+ Sbjct: 467 DNYLHFTSPIRRYSDLIVHRMLQFTLNNKKISTKYIDKKKEEYKLIAEHISKTERVAERL 526 Query: 542 ERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 E+D ++K + F A I I RG + ++L + I F + + Sbjct: 527 EKDSIKLKLLDYMKKHL--NEVFEARISGIIRGKIFLQLDN-----LIETVFYDNISSKY 579 Query: 602 VCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 + + + + D + + I ++ E II Sbjct: 580 IIDD--ALLIDNKGNKFNIGDKVKIKIIKLDYERIEII 615 >UniRef50_UPI000180BAF4 PREDICTED: similar to DIS3 mitotic control homolog-like 2 n=2 Tax=Ciona intestinalis RepID=UPI000180BAF4 Length = 925 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 125/682 (18%), Positives = 220/682 (32%), Gaps = 110/682 (16%) Query: 16 HSQTPRAEGVVKATEKGF--GFLEVDAQKSYFIPP-PQMKKVMHGDRIIAVIHSEKE--- 69 + +G ++ K F F+ + + ++GD + I +K+ Sbjct: 157 IATGELIKGTLRVNAKKFSHAFIADKEGHDILMDGFKDRNRALNGDVVAVRIKDKKDWII 216 Query: 70 -------------------------------------RESAEPEELVEPFLTRFV-GKVQ 91 R++ +VE + V G ++ Sbjct: 217 GVSDLAEQLGAVSVGDSKADQTSPNVSSPTVGKFNKTRKTGVVVGIVEKKSRQVVTGHLR 276 Query: 92 GKNDRLAIVPDHPLL--------KDAIPCRAARGLNHEFK---EGDWAVAEMRRHPLKGD 140 P+ + + + + K V ++ + Sbjct: 277 LDK----AKPNDKFITLETVSKNNQNLQIPREEVMKEKAKQDISNVLFVGKILKW-EPHS 331 Query: 141 RSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEMLD---------EGLVRE 190 EL Q I L H ++ E + V + E R Sbjct: 332 PLPLGELCQSIGEIGQIEPETTRILIDHEVDFSEFSNAVNQCLPSDLPWTIPQAERAKRR 391 Query: 191 DLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 D T+ +ID S D+DDAL K LP+ ++ V IAD + ++ G+ LDK A R Sbjct: 392 DFTSECIFSIDPPSARDLDDALHCKQLPNGTYEIGVHIADVSYFVHPGTALDKVASERCT 451 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 + YL IPMLPR L ++LCSL R + ++ G I F + I S AK Sbjct: 452 SVYLVQRVIPMLPRLLCEELCSLNPGTERLAFSVVWNITEQGKILSQW-FGRSVIRSCAK 510 Query: 311 LVYDQVSDWLENTGDWQPESE------------------AIAEQVRLLAQICQRRGEWRH 352 YD +++N + E I +V L ++ Q + R Sbjct: 511 FSYDHAQSFIDNPDRDFSQPESACQENEFPEITGNFSMNEIKTKVLGLFKVSQNLRKQRI 570 Query: 353 NHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK-LGF 410 ++ + D+ + L + G + +N ++EE M+ AN+ A L Sbjct: 571 DNGALRLDQVRLSYTLNSETGLPNGCYTYEYKKSNELIEEFMLLANMAVAHKLYTSIPTH 630 Query: 411 GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKL---RRELDAQPTGFLDSR 467 H + GL VDA L + EL L Sbjct: 631 AFLRSHSEPKEEMMQDFVSTCMALGLEVDASSSEALAESLRTAPGADELAKYRKQALFLL 690 Query: 468 IRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET- 519 + Q A H+ L + Y +TSPIR+Y D++ HR L AVI ++ Sbjct: 691 AIKPQQLATYICAGSVSDESKYHHYALNVPLYTHFTSPIRRYADLVVHRQLAAVIGEQSD 750 Query: 520 ------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 +T R+ + A+ D + + + ++R ++++ Sbjct: 751 EQMMNLSTDELQAQATLCNHRKSNAKQAQELSIDLFFNLLVNNFGPLESR--GMVMNVLD 808 Query: 574 GGMRVRLVDNGAIAFIPAPFLH 595 + + + G + L Sbjct: 809 RAVDILSTEYGVTKRVYLEELP 830 >UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NXM9_COPC7 Length = 1426 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 121/562 (21%), Positives = 204/562 (36%), Gaps = 39/562 (6%) Query: 92 GKNDRLAIVPDHPLLKDA-IPCRAARGL---NHEFKEGDWAVAEMRRHPLKGDRSFYAEL 147 + + P + IP A N E VA ++RHP+ + L Sbjct: 743 ERPKIVWFKPTDKRVPLIAIPTEQAPPDFVQNSEAYADKLFVACIKRHPI-SSLHPFGTL 801 Query: 148 TQYITFGDDHFVPWWVTLARHNLE-KEAPDGVATEMLD--------EGLVREDLTALDFV 198 + + D V L N +E + V + E R+DL Sbjct: 802 VEELGPIGDIEVETSALLKDCNFPTEEFSENVLKCLPPIPWTIPEHEFKTRKDLREERIF 861 Query: 199 TIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFN 258 TID + +D+DDAL KA D + V +AD + ++ + LD+ A+ RA + YL Sbjct: 862 TIDPETAKDLDDALSVKANEDGTYDIGVHVADVSFFVKPNTALDRDARKRATSVYLVQRV 921 Query: 259 IPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSD 318 +PMLP LS+ LCSL E R + T++ + + F + S AKL Y + Sbjct: 922 VPMLPPALSEQLCSLIPGEDRLAFSVIFTINKEAKVLKKW-FGKTIVRSTAKLSYRDAQN 980 Query: 319 WLENTGDWQP-----ESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGE 373 +E P + I E +++L I ++ R N+ + + RF LGE G Sbjct: 981 VIEGKNFDAPVGGNYNASDIEEDIKVLDSISKKLRAERFNNGALTLESLKLRFTLGEDGL 1040 Query: 374 VLDIVAEPRRIANRIVEEAMIAANICAARVLR-DKLGFGIYNVHMGFDPANADALAALLK 432 D + R AN ++EE M+ ANI A+ + + H + + Sbjct: 1041 PTDCGEQERLDANALIEEFMLLANIAVAQQIAVHLPEQALLRRHDSPIERRMNTFLRRAE 1100 Query: 433 THGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI------STEPGPHFG 486 G +D L D L+ + A+ H+ Sbjct: 1101 RLGYKMDISSAGAL--MKSFNAITDPTARKLLELVSFKATHRAKYFCAGMLDIAKYGHYA 1158 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGE-TATRPQD-----EITVQMAERRRLNRM 540 L + Y +TSPIR+Y D++ HR L+A ++G D ++ Q +R + Sbjct: 1159 LNVPLYTHFTSPIRRYADVLVHRQLEATLQGGNDVKFTMDRDAVAKVAQQCNIKRDSAIL 1218 Query: 541 AERDVGDWLYARFLKD---KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 AE + D + G R A+++++ V + + G + + Sbjct: 1219 AEEQSAHLFLCVLISDLATRYGPVIR-PAKVINVLDAAFDVLIPEFGIEKRVHIDQMPIE 1277 Query: 598 RDELVCSQENGTVQIKGETVYK 619 + + V Sbjct: 1278 NHVYDEHTHTLQIYWSEKDVIT 1299 Score = 44.5 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 5/56 (8%), Positives = 19/56 (33%), Gaps = 4/56 (7%) Query: 15 LHSQTPRAEGVVKATEKG--FGFLEVDAQK-SYFI-PPPQMKKVMHGDRIIAVIHS 66 L + G+++ ++ ++ + +I + + GD + + Sbjct: 570 LLAAGKLVVGILRVNKRNRSDAYVSTEVLDADIYICGSKDRNRALEGDIVAVELLD 625 >UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NB86_9BACT Length = 645 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 148/647 (22%), Positives = 263/647 (40%), Gaps = 39/647 (6%) Query: 20 PRAEGVVKATEKGFGFLEVDAQK------SYFIPPPQMKKVMHGDRIIAVIHSEK----- 68 EG + T GFGF+ + A + FIPP + + M GD + I + Sbjct: 11 DTVEGKLTVTPTGFGFVALPADEAGRHPDDIFIPPQFVGEAMDGDEVKVAILPPREDVPG 70 Query: 69 --ERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 + + +++ FVG++Q I P + + D I G K GD Sbjct: 71 DSRGPAGKIVAVLKRAREEFVGELQE---GGRIKPLNRRMPDDIEIT---GSRRGAKPGD 124 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML--- 183 W ++ S+ +T + + +A +L + E L Sbjct: 125 WVKVKLL---GSEGGSWQGAITDAMGKAGEIAADLDAVMAEFDLCPRYSEADNEEALKIV 181 Query: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD-DKLQLIVAIADPTAWIAEGSKLD 242 + RED T VT+D +D DDAL ++ + V I+D A+IA SK D Sbjct: 182 PREIEREDCTKQLTVTLDPIDAKDFDDALSIMPGEKRTEVIVGVHISDVAAFIAPKSKFD 241 Query: 243 KAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFA 302 K A+ R+F+ YLPG +PMLP L+ + SL+A +V +T+ + Sbjct: 242 KEAEKRSFSCYLPGRTLPMLPAALTARI-SLQAGQVSNAHTVFLTVERSSGKILSFRRAH 300 Query: 303 ATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN-HALVFKDR 361 I+ +L Y++V +++++ S+ + +++ L +I ++ +R + Sbjct: 301 TKIKVDHRLNYEEVQEFIDHGTAPADWSKNLQSKLKQLVEITRKMQAYRKKTEDFIDLAL 360 Query: 362 PDYRFILGE-KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 P+ R + E ++ +V++ R + +VEE M+AAN L + G+Y VH + Sbjct: 361 PEVRILCDEKTNRIVGLVSKVPRESENVVEECMLAANSAVGTQLGEISVAGLYRVHPEPE 420 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEIST 479 + A ++ + ++ + + L P + S++ R A Sbjct: 421 AEKIEEFTANMQEM-FGITPGDLSSRKACNAFLKSLPDDPKRPIILSQLLRSLPRAYYLE 479 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE--TATRPQDEITVQMAERRRL 537 +P HFGLG Y +TSPIR+Y D+I H+ L G +T ++ + + + Sbjct: 480 KPALHFGLGKGRYCHFTSPIRRYPDLIVHQQLWNYDTGARTRSTATLAKVALDCSTKEEN 539 Query: 538 NRMAERDVGDWLYARFLKDKA--GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLH 595 N A D L RFL++K G D F I ++ G+++ + + G FIP L Sbjct: 540 NDNAYFAANDRLKLRFLQEKLEAGGDLTFDGVIAKVTPAGLQLDVSELGIYGFIPNEQLK 599 Query: 596 AVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 E+ + +K + V +A + S + P Sbjct: 600 GSS----YKNEHARRREAESAEWKPGKTMRVRLASIDFVRGSAVFVP 642 >UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegleria gruberi RepID=D2UXR9_NAEGR Length = 1053 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 131/684 (19%), Positives = 237/684 (34%), Gaps = 101/684 (14%) Query: 49 PQMKKVMHGDRIIAVIHSEKER-------------------------------------- 70 M + +HGD + I + E Sbjct: 316 KHMNRSIHGDIVAVEILPKSEWSRPSSITIMDDNDIDLENNHPLTGTSESDSSEKSLTSS 375 Query: 71 ------------ESAEPEELVEPFLTRFVGKVQGKN------DRLAIVPDHPLLKDAIPC 112 + + +++ + G + +++ VP + Sbjct: 376 FYSRFVNSERLIPTGKVVGIIKRNWRSYCGSLDEDTDSEEGLNKVLFVPVDRCIPKIRIV 435 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 + + + I + V L H++ Sbjct: 436 SRQCKELM----NKRICVMIDGWSV-NSKYPDGHYISTIGEIYNTDTESEVILLEHDVPH 490 Query: 173 ---------EAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQ 223 P + R DL L+ V++D D+DDAL A LPD ++ Sbjct: 491 YKFSQSIIDCLPPKDWQPTEKDMERRRDLRHLNIVSVDPPGCTDIDDALHAIQLPDGSIE 550 Query: 224 LIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA 283 + V IAD T ++ EG+ +D A R T YL I MLP L+++LCSLR + R + Sbjct: 551 IGVHIADVTNFVKEGTAIDIEAAKRGTTVYLVDRRIEMLPSLLTNNLCSLRQHVDRLAFS 610 Query: 284 CRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQI 343 S +G I ++++ + I S+ + Y++ +++ + +A +RLL QI Sbjct: 611 VIWKFSPEGDI-KSVDYTKSLIRSRKSMTYEEAQKVIDDK----ERDDELATDLRLLMQI 665 Query: 344 CQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAAR 402 + + R+ + P +F + + D+ R N +VEE M+ ANI A+ Sbjct: 666 SKILKKKRNEAGSLTLASPAVKFSMEAESSNPTDVELYQLRETNSMVEEFMLLANIAVAK 725 Query: 403 VL-RDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE----LD 457 + ++ H +P + L +LK HG+++D L+ R D Sbjct: 726 KITKEFPMVACLRRHPPVNPKKFEPLLEMLKRHGINLDISSSKILNETLSNIRSSGLIKD 785 Query: 458 AQPTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL 511 + + R A S E H+GL + Y +TSPIR+Y D+I HRLL Sbjct: 786 KYMDTLVRIMVTRCMEQAVYFISGDCSQEEYWHYGLAVPIYTHFTSPIRRYADVIVHRLL 845 Query: 512 KAVIKGETATRPQDE------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA 565 A I T + + + +R R+++ A+R + + T R Sbjct: 846 GAAIGYYPLTEKVTDREYSRRLMNDLNKRNRMSQYAQRSSVELYTNVYFNSNPITSER-- 903 Query: 566 AEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE-NGTVQIKGET---VYKVT 621 A I + G+ V + G I + + ++E + V V Sbjct: 904 AYITQMKSNGIVVFIPRFGFEHVIFLTKDNVQYSNITFNEETDSLVFEDQNKPTITLTVF 963 Query: 622 DVIDVTI-AEVRM-ETRSIIARPV 643 + +++ I + R + V Sbjct: 964 EHVNIRIYVKTSKNYRRKLCVEVV 987 >UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma RepID=B3PMK9_MYCA5 Length = 718 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 147/654 (22%), Positives = 263/654 (40%), Gaps = 47/654 (7%) Query: 22 AEGVVKATEKGFGFLEVDA---------QKSYFIPPPQMKKVMHGDRIIAVIHSEKER-- 70 E + T K GF+++D + S F+ P Q+K V+ D + A I+S ++ Sbjct: 80 VENQISITNKRLGFIDLDNALETNNDENKCSAFVAPFQLKNVLDKDLVQAKIYSYQDENN 139 Query: 71 ---ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDW 127 +++ +G ++ K +R K K D Sbjct: 140 KTLYKGVISNVIKHNCKNIIGFIEFKENRPIFNAFDERNKANFFFINTSNFPKIIKSTDL 199 Query: 128 AVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM----- 182 + +S IT +D +A ++++ V + Sbjct: 200 VKCIILE---PNAKSVAIAFDSIITNLNDKNYVIKKIMAANDVKGGFGLEVLEKAATIPQ 256 Query: 183 ---LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 239 ++ R DLT+L VTID T+D DDA+ L + +L + IAD + ++ EG Sbjct: 257 EIIPEDYDNRVDLTSLLTVTIDGLDTKDFDDAISCSKLENGNYKLFIHIADVSHYVKEGD 316 Query: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 299 +DK A R + YLP IPMLP LS+ +CSL N +R L + L G + + Sbjct: 317 AIDKEALERGTSIYLPDKVIPMLPFALSNGICSLNPNVIRACLTLELELDNHGKNVSS-K 375 Query: 300 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 359 +A+ I+S +L Y++V+D+ + E I + +I + + V Sbjct: 376 VYASLIKSDYRLTYNEVNDFFNQKIEVPNE---INNLLSRAREISKILRAKKIKDGYVDF 432 Query: 360 DRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGF 419 + + + I+ E ++ DIV A +++E+ M+ AN A ++++ IY +H Sbjct: 433 EIEEPKIIM-EDNDIKDIVIRKDGEAEKLIEDFMVRANETIAEMMKELKIPSIYRIHDKP 491 Query: 420 DPANADALAALLKTHGL-HVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEI 477 + AL LL G+ ++ + F + ++ A + +L + R A+ Sbjct: 492 ETLKLSALQELLGFVGMKNIQVPFDGSPKSFEIMVNKIKAIKLDDYLKMALLRTMQKAQY 551 Query: 478 STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI--------KGETATRPQDEITV 529 S+ HFGL AY+ +TSPIR+Y D++ HRL++ I E + I