BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (351 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=... 405 e-112 UniRef50_B0TQD1 DNA polymerase IV n=7 Tax=Bacteria RepID=DPO4_SHEHH 402 e-111 UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms R... 373 e-102 UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gam... 353 5e-96 UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_L... 335 2e-90 UniRef50_Q3II35 DNA polymerase IV n=3 Tax=Alteromonadales RepID=... 329 7e-89 UniRef50_A0YE03 DNA polymerase IV n=2 Tax=Gammaproteobacteria Re... 325 1e-87 UniRef50_C5BNY2 DNA polymerase IV n=1 Tax=Teredinibacter turnera... 321 3e-86 UniRef50_B0TZS5 DNA polymerase IV n=14 Tax=Francisella RepID=DPO... 320 4e-86 UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_P... 317 5e-85 UniRef50_B6J224 DNA polymerase IV n=5 Tax=Coxiella burnetii RepI... 316 7e-85 UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae b... 314 3e-84 UniRef50_Q1N612 DNA polymerase IV n=1 Tax=Bermanella marisrubri ... 311 2e-83 UniRef50_A4BJD8 DNA polymerase IV n=1 Tax=Reinekea blandensis ME... 304 3e-81 UniRef50_A3NBC4 DNA polymerase IV n=15 Tax=pseudomallei group Re... 303 9e-81 UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidet... 283 6e-75 UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damag... 283 7e-75 UniRef50_A6DIV6 DNA polymerase IV n=1 Tax=Lentisphaera araneosa ... 266 9e-70 UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. ... 263 5e-69 UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria R... 263 6e-69 UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms Re... 263 7e-69 UniRef50_UPI0000397F7C COG0389: Nucleotidyltransferase/DNA polym... 262 1e-68 UniRef50_C8Q3E7 Damage inducible protein P (DNA polymerase IV) (... 262 2e-68 UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_H... 259 7e-68 UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=... 258 2e-67 UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42... 258 2e-67 UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_C... 258 3e-67 UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacte... 258 3e-67 UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatel... 257 6e-67 UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 254 4e-66 UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica... 253 6e-66 UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae Rep... 251 3e-65 UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_L... 250 6e-65 UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=... 249 1e-64 UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacter... 247 6e-64 UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibri... 246 9e-64 UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 246 1e-63 UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 246 1e-63 UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q... 246 1e-63 UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychroph... 244 4e-63 UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomy... 243 6e-63 UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_... 242 1e-62 UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobac... 242 1e-62 UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcu... 241 3e-62 UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella c... 240 7e-62 UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 238 2e-61 UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4... 235 1e-60 UniRef50_Q5QZ82 DinP n=2 Tax=Idiomarina RepID=Q5QZ82_IDILO 235 2e-60 UniRef50_C5RD20 DNA-directed DNA polymerase n=1 Tax=Weissella pa... 234 3e-60 UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 233 9e-60 UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_... 231 2e-59 UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteri... 229 2e-58 UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonel... 228 2e-58 UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiri... 228 3e-58 UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alke... 226 8e-58 UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermo... 225 2e-57 UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter... 223 8e-57 UniRef50_B3QD61 DNA-directed DNA polymerase n=6 Tax=cellular org... 221 4e-56 UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DP... 219 1e-55 UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 219 2e-55 UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteob... 218 3e-55 UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalob... 216 7e-55 UniRef50_UPI00019102E2 DNA polymerase IV n=4 Tax=cellular organi... 216 1e-54 UniRef50_C0ZB00 DNA polymerase IV n=1 Tax=Brevibacillus brevis N... 213 9e-54 UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 154... 212 1e-53 UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=u... 212 2e-53 UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium o... 212 2e-53 UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 211 4e-53 UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli ... 210 6e-53 UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2... 209 1e-52 UniRef50_B5BUV5 DNA polymerase kappa n=2 Tax=Agaricales RepID=B5... 208 2e-52 UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteob... 208 2e-52 UniRef50_B1MZW7 Nucleotidyltransferase/DNA polymerase involved i... 207 5e-52 UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales... 207 5e-52 UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class... 207 5e-52 UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral t... 206 9e-52 UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicro... 205 2e-51 UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0... 204 3e-51 UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus M... 204 5e-51 UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomyceta... 204 6e-51 UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis... 202 2e-50 UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex de... 201 5e-50 UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=... 200 7e-50 UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=... 200 8e-50 UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacil... 199 1e-49 UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdema... 199 1e-49 UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaprote... 198 3e-49 UniRef50_Q03R40 Nucleotidyltransferase/DNA polymerase for DNA re... 197 4e-49 UniRef50_A2FMN4 ImpB/MucB/SamB family protein n=1 Tax=Trichomona... 196 7e-49 UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=... 196 1e-48 UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=... 196 1e-48 UniRef50_UPI000180C22E PREDICTED: similar to polymerase (DNA dir... 195 2e-48 UniRef50_D1JEL0 DNA polymerase IV n=1 Tax=uncultured archaeon Re... 194 3e-48 UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=V... 193 7e-48 UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria Re... 193 9e-48 UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteri... 192 1e-47 UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella p... 192 1e-47 UniRef50_B9X9L4 DNA-directed DNA polymerase n=3 Tax=Verrucomicro... 191 2e-47 UniRef50_A4VCZ3 DNA polymerase IV / kappa n=1 Tax=Tetrahymena th... 191 4e-47 UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospiri... 190 5e-47 UniRef50_B3WC63 DNA-damage-inducible protein P n=8 Tax=Lactobaci... 190 5e-47 UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2... 190 6e-47 UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomyceta... 190 7e-47 UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class... 190 8e-47 UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter h... 190 8e-47 UniRef50_Q2LU75 DNA polymerase IV n=1 Tax=Syntrophus aciditrophi... 189 1e-46 UniRef50_Q5Q9H0 Polymerase kappa isoform 9 n=3 Tax=Murinae RepID... 189 1e-46 UniRef50_D1HMR5 Whole genome shotgun sequence of line PN40024, s... 189 1e-46 UniRef50_Q654Y6 Os06g0691000 protein n=7 Tax=Poaceae RepID=Q654Y... 189 2e-46 UniRef50_B0D0P7 Predicted protein n=1 Tax=Laccaria bicolor S238N... 188 3e-46 UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2... 187 6e-46 UniRef50_B9HS71 Predicted protein n=1 Tax=Populus trichocarpa Re... 187 7e-46 UniRef50_Q5K8U2 Putative uncharacterized protein n=3 Tax=Agarico... 186 8e-46 UniRef50_D2VFM3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 186 9e-46 UniRef50_A5EBX2 DNA polymerase IV (Pol IV 3) n=2 Tax=Bradyrhizob... 186 1e-45 UniRef50_UPI0001982DE6 PREDICTED: hypothetical protein n=1 Tax=V... 186 2e-45 UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved i... 184 4e-45 UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermoth... 184 4e-45 UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus... 184 5e-45 UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicu... 184 5e-45 UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_T... 183 1e-44 UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria Re... 182 1e-44 UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved i... 182 1e-44 UniRef50_D0MYB5 DNA polymerase kappa, putative n=1 Tax=Phytophth... 182 2e-44 UniRef50_C7DHN7 DNA-directed DNA polymerase n=1 Tax=Candidatus M... 181 2e-44 UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved i... 181 2e-44 UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclass... 181 2e-44 UniRef50_B7P2Q3 DNA polymerase IV / kappa, putative n=1 Tax=Ixod... 181 2e-44 UniRef50_A0D236 Chromosome undetermined scaffold_35, whole genom... 181 3e-44 UniRef50_A9BNM1 DNA-directed DNA polymerase n=34 Tax=Betaproteob... 181 4e-44 UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter... 181 5e-44 UniRef50_C1E418 Predicted protein (Fragment) n=2 Tax=Micromonas ... 180 5e-44 UniRef50_Q4D5I0 DNA polymerase kappa, putative n=4 Tax=Trypanoso... 179 1e-43 UniRef50_A3EWL3 Polymerase ATREV1-1105 n=8 Tax=rosids RepID=A3EW... 179 1e-43 UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia ext... 179 2e-43 UniRef50_C3Y6K1 Putative uncharacterized protein (Fragment) n=1 ... 179 2e-43 UniRef50_Q4P422 Putative uncharacterized protein n=1 Tax=Ustilag... 179 2e-43 UniRef50_A2DLM9 ImpB/MucB/SamB family protein n=1 Tax=Trichomona... 178 2e-43 UniRef50_UPI0001B7B957 DinB1 protein n=3 Tax=Euteleostomi RepID=... 178 2e-43 UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales R... 178 2e-43 UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacte... 177 4e-43 UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved i... 177 5e-43 UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collins... 177 6e-43 UniRef50_O74944 DNA polymerase kappa n=1 Tax=Schizosaccharomyces... 177 6e-43 UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevi... 176 9e-43 UniRef50_B1AJ79 DNA polymerase IV n=15 Tax=Ureaplasma RepID=DPO4... 176 1e-42 UniRef50_A8PXZ2 Putative uncharacterized protein n=1 Tax=Malasse... 176 2e-42 UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus ... 175 2e-42 UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bi... 175 2e-42 UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiop... 174 3e-42 UniRef50_B8M4C5 DNA-directed polymerase kappa, putative n=14 Tax... 174 4e-42 UniRef50_A8IAM0 DNA polymerase kappa (Fragment) n=1 Tax=Chlamydo... 174 5e-42 UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidoba... 174 5e-42 UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidete... 173 7e-42 UniRef50_D2JWS9 Putative DNA-directed polymerase kappa n=1 Tax=F... 173 8e-42 UniRef50_P34409 DNA polymerase kappa n=6 Tax=Chromadorea RepID=P... 172 1e-41 UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostri... 172 1e-41 UniRef50_A9UNE7 GH11153p (Fragment) n=8 Tax=Drosophila RepID=A9U... 172 2e-41 UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_S... 172 2e-41 UniRef50_Q7Q6B2 AGAP005939-PA n=2 Tax=Culicidae RepID=Q7Q6B2_ANOGA 172 2e-41 UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collins... 172 2e-41 UniRef50_D1Y4D1 DNA polymerase IV n=1 Tax=Pyramidobacter piscole... 172 2e-41 UniRef50_D2A3T9 Putative uncharacterized protein GLEAN_14950 n=1... 171 3e-41 UniRef50_B6Q7Y5 DNA-directed polymerase kappa, putative n=2 Tax=... 171 3e-41 UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A... 171 5e-41 UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaeroc... 171 5e-41 UniRef50_UPI000186DDA3 terminal deoxycytidyl transferase rev1, p... 170 6e-41 UniRef50_A7REV5 Predicted protein (Fragment) n=1 Tax=Nematostell... 169 9e-41 UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DP... 169 1e-40 UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=D... 169 1e-40 UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus... 169 2e-40 UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteri... 169 2e-40 UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium... 168 3e-40 UniRef50_C7N9E0 DNA-directed DNA polymerase n=5 Tax=Fusobacteria... 168 3e-40 UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiale... 168 3e-40 UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothri... 167 4e-40 UniRef50_A9V4K7 Predicted protein n=1 Tax=Monosiga brevicollis R... 167 4e-40 UniRef50_B9XRF0 DNA polymerase III, alpha subunit n=1 Tax=bacter... 167 5e-40 UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomyceta... 167 6e-40 UniRef50_Q4Q8C4 DNA polymerase kappa, putative (Dna polymerase i... 167 6e-40 UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerof... 166 1e-39 UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia deni... 165 2e-39 UniRef50_B9LT67 UMUC domain protein DNA-repair protein n=3 Tax=H... 165 2e-39 UniRef50_D2R9L6 ImpB/MucB/SamB family protein n=1 Tax=Gardnerell... 165 2e-39 UniRef50_D0A851 DNA polymerase kappa, putative n=17 Tax=Trypanos... 165 2e-39 UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax... 164 4e-39 UniRef50_Q47E66 UMUC-like DNA-repair protein n=2 Tax=Betaproteob... 164 4e-39 UniRef50_A7SBP1 Predicted protein (Fragment) n=1 Tax=Nematostell... 164 6e-39 UniRef50_B3RS03 Putative uncharacterized protein n=1 Tax=Trichop... 163 8e-39 UniRef50_Q2L7B2 REV1 n=7 Tax=Sordariomycetes RepID=Q2L7B2_NEUCR 163 9e-39 UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 163 9e-39 UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostri... 163 1e-38 UniRef50_Q5Q9G7 Polymerase kappa isoform 2 n=34 Tax=Deuterostomi... 163 1e-38 UniRef50_Q9UBT6 DNA polymerase kappa n=23 Tax=Tetrapoda RepID=PO... 162 1e-38 UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimal... 162 1e-38 UniRef50_B8P0X5 Predicted protein (Fragment) n=1 Tax=Postia plac... 162 1e-38 UniRef50_Q29DW0 GA11465 n=3 Tax=Drosophila RepID=Q29DW0_DROPS 161 3e-38 UniRef50_UPI0000D56959 PREDICTED: similar to DNA polymerase iota... 161 4e-38 UniRef50_B6K5W3 DNA polymerase kappa n=2 Tax=cellular organisms ... 160 4e-38 UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_... 160 5e-38 UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttle... 160 6e-38 UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ... 160 7e-38 UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutyl... 160 1e-37 UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia R... 159 1e-37 UniRef50_B4MLB6 GK17515 n=1 Tax=Drosophila willistoni RepID=B4ML... 159 1e-37 UniRef50_C1DYT2 Predicted protein (Fragment) n=2 Tax=Micromonas ... 159 1e-37 UniRef50_Q8TIW3 DNA polymerase IV n=4 Tax=Methanosarcinaceae Rep... 159 1e-37 UniRef50_D1BHR1 Nucleotidyltransferase/DNA polymerase involved i... 159 1e-37 UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdema... 159 2e-37 UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomyceta... 159 2e-37 UniRef50_Q54KS3 UMUC-like DNA-repair protein n=1 Tax=Dictyosteli... 159 2e-37 UniRef50_UPI0001C32444 DNA-directed DNA polymerase n=1 Tax=Conex... 158 3e-37 UniRef50_A9UXX3 Predicted protein (Fragment) n=2 Tax=Eukaryota R... 158 3e-37 UniRef50_B6HNR2 Pc21g13870 protein n=17 Tax=Leotiomyceta RepID=B... 157 4e-37 UniRef50_A9A3A9 DNA polymerase IV n=6 Tax=Thaumarchaeota RepID=D... 157 5e-37 UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42... 157 5e-37 UniRef50_D0NDK9 DNA repair protein REV1 n=1 Tax=Phytophthora inf... 157 7e-37 UniRef50_A5BB36 Putative uncharacterized protein n=1 Tax=Vitis v... 156 8e-37 UniRef50_A5Z8E0 Putative uncharacterized protein n=10 Tax=Clostr... 156 1e-36 UniRef50_Q9UBZ9 DNA repair protein REV1 n=27 Tax=Tetrapoda RepID... 156 1e-36 UniRef50_B3RQD9 Putative uncharacterized protein n=1 Tax=Trichop... 155 2e-36 UniRef50_A8EUX3 DNA polymerase IV n=1 Tax=Arcobacter butzleri RM... 155 2e-36 UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesti... 155 2e-36 UniRef50_UPI00016E76F4 UPI00016E76F4 related cluster n=1 Tax=Tak... 155 3e-36 UniRef50_Q4KWZ7 REV1 protein n=9 Tax=Euteleostomi RepID=Q4KWZ7_C... 154 3e-36 UniRef50_B3RPL1 Putative uncharacterized protein (Fragment) n=1 ... 154 3e-36 UniRef50_Q7NAR2 UmuC/DinP-like n=1 Tax=Mycoplasma gallisepticum ... 154 4e-36 UniRef50_C5JS23 DNA damage repair protein Mus42 n=2 Tax=Ajellomy... 154 4e-36 UniRef50_UPI000180D06B PREDICTED: similar to GH15415 n=1 Tax=Cio... 154 6e-36 UniRef50_UPI0000D862D7 hypothetical protein CIMG_01093 n=1 Tax=C... 154 7e-36 UniRef50_C0S277 DNA polymerase IV n=5 Tax=Onygenales RepID=C0S27... 153 7e-36 UniRef50_C4G2M8 Putative uncharacterized protein n=1 Tax=Abiotro... 153 8e-36 UniRef50_B2VS10 DNA polymerase IV n=3 Tax=Pleosporineae RepID=B2... 153 9e-36 UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacte... 153 1e-35 UniRef50_B1ZN03 DNA polymerase IV n=2 Tax=Opitutaceae RepID=DPO4... 153 1e-35 UniRef50_A9NFG9 DNA polymerase IV n=1 Tax=Acholeplasma laidlawii... 152 1e-35 UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteri... 152 1e-35 UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiale... 152 2e-35 UniRef50_UPI0000DB6FEF PREDICTED: similar to DNApol- CG7602-PA, ... 152 2e-35 UniRef50_C7MBE5 Nucleotidyltransferase/DNA polymerase involved i... 151 3e-35 UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxoba... 151 4e-35 UniRef50_B7QCT1 Terminal deoxycytidyl transferase rev1, putative... 150 5e-35 UniRef50_Q2LSC9 Nucleotidyltransferase/DNA polymerase protein n=... 150 6e-35 UniRef50_A4YEC1 DNA polymerase IV n=18 Tax=Sulfolobaceae RepID=D... 150 6e-35 UniRef50_A4RZX2 Predicted protein (Fragment) n=2 Tax=Ostreococcu... 150 6e-35 UniRef50_B0R4P0 DNA polymerase IV n=7 Tax=Halobacteriaceae RepID... 150 7e-35 UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranu... 150 8e-35 UniRef50_Q2SS65 ImpB/MucB/SamB family protein n=3 Tax=Mycoplasma... 148 2e-34 UniRef50_A7E7M1 Putative uncharacterized protein n=2 Tax=Sclerot... 148 3e-34 UniRef50_C3WGR0 DNA polymerase IV n=6 Tax=Fusobacterium RepID=C3... 