Phyre 2 Results for P22255

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Email | l.a.kelley@imperial.ac.uk
Description | P22255
Date | Thu Jan 5 11:38:47 GMT 2012
Unique Job ID | 88104b0d91495aa5

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2hhma_
Top template information
Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 97%
238 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | D | Q | V | C | Q | L | A | R | N | A | G | D | A | I | M | Q | V | Y | D | G | T | K | P | M | D | V | V | S | K | A | D | N | S | P | V | T | A | A | D | I | A | A | H | T | V | I | M | D | G | L | R | T | L | T | P | D | V | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | L | S | E | E | D | P | P | G | W | E | V | R | Q | H | W | Q | R | Y | W | L | V | D | P | L | D | G | T | K | E | F | I | K | R | N | G | E | F | T | V | N | I | A | L | I | D | H | G | K | P | I | L | G | V | V | Y | A | P | V | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | N | V | M | Y | S | A | A | E | G | K | A | W | K | E | E | C | G | V | R | K | Q | I | Q | V | R | D | A | R | P | P | L | V | V | I | S | R | S | H | A | D | A | E | L | K | E | Y | L | Q | Q | L | G | E | H | Q | T | T | S | I | G | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | S | L | K | F | C | L | V | A | E | G | Q | A | Q | L | Y | P | R | F | G | P | T | N | I | W | D | T | A | A | G | H | A | V | A | A | A | A | G | A | H | V | H | D | W | Q | G | K | P | L | D | Y | T | P | R | E | S | F | L | N | P | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | .
Sequence |  | F | R | V | S | I | Y
Secondary structure |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2hhma_ |

### PDB 2hhm chain A

Region: 1 - 240
Aligned: 238
Modelled: 240
Confidence: 100.0%
Identity: 24%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
2 |
| c2qflA_ |

### PDB 2qfl chain A

Region: 1 - 240
Aligned: 237
Modelled: 240
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase
Chain: A: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli

Phyre2
3 |
| c2p3nB_ |

### PDB 2p3n chain B

Region: 2 - 240
Aligned: 232
Modelled: 239
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: thermotoga maritima impase tm1415

Phyre2
4 |
| d1jp4a_ |

### PDB 1jp4 chain A

Region: 1 - 244
Aligned: 244
Modelled: 244
Confidence: 100.0%
Identity: 23%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
5 |
| c3b8bA_ |

### PDB 3b8b chain A

Region: 1 - 244
Aligned: 238
Modelled: 244
Confidence: 100.0%
Identity: 47%
PDB header:hydrolase
Chain: A: PDB Molecule:cysq, sulfite synthesis pathway protein;
PDBTitle: crystal structure of cysq from bacteroides thetaiotaomicron, a2 bacterial member of the inositol monophosphatase family

Phyre2
6 |
| c3luzA_ |

### PDB 3luz chain A

Region: 1 - 240
Aligned: 224
Modelled: 240
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:extragenic suppressor protein suhb;
PDBTitle: crystal structure of extragenic suppressor protein suhb from2 bartonella henselae, via combined iodide sad molecular replacement

Phyre2
7 |
| c2czhB_ |

### PDB 2czh chain B

Region: 1 - 240
Aligned: 220
Modelled: 227
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: B: PDB Molecule:inositol monophosphatase 2;
PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form)

Phyre2
8 |
| d1g0ha_ |

### PDB 1g0h chain A

Region: 2 - 244
Aligned: 235
Modelled: 240
Confidence: 100.0%
Identity: 17%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
9 |
| c2fvzB_ |

### PDB 2fvz chain B

Region: 1 - 240
Aligned: 221
Modelled: 226
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:inositol monophosphatase 2;
PDBTitle: human inositol monophosphosphatase 2

Phyre2
10 |
| d1ka1a_ |

### PDB 1ka1 chain A

Region: 2 - 244
Aligned: 242
Modelled: 243
Confidence: 100.0%
Identity: 29%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
11 |
| c2q74B_ |

### PDB 2q74 chain B

Region: 1 - 233
Aligned: 212
Modelled: 213
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: mycobacterium tuberculosis suhb

