Phyre 2 Results for Q47718

Email | l.a.kelley@imperial.ac.uk
Description | Q47718
Date | Thu Jan 5 12:37:09 GMT 2012
Unique Job ID | 871c808457684bec

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1c0mA_ |
|  | 99.6 | 19 | PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase
2 | d1asua_ |
|  | 99.5 | 18 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
3 | d1cxqa_ |
|  | 99.5 | 18 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
4 | d1c0ma2 |
|  | 99.4 | 18 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
5 | d1bcoa2 |
|  | 99.3 | 16 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:mu transposase, core domain
6 | d1exqa_ |
|  | 99.0 | 11 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
7 | c3nf9A_ |
|  | 99.0 | 11 | PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design
8 | d1c6va_ |
|  | 99.0 | 10 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
9 | c1ex4A_ |
|  | 98.9 | 11 | PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain
10 | c3f9kV_ |
|  | 98.9 | 10 | PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd
11 | c1k6yB_ |
|  | 98.9 | 9 | PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase
12 | c3kksB_ |
|  | 98.7 | 11 | PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii
13 | c1bcoA_ |
|  | 98.7 | 14 | PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain
14 | c3hpgC_ |
|  | 98.6 | 13 | PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces
15 | c3dlrA_ |
|  | 98.5 | 14 | PDB header:transferase Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase
16 | d1hyva_ |
|  | 98.5 | 10 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
17 | c3l2tB_ |
|  | 98.3 | 13 | PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)
18 | c3hosA_ |
|  | 97.4 | 11 | PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
19 | c3v4gA_ |
|  | 95.4 | 14 | PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6
20 | c1u78A_ |
|  | 94.6 | 11 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
21 | d1aoya_ |
| not modelled | 93.8 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
22 | c1b4aA_ |
| not modelled | 93.2 | 16 | PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
23 | c3ereD_ |
| not modelled | 92.1 | 17 | PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
24 | c6paxA_ |
| not modelled | 92.0 | 12 | PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
25 | d1pdnc_ |
| not modelled | 87.1 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain
26 | d1b4aa1 |
| not modelled | 86.6 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
27 | d2p5ka1 |
| not modelled | 86.2 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
28 | d1f9na1 |
| not modelled | 85.6 | 18 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
29 | c3mwmA_ |
| not modelled | 84.3 | 19 | PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur
30 | c2o03A_ |
| not modelled | 83.4 | 17 | PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator
31 | c2o8kA_ |
| not modelled | 83.0 | 17 | PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
32 | c2fe3B_ |
| not modelled | 80.8 | 16 | PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch
33 | c2xigA_ |
| not modelled | 79.6 | 14 | PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites
34 | d1mzba_ |
| not modelled | 79.5 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like
35 | c2w57A_ |
| not modelled | 72.8 | 16 | PDB header:metal transport Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains
36 | c2r0qF_ |
| not modelled | 72.8 | 13 | PDB header:recombination/dna Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3; PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
37 | c3f2kB_ |
| not modelled | 68.3 | 11 | PDB header:transferase Chain: B: PDB Molecule:histone-lysine n-methyltransferase setmar; PDBTitle: structure of the transposase domain of human histone-lysine2 n-methyltransferase setmar
38 | c2fu4B_ |
| not modelled | 66.8 | 16 | PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator)
39 | d1nkua_ |
| not modelled | 64.4 | 23 | Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag)
40 | d1stza1 |
| not modelled | 63.7 | 9 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain
41 | c2jg6A_ |
| not modelled | 62.6 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus
42 | c3eyyA_ |
| not modelled | 56.4 | 19 | PDB header:transport Chain: A: PDB Molecule:putative iron uptake regulatory protein; PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition
43 | c2xzmO_ |
| not modelled | 55.3 | 13 | PDB header:ribosome Chain: O: PDB Molecule:rps13e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
44 | c2f7tA_ |
| not modelled | 46.5 | 11 | PDB header:dna binding protein Chain: A: PDB Molecule:mos1 transposase; PDBTitle: crystal structure of the catalytic domain of mos1 mariner2 transposase
45 | d1u17a1 |
| not modelled | 43.6 | 8 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
46 | c1hlvA_ |
| not modelled | 42.4 | 20 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:major centromere autoantigen b; PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
47 | d1x8qa_ |
| not modelled | 39.6 | 6 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
48 | d2fi9a1 |
| not modelled | 35.2 | 5 | Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like
49 | d2fvta1 |
| not modelled | 33.8 | 6 | Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like
50 | d1nhpa3 |
| not modelled | 22.6 | 16 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
51 | c2i8bB_ |
| not modelled | 22.3 | 12 | PDB header:viral protein Chain: B: PDB Molecule:minor nucleoprotein vp30; PDBTitle: crystal structure of the c-terminal domain of ebola virus vp30
52 | c3r1fO_ |
| not modelled | 20.8 | 11 | PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis
53 | d1dxla3 |
| not modelled | 20.0 | 10 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
54 | d1ebda3 |
| not modelled | 19.2 | 17 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
55 | c2rpiA_ |
| not modelled | 18.7 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h; PDBTitle: the nmr structure of the submillisecond folding2 intermediate of the thermus thermophilus ribonuclease h