Sbjct: 552 SSNNIGHFGLASSAYSHFTSPIRRYPDLLLHRLIRKYILNGKFDPKNYEKVKDEIEAIAQ 611 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 +E + ER V D + ++F + + F A++V I + G + + A I Sbjct: 612 MNSEAEKTAMTVERSVVDVMKSKFFEKFI--NKTFVAQLVSIEKFGAFFNIEEYQASVLI 669 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 ++ + G KV + I + E +I A+ V Sbjct: 670 RFEDDEDGLIKISSYEAKG-----KSKTLKVGSEYKIAITSIDHEKGNINAKLV 718 >UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clupeocephala RepID=UPI0001A2D29A Length = 829 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 118/578 (20%), Positives = 200/578 (34%), Gaps = 48/578 (8%) Query: 66 SEKERESAEPEELVEPFLTRFV-GKVQ--GKNDRLAIVPDHPLLKDAIPCRAARGLNHEF 122 +++ + +VE +R V G ++ P + A + Sbjct: 196 ERTTQKNGKVVFIVEKKHSRAVSGFLKFLPNKRFAMFSPVDHRVPRVNVPLADCPADFTS 255 Query: 123 KEGD----WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDG 177 + GD + + + P L + + + L + ++ E + Sbjct: 256 RPGDYENTLFICRITQWPA-DSNFAEGRLAKTLGQAGEIEPETEGILTEYGVDFSEFTEE 314 Query: 178 VATEMLDEGL---------VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAI 228 V + + R DL TID A+ D+DDAL K L D ++ V I Sbjct: 315 VLNCLPQDLPWSIPAHELSTRRDLRKECIFTIDPATARDLDDALSCKQLSDGNFEVGVHI 374 Query: 229 ADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTL 288 AD + ++ EG+ LD+ A RA + YL IPMLPR L ++LCSL R + L Sbjct: 375 ADVSYFVKEGNALDELAGQRATSVYLVQKVIPMLPRLLCEELCSLNPLTDRLTFSVIWKL 434 Query: 289 SADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE-----------AIAEQV 337 S +G I F I S KL YD ++ E I E V Sbjct: 435 SPEGKILSEW-FGRTVICSCIKLSYDHAQSMIDAPDKHFSPEELPACSPNHSIIEIQEAV 493 Query: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGE-VLDIVAEPRRIANRIVEEAMIAA 396 L I ++ R + D+ F L ++ R +N++VEE M+ A Sbjct: 494 LNLHNIAKQLRAQRFEGGALRLDQLKLSFTLDKESSMPQGCYVYQYRDSNKLVEEFMLLA 553 Query: 397 NICAARVLR-DKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE 455 N+ + + H D + GL +D L Sbjct: 554 NMAVGHQIYRSYPELALLRRHPPPQTKMVDDMQEFFDQMGLDIDFSSSGALHRSLNENLG 613 Query: 456 LDAQ---PTGFLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDM 505 D + R A + H+ L + Y +TSPIR+Y D+ Sbjct: 614 DDEYTAARKEVITHMCSRPMQMAVYFCAGALKDEKLFRHYALNVPLYTHFTSPIRRYADV 673 Query: 506 INHRLLKAVIKGET----ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTD 561 I HRLL A + + + +R+ ++ + + +A F+K+ D Sbjct: 674 IVHRLLGASLNCGPRLSVSGEEVHQQASHCNDRKTASKRVQELSSELFFAVFVKECGPLD 733 Query: 562 TRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 + A ++ + V ++ G I L +++ Sbjct: 734 S--EAMVMGVLDQSFDVLVLRYGVQKRIYCNSLEGLKE 769 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 17 SQTPRAEGVVKATEKGF--GFL-EVDAQKSYFIPP-PQMKKVMHGDRIIAVIHSEKERES 72 + +GV++ K + ++ D F+ + ++GD ++ + ++ + Sbjct: 32 KRGELIQGVLRINPKKYKEAYIPSPDGSADIFLDGISARNRALNGDVVVVKVLPLEQSQK 91 Query: 73 AEPEEL 78 L Sbjct: 92 MHVIAL 97 >UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5A6_SCHJY Length = 859 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 128/711 (18%), Positives = 241/711 (33%), Gaps = 94/711 (13%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGF-GFLEVDA-QKSYFIPPP-QMKKVMHGD 58 + L + + + +G ++ + F+ V+ ++I + + D Sbjct: 107 VYEEHLTKEAYLEGLKKGTLLKGTLRILDSFHSAFVTVEGYADDFYIDGMIARNRALDND 166 Query: 59 RIIAVIHSEK-------------------------------ERESAEPEELVEP-FLTRF 86 +I ++ +A+ + E Sbjct: 167 TVIIETLKDRAPASESVTVQGSSSSEDDLTADPALPTSVASSNPNAKVVAIAERWPRDSV 226 Query: 87 VGKVQG-------------KNDRLAIVPDHPLLKDAIPCRAARGLNHEFK--------EG 125 VG + K++ P + + + G EG Sbjct: 227 VGILHPPGWSPNTGSPRNSKSNYCIFQPQSKRMPFHLIHKNDLGELSGSNWREQITQNEG 286 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL-EKEAPDGVATEML- 183 + + R A++ + I + L + +E PD V + Sbjct: 287 VIFSVKRKTWSAT-SRYPLAKVDKRIGHLSNIEASTQAILLERMVNSREFPDEVLDCLPS 345 Query: 184 -------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236 +E R +TID + D+DDA+ D ++ V IAD + ++ Sbjct: 346 DNWCITDEERAKRRSFLDQIVLTIDPETARDLDDAVSCIDNGDGTYRISVHIADVSHFVK 405 Query: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296 + LD A+ RA T YL IPMLP L + LCSL + R + + +G Sbjct: 406 PETALDNEARSRATTVYLVQRAIPMLPTLLCERLCSLNPSVERLAFSVEWLVDRNGRELG 465 Query: 297 NIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE---------QVRLLAQICQRR 347 F + I++ +L Y + + LE + + I++ +R L I + Sbjct: 466 PRWFGKSLIKTCCRLTYTEAQNILEGKSWEEGVGKPISDGFKATDVEVSIRNLNIIAKAL 525 Query: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDK 407 + R ++ V + + +F L E+G + ANR++EE M+ AN A + + Sbjct: 526 RKARFDNGAVSVNTSELKFRLDEQGLPQKCEVYEHKDANRLIEEFMLFANRSVAEKISNH 585 Query: 408 LGF-GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLD 465 + H L G D D +LR + + T ++ Sbjct: 586 FPHVALLRRHAPPKEKQLGEFIRFLAHLGFDFDGSTSARFNDSLQRLREKFPSDITELIE 645 Query: 466 SRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518 + R AE S H+ L Y +TSPIR+Y D+I HRLL+ ++ Sbjct: 646 NMAARSLQRAEYFCTGSTDSVSEWLHYALAFSHYTHFTSPIRRYPDIIVHRLLECAVQDC 705 Query: 519 TA---TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE-----IVD 570 + T+ +EI ++ R+A+ D + +L +K + + A + Sbjct: 706 DSSLKTKQCNEIATHCNTKKENARLAQEDSNFVFLSVYL-NKYSEEHKVPAMPVRVFVTR 764 Query: 571 ISRGGMRVRLVDNGAIAFIPAPFLHAVRD-ELVCSQENGTVQIKGETVYKV 620 I + V + I ++ E+ S+E+ + K T K+ Sbjct: 765 ILDHSIDVHIPVFALTRRISFLDEPSLESFEVDDSEEHVQLTFKNGTSTKL 815 >UniRef50_A4S559 Predicted protein n=3 Tax=Mamiellales RepID=A4S559_OSTLU Length = 962 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 123/714 (17%), Positives = 232/714 (32%), Gaps = 113/714 (15%) Query: 17 SQTPRAEGVVKATEKG-F-GFLEVDA-QKSYFIPPPQ-MKKVMHGDRIIAVIHSEKER-- 70 + +G V+ + F + + + + M + + GD + I E + Sbjct: 233 ASGKLIKGGVRTSRYNPFEAHVMNEGTGEGVLLSGRAAMNRAIDGDLVAVEILPESQWIR 292 Query: 71 ---------------------------------------------------ESAEPEELV 79 + + ++ Sbjct: 293 PGGMIITGTAEEDKETSSADVDAKDDAGGLAPETADETDVAVAATKASGVVPTGKVVGII 352 Query: 80 EPFLTR--FVGKVQGKND-------------RLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 + V D R+ VP + E Sbjct: 353 RRNWRERGYAASVDMGRDGKGPTAAGGGFASRVLCVPSDRRFPKI----RIQTRQLEGLL 408 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEML 183 V + P + + L ++++ V + Sbjct: 409 DQRIVVVIDDWPA-DSMYPEGHYVKSLGLIGSVDAETQALLLENDVDDRPFAPAVYACVP 467 Query: 184 D----------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 REDL L ++D +D+DDAL A+ + D+++++ V IAD T+ Sbjct: 468 ALPWKVTDDHLAEPGREDLRDLLVCSVDPPGCKDIDDALSARDIDDERIEIGVHIADVTS 527 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ + +D+ A R T YL + MLP L+ D+CSL + R + + Sbjct: 528 FLFPDTAMDEEAARRGTTTYLVQRRLDMLPGALTTDICSLVGGQERLAFSAFWIVQKSTM 587 Query: 294 IEDNI---EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 + D F + I+S A L Y+Q +++ ++ + +R L + ++ + Sbjct: 588 LPDETVKPRFTKSVIKSAAALTYEQAQTRIDDASL----NDDLTLSLRRLRDVARQLRKR 643 Query: 351 RHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARV-LRDKL 408 R + + P+ RF + ++ + LD+ R N++VEE M+ AN+ A L+ Sbjct: 644 RMANGALTLASPEVRFEMDQQSSDPLDVGMYVTRETNQMVEEMMLLANVSTAERILQAYP 703 Query: 409 GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSR 467 + H + + L K G+ +D + TL R DA L + Sbjct: 704 AAAMLRRHPIPEQKMFEPLLKAAKACGVDIDTQSNRTLAASLDAAVRPEDAYFNTLLRLQ 763 Query: 468 IRRFQSFAEIST------EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 R S A + H+GL + Y +TSPIR+Y D+I HRLL A I Sbjct: 764 ATRCMSQAVYCSSGQYAGPERMHYGLAMPLYTHFTSPIRRYADVIVHRLLSAAIGLCPRH 823 Query: 522 RPQDE------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGG 575 + ++ + R R ++ A R + F + + A + + G Sbjct: 824 KSLEDSDHVKSVADVCNVRHRNSQQAGRASVELHTLVFFRKR---KIVADARVFKVRANG 880 Query: 576 MRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA 629 + V + G + E+ +KV D + V + Sbjct: 881 LVVFVPKFGIEGPVLFVEGENSDTATCTLDEDAMTVTHKGKTWKVFDRLTVRVE 934 >UniRef50_UPI00019264F3 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F3 Length = 797 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 127/675 (18%), Positives = 232/675 (34%), Gaps = 80/675 (11%) Query: 17 SQTPRAEGVVKATEKGF--GFLEVD-AQKSYFIPP-PQMKKVMHGDRIIAVIHSE----- 67 + +GV++ K F F+ D ++ + + + GD + + + Sbjct: 43 KRGILIKGVLRINPKKFTDAFISADYNERDILLEGVSSRNRALPGDVVAVELIPQSLTKV 102 Query: 68 ------------------KERESAEPEELVEPFLTR----FVGKVQGKN-DRLAIVPDHP 104 + + ++E R F+ + + P Sbjct: 103 IHENNAEKNTSEILVNETNNVKRGKVVFIIEKKHPRVATGFIMNYRSNKFGFAYMSPVDS 162 Query: 105 LLKDAIPCRAARGLNHEFKEGD----WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP 160 L + + D VA + + Y EL + + + Sbjct: 163 RLPRILIPLQQCPPLFLTRPQDFCKTLFVARIIEWEI-DMGFAYGELMRSLGEAGNIEAE 221 Query: 161 WWVTLARHNLEKE-APDGVATEML---------DEGLVREDLTALDFVTIDSASTEDMDD 210 +A + ++ + + + +E R+DL TID A+ D+DD Sbjct: 222 TESIIAANAIDSSPFGEDIIACLPNGDSWSIKPEEFKKRKDLREECIFTIDPATARDLDD 281 Query: 211 ALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDL 270 A+ K + DD ++ V IAD + +I E SKLD AAK RA + YL IPMLP L + L Sbjct: 282 AVSCKKIGDDLFEVGVHIADVSFFIEEESKLDIAAKSRATSVYLCQKVIPMLPAVLCERL 341 Query: 271 CSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES 330 CSL R + + +DGT+ F + I S KL Y +E D + Sbjct: 342 CSLNPGVDRLAYSVIWNMRSDGTVLTEW-FGRSVIRSCVKLSYTHAQQLIETGTDSDLKK 400 Query: 331 EA-----------IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIV 378 E + + + L +I Q + R + + D+P F L + G Sbjct: 401 EEFPIVEGFSLEKVRDVIHCLFKISQNLRKRRFDSGALRIDQPKLSFNLDSETGLPNGCS 460 Query: 379 AEPRRIANRIVEEAMIAANICAARVLR-DKLGFGIYNVHMGFDPANADALAALLKTH--- 434 + +NR++EE M+ AN+ R + I H P + + + Sbjct: 461 VYEYKDSNRLIEEFMLLANMAVGRKIYAAHPDQAILRNHPAPHPIMLQEVQRICSAYSIF 520 Query: 435 -GLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEI-------STEPGPHFG 486 + + +L +L + + + A H+ Sbjct: 521 FDISDSSSISKSLTNLSQLESDSRMFIEAAVTMLCAKPFQNATYFCTGTVDDESLYRHYA 580 Query: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVIKG----ETATRPQDEITVQMAERRRLNRMAE 542 L + Y +TSPIR+Y D++ HRLL A + + + I ER+ + A Sbjct: 581 LNVPIYTHFTSPIRRYPDILVHRLLTAALDSTFKVKGRPKQLQAIADHCNERKWTAKKAS 640 Query: 543 RDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF--LHAVRDE 600 D +A ++K+ + + +V + + V + G + + L + E Sbjct: 641 EQSSDVFFAIYVKECGPFEEK--GVVVAVLDKSIDVLCIRLGVVKRVYCDKLLLSGHKYE 698 Query: 601 LVCSQENGTVQIKGE 615 + T+ K Sbjct: 699 YNILKPKLTLFWKKN 713 >UniRef50_A0CC06 Chromosome undetermined scaffold_166, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CC06_PARTE Length = 897 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 139/706 (19%), Positives = 245/706 (34%), Gaps = 123/706 (17%) Query: 8 LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQM-------KKVMHGDRI 60 + Q+KQ L EG + F+ Q+ +V+HGDR+ Sbjct: 212 VQQIKQGL-----LFEGRISIDRNN------IKLARIFVKQFQLEIKINQQNRVLHGDRV 260 Query: 61 IAVIHSEKER-------------------------------------------------- 70 + SE + Sbjct: 261 AVELLSEDQWEQQQKQKEIKFDEDDDDDGNNNTHTNDTSHEIMSTSHLQNLFRKVQSQNL 320 Query: 71 -ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 + +++ F G V+ VP + I + ++ + Sbjct: 321 VPYGKVVSVLQRTERHFCGHVENN----IFVPADGRYPNFIL----KHSKYDTLQDKKIQ 372 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE-KEAPDGVATEML----- 183 + P+ D+ +L + + D ++ V L H +E +E V + Sbjct: 373 VQFVDWPVWSDKPL-CKLKKVLGKAGDMYIEGNVILLEHQVEIREFSHQVLACLPIEGDK 431 Query: 184 -----DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEG 238 E R DL + +ID +D+DD L + L ++ ++ V IAD + ++ Sbjct: 432 YRISEQEIKRRMDLRDILVCSIDPVGCKDIDDTLHCRRLENNLYEVGVHIADVSHFVKPD 491 Query: 239 SKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNI 298 S +DK A R T YL MLP+ L+++LCSL +N R + + I+D + Sbjct: 492 SAIDKEAAHRCTTVYLVDRRTDMLPKLLTENLCSLVSNVDRLAFSVIWIMDDQANIKD-V 550 Query: 299 EFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358 +F + I S A L Y Q + ++N D + + + +RLL + ++ + R + + Sbjct: 551 KFGKSVIRSVASLHYQQAQEMIDNPND----NSQLTQGIRLLNMLAKKLKQLRTDQGALS 606 Query: 359 KDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-GIYNVH 416 +F ++ D+ N +VEE M+ AN A + + + H Sbjct: 607 LASNQVKFSFDDETHNPSDVRMYQLYDTNSLVEEFMLLANCSVANQILQRFPSISVLRRH 666 Query: 417 MGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIRRFQSFA 475 L L+ G + L + +++R D+ + R + A Sbjct: 667 QEPKMKQLKELQILMNDLGYQFSFDTSKLLSESLDQIQRPNDSFFNKLIRMITTRCMNEA 726 Query: 476 EI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD---- 525 H+GL E Y +TSPIR+Y D++ HRLL A I E+ Sbjct: 727 LYVCTADVDYPELYHYGLAAELYTHFTSPIRRYADVLVHRLLAASIDLESLPPSMSNKIR 786 Query: 526 --EITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDN 583 I ++ R R+ R A R D+ F K++ + A I I + V + Sbjct: 787 MTRICDKLNMRHRMARFASRASSDYHTYLFFKNRPQQIDQ--AIITGILTDKVTVMIPRY 844 Query: 584 GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA 629 I A + + I T Y++ D I V I+ Sbjct: 845 VLEGTIDAQII------------DRMNIIIQGTRYRIFDYIQVEIS 878 >UniRef50_Q08162 Exosome complex exonuclease DIS3 n=24 Tax=Saccharomyceta RepID=RRP44_YEAST Length = 1001 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 116/617 (18%), Positives = 214/617 (34%), Gaps = 64/617 (10%) Query: 66 SEKERESAEPEELVEPFLTRFVGKVQGKN--------DRLAIVPDHPLLKDAIPCRAARG 117 S+K + +A+ + ++VG++ + + ++ L R Sbjct: 383 SKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLPK----VRIRT 438 Query: 118 LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APD 176 V + P + + + + L H++E Sbjct: 439 RRAAELLDKRIVISIDSWPTTH-KYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSK 497 Query: 177 GVATEMLDE---------------------GLVREDLTALDFVTIDSASTEDMDDALFAK 215 V + E R+DL +ID D+DDAL AK Sbjct: 498 KVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDIDDALHAK 557 Query: 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRA 275 LP+ ++ V IAD T ++ G+ LD R + YL I MLP L DLCSL+ Sbjct: 558 KLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKP 617 Query: 276 NEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAE 335 R + L I N+ F + I S+ Y+Q +++ +++ + Sbjct: 618 YVDRFAFSVIWELDDSANIV-NVNFMKSVIRSREAFSYEQAQLRIDDK----TQNDELTM 672 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMI 394 +R L ++ + + R + P+ + + + + ++ + N +VEE M+ Sbjct: 673 GMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFML 732 Query: 395 AANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTH-GLHVDAEEVLTL-DGFCK 451 ANI AR + D + H N + L +L T + + E L D + Sbjct: 733 LANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDR 792 Query: 452 LRRELDAQPTGFLDSRIRRFQSFAE------ISTEPGPHFGLGLEAYATWTSPIRKYGDM 505 D + R A+ S H+GL ++ Y +TSPIR+Y D+ Sbjct: 793 CVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDV 852 Query: 506 INHRLLKAVIKGETA------TRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 + HR L I E D I + + R + A R ++ + +++ Sbjct: 853 VAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNN-- 910 Query: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQ-ENGTVQIKGE--- 615 ++ ++ + G+ V + G I L + + E + Sbjct: 911 -ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDK 969 Query: 616 -TVYKVTDVIDVTIAEV 631 V D ++V + V Sbjct: 970 PRDVYVFDKVEVQVRSV 986 >UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09B28_STIAU Length = 630 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 163/642 (25%), Positives = 255/642 (39%), Gaps = 44/642 (6%) Query: 22 AEGVVKATEKGFGFLE---VDAQK--SYFIPPPQMKKVMHGDRIIAVI-HSEKERESAEP 75 G + +GFGFL + + S FIPPP++ + D + A + R +A Sbjct: 10 VTGRIDVHPRGFGFLVVQPPPSGEVLSAFIPPPELASFLADDTVSATVSQGADGRWTASG 69 Query: 76 EELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRH 135 L++ + G+V + + D + P + GD VA + Sbjct: 70 LSLLQRPREQVYGEVVLRKGTPFLRIDREVASSDWPLETGTA----VQTGDAVVARIVE- 124 Query: 136 PLKGDRSFYAELTQYITFGDDHFVPWWV--TLARHNLEKEAPDGVATEM------LDEGL 187 A L + + V V +ARH+L ++ P V E Sbjct: 125 -------GKAVLLHRL----EPGVDRSVARIIARHDLRRDFPPEVLEEARAVRGVPHALG 173 Query: 188 VREDLTALDFVTIDSASTEDMDDALFAKAL-PDDKLQLIVAIADPTAWIAEGSKLDKAAK 246 R DL AL VT+D+ ST D+DDA+ D L+L+V+IAD ++ EGS LD+AA+ Sbjct: 174 ARRDLRALPTVTVDAPSTRDIDDAISVLPAGEDGALRLLVSIADVAEFVTEGSALDRAAR 233 Query: 247 IRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIE 306 R + YL G +PMLP ELS SL E R L+ + + A+G + + + I Sbjct: 234 ERGTSVYLAGHVLPMLPEELSSHWLSLVPGEERRCLSVELRIDAEGHVTAA-DVSESLIR 292 Query: 307 SKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRF 366 S A+L YD+V+ +L+ G E + E + R R + R + RF Sbjct: 293 SWARLNYDEVAAYLD-RGAVSAAMEPVREAMPWFRAASARLAVARAGRGGMELAREEARF 351 Query: 367 ILGE-KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANAD 425 G+V I P A++++E M+AAN A + D+ ++ V D Sbjct: 352 TFDAGTGQVSGIENTPPTTAHQLIERFMVAANEAIASWMEDRGLPAVFRVQDEPDRQRVA 411 Query: 426 ALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA-QPTGFLDSRIRRFQSFAEISTEPGPH 484 L+A G LT R++ L S +RR FA + P H Sbjct: 412 DLSAFAHHSGFEAGFGGRLTPLALAAFDRQITGCAAEPALRSVLRRSLGFARYTVVPSGH 471 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD----EITVQMAERRRLNRM 540 FGL Y +TSPIR+Y D+ HR LK ++G QD ++ V++ R + + Sbjct: 472 FGLAARRYLHFTSPIRRYADLAVHRTLKQYLRGRRDFAHQDPAVEQLAVRLNARAKASSR 531 Query: 541 AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE 600 AE+D L AR + G + A I + G+ ++L +P L Sbjct: 532 AEQDRHRVLEARLMASHVGKS--YPARITRVKPFGLLIQLDGMLVEGVVPMDSLPGGP-- 587 Query: 601 LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 T + E + V + + I Sbjct: 588 -FRPDARETSLVGKERSFTVGMPLMAKVVSTDEVLGRIEFAL 628 >UniRef50_D0A7T6 Exosome complex exonuclease RRP44p homologue, putative n=4 Tax=Trypanosoma RepID=D0A7T6_TRYBG Length = 972 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 129/730 (17%), Positives = 242/730 (33%), Gaps = 126/730 (17%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPP-QMKKVMHGDRI 60 Q+ L + S+T G ++ KG F + +P + + +HGD + Sbjct: 249 VQNGTYLRG--KLRVSETNCFFGEIRGQWKGHNF------ERVLLPGRTNLNRAIHGDIV 300 Query: 61 IAVIHS-------EKERES-------------------------------------AEPE 76 + + + Sbjct: 301 TVELLPVASWRPLRGAKPTEEMNDTGAGGDDHENSGREGIGEESEGAALARGYTPVGRVV 360 Query: 77 ELVEPFLTRFVGKVQGKNDR--------------LAIVPDHPLLKDAIPCRAARGLNHEF 122 + F G + + + P + R + Sbjct: 361 GITTMNRRPFCGSIDVEELNKLADTLDTLTGTVSVLFQPKDNRIPR---IRITTAHLGDL 417 Query: 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATE 181 K+ +V + + + + D V L +++ + + V Sbjct: 418 KDKRLSVI-IDDWG-EHSSFPVGHYVEVLGTIGDKDTEAKVILLENDIPHYDFSEAVYDC 475 Query: 182 ML--------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + +E R DL L V++D D+DDAL + + + L++ V IAD T Sbjct: 476 LPKGEWNVTEEELGNRLDLRDLCVVSVDPLGCRDIDDALHCRRVNGNHLEVGVHIADVTH 535 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ EG+ +D+ A R+ + YL I MLP+ L+++LCS+ A+E R + + + Sbjct: 536 FLKEGTAMDEEAAKRSTSVYLVDRRINMLPQLLTENLCSIVADEDRYAFSIMWEFDENYS 595 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN 353 + F I S+A L Y +++ D A +R L Q+ + + R Sbjct: 596 VVREF-FGKTVIRSRAALYYGDAQRMIDDPEDES----EAAVSLRYLMQLSRHFRKRREK 650 Query: 354 HALVFKDRPDYRFILGEKG-EVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-G 411 +F +++F + D+ A +N ++EE M+ AN AAR + Sbjct: 651 DGALFLCSQEFKFKVDNDHVNPTDMQAYQTFDSNSMIEEWMLFANAAAARRVYASFPRWT 710 Query: 412 IYNVHMGFDPANADALAALLKTH-GLHVDAEEVLTL-DGFCKLRRELDAQPTGFLDSRIR 469 + H D L ++ G+ +D L L + K D + + + Sbjct: 711 LLRRHQAPAENAFDTLNEAIRRKIGVKLDDTTSLALNESLEKCVDPSDPYFNRLIRTLVT 770 Query: 470 RFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR- 522 R A+ S + HFGL + Y +TSPIR+Y D+I HR L A + + Sbjct: 771 RCLRQAQYFSSSEVSKDEFHHFGLAMPIYTHFTSPIRRYADVIVHRQLAAALGIMDVSEA 830 Query: 523 -----PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA-AEIVDISRGGM 576 + + + R + A RD + +L++ A + +V +S + Sbjct: 831 HMVSVKMEALASNLNYRHEQAQKAGRDSQNLFTGFYLRNFANQEIPSEDGYVVKLSETHV 890 Query: 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIA---EVRM 633 V + G I L V + D + V I + Sbjct: 891 FVLVPKYGQEGKIAKETL--------------------VRVPNLLDKVKVGIEVRQRGDV 930 Query: 634 ETRSIIARPV 643 S++ + Sbjct: 931 LRASLVFSII 940 >UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XYF0_BRAFL Length = 813 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 121/578 (20%), Positives = 211/578 (36%), Gaps = 50/578 (8%) Query: 70 RESAEPEELVEPFLTRFV-GKVQGKNDR----LAIVPDHPLLKDAIPCRAARGLNHEFKE 124 +++A+ + E +R G ++ +D+ + P L + + Sbjct: 193 QKTAKVVYIYEKKHSRACTGHLKKLDDKDREKVLFSPIDHRLPRLKVPLEDCPAGFKERP 252 Query: 125 GD----WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVA 179 D +A + + A L + + L + ++ E + V Sbjct: 253 EDHAKFLFIARITDW-KEDSGFAEARLAKSLGEAGQIEPETEGLLVENGVDFSEFSEVVL 311 Query: 180 TEML---------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 + +E R DL TID A+ D+DDA+ L D ++ V IAD Sbjct: 312 QCLPQDLPWSIPAEEFENRRDLRLDCIFTIDPATARDLDDAVSCNKLDDGTYEVGVHIAD 371 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 + +I E + LD A RA + YL IPMLPR L + LCSL E R + L+ Sbjct: 372 VSYFIQENTALDLTAACRATSVYLVQKVIPMLPRLLCEQLCSLNPAEERLAFSVIWKLTE 431 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE-----------SEAIAEQVRL 339 G + D F I S KL YD ++N + + +AE+V Sbjct: 432 TGDVLDEW-FGRTIIRSCVKLSYDHAQSIIDNPDQLPTQEQLPTISDGHSIQDVAERVLN 490 Query: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANI 398 L +I Q + R + + D+P F L + G R +NR++EE M+ AN+ Sbjct: 491 LYKISQNLRKKRFDGGALRLDQPKLAFSLDPESGLPNGCSVYQIRDSNRLIEEFMLLANM 550 Query: 399 CAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD 457 A + + + H P + L T G+++D L D Sbjct: 551 AVAHKIHESFPERAVLRRHPPPQPKMVEDLVKTCGTMGINLDISSSGALHQSIARYIGDD 610 Query: 458 AQPTG---FLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMIN 507 + L + + A+ H+ L + Y +TSPIR+Y D++ Sbjct: 611 VETQATFYILTAMASKPMQLAKYFCSGCLPEEGMYHHYALNVPLYTHFTSPIRRYADVLV 670 Query: 508 HRLLKAVIKGETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTR 563 HRLL A + A E +T +R+ ++ + D +A F+K+ + Sbjct: 671 HRLLGACLGCGPAVEKSAEELQGMTDHCNDRKDASKRVQEASADMFFASFVKECGPLEE- 729 Query: 564 FAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL 601 ++ + + V + G + + + Sbjct: 730 -DGMVMGVLDQAVDVLVWRLGVVKRAYCNAIPLKSYDF 766 Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 17 SQTPRAEGVVKATEKGF--GFL-EVDAQKSYFIPP-PQMKKVMHGDRIIAVIHSEKERE 71 + +G ++ + F ++ D +IP + ++GD ++ + E Sbjct: 15 KKGDFIKGALRINARNFEDAYVPAPDGMSDLYIPGLHARNRALNGDIVVLKVLPRSEWR 73 >UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria RepID=B9L5L4_NAUPA Length = 652 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 160/647 (24%), Positives = 283/647 (43%), Gaps = 58/647 (8%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHGDRIIAV-IHSEKE 69 + + + G V T+KGFGFL +K Y I + GD +IA + ++K Sbjct: 38 KIIKLKPKYRIGKVDVTKKGFGFLTPLGVKEKDYLIEAEHLNGAGRGDLVIAEKLFNKKG 97 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R A+ ++E + V + + +P +K + A K + AV Sbjct: 98 RPKAKVVYILEKAFSVSVVYLTFEYKNNKKIPVLRNIKTDLQTYVAEKKKTLKKLPEGAV 157 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML------ 183 ++ + ++ + DD +V ++LA +N ++E E Sbjct: 158 FKVDNYTN--------KIIDVLGVLDDPWVDEKISLALYNKKEEFSKKAIAEAEAYGDYV 209 Query: 184 --DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 + R DLT L F TID + +D DDA++ + +L VAIAD + ++ + Sbjct: 210 EKEFYPNRVDLTDLSFCTIDPPTAKDHDDAIYFDKEKN---ELYVAIADVSEYVYLNGNI 266 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK AK R F+ Y P +IPMLPR+LS+++CSL+ E R ++ L+ + E F Sbjct: 267 DKEAKERGFSIYFPHKSIPMLPRQLSENICSLKEQEDRLAFVFKIKLNNKNEVVKE-ELF 325 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPESE-AIAEQVRLLAQICQRRGEWRHNHALVFKD 360 A I+SK K YD+V ++L+ + E++ I E + L + ++ R + Sbjct: 326 EAIIKSKRKYSYDRVDEFLDGRFENTDETDNEILEWLMPLWEKVKKIRTKRLKTG-LDFS 384 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 + + L E+G + I E +++++E+ M+ AN AA+++ FGI+ VH Sbjct: 385 SDEIKMTLNEQGLIEKIELEKETPSHKLIEDCMLLANKAAAKMI----DFGIFRVHEKPS 440 