148 3e-34 >UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=DPO4_SHEWM Length = 364 Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust. Identities = 202/338 (59%), Positives = 248/338 (73%), Gaps = 1/338 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMDC+FAAVEMRD P LR PIA+GG +RRGVIST NY AR FGVRSAM +G Sbjct: 5 LRKIIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARAFGVRSAMASG 64 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLCP L L+PGR YKE S IR+IF+RYT IEPLSLDEAYLDVT+ C GSAT Sbjct: 65 YALKLCPDLILVPGRMSVYKEVSAQIRDIFARYTDLIEPLSLDEAYLDVTECKQCQGSAT 124 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIAQ IRQ IF LTASAG+APVKFLAK+ASD+NKPNGQ+VITP + +F+ TLPL K Sbjct: 125 LIAQAIRQEIFEVTGLTASAGIAPVKFLAKVASDLNKPNGQYVITPDMISSFITTLPLTK 184 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KLE +GL TCG++Q L++RFGKFG+IL ER+QGIDER ++ R R Sbjct: 185 IPGVGKVTGKKLEDIGLTTCGELQAYPKSELIERFGKFGKILIERAQGIDERAISPHRER 244 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVGVE T+A+DI+ +C ++ +L EL R+++ I +Q VKLKF+DF+QTT Sbjct: 245 KSVGVETTLAKDIYTLEQCHGVMPQLIQELGARMSRSAKGRSINKQVVKLKFNDFKQTTI 304 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTL 338 EH ++ L ER+ GRG+RL+G+ V L Sbjct: 305 EHRSDEMS-VKLFYELLAQSLERQQGRGIRLLGVSVGL 341 >UniRef50_B0TQD1 DNA polymerase IV n=7 Tax=Bacteria RepID=DPO4_SHEHH Length = 358 Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/338 (59%), Positives = 248/338 (73%), Gaps = 1/338 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+KIIHVDMDCF+AAVEMRD P LR PIA+GG +RRGVIST NY AR+FGVRSAM +G Sbjct: 1 MQKIIHVDMDCFYAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARQFGVRSAMASG 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLCP L L+PGR YKE SN IR +F RYT IEPLSLDEAYLDVT+S HC GSAT Sbjct: 61 YALKLCPDLILVPGRMQVYKEVSNQIRAVFERYTDLIEPLSLDEAYLDVTESSHCKGSAT 120 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A+ IR I E LTASAG+APVKFLAKIASD+NKPNGQ+VI P + F++TLPL K Sbjct: 121 LMAEAIRAEILAETGLTASAGIAPVKFLAKIASDLNKPNGQYVIRPEMIEEFVKTLPLIK 180 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+A KL +GL TC D+Q L++RFGKFG +L ERS+GID+R + R R Sbjct: 181 IPGVGKVTAKKLADLGLHTCSDIQAYPEPKLVERFGKFGSVLIERSKGIDKRAILPNRER 240 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVGVE T+A+DIH +C A++ +L EL R+++ D I +Q VKLKF+DF+QTT Sbjct: 241 KSVGVETTLAKDIHTLEQCRAVMPQLIQELGARVSRSAKDRAINKQVVKLKFEDFKQTTI 300 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTL 338 EH ++ +L + ER+ RG+RL+G+ V L Sbjct: 301 EHRSDEIS-VNLFYQLLEQAMERQHERGIRLLGVSVGL 337 >UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms RepID=DPO4_ACTPJ Length = 356 Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/351 (54%), Positives = 238/351 (67%), Gaps = 4/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMDCF+AA+EMR+NPAL P+A+GGS E RGV++T NY ARKFG+ SAMPT Sbjct: 5 RKIIHIDMDCFYAAIEMRENPALIGKPVAVGGSVEGRGVLTTCNYEARKFGLHSAMPTAQ 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALK CP+L L+P YK S I +IF RYT +EPLSLDEAYLDVTD C GSAT Sbjct: 65 ALKRCPNLILVPVNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVTDCRQCSGSATW 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQEIR I+NEL LTASAG+AP+KFLAKI SD NKPNGQFVI+P + AF+ LPL KI Sbjct: 125 IAQEIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQFVISPENMTAFIYDLPLKKI 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ KL +GL TCGD+Q D + K FGKFG+ LWE S ID R + + R RK Sbjct: 185 PGVGKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQRLWEFSHAIDNRKIEANRPRK 244 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI---ARQGVKLKFDDFQQT 298 S+ VE T+ DI H +E E I++ L+ +L RL + + + + +KLKF DF QT Sbjct: 245 SLAVENTLPTDIWHLAEAEQIVDELFKKLVFRLQRNWGERSLQEFKKLAIKLKFGDFTQT 304 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T E L++ I ++ W +R R VRL+GL V ++++QL L Sbjct: 305 TLERTTDGLSRERFIELLQQVW-QRTNRRSVRLIGLSVHYPTEKVKKQLNL 354 >UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R7_9GAMM Length = 359 Score = 353 bits (906), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 186/355 (52%), Positives = 241/355 (67%), Gaps = 9/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVD D F+A+VEMR++P+L P+A+GGS +RRGVI+T NY ARKFGVRSAMP+ Sbjct: 4 RKIIHVDADSFYASVEMREDPSLAARPVAVGGSAQRRGVIATCNYEARKFGVRSAMPSSR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP L +L RFD Y+E S +IF YT +IEPLSLDEAYLDV+D HGSATL Sbjct: 64 ALQLCPGLIILSARFDLYREVSQQFHQIFKDYTDKIEPLSLDEAYLDVSDCEQFHGSATL 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IR+ I EL LT SAGVAP KFLAK+ SD +KP+G F ITP +V F+ LP+++I Sbjct: 124 IAQDIRRRIKQELNLTVSAGVAPNKFLAKVGSDWDKPDGCFTITPEDVAEFVVDLPVSRI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V+AAKLE +G TCG++Q L +L+KRFGK+G L + + G+D+RDV + R RK Sbjct: 184 NGVGAVTAAKLEKLGATTCGELQSIPLEVLVKRFGKYGSRLAKVAHGLDDRDVQTSRTRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ VE T DI + + + RL ELE R K++ ++ VK+KFD+F+QTT E Sbjct: 244 SISVENTYHSDIEQLQQMDQALTRLLDELEGRFHKIEERYRPHKRFVKVKFDNFEQTTIE 303 Query: 302 HVWPR-----LNKADLIATARKTWDERRGGRGVRLV--GLHVTLLDPQMERQLVL 349 + P LN+ A W +RG R VRL+ GL + L +ME QLVL Sbjct: 304 EIIPDSGEHWLNEKAYHALLHSAW--QRGSRPVRLLGAGLRLEPLHKEMEMQLVL 356 >UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_LEGPL Length = 355 Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 178/340 (52%), Positives = 230/340 (67%), Gaps = 6/340 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMDCF+AA+EMRD P L + PIA+GG + RGVI+T NY AR+FG+RSAMPT Sbjct: 4 IRKIIHIDMDCFYAAIEMRDFPELANKPIAVGGDAKHRGVIATCNYAARQFGIRSAMPTA 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLC L L P R D Y++ S +IR + + YT IEPLSLDEAYLDVT+S C GSAT Sbjct: 64 HALKLCRELILRPVRMDVYQKESQYIRSLLTEYTDLIEPLSLDEAYLDVTESTQCQGSAT 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EIR I+ QLTASAG+AP K LAKIASD +KPNGQ VI P +V AF+ LP+ K Sbjct: 124 WIAEEIRARIYQTRQLTASAGIAPNKSLAKIASDWHKPNGQMVIRPEDVSAFVLDLPVRK 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG KL A+ ++TC D+Q+ + LL++FG G+ L+E ++GID R VN ER+R Sbjct: 184 LFGVGPKMEEKLGALNIKTCADLQRYSIEYLLQKFGTMGQRLYELARGIDNRPVNPERIR 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ VE T +D+ + C A++ L LE R+ + I VKLKF+DFQQTT Sbjct: 244 KSISVEETYPKDLPNSEACLAVLPDLMARLEARIQRAGKISGIHNLFVKLKFNDFQQTTI 303 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRG--VRLVGLHVTL 338 E V ++K DLI R+ E RG VRL+G+ + L Sbjct: 304 ERV---MDKIDLIVL-RQLIQEGFARRGMPVRLLGIGIKL 339 >UniRef50_Q3II35 DNA polymerase IV n=3 Tax=Alteromonadales RepID=DPO4_PSEHT Length = 351 Score = 329 bits (844), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 176/348 (50%), Positives = 230/348 (66%), Gaps = 3/348 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+K IH+DMDCF+AAVEMRDNP L ++P+AIGG+ RRGV+STANY AR++GVRSAM Sbjct: 1 MKKFIHIDMDCFYAAVEMRDNPKLANVPLAIGGN-SRRGVLSTANYIAREYGVRSAMSNY 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L ++PGR YK+ S IR +FSRYT IEPLSLDEAYLDVT S C GSAT Sbjct: 60 HAKQLCPDLVIVPGRMAVYKDVSTQIRAVFSRYTDLIEPLSLDEAYLDVTHSEQCKGSAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIAQ+IR I+N LTASAG+AP+KF+AKIASD NKPNGQFV+ P +V AFL LPL K Sbjct: 120 LIAQQIRADIYNATGLTASAGIAPIKFIAKIASDENKPNGQFVVLPDQVDAFLAQLPLGK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KL GL T DV+K + + + G FG L+++ G V++ER+R Sbjct: 180 IPGVGKVTLEKLNLKGLYTGQDVRKKGVNWMQQHVGNFGVSLYQKCAGEHIGRVSTERVR 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ VE T + + EC + L EL RL K + + + VK+KF +F T+ Sbjct: 240 KSLSVEHTYEYNKNSLQECLEQLPSLLEELTTRLNKQQLQNQVNKLSVKVKFANFVVTSA 299 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD-PQMERQL 347 + +LN +D+ + +R + VRL+G+ V + + PQ QL Sbjct: 300 DQAHQQLN-SDIFSELLAKAYQRGLQQPVRLLGIGVGIKNQPQHNLQL 346 >UniRef50_A0YE03 DNA polymerase IV n=2 Tax=Gammaproteobacteria RepID=A0YE03_9GAMM Length = 388 Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 174/358 (48%), Positives = 231/358 (64%), Gaps = 11/358 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH D DCFF AVEMRD+P+L P+A+GGS +RRGVIST NY AR +GV SAM T Sbjct: 29 RKIIHCDADCFFVAVEMRDDPSLFGRPVAVGGSADRRGVISTCNYEARAYGVGSAMATAT 88 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP L +L G + YK A++ +R IF Y++ +EPLSLDEAY+DVT S CHGSATL Sbjct: 89 ARRLCPDLIVLSGNMEKYKLAASQMRTIFCEYSTLVEPLSLDEAYIDVTGSDACHGSATL 148 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIRQ + + +T SAGVAP KFLAKI SD NKPNG VI PA V AF+Q +P+ ++ Sbjct: 149 IAEEIRQRVKESVGITLSAGVAPNKFLAKIGSDWNKPNGLCVIPPARVDAFVQAMPVDRL 208 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A +L MG++TCGD++ + L +RFG FG L++ S+GID+R V + R+RK Sbjct: 209 FGVGKVTAERLHRMGIQTCGDLRAFSIFQLSERFGSFGSRLYDLSRGIDDRAVKTGRIRK 268 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPD-----LLIARQGVKLKFDDFQ 296 S+ VE T D+ C + L+ +L RL + + +Q +K+KF++FQ Sbjct: 269 SLSVEHTFPSDLSAIDSCLEQLPDLFDQLTTRLQTLNDQSKGAAYRVNKQFIKIKFNNFQ 328 Query: 297 QTTQEHVWPRLNKADLIATARKTWDE---RRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 TT E + + A IA R+ E R G VRL+GL V DP + + L L Sbjct: 329 STTMECI---VAGAPRIAIFRELCRESILRGDGLAVRLMGLGVRFQDPACDGAVQLSL 383 >UniRef50_C5BNY2 DNA polymerase IV n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BNY2_TERTT Length = 360 Score = 321 bits (822), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 170/343 (49%), Positives = 225/343 (65%), Gaps = 6/343 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DCFFAA+E+R+NP L D P+A+GG RRGVIST NY AR++GV SAMP+ Sbjct: 6 RKIIHLDADCFFAALEIRENPDLADFPLAVGGDPGRRGVISTCNYLARQYGVHSAMPSAH 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP L + F YK+ S + EIF+R++ +IEPLSLDEA+LDV+D HGSATL Sbjct: 66 AKRLCPELVIRSSNFPLYKQVSAQMFEIFTRFSEKIEPLSLDEAFLDVSDCQQFHGSATL 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR+ + EL +T SAGVAP+KFLAKIASD +KPNG F +TP +V F++ LPL K+ Sbjct: 126 IAREIRRQVETELGITVSAGVAPIKFLAKIASDWSKPNGLFTVTPDKVTEFVKDLPLQKL 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ KL GL C D++ L++RFG+FG L S GIDER+V S R RK Sbjct: 186 PGVGKVTREKLAREGLLYCRDLESYSEHELVQRFGRFGANLKRMSVGIDEREVKSSRERK 245 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ +E T A DI E I++L LE R K++ + ++++ VKLKFDDF QTT E Sbjct: 246 SLSIETTFARDISSPGEIADQIDQLVVGLEERYNKLQRKVAVSKKFVKLKFDDFTQTTLE 305 Query: 302 HVWPRLNK----ADLIATARKTWDERRGGRGVRLVGLHVTLLD 340 R K + W R R +RL+G+ ++ + Sbjct: 306 SSVSRCGKIFSSQEFERMCYAAWA--RQKRPLRLLGVGLSFAE 346 >UniRef50_B0TZS5 DNA polymerase IV n=14 Tax=Francisella RepID=DPO4_FRAP2 Length = 350 Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 172/353 (48%), Positives = 230/353 (65%), Gaps = 14/353 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD FFA VE + NP+L+D P A+GG+ +RGVIST NY AR++GVRSAMPT + Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++ CP+L LL F YK S IR+IF +T ++EPLSLDEAYLDVTD SATL Sbjct: 65 AMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYLDVTDVKEYKNSATL 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I+Q IFN+ LT SAGVAP K LAKIASD+NKPNG +VITP +V +F++ LP+ K+ Sbjct: 125 IAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVDSFVKDLPVKKL 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKVS KL+ M + TC D+Q+ L L+ +FGKFG L+ ++GID R+VN R+RK Sbjct: 185 FGVGKVSQEKLKNMNVETCLDLQQLSLATLVDKFGKFGSSLYNYARGIDNREVNPVRIRK 244 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD--FQQTT 299 SV VE T ED+ C + LY +L R+ + +I G+ +KF D F +T+ Sbjct: 245 SVSVENTYLEDLKTLEACLEKLPNLYNKLTSRMTEEHYKSII---GIVVKFTDTKFNKTS 301 Query: 300 QEHVWPRLNK---ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 V L+K +LI ++ +RL+G+ + L + +RQL L Sbjct: 302 LTRVAKTLDKKVLKNLIIELH-----QKQNYHIRLIGIGIKLGEID-DRQLSL 348 >UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_PSEU2 Length = 354 Score = 317 bits (811), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 172/342 (50%), Positives = 223/342 (65%), Gaps = 8/342 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DCF+AA+EMRD P L P+A+GGS ERRGVI+T NY AR +GVRSAM + Sbjct: 4 RKIIHIDCDCFYAAIEMRDEPDLAGKPLAVGGSAERRGVIATCNYEARAYGVRSAMSSRH 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP LT++ R DAYKEAS I IF YT IEPLSLDEA+LDV+++ H GSAT Sbjct: 64 ALKLCPDLTIVKPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVSEAGHFSGSATR 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IR+ + N+L +T SAGVAP KFLAKIASD KPNG FVITP +V F+ +LP+ K+ Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEEFVASLPVTKL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A KL +G+ C D++ + L++ FG FG LW + GID+R V ++ R+ Sbjct: 184 HGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGERLWSLAHGIDDRPVQNDSRRQ 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV VE T D+ + C + L L R+A+++ + VK+KF DF QTT E Sbjct: 244 SVSVENTYDTDLPDLAACLEKLPDLLETLSGRMARMEGQYRPGKPFVKVKFHDFTQTTLE 303 Query: 302 HVWPRLNKAD---LIATARKTWDERRGGRGVRLVGLHVTLLD 340 + L+A A RGG+ VRL+G+ V L D Sbjct: 304 QSGAGRDLGSYEQLLAQAFA-----RGGKPVRLLGIGVRLHD 340 >UniRef50_B6J224 DNA polymerase IV n=5 Tax=Coxiella burnetii RepID=B6J224_COXB2 Length = 372 Score = 316 bits (810), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 172/347 (49%), Positives = 226/347 (65%), Gaps = 4/347 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMDCF+ A+EMRDNP LR+ P+A+GG+ RGVI TANY AR +GV+SA+ + Sbjct: 24 LRKIIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRGVICTANYIARGYGVQSAISSS 83 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCP L +LP + Y+ + IR +F YT +EPLSLDEAYLDV+D GSAT Sbjct: 84 YAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSLDEAYLDVSDCKIHQGSAT 143 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IAQEIR+ I LTASAGVA K LAK+AS NKPNG VI P++ F++TLP+ K Sbjct: 144 RIAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPSKADDFVKTLPIEK 203 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 I GVGK++A K++AM + TC D+Q L K FG FG L+E +GID R V R+R Sbjct: 204 IHGVGKITAQKMKAMNIHTCSDLQALSREALSKSFGSFGVTLYELCRGIDPRSVEPNRIR 263 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSV VE T ++DI SECE + L+ +L++RL K D I +Q VK+KF+DF+ T Sbjct: 264 KSVSVEHTFSQDIATLSECEIELANLFNDLKQRLLK-HTDRCIRKQFVKIKFNDFKITKA 322 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL-DPQMERQ 346 E + ++ DL ER+ + VRL+G+ V+ DP +E Q Sbjct: 323 ETITQTIS-LDLFKHLLYQIFERQ-QKPVRLLGVGVSFSEDPLLELQ 367 >UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKI6_9BACT Length = 361 Score = 314 bits (804), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 170/346 (49%), Positives = 224/346 (64%), Gaps = 11/346 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 +KIIH+DMDCF+AA+E+RD+P LR P+A+GG RRGV++T NY AR FG+ SAMPT Sbjct: 12 QKIIHIDMDCFYAAIEVRDHPELRGEPVAVGGRSSRRGVLTTCNYEARAFGIHSAMPTYQ 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++ CPHL + P RF+ YK S IR IF+ YTS IEPLSLDEAYLDV+ H A+ Sbjct: 72 AMQRCPHLIIKPVRFEVYKNESRRIRAIFADYTSAIEPLSLDEAYLDVS---HLDRPASA 128 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA EIR+ I L ASAG+AP K LAKIASD KPNGQ+ ITP ++ F++ LP++KI Sbjct: 129 IALEIRKRIRQTTGLNASAGIAPNKMLAKIASDWRKPNGQYEITPDQIADFMRELPVSKI 188 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGK SAA+L ++ + TCGD+Q+ + L K FGKFG L+E S+GID RDV S R+RK Sbjct: 189 WGVGKKSAARLASLDIATCGDLQQKTRLELQKHFGKFGSELYELSRGIDHRDVVSNRIRK 248 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ERT A D+H + + ++ EL LA+ K D I + VK K+ DF +T+ E Sbjct: 249 SMSCERTYATDLHSLDDRQQHAADIFQELSADLARFKSDRPIHKLFVKCKYSDFTRTSIE 308 Query: 302 HVWPRLNKA---DLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 A DL+A + R +RL+GL V DP+ + Sbjct: 309 RSGLPFTLASFQDLLAES-----YHRRSDPIRLLGLGVRFTDPETQ 349 >UniRef50_Q1N612 DNA polymerase IV n=1 Tax=Bermanella marisrubri RepID=Q1N612_9GAMM Length = 366 Score = 311 bits (797), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 159/337 (47%), Positives = 219/337 (64%), Gaps = 6/337 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+++HVD DCFFAAVEMRD+P RDIP+AIGGS +RRGVIST NY AR +GVRSAMP+G Sbjct: 3 RQVLHVDCDCFFAAVEMRDSPQYRDIPLAIGGSSDRRGVISTCNYVARAYGVRSAMPSGQ 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP L L+ G + Y+ S + I Y E +S+DEAY++++ H + Sbjct: 63 ALKLCPDLMLIRGDMEKYRRVSREVMSIVESYGLAFEQVSIDEAYIEISP----HSPGKI 118 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IRQ + E+ +T S G+AP K+LAK+ASD NKPNGQFV+ P + F++TLP+ KI Sbjct: 119 IAQQIRQQVEAEIGITVSVGIAPNKYLAKVASDWNKPNGQFVVEPQALNEFVRTLPVGKI 178 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVG SA KL MG+ +C DVQ +L LLKRFG+FG+ L++RS+GID+R +++ R RK Sbjct: 179 PGVGPKSAEKLANMGIHSCADVQAIELADLLKRFGQFGKKLYDRSRGIDDRTLSNGRERK 238 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ VERT A DI E + + + L+ + R+ L VK+KF DFQ TT Sbjct: 239 SLSVERTFANDIESEEELQQVAQDLWLRFQSRIEANAIRLRDVTPFVKVKFADFQVTTLA 298 Query: 302 HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTL 338 + ++ I ++ RR + +RL+G+ L Sbjct: 299 NHQKTVDLDSFIELIQQA--RRRQEKSIRLIGIGARL 333 >UniRef50_A4BJD8 DNA polymerase IV n=1 Tax=Reinekea blandensis MED297 RepID=A4BJD8_9GAMM Length = 365 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 173/350 (49%), Positives = 219/350 (62%), Gaps = 9/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DC++AA+EMRD P LR P+A+GG + R V+ST NY AR +G+ SAMP+ Sbjct: 3 RKIIHIDCDCYYAALEMRDFPELRGRPVAVGG-QGPRSVLSTCNYEARHYGLHSAMPSRR 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL LCP L + P RFD Y+ S IR+IFSRYT RIEPLSLDEA+LDVTDS GSA++ Sbjct: 62 ALSLCPGLIIQPHRFDVYRAVSEQIRQIFSRYTDRIEPLSLDEAFLDVTDSTWFGGSASM 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A+ IRQ I E +T SAG+AP KFLAK+AS+ KPNG + I+P V FL +LPL KI Sbjct: 122 LAEHIRQEIVQETGITVSAGIAPNKFLAKVASEWRKPNGLYSISPEAVDEFLSSLPLKKI 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG + KL GL TCGDV + L L + FGK G L++R++GID R V RK Sbjct: 182 NGVGSKFSQKLAEHGLHTCGDVLRWSLPRLTQYFGKSGLWLYQRARGIDHRPVGVRSDRK 241 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ VE T D+ S C + L L RRLA P L I VK++F+DF TT E Sbjct: 242 SLSVEHTFDTDLAGESACLTQLTPLLDTLNRRLAAKDP-LPIKGVFVKVRFNDFSTTTME 300 Query: 302 HVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P R + L+ A + + RGVRL+GL V + Q + QL L Sbjct: 301 RGLPCLRASYEQLLKAACQ-----KSHRGVRLLGLGVRFEEKQSKDQLEL 345 >UniRef50_A3NBC4 DNA polymerase IV n=15 Tax=pseudomallei group RepID=A3NBC4_BURP6 Length = 403 Score = 303 bits (775), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 166/350 (47%), Positives = 229/350 (65%), Gaps = 2/350 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH D DCF+A+VEMRD+P+LR P+A+GG ++RGVI+T NY AR++GV SAM + + Sbjct: 19 RKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYDARRYGVHSAMSSAL 78 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++ CP L +LP D Y+ AS I I+ YT +EPLSLDEAYLDV+ + C GS TL Sbjct: 79 AMRKCPDLLILPPAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCQGSGTL 138 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR+ + + + +T SAGVAP KF+AKIASD NKP+G FV+ P EV AF+ LP+ K+ Sbjct: 139 IAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHEVDAFVAALPVRKL 198 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+AA+L+ +G+RTC ++ L L + FG FGR L E ++GIDER V +++ RK Sbjct: 199 HGVGKVTAARLDKLGIRTCAQLRDWSLFDLHRTFGAFGRRLHELARGIDERPVRADQARK 258 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV VE T +D+ C A I RL L+ R+ + I + VK++F DFQ+TT E Sbjct: 259 SVSVETTYVQDLAALDACAAEIRRLTGLLDARIERAGAARSIRKLYVKIRFADFQRTTVE 318 Query: 302 HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 V + +A K RR + VRL+G+ V + + ER + L Sbjct: 319 CVADATDAETAVALLAKGLARRR--QAVRLLGVGVRIDEDTAERHGQIAL 366 >UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidetes RepID=C6VYA9_DYAFD Length = 372 Score = 283 bits (724), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 158/341 (46%), Positives = 214/341 (62%), Gaps = 7/341 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A+VE RD P R P+A+GGS RGV++TA+Y ARKFGVRSAMP+ Sbjct: 10 IRKIIHIDMDAFYASVEQRDFPEYRGKPLAVGGSPTGRGVVATASYEARKFGVRSAMPSR 69 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A++LCP + + RF+ YK S IREIFSRYT IEPLSLDEAYLDVT+ GSA Sbjct: 70 QAIQLCPQIIFVHPRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYLDVTEDKMGIGSAM 129 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++I+Q I EL LTASAGV+ KF+AKIASD++KPNG I P+++ F+ LP+ K Sbjct: 130 EIAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIGPSKIERFMDQLPVEK 189 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKV+A K++ M L T D++K L+ FGK G + +GID+R+V + R Sbjct: 190 FHGVGKVTADKMKGMQLFTGSDLKKLTEEELVNHFGKTGHFYYRIVRGIDDREVQTHRET 249 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT 299 KS+G E T D+ E ++R+ + RL K L R +K+KF DF Q T Sbjct: 250 KSLGAEDTFTYDLTTPDEMNKELDRIGVTVANRLETKK---LKGRTVTLKVKFSDFTQIT 306 Query: 300 QEHVWPR-LNKADLIATARKTWDERRG--GRGVRLVGLHVT 337 + H + + D I K E+ G+ VRL+G+ ++ Sbjct: 307 RNHSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRLLGISLS 347 >UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damage-inducible protein P n=12 Tax=Acinetobacter RepID=B0VP90_ACIBS Length = 363 Score = 283 bits (724), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 152/320 (47%), Positives = 211/320 (65%), Gaps = 16/320 (5%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIH+DMD F+A+VE+R+ P LR +P+ I S R VI+ A+YPAR+FG+RSAM Sbjct: 1 MRKIIHIDMDAFYASVELRERPDLRHLPVVIS-SHHPRAVIAAASYPAREFGLRSAMSMS 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCP + ++ F+ Y+ S I IF +YT+ IEPLSLDEAYLDVT+++ SAT Sbjct: 60 QARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIASAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A IR+ IF + LTASAGVAP KFLAK+ASD NKPNG FVI P++V +F+Q LPL K Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQDLPLKK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KL+ + L T GD+QK + +L+ FGK+G+ L+ +QGID R V +ER R Sbjct: 180 IPGVGKVTQEKLQQLELHTLGDLQKIEEAVLVHHFGKYGQQLYLYAQGIDNRPVQAERAR 239 Query: 241 KSVGVERTMAEDIHHWSECEA----IIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDF 295 + + E T D ++C++ + E+++ LE++ L AR +KLK +F Sbjct: 240 QQISKETTFDSDF-TLAQCQSYWHGLAEKVWQSLEKK-------QLNARGVNIKLKLKNF 291 Query: 296 Q--QTTQEHVWPRLNKADLI 313 Q Q ++ P ++ DLI Sbjct: 292 QTLQHSKSFKNPIHSQQDLI 311 >UniRef50_A6DIV6 DNA polymerase IV n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIV6_9BACT Length = 354 Score = 266 bits (680), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 142/304 (46%), Positives = 192/304 (63%), Gaps = 5/304 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMDCFFAAVE+RD P L+ +A+GG+ +RRGVI+ ANY AR FGV SA+ T + Sbjct: 6 RKIIHVDMDCFFAAVEVRDQPELKGKAVAVGGAAKRRGVIAAANYEARNFGVHSALSTAI 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP L ++ YKE S + +IF +YT +E +SLDEA+LDV++ HGS TL Sbjct: 66 ALRRCPELIIVRPNMSKYKEVSTEVFKIFRKYTHLVEAISLDEAFLDVSECPLHHGSGTL 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I++ I+ + L ASAG+AP K+LAKIASD KP+G + I P + F+Q LP+ KI Sbjct: 126 IAEAIKKDIYAKTGLRASAGIAPNKYLAKIASDWMKPDGIYTIPPENIEKFVQQLPVKKI 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 GVGK + +L GL TC D+QK + L K G L E ++GID R+V + R R Sbjct: 186 WGVGKETLRELRKFGLETCADLQKISVKNLAKLIGTNRAEELLELAKGIDNREVKANRER 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKV---KPDLLIARQGVKLKFDDFQQ 297 KS ERT D+ H EC ++ ++ E +++L KP I +K+KF DF Sbjct: 246 KSYTRERTFDSDLSH-GECSDALKVIFDECKKKLKAYLEEKPQYKIKTSVLKVKFADFTS 304 Query: 298 TTQE 301 TT E Sbjct: 305 TTVE 308 >UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WH69_9SYNE Length = 371 Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 148/358 (41%), Positives = 209/358 (58%), Gaps = 13/358 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A++E RDNP LR P+A+GG +RG + A+Y ARK+G+ SAMP+ Sbjct: 20 VRKIIHIDMDAFYASIEQRDNPELRGKPVAVGGLPSQRGAVCAASYEARKYGIHSAMPSR 79 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A+ C HL + RF+ Y+ S IR IF YT +EPLSLDEAYLDV+ GSA Sbjct: 80 SAITRCQHLIFVKPRFEHYRAVSAEIRAIFFDYTELVEPLSLDEAYLDVSVDKQGIGSAV 139 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++IR I +LQLTASAGV+ KFLAKIASD+NKP+G I+P E F++ L + Sbjct: 140 AIAKQIRDRIRTDLQLTASAGVSINKFLAKIASDLNKPDGLSFISPEEAKTFIEQLRIED 199 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A K++++G+ T D++ L + FGK G + ++ D R VN R+R Sbjct: 200 FYGVGPATATKMKSLGIHTGADLKTWTQAELTQTFGKVGSYYYRVARAEDNRPVNPNRIR 259 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQG----VKLKFDDFQ 296 KS+G ER+ D+ + E + + E+ +RL K K RQG +K+K+D++ Sbjct: 260 KSIGAERSFFRDLSQIEDMETALANIATEVSQRLQKNK------RQGHTLTLKIKYDNYD 313 Query: 297 QTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVT-LLDPQMERQLVLGL 351 T+ P K L R R VRL+G+ V+ L+ PQ QL L + Sbjct: 314 TITRSRTLETPIEEKQILQIATRLLSLHVERDRPVRLLGITVSNLIAPQPYHQLTLNI 371 >UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria RepID=B9JZV6_AGRVS Length = 385 Score = 263 bits (673), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 143/300 (47%), Positives = 189/300 (63%), Gaps = 3/300 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD F+A+VE RD P L P+A+GGS R GV++ A+Y AR FGV SAMP+ Sbjct: 32 VRKIIHVDMDAFYASVEQRDKPELLGKPVAVGGSAAR-GVVAAASYEARAFGVHSAMPSV 90 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L +P RFD Y++ S+ IREIF+ YT IEPLSLDEAYLDVT+++ AT Sbjct: 91 TAKRKCPDLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIAT 150 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR I L ASAG++ KFLAK+ASD+NKPNGQ VITP P F++ LP+ + Sbjct: 151 EIALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVKR 210 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A +++ G+ T D++ L L FGK G + ++GIDER V ++R+R Sbjct: 211 FHGVGPATAERMQRHGIETGLDLKSKSLQFLQTHFGKSGSYFYGIARGIDERQVRADRIR 270 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T EDI A + L ++ R D+ VK+K+ DF Q T+ Sbjct: 271 KSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCE--SHDIKGKTITVKIKYSDFSQATR 328 >UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms RepID=A4CII2_9FLAO Length = 366 Score = 263 bits (672), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 150/348 (43%), Positives = 213/348 (61%), Gaps = 7/348 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD FFA+VE RD P LR PIA+GG +RGV++ A+Y AR FGVRSAM Sbjct: 7 LRKIIHIDMDAFFASVEQRDQPELRGRPIAVGGG-AKRGVVAAASYEARTFGVRSAMSGV 65 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L + RFD Y+E S IR IF YT +EPLSLDEAYLDVT + SAT Sbjct: 66 QARRLCPELVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYLDVTANRKGMPSAT 125 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIA+EIR+ I E LTASAG++ KF+AK+ASD NKPNGQ + P +V FL++L + K Sbjct: 126 LIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPEDVQEFLESLEIRK 185 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKV+A K+ A+G+ T D+++ L FGK G + +G+ + V R+ Sbjct: 186 FHGVGKVTAEKMNALGIFTGADLRRQSEHFLTGHFGKSGHHYYRVVRGVHDSPVQPSRVP 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRL-AKVKPDLLIARQGVKLKFDDFQ-QT 298 KS+G ERT +E++ + ++ EL RRL + + I +K+++ DF QT Sbjct: 246 KSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTIT---LKIRYSDFSLQT 302 Query: 299 TQEHVWPRLNKAD-LIATARKTWDERRGGRGVRLVGLHVTLLDPQMER 345 + ++ + ++A AR ++ VRL+G+ ++ LD + E+ Sbjct: 303 RSRTLAEYIDSPERILAAARDLLYQQPLENSVRLLGISLSNLDTEKEK 350 >UniRef50_UPI0000397F7C COG0389: Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI0000397F7C Length = 278 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/274 (51%), Positives = 177/274 (64%), Gaps = 4/274 (1%) Query: 79 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTA 138 YK S I +IF RYT +E LSLDEAYLDVTD C GSAT IAQEIR I+NEL LTA Sbjct: 4 YKAVSEQIHQIFRRYTDIVELLSLDEAYLDVTDCRQCSGSATWIAQEIRDAIWNELHLTA 63 Query: 139 SAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLR 198 SAG+AP+KFLAKIASD NKPNGQFVI+P + AF+ LPL KIP VGKV+ KL +GL Sbjct: 64 SAGIAPLKFLAKIASDQNKPNGQFVISPENMTAFIYDLPLKKIPRVGKVTNEKLAQLGLH 123 Query: 199 TCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSE 258 TCGD+Q D + K FGKFG+ LWE S ID R + + R RKS+ VE T+ DI H +E Sbjct: 124 TCGDIQHSDKAFIYKTFGKFGQRLWEFSHAIDNRKIEANRPRKSLAVENTLPTDIWHLAE 183 Query: 259 CEAIIERLYPELERRLAKVKPDLLI---ARQGVKLKFDDFQQTTQEHVWPRLNKADLIAT 315 E I++ L+ +L RL + + + + +KLKF DF QTT E L++ I Sbjct: 184 AEQIVDELFKKLVFRLQRNWGERSLQEFKKLAIKLKFGDFTQTTLERTTDGLSRERFIEL 243 Query: 316 ARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 ++ W +R R VRL+GL V ++++QL L Sbjct: 244 LQQVW-QRTNRRSVRLIGLSVHYPTEKVKKQLNL 276 >UniRef50_C8Q3E7 Damage inducible protein P (DNA polymerase IV) (Fragment) n=4 Tax=Enterobacteriaceae RepID=C8Q3E7_9ENTR Length = 167 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 125/167 (74%), Positives = 142/167 (85%) Query: 185 GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVG 244 GKVSA KLE MGL TCGDVQ+ DL LLKRFGKFGR+LWERS G+DER V ER RKS+G Sbjct: 1 GKVSAKKLEEMGLLTCGDVQQTDLARLLKRFGKFGRVLWERSHGVDERGVVVERERKSLG 60 Query: 245 VERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW 304 VERT+ EDIH W +C II+ LY ELERRL +++PD LIARQGVKLKF+DFQ TTQEH+W Sbjct: 61 VERTLMEDIHSWEQCLEIIDYLYEELERRLTRIRPDKLIARQGVKLKFNDFQLTTQEHIW 120 Query: 305 PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P LNK D+IA ARKTWDERR GRGVRLVGLHVTL++PQ+ERQL+LGL Sbjct: 121 PVLNKEDMIAVARKTWDERRAGRGVRLVGLHVTLVNPQLERQLLLGL 167 >UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_HALHL Length = 356 Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 150/349 (42%), Positives = 208/349 (59%), Gaps = 7/349 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE RD+P+LR P+ +GGS E RGV++ A+Y AR FG+RSA P Sbjct: 4 RKIIHIDMDAFYASVEQRDDPSLRGQPVVVGGSPEGRGVVAAASYEARAFGIRSAQPAAW 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + CP L RFD Y+ S I IF+ + + IEPLSLDEAYLDVT S GSAT Sbjct: 64 ARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRGSATH 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +AQ IR+ I E LTASAGV+ K LAK+ASD KP+G +V+ P + PA++ P+ ++ Sbjct: 124 MAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGPAYVAAQPIRRL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG +AA+LE +G+R GD+ +L L G L + ++GID R V R RK Sbjct: 184 HGVGPATAARLERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRPVRPRRSRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQ 300 S+G ERT +D E I +RL P + + +++ L+AR +KL++ DF+ T+ Sbjct: 244 SIGAERTFGDDTRDLGE---IHQRLAPLITKVATRLEHHELVARTVTLKLRYADFESITR 300 Query: 301 --EHVWPRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQ 346 P AD+ A E G R VRL+G+ ++ L P+ Q Sbjct: 301 RVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQ 349 >UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=DPO4_NEIMF Length = 352 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 129/252 (51%), Positives = 172/252 (68%), Gaps = 1/252 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE+R+ P L+ P+ + R VI A+Y AR+FG+ SAM Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGAR-SVICAASYEARQFGLHSAMSVAT 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP +P FD Y++ S I +F RYT IEPLSLDEAYLDVT + A+ Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYASE 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A+EIR IF E LTASAG+AP KFLAKIASD KPNGQFV+ P +V AFL+TLPL KI Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ K++++G+RT GD+++ + LL FG++G L++ +G DER V +ER R Sbjct: 183 PGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAERERL 242 Query: 242 SVGVERTMAEDI 253 + E T+ ED+ Sbjct: 243 QISTEITLPEDL 254 >UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42_AGRT5 Length = 357 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 147/304 (48%), Positives = 192/304 (63%), Gaps = 11/304 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIHVDMD F+A+VE RDNP LR P+A+G S RGV++ A+Y AR+FGVRSAMP+ Sbjct: 1 MRKIIHVDMDAFYASVEQRDNPELRGRPVAVG-SAAARGVVAAASYEAREFGVRSAMPSV 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L +P RFD YK S IR IF+ YT IEPLSLDEAYLDVT+++ AT Sbjct: 60 TAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I L ASAG++ KFLAK+ASD+NKPNGQ VITP PAF++ L + K Sbjct: 120 EIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLAVKK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A K+ G+ T D++ L L + FGK G + ++GIDER V +R+R Sbjct: 180 FHGVGPATAEKMHRFGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPDRIR 239 Query: 241 KSVGVERTMAEDIHHW----SECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 KSVG E T + DI+ +E + E+++ E + K VK+K+ DF Sbjct: 240 KSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKT------VTVKVKYSDFT 293 Query: 297 QTTQ 300 Q T+ Sbjct: 294 QATR 297 >UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_CLOD6 Length = 365 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 144/349 (41%), Positives = 213/349 (61%), Gaps = 10/349 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A++E RDN L+ P+ +GG+ + RGV++T +Y ARKFG+ SAMP+ + Sbjct: 5 RKIIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMPSAV 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A CP+ + RFD YK S IR+IF RYT +EPLSLDEAYLDVT + S+ Sbjct: 65 AYNRCPYAVFVRPRFDVYKSVSEKIRDIFYRYTDLVEPLSLDEAYLDVTKNKKNIDSSIE 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++I++ IF E+ LT+SAGV+ KFLAKIASD+ KPNG VIT FL LP+ K Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV++ L+ +G++T D++ +L L F K G L++ ++GID+R V R+RK Sbjct: 185 FGVGKVTSNTLKNLGIKTGYDLRCLNLFELENIFKKRGYELYKFARGIDDRPVEPNRVRK 244 Query: 242 SVGVERTMAEDIH-HWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 SVG E T++ ++ E I++ L E+ RL + +K+K++DF + T+ Sbjct: 245 SVGAETTLSHNLDIDEEETRNILDELCEEVCHRLK--NSEKFGKTLTLKIKYEDFTKITR 302 Query: 301 ----EHVWPRLNKADLIATARKTW-DERRGGRGVRLVGLHVTLLDPQME 344 EH N D+ + + G+ +RL+G+ ++ L + E Sbjct: 303 SLSLEHYIDEYN--DIRSGVDNLLRNVEVNGKQIRLLGVTISNLSDKKE 349 >UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacter RepID=Q1QAG3_PSYCK Length = 371 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/305 (46%), Positives = 189/305 (61%), Gaps = 6/305 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A+VE RD P LR P+ +GG RGV++ A+Y RKFGVRSAM Sbjct: 19 LRKIIHIDMDAFYASVEQRDFPELRGKPLVVGGDPNGRGVVAAASYEVRKFGVRSAMSCY 78 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGSA 119 A K CP + +P RFD Y+ S IR I T +EPLSLDEAYLDVT SVH GSA Sbjct: 79 EARKRCPEVIFVPPRFDVYRAVSVEIRRIMHILTPHVEPLSLDEAYLDVTGLSVH-QGSA 137 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 TL+A +R I + L ASAGV+ K LAKIASD+NKPNG VITPA+ AF+ LP+ Sbjct: 138 TLMANWLRAQILGQTGLNASAGVSFNKMLAKIASDINKPNGTAVITPADADAFISALPIE 197 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 + G+GK +A +L AMG+ D+++ +L+ FGK G+ + + G DER V SER Sbjct: 198 RFHGIGKATAKRLHAMGVSNGADLRRTPAAILVNEFGKRGQFYHDIAHGRDERAVKSERT 257 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQT 298 KSVG E T E++ +E + ++Y + +++ LIA +K+K+ DF Q Sbjct: 258 HKSVGSETTFRENLTDDNELKI---QIYEQNADAFSQLHKKQLIAYTITLKVKYSDFTQV 314 Query: 299 TQEHV 303 T+ H Sbjct: 315 TRSHT 319 >UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatella RepID=C8NE97_9LACT Length = 352 Score = 257 bits (656), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 148/355 (41%), Positives = 209/355 (58%), Gaps = 10/355 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKI+HVDMD FFA+VE R++P R P+ +GG RGV+ST +Y AR FGVRSAMPT Sbjct: 1 MRKILHVDMDAFFASVEQREHPEWRGKPVIVGGKPNERGVVSTCSYEARAFGVRSAMPTA 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A+KLCP L PG + YKE S+ +RE+F +T+ IEPLS+DEAYLDVT++ SAT Sbjct: 61 KAMKLCPKAILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYLDVTNNSRGIASAT 120 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A I++ ++ + LT S GV+ KFLAK+AS KP+G VITP F++T+P+ Sbjct: 121 LVAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKPSGITVITPENAQEFIRTIPIGD 180 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKVSA KL G+ T D+ L RFG G L+ + +GI + R R Sbjct: 181 FYGVGKVSAEKLRRAGIETGEDLLHLSKAELESRFGNLGPRLYAQVRGISNDQLTLYRER 240 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ-QTT 299 KS+G ERT+ +D +E+ E+ L K +A + + LK D TT Sbjct: 241 KSMGSERTLIKDTTDHGILSEYLEKFSLEIASMLQKRA----LASRTISLKLRDSNFNTT 296 Query: 300 QEHVWPR--LNKA-DLIATARKTWDERRGGRGVRLVGLHVTLLDP--QMERQLVL 349 + V R NK +++ A + ++E + +RL+GL V+ L+ ++ +QL L Sbjct: 297 SKSVTLRDYFNKKEEILQLALQLFEEMMDEKPIRLIGLSVSHLEKTDKIYKQLKL 351 >UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=C1F962_ACIC5 Length = 374 Score = 254 bits (648), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 145/302 (48%), Positives = 186/302 (61%), Gaps = 10/302 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKI+HVDMD F+A+VE RD P LR P+ + R RR V+ A+Y AR+FGVRSAMP Sbjct: 14 RKIVHVDMDAFYASVEQRDAPELRGKPVVVAW-RGRRSVVCAASYEARQFGVRSAMPAVT 72 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP +P F YK S +REIF R+T IEPLSLDEAYLDVT + +AT Sbjct: 73 AERLCPQAIFVPPDFTRYKAVSRAVREIFERHTDLIEPLSLDEAYLDVTHNKTGLPTATK 132 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A IR+ I EL LTASAGVAP KFLAKIASD KP+G FVI P ++ FL L + +I Sbjct: 133 VAITIRRQIREELSLTASAGVAPNKFLAKIASDWRKPDGLFVIQPQDLATFLPPLAVGRI 192 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ +L +G+RT GD+Q DL L FG++G L+ ++G+D V R K Sbjct: 193 PGVGKVTEERLARLGIRTAGDLQHYDLATLESNFGRYGLRLYHLARGVDHSPVTPNRPTK 252 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPEL---ERRLAKVKPDLLIARQGVKLKFDDFQQT 298 SV E T DI S E +I RL ++ RR A++ +++ KLK DF Sbjct: 253 SVSAEDTFEADI-PLSATEPVIRRLSEKVWNASRREARIARTVVL-----KLKTGDFHIH 306 Query: 299 TQ 300 T+ Sbjct: 307 TR 308 >UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica RepID=DPO4_RHOBA Length = 396 Score = 253 bits (646), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 129/264 (48%), Positives = 173/264 (65%), Gaps = 3/264 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+A+VE RD P LR P+ +GGS E RGV++ A+Y AR++G+ SAMP A+ Sbjct: 2 ILHVDMDAFYASVEQRDRPELRGRPVVVGGS-EGRGVVTAASYEAREYGIHSAMPGSRAI 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCPH + GR D Y +REIF R+T ++PLSLDEA+LDV+ ++ HGS I Sbjct: 61 KLCPHADFVRGRLDHYASVGRAVREIFHRFTPVVQPLSLDEAFLDVSGTIRLHGSPREIG 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE-VPAFLQTLPLAKIP 182 IR+TI EL L AS G+AP+KF+AKIASD+ KPNG FV PA+ V FL LP++++ Sbjct: 121 INIRETIRRELDLPASVGIAPLKFVAKIASDIGKPNG-FVEVPADGVREFLDPLPVSRLW 179 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVGKV KL+ +G RT D++ DL L + G++G LW + GID R V + L K Sbjct: 180 GVGKVGQTKLQRLGYRTIADLRVKDLDALKSQLGRWGEHLWNLANGIDRRQVVVDHLAKG 239 Query: 243 VGVERTMAEDIHHWSECEAIIERL 266 +G ERT AED+ A++ L Sbjct: 240 IGHERTFAEDLSDIESLNAVVSYL 263 >UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae RepID=DPO4_STAHJ Length = 358 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 138/298 (46%), Positives = 185/298 (62%), Gaps = 4/298 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+IIH+DMD FFA VEMRDNP L+ P+ +GG RGV+STA+Y ARK+GV SAMP Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPTLKGKPVIVGGKASTRGVVSTASYEARKYGVHSAMPMSQ 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP+ + RFDAY+EAS I IF YT +EP+SLDEAYLD+T V SA+ Sbjct: 64 AHKLCPNGYYVRARFDAYREASAVIMSIFKSYTDIVEPMSLDEAYLDITHLVRPDLSASK 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA IR+ IF + LT+SAGV+ KFLAK+AS MNKPNG VI V L L + Sbjct: 124 IATFIRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPNGMKVIDYNNVNDILMNLDIGDF 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGK S + + T D+ L++ FGK GR L+ +++GID +V + R+RK Sbjct: 184 PGVGKASKKVMHNHDIYTGKDLYDKTEFELIRWFGKRGRGLYLKARGIDHSEVKATRVRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 SVG ERT + D++ + E I+++++ EL + A+ L + V +K +Q T Sbjct: 244 SVGTERTFSTDVN---DDEEILQKIW-ELSGKTAERLSKLQKSGSTVTVKLKTYQYET 297 >UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_LEPIC Length = 364 Score = 250 bits (638), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 146/355 (41%), Positives = 205/355 (57%), Gaps = 14/355 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD F+A+VE RD P + P+ +GG R V+S A+Y ARKFGVRSAMP Sbjct: 6 RKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVSAASYEARKFGVRSAMPCSK 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +L P + RF+ YKE S IREIF YT +E LSLDE YLDVT + A Sbjct: 66 AAQLAPQAIFVFPRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYLDVTFNKKNIPFAVT 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR IF +LTASAGV KF++K+AS+ NKPNG V+ P +V +F+ LP++ Sbjct: 126 IAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLPDDVISFIDPLPVSSF 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A K++ +G+ T D++ + L++ FGK G ++ S+G DER V S R RK Sbjct: 186 HGVGKVTARKMKELGIYTGKDLRTKSIDELVQHFGKMGIYYYKISRGEDERMVQSSRERK 245 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T D + + ++ + +ERRL K D +K+KF DF T+ Sbjct: 246 SLGAESTFDRDKLDYDDLLKQLKDVAVVVERRLE--KKDFAGKTLTLKIKFYDFSLKTRS 303 Query: 302 HVW--PRLNKADLIATARKTWDE--------RRGGRGVRLVGLHVTLLDPQMERQ 346 P +L +TA + ++E + + +RL+G ++L P E + Sbjct: 304 KTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIKAIRLLG--ISLSHPNSENE 356 >UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=DPO4_XANOM Length = 359 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 132/253 (52%), Positives = 168/253 (66%), Gaps = 1/253 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKI+HVDMD F+A+VE RD+P LR P+ + R R V+ A+Y AR FG+RSAMP Sbjct: 1 MRKIVHVDMDAFYASVEQRDDPGLRGKPVVVAW-RGARSVVCAASYEARTFGIRSAMPAV 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP+ +P F YK S +REIF R+T +EPLSLDEAYLDVT + AT Sbjct: 60 RAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQAKTGMQLAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IAQ IR I E +LTASAG+AP KFLAKIASD KP+GQFVI P+ + AFL L + + Sbjct: 120 EIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRIDAFLLPLKVNR 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV KL A+G+ T D++ L L FG FG+ L+ R++GIDER V ++ Sbjct: 180 IPGVGKVMDGKLAALGIVTVADLRLRPLEELQAHFGSFGQSLYRRARGIDERPVEPDQDV 239 Query: 241 KSVGVERTMAEDI 253 +SV E T +ED+ Sbjct: 240 QSVSSEDTFSEDL 252 >UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3M4_EXISA Length = 363 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 154/354 (43%), Positives = 203/354 (57%), Gaps = 9/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIHVDMD F+A+VE RD P LR P+ +GG RGV++T +Y ARK+GV SAM + Sbjct: 3 RLIIHVDMDAFYASVEQRDRPNLRGKPVIVGGPPHSRGVVATCSYEARKYGVHSAMSSRR 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCPH T + RF AY++ S + EIF T +EPLSLDEAYLDVT++ S Sbjct: 63 AFALCPHATFVKPRFQAYRQVSAQVMEIFKSVTPLVEPLSLDEAYLDVTENSLLSTSGPF 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I I LTASAGVAP KF+AKIAS KPNG V+ EV FL L + + Sbjct: 123 IARYILGEIKRRTGLTASAGVAPSKFVAKIASGFEKPNGLTVVPLDEVATFLAPLSIEAM 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVGKV+A L G T GD+Q+ L FG G+ L+E + G D R V + R R Sbjct: 183 HGVGKVTAQTLYKSGYHTIGDLQQTRPEQLKGIFGHDRGQQLYELAHGRDTRPVVAMRER 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKV-KPDLLIARQGVKLKFDDFQQTT 299 KS+G E T A DI + E + ER+ PE+E L ++ + DL +K+K +FQ + Sbjct: 243 KSIGSETTFAFDI---DDPEEVFERVIPEMEDVLRQLDRRDLSCQTVTIKIKTSEFQARS 299 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVL 349 + P + ++ AR+ +DE VRL+GL V+ L P+ E RQL Sbjct: 300 HQIKLNHPTHDHDEIRRLARRLFDEMNVTEPVRLIGLTVSDLIPRTESTRQLTF 353 >UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibrio RepID=B8DIF6_DESVM Length = 481 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 148/357 (41%), Positives = 206/357 (57%), Gaps = 13/357 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FFA+VE D+P+LR P+A+GGS RGV+S A+Y AR+FGVRSA+P Sbjct: 4 RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGSH--RGVVSAASYEARRFGVRSALPMST 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCPHL ++PGR Y E S+ I + ++ +EP S+DEAYLD T G Sbjct: 62 ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121 Query: 122 IAQEIRQTIFNELQ-LTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 + ++ + + LT S G APVKFLAKIASD+NKPNG F++ P +V FL+TLP+ + Sbjct: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGK S LE +G+R GDV + +RFGK G L ER+ G+D R+V Sbjct: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241 Query: 241 KSVGVERTMAEDIHHWSECEAIIER-LYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQT 298 KS E T +ED + A++ R L + ER A ++ L R +K+K+ DF+ Sbjct: 242 KSESAENTFSED----TADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSI 297 Query: 299 TQEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVLGL 351 ++ H P + + A + D VRL+G+ V+ P RQL L L Sbjct: 298 SRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPAHHGPRQLTLPL 354 >UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX85_SYNWW Length = 393 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 135/344 (39%), Positives = 198/344 (57%), Gaps = 6/344 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 + I+H D+D FFA+VE DNP+LR P+ +GGS RGV+ST +Y ARKFG+RSAMP Sbjct: 4 LTNILHCDLDAFFASVEQLDNPSLRGKPVVVGGSMHSRGVVSTCSYEARKFGIRSAMPIA 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP LP Y E S + I SRY+ E +S+DEA+LD++ +GS Sbjct: 64 QAYRLCPQAVFLPVNMPRYLEISKQVFSILSRYSPIKEIISIDEAFLDISGCSSLYGSPE 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 I I + +++EL LT S G++ KFLAK+ASDM+KPNG +IT +E L+ LP+++ Sbjct: 124 KIGCLINEQVYSELGLTISVGISYNKFLAKLASDMDKPNGLRIITESEALELLRPLPVSR 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 I G+G+ + L+ +G++T GD+Q L + G GR+ WE + GID R V E R Sbjct: 184 IWGIGQKTEQSLDKLGIKTIGDIQDSPPEWLEDKIGSAGRLFWELAHGIDRRAVEPEHER 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T EDI+ + E +I + EL R+L + L A +KL++ +F+ T+ Sbjct: 244 KSLGREETFPEDINDTAYLEKLIVQFAAELCRKLRQEA--LFAATITIKLRYSNFKTITR 301 Query: 301 EHVWPRLNKADLIAT---ARKTWDERRGGRGVRLVGLHVTLLDP 341 N +D+I T + + +RL GL + L P Sbjct: 302 SKTINPCN-SDIIVTQIASELLHHSYNNKQPLRLFGLSLGQLSP 344 >UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=Q2S2C0_SALRD Length = 373 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 148/346 (42%), Positives = 204/346 (58%), Gaps = 15/346 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPA-LRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 R+I+HVDMD F+A +E RD P PIA+GG R GV+ TA+Y AR +GV SA P Sbjct: 19 RRIVHVDMDAFYAQIEQRDFPDRYAGKPIAVGGDPPR-GVVQTASYEARPYGVHSAQPAV 77 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L + R D Y+E S IR+I RYT +EPLSLDEAYLDVT+ S T Sbjct: 78 EADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRPSGT 137 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIA+ +R I+ E LTASAGV P KF+AK+ASD++KP+G V+ P E F+ LP+ K Sbjct: 138 LIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQMEFIAQLPIEK 197 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+G V+AAK++ +G++T D+Q+ L+ FGK GR + G D+R V +R R Sbjct: 198 FHGIGPVTAAKMQELGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRPVQPDRDR 257 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQG----VKLKFDDFQ 296 KSVG ERT EDI + E +++RL P ER +++ R+G +KLK D Q Sbjct: 258 KSVGAERTFPEDI---ARAETMLDRLSPIAERVAQRLR---QANRKGRTVTLKLKSHDHQ 311 Query: 297 QTTQEHVWPRLNKAD---LIATARKTWDERRGGRGVRLVGLHVTLL 339 +T++ R +A+ + T R VRL+G+ V+ L Sbjct: 312 VSTRQTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLGISVSSL 357 >UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q2KZS3_BORA1 Length = 360 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/321 (45%), Positives = 196/321 (61%), Gaps = 8/321 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKI+H+DMD F+A+VE RD P LR P+ + + R V+ A+Y AR+FGV SAM Sbjct: 5 IRKIVHIDMDAFYASVEQRDRPELRGQPVVVAWTGAR-SVVCAASYEARRFGVHSAMAVS 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP +P F+ Y+ S +REIFSR+T IEPLSLDEAYLDVT + SAT Sbjct: 64 RAQRLCPDAVYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVTVNKLGLPSAT 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+ IR I E LTASAGVAP KFLAKIASD NKP+G FV+ PA+V FLQ LP+ K Sbjct: 124 AVAEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKPDGLFVLRPAKVLEFLQPLPVRK 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PGVG+V+ A+LE++G+ T GD+ C L FG+ G L E ++G+DER+V ++ Sbjct: 184 VPGVGRVTQARLESLGIHTVGDLATCAPAELEHHFGRHGLRLHELARGLDEREVQPDQPL 