56 | d3grsa3 |
| not modelled | 18.2 | 16 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
57 | d1gesa3 |
| not modelled | 15.2 | 12 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
58 | d1ekja_ |
| not modelled | 15.0 | 16 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
59 | d1pm1x_ |
| not modelled | 14.4 | 9 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
60 | d1lvla3 |
| not modelled | 13.3 | 14 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
61 | c3p9kD_ |
| not modelled | 12.5 | 8 | PDB header:transferase Chain: D: PDB Molecule:caffeic acid o-methyltransferase; PDBTitle: crystal structure of perennial ryegrass lpomt1 complexed with s-2 adenosyl-l-homocysteine and coniferaldehyde
62 | d1y1xa_ |
| not modelled | 12.4 | 9 | Fold:EF Hand-like Superfamily:EF-hand Family:Penta-EF-hand proteins
63 | c2jsoA_ |
| not modelled | 11.6 | 8 | PDB header:signaling protein Chain: A: PDB Molecule:polymyxin resistance protein pmrd; PDBTitle: antimicrobial resistance protein
64 | c3izbO_ |
| not modelled | 11.6 | 16 | PDB header:ribosome Chain: O: PDB Molecule:40s ribosomal protein rps13 (s15p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
65 | d1lpfa3 |
| not modelled | 10.6 | 12 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
66 | d2i52a1 |
| not modelled | 10.4 | 10 | Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like
67 | c3lasA_ |
| not modelled | 10.2 | 11 | PDB header:lyase Chain: A: PDB Molecule:putative carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution
68 | d2coba1 |
| not modelled | 9.9 | 9 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Psq domain
69 | d1v59a3 |
| not modelled | 9.9 | 12 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
70 | d1ixsb1 |
| not modelled | 9.3 | 22 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain
71 | d1aoga3 |
| not modelled | 9.3 | 3 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
72 | d1u3em2 |
| not modelled | 8.9 | 11 | Fold:DNA-binding domain of intron-encoded endonucleases Superfamily:DNA-binding domain of intron-encoded endonucleases Family:DNA-binding domain of intron-encoded endonucleases
73 | c2qv5A_ |
| not modelled | 8.9 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58
74 | c1fpqA_ |
| not modelled | 8.3 | 5 | PDB header:transferase Chain: A: PDB Molecule:isoliquiritigenin 2'-o-methyltransferase; PDBTitle: crystal structure analysis of selenomethionine substituted chalcone o-2 methyltransferase
75 | d1onfa3 |
| not modelled | 8.3 | 14 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
76 | d1ojta3 |
| not modelled | 8.1 | 12 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
77 | c2a5vB_ |
| not modelled | 8.0 | 8 | PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase (carbonate dehydratase) (carbonic PDBTitle: crystal structure of m. tuberculosis beta carbonic anhydrase, rv3588c,2 tetrameric form
78 | c2j89A_ |
| not modelled | 8.0 | 7 | PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
79 | d1ej5a_ |
| not modelled | 7.9 | 20 | Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
80 | d1ixrc1 |
| not modelled | 7.8 | 23 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain
81 | d3lada3 |
| not modelled | 7.6 | 14 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
82 | d1ff3a_ |
| not modelled | 7.4 | 18 | Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase
83 | d1feca3 |
| not modelled | 7.4 | 10 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
84 | d1gkab_ |
| not modelled | 7.3 | 16 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
85 | d1in4a1 |
| not modelled | 7.2 | 18 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain
86 | c2k27A_ |
| not modelled | 7.2 | 13 | PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain
87 | c1ylkA_ |
| not modelled | 7.2 | 4 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein rv1284/mt1322; PDBTitle: crystal structure of rv1284 from mycobacterium tuberculosis in complex2 with thiocyanate
88 | c1fvaA_ |
| not modelled | 7.1 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase
89 | c2e4jA_ |
| not modelled | 7.0 | 10 | PDB header:isomerase Chain: A: PDB Molecule:prostaglandin-h2 d-isomerase; PDBTitle: solution structure of mouse lipocalin-type prostaglandin d2 synthase
90 | c1zgaA_ |
| not modelled | 6.9 | 9 | PDB header:plant protein, transferase Chain: A: PDB Molecule:isoflavanone 4'-o-methyltransferase'; PDBTitle: crystal structure of isoflavanone 4'-o-methyltransferase complexed2 with (+)-6a-hydroxymaackiain
91 | c3g43F_ |
| not modelled | 6.9 | 12 | PDB header:metal binding protein Chain: F: PDB Molecule:voltage-dependent l-type calcium channel subunit PDBTitle: crystal structure of the calmodulin-bound cav1.2 c-terminal2 regulatory domain dimer
92 | c3elkA_ |
| not modelled | 6.8 | 10 | PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator ta0346; PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum
93 | c3klbA_ |
| not modelled | 6.8 | 17 | PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
94 | d1fp2a2 |
| not modelled | 6.6 | 5 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Plant O-methyltransferase, C-terminal domain
95 | c3icrA_ |
| not modelled | 6.4 | 6 | PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a-disulfide reductase; PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
96 | c3eyxB_ |
| not modelled | 6.3 | 14 | PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae
97 | c2a8cE_ |
| not modelled | 6.2 | 5 | PDB header:lyase Chain: E: PDB Molecule:carbonic anhydrase 2; PDBTitle: haemophilus influenzae beta-carbonic anhydrase
98 | c3ucoB_ |
| not modelled | 6.1 | 13 | PDB header:lyase/lyase inhibitor Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: coccomyxa beta-carbonic anhydrase in complex with iodide
99 | c3hhhA_ |
| not modelled | 5.9 | 14 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr family; PDBTitle: crystal structure of transcriptional regulator, a member of padr2 family, from enterococcus faecalis v583