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEIST 479 + D L L G+++D EE + ++++ +D I R Q A Sbjct: 441 SNSIDELYESLTALGINIDVEEKDFVKVVRDIQKQAKMMGIEKEVDKLIIRSQQQARYDA 500 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT-----RPQDEITVQMAER 534 + H+ LG E Y +TSPIR+Y D+ HRLLK++I+ + R + + V+++E Sbjct: 501 KNIGHYALGFEKYTHFTSPIRRYSDLTLHRLLKSIIRNDKKQMEFILRNIEALVVKISEL 560 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R E D D YAR+ K+ + + I D P + Sbjct: 561 EREAMKVEWDFYDRKYARYAKEHL--NEIYKGIIEDTE------------------IPPI 600 Query: 595 HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + ++L+ V +K + Y + + +D+ I + T I + Sbjct: 601 AKITEDLLL---GARVFLKDKKKYNLFEKVDIEIVSSNIATAKIKGK 644 >UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis MED297 RepID=A4BI97_9GAMM Length = 647 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 205/650 (31%), Positives = 301/650 (46%), Gaps = 30/650 (4%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVD-AQKSYFIPPPQMKKVMHG 57 M D L L LK + + EG VK T K FGF+ +F+PP +M +V G Sbjct: 11 MLDDKSLAVLQSLKSDIKAAKTLYEGTVKGTGKKFGFVVNAADGSEHFLPPDEMSRVFPG 70 Query: 58 DRIIAVIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 D + I + + AE EEL+ L F G + + P + + Sbjct: 71 DEVRFTIVDQDDGKTKAELEELIRSPLDEFNGVFFVRGKAQGVEPFDSAFGGWLFVPPKQ 130 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 + D A++ RHP AE+ + + D++ + V LA + + D Sbjct: 131 TSH--ANNKDLVRAKVVRHP-WDTGKAQAEVLKSLGSADNNRSWYSVALAEQGIPEAFSD 187 Query: 177 GVATEM-------LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIA 229 + + R+DLT L FVTID+AST+DMDDALFA+ + QL VAIA Sbjct: 188 AELKQAKALAEAGPETDPSRQDLTDLPFVTIDAASTKDMDDALFARPTENG-WQLSVAIA 246 Query: 230 DPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLS 289 D +A+I S+LDKAA+ R T YLPG +PMLP L+D SL +E RP + +M + Sbjct: 247 DASAYIPLDSELDKAAQKRLTTTYLPGLTLPMLPEILADSAMSLVPDETRPAMIFQMQID 306 Query: 290 ADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGE 349 DG + D E F AT+ S+AKL YD V+ W EN E+ E ++ L Q Sbjct: 307 RDGNVSD-FEIFPATVRSQAKLAYDDVAHWFENN----AIPESHQENLQALNDATQALAS 361 Query: 350 WRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG 409 WR +A KDR DYR + + +V DIV E + A +VEEAMI N +A+ L+D+ Sbjct: 362 WRRKNANPMKDRVDYRIRVDDHFQVTDIVQEHKNPARALVEEAMIVTNYQSAQWLQDQ-- 419 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469 G++ H+GF P L LL+ + V L F K+ L + ++ Sbjct: 420 PGLFMCHLGFKPDRETELKGLLRDYTPDVAELNGHDLADFRKIMAASQTIDFP-LYAVLQ 478 Query: 470 RFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITV 529 + S E PHFGLGL Y TSPIRKY D+ HRL+KA + D Sbjct: 479 KRFDRGFWSREAQPHFGLGLSRYTNVTSPIRKYSDLCMHRLIKAKLASRALP-DIDHALS 537 Query: 530 QMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFI 589 + ER ++R A + + + L ++L + + + IV ++ + VRL D GA+ + Sbjct: 538 LLNERGNVSRFAAQKIENRLRYQWLSQQ--PEQTYRGTIVHLNANNLMVRLDDCGAVGQV 595 Query: 590 PAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 639 L +DE ++ E Y++ + V IA V E + Sbjct: 596 ---DLRKRKDEFSYDPLRMMLKF-EEFQYQLEQEVTVKIASVSAEQLKLE 641 >UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobium etli RepID=UPI0001903083 Length = 747 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 146/611 (23%), Positives = 247/611 (40%), Gaps = 46/611 (7%) Query: 75 PEELVEPFLT-RFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMR 133 ++ +G+ + + P + + + R +G GD +A++ Sbjct: 106 VLDITTRDKDGDLIGRPAEWPEDQGVAPAVAIRQQSPAGRQGKGKAPVAGLGDRILAKIF 165 Query: 134 RHPLKGDRSFYAELTQYI-------------------------TFGDDHFVPWWVTLARH 168 +G ++ A + + I G+D + T Sbjct: 166 PAVDRGGPAYTARIIKVIDRRRGAAMGVFRTAPGGGGRLLPIERRGEDMVIDPDFTGGAD 225 Query: 169 NLEKEAPDGVATEMLDEGLV----REDLTALDFVTIDSASTEDMDDALFAK----ALPDD 220 + P V E RED + +TID A +D DDA++A+ Sbjct: 226 GIPHVFPPAVMAEAEAAKPATMSHREDWRDVPLITIDPADAKDHDDAVYAELDPSPDNPG 285 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 + + VAIAD + ++ S LD+ A R + Y P +PMLP +S+DLCSL+ RP Sbjct: 286 GVIVTVAIADVSWYVRPNSPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGLDRP 345 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL 340 LA RM+ S++G + F ++S AKL Y Q ++ D + ++ L Sbjct: 346 ALAVRMSFSSEGRKIGHT-FHRIMMKSAAKLSYQQAQAAIDGNAD-DKTGPMLEPILKPL 403 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA 400 + R + D P+ + +L G V + PR A++++EE MI AN+ A Sbjct: 404 WRAYAVMKRGRDRRQPLELDMPERKILLKPDGTVDRVFVPPRLDAHKLIEEMMIQANVAA 463 Query: 401 ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQ- 459 A L K +Y +H G A + L L T G+ + + + F + + + Sbjct: 464 AETLEKKRQVLVYRIHDGPTLAKQEVLREFLATLGISLAKGGNVRANSFNGILAKAEGTA 523 Query: 460 PTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 ++ + R QS A S E HFGL L YA +TSPIR+Y D+I HR L + Sbjct: 524 HQTMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGFGE 583 Query: 520 ATRP------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 D+I +++ R AER+ D L A L + G + FA + +++ Sbjct: 584 GGITPDEEAALDDIAAEISTFERRAMAAERETIDRLIAHHLSTRVGEE--FAGRVSGVTK 641 Query: 574 GGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 G+ + L D GA FIP L + + + Y++ D + V +AE Sbjct: 642 SGLFIALPDYGADGFIPISTLGSD-YFIYDEAHQALSGERTGLGYRLGDSVTVKLAEAIP 700 Query: 634 ETRSIIARPVA 644 ++ ++ Sbjct: 701 LAGALRFEMLS 711 >UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_SPHWW Length = 769 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 159/620 (25%), Positives = 241/620 (38%), Gaps = 46/620 (7%) Query: 57 GDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAAR 116 GDRI+A A P + + +G + DRL + P K Sbjct: 122 GDRILARTEEAGSGWIAHPMKKLARGEALMLGILHRDGDRLWLRPVDKREKRDTLV---- 177 Query: 117 GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 + GD +AE P + A +T+ + V + +H + P+ Sbjct: 178 SDAGDADAGDLVLAERAGRPPR----ITARVTERLGDPFAPRSFSLVAIHKHGIPDVFPE 233 Query: 177 GVATEM-----LDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVA 227 V E LD G REDL L V ID A D DDA++A D + IVA Sbjct: 234 TVIEEAGLVTRLDLGEGREDLRDLPIVAIDPADARDHDDAIWAMPDDDPGNPGGFRAIVA 293 Query: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287 IAD + ++ GS LD+ AK R + Y P +PMLP LS D+CSL+ E R + C +T Sbjct: 294 IADVSFYVRPGSALDREAKKRGNSVYFPDRVVPMLPEALSADICSLKHGEDRAAMVCHLT 353 Query: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQ-VRLLAQICQR 346 + A+GT+ N F A + A + Y+ ++ +A+A+ ++ L + Sbjct: 354 VKANGTL-ANWRFARAVVRIAANIAYEDAQAAIDGAPVAGTWDKALADSALKPLWACWKA 412 Query: 347 RGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRD 406 R + D P+ R +L EKG +L + R A+R+VE+ MIAAN+ AA+ L Sbjct: 413 LASARDAREPLDLDLPERRVVLDEKGRILSVAPRERLDAHRLVEDYMIAANVAAAKALEA 472 Query: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRREL-DAQPTGFLD 465 K +Y H AL L T + +V+ F + + + D + Sbjct: 473 KKAPVMYRDHEPPSREKLVALKDYLATFDMEFALGQVVRPATFNHILKRITDDAIRPQIM 532 Query: 466 SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQD 525 ++ R Q+ A + HFGL L +YA +TSPIR+Y D++ HR L ET + Sbjct: 533 EQVLRSQTQAYYAPRNAGHFGLALGSYAHFTSPIRRYADLLVHRSLVGAYGLETGKPRLE 592 Query: 526 E-----------------------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 I +++ R AERD D A FL K G Sbjct: 593 GPGRSGDIVPRTALTQEEAERMTPIGELISQAERRAMEAERDTIDRYVAAFLSTKVGE-- 650 Query: 563 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTD 622 I + G + G +P L A R + Y Sbjct: 651 LLDTRITGVQPFGFFATVEGLGGDGLVPVSTLGAERFHYD-EGAQALEGEESGDRYTPGM 709 Query: 623 VIDVTIAEVRMETRSIIARP 642 + + + E S+ Sbjct: 710 KLRLRLVEANPINGSLRFEL 729 >UniRef50_C1N1M6 Predicted protein (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N1M6_9CHLO Length = 889 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 133/682 (19%), Positives = 233/682 (34%), Gaps = 105/682 (15%) Query: 1 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGF----GFLEVDA-QKSYFIPPP-QMKKV 54 MF+++ +Q+ + + +G ++ + F G + DA + + + Sbjct: 216 MFEEHLGASQIAAGIKA-GTLHQGALRTSR--FSPWEGVVGCDAVGADILLSGRSALNRA 272 Query: 55 MHGDRIIAVIHSEKER----------------------------------------ESAE 74 M GD + + E++ + E Sbjct: 273 MDGDVVAVRLLPEEQWKKPGTRIGGGGGGGASLAPRTADDAAAAAAAPAARADGVVPTGE 332 Query: 75 PEELVEPFLTR--FVGKVQGKND-------RLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 +V + + + RL +P L + Sbjct: 333 VVGIVRRSWRERGYAASIDDATNATQTHAVRLLAIPVDRRLPKI----RIQTRQASALLD 388 Query: 126 DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLD 184 V + P+ + + D L +++ V + Sbjct: 389 QRIVVVIDDWPI-DSPHPRGHYVKSLGPLGDADAETDAVLLEADVDDRLFAPAVHACVPP 447 Query: 185 ------------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPD-------DKLQLI 225 REDL +L ++D D+DDAL + L D +L+L Sbjct: 448 LPWAFDERAHLGAQPHREDLRSLRVCSVDPPGCRDIDDALSCRVLVDDDDGAETGQLELG 507 Query: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACR 285 V IAD T+++ + +D A+ R T YL + MLP+ L++D+CSLR R + Sbjct: 508 VHIADVTSFLRPNTAMDAEARKRGTTTYLVQRRLDMLPKPLTEDICSLRGGVERLAFSVF 567 Query: 286 MTLSADGTIE---DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQ 342 A + + F + I+S A L Y + + +++ D P + + + + + Sbjct: 568 FRFDAKTCLPVPGVSPRFTKSAIKSSAALTYQEAQELMDDETDESPLTRDLRRVL-NINR 626 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 + + R + + P+ RF L + LD+ R AN++VEE M+ AN+ AA Sbjct: 627 CARALRKRRVDAGALTLASPEVRFELDASTQDPLDVAMYVTREANQMVEEMMLLANVAAA 686 Query: 402 R-VLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQ 459 +L+ + H P D L G+ +DA TL D RR D Sbjct: 687 EAILKAFPSHALLRRHPTPAPRMFDPLLKACAAVGVDIDASSSKTLADSLDAARRPGDPY 746 Query: 460 PTGFLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKA 513 L R S A S H+GL Y +TSPIR+Y D++ HRLL A Sbjct: 747 FNTLLRIVATRCMSQAVYCVSGAHSVNDRVHYGLAAPLYTHFTSPIRRYADVVVHRLLNA 806 Query: 514 VIKGETATRPQDE------ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAE 567 + E + + R R ++ A R + F K A Sbjct: 807 ALGLERPDASLQDGDALKATAENINSRHRNSQSAGRASVELHTHIFFKKNKAET---DAR 863 Query: 568 IVDISRGGMRVRLVDNGAIAFI 589 ++ + G+ V + G A + Sbjct: 864 VIRVRANGIIVFVPKFGIEAPV 885 >UniRef50_Q8IYB7 DIS3-like exonuclease 2 n=29 Tax=Tetrapoda RepID=DI3L2_HUMAN Length = 885 Score = 460 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 120/625 (19%), Positives = 212/625 (33%), Gaps = 64/625 (10%) Query: 64 IHSEKERESAEPEELVEPFLTRF-VGKV--------QGKNDRLAIVPDHPLLKDAIPCRA 114 + + + SA+ ++E +R G + + P + Sbjct: 224 LSEKSLQRSAKVVYILEKKHSRAATGFLKLLADKNSELFRKYALFSPSDHRVPRIYVPLK 283 Query: 115 ARGLNHEFKEGD----WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL 170 + + D + + + +L + + + L + + Sbjct: 284 DCPQDFVARPKDYANTLFICRIVDWKEDCN-FALGQLAKSLGQAGEIEPETEGILTEYGV 342 Query: 171 EK-EAPDGVATEML---------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220 + + V + +E R DL TID ++ D+DDAL K L D Sbjct: 343 DFSDFSSEVLECLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADG 402 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 ++ V IAD + ++ EGS LDK A RA + YL +PMLPR L ++LCSL + Sbjct: 403 NFKVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKL 462 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPE----------- 329 + TL+ +G I D F I S KL Y+ +E+ + P Sbjct: 463 TFSVIWTLTPEGKILDEW-FGRTIIRSCTKLSYEHAQSMIESPTEKIPAKELPPISPEHS 521 Query: 330 SEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRI 388 SE + + V L I ++ + R + D+ F L + G R +N++ Sbjct: 522 SEEVHQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKL 581 Query: 389 VEEAMIAANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLD 447 VEE M+ AN+ A + + H L GL VD L+ Sbjct: 582 VEEFMLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALN 641 Query: 448 GFCKLRRELDAQP---TGFLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTS 497 D L + R A H+ L + Y +TS Sbjct: 642 KSLTQTFGDDKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTS 701 Query: 498 PIRKYGDMINHRLLKAVIKGET----ATRPQDEITVQMAERRRLNRMAERDVGDWLYARF 553 PIR++ D++ H LL A + A + +RR ++ + +A Sbjct: 702 PIRRFADVLVHSLLAAALGYRERLDMAPDTLQKQADHCNDRRMASKRVQELSTSLFFAVL 