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV-KLKFDDFQQTT 299 + V E T D+ EA ++RL R + + + R V KLK D F+ T Sbjct: 244 QQVSAENTFERDLRLADLGEA-LDRLA---ARVWEQARKKGQLGRTAVLKLKTDRFRLLT 299 Query: 300 QEHVW--PRLNKADLIATARK 318 + P + +L A AR+ Sbjct: 300 RSLTLSQPPSSAEELAAIARR 320 >UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychrophila RepID=DPO4_DESPS Length = 376 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 130/301 (43%), Positives = 184/301 (61%), Gaps = 2/301 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIH+DMD FFA++E RD P LR P+ +GG RGV++T Y AR++G+ SAM Sbjct: 3 MRKIIHIDMDAFFASIEQRDRPELRKKPLIVGGLPRGRGVVATCCYEARRYGIHSAMSAN 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCPH + R YKE S I IF YT ++EPLSLDEA+LDVT+ + +GSAT Sbjct: 63 RAYKLCPHAVFVKPRMVLYKEVSLQIMAIFREYTKKVEPLSLDEAFLDVTEYLQINGSAT 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A+EI I L+ASAGV+ KFLAKIASD+ KP G + P E F+ L + K Sbjct: 123 LLAREICALIKLRTDLSASAGVSYNKFLAKIASDLKKPGGISTVPPEEARQFIDRLSIGK 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGK++ +K++++G++T D+++ L+KRFGK G + ++G+DER V + R Sbjct: 183 FYGVGKITKSKMQSLGIQTGKDLRQYSKDFLMKRFGKAGSFFFYNARGLDERPVCPYQNR 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T+ +D + E I+ L L + L L +K+++ DF TT+ Sbjct: 243 KSIGKETTLVQDTNRPEEIRDILINLSSLLGKALE--NNSQLAQTLTLKIRYSDFTTTTR 300 Query: 301 E 301 Sbjct: 301 S 301 >UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomycetales RepID=A6CAV0_9PLAN Length = 388 Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 137/333 (41%), Positives = 198/333 (59%), Gaps = 6/333 (1%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD F+A++E RD+P L+ PI +GG E RGV+S ANYPARKFGV SAMP A +LCP Sbjct: 1 MDAFYASIEERDHPELQGQPIIVGGRAEHRGVVSAANYPARKFGVHSAMPMKTARQLCPQ 60 Query: 69 LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQ 128 P R Y E S +++IF +YT +EPLSLDEA+LDV+ S G+ IA I+Q Sbjct: 61 AHFFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFLDVSGSQLLFGNGREIAASIKQ 120 Query: 129 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVS 188 + + LQL AS GVAP KFLAKIASD +KP+G V+ P ++ FL LP++++ G+GK++ Sbjct: 121 EVRHSLQLIASVGVAPNKFLAKIASDADKPDGLVVVEPDKIQEFLDPLPVSRVWGIGKMA 180 Query: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERT 248 + +G++T V+ + +L + FG+ G LW SQG+DER V ER KS+ E T Sbjct: 181 TQRFNRLGIQTISQVRVLEPKILTELFGEQGLHLWNLSQGLDERAVIPERQAKSISRETT 240 Query: 249 MAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV--WPR 306 + D++ I+ L ++ RRL K K L +K+++DDF T+ P Sbjct: 241 FSSDVNDLEILRIILMDLVEDVSRRLRKNK--LRGKTIQLKIRYDDFSTFTRSITVSQPT 298 Query: 307 LNKADLIATARKTWDERRGGR--GVRLVGLHVT 337 ++ +A D++ R +RL+G+ VT Sbjct: 299 DLTREIEQSALLMLDQKLPERPLSIRLIGVGVT 331 >UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_9GAMM Length = 390 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 138/315 (43%), Positives = 184/315 (58%), Gaps = 3/315 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD FFAAVE RD P LR +P+ +GG RGV++T +Y AR+FG+RSAM Sbjct: 28 IRKIIHVDMDAFFAAVEQRDRPELRGLPVIVGGDPNVRGVVATCSYEARRFGIRSAMSAA 87 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + R DAY+E S + I YT+ +EPLSLDEA+LDVT + A Sbjct: 88 RARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTDGTLAV 147 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EI I E LTASAGV+ K LAK+ASD KP+G FVI P AFL LP+ K Sbjct: 148 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERGLAFLAPLPVGK 207 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG + KL AMG+ T D++ L L+ FGK G ++ ++ IDER V R R Sbjct: 208 LHGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPSRQR 267 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG ERT ++++ S ++ + ++ RL + L +K +F DF T+ Sbjct: 268 KSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLH--LAGHTVHIKARFPDFTTVTR 325 Query: 301 EHVWPR-LNKADLIA 314 + + AD IA Sbjct: 326 AYTATEGIGSADAIA 340 >UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EN92_ACIF5 Length = 378 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 135/303 (44%), Positives = 182/303 (60%), Gaps = 4/303 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD FFAAVE RD+P LR P+ +GG RGV++T +Y AR+FG+ SAM Sbjct: 12 LRKIIHVDMDAFFAAVEQRDHPELRGQPVIVGGDPAGRGVVATCSYEARRFGIHSAMTAA 71 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + R DAY+EAS + I YT +EPLSLDEA+LDVT + A Sbjct: 72 RARSLCPQAVFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFLDVTAATADGVLAV 131 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EIR I E LTASAGV+ K LAK+AS+ KPNG FV+ P AFL LP+ K Sbjct: 132 RIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHGLAFLAPLPVGK 191 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG + KL AMG+ T D++ +L+ +FGK G +E ++GID R V + R R Sbjct: 192 LHGVGPATVKKLSAMGIHTVLDLRNASREVLIAQFGKAGLWFYEVARGIDSRPVQTSRQR 251 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT 299 KSVG ERT +++ + + ++ ++ RL + L R +K +F DF+ T Sbjct: 252 KSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQALG---LAGRTVSIKARFPDFETVT 308 Query: 300 QEH 302 + H Sbjct: 309 RAH 311 >UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS21_DESOH Length = 384 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 139/338 (41%), Positives = 197/338 (58%), Gaps = 5/338 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA+VE D+P R + +G S RGV++ A+Y AR FGV SAMP AL Sbjct: 2 ILHVDMDAFFASVEQLDHPEWRGRAVVVGRS-SGRGVVAAASYEARVFGVHSAMPMSRAL 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP + P R + YKE S + EI + +E +S+DEAYLD++ HG+ I Sbjct: 61 KLCPDAIVAPPRMERYKEVSARVMEILDAVSPLVEQVSIDEAYLDISGCERLHGTPETIG 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + I++ +F+ L +T S GVAP+KFLAKIASDMNKP+G VI P F++TLP+ K+PG Sbjct: 121 KNIKKQVFDTLGITCSVGVAPIKFLAKIASDMNKPDGLMVILPEAADRFIETLPVHKVPG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG V+ +L MG+ T GDV + +L K+ GKFGR L E S+GID+ V KSV Sbjct: 181 VGSVTKKQLALMGIETLGDVVRLPDGVLSKKLGKFGRRLKELSRGIDDSRVVPWHPAKSV 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 E T++ D E + R ++ R L K+ + +K+K+ DF QTT++ Sbjct: 241 SEETTLSRDTAEKQELRHHLLRQAGDVCRHLQKLNARARVVF--IKIKYADFSQTTRQTT 298 Query: 304 W--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL 339 P + + A +++ + VRL+G+ VT L Sbjct: 299 LDAPVQSSDTIYRQASALLEKQTLAQKVRLIGVGVTEL 336 >UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW5_9BACT Length = 387 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 146/343 (42%), Positives = 202/343 (58%), Gaps = 13/343 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD FFAAVE RDNP LR P+A+G R GV+STA+Y ARK+GV SA Sbjct: 19 RKIIHIDMDAFFAAVEQRDNPELRGKPVAVGFDGPR-GVVSTASYEARKYGVHSAQSIAQ 77 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + CP+L ++P R D Y + S+ I +IF YT IEP+S+DEA+LDVT + A Sbjct: 78 AKQRCPNLIIVPCRHDYYAKISHQIHQIFQEYTDLIEPISIDEAFLDVTQNKKGIELAVD 137 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EI+ I LTASAG++ KFLAK+ASD KP+G I P + F+ LP+ Sbjct: 138 IAKEIKTRIKEATGLTASAGISYCKFLAKVASDYRKPDGICTIHPDKAYDFIAQLPIEDF 197 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGK + K+ MG+ D++K L++ FGK G I ++ ++GIDER V + R RK Sbjct: 198 WGVGKKTLQKMHFMGIFNGADLRKVSEEHLVEVFGKAGHIFYDFARGIDERPVITYRERK 257 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT- 299 SVG E+T EDI+ + A+I LY + L ++ R +K+KF DF Q T Sbjct: 258 SVGCEQTFLEDIYLKT---AVIIELYHTVLELLERIAKSGFEGRTLTLKVKFADFTQITR 314 Query: 300 ---QEHVWPRLNKADLIATARKTWDE--RRGGRGVRLVGLHVT 337 QE V + K D++ A++ + +RL+GL V+ Sbjct: 315 SISQEKVLKK--KDDILPLAKRLLKQVDYSSAHPIRLLGLSVS 355 >UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 Length = 353 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 20/348 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 RKIIH+DMD FFAAVE++DNP LR P+ IG + RGV+ST +Y AR FGV SAM Sbjct: 12 RKIIHIDMDAFFAAVEIKDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYEARAFGVHSAMS 71 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 + A + CP + G ++ YK IR IF RYT IEP+S+DEAYLDVT++ S Sbjct: 72 SKEAYERCPQAVFISGNYEKYKAVGLQIRAIFKRYTDLIEPMSIDEAYLDVTENKLGIKS 131 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A IA+ I++ I+ EL LTASAG++ KFLAK+ASD KP+G VI P + FL+ + + Sbjct: 132 AVKIARLIQKDIWQELHLTASAGISYNKFLAKMASDYQKPHGLTVILPEQAEDFLKQMDI 191 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 +K GVGK + +L MG+ T D+ + V L+ RFG+ G L+ +++GI V S R Sbjct: 192 SKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKARGIHNSPVKSNR 251 Query: 239 LRKSVGVERTMA------EDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 +RKS+G E+T EDI E + E++ L ++ K +L K+++ Sbjct: 252 IRKSIGKEKTYGKILRAEEDIK--KELTLLSEKVALNLHQQEKAGKIVIL------KIRY 303 Query: 293 DDFQQTTQ-EHVWPRLNKADLIA-TARKTWDE-RRGGRGVRLVGLHVT 337 +DF T+ + + + A I+ A + ++E RGVRL+G+ +T Sbjct: 304 EDFSTLTKRKSIAQKTQDASQISQIALQLYEELSEKERGVRLLGITMT 351 >UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4_THETN Length = 384 Score = 235 bits (600), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/355 (41%), Positives = 200/355 (56%), Gaps = 22/355 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD FFA++E +DNP R P+ +GG RGV+ST +Y ARK+G+ SAMP M Sbjct: 3 RKIIHVDMDAFFASIEQQDNPEYRGKPVIVGG-LSGRGVVSTCSYEARKYGIHSAMPMYM 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP LP R Y+E S I I T +EP+S+DEAYLDVT H + Sbjct: 62 AKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVT---HVDKNPED 118 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA EI++ + + LT S G++ KFLAK+ASD NKP+G VIT VP L+ LP+ K+ Sbjct: 119 IALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITEDMVPEILKPLPVTKV 178 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G+ SA KL ++G+ T D+ K L++ FGK G ++ R +GIDER V + R K Sbjct: 179 HGIGEKSAEKLRSIGIETVEDLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIK 238 Query: 242 SVGVERTMAED-------IHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 S+G E+T+ +D I H E I+ EL +K L VK+K D Sbjct: 239 SIGKEKTLEKDTKNKELLIQHLKEFSEIVSE---EL------IKERLYCRTVTVKIKTAD 289 Query: 295 FQQTTQEHVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 F T+ + + D+ A+ +E + + VRL+GL V+ L P QL Sbjct: 290 FAVHTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLSPVKYEQL 344 >UniRef50_Q5QZ82 DinP n=2 Tax=Idiomarina RepID=Q5QZ82_IDILO Length = 356 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 153/356 (42%), Positives = 213/356 (59%), Gaps = 12/356 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKI +D+D FFA+ E +P+L+ P A+GG ER V++TANY AR+FGV+SAMP Sbjct: 6 RKIALLDLDAFFASAEELRDPSLKTRPFAVGGGGERG-VVATANYLARQFGVKSAMPGSH 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LT + + Y+E S+ + +I T RIEP S+DE YLD+T GSATL Sbjct: 65 ARRLCPQLTFIRPDGNYYRELSDKVLDILRELTPRIEPASIDEFYLDLTHLEGFKGSATL 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +R+ I L +T SAG++ K +AKIAS+ KP+GQFV+ PAEV ++ L L +I Sbjct: 125 AMDFVREQI-KTLGITGSAGISNQKMVAKIASEERKPDGQFVVRPAEVMDYIAALNLKQI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PGVG S L GL T D+Q +L L G K G +L+ER G D R+V +ER+R Sbjct: 184 PGVGPKSQQVLTNYGLTTGKDIQNIELQQLQAILGDKAGYVLFERCHGRDRREVVTERIR 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIE-RLYPELERRLA----KVKPDLLIARQGVKLKFDDF 295 KSVGVE+T+A D+ S +A ++ L P+L +R+ + +P I Q +KLKF DF Sbjct: 244 KSVGVEQTLATDMRLESTAQAYVQDNLLPKLRQRMKITHWREQP---IRSQTLKLKFSDF 300 Query: 296 QQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 QTT ++ + + W +R G+GVRL+G+ TL DP + QL L L Sbjct: 301 TQTTVSRSAQFISPSLFYQLLDEAW-QRGKGKGVRLLGISATLPDPNEQLQLELEL 355 >UniRef50_C5RD20 DNA-directed DNA polymerase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RD20_WEIPA Length = 372 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 209/362 (57%), Gaps = 19/362 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 RKI+H+DMD F+A +EMRDNP + IP+ + + RGV++TANY AR GV SAM Sbjct: 16 RKILHIDMDAFYAQIEMRDNPEYKSIPLILANDPRKTGGRGVVATANYLARNLGVHSAMS 75 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 ALKL P + F Y+ S + +IF RYT+++EP++ DEAYLDVT+++ + Sbjct: 76 AAEALKLAPQAVFVTPNFSKYRGVSQQLHQIFKRYTNKVEPVAFDEAYLDVTENIPNINN 135 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A E++Q I+ EL+LT+S G++ KFLAK+AS+ NKP+G +I P ++ +FL TLP+ Sbjct: 136 AIQLAHELQQIIYEELELTSSVGISFNKFLAKLASEHNKPSGLTIINPEDIRSFLDTLPI 195 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 ++ GVG +A K+ ++G+R D+ L FGK G I +ER +G+D+R V +R Sbjct: 196 NEMRGVGAKTAEKMISLGIRNGKDLYDTPQNKLADEFGKSGYIFYERIRGVDDRPVVWQR 255 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR---QGVKLKFDDF 295 RKS+ ERT +AI++ EL+ AK+ L+ ++ + + LK D Sbjct: 256 ERKSMSKERTYGP---FLDTEQAIMD----ELKDLAAKLTASLIKSQLHGKTLVLKIRDN 308 Query: 296 QQTTQEHVWPRL----NKADLIATARKTWDERRGG--RGVRLVGLHVTLLDPQMERQLVL 349 + T H RL N D I A + + GG +RL+GL +T L +VL Sbjct: 309 EFQTATHRATRLDFFPNDEDEIYHAAQDILDELGGYHHAIRLLGLTMTNLAALSFENVVL 368 Query: 350 GL 351 L Sbjct: 369 PL 370 >UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C6BW91_DESAD Length = 389 Score = 233 bits (594), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 142/349 (40%), Positives = 199/349 (57%), Gaps = 8/349 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFA+VE DNP LR P+ +G ER V+S A+Y ARKFGVRSAMP AL Sbjct: 5 IMHIDMDAFFASVEQLDNPELRGKPVGVGSMHER-SVLSAASYEARKFGVRSAMPVRQAL 63 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP L ++ G YKE S + S Y+ +E S+DEAY+D+T + G+ IA Sbjct: 64 KLCPQLQVVSGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYIDITGTEKLFGTPLQIA 123 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + I+ I LTAS G+APVKFLAKIASD+NKP+G +IT +V FL+TLP+ KIPG Sbjct: 124 RSIKADIRKATGLTASVGIAPVKFLAKIASDLNKPDGISIITAEQVQDFLKTLPVEKIPG 183 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VGK + +L + G+ D+++ +RFG+ G +L+E+ GID V KS Sbjct: 184 VGKKALPRLRSYGITYAADLRRYPPEFWKERFGERGLVLYEKGAGIDPTPVTEGGAMKSS 243 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQEH 302 E T ED+ S+ + L + ER A ++ + R +K+KF DF+Q T+ Sbjct: 244 SAENTFGEDV---SDIHTLKTLLLKQSERIAADIRKHGVKGRTVTLKVKFPDFRQITRSR 300 Query: 303 VW-PRLNKADLI-ATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 R + A I TA D +RL+G+ ++ + + RQL L Sbjct: 301 TLDSRTSHAGTIYKTACSLLDAELPIGPIRLIGVGISNFE-ERNRQLSL 348 >UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_CARHZ Length = 391 Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/251 (49%), Positives = 160/251 (63%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIHVDMD FFAAVE RDNP L+ P+ +GG RGV++ A+Y ARKFGVRSAM Sbjct: 4 RVIIHVDMDAFFAAVEQRDNPELKGKPVIVGGVPGERGVVAAASYEARKFGVRSAMSLWE 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH +PG Y+E S I IF YT +EP+SLDEAYLDVT S G Sbjct: 64 AARLCPHGIFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSLDEAYLDVTGSQKLFGPGAE 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I ++I++ IF E +LTAS GVAP KFLAK+AS++NKP+G + V FL LP+ + Sbjct: 124 IGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVREDNVLDFLAPLPVEML 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG+ +L MG++T D + L K+FG G+ L+ S+GID R+V ER+ K Sbjct: 184 WGVGEKMKERLNDMGIKTVQDFWELPEFFLRKKFGVLGQNLYYLSRGIDFREVIPERVPK 243 Query: 242 SVGVERTMAED 252 S+G E T+ +D Sbjct: 244 SLGKEITLQKD 254 >UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteria RepID=Q1IRF1_ACIBL Length = 425 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/352 (38%), Positives = 197/352 (55%), Gaps = 14/352 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I HVDMD FF +VE +P+L+ + +GG R+ RGV+S A+Y ARKFGV SAMP Sbjct: 16 RVIFHVDMDAFFVSVEELFDPSLKGKAVVVGGHRDERGVVSAASYAARKFGVHSAMPLRT 75 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP + G + Y+E S E+ +++ ++E S+DEAYLD+T + HG Sbjct: 76 AAKLCPDAIFVNGHPERYREYSGKAFEVLKKFSPKVEMASIDEAYLDMTGTERLHGPPLK 135 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A + Q + +E +L S G+ + +AK+ SD KPNG I P + +FL L + KI Sbjct: 136 AAHALHQFMKSETKLNCSIGIGTSRLIAKVCSDQAKPNGVLYIVPGQEASFLAPLSVRKI 195 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGID-----ERDVNS 236 PGVGKV KL +G++ GD+ K D L +RFG++G L +S+G+D +RDV Sbjct: 196 PGVGKVFEQKLNEIGIKKVGDLAKLDDAFLRERFGEWGLALAGKSRGLDAGGYFDRDVAV 255 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDF 295 + KS+ E T D + EA+I RL + RR V+ L AR +KL++ DF Sbjct: 256 DEGPKSISHEHTFNTDTRDQEKLEAMIARLSEMVCRR---VREHELHARTVQIKLRYSDF 312 Query: 296 QQTTQEHVWPRLNKADLIA--TARKTW-DERRGGRGVRLVGLHVTLLD--PQ 342 T+ H + + D + TAR + D + GR +RL+G+HV D PQ Sbjct: 313 TTITRAHSLEQPTQLDTVVAETARTLFRDNWQRGRTIRLIGVHVAGFDDVPQ 364 >UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTM8_9FIRM Length = 381 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/345 (41%), Positives = 196/345 (56%), Gaps = 20/345 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAI-------GGSRERRGVISTANYPARKFGVR 54 RKI+HVDMD F+A VE RDNPA+ PI I GG RG++ST NY AR++G+ Sbjct: 25 RKILHVDMDAFYANVEARDNPAIAYKPIVIAKHPKLTGG----RGIVSTCNYKAREYGIH 80 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 SAM A K CPH + G + Y+E S IR IF++YT IEP+SLDEAYLDVT + Sbjct: 81 SAMTAAEAFKRCPHAVFIAGDWSHYQEVSQQIRTIFAQYTDLIEPMSLDEAYLDVTHNKL 140 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 SAT +AQ I+ I EL LT S GV+ KFLAKIASD KP G V+TP + FL Sbjct: 141 GIQSATHLAQRIQAQIKAELNLTCSIGVSYNKFLAKIASDYRKPFGITVVTPDQALEFLD 200 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP+ K GVG+ S G+ T D++ +L L++ FGK G+ L+ + +G+ + V Sbjct: 201 DLPIDKFYGVGRQSVPYFHQRGIMTGADLRAIELEDLIEHFGKMGKSLYYKVRGVHDAPV 260 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK--F 292 R RKS+G E T I +E E +++ L +L +R+ ++ Q V LK + Sbjct: 261 QPHRERKSIGKETTF---IQFLAEEEGVLDAL-TQLTKRVVEILKAKNFHAQTVTLKIRY 316 Query: 293 DDFQQTT-QEHVWPRLNKADLIATARKTWDERRG--GRGVRLVGL 334 DDF+ T Q + ++I+ A + E G + VRL+G+ Sbjct: 317 DDFETLTRQLSLGSPSQDVEVISQAVQELWELHGHLHKSVRLLGV 361 >UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=DPO4_EXIS2 Length = 360 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 139/352 (39%), Positives = 196/352 (55%), Gaps = 8/352 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD F+A+VE RD P L+ +P+ +GG RGV++T +Y ARK+G+ SAMP+ Sbjct: 4 RKIIHVDMDAFYASVEQRDRPHLKGVPVIVGGPPHARGVVATCSYEARKYGIHSAMPSRR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + RF+ Y+ S I E+F T +EPLSLDEAYLDVT++ SAT Sbjct: 64 AFQLCPRAVFVRPRFEVYRAVSAQIMELFLEVTPLVEPLSLDEAYLDVTENNLQMTSATH 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I I LTASAGV+ K +AKIAS KPNG V+ P V FL L + + Sbjct: 124 IAQYILAEIKRRTGLTASAGVSNSKLVAKIASGHQKPNGLTVLPPDAVLPFLSGLKIGDL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVGKV+ L+ G T D+Q+ + L G+ G L+ + G DER V R R Sbjct: 184 HGVGKVTEQTLQKHGFNTVADIQQSPIAELRGLLGRDRGTELYTMAHGEDERMVRPHRER 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT 299 KS+G E T ED + + I E L E + + L+ R +K K +DFQ + Sbjct: 244 KSIGSESTFEEDT---EDIDTIFETLKREALSVVKTLNQKELVCRTVTIKWKTEDFQSRS 300 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD-PQMERQLV 348 + + + ++ L+ K ++E +RL+G+ V+ L+ P + +QL Sbjct: 301 KRYTFLEETADEDTLLRVTTKLFNEIEFSGPIRLIGMSVSHLEAPPLSKQLT 352 >UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=DPO4_DESAA Length = 396 Score = 226 bits (577), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 134/339 (39%), Positives = 197/339 (58%), Gaps = 6/339 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 IIHVDMD F+A+VE+ DNP LR + +GG+ RGV+ +A+Y AR GVRSAMP A Sbjct: 6 IIHVDMDAFYASVELLDNPELRGQCVIVGGA-SNRGVVCSASYEARALGVRSAMPIVTAR 64 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP LP R Y+E S + EIF +YT +EP+SLDEA++DVT S GS IA Sbjct: 65 KLCPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLFGSGEEIA 124 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR+ I + L +TASAG+A K +AKIASD+ KPNG V+ + FL LP++++ G Sbjct: 125 ANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPADQTQEFLDPLPISRLWG 184 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG S KL ++G++T DV+K ML FG+ G +++ ++G+D+R V KS+ Sbjct: 185 VGPASRNKLISLGVKTIRDVRKLTQEMLSANFGRNGEVIYAFARGMDDRPVEPPGAAKSI 244 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G E T +++ E + L + RR+ K + +K+K+ DF Q T+ Sbjct: 245 GREITFDRNVYTLEEAYKWMLFLSERVARRMRKEEATGRTV--NIKVKYADFIQVTRSVT 302 Query: 304 W--PRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLL 339 P + ++ A+K + G + VRL+G+ ++ L Sbjct: 303 LESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQL 341 >UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermophilum RepID=DPO4_SYMTH Length = 361 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/360 (41%), Positives = 193/360 (53%), Gaps = 30/360 (8%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 +IH+DMD FFA++E RDNP LR P+ +GGS RGV+ST +Y AR+FGVRSAMP+ AL Sbjct: 7 VIHLDMDAFFASIEQRDNPRLRGKPVIVGGSPNSRGVVSTCSYEARRFGVRSAMPSREAL 66 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP + Y +R I R+T IEPLS+DEA+LDV+ A +A Sbjct: 67 RLCPQAVFIRPNHAKYAAVGRQVRAIMRRFTDVIEPLSIDEAFLDVSGQ-----DAVRVA 121 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 +E+++ I EL LT SAGV+ KFLAK+ASDM KP+G VIT L TLP+ K+ G Sbjct: 122 RELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLPVRKLWG 181 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG S L A+G+ TCGD+ D L K FGK L ++GID R V R KS+ Sbjct: 182 VGPASEQALHALGIYTCGDLLAYDPDTLRKHFGKRADELILLARGIDPRPVVPYREAKSI 241 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFD--------- 293 G E T D ++ER L L + L AR VK+K++ Sbjct: 242 GEENTFPVDQTDREYLSRLLERYADNLAEELRRQG---LYARTVTVKIKWNVFVEGGPKG 298 Query: 294 -DFQQTTQEHVWPR-LNKADLIAT------ARKTWDERRGGRGVRLVGLHVTLLDPQMER 345 DF Q T+ P N A I AR W+ GR VRL+GL V L Q E+ Sbjct: 299 GDFLQITRSQTLPMPTNDARTIGRVAREIFARVEWE----GRKVRLLGLSVHNLVKQGEQ 354 >UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU3_PELCD Length = 399 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 137/342 (40%), Positives = 200/342 (58%), Gaps = 9/342 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD F+A+VE D+P L+ P+ +GG R R GV+ +Y AR FG+ SAMP Sbjct: 9 RIILHLDMDAFYASVEQLDSPELKGQPVVVGGHRSR-GVVCACSYEARTFGIHSAMPMSR 67 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP + P R Y+E S + +IF RYT +EPLS+DEA+LDVT S G Sbjct: 68 ALRLCPQAIVQPVRMARYQEISRQVFDIFGRYTDLVEPLSVDEAFLDVTASRRLFGEGWD 127 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++IR+ + +EL L SAG+AP KFLAK+AS+ KP+G F + P V FL +LPL ++ Sbjct: 128 IAEKIRRDVRDELGLPISAGIAPNKFLAKLASEQAKPDGVFQV-PERVDDFLLSLPLKRL 186 