12/01/2012 06:25:20 : INFO  : Run start: Thu Jan 12 06:25:20 GMT 2012
12/01/2012 06:25:23 : INFO  : Initialised job
12/01/2012 06:25:24 : INFO  : Renaming log file 'phyre2_20120112_062519.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/phyre_20120112_062519.log'
12/01/2012 06:25:25 : INFO  : Initialised job:
Sequence
>batch____
MPYLLEMKNITKTFGSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYE
GEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLMT
LRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSI
LLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSEDDIITMMVG
RELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGIAGLVGAGR
TETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQAIAQGIAMVPEDRKRDGIVPVMAVGKN
ITLAALNKFTGGISQLDDAAEQKCILESIQQLKVKTSSPDLAIGRLSGGNQQKAILARCL
LLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMHE
GKLKANLINHNLTQEQVMEAALRSEHHVEKQSV

12/01/2012 06:25:25 : INFO  : Checked sequence
12/01/2012 06:25:26 : INFO  : Finding homologues with PSI-BLAST
12/01/2012 06:25:27 : INFO  : PSI-BLAST 3 iterations
12/01/2012 06:29:17 : INFO  : PSI-BLAST 5 iterations
12/01/2012 06:35:21 : INFO  : Finished PSI-BLAST
12/01/2012 06:35:22 : INFO  : Running Buildali to generate a3m file
12/01/2012 12:13:15 : INFO  : Converting to HMM
12/01/2012 12:14:33 : INFO  : Calibrating HMM
12/01/2012 12:14:52 : INFO  : Searching HMM database
12/01/2012 12:27:52 : INFO  : Finished buildali
12/01/2012 12:27:53 : INFO  : Predicting secondary structure
12/01/2012 12:27:56 : INFO  : Predicted secondary structure (PSI-Pred)
12/01/2012 12:27:56 : INFO  : Predicting Disordered regions
12/01/2012 12:27:58 : INFO  : Predicted Disorder (Disopred)
12/01/2012 12:27:59 : INFO  : Running memsat_svm check
12/01/2012 12:32:12 : INFO  : Globular protein
12/01/2012 12:32:13 : INFO  : Predicted Transmembrane (memsat_svm) ID '877e225812c7539b'
12/01/2012 12:32:13 : INFO  : Initialising fold library search
12/01/2012 12:32:15 : INFO  : Initialised search input
12/01/2012 12:32:16 : INFO  : Building Ensemble models
12/01/2012 12:32:18 : INFO  : Building hh.c3g5uB_.model.1.pdb
12/01/2012 12:32:26 : INFO  : Building hh.c1yqtA_.model.2.pdb
12/01/2012 12:32:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/hh.c1yqtA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/c1yqtA_.1.pdb
12/01/2012 12:32:34 : INFO  : Building hh.c3ozxA_.model.3.pdb
12/01/2012 12:32:39 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/hh.c3ozxA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/c3ozxA_.3.pdb
12/01/2012 12:32:41 : INFO  : Building hh.c2iw3B_.model.4.pdb
12/01/2012 12:32:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/hh.c2iw3B_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/c2iw3B_.4.pdb
12/01/2012 12:32:49 : INFO  : Building hh.c3bk7A_.model.5.pdb
12/01/2012 12:32:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/hh.c3bk7A_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/877e225812c7539b/c3bk7A_.5.pdb
12/01/2012 12:32:58 : INFO  : Building c1yqtA_.1.pdb
12/01/2012 12:33:04 : INFO  : Building c3g5uB_.2.pdb
12/01/2012 12:33:12 : INFO  : Building c3ozxA_.3.pdb
12/01/2012 12:33:18 : INFO  : Building c2iw3B_.4.pdb
12/01/2012 12:33:25 : INFO  : Building c3bk7A_.5.pdb
12/01/2012 12:33:31 : INFO  : Building c3pihA_.6.pdb
12/01/2012 12:33:38 : INFO  : Building c2vf7B_.7.pdb
12/01/2012 12:33:45 : INFO  : Building c2ygrD_.8.pdb
12/01/2012 12:33:52 : INFO  : Building c2r6fA_.9.pdb
12/01/2012 12:33:58 : INFO  : Building c2yyzA_.10.pdb
12/01/2012 12:34:05 : INFO  : Building c2it1B_.11.pdb
12/01/2012 12:34:11 : INFO  : Building c1oxtB_.12.pdb
12/01/2012 12:34:17 : INFO  : Building c2olkD_.13.pdb
12/01/2012 12:34:24 : INFO  : Building c3fvqB_.14.pdb
12/01/2012 12:34:30 : INFO  : Building c1q1bD_.15.pdb
12/01/2012 12:34:36 : INFO  : Building c1z47B_.16.pdb
12/01/2012 12:34:42 : INFO  : Building c1vciA_.17.pdb
12/01/2012 12:34:49 : INFO  : Building d1g6ha_.18.pdb
12/01/2012 12:34:55 : INFO  : Building c2d62A_.19.pdb
12/01/2012 12:35:02 : INFO  : Building c3dhwC_.20.pdb
12/01/2012 12:36:09 : INFO  : Finished HH model building
12/01/2012 12:36:10 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
12/01/2012 12:36:55 : INFO  : html domain output complete ID '877e225812c7539b'
12/01/2012 16:13:30 : INFO  : Run end  : Thu Jan 12 16:13:30 GMT 2012
