HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/86d55ab126e295af/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/86d55ab126e295af/query.hhm DATE Wed Jan 18 15:47:34 2012 LENG 70 match states, 70 columns in multiple alignment FILT 104 out of 526 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4320 -0.0244 SEQ >ss_pred CCEEEEEEEEEEECCCCEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEC >ss_conf 9626888999986888758698279985699993631246875777988899999877987465886989 >Consensus xxxrxxGxVkxfxxxkGyGFIxxdxxxxdiFxHxsxlxxxxxxxlxxGxxVxfxxxxxxxGxxAxxVxxl >batch____ MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL >UniRef50_A0DXX7(111-185:199) Chromosome undetermined scaffold_69, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0DXX7_PARTE E=3e-05 s/c=0.66 id=26% cov=77% --NRSTGYLKFFDENKNYGFIVMDQDGSDLFVYADDLAKTGisreyLRTAKFGNYIRFTF--------------- >UniRef50_UPI00019088EC(89-157:233) cold shock protein n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI00019088EC E=1e-07 s/c=0.84 id=19% cov=100% -TQRIRCVVEWFDRGLGYGFVKLADRDISAMLHKNALGPVSPYDIWEGDILVCELVEAEKGLSVEKVISI >UniRef50_Q0C0X9(14-82:214) Cold shock DNA-binding membrane protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0X9_HYPNA E=5e-07 s/c=0.80 id=25% cov=99% -SPRQEGHLSGWNEARGFGFLKAVDGGPDAFAHIRAFAKEE-RHIEEGHLYSYQTETDEAGRlRAADIRPI >UniRef50_A1TX65(970-1032:1036) Putative cold-shock DNA-binding domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TX65_MARAV E=3e-06 s/c=0.84 id=22% cov=91% --KRFTGTIKT--KRSTFGFVKVDGRGDEVLFPASSVEDGLWDAMIEGDRVSFSLGYSFNGPVACQI--- >UniRef50_Q4E3J9(201-265:1439) Putative uncharacterized protein n=3 Tax=Trypanosoma RepID=Q4E3J9_TRYCR E=7e-06 s/c=0.79 id=21% cov=94% --ERRRGVVGRFDANYGVGFIRVPEVGEVKFFLDR--VDYGVKEISVGDAVTLKIDHSREYPFAVDIRP- >UniRef50_B1KH88(2-63:203) Cold-shock DNA-binding domain protein n=3 Tax=Shewanella RepID=B1KH88_SHEWM E=8e-08 s/c=0.94 id=27% cov=90% ---KFKGKLVQWDDVKGFGFIQPLGQQTQVFVHIKSFKYQPRRPQLQ-DTVTFTLTKDKQGRETAH---- >UniRef50_Q2RY07(817-881:882) Cold-shock DNA-binding protein family n=2 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RY07_RHORT E=7e-07 s/c=0.85 id=24% cov=94% ---EIRGTVKHYDPIKGRGYIIPDGKGSDILIEKAVLKACGMGRLKKNDRVVVITKDQGGKPVAIDVR-- >UniRef50_C1LZK0(64-128:301) Rna-binding protein lin-28, putative n=1 Tax=Schistosoma mansoni RepID=C1LZK0_SCHMA E=3e-05 s/c=0.76 id=27% cov=91% ------GRIRSFSMTEGFGTIVADFRNMEVFFHQSNVYGISAEQLYPNLPVWFQIRPGVRGLEGYNIQP- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3891 * 3184 826 * * * * * * 1951 * * 1 0 * * * * * * 4765 0 0 S 2 1296 * * 4384 * 4968 * * 4721 5009 * 4932 * * 4991 1729 4399 5018 * * 2 0 * * * * * * 5410 0 0 N 3 5359 * 3111 