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V L+ MGLRT D++ D + + FG+ G L + + G DER V +R K Sbjct: 187 WGVGPVLLKSLQKMGLRTVADLRHMDRADMERCFGQAGERLIQLAHGEDERPVEPQRSLK 246 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQ 300 S+G E T +DI E E + L +ER A+++ LI +K+K+ DF T+ Sbjct: 247 SIGHEDTFDQDIF---ERETMHVALLDLVERVAARLRKHGLIGTTLTLKVKYADFSTVTR 303 Query: 301 EHVWPR--LNKADLIATARKTWDERRGGRG-VRLVGLHVTLL 339 + D++ A++ ++ G+ VRL+G+ + L Sbjct: 304 SRSVADGICHARDMLHLAKQLLEKTEAGKKPVRLLGVSLANL 345 >UniRef50_B3QD61 DNA-directed DNA polymerase n=6 Tax=cellular organisms RepID=B3QD61_RHOPT Length = 412 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 113/203 (55%), Positives = 146/203 (71%), Gaps = 1/203 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD F+A+VE RD+PALR P+A+GGSRER GV++ A+Y ARKFGVRSAMP+ Sbjct: 21 RKIIHVDMDAFYASVEQRDDPALRGKPVAVGGSRER-GVVAAASYEARKFGVRSAMPSVT 79 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + CP L + RF+ YK S IREIF+ +T+ IEPLSLDEAYLDVT+++ A Sbjct: 80 AKRQCPDLIFVKPRFEVYKAISQQIREIFAEHTAIIEPLSLDEAYLDVTENLQNIPLARD 139 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA IR I L ASAG++ KFLAK+ASD KPNGQ+VI+P P+F++ LP+ K Sbjct: 140 IALAIRAKIKEVTGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGPSFVEGLPVGKF 199 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQ 204 G+G +AAK A+G+RT D++ Sbjct: 200 HGIGPATAAKFNALGIRTGSDIR 222 >UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DPO4_BACCR Length = 415 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 206/351 (58%), Gaps = 14/351 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+HVDM+CFFA+VE+ +P+L+ P+A+ G+ +ER+G+I T +Y AR++G+R+ MP Sbjct: 13 RVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLW 72 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L + F Y+EAS + ++ SR+T +I+P+S+DE YLD+TD + GS Sbjct: 73 EAKRLCPQLVVRRPNFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITD-CYALGSPL 131 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+ I+Q + ELQL S G+AP FLAK ASDM KP G V+ ++P + L + Sbjct: 132 EIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLSVEA 191 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL- 239 + G+G+ +A KL + + T + K D ++ + GK G L +R++G D+R+V+ ++ Sbjct: 192 MHGIGEKTAEKLNEIHIHTIEQLAKGDEHIIRAKIGKHGIDLQKRAKGTDDREVDPSQMG 251 Query: 240 -RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KSVG T ++D+ E ++ERL + +RL K L+ + +K+ D + Sbjct: 252 QHKSVGNSMTFSKDMDEEKELLDMLERLSKSVSKRLQ--KRTLVSYNIQIMIKYHDRRTV 309 Query: 299 TQEH-----VWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 T+ +W + D+ A + W + G VRL+G+ T ++ + E Sbjct: 310 TRSKQLKNAIW---EERDIFQAASRLWKQHWDGDSVRLLGVTATEIEWKTE 357 >UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8L2_NATTJ Length = 408 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 210/359 (58%), Gaps = 12/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+I+H+DMD F+A+VE RDNP L D P+ IGGSR RGV+ST Y ARK+G+ SAMP Sbjct: 14 RQILHIDMDAFYASVEKRDNPELEDKPVIIGGSR--RGVVSTCCYKARKYGLHSAMPMYR 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH L D Y+ S I++IF +T +EPLSLDEA+LDVT S++ G A Sbjct: 72 AQRLCPHGVYLRPDMDKYRRVSQEIKKIFLEFTPLVEPLSLDEAFLDVTGSLNLFGDAVN 131 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++I+ I ++LQLT S GVA KF+AK+ASD+ KP G + + FL LP+ K+ Sbjct: 132 IAEKIQTQISDQLQLTCSIGVATNKFIAKVASDLKKPAGLTHVPTGKEQDFLAPLPVDKL 191 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKC-----DLVMLLKRFGKFGRILWERSQGIDERDVNS 236 GVG+ + A++++ G T G++Q+ ++ L K F L ++G D+R+V Sbjct: 192 WGVGEKTTARIKSRGYHTIGELQQMLAKAQNINSLAKSFNITEDTLL-LAKGYDDREVVP 250 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDF 295 E KS+G E+T A+D+ S+ +I L E+ A+++ + VK++ F Sbjct: 251 EEPPKSIGQEKTFAQDLTAGSQYNQLIPHLLKFSEQVGARLRKAGYKGKTVTVKIRDSRF 310 Query: 296 QQTTQEHVWPRLNK-ADLIATARKTWDER--RGGRGVRLVGLHVTLLDPQMERQLVLGL 351 + T++ P ++ ++ A A++ + +RL+G+ V+ L ++QL L + Sbjct: 311 KTWTKQKTVPETDQDKEIYAHAQELLQNMNLKPSDEIRLLGVTVSNLVSSTQQQLSLDM 369 >UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteobacteria RepID=A0LG84_SYNFM Length = 425 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/351 (36%), Positives = 197/351 (56%), Gaps = 8/351 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+I+HVDMD F+A+VE D P + P+ +GG+R RGV+S A+Y AR+FGV SAMP Sbjct: 35 RRIMHVDMDAFYASVEQADRPEFKGKPVIVGGAR--RGVVSAASYEARRFGVHSAMPVFQ 92 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LP R YKE S + +I + +E +S+DEA++D+T + HGS Sbjct: 93 AKRLCPGGIFLPVRMGRYKEVSKVVMDILCGISPLVEQISIDEAFVDITGTEALHGSPES 152 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + ++ I ++T S G+AP KF+AKIASD++KP+G ++ V AFL LP+ +I Sbjct: 153 LGRRVKSQIRAATRVTCSVGIAPGKFVAKIASDIHKPDGLTIVEDDRVEAFLAPLPVERI 212 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+GK ++ L ++G+R GDV + +KR G +G L ER++G+D V + K Sbjct: 213 PGIGKKTSEALRSLGVRAIGDVLRFPASFWVKRLGAWGVKLHERARGVDPAPVIAYSQAK 272 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQ 300 S E T ED+ + E + + L+ + E +++ + R +K+KF DF T+ Sbjct: 273 SCSAEDTFPEDV---DDVETLEKWLFVQSEEVGKELRRESFRGRTVTLKVKFADFSSITR 329 Query: 301 EHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 H + TA + + R VRLVG+ V+ L E++ V Sbjct: 330 SHTLREATDCTQLIFGTASRLLRALKLNRKVRLVGVGVSNLSAMPEQKPVF 380 >UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R0_DESRD Length = 397 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 132/344 (38%), Positives = 195/344 (56%), Gaps = 10/344 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA++E +D P L+ P+ +GG RGV+S A+Y AR+FGVRSAMP Sbjct: 3 RWILHVDMDAFFASIEQQDYPELQGRPVIVGGGE--RGVVSAASYEARRFGVRSAMPISQ 60 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP+ GR YKE S + + ++ +E S+DEAYLD+T + G Sbjct: 61 ARKLCPNGNFCHGRHKRYKELSRQVMTVLDGFSPCVEQASIDEAYLDITGTERLLGPPGE 120 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + ++Q I L+AS G+AP KF+AKIASD +KP G I ++ FL LP+ K+ Sbjct: 121 VGRALQQAIRVRTGLSASIGIAPNKFVAKIASDWDKPGGLTWIRAEQLQTFLDKLPVRKL 180 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVG ++A LE +G+ + G V++ R G+ G+ LW R+ GID+ +V K Sbjct: 181 PGVGPRTSALLERLGVESVGAVRRFSEAFWTDRLGEGGKQLWARAHGIDDSEVQPYHAPK 240 Query: 242 SVGVERTMAEDIHHWSECEAI-IERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT 299 S G E T+ +D +E EAI I L E ER +++ +++ A +K+++DDF T Sbjct: 241 SCGAEHTLPQD----TEDEAILISWLLHEAERIGRELRREVMEAGTVTLKIRYDDFTTFT 296 Query: 300 --QEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP 341 ++ P + DL + +++ R VRLVGL L P Sbjct: 297 RCRKLSPPTQSTQDLYSAGVTLLRQQQLQRPVRLVGLSAGNLAP 340 >UniRef50_UPI00019102E2 DNA polymerase IV n=4 Tax=cellular organisms RepID=UPI00019102E2 Length = 109 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 102/109 (93%), Positives = 106/109 (97%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPAR+FGVRSAMPT Sbjct: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARQFGVRSAMPTA 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV 109 MALKLCPHLTLLPGRFDAYKEAS H+R+IFSRYTS IEPLSLDEA+LDV Sbjct: 61 MALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPLSLDEAWLDV 109 >UniRef50_C0ZB00 DNA polymerase IV n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB00_BREBN Length = 350 Score = 213 bits (542), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 138/362 (38%), Positives = 193/362 (53%), Gaps = 30/362 (8%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+KI+H+D+D FFA+VE D P LR P+ +GG+ RGV+ST +Y ARK+GVRSAMP Sbjct: 1 MKKILHLDIDAFFASVEQLDRPELRGKPVIVGGT-GNRGVVSTCSYEARKYGVRSAMPVA 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 MA K CP LP R+ Y E S +R+IF+ YT R + + LDEAYLDV+ + +A Sbjct: 60 MARKKCPQGYYLPVRYSRYIEKSAEVRQIFTSYTERYQTVGLDEAYLDVSH----YENAV 115 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++I++ I E LT S G++ LAKIASD+ KP+ +I P + L+ LP+ Sbjct: 116 PIARDIKRRIKRETGLTCSIGLSYNMSLAKIASDLKKPDAFVIIRPEQALDVLRPLPIGT 175 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVGK S L G+ T D + L FGKFGR L+ R++G D R++ +R Sbjct: 176 LHGVGKKSQELLAKKGIETVEDFWRLSLDEATTLFGKFGRSLYYRARGEDNREIEMDRAP 235 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELER--RLAKVKPDLLIARQGVKLKFDDFQQT 298 KS E T+ D+ I L E+E R V+P + +K+K+ DF Q Sbjct: 236 KSSSRETTLPFDLFDRDAIAPIATSLLREVEEDIREEGVEPQTIT----LKIKYADFTQR 291 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGR--------GVRLVGLHVT-LLDPQMERQLVL 349 T++H A A W E GVRLVG+ + + Q ER L Sbjct: 292 TKQHK----------AVAGANWQELLDDLLDAFDYTAGVRLVGVGFSNFAEQQGERYEQL 341 Query: 350 GL 351 + Sbjct: 342 SM 343 >UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LNT4_9FIRM Length = 403 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/346 (37%), Positives = 190/346 (54%), Gaps = 7/346 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD F+A+VE RD+P R P+ +GGS RRGV++TA+Y AR FGV SAMP Sbjct: 3 RWIMHVDMDAFYASVEQRDHPEWRGKPVIVGGS-SRRGVVATASYEARAFGVHSAMPAVK 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + RFD YK SN I EI Y IEPLSLDEA++D++ + + Sbjct: 62 ARELCPDAVFVLPRFDVYKSVSNEIHEIMLHYAVEIEPLSLDEAFMDISGLCGKYETLGA 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + I+ I + L ASAG+AP KFLAK+ASD++KP+G +I + L LP+ ++ Sbjct: 122 VGRAIKAEIKEKTGLVASAGIAPNKFLAKLASDLDKPDGLRIIPYGKEKEILAPLPVRRL 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V+ KL G T GD+QK L G ++ S GID+R V + R K Sbjct: 182 WGVGHVTERKLRNAGFLTIGDIQKAPFAKLASVLGNQASLIQRLSFGIDDRAVEASRRIK 241 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQ 300 S+G E T +D+ ++ + I + +RL + K L R +K++F F+ T+ Sbjct: 242 SIGDESTYEKDLTESADIDRQIAIHSDVVAKRLRRHK---LAGRTISLKVRFASFRTVTR 298 Query: 301 EHVWPRLN--KADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 + ++ A A + GVRL+G+ + L P +E Sbjct: 299 SLSLEEGTDLQEEIYAAALELKKRIYMNEGVRLIGVTASNLAPPLE 344 >UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=uncultured marine microorganism HF4000_008B14 RepID=B3T119_9ZZZZ Length = 380 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 191/356 (53%), Gaps = 15/356 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H D+D F+AAVE+ D+P L + +GG E RGV++TA+Y AR FG+ SAMP Sbjct: 18 RHVLHADLDAFYAAVEVLDDPDLAGKAVMVGGDPENRGVVATASYEARVFGIHSAMPMRT 77 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++LCPH ++ RFD Y++ S + ++F +T +EPLS+DEAYLD+T++V Sbjct: 78 AVRLCPHGIIIHPRFDRYRQLSRAVMDVFHDFTELVEPLSMDEAYLDITEAVDAGRLPLA 137 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA E++ + + LT S G K +AKIASD++KP+G V+ P E FL L + K+ Sbjct: 138 IALELKNRVHENIGLTLSVGAGTSKSVAKIASDLHKPDGLVVVAPGEEREFLAPLAVGKL 197 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + +L A G+ T GD+ +RFGK + R+ G D V +ER K Sbjct: 198 WGIGPKTGQRLRADGIETIGDLASQSTGWFQRRFGKRALDVQSRAMGEDREPVRTEREAK 257 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDL----LIARQ-GVKLKFDDFQ 296 SV E T A D+ LYP L R +V L L + VK + DF Sbjct: 258 SVSAESTFATDLSGEGT-------LYPHLSRLAGRVAQHLEGKQLKGKTVTVKARLADFT 310 Query: 297 QTTQEHVWPRLNKAD--LIATARKTWD-ERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T++ P +D ++ TA + + E GR RL+G+ V+ E QL L Sbjct: 311 TFTRQTTLPYPTGSDTVILETAWRLFSRELTPGRSFRLLGVGVSGFTEDEEFQLPL 366 >UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIK9_HALO1 Length = 409 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/263 (44%), Positives = 159/263 (60%), Gaps = 2/263 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++HVD+D FFA+VE RD+P+LR P+ +GGS ER GV++ A+Y AR++GV SAMP + Sbjct: 6 RTVLHVDLDAFFASVEQRDDPSLRGKPVLVGGSAER-GVVAAASYEARRYGVHSAMPMAV 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP ++ Y EAS I ++ +EPLSLDEA+LD+T S G A Sbjct: 65 ALRRCPQAVVVRHSMGRYAEASRAFFAILDHFSPLVEPLSLDEAFLDLTGSERLLGDART 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +AQ I+ + EL L S GVA KFLAKIASD++KP+G V+ P V +FL LP++++ Sbjct: 125 VAQTIKDRVRAELSLVVSVGVASTKFLAKIASDIDKPDGLCVVEPDRVESFLHPLPVSRL 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVG V+ KL MGLRT GDV + +L R GK G L + G D R V Sbjct: 185 WGVGAVTQDKLHQMGLRTIGDVARYPSSVLSARLGKSMGAHLSALASGYDPRPVERPGKP 244 Query: 241 KSVGVERTMAEDIHHWSECEAII 263 S+G E T D+ S+ A++ Sbjct: 245 VSIGHEETFEVDLGRKSDIAAVL 267 >UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCT4_9FIRM Length = 397 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/352 (38%), Positives = 192/352 (54%), Gaps = 23/352 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA+VE D+P R+ P+ +GG RGV+STA+Y AR+FGV SAMP Sbjct: 10 RWIMHVDMDAFFASVEQLDHPEYRNRPVIVGG-LSGRGVVSTASYEARRFGVHSAMPMKE 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP + GR+ Y E S IR+IF ++ +EPLS+DEA+LD+T G Sbjct: 69 ALERCPKGIFVEGRYGRYLELSQKIRQIFHEFSPLVEPLSIDEAFLDLTGMERLVGDIPA 128 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + I++ I E LTAS G+AP KFLAK+ASD+ KPNG +I +E + + LP+++I Sbjct: 129 LGLRIKERIKKETGLTASVGLAPNKFLAKLASDLKKPNGLVIIRQSEAASRIAPLPISRI 188 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G SA+ L G+RT GD+ CD L FGK + + G+D R V + R+ Sbjct: 189 FGIGARSASLLTRFGIRTIGDLAACDASFLSPLFGKNTETILRFAHGLDNRPVIPDEKRQ 248 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ- 300 S+G E T +D+ + I+ L E+ RL L +K+K DF+ T+ Sbjct: 249 SLGRELTFEKDLRDHAVILEILWNLSQEVGFRLRSA--GLSGYTVTLKMKTQDFKVHTRS 306 Query: 301 ----------EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQ 342 E + R+ I T R + VRL+G+ V+ L PQ Sbjct: 307 LSSDLPLQLDEEIMERVK----ILTRRNPLRD-----PVRLLGVTVSHLVPQ 349 >UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli RepID=Q38YP4_LACSS Length = 376 Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 198/362 (54%), Gaps = 18/362 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAI-------GGSRERRGVISTANYPARKFGVR 54 RKIIH+DMD F+A++E R+ P LR P+ I GG +GV++TANY AR++GV Sbjct: 15 RKIIHIDMDAFYASIEEREQPDLRQKPLIIARDPSDTGG----KGVVTTANYVARQYGVH 70 Query: 55 SAMPTGMALKLCP-HLTLLPG-RFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS 112 SAM A +L P H + F Y+ S I +IF T +IEP++ DEAYLDVT++ Sbjct: 71 SAMSAQKAAELIPKHQAVFKTPNFPLYQSVSAQIHDIFHTVTDKIEPIAFDEAYLDVTEN 130 Query: 113 VHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAF 172 + +++ I E QL +SAG++ KFLAK+ASD KP G+ ++ P + AF Sbjct: 131 KLGLTHTIEVVAYLQKAILEETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAF 190 Query: 173 LQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDER 232 L LP+ K GVG+ + K++ +G+ T D+ + L++ FGK G L+ +GID R Sbjct: 191 LSRLPIEKFRGVGQKTVPKMQDLGIMTGADLLAQSEMFLMQHFGKLGYGLYRHVRGIDNR 250 Query: 233 DVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 V +R RKS+G E T + + + + ++ L EL +RL K + L +K++ Sbjct: 251 PVEYQRERKSIGNEHTYGQPLISEEQVQVQLKSLAVELAQRLRKNQKHGLTVV--LKVRN 308 Query: 293 DDFQQTTQEHVWPRL--NKADLIATARKTWDE-RRGGRGVRLVGLHVTLLDPQMERQLVL 349 ++ T+ N A+L A A + W + G+RL+G+ VT L PQ + L Sbjct: 309 RQYETITKRKTLGEYVGNAAELEAIANQIWQSIGQAEVGIRLLGITVTNLAPQTFENITL 368 Query: 350 GL 351 L Sbjct: 369 PL 370 >UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJE1_DESAH Length = 384 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 189/338 (55%), Gaps = 9/338 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFAA+E RD+P P+ +GG+ +R V++TA+Y AR+FG+ SAMP MAL Sbjct: 2 ILHMDMDAFFAAIEQRDHPETAGRPLVVGGN-SKRSVVATASYEARRFGIHSAMPMFMAL 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 C HL ++P Y S I + + +T +E +S+DEA+LD+T GS I Sbjct: 61 DKCSHLIVIPPDKSKYAAVSGQIMTLLNEFTPLVEQVSIDEAFLDITGCERLFGSVEKIC 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 I+ I E LT S G + +KFLAKIASDMNKP+G +I + P +QTL + K+PG Sbjct: 121 VAIKDRIKQETGLTCSIGASHLKFLAKIASDMNKPDGIHIIKRTDTPEVIQTLAIKKVPG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG+ + +++ +G+ T GD+ + +L K+FGKF L S+GID + + KS+ Sbjct: 181 VGERAMDQMKQLGIITLGDISRIPHPILEKKFGKFATDLLNFSRGIDPSIIGTSGPIKSI 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELER--RLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 E T+ D + + + L +R R + K +LL +KLKF DF Q T++ Sbjct: 241 SSESTLEND---TLDMVVMKKHLLAHAQRVGRQLRAK-NLLATNITIKLKFSDFTQITRQ 296 Query: 302 H--VWPRLNKADLIATARKTWDERRGGRGVRLVGLHVT 337 + P + A +++ R +RL+G+ V+ Sbjct: 297 TKLMVPICASTAIYREACTLFEQTAKTRKIRLLGVGVS 334 >UniRef50_B5BUV5 DNA polymerase kappa n=2 Tax=Agaricales RepID=B5BUV5_COPCI Length = 707 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 15/260 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+A VE+ +P+L+ P A+G RGV+STA+Y ARK+GVRS M + Sbjct: 106 IVHVDMDAFYANVEILRDPSLKGKPFAVG-----RGVMSTASYEARKYGVRSGMAGFIGK 160 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLI 122 KLCP L +P FD Y + S I IF RY + P +DEAYL+VT HG + + Sbjct: 161 KLCPQLIFVPAHFDLYSKTSAQIMSIFRRYDPTMCPAGVDEAYLNVTAYCKQHGKTVDEV 220 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPLAK 180 E+R+ +F+E QLT SAG+AP K LAKI SD NKPNGQF + P + AF+ +L + K Sbjct: 221 VSEMRKAVFDETQLTVSAGIAPNKMLAKICSDKNKPNGQFKLEFEPDSIKAFMHSLSIRK 280 Query: 181 IPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLKRFGKFGRILWERSQGIDERDV--NS 236 +PGVG+V+ L+++G+RTCGD+ Q+ + ++ KRFG L GI V ++ Sbjct: 281 VPGVGRVNERLLDSIGIRTCGDIYQQRGVIALMDKRFGL--DFLLRVYLGIASNHVAPHA 338 Query: 237 ERLRKSVGVERTMAE-DIHH 255 RKS+G ERT + D +H Sbjct: 339 REERKSIGAERTFSTLDSNH 358 >UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteobacteria RepID=Q2RNH1_RHORT Length = 421 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/346 (38%), Positives = 190/346 (54%), Gaps = 10/346 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I H+D D F+A+VE RDNP+LRD P+ +G R GV +TA Y AR+FG RSAMP L Sbjct: 38 IAHIDCDAFYASVEKRDNPSLRDRPLIVGHPGGR-GVATTACYIARRFGARSAMPMFKCL 96 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP ++P YK S +R I T R+EPLSLDEAYLD+++ H ++ Sbjct: 97 ELCPEAVVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEHRFARPPAVS 156 Query: 124 -QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 I + + E+ +T S G++ +FLAK+ASDMNKP G VI AE PA L +P+ ++ Sbjct: 157 LATIARRVEREIGITVSIGLSSNRFLAKLASDMNKPQGFTVIDEAEAPALLAPMPVKRLH 216 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVG + +L +GL T GD+Q LL RFGK GR L + G R ++ +R KS Sbjct: 217 GVGAATERRLAELGLHTIGDLQGRPEADLLARFGKIGRALHAHAWGRGGRTISPDRETKS 276 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAK--VKPDLLIARQGVKLKFDDFQQTTQ 300 + E T D+ + + R L R+A+ + L A +KLK DF+ T+ Sbjct: 277 ISAETTFERDLSRLPD----LARALGPLSERVARALTRNALAGATVVLKLKTHDFRILTR 332 Query: 301 E-HVWPRLNKADLIA-TARKTWDERRGGRGVRLVGLHVTLLDPQME 344 + +A++IA AR+ + GR RL+G+ + L P E Sbjct: 333 HARLGDPTARAEVIAGAARRLLERETDGRRFRLIGVGMADLRPGSE 378 >UniRef50_B1MZW7 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Leuconostoc RepID=B1MZW7_LEUCK Length = 361 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 196/358 (54%), Gaps = 16/358 (4%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIG---GSRERRGVISTANYPARKFGVRSAM 57 +RKI+HVD+D F+A VEMRDNP LR+ P+ I RGV++TANY AR GV SAM Sbjct: 10 LRKILHVDIDAFYAQVEMRDNPELRNRPLIISRDPAETGGRGVVATANYVARALGVHSAM 69 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 A +L P L F Y++ S I IF +T +IEP++LDEAYLD+TDS H Sbjct: 70 SAVEARQLAPEGVFLSPNFKKYRQVSKTIHHIFHTFTEKIEPVALDEAYLDMTDS---HL 126 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 S IA +IR I E LT+S G++ K LAK+ S+ NKPNG VIT + +FL LP Sbjct: 127 SGASIAAQIRHQILKETGLTSSIGISHNKLLAKLGSEFNKPNGVTVITHDNMLSFLAELP 186 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + GVG + AK A+ + +++ L FGK G L+ +++G+ +V + Sbjct: 187 IGDFRGVGAKTKAKFSALKVENGLQLRQLPKETLRGLFGKMGENLYWQTRGVHFGEVQWQ 246 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQ 296 R ++SVG E T IH+ + ++L E+ +A +K L R +K++ D F Sbjct: 247 RQQQSVGKEATFRYFIHNEIDVHKAFKQLANEM---IAALKVKQLTGRTLNIKIRDDAFN 303 Query: 297 Q----TTQEHVWPRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVL 349 T+E WP L++ + TA+ ++E + VRL+GL ++ L ++ L Sbjct: 304 TITRAITRETPWP-LSETLITQTAQSVFEEVIQTPFSVRLLGLSISNLQSSTFEEMTL 360 >UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales RepID=Q2IM85_ANADE Length = 418 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 136/351 (38%), Positives = 190/351 (54%), Gaps = 14/351 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+D+D F+A+VE D+P LR P+ +GG+ RGV+ A+Y AR+FGVRSA+PT Sbjct: 11 RTILHLDLDAFYASVEQLDHPELRGRPVIVGGT-GNRGVVCAASYEARRFGVRSALPTAR 69 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LP RF Y E S + +++ RYT +EPLSLDEA+LDVT S HG Sbjct: 70 ARRLCPDGVFLPPRFGRYSELSRRVFDVYRRYTPLVEPLSLDEAFLDVTASRALHGGGPD 129 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I+ + E L SAGVA VK AKIA+D+ KP+G V+ P V AFL LP+ ++ Sbjct: 130 IARAIKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDGLVVVPPGGVAAFLAPLPVGRL 189 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 GVG+V+ A L +G+ T GD+ + L G R L + G D R+V + Sbjct: 190 WGVGEVTEAALRRIGVATIGDLARMPESALAAALGPTHARGLRALACGEDPREVVPDEEA 249 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRL--AKVKPDLLIARQGVKLKFDDFQQT 298 KSVG E T +D+ E + + RRL A + ++ +K+K+ DF Sbjct: 250 KSVGAEDTFDQDLLGRPALERELLAQAGTVARRLRAAGLAGHVVT----LKVKYADFTLV 305 Query: 299 TQEHVWPRLNKADL----IATARKTWDERRGGRGVRLVGLHVTLLDPQMER 345 T+ R D A A+ + R R VRL G+ V+ ER Sbjct: 306 TRRVTLERATDDDRAIFDAACAQLARVDLR--RPVRLTGISVSGFAGDEER 354 >UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class) RepID=A5CQW8_CLAM3 Length = 430 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 189/356 (53%), Gaps = 19/356 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFAAVE+ + P LR P+ +GGS RGV+++A Y AR+FGVRSAMP AL Sbjct: 23 ILHIDMDAFFAAVELLERPELRGTPVIVGGS-SGRGVVTSATYEARRFGVRSAMPMAQAL 81 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP T++ G + Y S + IF T +EPLS+DEA+LDV + GS I Sbjct: 82 RLCPQATVIGGHMEKYAHWSRVVMGIFRDVTPLVEPLSIDEAFLDVAGARGLFGSPAEIG 141 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR+ + E LT S G A KF+AK+AS KP+G VI AE FL LP+ + G Sbjct: 142 AMIRRRVHAETGLTCSVGAASTKFVAKLASTRCKPDGLLVIPAAETLPFLHALPVGALWG 201 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRKS 242 VGK + L GLRT D+ L L G+ G L + S G D R V++ R KS Sbjct: 202 VGKTTEEALLRRGLRTVADIADTPLPALQSMLGESAGARLHDLSWGRDPRRVSTHREEKS 261 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQE 301 +G E T +D+ ++ E + L + R +++ L AR +KL++ DF+ T+ Sbjct: 262 MGHENTFHDDV---TDPEIVRRELLGQATRVAERLRRAGLTARTVSLKLRYSDFRTITRS 318 Query: 302 HVWPRLNKADLIATARKTWDE--------RRGGRGVRLVGLHVTLLDPQMERQLVL 349 ++ AR+ +DE R G +RLVG+ LD R + L Sbjct: 319 RTL-----SEPTDVARRIYDEIRDVYEQVARPGDRIRLVGVRAEQLDDADNRAVAL 369 >UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQX0_9ACTO