 |
| Job Description | P39836 | | Confidence | 0.69% | Date | Thu Jan 5 12:01:05 GMT 2012 |
| Rank | 49 | Aligned Residues | 79 |
| % Identity | 13% | Template | c3rkoK_ |
| PDB info |
PDB header:oxidoreductase | Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; |
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
|
| Resolution | 3.00 Å |
|
 |
|   |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
L | D | P | F | T | L | T | L | I | T | V | V | L | L | A | S | F | F | P | A | R | G | D | F | V | P | F | F | E | N | L | T | T | A | A | I | A | L | L | F | F | M | H | G | A | K | L | S | R | E | A | I | I | A | G | G | G | H | W | R | L | H | L | W | V | M | C | S | T | F | V | L | F | P | I | L | G | V | L | F |
| Query Conservation |   |
  |   |   |
|   |   |   |
|   |   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|
|
|
|   |   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |   |
|   |   |   |   |   |
|
|   |
|
|
|   |
| . | . | . | . | . | . |   |
|   |   |
|
|
|
|   |
|
|
|   |
|
|
|
|   |
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |
|
|
|
|   |
|
|   |
|
|   |
|
| Template Sequence |   |
L | Q | H | G | L | I | L | A | A | I | L | F | V | L | G | L | T | G | . |
. |
. |
. |
. |
. |
L | V | I | R | R | N | L | L | F | M | L | I | G | L | E | I | M | I | N | A | S | A | L | A | F | V | V | A | G | S | Y | W | G | Q | T | D | G | Q | V | M | Y | I | L | A | I | S | L | A | A | A | E | A | S | I | G | L |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |
|
| B |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
|   |
|   |   |
87 | . | . | 90 | . |
| Predicted Secondary structure |   |
 |  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
| Query Sequence |   |
A | W | W | K | P |
| Query Conservation |   |
  |   |
|   |   |
| Alig confidence |   |
|
|
|
|
|
| Template Conservation |   |
|
|   |
|   |
| Template Sequence |   |
A | L | L | L | Q |
| Template Known Secondary structure |   |
 |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|   |   |
78 | . | 80 | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|