2007 4519 * * * 3217 * * 4353 5033 3906 4414 4527 2546 4261 * * 3 72 5364 5355 0 * * * 5801 1000 0 K 4 * * * 3630 * * * 5564 1795 4585 * 5398 * * 1013 * 5674 5087 * * 4 0 * * * * * 0 5925 0 1000 M 5 5179 * * * 5404 4999 6167 2081 * 3164 2451 * * 3808 4439 4900 5183 3195 * 3556 5 0 * * * * 0 * 6281 0 1000 T 6 6028 * * 3488 5776 * 4785 5926 2570 5136 * 4656 5576 3653 2762 3626 2209 5289 * 5853 6 0 * * * * * * 6372 0 0 G 7 5117 5857 * * * 117 * * * * * * * * * * 5945 5980 * * 7 0 * * * * * * 6577 0 0 L 8 6941 * * 6579 4956 * 6188 3631 2687 6976 5314 6402 * 6293 2677 5456 1651 2925 * 6310 8 0 * * * * * * 6582 0 0 V 9 * 5009 * * * * * 1899 * 3654 5457 * * * * * * 740 * * 9 0 * * * * * * 6582 0 0 K 10 6720 * 6603 4260 * 5820 5535 5680 962 6809 * 4756 * 4913 3811 4259 3938 3504 * * 10 15 * 6602 * * * * 6597 0 0 W 11 6399 4665 6555 5182 3244 4789 5114 * 4393 * 6414 5185 * 4430 3737 3075 3589 6851 1737 5549 11 22 * 6044 * * 0 * 6592 0 1000 F 12 * 5816 * * 981 * * 5307 * 4329 * * * * * 5464 * 5532 2432 2548 12 29 6580 6710 1585 585 * 0 6569 1000 1000 N 13 * 6569 1526 * 4862 * 4035 4230 3615 5510 * 2029 * 6961 * 3273 * 4898 * * 13 19 6224 * 0 * 0 * 6564 1000 1663 P 14 2769 6523 2831 3471 6645 4307 4814 * 3918 4234 6248 4620 3594 4887 3947 3444 5208 4572 * * 14 30 6986 6307 2322 322 * * 6597 1000 0 E 15 3082 * 2760 2030 6701 4553 * 6199 4439 * * 4360 * 4404 4399 3865 3360 4880 5443 6484 15 0 * * * * * 0 6753 0 1000 K 16 5860 * * 3658 * * 6554 * 1224 6225 * 3947 * 4138 1850 5350 6606 * * 5816 16 14 6688 * 3585 126 0 * 6753 1000 1000 G 17 5661 * 6226 * * 210 * * 5454 * * 5467 * * 6597 4963 6076 * * * 17 15 6620 * 2000 415 * * 6771 1000 0 F 18 * 5742 * * 1247 * 4520 5506 * * * * * * 6186 * * 5810 4653 1241 18 18 6344 * 1000 1000 * * 6874 1000 0 G 19 * * * * * 22 * * * * * * * * * 6064 * * * * 19 0 * * * * * * 6874 0 0 F 20 4953 * * * 383 * * * * 4567 6236 * * * * 6693 4849 5858 6713 3755 20 10 * 7238 * * * * 6877 0 0 I 21 5485 * * * * * * 431 * 3792 * * * * * * * 2609 * * 21 0 * * * * * 0 6880 0 1000 T 22 4527 6581 4987 2880 * 6569 6287 4044 2621 5596 6761 4637 * 4459 3292 4501 2478 3706 * 6129 22 38 * 5274 * * * 0 6880 0 1000 P 23 3876 5570 3936 * 6135 4097 * 4286 6561 5059 5329 5745 2213 5117 3101 3046 3493 3908 * * 23 12 * 6903 * * 928 1076 6868 0 2422 K 24 3750 * 1337 2583 5785 4765 6582 6568 5175 6121 * 3892 3464 5584 * 5106 5325 6365 * * 24 36 6486 6196 1000 1000 493 1788 6882 1000 1964 D 25 4461 * 1343 4054 5329 2668 5702 6814 5044 5885 6250 3930 * 5125 4911 3593 5713 * * * 25 62 4833 7227 460 1874 0 * 6794 2170 2099 G 26 5668 5812 3854 4805 * 1243 5892 5706 6195 6617 6587 4083 5287 4404 4186 3965 3539 5813 * 6609 26 153 5553 