Length = 445 Score = 206 bits (524), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 135/353 (38%), Positives = 191/353 (54%), Gaps = 11/353 (3%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FF +VE+ D P L P+A+GG+ RGV+S A+Y AR+FGV SAMP AL Sbjct: 23 ILHVDMDAFFVSVELLDRPELAGKPVAVGGAE--RGVVSAASYEAREFGVNSAMPVARAL 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 + CPHLT++P R Y E S I +I T +E LS+DEA+LDV + G IA Sbjct: 81 RACPHLTMIPPRPGRYSEVSRQIMDILHDVTPLVEKLSVDEAFLDVGGARRLMGGPVRIA 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 ++R I E+ + AS G+A K +AKIAS KP+G +I + AFL LP+ + G Sbjct: 141 TDLRARIRREVGVPASVGIAATKHVAKIASAHAKPDGLLLIPRSATIAFLHGLPVGALWG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRKS 242 VG+ + A+L G+ T G++ L + G+ G L+ + G D R V + R KS Sbjct: 201 VGEKTRARLANQGIETVGELADAGPERLARILGRAHGTHLYRLAMGQDPRPVQTSREEKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQE 301 +G E T E + + E I+ RRL + L AR +K++F DF T+ Sbjct: 261 IGKEETFFEHVADRGKLERILLAQAHATARRLRRAH---LTARTVAIKVRFADFTTITRS 317 Query: 302 HVWPRLNK--ADLIATARKTWDE-RRGGRGVRLVGLHV-TLLDPQMERQLVLG 350 + R ADL A A+ +D G G+RL+GL ++D + QL LG Sbjct: 318 TTFARPTDLAADLYAGAKHLFDSVAVSGEGLRLLGLRAEQIVDQREGVQLALG 370 >UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM3_DESBD Length = 412 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/344 (39%), Positives = 178/344 (51%), Gaps = 18/344 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FF +VE D+P L+ P+ IG S RGV S A+Y ARK+G+RSAMP Sbjct: 13 RVILHLDMDAFFTSVEQADDPLLQGKPVVIGQSL--RGVASAASYEARKYGIRSAMPIVQ 70 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCPH LPGR Y+E S I I +E S+DEAY D++ + G Sbjct: 71 AKKLCPHAVFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYADISGTRRIFGPPEN 130 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ ++ I LT S G+AP KFLAKIASD NKP G I PA+VPAFL+ LPL +I Sbjct: 131 IARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKPGGLTFIPPADVPAFLRDLPLGRI 190 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGK +L +G+ T V + GK G L +R+ GID+ V K Sbjct: 191 PGVGKQFQEELRRIGVTTIPHVLAHPRTYWNELMGKRGAFLHDRACGIDDSPVVPGSDPK 250 Query: 242 SVGVERTMAED------IHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 S E T+ D + W +A ER+ EL R L K + + K+KF DF Sbjct: 251 SCSAENTLDRDTLDRTLLERWLLIQA--ERIGREL-RGLGKKGLTVTL-----KIKFQDF 302 Query: 296 QQTTQEHVWPRLN--KADLIATARKTWDERRGGRGVRLVGLHVT 337 T+ R ++ AR + R VRL+G V+ Sbjct: 303 SSITRSRTLARPTDITTEIFEAARMLLTAEKLPRPVRLIGTGVS 346 >UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0S0R3_FINM2 Length = 347 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 190/345 (55%), Gaps = 8/345 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +H D+D FFA+ E+ DNP L+ +P+ +GG R +RG+I+TANY ARK+G+ SAMP A K Sbjct: 6 LHFDLDAFFASCEILDNPKLKHVPMVVGG-RSQRGIITTANYEARKYGLHSAMPIFQAKK 64 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQ 124 + P+L ++ F+ Y+ S + ++ S ++++I+ +S+DE +D++ H +A Sbjct: 65 IVPNLVIVAPDFEKYRRNSEKVFKVLSSFSNKIQKMSIDEGCMDIS---HIRMDRLELAN 121 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 I++ + + L+ S G++ LAK+ASD NKP+G +IT ++P L L + KI G+ Sbjct: 122 LIQENVRIKTGLSISIGISYNMSLAKLASDWNKPHGIKIITQDDIPNILLDLKVGKIQGI 181 Query: 185 GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVG 244 G+ S KL +G++ D+ L + FGKFG ++++R +GIDER ++ R+RKS+G Sbjct: 182 GRKSEEKLNKIGIKKVSDLYDLSRNNLRELFGKFGEVIYDRIRGIDERQLDLSRIRKSIG 241 Query: 245 VERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW 304 VE T D+ +++E EL L K R +K+K +DF T+ Sbjct: 242 VEYTFERDLKNYNELLNKASEFSEELSDDLHKKNIKAKTIR--IKIKLNDFSVITKSMTL 299 Query: 305 PRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 + +D+ + + + VRL G+ L QL Sbjct: 300 EEYISDSSDIFRIVKYLVVNTKIEKSVRLFGITAANLSDTTFEQL 344 >UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I5X9_METB6 Length = 365 Score = 204 bits (518), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 192/357 (53%), Gaps = 16/357 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 R ++H DMDCF+AAVEM D+P + + +G + RGV+STA+Y AR FGVRSAMP Sbjct: 11 RIVLHADMDCFYAAVEMHDHPEIAGKAVVVGADPQGGAGRGVVSTASYEARAFGVRSAMP 70 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A +LCP L Y S I IF R++ +S+DEA+LD++ V + Sbjct: 71 ISQAYRLCPGAVYLRPDMARYAAVSAEIMGIFKETGYRVQQVSIDEAFLDIS-PVRSFDT 129 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A ++QTI + + +T S GVAP K +AKIAS KP+G V+TP FL LP+ Sbjct: 130 ARDLAVRLKQTIRDRVGITCSLGVAPSKIVAKIASGHQKPDGMTVVTPDSARDFLAPLPI 189 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 KIPG+G + A++EA+G+ T G++ CD+ +L+ FG+ +L E + G D +V Sbjct: 190 RKIPGIGGKTGAQIEALGITTIGNLATCDIQVLVGAFGRSAGLLREAALGHDNSEVVERD 249 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+ E T A D E A +E L E+ + +A L +++++ F Sbjct: 250 GVKSISKETTFANDTEDPKEIAATMELLVREVAQAIA--DEALQFKTVTIRVRYAGFVSK 307 Query: 299 TQEHVWPRL--NKADLIATA----RKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T+ ++A + A A R+ WD G+ +R +GL ++ L Q RQ L Sbjct: 308 TKARSLLHYHNDEAAIRAAAGELLRELWD----GKPIRRLGLRLSTLRHQDSRQQTL 360 >UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomycetales RepID=C6WDG0_ACTMD Length = 430 Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 188/342 (54%), Gaps = 9/342 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 +++HVDMD F+A+VE+RD P L +P+ +GG+ RGV+++ANY AR+FGVRSAMPT A Sbjct: 29 RMLHVDMDAFYASVEIRDRPELARLPVVVGGT-AHRGVVASANYLAREFGVRSAMPTAHA 87 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATL 121 +L PH LP F Y++ S + E+F + T +EPLSLDEA+LDV ++ + Sbjct: 88 RRLAPHAVFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFLDVGGALRRLRATPAE 147 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA +R + E +T S GVA KFLAK++S M KP+G V+ FL LP+ + Sbjct: 148 IAARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPDGLMVVPKDRALEFLHPLPVGAL 207 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 GVGK +A +L+ +GL T GDV L+ L K G L+ ++G D+R V Sbjct: 208 WGVGKRTAEQLDRLGLETVGDVAAAPLLRLRKAVGVALAEHLYALARGHDDRPVVPYTRE 267 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT 299 KS+G E T ++ H+ +E L ER A ++ L R +K++F DF T Sbjct: 268 KSIGAEETF--EVDHFDRAVLKLELLRLS-ERTAASLRAKGLRGRTVSIKVRFADFTTIT 324 Query: 300 QEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLL 339 + ++ ATA D+ VRL+G+ V L Sbjct: 325 RSKTLRVATDVAREVYATATSLLDDHVPPGAVRLIGVRVEQL 366 >UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GF38_9DELT Length = 409 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 152/252 (60%), Gaps = 1/252 (0%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD FFA++E RD+P LR P+ +G + +RGV++ A+Y AR+FG SA P +A + CP Sbjct: 1 MDAFFASIEQRDDPRLRGKPVLVGHA-GKRGVVAAASYEARRFGCHSAQPMAVARRRCPQ 59 Query: 69 LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQ 128 ++PGR + Y S + EI +T +E LS+DEA+LD++ + HG + A+ IRQ Sbjct: 60 AVIVPGRHEVYLGVSAELFEILEGFTPVVEGLSIDEAFLDMSGTQRLHGPPRVAAERIRQ 119 Query: 129 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVS 188 T+ L+LT S G+A KF+AKIASD +KP+G V+ P AFL LP+ ++ GVG + Sbjct: 120 TVAERLRLTCSVGIASAKFIAKIASDQDKPDGLTVVEPGRERAFLHRLPVRELWGVGPRT 179 Query: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERT 248 LE G+RT GD+ + L L + G+ GR L + S G+D R V+ R RK V E T Sbjct: 180 QEVLERYGVRTIGDIAELGLETLERDLGEHGRHLHQLSVGVDPRPVSPGRERKQVSHENT 239 Query: 249 MAEDIHHWSECE 260 ED+ E E Sbjct: 240 FGEDLRSRPEIE 251 >UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex degensii KC4 RepID=C9RDA6_AMMDK Length = 385 Score = 201 bits (510), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 190/364 (52%), Gaps = 21/364 (5%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M++I+ D+D FFAAVE RD+P LR P+ +GGS RGV++T +Y AR FGVRSAMP Sbjct: 1 MQEILLCDLDAFFAAVEQRDHPELRGKPVIVGGSLTGRGVVATCSYEARSFGVRSAMPLK 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 AL+LCP LLP Y+E + + I+ R+T IE +S+DEAYL V G Sbjct: 61 KALRLCPQAILLPVNISRYREVAAEVLAIYRRFTPFIEVVSIDEAYLGVPS-----GEGL 115 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+ I++ + EL L S GV+ K LAK+A D+ KP G + P EVP L LP+ Sbjct: 116 AVARAIKEAVRKELDLPLSIGVSVNKLLAKVACDLAKPQGLKALWPEEVPQVLWPLPVGV 175 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PG+G + +L+A G++T GD+ L +L G E S G+D R + R Sbjct: 176 LPGIGPKTERQLQAKGIKTVGDLAAAPLYLLKMLLGSEALRFKEYSHGVDRRGLVLSRPP 235 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT 299 S E T +D+ + RL +L RL + + +AR +KL+F DF+ T Sbjct: 236 LSFSKETTFPQDVQEPEVVRGALMRLAEDLGYRL---RQNGYLARSVTLKLRFADFRTVT 292 Query: 300 QEHVWPR-LNKADLIA-TARKTWDERRGGRGVRLVGLHVT----------LLDPQMERQL 347 + N+ LI TA + + + RLVG+ V L D Q ER+ Sbjct: 293 RTRCLAEGTNRDSLIYRTAWELFQKFASSPPWRLVGIKVAELSNWKQLSWLEDEQEERER 352 Query: 348 VLGL 351 +L L Sbjct: 353 MLAL 356 >UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=Q0FEJ5_9RHOB Length = 391 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 109/269 (40%), Positives = 163/269 (60%), Gaps = 3/269 (1%) Query: 6 HVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKL 65 H+D D F+A+VE RDNP +D P+ IGG + RGV+STA Y AR GV+SAMP ALKL Sbjct: 13 HIDCDAFYASVEKRDNPKFKDKPLIIGGGQ--RGVVSTACYIARIKGVKSAMPMFKALKL 70 Query: 66 CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA-TLIAQ 124 CP ++ R DAY +AS I E+ S + IEPLSLDEA++D+ + HG L Sbjct: 71 CPEAIVIAPRMDAYAKASKEINEMMSELSPSIEPLSLDEAFIDLRGTEKLHGEPPALSMA 130 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 + Q I +L+++AS G++ K+LAK+ASD++KP G +I ++ FL + I GV Sbjct: 131 RLVQRIEKQLKISASVGLSYNKYLAKLASDLDKPRGFSIIGKYKIEEFLAPKSIGLIWGV 190 Query: 185 GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVG 244 GKV+ +LE G+R D+Q+ L+ ++ G LW +GID R+V ++ + KS+ Sbjct: 191 GKVAQMRLEQDGIRIFADLQRRSHQELIDKYQNMGDHLWHLCRGIDNRNVIAKNVIKSIS 250 Query: 245 VERTMAEDIHHWSECEAIIERLYPELERR 273 E T + DI++ + + I RL ++ +R Sbjct: 251 KETTFSSDINNIEKLDGYIWRLSEQVSQR 279 >UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=C9KLE5_9FIRM Length = 395 Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 186/346 (53%), Gaps = 14/346 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++HVDMD FFA++E RD+ R+ P+ +GG RGV+ST +Y AR+FGV SAMP Sbjct: 5 RLVMHVDMDAFFASIEQRDHEEYREKPLIVGGL-SGRGVVSTCSYEARRFGVHSAMPIVR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + G + YK S I IF+RY +EPLS+DEA+LD+T S Sbjct: 64 ARRLCPQGIFVEGDYANYKAVSQQIFAIFARYAPVVEPLSIDEAFLDLTGMELLMESPRA 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A++++ I + L AS G+AP KFLAK+ASD+ KP+G +IT A L LP+ +I Sbjct: 124 YAEKLKAEIREKTGLVASVGIAPNKFLAKLASDLEKPDGLVIITEQTKQAVLDPLPVGRI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 GVG+ +AA+LEA+ +RT G +++ L++ FG L + GID R V Sbjct: 184 WGVGQKTAARLEALRIRTIGQLRRTPRERLVRAFGAHMADHLLALASGIDTRPVAPREPA 243 Query: 241 KSVGVERTMAEDIHHWSECE----AIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 KS+G E T DI E A+ E++ L R K + L KL+ DF+ Sbjct: 244 KSIGKEVTFPTDIESAEAVERVLLALSEKVGYRLRRHGCKGRTVQL------KLRLGDFR 297 Query: 297 QTTQEHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLD 340 T+ D + TA + +G+RL+G+ V+ D Sbjct: 298 TYTRSRTLAEATCYDREIYETALAFYRALGVKQGIRLLGISVSGFD 343 >UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacillus RepID=A8YTI5_LACH4 Length = 406 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 188/347 (54%), Gaps = 13/347 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGG---SRERRGVISTANYPARKFGVRSAMP 58 R+IIH+DMD F+A+VE + NP L++ + IG + GV++T NY ARK+GV SAMP Sbjct: 47 RRIIHLDMDAFYASVETQRNPELKNKALVIGQDPRNNGGHGVVATCNYVARKYGVHSAMP 106 Query: 59 TGMALKLCPHLTLLPGR--FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 A+KL P L+ R F Y+ S I T ++E ++LDEAYLDVT + Sbjct: 107 AIKAVKLIPKSELVFVRPDFKKYRSVSAKIHSFMHEITDKVESIALDEAYLDVTHNKLGQ 166 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 A +A +++ I EL L +S GV+ KFLAK+ S+ KP G+ VI P E FL Sbjct: 167 NLAVQVAIGLQRRIRTELGLNSSFGVSYNKFLAKMGSEYAKPFGRTVILPYEAKQFLGMQ 226 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV-- 234 + K PGVG + +L MG+ T D+QK +L+K+F K G L + + GID R V Sbjct: 227 KIEKFPGVGPKTQEQLHEMGIYTGADLQKVADFVLIKKFKKMGYFLAQHAHGIDLRPVIA 286 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +S+ RKS+G+ERT I+ E I LE L K + +K++ +D Sbjct: 287 DSDTNRKSIGMERTYEPAIYTRDEALTHIRHYCKHLEDELK--KRNFFAQTVVIKVRDND 344 Query: 295 FQQTTQEH--VWPRLNKADLIATARKTWDERRG--GRGVRLVGLHVT 337 F T+ P ++ D +AR+ +D+ +G+RL+G+ VT Sbjct: 345 FDTVTKRRKLTKPSNSQYDYYDSARELFDKTSNFLEKGIRLIGVTVT 391 >UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM9_9FIRM Length = 409 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 5/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D++ FFA+ E+ +P+L P+ + G +R V+STA+Y AR+FGV SAMP Sbjct: 15 RVIYHIDLNAFFASAEILLDPSLEGKPVVVSG-LTKRSVVSTASYEARQFGVHSAMPINE 73 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP L ++ G Y++ S +YT R+E S+DE Y D++ ++H Sbjct: 74 ALKLCPQLVVVKGHHGYYEQLSEQFISYVKKYTDRVEQASIDECYADMSQAIHRFPRPLD 133 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A +++Q + +L L S GVAP KFLAK+ASDM KP G V+ EVP L LP+ + Sbjct: 134 LAWQLQQELLTDLHLKCSIGVAPNKFLAKMASDMKKPMGITVLRKQEVPVKLWPLPIEDM 193 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+GK +A +++A+G++T GD+ D L GK +R+ G D+R++ S+ K Sbjct: 194 RGIGKKTAPQMKALGIKTIGDLAAADPEQLRPLLGKNTMTYIQRANGEDDREIISDAEIK 253 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ T+ D E + +L +L R+ ++ D + + +++ DF + Sbjct: 254 SMSQSTTLNYDFSTEEEVRTLFRKLANKLSERM--IEEDKMGTIVSISIRYFDFNTNVRS 311 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P DL A + +DE + +R +G+ V L ++++ + L Sbjct: 312 RKLDHPVYRSEDLFELAMELFDENYEDQPMRHLGIGVGSLSSIHDQKIQMNL 363 >UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaproteobacteria RepID=B9JVH1_AGRVS Length = 428 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 194/350 (55%), Gaps = 20/350 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 + H+D D F+A+VE RDNP L D P+ IGG + RGV+STA Y AR GVRSAMP AL Sbjct: 45 LAHIDCDAFYASVEKRDNPDLIDKPLIIGGGK--RGVVSTACYVARIHGVRSAMPMFKAL 102 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV--TDSVHCHGSATL 121 + CP ++P + Y +R + T ++PLS+DEA+L++ T+++H H L Sbjct: 103 EACPDAVVIPPNMEKYSRVGRQVRAMMEELTPLVQPLSIDEAFLELKGTEALH-HAPPAL 161 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + + I +E+ +T S G++ KFLAK+ASD+ KP G V+ AE FL P+ I Sbjct: 162 VLARLARRIESEIGITVSVGLSYCKFLAKVASDLQKPRGFSVVGEAEALDFLAPRPVTTI 221 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGK A+ LE G+RT G +Q + L++R+G G+ L S+GID+RDV++ K Sbjct: 222 WGVGKAFASTLEKDGIRTIGQLQTMEESDLIRRYGSMGQRLARLSKGIDDRDVHTNDPAK 281 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV--KLKFDDFQQTT 299 SV E T +DI + + +L ++ RL K + +A V KLK DF+ T Sbjct: 282 SVSAETTFFDDISRREDLVPHLRKLSEKVAWRLKKQE----LAGHTVILKLKSADFKLRT 337 Query: 300 QEHVWPRLNKADLIA-----TARKTWDERRGGRGVRLVGLHVT-LLDPQM 343 + RL+ +A T + ++ G RL+G+ ++ DP + Sbjct: 338 RNR---RLDDPTQLADRIFRTGLQMLEKEADGTKFRLIGIGISDFADPSL 384 >UniRef50_Q03R40 Nucleotidyltransferase/DNA polymerase for DNA repair n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03R40_LACBA Length = 371 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 189/370 (51%), Gaps = 34/370 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 RKIIHVDMD F+A++E RD+PA + P+ I + RGV++TANY AR+ GV SAM Sbjct: 9 RKIIHVDMDAFYASIEERDHPAFKQHPLIIAQDPRKTGGRGVVATANYAARQLGVHSAMN 68 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 ALKL P P F Y++ S+ I EIF YT +IEP++ DEAYLDVT++ H S Sbjct: 69 ANEALKLAPQAIFQPPNFPLYRQISDQIHEIFHEYTDKIEPVAFDEAYLDVTENKHHLHS 128 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A EI+ IF + LT S G++ KFLAK ASD KP G VI P + FL LP+ Sbjct: 129 AVQVAHEIQVEIFEKTHLTCSTGISYSKFLAKEASDFRKPVGVSVILPEDAHDFLMALPI 188 Query: 179 AKIPGVGKVSAAKLEAMGLR----TCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 + GVGK + K+ +G TC Q M L F S+ + + Sbjct: 189 ERFRGVGKKTVPKMHELGNSYLEPTCIIGQSWPSFMSLVNLAMF---CISGSEELTSGRL 245 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQG----VKL 290 +R RKS+G ERT + E E ++RL E A V+ R G +KL Sbjct: 246 PYQRERKSIGKERTYGPPLTTLGEVENQLQRL---AEMVAATVQEK---QRHGKTLVLKL 299 Query: 291 KFDDFQQTTQEHVWPRLNKADLIATARKTW-----DERRGGRG----VRLVGLHVTLLDP 341 + F+ T+ R +AD IA +T+ D + G VRL+G+ +T L Sbjct: 300 RTSAFKTLTK-----RYTQADFIANDAQTYYDLALDLYQSVAGENEQVRLLGITITGLAA 354 Query: 342 QMERQLVLGL 351 Q + L L Sbjct: 355 QTFENVRLPL 364 >UniRef50_A2FMN4 ImpB/MucB/SamB family protein n=1 Tax=Trichomonas vaginalis RepID=A2FMN4_TRIVA Length = 519 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 125/353 (35%), Positives = 204/353 (57%), Gaps = 19/353 (5%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +H D+D FFA+VE +P+L+ A+GGS +RG+IST++Y ARK+GVRS M +A+K Sbjct: 92 MHCDLDSFFASVEALLDPSLKGTAFAVGGSV-KRGIISTSSYEARKYGVRSGMAVFVAMK 150 Query: 65 LCPHLTLLP-GRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 LCPHL ++ D Y S ++E+F +Y DEA LD+T ++ + + +A Sbjct: 151 LCPHLNVVHYNHGDKYMNFSKQVQEVFKKYDPEFVSFGCDEATLDITPLLNDNLHSDQLA 210 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPLAKI 181 ++I+Q +F++ +LT S GVA L+KIASD+NKPNG F++ ++ +FL TLP+ KI Sbjct: 211 KQIQQEVFDKTKLTVSIGVAHTPQLSKIASDINKPNGIFIVPKNDDDLKSFLHTLPVRKI 270 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+G V+ L+ +G+ TCGD+ + L KF R ++ + G+ R+ S ++ Sbjct: 271 PGIGGVNEQILKGIGIETCGDILLKKAEIWLTMSHKFCRFVFSAAVGVQPREYESGP-QQ 329 Query: 242 SVGVERTM-AEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD--FQQT 298 S+ +RT+ A D +C I L L R+++K + IA + V +KF D F+ Sbjct: 330 SISKDRTIDATD----DKCTLI--DLVESLARKISKKMKKMRIACRNVAVKFKDINFKVI 383 Query: 299 TQEHV--WPRLNKADLIATARKTWDERRGGRGV--RLVGLHVT-LLDPQMERQ 346 ++ + + +++DL+ + K E R R + RLVG+ T L P ++Q Sbjct: 384 SKSYTFDYDTSDESDLVNASLKLLLEERQERSIKLRLVGVKATNLTSPGDKKQ 436 >UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=DPO4_DEHSB Length = 390 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 179/343 (52%), Gaps = 10/343 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +R+++HVD+D FF +VE P +D P+ +GG ERRGV++ A+Y ARKFG+ S MP Sbjct: 3 IRRVMHVDLDAFFVSVEQAVRPEFKDKPVIVGGKPERRGVVAAASYEARKFGIHSGMPLI 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + G Y+E S I S ++ +EP+ LDEAYL+VT HGS Sbjct: 63 TAKHLCPQAIFIEGNHQLYREYSEKFMLILSDFSPFLEPMGLDEAYLEVTGFESLHGSIA 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A +IR+ I EL + AS G+A K AKIA++ KPNGQ + E +FL L +A Sbjct: 123 QMASKIRRRITAELGINASIGIANSKVAAKIATEQAKPNGQCEVPAGEEASFLAPLDIAV 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PG+GK + L+++G+ T G + L G + L + GID R V Sbjct: 183 MPGIGKKTEQHLKSLGIDTLGKLAALPASFLKSCLGTYAPYLSNAAMGIDNRPVEMPSEA 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT- 299 KS+ E T D + + EA + L ++ L K + + +K++F DF T Sbjct: 243 KSISRETTFETDTRNQTFLEAKLSYLSEKITATLRKRGKQTRVVQ--IKIRFADFTTLTR 300 Query: 300 QEHV-WPRLNKADLIATA----RKTWDERRGGRGVRLVGLHVT 337 Q+H+ P ++ TA D R + VRL+G+ ++ Sbjct: 301 QKHLGQPASGNREIFQTALSLMNGILDSDR--QAVRLLGVGIS 341 >UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=DPO4_METMJ Length = 360 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/351 (35%), Positives = 187/351 (53%), Gaps = 10/351 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 R ++HVDMD FFA++E+R +P+L P+ +G + RGV+ST +Y AR++GV S MP Sbjct: 6 RIVLHVDMDSFFASIEVRRDPSLAGRPVIVGADPKGGAGRGVVSTCSYEARRYGVHSGMP 65 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A LCPH LP Y S I + SR+ RIE +S+DEAYLDV+D+ + Sbjct: 66 ISRAFDLCPHGVYLPVDRPFYASVSVEIMALLSRHAGRIEQVSIDEAYLDVSDA-GSFPA 124 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A I++ + E LT S GVAP K +AKIASD KP+G ++ P EV FL +LP+ Sbjct: 125 AGALAAAIKREVREETGLTCSVGVAPGKAVAKIASDFQKPDGLTIVRPDEVAGFLASLPV 184 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 +IPG+GK + L G+ T GD+ + D+ ++ R G+ G + ++GID+ +V Sbjct: 185 GRIPGIGKKTGEDLRQAGILTVGDLARRDVQEVIARLGRSGVRVHHLARGIDDGEVQGRE 244 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQ 297 KS+ E T D + L ++ L + D L R VK+++ FQ Sbjct: 245 GCKSISRETTFEADTADPPVLAGTLAELADDVAETL---RADNLRCRTVTVKVRYRGFQT 301 Query: 298 TTQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQ 346 T+ PR + + A G VRL+G+ +++L+ RQ Sbjct: 302 HTRSRTLPRFTSDPETIRRAASGLLLPFLNGEPVRLIGVRLSMLEGGCTRQ 352 >UniRef50_UPI000180C22E PREDICTED: similar to polymerase (DNA directed), kappa n=1 Tax=Ciona intestinalis RepID=UPI000180C22E Length = 706 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 116/290 (40%), Positives = 160/290 (55%), Gaps = 49/290 (16%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIH+DMD F+AAVE RD P L+ P+A+GG ++ST+NY ARK+GVR+AMP + Sbjct: 106 RTIIHIDMDAFYAAVEERDRPELKQKPMAVGG----MDMLSTSNYVARKYGVRAAMPGFI 161 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD---------- 111 A KLCP+L ++P FD Y+E S +EIFS Y +SLDEA+LD+TD Sbjct: 162 AKKLCPNLIIVPTNFDKYREVSKETQEIFSEYDENFCGMSLDEAFLDITDHLQKRLIYDQ 221 Query: 112 ---SVHCHG----------------------SATLIAQEIRQTIFNELQLTASAGVAPVK 146 + H H SA +A+EIR I + LTASAG+AP Sbjct: 222 EERTFHYHPTLAPTTTSEDTDDKKSSETFGFSAEEVAKEIRFRIQQKTLLTASAGIAPNT 281 Query: 147 FLAKIASDMNKPNGQFVITPA--EVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV- 203 LAKI SD+NKPNGQ P E+ F++ P+ K+ G+GKV+ L ++G++ CGD+ Sbjct: 282 MLAKIGSDLNKPNGQTFFAPNRDEIMKFIKDFPVRKVNGIGKVTEQLLSSLGVQKCGDIY 341 Query: 204 -QKCDLVMLLK--RFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMA 250 + +L++L F R+ S I E D RKS+ ERT + Sbjct: 342 EMRAELMLLFSATSCSFFFRMCLGCSSNILEPDGE----RKSISTERTFS 387 >UniRef50_D1JEL0 DNA polymerase IV n=1 Tax=uncultured archaeon RepID=D1JEL0_9ARCH Length = 363 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/362 (34%), Positives = 188/362 (51%), Gaps = 21/362 (5%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGG---------SRERRGVISTANYPARKF 51 +R I+HVDMD FF++VE R+ P L+ +P+ +GG + RGV+ST +Y ARK+ Sbjct: 5 VRVILHVDMDSFFSSVEEREKPKLKGLPVIVGGKITPEWEKEDSKIRGVVSTCSYEARKY 64 Query: 52 GVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD 111 G+ SAM A KLCP T LP YK S I I +Y ++E +S+DEA+LDV+ Sbjct: 65 GIHSAMALSKAYKLCPDATFLPVNMPLYKHVSGEIMNILRKYADKMEQVSIDEAFLDVST 124 Query: 112 SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA 171 V A A+ I++ I E LT S G+AP K +AKIASD KP+G V+ E A Sbjct: 125 KVEDWNDAREHAKRIKKAIQVEEGLTCSIGIAPNKTIAKIASDFVKPDGLTVV--EEAKA 182 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDE 231 FL L + IPGVG + L MG+ G + D+ L+ G+ G+ L + GID+ Sbjct: 183 FLAPLDVKNIPGVGPKTDKILRMMGIDQIGQLASGDVQKLVAAIGQSGKRLHLVANGIDK 