Phyre2
12 |
| d1xi6a_ |

### PDB 1xi6 chain A

Region: 1 - 244
Aligned: 219
Modelled: 232
Confidence: 100.0%
Identity: 21%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
13 |
| d1vdwa_ |

### PDB 1vdw chain A

Region: 1 - 244
Aligned: 228
Modelled: 242
Confidence: 100.0%
Identity: 22%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
14 |
| c2pcrA_ |

### PDB 2pcr chain A

Region: 1 - 231
Aligned: 203
Modelled: 205
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5

Phyre2
15 |
| d1lbva_ |

### PDB 1lbv chain A

Region: 3 - 244
Aligned: 226
Modelled: 242
Confidence: 100.0%
Identity: 20%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
16 |
| d1inpa_ |

### PDB 1inp chain A

Region: 1 - 244
Aligned: 244
Modelled: 244
Confidence: 100.0%
Identity: 25%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
17 |
| c3uksB_ |

### PDB 3uks chain B

Region: 1 - 243
Aligned: 241
Modelled: 242
Confidence: 99.8%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative;
PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii

Phyre2
18 |
| d1d9qa_ |

### PDB 1d9q chain A

Region: 2 - 243
Aligned: 237
Modelled: 242
Confidence: 99.8%
Identity: 19%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
19 |
| d1nuwa_ |

### PDB 1nuw chain A

Region: 2 - 243
Aligned: 241
Modelled: 242
Confidence: 99.4%
Identity: 16%
Fold: Carbohydrate phosphatase
Superfamily: Carbohydrate phosphatase
Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like

Phyre2
20 |
| c2fhyL_ |

### PDB 2fhy chain L

Region: 2 - 243
Aligned: 237
Modelled: 242
Confidence: 99.4%
Identity: 17%
PDB header:hydrolase
Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1;
PDBTitle: structure of human liver fpbase complexed with a novel2 benzoxazole as allosteric inhibitor