3656 0 * 0 * 6876 1650 1000 S 27 5147 * 3389 2722 * 1581 6573 * 4265 6492 * 4930 4012 5702 4375 3102 6384 5257 * * 27 32 6649 6379 1000 1000 0 * 6821 1000 3703 K 28 5109 * 2788 2131 6215 4235 * 4844 3123 * 6238 4399 4566 4694 3158 3740 5041 5441 * * 28 68 6485 4840 2322 322 * 0 6864 1000 1000 D 29 6754 * 1095 2953 * 5975 * * 5489 5110 * 3549 5613 5285 4094 4272 6687 4933 * 4569 29 0 * * * * 0 * 6899 0 2771 V 30 3624 * * * 3833 * * 1635 5897 3505 6392 * * 6495 * * * 1736 * 3343 30 15 * 6566 * * * * 6894 0 0 F 31 * * * * 551 * * * 6362 3117 5366 * * * 4884 * * * 5020 3308 31 38 * 5274 * * 0 * 6884 0 1000 V 32 4502 * * * 1429 * 5004 3235 * 2995 6678 * * * 6180 5834 6816 1879 * * 32 0 * * * * 1427 671 6869 0 1896 H 33 6432 * 4870 5291 4471 5362 534 * * 4775 6194 6563 5308 * 5433 6998 6400 6830 * 5021 33 10 * 7227 * * * 0 6879 0 1472 F 34 3252 6240 5032 4948 3174 * 5858 2209 3923 4275 6428 * * 3269 3837 4065 * 4197 6019 4577 34 0 * * * * 638 1484 6881 0 1862 S 35 4032 6363 4006 4617 * 6335 5551 * 3735 * * 3078 * 5205 3999 1338 3170 * * * 35 24 * 5894 * * * 0 6897 0 1000 A 36 1981 4952 2601 3903 6083 * 6969 4568 6605 5069 6192 3925 * 4794 * 2974 4402 3731 * 6328 36 0 * * * * * 0 6850 0 1611 I 37 5766 * * * 2827 * * 2136 6605 1512 5739 * * * * 6552 * 2313 * 5520 37 62 6861 4915 2000 415 0 * 6850 1000 1611 Q 38 4644 * 3991 2914 5415 6184 4034 5914 2348 4300 * 5043 4431 4815 3741 4591 4501 3355 * 4964 38 78 6669 4553 2585 263 1835 475 6873 1000 2647 S 39 4122 * 2749 4167 4576 2727 5712 6529 2899 6144 4094 3518 4534 5027 3859 4836 5610 6870 * 6117 39 27 * 5751 * * 322 2323 6874 0 3428 N 40 3431 5301 2788 3420 4949 4028 5056 5132 4666 5052 * 3143 5294 4264 3987 4321 5693 4910 6284 4246 40 71 6885 4660 1585 585 483 1814 6898 1000 2100 D 41 4072 6279 3337 3865 * 1361 4238 6599 6010 6045 6452 3921 5426 * 5018 3668 4765 5681 * 6583 41 169 4237 4124 2141 371 967 1034 6881 2316 2943 F 42 3675 6018 6132 4415 3576 5133 5147 4386 * 2717 6087 * 3787 4242 3996 5544 * 3543 4849 2643 42 131 5473 3961 1641 558 647 1468 6889 1673 3630 K 43 6990 * 3392 3113 * 4232 * 5594 3278 5698 6899 5118 4377 5791 1580 4007 5274 4872 * 5322 43 63 6482 4981 2000 415 788 1249 6849 1000 3862 T 44 3993 * 2828 5277 6085 4479 4560 6154 4829 5029 6914 5651 3088 5331 3863 2893 2842 4582 * 4893 44 74 * 4322 * * 199 2954 6865 0 3584 L 45 4868 * * * 5728 * * 2365 * 1012 5952 * 3002 * * 6345 6416 3444 * * 45 43 6906 5549 1000 1000 273 2537 6886 1000 2985 T 46 3557 4539 5352 3223 * 4003 4277 6080 2666 6447 * 4633 5155 3589 3363 3894 4474 4927 5340 5366 46 27 * 5749 * * 438 1933 6894 0 2400 E 47 4250 6672 4277 1698 * * 6236 3857 3217 5521 6820 4987 3089 4681 7148 4697 