242 Query: 232 RDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 +V + +RKS+ ERT D S ++ L E+ A + +K+K Sbjct: 243 SEVEEKWVRKSLSRERTFVNDTRDASVLTKCVDALAEEVYN--AMTDAGFVFKTVSIKVK 300 Query: 292 FDDFQQTTQEHVWPRLNKADLIATARKTWDE------RRGGRGVRLVGLHVTLLDPQMER 345 F+DF T+ + DL +T ++T +E + RL+G+ ++ L E+ Sbjct: 301 FEDFTIATRAKTLKTYH-CDL-STLKRTANELMTELNNAKSKKKRLIGVRISNLGAVDEK 358 Query: 346 QL 347 Q+ Sbjct: 359 QM 360 >UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=Veillonella RepID=D1BPW6_VEIPT Length = 500 Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 115/299 (38%), Positives = 166/299 (55%), Gaps = 6/299 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +HVDMD FFA++E D+P + P+ +GG RGV++T +Y ARKFGV SAMP A K Sbjct: 1 MHVDMDAFFASIEQLDHPEYKGHPVIVGG-LSSRGVVATCSYEARKFGVHSAMPILRAKK 59 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQ 124 LCP + R D YKE SN I I +T IEPLS+DEA+L+V+ + + Q Sbjct: 60 LCPDGIYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKALGQ 119 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 I+ +F + L SAG+AP KFLAK+ASD++KP+G VI L LP+ +I GV Sbjct: 120 AIKDRVFEKTGLIISAGLAPNKFLAKLASDLDKPDGLVVIPYGREKEVLAPLPIKRIWGV 179 Query: 185 GKVSAAKLEAMGLRTCGDVQKC-DLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 G + L+A G G +Q D L+ G + +WE + GID+R V ++R +S+ Sbjct: 180 GPRTEKILKAGGFHLIGHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVETDRKIQSI 239 Query: 244 GVERTMAEDIHHWSECEAI-IERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 G E T ED+ +E AI +E Y + L +K+++DDF +++ Sbjct: 240 GAEETYEEDL---TEGRAIELEFRYFANRLSKRLRRRSLYGHTVSIKVRYDDFTTVSRQ 295 >UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria RepID=A3VP13_9PROT Length = 422 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 188/348 (54%), Gaps = 15/348 (4%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I HVD D FFAA+E RD+P+L D P+ +GG RGV+ST Y AR +G+ SAMP A Sbjct: 34 SIAHVDCDAFFAAIEKRDDPSLVDKPVLVGGGH--RGVVSTCCYIARSYGIHSAMPMFKA 91 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS--AT 120 LCP ++P R AY+EA+ IR++ + T I+P+S+DEAYLD+ + HG+ A Sbjct: 92 KALCPQAVIVPPRGAAYREAAAQIRDLMAPLTPLIQPVSIDEAYLDLGGTERLHGAIPAQ 151 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A+ + + + ++ +T S G++ K LAKIASD +KP G +I E FL P Sbjct: 152 LLAK-LAKDVETQIGITLSIGLSVNKLLAKIASDFDKPRGFTLIGGTEAANFLAPYPPGL 210 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PG+G + KL G RT GD+Q C L+ R+G+ G L R+ G D R V +R Sbjct: 211 LPGIGTRFSEKLMRDGFRTLGDLQHCSTRELVDRYGEHGLTLRARACGEDPRPVTVDRET 270 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR-QGVKLKFDDFQQTT 299 KSV E T DI + A+ + LY + ++ K L R +KLK F+ T Sbjct: 271 KSVSGETTFRADI---GDAAALEDHLYAMARKVSSRAKEKGLAGRVVTLKLKTARFRTFT 327 Query: 300 QEHVWPRLNKADLI----ATARKTWDERRGGRGV--RLVGLHVTLLDP 341 + P + + A A T + ++G V RL+G ++ L P Sbjct: 328 RRQTLPHASNLTRVIFDCARAMLTAELQKGRTPVTYRLIGAGISDLVP 375 >UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteria RepID=DPO41_AGRT5 Length = 405 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 19/345 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I H+D D F+A+VE RDNP L D P+ +GG + RGV+STA Y AR GVRSAMP AL Sbjct: 23 IAHIDCDAFYASVEKRDNPELADKPVIVGGGK--RGVVSTACYIARIHGVRSAMPMFKAL 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV--TDSVHCHGSATL 121 + CP ++ + Y IR + T ++PLS+DEA+LD+ T+ +H A + Sbjct: 81 EACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A+ + E+ ++ SAG++ KFLAK+ASD+ KP G V+ AE +FL P+ I Sbjct: 141 LAK-FTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVVGEAEALSFLAARPVTTI 199 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGK AA LEA G+R +Q+ + L++R+G G+ L+ ++GIDER V++ K Sbjct: 200 WGVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNNDPVK 259 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV--KLKFDDFQQTT 299 SV E T DI + I+ L ++ RL K IA Q V K+K DF+ T Sbjct: 260 SVSSETTFFHDISRHEDLVPILRSLSEKVAWRLKKSG----IAGQTVVLKMKTADFKSRT 315 Query: 300 QEHVWPRLNKADLIA-----TARKTWDERRGGRGVRLVGLHVTLL 339 + RL+ +A T ++ G RL+G+ V+ L Sbjct: 316 RNR---RLDDPTQLADRIFRTGLALLEKETDGTKFRLIGIGVSDL 357 >UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella parvula ATCC 17745 RepID=D1YPB9_9FIRM Length = 510 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA++E D+P + P+ +GG RGV++T +Y ARKFGV SAMP Sbjct: 3 RWIMHVDMDAFFASIEQLDHPEYKGHPVIVGG-LSSRGVVATCSYEARKFGVHSAMPISR 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP + R D YKE SN I I +T IEPLS+DEA+L+V+ + Sbjct: 62 AKKLCPDGIYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKA 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + I+ +F + L SAG+AP KFLAK+ASD++KP+G VI L LP+ +I Sbjct: 122 LGRAIKDRVFEQTGLIISAGLAPNKFLAKLASDLDKPDGLVVIPYGRERKVLAPLPIKRI 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKC-DLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG + L+A G +Q D L+ G + +WE + GID+R V ++R Sbjct: 182 WGVGPRTEKILKAGGFHLMRHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVETDRKT 241 Query: 241 KSVGVERTMAEDIHHWSECEAI-IERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 +S+G E T ED+ +E AI +E Y + L +K+++DDF + Sbjct: 242 QSIGAEETYEEDL---TEGRAIELEFRYFANRLSKRLRRRSLYGHTVSIKVRYDDFTTVS 298 Query: 300 QE 301 ++ Sbjct: 299 RQ 300 >UniRef50_B9X9L4 DNA-directed DNA polymerase n=3 Tax=Verrucomicrobia RepID=B9X9L4_9BACT Length = 368 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 173/308 (56%), Gaps = 17/308 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I H+DMD F+A+VE RDNP LR P+ +G +RGV+ A+Y ARKFGVRSAMP+ +A Sbjct: 5 IFHLDMDAFYASVEQRDNPELRGKPLIVGAPPTQRGVVCAASYEARKFGVRSAMPSVVAK 64 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV------TDSVHCHG 117 +LCP + R D Y+ SN I +I + + IE +S+DEAYLD+ +D Sbjct: 65 RLCPDGFFIRPRMDHYRAESNQIMQIVAASGAIIEQVSIDEAYLDLSPVCQRSDLDSSLL 124 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 SA +A +++ IF+E LT S G+A K LAKIASD NKPNG +I + FL+ +P Sbjct: 125 SAVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASDFNKPNGLTLIPERDKVLFLRPMP 184 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKC--DLVMLLKRFGKFGRILWERSQGIDERDVN 235 + IPGVG+V+ L+ G+ T GD+Q DL ++ G FG L S G D R ++ Sbjct: 185 IRAIPGVGRVTEEMLKKSGVETIGDLQDFPGDLRSMV---GSFGPTLKRFSFGEDNRQLD 241 Query: 236 SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQG--VKLKFD 293 + + KS+ E T +D + + E+ +L + + I Q VKL++ Sbjct: 242 TGDVIKSISSENTFLKDTEDRKILKTCLREQAEEIAAKLKRKQ----IGAQTIQVKLRYS 297 Query: 294 DFQQTTQE 301 DF T++ Sbjct: 298 DFTTLTRQ 305 >UniRef50_A4VCZ3 DNA polymerase IV / kappa n=1 Tax=Tetrahymena thermophila SB210 RepID=A4VCZ3_TETTH Length = 950 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 129/207 (62%), Gaps = 12/207 (5%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +H DMD F+ A E++D P L+D+P+A+GG +ISTANY ARKFGVRSAMP +A K Sbjct: 107 VHFDMDMFYVACELKDRPQLKDLPVAVGG----MSMISTANYVARKFGVRSAMPGFIAKK 162 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD-----SVHCHGSA 119 LCP L L+P F+ Y++AS+ +++ +Y +E + LDEA LD+TD +++ Sbjct: 163 LCPQLILIPCNFEKYRKASDQFKKVLYQYDPNLESMGLDEANLDITDYLQQNNINSDAQI 222 Query: 120 TLIAQEIRQTIFNEL-QLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQTL 176 + IR +F LT S G+ P K LAKI SDMNKPNGQF + E + F++ L Sbjct: 223 YDLCHSIRNQVFESTGGLTCSCGIGPNKMLAKICSDMNKPNGQFQLINDEEKIKDFMKDL 282 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDV 203 P+ KIPG+G V+ L+ +G+ C + Sbjct: 283 PIRKIPGIGNVTEQILKGIGIEKCSQI 309 >UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKS4_METHJ Length = 368 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 103/255 (40%), Positives = 146/255 (57%), Gaps = 10/255 (3%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMPTG 60 I+H+DMD F+A+VE+R+NP L P+ IG + RGV+ST +Y AR FG+ SAMP Sbjct: 18 ILHLDMDSFYASVEIRNNPDLSGKPVVIGADPMQGTGRGVVSTCSYEARAFGIHSAMPIS 77 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCPH +P Y + S I +I IE +S+DEAYLD++ C S Sbjct: 78 QAYHLCPHAIFIPPHMATYAQVSATIMQILRGIAGEIEQVSIDEAYLDLS----CDRSYE 133 Query: 121 LIAQE---IRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 L A I+Q I N++ LT S G+AP + AK+AS+ KP+G V++P + +FL+ LP Sbjct: 134 LAAHHAANIKQVIRNQVGLTCSVGLAPSRIYAKMASEQQKPDGLTVVSPDTLESFLKPLP 193 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + KIPG+GK SA L GL+T GD+ +CD+ L FG L + ++G D + Sbjct: 194 VGKIPGIGKKSAQVLINAGLQTIGDIARCDIQTLQDMFGSHAVRLHQIARGQDREGLRES 253 Query: 238 RLRKSVGVERTMAED 252 R+S+ E T D Sbjct: 254 GKRRSISREHTFLRD 268 >UniRef50_B3WC63 DNA-damage-inducible protein P n=8 Tax=Lactobacillus RepID=B3WC63_LACCB Length = 367 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 197/363 (54%), Gaps = 22/363 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-----GVISTANYPARKFGVRSA 56 RKIIH+DMD F+A++EMRDNP LR + I +R+ R GV++TANY AR++GV SA Sbjct: 14 RKIIHLDMDAFYASIEMRDNPQLRSKALVI--ARDPRTTGGKGVVTTANYVARRYGVHSA 71 Query: 57 MPTGMALKLCPH--LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 MP AL+L P L F YK S I +F + T IEP++ DEAYLDVT + Sbjct: 72 MPANEALQLVPRSKLVFKSPDFPKYKAVSAQIHALFHQVTDLIEPVAFDEAYLDVTAN-K 130 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 S +A ++ I QLT+S G++ KF+AK ASD NKP G+ ++ P + FL Sbjct: 131 MFPSTIALALWLQDQISQATQLTSSIGISYNKFIAKQASDYNKPVGRTLVLPEQALLFLD 190 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP+ + GVGK + KL +G+ ++ LL+ FGK G +L++ ++G+D R V Sbjct: 191 RLPIKQFRGVGKKTLPKLTDLGVTDGKSLRALSQDDLLRMFGKMGFVLYQHARGVDNRPV 250 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV-KLKFD 293 + R KS+G ERT + ++ EA+ +L+ + + + + V K++ Sbjct: 251 -AVRTAKSIGKERTYGTPL---TDAEAVQTQLHNLAGMVVTSLNQKAMHGKTVVLKVRDV 306 Query: 294 DF----QQTTQEHVWPRLNKADLIATARKTWDE-RRGGRGVRLVGLHVTLLDPQMERQLV 348 DF ++ TQ+H + + + A + W +RL+G+ VT LDP+ L Sbjct: 307 DFITQTKRLTQDHYFE--GEQAIFDAAWQLWGSVAMSNLAIRLLGITVTGLDPKQYENLD 364 Query: 349 LGL 351 L L Sbjct: 365 LPL 367 >UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2KZY4_9FIRM Length = 418 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 170/302 (56%), Gaps = 10/302 (3%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+A+VEMRDNP L+D P+ IG RGV++T NY ARK+GVRSAM + A Sbjct: 15 ILHVDMDAFYASVEMRDNPTLKDKPLIIGAKPTERGVVATCNYEARKYGVRSAMNSKEAF 74 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP L F+ YK S + EI YT ++E ++LDE YLD+T+ A I Sbjct: 75 RLCPKAVFLYPDFEKYKAVSEELHEILESYTKQVEYIALDEGYLDLTEVAKDFSEAEKIG 134 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE-VPAFLQTLPLAKIP 182 +EI++ + EL+LT S G+A K AK AS+ KPNG F+I E L+ + + Sbjct: 135 REIQRRVAEELRLTCSVGIAYGKTAAKTASEEKKPNGFFMIQRREDYVELLRDRDVRALF 194 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR-- 240 VG +A +L + G+ T D+Q+ + +L+ G G++L E S GID R V R Sbjct: 195 TVGAKTAERLYSFGIYTVKDLQEKE-KEVLRLLGNQGKMLLELSYGIDHRKVVPYRPEDT 253 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK--FDDFQQT 298 +S+ E T ED+ +S + ++ L +E R + L AR GV LK F D + Sbjct: 254 QSISKEMTFQEDVTDYSFLDDVLFLLSFRVENRAKRYG---LYAR-GVSLKITFADMKTI 309 Query: 299 TQ 300 T+ Sbjct: 310 TR 311 >UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomycetales RepID=C7QBJ0_CATAD Length = 834 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 190/363 (52%), Gaps = 34/363 (9%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 + I HVD+D F+A+VE P+LR P+ +GG RGV+STA+Y AR FGV SA+ TG Sbjct: 9 LPSIFHVDLDAFYASVEQLHKPSLRGKPVVVGGIG-NRGVVSTASYEARAFGVHSALATG 67 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT------DSVH 114 +A + P+ L RF AY+ S + + + +EPLSLDEA++D++ D+ Sbjct: 68 IARRRAPNAAYLIPRFGAYQAYSERVMALMHELSPLVEPLSLDEAFIDISHLFGSLDTTT 127 Query: 115 CHGSATL----IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVP 170 H +ATL IA+++R I NE LTAS G K +AKIASD KP+G VI P Sbjct: 128 PH-NATLEARRIAEDLRTRIKNETGLTASVGAGTSKLIAKIASDAEKPDGLVVIEPGTEQ 186 Query: 171 AFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGI 229 +L LP+ + GVG +A +L +G T D++ L L G +G L+ ++G Sbjct: 187 TWLDPLPVRALWGVGPATAERLRKIGATTVADLRTLSLTELTTVVGASYGTTLYAIARGQ 246 Query: 230 DERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQG-- 287 D+RDV+++R KSV VE T AED+ + A ++ L L R+ K R G Sbjct: 247 DDRDVSTDREMKSVSVEDTYAEDLLDPATITAHMDDLVTRLSTRIRKA------GRSGRT 300 Query: 288 --VKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGR---------GVRLVGLHV 336 +K++ DF ++ P N D + T R G G+RL+G+ + Sbjct: 301 ITIKVRGHDFTTVSRSETTP--NPTDDLTTIRAATHRMLPGAVAAATQSVPGIRLLGVGL 358 Query: 337 TLL 339 T L Sbjct: 359 TGL 361 >UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class) RepID=C1A1E2_RHOE4 Length = 432 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 120/358 (33%), Positives = 188/358 (52%), Gaps = 25/358 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H D+D F+A+VE RD+P L P+ +GG GV+ A+Y A+ FGVR+AM G A Sbjct: 38 ILHADLDSFYASVEQRDDPTLAGRPVIVGG-----GVVLAASYEAKAFGVRTAMSGGQAR 92 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 LCP ++P R AY +AS + ++F + +E +S+DEA+L+V G+ I Sbjct: 93 SLCPQAIVVPPRMSAYSQASKDVFDVFHDTSPLVEGISIDEAFLEVGGLAKIVGNPLQIG 152 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 +R+ + ++ L + G+A KFLAK+AS KP+G + P FL LP+ K+ G Sbjct: 153 ANLRRDVAEQVGLPITVGIARTKFLAKVASAFAKPDGLLRVPPEGETEFLHPLPVEKLWG 212 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCD---LVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 VGK++A KL + T GD+ + D +V +L G GR L+ S D R V + R R Sbjct: 213 VGKITAHKLRNFDIVTVGDIARHDESSIVSILG--GGAGRHLYALSHNRDPRPVRAYRGR 270 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQG----VKLKFDDFQ 296 S+G + + H +E +A + L + RR+ + R G ++L+F DF Sbjct: 271 SSMGAQHALGRGSHSRAELDASLMSLVDRVSRRMRSAQ------RTGRTVTLRLRFADFT 324 Query: 297 QTTQEHVWPR--LNKADLIATARKTWDERR---GGRGVRLVGLHVTLLDPQMERQLVL 349 + T+ H R + A+L+ + DE +G+ L+G+ V+ LD QL L Sbjct: 325 RATRSHTLRRSTADTAELLNASMVLLDEAVPMIADKGITLIGVAVSNLDRDGAEQLEL 382 >UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT23_PEDHD Length = 385 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 112/340 (32%), Positives = 182/340 (53%), Gaps = 6/340 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + IIH+D+D FF +VE++ N L P+ +GG +R GV+++ +Y ARK+GV SAMP+ + Sbjct: 5 KHIIHMDLDSFFVSVEIKKNSKLAGKPVIVGGLSDR-GVVTSCSYEARKYGVHSAMPSRL 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH + G D Y E S + EI + +E S+DE Y+D+T +G Sbjct: 64 ARQLCPHAEFVRGNMDDYSEHSRMVTEILQQKVPVLEKASIDEHYIDMTGMERFYGCMKF 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A+E+++ +F E L S G++ K ++KIA++ KPNG + E+P+FL L + KI Sbjct: 124 -ARELKEQVFKESGLPVSFGLSVNKTVSKIATNECKPNGALQVEQLEIPSFLNPLSIKKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+G + KL MG+R + + K G G LW+++ GID V R +K Sbjct: 183 PGLGAATFLKLSEMGVRKIHTFAQIPQQQVYKVLGNNGLSLWQKAHGIDHTPVIPYREQK 242 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ++T D +++ +I + EL L K + L A + +++ +F+ TQ+ Sbjct: 243 SISKQQTFESDSIDFTQIRQLITGMVIELAYELRKQQK--LTACVTIVIRYSNFETITQQ 300 Query: 302 HVWPRLNKADLIATARKTWDERRGGRG--VRLVGLHVTLL 339 P D + K ER R +RLVG+ ++ L Sbjct: 301 CRIPYTALDDTLIVKAKELFERAYTRRMLIRLVGIKLSAL 340 >UniRef50_Q2LU75 DNA polymerase IV n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU75_SYNAS Length = 362 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 190/346 (54%), Gaps = 13/346 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE--RRGVISTANYPARKFGVRSAMPT 59 R+I+H+DMD FFA+VE P L+ P+ IGG + +RGV+STANY ARK+G+ SAMP Sbjct: 14 RRILHIDMDAFFASVEENRKPELKGKPVVIGGMGDPSKRGVVSTANYEARKYGISSAMPL 73 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A KLCP LP + AY S + + + T+ +E + +DEAYLD++++ + Sbjct: 74 RTAYKLCPRAIFLPVDYKAYLAVSRYFKAVLLNITTIMEDVGIDEAYLDISEN---RDTD 130 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 I+++I+ I+ + LT S G+AP K LAKIASDMNKP+G + + ++ L LP+ Sbjct: 131 EKISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDGLTIFSGEDIENRLWPLPIR 190 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238 K+ G+G + L+A+ + T G + +L+ RFG +G L E S+GIDE + + Sbjct: 191 KLYGIGPKTEEHLKALNIATIGQLAALPPEVLVARFGPSYGHYLHEASRGIDESPIITSW 250 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV-KLKFDDFQQ 297 KS E T D +W + L E+ LA+ AR + K+++ DF+ Sbjct: 251 EPKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAEKG---YAARNVILKIRYSDFRT 307 Query: 298 TTQE-HVWPRLNKADLIATARKTWDER--RGGRGVRLVGLHVTLLD 340 T+ + + K + I + +R G+ +RLVG+ V L+ Sbjct: 308 VTRACSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVRVGRLE 353 >UniRef50_Q5Q9H0 Polymerase kappa isoform 9 n=3 Tax=Murinae RepID=Q5Q9H0_MOUSE Length = 467 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/310 (38%), Positives = 174/310 (56%), Gaps = 25/310 (8%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+AAVEMRDNP L+D PIA+G +++T+NY AR+FGVR+AMP +A Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKDKPIAVGSM----SMLATSNYHARRFGVRAAMPGFIAK 157 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP L ++P FD Y+ S ++EI + Y +SLDEAYL++T H Sbjct: 158 RLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQ----HLQERQDW 213 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQTLPLAKI 181 E ++ F ++ G+AP LAK+ SD NKPNGQ+ I P+ V F++ LP+ K+ Sbjct: 214 PEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPIRKV 273 Query: 182 PGVGKVSAAKLEAMGLRTCGDV-QKCDLVMLLKRFGKFGRILWER----SQGIDERDVNS 236 G+GKV+ L A+G+ TC ++ Q+ L+ LL F W + G+ D+ Sbjct: 274 SGIGKVTEKMLMALGIVTCTELYQQRALLSLL-----FSETSWHYFLHIALGLGSTDLAR 328 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDF 295 + RKS+ VERT +E I E ++ + L EL L K + L R +KLK +F Sbjct: 329 DGERKSMSVERTFSE-ISKTEEQYSLCQELCAELAHDLQK---EGLKGRTVTIKLKNVNF 384 Query: 296 QQTTQEHVWP 305 + T+ P Sbjct: 385 EVKTRASTVP 394 >UniRef50_D1HMR5 Whole genome shotgun sequence of line PN40024, scaffold_91.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HMR5_VITVI Length = 704 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/260 (43%), Positives = 154/260 (59%), Gaps = 28/260 (10%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +HVDMD F+AAVE DNP+LR P+A+GG +ISTANY ARKFGVR+AMP +A K Sbjct: 108 LHVDMDAFYAAVETLDNPSLRGRPMAVGG----MSMISTANYEARKFGVRAAMPGFIARK 163 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLIA 123 LCP L +P F Y S+ R++F +Y SLDEAYLD+T+ + ++ IA Sbjct: 164 LCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNERDLTSGEIA 223 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE---VPAFLQTLPLAK 180 +E+R ++ LT SAGVAP + LAK+ SD+NKPNGQFV+ P+ V F+ +LP+ K Sbjct: 224 EELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PSNRMAVMTFISSLPIRK 282 Query: 181 IPGVGKVSAAKLEAM-GLRTCGDVQKCDLVMLLKRFGKFGRILWERSQ---------GID 230 I G+GKV+ L + G+ TC + ML K G F L+ RS G+ Sbjct: 283 IGGIGKVTEHILSGVFGINTCEE-------MLQK--GGFLCALFSRSSADFFLSVGLGLG 333 Query: 231 ERDVNSERLRKSVGVERTMA 250 + D R RKS+ ERT + Sbjct: 334 KTDTPQVRFRKSISNERTFS 353 >UniRef50_Q654Y6 Os06g0691000 protein n=7 Tax=Poaceae RepID=Q654Y6_ORYSJ Length = 1125 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/274 (36%), Positives = 156/274 (56%), Gaps = 5/274 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTGM 61 IIH+DMDCFF +V +R+ P L D P+A+ S +G IS+ANYPAR +G+++ M Sbjct: 379 IIHIDMDCFFVSVVIRNKPELHDKPVAVCHSDNPKGTAEISSANYPARNYGIKAGMFVRE 438 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A CPHL ++P FDAY E ++ I +Y S+++ LS DEA+LD+T+ + H + Sbjct: 439 AKARCPHLMIVPYDFDAYGEVADQFYGILHKYCSKVQALSCDEAFLDMTECL--HDNPEE 496 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + Q+IR IF + +ASAG++ +A++A+ KPNGQ I+ +V +L TL + + Sbjct: 497 VTQKIRNEIFGTTKCSASAGISGNMLIARLATRSAKPNGQCFISSEKVDGYLNTLSIKAL 556 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PG+G + KL++ + CG ++ L K FG K G +LW +GID V + + Sbjct: 557 PGIGHTVSDKLKSKEVEYCGQLRNIPKESLHKDFGKKIGDMLWNYCRGIDHSVVEAVQET 616 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 KSVG E + + E + L E+ RL Sbjct: 617 KSVGAEVNWGVRFNDNKDAENFLVNLSKEVCLRL 650 >UniRef50_B0D0P7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D0P7_LACBS Length = 420 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/317 (37%), Positives = 176/317 (55%), Gaps = 40/317 (12%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA+VE+ NP L P +G RGV++TA+Y ARK+GVRS MP +A Sbjct: 107 IVHVDMDAFFASVELLYNPELAGKPFGVG-----RGVLTTASYEARKYGVRSGMPGFIAK 161 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLI 122 KLCP L L+ F Y E S + +IF RY + P DEAYL++T+ HG +A + Sbjct: 162 KLCPDLILVSNNFSRYSEMSAKVMDIFRRYDPNMCPAGSDEAYLNITEYSVRHGLTAEVC 221 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPLAK 180 QE+R+ + QLT SAG+AP K NKPNGQF I A + AF+ L + K Sbjct: 222 VQEMRKAVHAITQLTVSAGIAPNK---------NKPNGQFQIPFDSASIKAFMHHLSIRK 272 Query: 181 IPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE- 237 +PG+G+V+ LE++G++TCGD+ + + ++ KRFG + L + GI V Sbjct: 273 VPGIGRVNERLLESIGIKTCGDIYMHRVVISVMDKRFGL--KFLLQTHLGIASNIVEPHL 330 Query: 238 -RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQG-------VK 289 RKS+G ERT + + E I+++ L+ A+++ D+ +R G +K Sbjct: 331 REERKSIGAERTFSS----LGDKEKILQK----LQEIAAELEKDM--SRNGWTGRTVTLK 380 Query: 290 LKFDDFQQTTQEHVWPR 306 K D +Q T+ + R Sbjct: 381 YKLDTYQVFTRAKTFDR 397 >UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GJQ9_KOCRD Length = 412 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 176/335 (52%), Gaps = 7/335 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+ VE+ D P R P+ + GS R V+ +A+Y AR+FGV SAMP A Sbjct: 17 ILHVDMDMFYVGVELLDAPQHRGRPVIVAGSGPR-SVVLSASYEARRFGVHSAMPVSQAR 75 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 CP LL +AY S + +IF T R+E LS+DEA++DV+ ++ G IA Sbjct: 76 ARCPSAVLLEPHREAYAHYSRIVMDIFRSVTDRVEQLSVDEAFVDVSGAIRRCGPPVEIA 135 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + +R+TI LTAS GVA K +AKIAS KP+G V+ P AFL LP+ ++ G Sbjct: 136 RGLRRTIQQRTGLTASVGVAENKTVAKIASAHCKPDGLLVVAPEHTRAFLARLPVDRLWG 195 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKS 242 VG+ ++ L A GL T GD+ L L G G L + + G D R V R KS Sbjct: 196 VGRRTSETLRAAGLATVGDIAGTPLPRLHALVGVASGSHLQQLALGHDPRPVTPTREEKS 255 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G ERT D+ +E + ++ L E RL + L R G+KL++ DF ++ Sbjct: 256 LGAERTFQTDLSETAELKRVLLGLCHETAARLR--RHGLRAGRVGLKLRYADFTTISRSR 313 Query: 303 VW--PRLNKADLIATARKTWDE-RRGGRGVRLVGL 334 P + DL A D R + VRLVG+ Sbjct: 314 TLGHPVTSAHDLYTEAAGLLDALGRRPQAVRLVGI 348 >UniRef50_B9HS71 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS71_POPTR Length = 1191 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 