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2hhma_ |
|  | 100.0 | 24 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
2 | c2qflA_ |
|  | 100.0 | 27 | PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli
3 | c2p3nB_ |
|  | 100.0 | 24 | PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: thermotoga maritima impase tm1415
4 | d1jp4a_ |
|  | 100.0 | 23 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
5 | c3b8bA_ |
|  | 100.0 | 47 | PDB header:hydrolase Chain: A: PDB Molecule:cysq, sulfite synthesis pathway protein; PDBTitle: crystal structure of cysq from bacteroides thetaiotaomicron, a2 bacterial member of the inositol monophosphatase family
6 | c3luzA_ |
|  | 100.0 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:extragenic suppressor protein suhb; PDBTitle: crystal structure of extragenic suppressor protein suhb from2 bartonella henselae, via combined iodide sad molecular replacement
7 | c2czhB_ |
|  | 100.0 | 26 | PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form)
8 | d1g0ha_ |
|  | 100.0 | 17 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
9 | c2fvzB_ |
|  | 100.0 | 25 | PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: human inositol monophosphosphatase 2
10 | d1ka1a_ |
|  | 100.0 | 29 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
11 | c2q74B_ |
|  | 100.0 | 28 | PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: mycobacterium tuberculosis suhb
12 | d1xi6a_ |
|  | 100.0 | 21 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
13 | d1vdwa_ |
|  | 100.0 | 22 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
14 | c2pcrA_ |
|  | 100.0 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5
15 | d1lbva_ |
|  | 100.0 | 20 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
16 | d1inpa_ |
|  | 100.0 | 25 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
17 | c3uksB_ |
|  | 99.8 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative; PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii
18 | d1d9qa_ |
|  | 99.8 | 19 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
19 | d1nuwa_ |
|  | 99.4 | 16 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
20 | c2fhyL_ |
|  | 99.4 | 17 | PDB header:hydrolase Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1; PDBTitle: structure of human liver fpbase complexed with a novel2 benzoxazole as allosteric inhibitor
21 | d1ftaa_ |
| not modelled | 99.3 | 18 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
22 | c2gq1A_ |
| not modelled | 99.1 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphatase; PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions
23 | d1bk4a_ |
| not modelled | 99.1 | 15 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
24 | d1spia_ |
| not modelled | 98.9 | 18 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
25 | d1ni9a_ |
| not modelled | 96.5 | 17 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:GlpX-like bacterial fructose-1,6-bisphosphatase
26 | d1o12a1 |
| not modelled | 60.8 | 45 | Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
27 | c3fhkF_ |
| not modelled | 42.9 | 13 | PDB header:structural genomics, unknown function Chain: F: PDB Molecule:upf0403 protein yphp; PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide2 isomerase
28 | d1mdah_ |
| not modelled | 42.5 | 16 | Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain
29 | d2dsqg1 |
| not modelled | 29.4 | 27 | Fold:Thyroglobulin type-1 domain Superfamily:Thyroglobulin type-1 domain Family:Thyroglobulin type-1 domain
30 | d1icfi_ |
| not modelled | 28.4 | 31 | Fold:Thyroglobulin type-1 domain Superfamily:Thyroglobulin type-1 domain Family:Thyroglobulin type-1 domain
31 | d1g4ma1 |
| not modelled | 25.3 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like
32 | c2h7tA_ |
| not modelled | 23.9 | 25 | PDB header:protein binding Chain: A: PDB Molecule:insulin-like growth factor-binding protein 2; PDBTitle: solution structure of the c-terminal domain of insulin-like2 growth factor binding protein 2 (igfbp-2)
33 | d1rmja_ |
| not modelled | 21.2 | 31 | Fold:Thyroglobulin type-1 domain Superfamily:Thyroglobulin type-1 domain Family:Thyroglobulin type-1 domain
34 | d1cf1a1 |
| not modelled | 21.2 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like
35 | c1cf1B_ |
| not modelled | 20.2 | 20 | PDB header:structural protein Chain: B: PDB Molecule:protein (arrestin); PDBTitle: arrestin from bovine rod outer segments
36 | d2dsrg1 |
| not modelled | 20.2 | 27 | Fold:Thyroglobulin type-1 domain Superfamily:Thyroglobulin type-1 domain Family:Thyroglobulin type-1 domain
37 | c1ikqA_ |
| not modelled | 19.9 | 31 | PDB header:transferase Chain: A: PDB Molecule:exotoxin a; PDBTitle: pseudomonas aeruginosa exotoxin a, wild type
38 | c2pncB_ |
| not modelled | 18.8 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:copper amine oxidase, liver isozyme; PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
39 | d1x4ka1 |
| not modelled | 18.6 | 63 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
40 | c3equB_ |
| not modelled | 18.0 | 16 | PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae
41 | d1r89a1 |
| not modelled | 17.5 | 27 | Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain
42 | c3g5uB_ |
| not modelled | 16.1 | 12 | PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