761 Query: 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELV----------C 603 +K+ ++ A ++ I + V ++ G I L Sbjct: 762 VKESGPLES--EAMVMGILKQAFDVLVLRYGVQKRIYCNALALRSHHFQKVGKKPELTLV 819 Query: 604 SQENGTVQIKGETVYKVTDVIDVTI 628 + Q + V + +++V + Sbjct: 820 WEPEDMEQEPAQQVITIFSLVEVVL 844 Score = 59.2 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 17 SQTPRAEGVVKATEKGF--GFL-EVDAQKSYFIPPP-QMKKVMHGDRIIAVIHSEKERES 72 + +GV++ K F F+ D + FI + ++GD ++ + E+ Sbjct: 64 KRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEEHW-- 121 Query: 73 AEPEE 77 + + Sbjct: 122 -KVVK 125 >UniRef50_UPI00015B4E71 PREDICTED: similar to ribonuclease n=1 Tax=Nasonia vitripennis RepID=UPI00015B4E71 Length = 961 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 123/687 (17%), Positives = 232/687 (33%), Gaps = 71/687 (10%) Query: 5 NPLLAQL-KQQLHSQTPRAEGVVKATEKGF--GFLEVD-AQKSYFIPP-PQMKKVMHGDR 59 + ++ QL Q +G ++ + + ++ + + I + + GD Sbjct: 251 SEVVKQLLAFQDPENPNVIDGHIRINPRCYQNAYVSLATGDQDLLIVGLKDRNRALEGDL 310 Query: 60 IIAVIHSEKE---------RESAEPEELVEPFLTR-FVGKVQGKNDRLAIVPDHPLLKDA 109 + +I+ + + + + ++E R VG ++ ++ + + P + Sbjct: 311 VAVIINPKDKWFRLTETTWQRTGTVLSILEKAHPRKAVGYLKKQDVFVFLQPRDSRVPQL 370 Query: 110 IPCRAARGLNHEFKEGD----WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTL 165 + + ++ K E+ Q + D V L Sbjct: 371 RINPKTVPKHFYDNPDQFKETLFLCDIVDW--KKVAFAEGEIVQIVGSKGDLSVETKAIL 428 Query: 166 ARHNL---EKE------APDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKA 216 ++L E P + REDL TID A+ D+DDA+ K Sbjct: 429 LENDLILTPYEDELLQDLPPSDYIPTEADLADREDLRETCIFTIDPATAVDLDDAMSCKL 488 Query: 217 LPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 276 L + ++ + IAD T ++ S LDK RA T Y+ MLP++L CSL Sbjct: 489 LENGNFEVGIHIADVTHFLEAFSPLDKKVAERATTVYMVDNVYHMLPKQLCL-ACSLLPG 547 Query: 277 EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES------ 330 + + + + ++ I + F I S ++ Y Q +++ + Sbjct: 548 QDKLAFSVILEMTPSAEIVSS-RFAKTVINSCCQMAYGQAQIMIDDESYDWEKDGSLTIA 606 Query: 331 -----EAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGE-VLDIVAEPRRI 384 + + VR L I R + + D+P L + E R Sbjct: 607 GNYKPSDLVKVVRNLYNISMELKRKRFDEGALRIDQPKLIVFLDKDTRLPSSYKLEERIE 666 Query: 385 ANRIVEEAMIAANICAARVLRD-KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV 443 +N ++EE M+ AN+ A+ L + + H LLK G+H+D E Sbjct: 667 SNSLIEEFMLLANMTVAKYLYETLPEVSLLRSHPEPSMRILQKTRNLLKKFGVHLDVESA 726 Query: 444 LTLDGFCKLRRELDAQPTG------------FLDSRIRRFQSFAEI-------STEPGPH 484 TL + ++S + + A + E H Sbjct: 727 GTLHKTLSKYQVNLNDSGNDGSLDVAYYNMMVINSLCAKSMTRAVYKCSASVKTKEALRH 786 Query: 485 FGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ-----DEITVQMAERRRLNR 539 + L E Y +TSPIR+Y D + HRLL A IK + + ++ L + Sbjct: 787 YALNAEYYTHFTSPIRRYPDCVVHRLLYASIKNQPLPSEWSSKICARVATNCNTKKYLAK 846 Query: 540 MAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD 599 MA+ + ++ D G+ A ++D+ L D G + Sbjct: 847 MAQEQSNALYFT-YMLDLRGSMNAL-AIVMDVKERSADAMLCDTGLKVRLYFSDTIEETT 904 Query: 600 ELVCSQENGTVQIKGETVYKVTDVIDV 626 + + +V VI++ Sbjct: 905 TEFTTNDEVPTVKLTWKERQVDQVINI 931 >UniRef50_Q4Q8N7 Rrp44p homologue, putative n=4 Tax=Trypanosomatidae RepID=Q4Q8N7_LEIMA Length = 920 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 133/693 (19%), Positives = 237/693 (34%), Gaps = 101/693 (14%) Query: 16 HSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPP-QMKKVMHGDRIIAVIHSEKER---- 70 S+T G ++ G F + I M + +H D + + Sbjct: 190 VSETSCFFGEIRGKFDGHTF------QRILIQGRVNMNRAIHDDVVAVQLLPVSSWRGPK 243 Query: 71 --------------------ESAEPEELVEPFLTRFVGKVQG-----------KNDRLAI 99 + + L+ F G + N + Sbjct: 244 GSAPLPESASEEDAITAGFVPTGKVVGLLSSNRRPFCGSLDEGELEQVKANMSDNVSILF 303 Query: 100 VPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFV 159 P + + R + + + +V + PL + + D Sbjct: 304 QPKNNRIPR---IRISTRHVQDLMDKRLSVV-IDDWPL-YSSFPVGHYVEVLGKIGDRDT 358 Query: 160 PWWVTLARHNLEK-EAPDGVATEML--------DEGLVREDLTALDFVTIDSASTEDMDD 210 V L H++ + + V + DE R DL L V++D D+DD Sbjct: 359 EAMVILLEHDVPHYDFSEAVHDCLPKGQWSVTKDEEARRLDLRDLCIVSVDPLGCRDIDD 418 Query: 211 ALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDL 270 AL + + + L++ V IAD T ++ EG+ +D A R+ + YL I MLP+ L+++L Sbjct: 419 ALHCRVVNGNHLEVGVHIADVTHFLHEGTAMDDEAAKRSTSVYLVDRRINMLPQLLTENL 478 Query: 271 CSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES 330 CSL E R + + + + F I S+ L Y ++N D Sbjct: 479 CSLVEAEDRYAFSILWEFDENLNVVRDW-FGKTIIRSRGALYYGDAQRMIDNPADTS--- 534 Query: 331 EAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKG-EVLDIVAEPRRIANRIV 389 IA +R L ++ + R +F +++F + + D+ AN ++ Sbjct: 535 -DIAVSLRELMRLSKHFKAQREEDGALFLASQEFKFKVDNEHVNPTDMQVYQTFEANSMI 593 Query: 390 EEAMIAANICAARVLRD-KLGFGIYNVHMGFDPANADALAALL-KTHGLHVDAEEVLTL- 446 EE M+ AN A + + + + H D L L + +D LTL Sbjct: 594 EEWMLYANAAVATKVYESYPQWTLLRRHEPPAEGAFDTLNDALYSKLRVRLDDTTSLTLN 653 Query: 447 DGFCKLRRELDAQPTGFLDSRIRRFQSFAEIST------EPGPHFGLGLEAYATWTSPIR 500 K D + R A+ + + HFGL + Y +TSPIR Sbjct: 654 KSLDKCEDPQDPYFNKLIRILTTRCLRQAQYFSSGGIPKDEFYHFGLAMPIYTHFTSPIR 713 Query: 501 KYGDMINHRLLKAVIKGETAT------RPQDEITVQMAERRRLNRMAERDVGDWLYARFL 554 +Y D++ HR L A I E+ + + + + R + A RD + +L Sbjct: 714 RYADVLVHRQLAAAIGIESISEQHMNAERMEAVAENLNYRHEQAQRAGRDSQNLFTGFYL 773 Query: 555 KDKA-GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIK 613 ++ G +V +S + V + G + IP L Sbjct: 774 RNFEDGKIPDEEGYVVRVSETHVFVLVPKYGQESRIPREQL------------------- 814 Query: 614 GETVYKVTDVIDVTIA---EVRMETRSIIARPV 643 ETV ++ D + V I + + ++ R + Sbjct: 815 -ETVPRLLDRVKVAIQLKRQGDVMRTKLVFRLI 846 >UniRef50_B0D4A4 Predicted protein n=9 Tax=Dikarya RepID=B0D4A4_LACBS Length = 1000 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 128/740 (17%), Positives = 241/740 (32%), Gaps = 119/740 (16%) Query: 13 QQLHSQTPRAEGVVKATEKGF--GFLEVDA--QKSYFIPPPQMKKVMHGD---------- 58 +G A + + G + V A + I M + + GD Sbjct: 263 NAGVKSGELYQGHFNANQYNYLEGSVPVPAFSKPVLLIGRENMNRAVQGDVVVVEVFDKK 322 Query: 59 -------RII-------------------------AVIHSE---------KERESAEPEE 77 ++ + +++ + Sbjct: 323 EWKAPADEVVDQDTALKNDDAEDSGDEGEGEGNESVAREKKLLESEKRSSEKQPTGRIVG 382 Query: 78 LVEPFLTRFVGKVQGKN-----------DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD 126 +++ +V + + + P LL R G Sbjct: 383 VIKRNWRAYVCHIDSTSLTSSNATSLSLQTVFATPVSRLLPRI----RLRTRQAPILIGQ 438 Query: 127 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLD- 184 + + R R + + + L + + + Sbjct: 439 KILVTIDRW-DTTSRYPEGHFVRALGKVESKEAEQESLLLEFEVPYRPFGKAILDCLPPQ 497 Query: 185 --------------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 E REDL L +ID + +D+DDAL A+ LP+ ++ V IAD Sbjct: 498 GEQWVVPPKSPDSPEWKDREDLRGLIICSIDPPNCQDIDDALHARKLPNGNIEAGVHIAD 557 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 + ++ + +D A R T YL I MLP L +LCSLR R + ++ Sbjct: 558 VSHFVHPDNPMDSEAASRGTTVYLVDKRIDMLPSLLGTNLCSLRPFVERLAFSAIWEMTP 617 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 + I N+ F + I SKA Y++ D + + + + +RLL + + Sbjct: 618 EAEIV-NVRFTKSVIASKAAFTYEEAQI----RKDDPHQQDELTQSIRLLNSLALKLKAG 672 Query: 351 RHNHALVFKDRPDYRFILG--EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKL 408 R + P+ + L E + +D+ + R N +VEE M+ ANI AR +++ Sbjct: 673 RMAAGALNLASPEVKIQLDTSESSDPIDVEQKELRETNSLVEEFMLLANISVARKIQETF 732 Query: 409 G-FGIYNVHMGFDPANADALAALL-KTHGLHVDAEEVLTLDGFCKL-RRELDAQPTGFLD 465 + H+ N + L +L K G+ +D L L + Sbjct: 733 PQTAVLRRHLPPPRTNFEKLQDILMKRKGMKLDVSSSGALAASLDLCVDPELPAFNTLVR 792 Query: 466 SRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519 R AE + + H+GL Y +TSPIR+Y D++ HR L A I Sbjct: 793 IMATRCMLSAEYFCSGSVARDTFGHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIGYTP 852 Query: 520 ATRPQ------DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573 + + + + R+ +MA R ++ LK++ + + ++ Sbjct: 853 LHATLHSKTHVERVLDVVNRKHRMAQMAGRASVEFYVGLALKNRGEREKEKKGTVGEVRE 912 Query: 574 GGMRVRLVDNGAIAFIPAPFLHAV---RDELVCSQENGTVQIKGE----TVYKVTDVIDV 626 +R NG F+ + + + + +N T+ + V D ++V Sbjct: 913 EAFVIRTFRNGLGVFVSKLGIEGLVMFKRDNQFDADNYTITVPSGGGKDVTISVFDKVEV 972 Query: 627 TIA---EVRMETRSIIARPV 643 +I + + + V Sbjct: 973 SIEVEKDKNTQRGRVKMTLV 992 >UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 Tax=Theileria RepID=Q4UH40_THEAN Length = 955 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 124/719 (17%), Positives = 237/719 (32%), Gaps = 121/719 (16%) Query: 17 SQTPRAEGVVKATEKGF--GFLEVDAQKSYFIPP-PQMKKVMHGDRIIAVI--------- 64 G + + G++ + + + + + GD++I + Sbjct: 251 DSGSLFSGTLHMYIGSYQRGYVSC-GNHEFKVNSLIHLNRALDGDQVIVQLIDTPNNTVD 309 Query: 65 -------HSEKE----------------------------------RESAEPEELVEPFL 83 +S+ + + +V Sbjct: 310 NTTDNVHYSDNGIDNNSAGLEEQVGTENDDSNLIYGYLEPEQYKVIKRYCKIVSIVNRMR 369 Query: 84 TRFVGKVQGKNDRL-------AIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHP 136 F G + + VP + + E + V E+ Sbjct: 370 KEFCGSLLPIEGEVGDGYVQRLFVPVDARIP---FISIETRRSKELENN-RIVVEVDSW- 424 Query: 137 LKGDRSFYAELTQYITFGDDHFVPWWVTLARHN-LEKEAP-------------------- 175 + + T+ + DD V V L H + ++ Sbjct: 425 DRFSKRPNGHWTEILGPIDDRNVESTVILREHQVITEDFSLQSYRHLGLITSSLVDTSST 484 Query: 176 -----DGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIAD 230 + R D ++D +D+DDAL K L + ++ V IAD Sbjct: 485 EKDEDKSDIKITPELLGGRVDYRDEVVFSVDPPGCKDIDDALGCKRLSNGNFEVSVHIAD 544 Query: 231 PTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSA 290 T ++ EGS LDK A R T YL MLP+ L+ +LCSL ++ R + + Sbjct: 545 VTYFVPEGSNLDKEASERCTTVYLVDRRTDMLPKLLTTNLCSLMSDVNRLTFSVYWEMDM 604 Query: 291 DGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW 350 +G + +F + I+S+ L Y Q + ++++ ++ ++ +R L + + + Sbjct: 605 NG-VILATKFSKSVIKSRRSLTYQQAQEMIDSSS-----NDEVSVSLRNLNNLSKILRKQ 658 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLG- 409 R V + + +F +VL++ + N++VEE M+ ANI A + ++ Sbjct: 659 RIERGAVELESSEVKFEFDM-SKVLNLESYKTYETNQMVEEFMLLANISVATKIFERFPK 717 Query: 410 FGIYNVHMGFDPANADALAALLKTHGLH-VDAEEVLTLDGFCKLRR-ELDAQPTGFLDSR 467 + VH + L L+ + L+ ++ + E + + T Sbjct: 718 CSLLRVHPPPVEEKLNELNRTLQQQNITSFKYGNSKQLNESLEIVKNEKNDKFTTATKIL 777 Query: 468 IRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 521 R S A + H+GL E Y +TSPIR+Y D+I HRLL + + Sbjct: 778 TTRTMSQALYRNSNDLDEDEFKHYGLCCEYYTHFTSPIRRYADVIVHRLLASALDLAPLN 837 Query: 522 ----RPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMR 577 + + +R R + R+ + K D ++DI+ + Sbjct: 838 VNFIQSLSGQCDLLNKRHRNAQWCSRESDKMFSYLYFKQM--GDVECNGIVLDINEDRVV 895 Query: 578 VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 V ++ G A A + + N + V KV D + V + R Sbjct: 896 VLTLEYGIEAV-------ANVEYKSFDKVNKVLVDLAGNVLKVFDQVKVRLYTCNKHFR 947 >UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7GAY1_PHATR Length = 908 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 124/578 (21%), Positives = 212/578 (36%), Gaps = 44/578 (7%) Query: 49 PQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPL--- 105 +M V D +E R + + ++ + + G + + PD + Sbjct: 340 SEMNNV--ADTFALEDDAESLRPTGKVVGIIRRNFSTYSGSIYAIKNYEREHPDGSITCV 397 Query: 106 ---LKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWW 162 + IP R + G V M P + I V Sbjct: 398 FFPVDKKIPPILIRTTQRDRLFGQRIVVAMDSWPST-SIYPLGHYVRVIGPAGSKDVETE 456 Query: 163 VTLARHNLEKE-APDGVATEMLDEG--------LVREDLTALDFVTIDSASTEDMDDALF 213 V L H++ E P V + E R+D+ + ++ID + +D+DDAL Sbjct: 457 VLLQEHDIPHEPFPAAVLACLPPEDYRIDVDNSPGRQDIRHIPVLSIDPPNCKDIDDALH 516 Query: 214 AKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSL 273 LP+ Q+ V IAD T ++ G+ +D A R+ + YL + MLP L+ DLCSL Sbjct: 517 CTVLPNGNFQVGVHIADVTHYVQAGTAIDLEAANRSTSTYLVNKRLDMLPSLLTTDLCSL 576 Query: 274 RANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAI 333 + N R + ++ + I N+EF I S A L Y Q ++ D Sbjct: 577 KGNVDRYAFSVLWEVTPEAEIL-NVEFQKTIIHSIAALTYQQAQTMIDQPDDPNDIQSNA 635 Query: 334 AEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKG-EVLDIVAEPRRIANRIVEEA 392 +++ + ++ + R + + P+ +F+L + D+ A AN +VEE Sbjct: 636 VKRLAS---LARKFRKRRIDAGALTLASPEVKFVLDSESLNPTDVQAYALLEANAVVEEF 692 Query: 393 MIAANICAARVLRDKLGF-GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFC 450 M+ AN+ ++ + + H + A D+L + K+ L ++ ++ L D Sbjct: 693 MLLANVTVSKKILRHFPTLSVLRRHPAPNRAMFDSLISKAKSKDLDINIDDSKRLADSLD 752 Query: 451 KLRRELDAQPTGFLDSRIRRFQSFAEIS------TEPGPHFGLGLEAYATWTSPIRKYGD 504 E D L R S A+ H+GL Y +TSPIR+Y D Sbjct: 753 AAVVESDPYVNKLLRILSTRCMSPAQYFCSGEFRPMEWHHYGLAAPVYTHFTSPIRRYAD 812 Query: 505 MINHRLLKAVIKGETATRP------QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKA 558 + HRLL A + ++ M R R ++A R F Sbjct: 813 VCVHRLLAAAVGVAPLPPHLSSKSYLHDLCANMNRRHRAAQLAGRASVQLHTLIFFAGDG 872 Query: 559 GTDTRFAAEIVDIS-----RGGMRVRLVDNGAIAFIPA 591 + + A I+D+ V + G + Sbjct: 873 AKEEQ--AYILDVETAEGVEPSFTVIVPRYGIEGRVKL 908 >UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTA8_9BACT Length = 754 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 143/640 (22%), Positives = 256/640 (40%), Gaps = 17/640 (2%) Query: 17 SQTPRAEGVVKATEKGFGFLEV-DAQKSYFIPPPQMKKVMHGDRIIAVIHSE-KERESAE 74 + G++ + G+GF+ D + FIPP + ++G+ + I + K+ + Sbjct: 57 QELEVKTGILSLSVGGYGFVNPIDKSTTIFIPPNKTGAAVNGETVEVSITEQSKKGPVGQ 116 Query: 75 PEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRR 134 ++E L G++Q + + ++P + + + E KEGDW A++ Sbjct: 117 IINILESKLESLSGQLQIRKGQPWLIPLRTGIPAVEL--SVESVPTETKEGDWIRAKLVS 174 Query: 135 HPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEM---LDEGLVRED 191 + + A L+Q + DD + +L+ E D + R D Sbjct: 175 RDTQTGK-ITASLSQSLGNADDLTAEIDAIIDEFDLQSEYSDEAEEAASRIRQRKIARRD 233 Query: 192 LTALDFVTIDSASTEDMDDALFAKALPDD-KLQLIVAIADPTAWIAEGSKLDKAAKIRAF 250 LT TID +D DDAL + + + + IAD A+I S L + K RAF Sbjct: 234 LTKELITTIDPRDAKDFDDALSVHPAKNKKHITIGIHIADVAAYIGPRSTLMTSIKKRAF 293 Query: 251 TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAK 310 T YLPG +PMLP+ L CSL NEV+P +T + N E F +TI+ + + Sbjct: 294 TAYLPGRMLPMLPKVLVSKRCSLIENEVKPAHTVMITFDRESGEVINFERFHSTIKVRKR 353 Query: 311 LVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHN-HALVFKDRPDYRFILG 369 L Y +V D+ + P + + + V+ L + + R + D P+ R + Sbjct: 354 LNYQEVQDYADANFSGDPWGKDVCKDVKTLYEFSHTLRKRREEIEQFIPLDAPEVRVMCD 413 Query: 370 E-KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALA 428 + + + + ++VEE M+AAN A+ L K G++ +H D A + + Sbjct: 414 PVTMTINSLKKDSPSESKQMVEEFMLAANTVVAQELTSKAAPGLFRIHPEPDEEQAASFS 473 Query: 429 ALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLG 488 T + L + L + R A S+ G HFGLG Sbjct: 474 VDANTFYGVSPGDITLRPNAIRFLNSIKGHPSAPAISMDFLRTMQRASYSSMKGLHFGLG 533 Query: 489 LEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP---QDEITVQMAERRRLNRMAERDV 545 Y+ +TSPIR+ D++ H+ L + D++ + R + A R Sbjct: 534 KNLYSHFTSPIRRLADLLVHQQLWNMEDKGGPVYTKDRLDDLAEIINTREAVTDEAYRTT 593 Query: 546 GDWLYARFLKDKAG--TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVC 603 + +++ ++ A I +S MR+ + G A + L + + Sbjct: 594 VNRFKLHYVEALEAGDSELECDALITRVSVKKMRLYIPHYGMYANVNFRDLDSDFFDADV 653 Query: 604 SQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 ++ V + T + D ++V I + R + P+ Sbjct: 654 -EKGLVVGRRTGTTWSCGDTLEVKILGADFKMREFMVMPI 692 >UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepID=C0QZ67_BRAHW Length = 661 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 124/506 (24%), Positives = 215/506 (42%), Gaps = 24/506 (4%) Query: 153 FGDDHFVPWWVTLARHNLEKEAPDGVATEML---------DEGLVREDLTALDFVTIDSA 203 ++ + +N+ E P E + R DL + VTID A Sbjct: 109 DINNAKKDAEIIAKAYNVPTEFPKKCIEEAKLLPDSMENVELEFDRIDLRDIRTVTIDGA 168 Query: 204 STEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLP 263 ++D DDA+ + L +D +L + IAD + ++ GS LD+ A+ R + YL PM P Sbjct: 169 DSKDFDDAISIEKL-NDCYKLGIHIADVSHFVVMGSALDREARKRGNSVYLIDTVYPMFP 227 Query: 264 RELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENT 323 ELS+ +CSL R + +T+ G ++++ F + I+S +L YD D L+ Sbjct: 228 HELSNGICSLNEGVSRFTMTVFVTIDNKGNVKEST-FHKSVIKSSRRLTYDYAQDVLDG- 285 Query: 324 GDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRR 383 + + + + E ++ + + + R ++ + + + + IL + G D R+ Sbjct: 286 --IEQDEDWLVELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERK 343 Query: 384 IANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEV 443 ++I+EE M+ AN A+ L++ G IY VH D D + G + + Sbjct: 344 ETHKIIEELMLIANCEVAKRLKNIKG-SIYRVHDSPDQEKLDTFTRIAFNRGYRLTRDAD 402 Query: 444 LTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYG 503 LD + + L + + R A HFGLG E Y +TSPIR+Y Sbjct: 403 GNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNNIGHFGLGFEYYTHFTSPIRRYT 462 Query: 504 DMINHRLLKAVIKGETATRPQDEI-----TVQMAERRRLNRMAERDVGDWLYARFLKDKA 558 D++ HRLLK ++G +P + ++ R+ ER + ARF+KDK Sbjct: 463 DLLTHRLLKQSLEGVNNLKPTMQQFYTNSAQWCSKTERIAVECERSLDKVKAARFMKDKV 522 Query: 559 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVY 618 G + + + I+ GM V + D G I L + E + Y Sbjct: 523 GNE--YNGIVSGITNFGMFVEIEDRGIEGLIRYATLKSH--YRYDEHEQAAYSEEDAKWY 578 Query: 619 KVTDVIDVTIAEVRMETRSIIARPVA 644 + D I + + +V ++ I P + Sbjct: 579 TLGDRIRIVVYKVDVKELFIDFIPAS 604 >UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria RepID=A6DBI2_9PROT Length = 650 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 165/647 (25%), Positives = 266/647 (41%), Gaps = 58/647 (8%) Query: 13 QQLHSQTPRAEGVVKATEKGFGFLEVDA--QKSYFIPPPQMKKVMHGDRIIAVI-HSEKE 69 Q L + G V T+KGFGFL ++ Y I + GD +IA I +K Sbjct: 38 QILKIKPKYRAGKVDITKKGFGFLIPIGVKERDYIIESHHLNGASKGDLVIAEIIKRKKG 97 Query: 70 RESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAV 129 R A+ ++E V ++ + VP +K P K D AV Sbjct: 98 RPKAKVVYILEKSFVYSVVYLKYEFKNGRKVPVLRNVKTDQPVYVNEKKKTLKKLPDGAV 157 Query: 130 AEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD----- 184 ++ + ++ + + D +V ++L +N ++E E Sbjct: 158 FKVNNY--------TVKIEEVLGVLQDPWVDEKISLGLYNKKEEFSKKAIKEAKAFGDYV 209 Query: 185 ---EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 R DLT L F TID + +D DDA++ + +L VAIAD + ++ + Sbjct: 210 DKLMYPDRVDLTNLSFCTIDPPTAKDHDDAIYFDKEKN---ELYVAIADVSEYVYLNGNI 266 Query: 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFF 301 DK AK R F+ Y P IPMLPRELS+++CSL+ NE R +++ + + E F Sbjct: 267 DKEAKERGFSIYFPHKAIPMLPRELSENICSLKENEDRLAFVFKISFDDNNEVIKE-ELF 325 Query: 302 AATIESKAKLVYDQVSDWLENTGDWQPE-SEAIAEQVRLLAQICQRRGEWRHNHALVFKD 360 A I S K YD+V ++LE + E + I + L + + R + + Sbjct: 326 EAIIHSHRKYSYDRVDEFLEGKFENIDEIDKEILSWLMPLWEKVKHIRTERLKTG-LEFE 384 Query: 361 RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD 420 + R L E G + ++ E +++++E+ M+ AN AA+++ FGI+ VH Sbjct: 385 SDEIRMSLDENGMIKEVKIEKETPSHKLIEDCMLLANKAAAKMI----DFGIFRVHEKPS 440 Query: 421 PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSRIRRFQSFAEIST 479 + D L + L G+ VD +E + K++ + F+D I R Q A Sbjct: 441 QTSLDELYSELGALGIDVDVDEKDFVKVVEKIQAQAKELGIKKFVDKLIIRSQQQARYDA 500 Query: 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET-----ATRPQDEITVQMAER 534 PHF LG + Y +TSPIR+Y D+ HRLLKA IK + R + + V+++E Sbjct: 501 ACTPHFALGFDRYTHFTSPIRRYSDLTLHRLLKATIKNQQKIVDYILRNVEALVVKLSEL 560 Query: 535 RRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 R E D D YAR + G I + Sbjct: 561 EREAMKVEWDFYDRKYARVAELNIGKKY-----------------------EGIIEDKEI 597 Query: 595 HAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 + L V +K + + + +DV I + T I + Sbjct: 598 PPIAKILEDKLLGARVFLKNTEKFNLFEKVDVEIVSSNIATAKIKGK 644 >UniRef50_Q5KDY7 SSD1 protein, putative n=4 Tax=Agaricomycotina RepID=Q5KDY7_CRYNE Length = 1671 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 126/735 (17%), Positives = 229/735 (31%), Gaps = 133/735 (18%) Query: 15 LHSQTPRAEGVVKATEKG--FGFLEVDAQK-SYFI-PPPQMKKVMHG----------DRI 60 L GV++ +K ++ D +I + + G D + Sbjct: 834 LLQAGKLVVGVLRVNKKNRSDAYVATDVLDADIYICGSKDRNRALEGDIVAVELLDVDEV 893 Query: 61 -------------------------IAVIHSEKE----------------------RES- 72 +K+ + + Sbjct: 894 WSTKKDKEEKKRKKEENATYDLKPSTVKKLEKKKDDVEVEGQGLTLFDDEEVNDDTKPTY 953 Query: 73 -AEPEELVEPFLTRF----VGKVQGKN----------------------------DRLAI 99 +VE + +G ++ + + Sbjct: 954 AGHVVAVVERMPGQLFSGQLGVLRPSSAATKEKQELERREREGEKARKEEPETRPKIVWF 1013 Query: 100 VPDHPLLKDA-IPCRAARGL---NHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGD 155 P + IP A N + VA ++R P+ F L + + Sbjct: 1014 KPTDKRVPLIAIPTEQAPADFIDNPDAYSNKLFVATIKRWPITSLHPF-GTLVEELGAIG 1072 Query: 156 DHFVPWWVTLARHNLE-KEAPDGVATEMLD--------EGLVREDLTALDFVTIDSASTE 206 + V L N +E + + E VR DL TID ++ Sbjct: 1073 NSEVETSALLKDCNFPTEEFSEMTMKCLPPMPWSVPEREYDVRTDLREERVFTIDPPHSK 1132 Query: 207 DMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPREL 266 D+DDAL K D + V IAD + ++ ++LD+ A+ RA + YL +PM P L Sbjct: 1133 DLDDALSFKDNKDGTFTVGVHIADVSFFVKANAQLDREARKRATSVYLVQRAVPMFPPLL 1192 Query: 267 SDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDW 326 S+DLCSL + R + T+ +G + +F ++S AKL YD ++ Sbjct: 1193 SEDLCSLVPDYERLTFSAIFTVDEEGNVLQK-KFAKTIVKSCAKLTYDDALTVVKGGALP 1251 Query: 327 QPESE------AIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAE 380 + ++ I +R L I + R + + F +G +D Sbjct: 1252 RSKTSRIHLATDIEGDIRSLHSIASKMRARRIENGAMVVSSSKVSFEFDAQGRPVDCQTY 1311 Query: 381 PRRIANRIVEEAMIAANICAARVLR-DKLGFGIYNVHMGFDPANADALAALLKTHGLHVD 439 A+ IVEE M+ N AR++ + H ++ A G +D Sbjct: 1312 QNGEASVIVEEFMLLTNQSVARIIANALPEQALLRRHEPPSERRLESFVARATKLGFDMD 1371 Query: 440 AEEVLTLD-GFCKLRRELDAQPTGFLDSRIR---RFQSFAEISTEPGPHFGLGLEAYATW 495 TL F K+ A L ++ R+ + H+GL Y + Sbjct: 1372 PTSAGTLQKSFDKVLDNDSALCIDLLRKKVIQRARYFCAGMLDIAKFAHWGLNTPLYTHF 1431 Query: 496 TSPIRKYGDMINHRLLKAVIKGETATR--------PQDEITVQMAERRRLNRMAERDVGD 547 TSPIR+Y D++ HR+L A + + Q +++ ++AE Sbjct: 1432 TSPIRRYADVLVHRMLDACLTSPNPNEVKFLMDRDQVAKAAQQCNMKKQSAKLAEEQSVH 1491 Query: 548 WLYARF---LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCS 604 L + G R A + ++ V + + G + + Sbjct: 1492 LFLCILINDLTEHYGPVVR-EARVTNVLETAFDVIIPEFGVEKRVHVDKMPVETAVYDEH 1550 Query: 605 QENGTVQIKGETVYK 619 ++ ++ + V Sbjct: 1551 RDILSLYWTTKDVIS 1565 >UniRef50_UPI0000D56C52 PREDICTED: similar to exosome complex exonuclease RRP44 n=1 Tax=Tribolium castaneum RepID=UPI0000D56C52 Length = 844 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 122/658 (18%), Positives = 238/658 (36%), Gaps = 59/658 (8%) Query: 17 SQTPRAEGVVKATEKGF--GFLEVDA--QKSYFIPPP-QMKKVMHGDRIIAVIHSE--KE 69 +G ++ K ++ + + Y I + GD ++ + +E + Sbjct: 147 ETRELMKGYIRINPKNAKESYVGNEDVSKTDYMITSVLDRNRAFDGDEVVLRLKTETEDK 206 Query: 70 RESAEPEELVEPFLTR----FVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE- 124 +++ E + + R F+ ++ + P + R + + K Sbjct: 207 KKTMEVVYITKKIHPRTAVGFLAPIEKNKEYALFTPRDKRIPKIKIPRISWPSGFQSKPQ 266 Query: 125 ---GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL-EKEAPDGVAT 180 + ++ K + +T+ + D + L L D + Sbjct: 267 LYQDILFIVKITDW--KDVKYAIGTITENLGLSGDLKIESLAILREFCLDPTPFGDDIRP 324 Query: 181 EMLD-------EGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTA 233 + + REDL TID + D+DDAL K LP+ ++ V I+D + Sbjct: 325 FLPKSTKISTSDLKNREDLRKECVFTIDPITARDLDDALSCKELPNGNYEVGVHISDASF 384 Query: 234 WIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGT 293 ++ E ++LD+ K +A T Y+ MLP EL CSL E + + L+ G Sbjct: 385 FLPENTRLDEIVKSKATTIYMVDSVYHMLPVELCFH-CSLLPGEDKLAFSVFWELTPTGD 443 Query: 294 IEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE-----------AIAEQVRLLAQ 342 I D + I S +L Y+ +++ E ++++V L + Sbjct: 444 IVD-FRIKRSVINSCVQLAYEHAQVMIDDPDRKFERDELPEIYNGFNAHDLSKRVNDLQR 502 Query: 343 ICQRRGEWRHNHALVFKDRPDYRFILGE-KGEVLDIVAEPRRIANRIVEEAMIAANICAA 401 I E R + + ++ F+L GE + + A+R++EE M+ AN+ A Sbjct: 503 IAVCLREKRRQNGSLKINQIKIGFVLDPATGEPKEFYICENKPAHRLIEEFMLLANMTVA 562 Query: 402 RVLRD-KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQP 460 + + + +H P L L+T GLH+D + D Sbjct: 563 KWINEAYPDLAFLRLHEAPKPTMMTELQKSLETLGLHIDISTSGGIQASLNKYISEDDFG 622 Query: 461 TG---FLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRL 510 L+ + + A H+ L + Y +TSPIR+Y D++ HRL Sbjct: 623 KARMIVLNHLLAKPMKRARYFCAGALEEELDYSHYALSIPIYTHFTSPIRRYADIMVHRL 682 Query: 511 LKAVIKG-ETATRPQDE---ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA 566 L A + E T +E I ++ + A D A F++ A Sbjct: 683 LAASLNYREKPTWAPEEVATIAETCNRQKYHAKRAGEASSDLFLAHFVEKN--QPVIENA 740 Query: 567 EIVDISRGGMRVRLVDNGAIAFIPAPFLHAV---RDELVCSQENGTVQIKGETVYKVT 621 +VD + V ++ G++ I + E + +++ + + + ++K+ Sbjct: 741 VVVDAKERSIDVIVIRTGSVVRIYTNNFGDKVTWKSEEIKVRKSSSDEENAKKMWKIF 798 >UniRef50_Q4T2G1 Chromosome undetermined SCAF10273, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4T2G1_TETNG Length = 1074 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 119/684 (17%), Positives = 203/684 (29%), Gaps = 122/684 (17%) Query: 16 HSQTPRAEGVVKATEK-GFGFLEVDAQ---------KSYFIPP-PQMKKVMHGDRIIAVI 64 +G VK ++ + D S + + HGD + + Sbjct: 226 IKSGRYLQGTVKISKHHSEAVVTTDGSSHKDAADLSGSVLVCGIKNRNRATHGDVVAVEL 285 Query: 65 HSEKER--------------------ESAEPEELVEPFLTRFVGKVQGKND--------- 95 E + +++ +V + Sbjct: 286 LPRGEWRGRVAALAEGPGEESESRAMPTGRVVGILQRNWRDYVVTFPPREGPQSQGRGPK 345 Query: 96 RLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGD 155 + VP + + +G V + + + + + Sbjct: 346 HVLTVPWDRRIPKI----RVGTQQADALQGHRVVVRIDSWEST-SQYPNGHMVRVLGRAG 400 Query: 156 DHFVPWWVTLARHNL-------------EKEAPDGVATEMLDEGLVREDLTA-LDFVTID 201 + L + + +P+ D+ R DL +ID Sbjct: 401 ELETEIQTVLVENGIHLSPFSDAQLREMPVSSPERPWRVDPDQAAARRDLRESHLVFSID 460 Query: 202 SASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPM 261 ED+DDAL + L L+L V IAD T ++ EGS D A++RA T YL M Sbjct: 461 PRGCEDVDDALSVRRLDGGLLELGVHIADVTHFVKEGSLTDVEARLRATTYYLADRRYDM 520 Query: 262 LPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE 321 LP LS DLCSL R ++ L A ++ F I S +L Y+ L Sbjct: 521 LPPVLSSDLCSLLGGVGRYAMSVMWQLDAHTLAVKDVWFGRTVIRSSYQLHYELAQALLN 580 Query: 322 ------------NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG 369 + + + + +L Q+ +R R + + + R L Sbjct: 581 GEQAEVPELAGLGPEERDARLAKLTQALEMLTQVARRLRAHRDRGGALELEGVEVRAQLD 640 Query: 370 EKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF-GIYNVHMGFDPANADALA 428 + + +V + V E MI AN AR +++ + H L Sbjct: 641 KDKNITALVPRQPLEVHETVAECMIHANHWVARRIQEAFPHQALLRRHPPPRQEVFGQLV 700 Query: 429 ALLKTHGLHVDAEEVLTL-----------------------------DGFCKLRRELDAQ 459 G + + + + DA Sbjct: 701 DSAAAKGFAITTRHTFSPRGGCLPLNLQRMSPLIFCFYLCRSNKELAESLDRAVDPQDAL 760 Query: 460 PTGFLDSRIRRFQSFAEISTE---------PGPHFGLGLEAYATWTSPIRKYGDMINHRL 510 L S A + H+GL LE Y +TSPIR+Y DM+ HRL Sbjct: 761 VNRLLRMMATSAMSQALYFSTGAQDQAQDQYQYHYGLALEKYTHFTSPIRRYADMVVHRL 820 Query: 511 LKAVIKGET---------ATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTD 561 L A I E + R +E+ + ++ R A++ + K++ Sbjct: 821 LAAAISLEKGEEPGGALASNRELEELAQHINQKNRAADTAQKLSTVLFQCLYFKEQDPQT 880 Query: 562 T---RFAAEIVDISRGGMRVRLVD 582 A I I G+ V + + Sbjct: 881 DPRCTADAVIYSIKNDGVLVFVPE 904 >UniRef50_D2V5N5 Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2V5N5_NAEGR Length = 880 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 119/637 (18%), Positives = 218/637 (34%), Gaps = 78/637 (12%) Query: 17 SQTPRAEGVVKATEKG-------------FGFLEVDAQKSYFIPPP-QMKKVMHGDRIIA 62 + +GV++ + G +E D + + +HGD ++ Sbjct: 255 NSGKYYKGVLRVNQYNSRNAHIKTTMKQNNGIIEEDVSVRVLVEGSADRNRAVHGDMVVI 314 Query: 63 VIHSEKERES-----------AEPEELVEPFLTRFVGKVQGKND----RLAIVPDHPLLK 107 + + E + ++E +V ++ + L +P + Sbjct: 315 ELKPKSEWKKIGSDESRTEPVGRVVAVLERNWREYVACLEESKNNTGDYLLAIPIDSRIP 374 Query: 108 DAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLAR 167 + E + + K + + + D L Sbjct: 375 KI----RIKTKQKNVLENMRLIVRISDW-EKKSKYPSGYYVRTLGPIGDLDTETEGLLVE 429 Query: 168 HNL---EKEAPDGVATEMLD------------EGLVREDLTA-LDFVTIDSASTEDMDDA 211 + L D +E+ E R D+ +ID ED+DDA Sbjct: 430 NQLFTSTLPFSDLALSELPPVSSGAEFKIPQAEIQKRRDIRKTHLVCSIDPIGCEDIDDA 489 Query: 212 LFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLC 271 L K L + +++ V IAD + +I LD A+ R+ T YL + M+P LS DLC Sbjct: 490 LSVKKLSNGNIEVGVHIADVSYYIKYDGYLDLEARRRSTTVYLIDRRLDMIPTLLSADLC 549 Query: 272 SLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE 331 S+R + R ++ + +G + D + + SK L Y+Q + L Sbjct: 550 SIRQGQDRLCVSVFWEFNKEGEVVDTW-YGRTILNSKYALHYEQADELL----------- 597 Query: 332 AIAEQVRLLAQICQRRGEWRHNHALVFKDRPD-YRFILGEKGEVLDIVAEPRRIANRIVE 390 + + L Q+ + R + + + F L + I + + + V Sbjct: 598 --KKDIGALQQLGTLIQKKRLKDGALELNDLEAVSFKLDNAKNPVKIETKDDLLIHHTVA 655 Query: 391 EAMIAANICAARVLRD-KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DG 448 E MI AN A+ + D H + + + G +D E +L + Sbjct: 656 EWMILANAYVAKKIYDSFPVAACLRRHPYPMKDKFQQVIKVAGSRGFEIDLESGNSLSNS 715 Query: 449 FCKLRRELDAQPTGFLDSRIRRFQSFAEIST------EPGPHFGLGLEAYATWTSPIRKY 502 + D + S R S AE + + H+GL L+ Y +TSPIR+Y Sbjct: 716 LDRAEDPEDKYVNLLIRSLTTRAMSEAEYFSTGTLPVDDFVHYGLALQFYTHFTSPIRRY 775 Query: 503 GDMINHRLLKAVIKGETATRP---QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAG 559 D++ HRLL I E DE++ M R +++A+ + +W A + ++ Sbjct: 776 ADIVVHRLLLWAINNEPNPFSTSKLDEMSKYMNNVNRASKLAQMESSEWFKANYFREH-- 833 Query: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHA 596 DT A I +I + + + I Sbjct: 834 KDTIEDAIIFNIKSNAIYIFIPTFRIKGIIYFTTKEG 870 >UniRef50_B9PKJ2 Mitotic control protein dis3, putative n=1 Tax=Toxoplasma gondii GT1 RepID=B9PKJ2_TOXGO Length = 1149 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 121/685 (17%), Positives = 222/685 (32%), Gaps = 128/685 (18%) Query: 66 SEKERESAEPEELVEPFLTRFVGKVQGKND-------------RLAIVPDHPLLKDAIPC 112 ++ E + ++ F G ++ ++ + +P P + + I Sbjct: 469 ADDEEMEGKVVGIIRKNAREFCGTIRPFDNPFRTETATSGLPTEVVFIPADPRIPNIIL- 527 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL-E 171 + +E VA + + R+ T+ + V L + Sbjct: 528 ---KTRQYEQLLNKRIVAVIDSW-DRFSRNPRGHWTEILGEFGSAEAEANVILREQGVVS 583 Query: 172 KEAPDGVATEML-----------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD 220 ++ + ++ R DL + ++D +D+DDAL + L + Sbjct: 584 RDFSLASLRCLPANTWTFADMSEEDRKGRLDLRHVCVCSVDPPGCKDIDDALSLEVLENG 643 Query: 221 KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRP 280 ++ V IAD T ++ EG+ LD+ A R T YL MLP L+ DLCSL N+ R Sbjct: 644 NYRVGVHIADVTYFLKEGTALDEEASERCTTVYLVERRTDMLPSLLTTDLCSLVGNQDRL 703 Query: 281 VLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLL 340 + ++ +G I + F I S+A L Y + + +++ D +AE +R L Sbjct: 704 AFSVLWEMTPEGDIVSS-SFHKTFIHSRAALTYAEAQNMIDDPNDKS----ELAENLRRL 758 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGE------------------------------ 370 I + R + PD + I Sbjct: 759 LAISKVIRRKRTEAGALQLASPDVQIIRDTLKDNRDDKTQPPVKPTETRRGDITSEKNEN 818 Query: 371 ----------------KGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFG-IY 413 + E DI R NR+VE+ M+ AN A + + Sbjct: 819 GEKGERAKECYAEEVVQEEASDIALYQARETNRMVEDFMLLANTTVAEKIVSYFPSASLL 878 Query: 414 NVHMGFDPANADALAALLKTHGL-HVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQ 472 H +AL LLK+ G+ + + L + + + R Sbjct: 879 RRHPDPKEKQLEALKELLKSRGIENFEFSSSKRLAASLNAVAKAAPELDFLVRILTTRCM 938 Query: 473 SFAEISTEP-----------------------------GPHFGLGLEAYATWTSPIRKYG 503 + A + H+GL Y +TSPIR+Y Sbjct: 939 NQAVYFSSGDILSNAHSAKQSLTAALSSSSSSVDISPYFHHYGLAAPLYTHFTSPIRRYA 998 Query: 504 DMINHRLLKAVIKGETATR------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK 557 D++ HR+L A I R + + + R ++A R+ + + K+K Sbjct: 999 DVVVHRMLAAAIGIAEVPRVCRNKQQLSQQCELLNVKHRNAQIAGRNSVQYHVYMYFKNK 1058 Query: 558 AGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETV 617 + + + + G V + G + R+ + + V Sbjct: 1059 GAKEAV--GTVTKVKKNGAMVYVHKYGLEGVV----FFNEREYSFDADKQHLVNRSSGET 1112 Query: 618 YKVTDVIDVTIAEVRMETRSIIARP 642 ++ D + V I +S RP Sbjct: 1113 VQIFDALLVRIEA----EQSNDFRP 1133 Score = 44.5 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 8/74 (10%), Positives = 25/74 (33%), Gaps = 8/74 (10%) Query: 2 FQDNPLLAQLKQQLHSQTPRAEGVVKATEKG--FGFLEVDAQKSYFIPPP-QMKKVMHGD 58 ++ + QLK +G ++ G + + + I + + + GD Sbjct: 330 LREEEITRQLK-----TGKLLKGKLRMAPTCSWRGVVLLSGGREVKIRGKKNLNRAVEGD 384 Query: 59 RIIAVIHSEKERES 72 + + + ++ Sbjct: 385 VVAVELLARADQLK 398 >UniRef50_Q09568 Uncharacterized ribonuclease F48E8.6 n=3 Tax=Caenorhabditis RepID=YR86_CAEEL Length = 817 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 131/696 (18%), Positives = 235/696 (33%), Gaps = 118/696 (16%) Query: 16 HSQTPRAEGVVKATEKGF--GFLEVDAQ---KSYFIPPPQMKKVMHGDRIIAVI------ 64 +GV++ K + FL+ + + M GD + I Sbjct: 47 IEDGSMFKGVLRINPKNYQECFLDHPKGTNHPDVLVLGQDRNRAMQGDVVAVKIKPKEDW 106 Query: 65 -------------HSEKERESAE------------------------------------- 74 H + +R S + Sbjct: 107 LVNYVEYVKWWAEHKKGDRNSGKTDNNSPNKTEKRCLRNEIQDNGVTSDEVPDSCLITIG 166 Query: 75 -PEELVEPFLTRFV-GKVQ----GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGD-- 126 ++E R GK+Q N + V + + ++ + D Sbjct: 167 AIVHILEKKHFRVAAGKLQLMPNSANPNVLFVATDSRVPRILIPKSDVDKEFFSRPKDFE 226 Query: 127 --WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEML 183 A++ + L + + + + H ++ E D + Sbjct: 227 RFLYTAKITDWRAE-SVYADGRLVKLLGMSGEIDTETERIVYEHQIDHREFSDECLESLP 285 Query: 184 -----------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPD------DKLQLIV 226 E R D + TID + D+DDAL AK + D L++ V Sbjct: 286 ITTAENWKVPDAEFEYRRDFRSDIVFTIDPKTARDLDDALHAKHIDDCDGKGTPGLEIGV 345 Query: 227 AIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRM 286 IAD T ++ EG++LDK A R + YL IPMLPR L + LCSL R + Sbjct: 346 HIADVTFFLKEGTELDKWASERGNSTYLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVF 405 Query: 287 TLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESE-----------AIAE 335 +S + + D + F + I S+ KL Y+ D++EN E I E Sbjct: 406 KMSYEAELYD-VWFGRSVIRSRVKLAYEHAQDFIENPEKDFTCDELPDISDGNTPFEIKE 464 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 + +L +I Q + R + + + P +F L E + + + +N++VEE M+ Sbjct: 465 KTLMLHRIAQVLRQKREDSGALRIELPRLKFALDEDKKPQGVSIYEIKDSNKLVEEFMLL 524 Query: 396 ANICAARVLRDKLG-FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRR 454 AN+ A+ + + + H +A G +D L + + Sbjct: 525 ANMEVAKKIAENFPEHALLRNHPPPKEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQ 584 Query: 455 E---LDAQPTGFLDSRIRRFQSFAEI--STEP----GPHFGLGLEAYATWTSPIRKYGDM 505 LD + S + A+ + E HF L ++ Y +TSPIR+Y D+ Sbjct: 585 GKSRLDMCIRQVISSLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYPDV 644 Query: 506 INHRLLKAVI----KGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTD 561 I HR L A + + E EI + + + ++ A + + F+ Sbjct: 645 IVHRQLAAALGYNERSERVPEEIQEICTRCNDTKLASKEASDESAMLYFGVFI--HQTGP 702 Query: 562 TRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 + A ++ + V +V+ G + + + Sbjct: 703 MKCQAVVLGVMDLSFDVLIVEYGVVKRVYVDKMKRD 738 >UniRef50_C5BR14 Exoribonuclease II n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR14_TERTT Length = 655 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 189/646 (29%), Positives = 317/646 (49%), Gaps = 40/646 (6%) Query: 1 MFQDNPL--LAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGD 58 M + L L+QLK + + G V T FGF+ ++ + F+ P +M++V+ GD Sbjct: 1 MLDKDTLSRLSQLKSDIQAAKEYGVGHVAGTNGRFGFVRLEDGRDAFLSPEKMQRVIPGD 60 Query: 59 RIIAVIHS-EKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD-------HPLLKDAI 110 ++ + +K++ A E L+E L+RF+G+ + +VP + I Sbjct: 61 KVKVSLTKNDKDQLEATLESLLEQSLSRFLGQYRVTKKGHFVVPLGNAPGLKSSPINRWI 120 Query: 111 PCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL 170 K+GD VA +++HP + A + + I +D + A+++L Sbjct: 121 FLPPKSRGR--CKDGDMVVARLQQHPYDDGK-ASARILENIGQENDPHIERLYVSAKYDL 177 Query: 171 EKEAPDGVATE---------MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDD- 220 + + + G R D T + FVTID+ +T