5534 3291 * * 47 0 * * * * 0 * 6895 0 2110 N 48 5777 * 4921 * 6712 400 6878 * 7100 * * 3263 * * 5486 5211 * * * 6392 48 0 * * * * * * 6894 0 0 Q 49 3625 * 1787 2884 * * 5099 5064 6686 4588 4779 6254 * 2345 6484 4674 3644 7230 * * 49 0 * * * * * * 6894 0 0 E 50 3311 * 5129 3681 * 7046 4629 3620 4157 3744 6378 * 4151 4969 1914 4505 3777 4317 * * 50 14 6686 * 1000 1000 * * 6894 1000 0 V 51 * 6203 * * * * * 2938 * 3340 * * * * * * * 424 * 6399 51 0 * * * * * * 6894 0 0 E 52 5843 6541 * 2241 * * 5633 5164 4010 6457 7076 6443 * 5112 3288 2372 2607 3491 6244 5107 52 0 * * * * * * 6894 0 0 F 53 6763 4293 * * 649 * * * * 4324 6787 * * * * * * 3786 * 2550 53 31 5544 * 2798 224 * * 6894 1598 0 G 54 4629 6662 2319 2083 * 7312 * 4324 4376 4941 * 4414 * 3702 3871 3257 5224 4993 * 5538 54 56 4725 * 2315 324 * * 6894 1889 0 I 55 3623 5307 * 4633 4315 * * 2710 7078 2109 * * 4342 * * 5923 3431 2186 * 4933 55 0 * * * * * * 6894 0 0 E 56 3700 6846 4579 2497 * 2708 5485 3979 4324 * 6944 6149 * 3681 4182 4725 3766 2836 * * 56 36 6202 6505 0 * * * 6894 1487 0 N 57 5035 * 4720 2189 5494 5632 4743 7045 3074 4922 4799 5029 4284 2961 3739 4378 4019 5957 6476 6061 57 40 5867 6617 1641 558 0 * 6894 1568 1000 G 58 6232 * 2796 4666 6682 1919 * * 6470 5218 5181 2920 6145 6160 4602 3034 3430 6433 * 4812 58 25 5882 * 0 * 0 * 6880 1574 1000 P 59 3852 * 2997 2566 6069 4645 6662 6149 3444 * 6131 3697 2906 3629 3922 4832 5498 4757 * * 59 70 4781 6541 2127 375 * * 6894 2468 0 K 60 4593 * 3647 3903 6161 3745 6299 * 1508 * 5575 3602 6610 4191 2504 6110 * * * * 60 37 5292 * 368 2152 0 * 6880 2051 1000 G 61 * * 5115 * * 530 * * 3357 6566 * * * 4778 5051 4173 5705 * 6321 5897 61 46 5006 * 1054 948 * * 6894 2377 0 P 62 5123 * 5827 6392 4375 6418 * 5625 4036 2450 4393 5096 1998 * 2708 6865 4219 5281 5693 5056 62 138 3450 * 283 2490 * * 6894 3572 0 A 63 5271 5002 * 3833 5408 * 5582 5582 2587 * 4962 6235 * 2000 2589 4165 5697 3393 * 6763 63 59 4649 * 1786 494 * * 6894 2244 0 A 64 262 4890 * * * 5630 * 6384 * * * * * * * 5652 6470 3859 * * 64 0 * * * * * * 6880 0 0 V 65 2915 5374 5747 4087 4803 6648 6835 3038 3486 4433 6759 * * 6287 6062 4423 3767 1905 * 5067 65 0 * * * * * * 6867 0 0 H 66 3757 * 2266 3180 * * 4842 * 3782 * * 1817 * 4297 3757 5207 4230 * 6479 * 66 0 * * * * * * 6852 0 0 V 67 * * * * * * * 1872 * 4781 * * * * * * 6438 559 * * 67 0 * * * * * * 6846 0 0 V 68 5956 6499 * 5145 5159 * 4727 3062 3628 4070 * * * 4548 2029 4844 2423 3190 * * 68 0 * * * * * * 6623 0 0 A 69 3550 * 6407 4084 * 4492 * 2729 3420 3262 * 6305 2379 * 4306 3976 5935 3113 * * 69 0 * * * * * * 6504 0 0 L 70 * * * * * * * 1915 * 991 4531 * * * * * * 2408 * * 70 0 * * 0 * * * 6179 0 0 //