17/01/2012 02:38:21 : INFO  : Run start: Tue Jan 17 02:38:19 GMT 2012
17/01/2012 02:38:31 : INFO  : Initialised job
17/01/2012 02:38:35 : INFO  : Renaming log file 'phyre2_20120117_023818.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/phyre_20120117_023818.log'
17/01/2012 02:38:37 : INFO  : Initialised job:
Sequence
>batch____
MPFYFRKECPLNSGYLRKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGY
QMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYI
WTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPVGVMFQAIKAVI
IRAGSSGSYCGDTGSGRV

17/01/2012 02:38:39 : INFO  : Checked sequence
17/01/2012 02:38:45 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 02:38:47 : INFO  : PSI-BLAST 3 iterations
17/01/2012 02:40:10 : INFO  : PSI-BLAST 5 iterations
17/01/2012 02:41:38 : INFO  : Finished PSI-BLAST
17/01/2012 02:41:42 : INFO  : Running Buildali to generate a3m file
17/01/2012 02:49:45 : INFO  : Converting to HMM
17/01/2012 02:49:48 : INFO  : Calibrating HMM
17/01/2012 02:50:07 : INFO  : Searching HMM database
17/01/2012 02:54:00 : INFO  : Finished buildali
17/01/2012 02:54:03 : INFO  : Predicting secondary structure
17/01/2012 02:54:16 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 02:54:19 : INFO  : Predicting Disordered regions
17/01/2012 02:54:25 : INFO  : Predicted Disorder (Disopred)
17/01/2012 02:54:28 : INFO  : Running memsat_svm check
17/01/2012 02:58:42 : INFO  : Globular protein
17/01/2012 02:58:44 : INFO  : Predicted Transmembrane (memsat_svm) ID '871c808457684bec'
17/01/2012 02:58:47 : INFO  : Initialising fold library search
17/01/2012 02:58:53 : INFO  : Initialised search input
17/01/2012 02:58:56 : INFO  : Building Ensemble models
17/01/2012 02:59:02 : INFO  : Building hh.c1c0mA_.model.1.pdb
17/01/2012 02:59:31 : INFO  : Building hh.d1asua_.model.2.pdb
17/01/2012 02:59:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/hh.d1asua_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/d1asua_.2.pdb
17/01/2012 03:00:00 : INFO  : Building hh.d1cxqa_.model.3.pdb
17/01/2012 03:00:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/hh.d1cxqa_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/d1cxqa_.3.pdb
17/01/2012 03:00:27 : INFO  : Building hh.d1c0ma2.model.4.pdb
17/01/2012 03:00:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/hh.d1c0ma2.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/d1c0ma2.4.pdb
17/01/2012 03:00:55 : INFO  : Building hh.d1bcoa2.model.5.pdb
17/01/2012 03:01:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/hh.d1bcoa2.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/d1bcoa2.5.pdb
17/01/2012 03:01:23 : INFO  : Building hh.c1k6yB_.model.6.pdb
17/01/2012 03:01:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/hh.c1k6yB_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/c1k6yB_.11.pdb
17/01/2012 03:01:54 : INFO  : Building hh.c1u78A_.model.7.pdb
17/01/2012 03:02:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/hh.c1u78A_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/871c808457684bec/c1u78A_.20.pdb
17/01/2012 03:02:22 : INFO  : Building c1c0mA_.1.pdb
17/01/2012 03:02:46 : INFO  : Building d1asua_.2.pdb
17/01/2012 03:03:12 : INFO  : Building d1cxqa_.3.pdb
17/01/2012 03:03:37 : INFO  : Building d1c0ma2.4.pdb
17/01/2012 03:04:00 : INFO  : Building d1bcoa2.5.pdb
17/01/2012 03:04:25 : INFO  : Building d1exqa_.6.pdb
17/01/2012 03:04:50 : INFO  : Building c3nf9A_.7.pdb
17/01/2012 03:05:14 : INFO  : Building d1c6va_.8.pdb
17/01/2012 03:05:39 : INFO  : Building c1ex4A_.9.pdb
17/01/2012 03:06:02 : INFO  : Building c3f9kV_.10.pdb
17/01/2012 03:06:27 : INFO  : Building c1k6yB_.11.pdb
17/01/2012 03:06:55 : INFO  : Building c3kksB_.12.pdb
17/01/2012 03:07:20 : INFO  : Building c1bcoA_.13.pdb
17/01/2012 03:07:45 : INFO  : Building c3hpgC_.14.pdb
17/01/2012 03:08:09 : INFO  : Building c3dlrA_.15.pdb
17/01/2012 03:08:32 : INFO  : Building d1hyva_.16.pdb
17/01/2012 03:08:55 : INFO  : Building c3l2tB_.17.pdb
17/01/2012 03:09:18 : INFO  : Building c3hosA_.18.pdb
17/01/2012 03:09:38 : INFO  : Building c3v4gA_.19.pdb
17/01/2012 03:09:58 : INFO  : Building c1u78A_.20.pdb
17/01/2012 03:12:58 : INFO  : Finished HH model building
17/01/2012 03:13:01 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 03:14:22 : INFO  : html domain output complete ID '871c808457684bec'
17/01/2012 03:33:05 : INFO  : Run end  : Tue Jan 17 03:33:03 GMT 2012