DMDDA+ D Sbjct: 178 QPRYSEPAQKQTKDIARSFKSEQFGAERTDFTEVPFVTIDAETTRDMDDAVALTVNEDSD 237 Query: 221 --KLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEV 278 + QL VAIADP ++I + S L +++ A + YL G IPMLP EL++ SL V Sbjct: 238 QARYQLHVAIADPASFIDQHSPLAQSSHRSAQSLYLLGGTIPMLPEELANHCFSLAEGTV 297 Query: 279 RPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA---IAE 335 RPVL+CRM ++ DG I + EF ATI S+ KL Y +V +L+ T D +++ IA Sbjct: 298 RPVLSCRMDINTDGEIT-HAEFARATIRSRRKLDYQRVGAFLDGTADTYTDNDPQPQIAT 356 Query: 336 QVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIA 395 ++ LA++ R +R H +V D+ +Y F + ++G++ + R A++IVEEAM+A Sbjct: 357 MLKQLAELADLRRRYRETHQIVSSDQAEYAFEVNQQGKICAVHLRERTQAHKIVEEAMLA 416 Query: 396 ANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRE 455 N A + L G++ H GF + ALLK + D ++++LDGF L + Sbjct: 417 TNYSAGQFLAKAGK-GLFTTHTGFREDRLGEVKALLKEEQIEHD--DIMSLDGFVTLVNK 473 Query: 456 L-DAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAV 514 L + Q L +RR +E+S + H G+G+ YAT TSPIR++ D+ NH + + Sbjct: 474 LSNDQEKATLLPALRRMMPTSELSLDAKGHLGIGMPHYATITSPIRRFTDLFNHWAILSE 533 Query: 515 IKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRG 574 ++G +E +++E R+A+R++ WL ++ + G +A+I +++ Sbjct: 534 LEGAKFRNANEEYLTKLSENLNNGRLADRELQQWLICQYAESLVGETD--SAKIRIVTQQ 591 Query: 575 GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKV 620 G RL G FI L + E + T+ + G VYK+ Sbjct: 592 GFGARLETQGIDGFI----LFDKKTEKSFDAKRMTLDV-GGQVYKL 632 >UniRef50_UPI0000E47D53 PREDICTED: hypothetical protein, partial n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E47D53 Length = 807 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 121/615 (19%), Positives = 220/615 (35%), Gaps = 59/615 (9%) Query: 71 ESAEPEELVEPFLTRFV-GKVQ----GKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEG 125 ++A + E +R G ++ + + P + R + Sbjct: 189 KTARVVYICEYKHSRAASGHLKLPSNPRAPDVMFAPTDHRVPRIYIPRKECPATFSQRPQ 248 Query: 126 D----WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVAT 180 D +A++ P + L I + L H ++ E V Sbjct: 249 DYANTLFIAQIIDWP-RISAFAKGHLLYSIGQAGEVEAETTAMLIEHGIDSSEFTTEVLE 307 Query: 181 EML---------DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADP 231 ++ +E R DL + TID + D+DDAL KAL D ++ V IAD Sbjct: 308 DLPKERPWRIPAEELSQRRDLRSECIFTIDPTTARDLDDALHCKALGDGIYEMGVHIADV 367 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 + ++ E + LDK A RA + YL IPMLPR L ++LCSL ++ R ++ ++ + Sbjct: 368 SYFVKEDTSLDKTASHRATSVYLVQKVIPMLPRLLCEELCSLNPDQERLTMSFIWRMTEE 427 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-----------EAIAEQVRLL 340 G I + I S KL Y D +EN + + +A+ V + Sbjct: 428 GEILQEW-CGRSVIRSCVKLSYLHAQDMIENWEEKGDDIVLPEITNGFGRNEVAQAVLNM 486 Query: 341 AQICQRRGEWRHNHALVFKDRPDYRFILGEKGE-VLDIVAEPRRIANRIVEEAMIAANIC 399 +I + R + + D+ ++ L + ++ +NR+VEE M+ AN+ Sbjct: 487 QKIASNLRKKRFDGGALRLDQVKLQYSLNAETTLPNGYSVYQQKDSNRLVEEFMLLANMA 546 Query: 400 AARVLRDKLGF-GIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA 458 AA + H D LA L ++ GL +D L + Sbjct: 547 AAHRIFKAEPQRAFLRRHPPPKEKMMDDLATLCESLGLDMDGTTAGKLQASLNRYCTSEE 606 Query: 459 QPT---GFLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMINH 508 Q L + A E H+ L + Y +TSPIR+Y D++ H Sbjct: 607 QAKCLLKVLTVLYSKPMQKARYFCCASLEDEEMYRHYALNVPLYTHFTSPIRRYPDILVH 666 Query: 509 RLLKAVIKGETATRPQDE----ITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRF 564 R+L + + E ++ + + + D + +F+K+ + Sbjct: 667 RMLASSLACGPVMERDPERLQRQAMRCNDAKDSAKEVSDKSSDLFFCQFVKECGPLVEK- 725 Query: 565 AAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVR---------DELVCSQENGTVQIKGE 615 A ++ + V +++ G + + + + EL E+ Sbjct: 726 -AIVMAVLDRSFDVLIINLGQVKRVYCNAIPLKKLIAVPIAKYYELTLEWEDEAGSKGVT 784 Query: 616 TVYKVTDVIDVTIAE 630 V K+ + V + Sbjct: 785 QVIKMFSQVTVELTA 799 >UniRef50_B6AH31 Exosome complex exonuclease RRP44, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AH31_9CRYT Length = 1097 Score = 450 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 115/665 (17%), Positives = 207/665 (31%), Gaps = 103/665 (15%) Query: 68 KERESAEPEELVEPFLTRFVGKVQGKND---------------RLAIVPDHPLLKDAIPC 112 ++ + + +++ + G + N +P P + Sbjct: 446 RDHYNGKVVGILKRNWKEYCGTLLPLNTDDNRYSICYNSSARQHRIFIPIDPKIPRIRIH 505 Query: 113 RAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 L V + + + D V L N+ Sbjct: 506 TRMSSLLDY----QRLVVVIDEW-DRSSFYPSGHWVSTLGRAGDLEAETSVILHCRNIPS 560 Query: 173 -EAPDGVATEML------------DEGLVREDLTALDFVTIDSASTEDMDDALFAK---- 215 E P+ V + + R D ++D +D+DDAL + Sbjct: 561 AEFPNKVLRCLPNYGTNKEWEPRESDFSGRSDWRNKLVFSVDPPGCKDIDDALSIELIEG 620 Query: 216 --------ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELS 267 D ++ V IAD T ++ + +D+ A R T YL I MLP EL+ Sbjct: 621 DDANGKLAPNDDVWYRVAVHIADVTHFVKPNTTIDEEASRRCTTCYLVNRRIDMLPGELT 680 Query: 268 DDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQ 327 D+CSL +++ R C ++ I + F I SK Y + ++N + Sbjct: 681 TDICSLVSHKDRLAFTCIWEINGLCKIRRS-NFEKTIINSKHSYTYGEAQSIIDNLSNNS 739 Query: 328 PESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFIL------------------G 369 E A +R L + + + R + + + + L Sbjct: 740 NE----AVALRRLLNLSKILRKRRIDRGALELASSEVKIDLEEARTVKQSDIIDTSTEID 795 Query: 370 EKG-----------EVLDIVAEPRRIANRIVEEAMIAANICAARV-LRDKLGFGIYNVHM 417 + + N +VEE M+ ANI A L+ + H Sbjct: 796 NTSARNCNETSKIPNIKSVNMYQYLDTNSMVEEFMLLANITVAEFTLKHFPSCALLRKHP 855 Query: 418 GFDPANADALAALLKTHGL-HVDAEEVLTLDGFCKLRR-----ELDAQPTGFLDSRIRRF 471 D LA ++ G+ + + L + + D + R Sbjct: 856 EPKYDQLDKLAQVIAKAGIHNFKYKTSAELAKSLNNIKDDPNFQKDPIVNKLIRILTTRT 915 Query: 472 QSFAEI-----STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP--- 523 + A S+E H+GL Y +TSPIR+Y D+I HRLL+A + Sbjct: 916 MNQAVYFTTCKSSEGTYHYGLAENIYTHFTSPIRRYADIIVHRLLEASLGFSKLNEDISN 975 Query: 524 ---QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRL 580 ++T ++ + R ++A RD + K A I+ + + V + Sbjct: 976 KDKMLKLTQRLNKSMRNAQLAGRDSSKLFIYLYCKQH--GKQIVEAMIMQVRNNFILVFV 1033 Query: 581 VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME-TRSII 639 D G + L + + S K+ D + VT+ +I Sbjct: 1034 PDFGFEGSV---NLDTDKFKYDFSVPQLVNNEDPTETLKLFDRVIVTVYISDEYFQNKVI 1090 Query: 640 ARPVA 644 V+ Sbjct: 1091 LDLVS 1095 >UniRef50_UPI0000DB782F PREDICTED: similar to CG16940-PA, isoform A n=1 Tax=Apis mellifera RepID=UPI0000DB782F Length = 786 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 110/654 (16%), Positives = 229/654 (35%), Gaps = 66/654 (10%) Query: 4 DNPLLAQLKQQLHSQTPRAEGVVKATE--KGFGFLEV-DAQKSYFIPP-PQMKKVMHGDR 59 + + LK Q + EG ++ + +L + D Q I + GD Sbjct: 80 EKEIDKLLKNQNTNDAQYVEGYLRINPWCHKYAYLSLSDDQYDLLIVGLRDRNRAFDGDF 139 Query: 60 IIA--------VIHSEKERESAEPEELVEPFLTR-FVGKVQGKNDRLAIVPDHPLLKDAI 110 ++A +H +++++ + E R VG + + P + Sbjct: 140 VVACINQPEKWQVHQGQKQKTGVVVCIREKIHPRKTVGCFKQRGAFTFFYPRDHRVPLVK 199 Query: 111 PCRAAR---GLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLAR 167 R + + E + + + ++ + + D L Sbjct: 200 INRESLQQFAVCPSSYEDTLYLVVITDWIKP--KFAVGKIEKIVGNIGDIRTESNAILLE 257 Query: 168 HNLE-KEAPDGVATEMLD--------EGLVREDLTALDFVTIDSASTEDMDDALFAKALP 218 ++L+ + + + RED TID + D+DD++ K L Sbjct: 258 YDLDVTPYSPDIIKGLPSSDYILTENDLRDREDWRQECIFTIDPDAAVDLDDSVSCKILE 317 Query: 219 DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEV 278 ++ ++ V I+D T ++ S LD RA T Y+ MLP++L +CSL + Sbjct: 318 NENYEIGVHISDVTHYMEFLSPLDIQVSKRATTIYMTDNVYHMLPKQLCQ-ICSLSPGQD 376 Query: 279 RPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPES-------- 330 + + ++ + I F I S ++ Y ++EN + P+ Sbjct: 377 KLAFSVIWEITRNAEIV-KYRFAKTIIRSCCQMSYYHAQKFIENPKNNWPDDFLSINGNF 435 Query: 331 --EAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGE-KGEVLDIVAEPRRIANR 387 ++ +V +L + + + R + + D+P + G + E ++ +NR Sbjct: 436 NFNDLSIKVNILHNLAIQMRKKRFQNGALQIDQPKLYVKIDRITGLPISYNIEEQKDSNR 495 Query: 388 IVEEAMIAANICAARVLRDK-LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL 446 ++EE M+ AN+ A L + H L+ G+H+D + +L Sbjct: 496 LIEEFMLLANMTVATQLYTMIPETALLRNHREPSKHILTVTKDTLQRFGIHLDIKSSASL 555 Query: 447 DGFCKLRRELDAQPTG-----------FLDSRIRRFQSFAEI-------STEPGPHFGLG 488 + + ++S + + A + E H+ L Sbjct: 556 HASIRRYEQGLENENNETKITMKYRMMVINSLCSKAMTRATYICSSTVTAEEELRHYALN 615 Query: 489 LEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-----ITVQMAERRRLNRMAER 543 + Y +TSPIR+Y D + HRLL + +K + + I ++ +MA+ Sbjct: 616 VPLYTHFTSPIRRYSDCVVHRLLYSTMKNVEMPKEWSKKLCKSIAANCNIKKYSAKMAQE 675 Query: 544 DVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV 597 + + +L D G +++++ + V L G + L + Sbjct: 676 RSSELYFT-YLIDLKGPIVTM-GIVLNVNENFINVILCQLGIKLRVSITQLEKL 727 >UniRef50_Q46363 Acetazolamide conferring resistance protein zam n=8 Tax=Chroococcales RepID=ZAM_SYNY3 Length = 782 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 122/688 (17%), Positives = 240/688 (34%), Gaps = 66/688 (9%) Query: 10 QLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQK--SYFIPPPQMKKVMHGDRIIAVIHSE 67 + K ++ E ++ + KGF F D + ++ + +GDR++ + + Sbjct: 55 RGKYNRVTREDVVEARLRCSSKGFCFAIQDDEDATDIYVREGNLSNAWNGDRVLVKVIKD 114 Query: 68 KER---ESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKE 124 R + +++ + +V+ D VP L + + E + Sbjct: 115 GTRRKSPEEQVHLILDRANPSLLAQVKKSEDNYRAVPLDDRLLFELELQDKEQNLGEAVD 174 Query: 125 GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLD 184 + R+P+ E+T+ + + + +H+L + Sbjct: 175 -HLVHVSVLRYPI-AQHPPLGEVTKVLGSDAEAAADTDIVSCKHDLPLGWTPEAIEALQS 232 Query: 185 EGL--VREDLTALDFVTI--------DSASTEDM---DDALFAKALPDDKLQLIVAIADP 231 +L ++T D E + + AL ++ + + Q+ + I D Sbjct: 233 LPKVIEPGELKKRTWITAKLQLVTFGDGPRGETLPWQEVALSLESQAN-QWQVGIHITDI 291 Query: 232 TAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSAD 291 +IAE S LD+ A+ R T YL P+ P L CSL +E R L+ +T+ Sbjct: 292 AHYIAEDSLLDQLARKRGTTVYLEEQICPLFPEGLI-GRCSLIPDEDRLALSFFLTVDDR 350 Query: 292 GTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVR-LLAQICQRRGEW 350 G + E+ ++ ++ +L + +V L + E + ++ L QIC Sbjct: 351 GEVT-GFEYHSSVVKVDHQLDFSEVQTALADIESVSGELKPYGGLLQELFFQICPLIKSQ 409 Query: 351 RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGF 410 R L +G + I+ + ++ E M+ A L+ Sbjct: 410 RLQRGSFNLQTETASPRLD-EGRLGVIMTQETLPIRSLLAELMVVLQREVALQLQALGIP 468 Query: 411 GIYNVHMGFDPANADALAALLKT--HGLHVDAEEVLTLDGFCKLRRELDAQP-TGFLDSR 467 G+Y + + + + L G+ +D E + + L + ++ P L+ Sbjct: 469 GLYCGQVAPEGEDLTDIVKLAGNLDLGVKIDLEGDIIPQHYHHLSQGFESLPAKAVLNHL 528 Query: 468 IRRFQSFAEISTEPGPHFGLGLE-AYATWTSPIRKYGDMINHRLLKAVIKGETATR---- 522 + + + P PHF L + Y SP ++YGD++ RLLK V+ R Sbjct: 529 LANTLKIEKYFSHPAPHFALAYDSGYTHCVSPAQRYGDLVIQRLLKLVLTEGRDRRTKQM 588 Query: 523 ------------------------------PQDEITVQMAERRRLNRMAERDVGDWLYAR 552 ++ + + +R + AE+D+ A Sbjct: 589 KTGVELNAHTCRNQISWNVLPPNLQETIEGDLHQLVLGLNDREQTAEDAEKDLLGLKKAE 648 Query: 553 FLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI 612 +K +AG F I + G V++ D A + L E Q V Sbjct: 649 KMKARAGE--IFRGLITGVQSYGFFVQIFDLLAEGLVHVSSLKDDWYEFRSRQ-CALVGR 705 Query: 613 KGETVYKVTDVIDVTIAEVRMETRSIIA 640 K T Y++ + +DV + V + I Sbjct: 706 KSRTSYRLGNEVDVQVRSVDYYRQQIDL 733 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.149 0.414 Lambda K H 0.267 0.0459 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,916,023,518 Number of Sequences: 3077464 Number of extensions: 178952361 Number of successful extensions: 507289 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1564 Number of HSP's successfully gapped in prelim test: 549 Number of HSP's that attempted gapping in prelim test: 493735 Number of HSP's gapped (non-prelim): 4088 length of query: 644 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 509 effective length of database: 624,938,716 effective search space: 318093806444 effective search space used: 318093806444 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 97 (41.8 bits)