Phyre 2 alignment of P11289 with c2jrmA_

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Job Description | P11289
Confidence | 68.09% | Date | Thu Jan 5 11:32:32 GMT 2012
Rank | 1 | Aligned Residues | 39
% Identity | 15% | Template | c2jrmA_
PDB info | PDB header:structural genomics, unknown function | Chain: A: PDB Molecule:ribosome modulation factor; | PDBTitle: solution nmr structure of ribosome modulation factor vp1593 from2 vibrio parahaemolyticus. northeast structural genomics target vpr55
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 34 | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | Y | D | V | G | M | E | D | A | I | S | G | S | A | I | K | D | D | D | A | F | S | D | S | Q | A | D | R | G | L | Y | L | K | G | Y | A | E | G | Q | K | K | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | S | Q | G | Y | K | A | G | L | N | G | R | S | Q | . | E | A | C | P | Y | Q | Q | V | D | A | . | R | S | Y | W | L | G | G | W | R | D | A | R | D | E | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | S |  | S | G | . | G | G |  |  | S |  | S |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . |  | . | . | . | 30 | . | . | . | . | . | . |  | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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