43 | c3b5xB_ |
| not modelled | 15.0 | 20 | PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae
44 | c2hydB_ |
| not modelled | 12.6 | 18 | PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866
45 | d1w7ca1 |
| not modelled | 12.2 | 38 | Fold:Supersandwich Superfamily:Amine oxidase catalytic domain Family:Amine oxidase catalytic domain
46 | d2g5gx1 |
| not modelled | 11.9 | 6 | Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:ChaN-like
47 | c1ayrA_ |
| not modelled | 11.6 | 19 | PDB header:sensory transduction Chain: A: PDB Molecule:arrestin; PDBTitle: arrestin from bovine rod outer segments
48 | c3ue3A_ |
| not modelled | 11.1 | 11 | PDB header:transferase Chain: A: PDB Molecule:septum formation, penicillin binding protein 3, PDBTitle: crystal structure of acinetobacter baumanni pbp3
49 | d3pmga4 |
| not modelled | 9.7 | 17 | Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain
50 | d1kfia4 |
| not modelled | 8.9 | 50 | Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain
51 | c1sz1A_ |
| not modelled | 8.7 | 20 | PDB header:transferase/rna Chain: A: PDB Molecule:trna nucleotidyltransferase; PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes
52 | c3b5wE_ |
| not modelled | 8.5 | 18 | PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba
53 | c3djeA_ |
| not modelled | 8.1 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase; PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
54 | c1w7cA_ |
| not modelled | 8.1 | 38 | PDB header:oxidoreductase Chain: A: PDB Molecule:lysyl oxidase; PDBTitle: pplo at 1.23 angstroms
55 | d1p7ga2 |
| not modelled | 7.8 | 20 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
56 | d1dfma_ |
| not modelled | 7.7 | 50 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease BglII
57 | d2b7oa1 |
| not modelled | 7.7 | 31 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase
58 | c1gn4B_ |
| not modelled | 7.5 | 10 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase.
59 | d2j9ga2 |
| not modelled | 7.3 | 15 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like
60 | d1d6za1 |
| not modelled | 7.2 | 23 | Fold:Supersandwich Superfamily:Amine oxidase catalytic domain Family:Amine oxidase catalytic domain
61 | c1pmdA_ |
| not modelled | 7.1 | 15 | PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x)
62 | c1jsyA_ |
| not modelled | 6.9 | 21 | PDB header:signaling protein Chain: A: PDB Molecule:bovine arrestin-2 (full length); PDBTitle: crystal structure of bovine arrestin-2
63 | c3higB_ |
| not modelled | 6.7 | 38 | PDB header:oxidoreductase Chain: B: PDB Molecule:amiloride-sensitive amine oxidase; PDBTitle: crystal structure of human diamine oxidase in complex with the2 inhibitor berenil
64 | d1w2za1 |
| not modelled | 6.7 | 31 | Fold:Supersandwich Superfamily:Amine oxidase catalytic domain Family:Amine oxidase catalytic domain
65 | d1idsa2 |
| not modelled | 6.4 | 10 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
66 | d1f46a_ |
| not modelled | 6.4 | 21 | Fold:TBP-like Superfamily:Cell-division protein ZipA, C-terminal domain Family:Cell-division protein ZipA, C-terminal domain
67 | d1tuea_ |
| not modelled | 6.3 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain
68 | d1g3pa2 |
| not modelled | 6.0 | 71 | Fold:N-terminal domains of the minor coat protein g3p Superfamily:N-terminal domains of the minor coat protein g3p Family:N-terminal domains of the minor coat protein g3p
69 | c1px5A_ |
| not modelled | 5.9 | 29 | PDB header:transferase Chain: A: PDB Molecule:2'-5'-oligoadenylate synthetase 1; PDBTitle: crystal structure of the 2'-specific and double-stranded2 rna-activated interferon-induced antiviral protein 2'-5'-3 oligoadenylate synthetase
70 | d1m1la_ |
| not modelled | 5.9 | 23 | Fold:Suppressor of Fused, N-terminal domain Superfamily:Suppressor of Fused, N-terminal domain Family:Suppressor of Fused, N-terminal domain
71 | c2cw3A_ |
| not modelled | 5.8 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:iron superoxide dismutase; PDBTitle: x-ray structure of pmsod2, superoxide dismutase from2 perkinsus marinus
72 | d1wdjb_ |
| not modelled | 5.6 | 33 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein TT1808 (TTHA1514)
73 | c3dgsA_ |
| not modelled | 5.5 | 60 | PDB header:viral protein Chain: A: PDB Molecule:coat protein a; PDBTitle: changing the determinants of protein stability from2 covalent to non-covalent interactions by in-vitro3 evolution: a structural and energetic analysis
74 | c1jibA_ |
| not modelled | 5.5 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:neopullulanase; PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
75 | c1ma1E_ |
| not modelled | 5.4 | 5 | PDB header:oxidoreductase Chain: E: PDB Molecule:superoxide dismutase; PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum
76 | c1kkcB_ |
| not modelled | 5.4 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of aspergillus fumigatus mnsod
77 | c1svfB_ |
| not modelled | 5.3 | 36 | PDB header:viral protein Chain: B: PDB Molecule:protein (fusion glycoprotein); PDBTitle: paramyxovirus sv5 fusion protein core
78 | c3ot2B_ |
| not modelled | 5.3 | 50 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution
79 | c3ot2A_ |
| not modelled | 5.3 | 50 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0