101/274 (36%), Positives = 154/274 (56%), Gaps = 5/274 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTGM 61 IIHVDMDCFF +V +R++P L D P+A+ S +G IS+ANYPAR +GV++ + Sbjct: 441 IIHVDMDCFFVSVVIRNHPELHDKPVAVCHSDNPKGTAEISSANYPARNYGVKAGIFVRD 500 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCP L + P F AY+E ++ + I ++ +++ +S DEA+LD+T+ G L Sbjct: 501 AKALCPQLVIFPYNFKAYEEVADQLYNILHKHCHKVQAISCDEAFLDITEKDM--GDPEL 558 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A IR+ IF+ TASAG+A +A++A+ KPNGQ I V +L LP+ + Sbjct: 559 LASTIRKEIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCYIPSVSVDEYLHKLPIKAL 618 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PG+G V KL+ + TCG ++ L K FG K G +LW S+G+D R V + + Sbjct: 619 PGIGHVLEEKLKKQNVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRLVGNIQES 678 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 K++G E + + + L E+ RL Sbjct: 679 KTIGAEVNWGVRFKDLQDSQCFLLNLCKEVSFRL 712 >UniRef50_Q5K8U2 Putative uncharacterized protein n=3 Tax=Agaricomycotina RepID=Q5K8U2_CRYNE Length = 658 Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 113/279 (40%), Positives = 165/279 (59%), Gaps = 17/279 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 IIHVDMD F+A+VE++ +P+L+ +G +GV+ TA+Y ARKFGVRSAM +A Sbjct: 221 IIHVDMDAFYASVEVQRDPSLKGKAFGVG-----KGVLCTASYEARKFGVRSAMAGFIAK 275 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLI 122 KLCPH+ L FD Y +AS ++E+ +Y + SLDE YL++T + H +A+ + Sbjct: 276 KLCPHIILTDLHFDLYTKASKAVKEVLVQYDENLMMASLDEGYLNITPYMSTHNMTASEV 335 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT--PAEVPAFLQTLPLAK 180 EIR + + LT SAG+A + LAKI SD NKPNG F + A + F++ LP+ Sbjct: 336 VTEIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGHFELAFDRATIVRFMRDLPVRN 395 Query: 181 IPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 IPG G+V+ LE +G++TCGD+ ++ DL+++ FG G L GI + V R Sbjct: 396 IPGFGRVTERCLEGLGIQTCGDIYEKRVDLLLMDHWFGFRG--LCRAYLGIADNTVAPGR 453 Query: 239 L--RKSVGVERTM---AEDIHHWSECEAIIERLYPELER 272 R+SVGVERT +D + I+E L +L+R Sbjct: 454 REERRSVGVERTFRDKTDDEDIMATLIDIVEELGKDLDR 492 >UniRef50_D2VFM3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VFM3_NAEGR Length = 888 Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 100/274 (36%), Positives = 158/274 (57%), Gaps = 3/274 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++H+DMDCFFA++ MRDNP+L++ PIA+ S + G IS+ANY AR FGVR+ M A Sbjct: 271 VVHIDMDCFFASIAMRDNPSLKNKPIAVSYSTDGTGDISSANYCARDFGVRAGMWMKQAR 330 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL-- 121 +LCP L ++P F+ Y EA++ I EI + + R++ +S+DEA++++T+ + + L Sbjct: 331 ELCPDLIVVPYEFEKYNEAASKIDEILNSHCERVKIISIDEAFIEITNELKNNTVEELNE 390 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + +IR I E + TASAG++ + LA+IA+ KPNGQF + E +F++ L + +I Sbjct: 391 LVSKIRNEIERETKCTASAGMSTNQLLARIATKKAKPNGQFYLDAKEAVSFIENLNIEEI 450 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 P VG + M + C + L + G K G L+ +GID+R + R Sbjct: 451 PSVGWKTKKFFNQMSITKCSQLLSYSKTELKELVGEKKGETLYNFLRGIDKRPFFDDTGR 510 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 KSVGVE ++ I++L E+ RL Sbjct: 511 KSVGVEVNYGIRFTKMAQVSEFIDKLSIEVTSRL 544 >UniRef50_A5EBX2 DNA polymerase IV (Pol IV 3) n=2 Tax=Bradyrhizobiaceae RepID=A5EBX2_BRASB Length = 330 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 161/301 (53%), Gaps = 52/301 (17%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE RDNP LR P+A+GGS+ER GV++ A+Y AR FGVRSAM Sbjct: 26 RKIIHIDMDAFYASVEQRDNPGLRGKPVAVGGSKER-GVVAAASYEARAFGVRSAM---- 80 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 R + ++ + P++ D Sbjct: 81 -------------------------RSVTAKRNMQDIPVATD------------------ 97 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA IR I E LTASAG++ KFLAK+ASD KPNGQFVITP PAF++ LP+ K Sbjct: 98 IATAIRAKILRETGLTASAGISYNKFLAKLASDHRKPNGQFVITPKMGPAFVEQLPVGKF 157 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + AK+ +G+ T D++ + FGK G + S+G+DER V + R+RK Sbjct: 158 HGIGPATNAKMNRLGIFTGMDMRNQTRGFMNAHFGKAGAYYYWVSRGVDERPVRANRIRK 217 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQ 300 SVG E T + D+ ++ A++ L P +++ + R +K+KF DFQ T+ Sbjct: 218 SVGAENTFSGDLTGFA---ALVAELEPLIDKVWGHCESTGNFGRTVTLKVKFSDFQIITR 274 Query: 301 E 301 Sbjct: 275 S 275 >UniRef50_UPI0001982DE6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001982DE6 Length = 1137 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 146/246 (59%), Gaps = 5/246 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTGM 61 IIH+DMDCFF +V +R+NP L+D P+A+ S +G IS+ANYPAR +GV++ + Sbjct: 397 IIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVRD 456 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCPHL + P F+AY+E ++ I ++ ++++ +S DEA+L+V DS G L Sbjct: 457 AKALCPHLVIFPYNFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEVMDSK--EGDPEL 514 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A IR+ IF TASAG+A +A++A+ KPNGQ I +V +L LP+ + Sbjct: 515 LASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKAL 574 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PG+G V KL + TCG ++ L + FG K G +LW +G+D R V + Sbjct: 575 PGIGHVLEEKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQES 634 Query: 241 KSVGVE 246 KS+G E Sbjct: 635 KSIGAE 640 >UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Coriobacteriaceae RepID=C7MN57_CRYCD Length = 454 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 12/345 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+ +D+D FFA+VE D+PA R P+ +GG+ E RGV+STA+Y AR +GV SAMP+ Sbjct: 27 RAIMLLDLDAFFASVEQLDHPAWRGKPVIVGGNPEARGVVSTASYEARTYGVHSAMPSST 86 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP+ PGRF Y+E S + I + +E +S+DEA+LD+T S Sbjct: 87 AKRLCPNAFWTPGRFSRYREISRQVMSIMEDESPALEQVSIDEAFLDITPSRAQTEHPAA 146 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I+Q + EL +T S G+ K +AK AS+ +KP G ++ P FL LP + Sbjct: 147 IAQRIQQRVC-ELGITCSIGLGRSKAVAKTASEAHKPRGLTIVPPGYEETFLAGLPTKAM 205 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + L G+ T G V + D V+L FGK ++ +R +G D+ V K Sbjct: 206 SGIGPAAQQALRKFGITTLGQVAQADDVILNHVFGKNASLMRDRCRGCDDSPVMHPAGAK 265 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ-QTTQ 300 SV E + A D+ + EA + + ++ RR+ L+ + +KL+ DF + Q Sbjct: 266 SVSNEMSFAVDLTSREDIEAALSTVAAKVGRRMRMNG--LVGSTLSLKLRRGDFSIHSAQ 323 Query: 301 EHVWPRLNKADLIATA-----RKTWDERRGGRGVRLVGLHVTLLD 340 H+ + +I + W R G VRLVG +T ++ Sbjct: 324 CHLDIPCDDEYVITPILFDLLDRVW---RPGDSVRLVGCALTHIE 365 >UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWI6_HALOH Length = 385 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 113/277 (40%), Positives = 163/277 (58%), Gaps = 7/277 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGG-SRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD FFA+VE DNP R P+ +GG E RGV+STA+Y ARK+GV+SAM A Sbjct: 5 IMHVDMDAFFASVEQLDNPEFRRKPVIVGGIDLENRGVVSTASYEARKYGVKSAMSVVEA 64 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP + GR Y+E S I IF+ YT +E +S+DEA+LD+T GS+ I Sbjct: 65 RRLCPEGIFVKGRHSRYREISEKIFRIFNTYTPLVEKVSIDEAFLDLTGCHRLFGSSVEI 124 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 ++I+ I +L LTAS G++ KFLAK+AS M+KP+G F+I V L L + ++ Sbjct: 125 GKKIKNKIKEQLGLTASIGLSYNKFLAKLASGMDKPDGFFIIDDNNVDKILNKLCVGEVW 184 Query: 183 GVGKVSAAKLEAMGLRTCG---DVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 G+GK + L + G++T G + K DL +L GK G L+ ++GID+R V Sbjct: 185 GIGKKTEQLLLSKGIKTVGMLRHLSKSDLKGIL---GKQGLQLYYLARGIDDRHVEPGSD 241 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAK 276 KS+ E T ++D+ E + + + + RRL K Sbjct: 242 IKSISHEETFSDDLIDPDEVMSHLMNMSERVARRLRK 278 >UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus RepID=C7RGQ0_ANAPD Length = 345 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/352 (32%), Positives = 192/352 (54%), Gaps = 16/352 (4%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M I HVD D F+A+ E NP +++ P+A+GG + +++TANY AR+FG+ SAMP Sbjct: 1 MNYIFHVDCDAFYASCEELRNPKMKNHPLAVGG-LSNKSILTTANYKAREFGLHSAMPVF 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV-TDSVHCHGSA 119 +A +LCP+L LLP Y++ S + + Y +E +S+DEAYL V TDS Sbjct: 60 IAKELCPNLILLPVDHKYYRKKSKEVFSLVKEYAKLMEQVSVDEAYLLVETDS------P 113 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 +A+++++ + + + S G++ KFLAK+ASD KP+G I ++ FL + + Sbjct: 114 KKLARKLQEEVLRKTGIGISIGISYNKFLAKLASDWQKPHGITQIRKEDLDYFLPNISVN 173 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 K+ G+GK ++ +L +G+ D+ K D L+ FGK G ++ +G+D+R +N R+ Sbjct: 174 KVHGIGKKTSERLNKIGIYKVEDLLKLDYEYLIDNFGKQGAYIYHVIRGVDDRKINPSRV 233 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD--FQQ 297 RKS+G ERT A++ + + + ++ L +E + +K I + V LK D F+ Sbjct: 234 RKSIGKERTFAQNTNDMAILTSYLKNLSELIEDEM-DIKN---IQGKTVNLKIKDAKFKN 289 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 T+ P D+ A ++ G +RL+G+ ++ L + QL Sbjct: 290 HTRSITLQEPIYRAKDIYNEALSLLEDLHKGEMLRLIGISLSNLQERKLNQL 341 >UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=C4G590_ABIDE Length = 447 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 100/277 (36%), Positives = 158/277 (57%), Gaps = 4/277 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D +CF+A+VE+ +P LR P+A+GG+ E R G++ TA+Y A+++GV++ M Sbjct: 21 RTILHSDCNCFYASVELLHHPELRGKPVAVGGNPEARHGIVLTADYTAKRYGVKTGMALW 80 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A ++CP + LP R D Y S +EI+S YT +IEP +DE++LDV++S G Sbjct: 81 QAKQVCPDIIFLPPRMDLYLRFSRMAQEIYSEYTDKIEPFGIDESWLDVSESAGIKGDGY 140 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EI + + EL +T S GV+ K AK+ SD KP+ + E A LP+A Sbjct: 141 AIAKEISERMKKELGITVSIGVSFNKIFAKLGSDYKKPDAITTMGKDEYKAKAWPLPVAN 200 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VG+ ++ K MG++T GD+ D +L+K+ GK G +L + G D+ V N+ Sbjct: 201 LLYVGRATSRKFADMGIKTIGDLATMDEGILIKKLGKIGSVLHAFANGYDDSPVKLENTS 260 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 KSVG T +D+ + + ++ L + RL Sbjct: 261 APVKSVGNSTTTPKDMKTDEDVKIVLYILAESVAARL 297 >UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_TREDE Length = 395 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 122/353 (34%), Positives = 190/353 (53%), Gaps = 15/353 (4%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 HVD+D FFA+VE DNP P+ +GG ER GV+ST +Y ARKFGV SAMP A Sbjct: 7 FFHVDIDAFFASVEQLDNPEYMGKPVIVGGQSER-GVVSTCSYEARKFGVHSAMPILQAR 65 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP L GR D Y E S + IF +T I+ +S+DEA+L++T G+ A Sbjct: 66 KLCPSGIFLRGRMDRYHEKSKEVMSIFKDFTPEIKQISVDEAFLNMTGMEKIFGTPKNSA 125 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 +++TI E LT S G A K++AKIAS +KP+G F++ E F+++LPL + G Sbjct: 126 LLLKKTIKEETGLTVSVGCAQNKYIAKIASGRSKPDGLFIVKAGEEIDFMKSLPLKDVWG 185 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRK- 241 VG + +L A GL + + +L G G L++ +G + DV S+ ++ Sbjct: 186 VGGKTRERLIAAGLTSVPQIFNSSEHLLQSILGNASGSFLFQAVRG-ELYDVFSDDVKSH 244 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRL--AKVKPDLLIARQGVKLKFDDFQQTT 299 S+ ERT D+ +E + ++ L EL R+ KVK + VK++++DF + Sbjct: 245 SISTERTFEHDLFSHAEIDDVMFYLASELMYRIFDEKVKGKTV----SVKIRYNDFTTVS 300 Query: 300 QEHVWPRLNKA-DLIATARKTWDERRGGRG-VRLVGLHVTLLD---PQMERQL 347 + +N DL AR+ + ++ + +RL+GL + ++ P+ + +L Sbjct: 301 VQSTGAVVNDTQDLFERARELFYKKFDNKTPIRLLGLCIMNIESDIPEAQTEL 353 >UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria RepID=B9M459_GEOSF Length = 420 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/352 (33%), Positives = 190/352 (53%), Gaps = 13/352 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDM+ FFA+VE +++P LR P+A+ GS +R +++T +Y AR FGV++ M Sbjct: 13 RIIMHVDMNAFFASVEQQNDPRLRGKPVAVVGS-SKRTIVTTCSYEARAFGVKTGMALWE 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A CP+L L+ G+ Y S+ I ++ +T +E S+DEA+LD++ S+ G+ Sbjct: 72 AKSCCPNLILVVGKNREYTRISSLIMKLMYDFTPLVETFSIDEAFLDISGSLSLFGTPEN 131 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA ++ I ++ LT S G+AP K LAK+ASDM KP+G VI PAEV + P+ + Sbjct: 132 IASLLKARIGDQFGLTCSIGIAPNKLLAKLASDMQKPDGLTVIKPAEVALTMDRTPIRDM 191 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSER 238 G+GK + L +G+RTCGD+ + + +L ++FG G L G+D+ V Sbjct: 192 CGIGKKTEKSLTMLGIRTCGDLGRFPVKLLRQKFGIVGEALHLMGLGVDDSPVVPQEESD 251 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF---DDF 295 L KSVG T+ +D+ + + +L + RR+ + +A + V L D F Sbjct: 252 LVKSVGHSMTLEKDLEKREDILRYLLQLAEMVGRRMRRYG----VAGKTVCLSVRYADFF 307 Query: 296 QQTTQEHVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER 345 +++ P A++ A D + VRL+G+ ++ L Q E+ Sbjct: 308 TNFSRQLTLPEYTNLSAEIYRGAVTLLDSVELTQPVRLLGVKLSNLRHQDEQ 359 >UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Rothia mucilaginosa RepID=D2NU69_9MICC Length = 479 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 166/301 (55%), Gaps = 7/301 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FF VE+ +NPALR PI + R V+ +A+Y AR GVRS MP Sbjct: 26 RVIMHLDMDAFFVNVELLENPALRGEPIIVA-PLGPRSVVCSASYEARAHGVRSGMPLSR 84 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A L P+ T+LP R D Y+ S + I + + +E +S+DEA++D+T + + HG + Sbjct: 85 ARNLSPNATVLPLRGD-YRHYSRAVMAILNDLSPYVEQVSVDEAFVDLTGA-YLHGQDPV 142 Query: 122 -IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +AQ R I EL L +SAGVAP K LAK+AS +KPNG +VI P V FL ++ Sbjct: 143 ALAQSARDRIAQELSLPSSAGVAPNKLLAKMASTGSKPNGLWVIPPERVQEFLDPRKVSN 202 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERL 239 + GVG S +L G+ T ++ L L +RFG G LW ++GIDER V +ER Sbjct: 203 LWGVGVKSTEQLSRYGIHTIAQMRSMSLDWLKERFGTAQGEHLWAMARGIDERPVVTERE 262 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 KS+G E T D E A I L +L +RL L +K+++ F+ T Sbjct: 263 EKSMGGEHTFETDTTDAQEVSAAIRELSLKLGKRLRAAGK--LAGGLSLKIRYSTFETHT 320 Query: 300 Q 300 + Sbjct: 321 R 321 >UniRef50_D0MYB5 DNA polymerase kappa, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYB5_PHYIN Length = 601 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 115/283 (40%), Positives = 156/283 (55%), Gaps = 43/283 (15%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+ VDMD F+AAVEMRD+P LRD+P+A+GG G+IST NY AR+FGVR+AMP + Sbjct: 84 RTIVVVDMDMFYAAVEMRDDPKLRDVPLAVGG----LGMISTTNYAARQFGVRAAMPGFI 139 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH----- 116 +LCP L +P Y + IR +F+ Y E SLDEA LD+TD + + Sbjct: 140 GKELCPDLHFVPVNMKKYAGVAAEIRAVFAEYDPDFEAFSLDEACLDLTDYIAENWQKYI 199 Query: 117 -------------------------GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKI 151 A ++ +E+R+ +F+ QLTASAG+A LAKI Sbjct: 200 SDAMDEIESKESDKEEWASTASGRAAIAAVVVRELRKKVFDCTQLTASAGIAVNSMLAKI 259 Query: 152 ASDMNKPNGQFVI--TPAEVPAFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGDV--QKC 206 SDMNKPNGQ+V+ + V F++ LP+ KI G+GKV L EA+ ++T GD+ Q+ Sbjct: 260 CSDMNKPNGQYVLPFSRERVMTFIRELPVRKIGGIGKVMEKTLNEALDVQTGGDLFDQRG 319 Query: 207 DLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTM 249 + L GK L + S G+ ER E RKS ERT Sbjct: 320 KIAHLFS--GKTAMWLLQTSLGVQERREKQE--RKSFSRERTF 358 >UniRef50_C7DHN7 DNA-directed DNA polymerase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHN7_9EURY Length = 350 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 167/304 (54%), Gaps = 7/304 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAM 57 M +I++DMD FFAA E + +P L+ P+A+G S RGV+ T NY ARK+G+RS M Sbjct: 1 MGLVIYIDMDYFFAACEEKRHPELKGRPLAVGTSDSADKLRGVVQTCNYEARKYGIRSGM 60 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 PT A +L L + Y+E SN I E S +E +S+DEA +DV D +G Sbjct: 61 PTLKAFQLYKDLQYVKADDAYYEEVSNAIMEYLSSLGFPLEKMSIDEAAIDVGD--LGYG 118 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 A +A+ I++ I L L + G++ K AK+A D KP+G + + FL++ Sbjct: 119 KANELAERIKEEIKQRLGLPCTIGISIGKVFAKMACDKAKPDGLLTLDEVHLHEFLKSTD 178 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + K+PGVG S KL AMG+++ D++ D + L+ FG FGR L+ + GIDE V SE Sbjct: 179 VKKLPGVGSKSYEKLSAMGVKSIADIRNIDPLRLVDEFGSFGRELYALAGGIDESKVVSE 238 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 S+ ERT+ E ++++E L E+ L K K + GVK+++ DF + Sbjct: 239 ERVLSISRERTLRGLEDQQKEIDSMLEVLSKEVIAELNKRKMEF--GGVGVKVRYVDFSE 296 Query: 298 TTQE 301 ++ Sbjct: 297 KVRD 300 >UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E013_METI4 Length = 365 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 168/298 (56%), Gaps = 11/298 (3%) Query: 7 VDMDCFFAAVEMRDNPALRDIPIAI-GGSRERRGVISTANYPARKFGVRSAMPTGMALKL 65 VD+D F+ +VE +P R++P+A+ GS RGVI TA+Y ARK+GV+S MP AL Sbjct: 30 VDLDAFYVSVERLRHPEYREMPMAVYTGSLNGRGVIMTASYEARKYGVKSGMPIRQALYH 89 Query: 66 CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQE 125 CP + L+ Y+E SN + + R++ RIE +S+DE L V S+ +AT Sbjct: 90 CPGIMLVAAHPSLYEEYSNSVYSLLKRFSERIERVSIDENCLVVPSSIDPETTAT----A 145 Query: 126 IRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVG 185 I+ I ++ L +S GV K +AK+A D+ KP G VI P AFL LP+ KIPGVG Sbjct: 146 IQAAIGAKIGLPSSIGVGSNKLIAKMACDLAKPQGIRVIPPGYEKAFLAPLPVEKIPGVG 205 Query: 186 KVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGV 245 + AMG+ T D+ K D L ++FGK G + +QGID+ + ER +S+ Sbjct: 206 PATLKIFHAMGIVTIDDLSKVDEQTLREKFGKRGAYFYNAAQGIDKSPLQLERTPRSLSR 265 Query: 246 ERTMAEDIHHWSECEAIIERLYPELERRLA-KVKPDLLIARQ-GVKLKFDDFQQTTQE 301 E T DI ++S I++R+ L R LA ++ + L+A+ +KL++ DF ++ Sbjct: 266 EITFDRDIKNFS----ILQRVLVSLSRDLADSLRKEKLVAKTVFLKLRYSDFSTNLRQ 319 >UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBK8_9FIRM Length = 389 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/336 (32%), Positives = 182/336 (54%), Gaps = 6/336 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D++ FFA+ E+ N AL P+ + G RR V+STA+Y AR +GV SAMP M Sbjct: 4 RVIFHIDLNSFFASAEVLKNSALEGQPVVVAG-MHRRSVVSTASYEARNYGVHSAMPLHM 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP L ++ G + Y+E S R++ +EP S+DE Y+DVT+++ + Sbjct: 63 ALEKCPQLVVVQGDYAWYEELSRRFFNYVKRFSPYLEPASIDECYIDVTEAIRAYKRPLD 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A I++ ++ +L+L S GV P KFLAK+ASDM KP G V+ E+ L L +A + Sbjct: 123 LAWRIQKGVYEDLRLPCSIGVGPSKFLAKMASDMRKPMGITVLRRQEIERKLWPLSIADM 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQK-CDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+GK + LE G+ T GD + ++ GK L + ++G ++ Sbjct: 183 FGIGKKTVPLLERQGIYTIGDFANPANEAKIMALMGKHAYQLIQNARGFGSNRLDYNTSV 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 +S+ T+ +I + E +++ +RL +L +R AK + DL A + +++ DF + Sbjct: 243 QSISQSTTLDTNIVEYEEVKSVFKRLANKLSQR-AK-QEDLRGALISISIRYADFTNAVR 300 Query: 301 E-HVWPRLNKAD-LIATARKTWDERRGGRGVRLVGL 334 + N AD L+ A +D+ G+ +R +G+ Sbjct: 301 STTISEYTNDADVLLEHALLLFDQHNNGKEIRHLGI 336 >UniRef50_B7P2Q3 DNA polymerase IV / kappa, putative n=1 Tax=Ixodes scapularis RepID=B7P2Q3_IXOSC Length = 487 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/280 (40%), Positives = 164/280 (58%), Gaps = 19/280 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++HVDMD +FAAVEMRD+P+L+D P+A + ST+NY ARKFGVR+AMP + Sbjct: 86 RIVVHVDMDAYFAAVEMRDDPSLKDKPMAQA---PFSFLASTSNYEARKFGVRAAMPGFI 142 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HGSAT 120 KLCP L ++ F+ Y S +R++ +RY P+ LDEAYLD+TD V+ Sbjct: 143 GKKLCPSLLIVRPNFNKYSSVSAEVRKVMARYDEDFMPVGLDEAYLDITDHVNATDADPE 202 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA---FLQTLP 177 I +E+R+ IF QLTA +AP FLAK+ SD+ KPN QF + P ++ A F+++LP Sbjct: 203 DIVREMRKKIFEATQLTAR--IAPNMFLAKVCSDIRKPNNQFRL-PNDINAVREFVRSLP 259 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGD--VQKCDLVMLLKRFGKFGRILWERSQ-GIDERDV 234 + K+PG+G V L A+G +TC D V++ + L FG + R+ G+ +V Sbjct: 260 IRKVPGIGAVQEQLLRALGAQTCHDLWVKRAAIGHL---FGMTSARFYLRAALGLGCTEV 316 Query: 235 NSERLRKSVGVERTMAEDIHH---WSECEAIIERLYPELE 271 + KS VE T +E S+CE + E+L ++E Sbjct: 317 KCDSACKSKSVEETFSELSSPEALVSKCEELCEQLCEQVE 356 >UniRef50_A0D236 Chromosome undetermined scaffold_35, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0D236_PARTE Length = 591 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 150/265 (56%), Gaps = 17/265 (6%) Query: 6 HVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKL 65 H DMD F+ A E+ D P L+D P+A+G + ++STANY ARKFGVRSAMP +A KL Sbjct: 90 HFDMDMFYVACELLDKPELKDKPVAVG-----QTIVSTANYVARKFGVRSAMPGFVAKKL 144 Query: 66 CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQ 124 CP + +P F+ YK SN I +Y +E + LDEA LD+T+ + + ++ + Sbjct: 145 CPEIIFIPCHFEKYKSVSNIFMTILKKYDDNLESMGLDEANLDLTEYINNSQEDPAILCE 204 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPLAKIP 182 IR+ I QLTAS GV P K +AK+AS++NKPNG V+ + V FL+ LP+ KIP Sbjct: 205 NIRKDILLATQLTASCGVGPNKMIAKLASEINKPNGLHVVEQSATAVLNFLEKLPIRKIP 264 Query: 183 GVGKVSAAKLEAMGLRTCGDVQ-KCDLVMLLKRFGKFGRILWE-----RSQGI---DERD 233 G+G ++ L + TC DV+ + D + ++ F I + R+ + D+ Sbjct: 265 GIGNITEQILSGLNFNTCKDVRDRADELYVIFTPKTFEYIFYSCWGVARNYHVEFEDQHS 324 Query: 234 VNSERLRKSVGVERTMAEDIHHWSE 258 ++ +R S+ +R + + + +E Sbjct: 325 ISCQRTFSSISTQREFEDKVDYIAE 349 >UniRef50_A9BNM1 DNA-directed DNA polymerase n=34 Tax=Betaproteobacteria RepID=A9BNM1_DELAS Length = 437 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 197/400 (49%), Gaps = 57/400 (14%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER------------------------ 37 R+I H+DMD F+A+VE+ P L+ +P+ IGG R Sbjct: 28 RRIAHLDMDAFYASVELLRYPQLKGLPVVIGGGRRAHDEALDARYAGRLHEIPVDEFSRL 87 Query: 38 -----RGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSR 92 RGVI+TA YPAR+FGV SAM A +LCP LLP F + S +EI Sbjct: 88 KDYVGRGVITTATYPARQFGVGSAMGMMKAARLCPQAILLPVDFAEVRRFSRMFKEIIVS 147 Query: 93 YTSRIEPLSLDEAYLDVTDSVHCH-GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKI 151 +E +DE Y+D TD ++A+ I++TI + LT S GVAP K LAK+ Sbjct: 148 IAPLMEDRGVDEVYIDFTDVPGGQREGGRVLARLIQKTITDATGLTCSIGVAPNKLLAKM 207 Query: 152 ASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVML 211 AS+ NKPNG ++ P ++ A + L KI G+G + AKL+++G++T G++ K L L Sbjct: 208 ASEFNKPNGISIVQPDDLQAVIWPLACRKINGIGPKADAKLQSLGIQTIGELAKQSLPQL 267 Query: 212 LKRFGK-FGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIH---HWSECEAII---- 263 ++ FG+ +G L S G DER V + S+ E T D+H +E AI Sbjct: 268 VQWFGRAYGNWLHGVSWGRDERPVVTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLC 327 Query: 264 ERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV--WPRLNKADLIATARKTWD 321 ERL +L+R+ + G+KL++DDF+ T++H P + A L A + Sbjct: 328 ERLAQDLQRK------GYMGRTVGIKLRYDDFKTATRDHTLELPMADAATLRRAAGQCLK 381 Query: 322 ERRGGRGVRLVGLHV-----------TLLDPQMERQLVLG 350 + +RL+G+ V T DP QL+ G Sbjct: 382 RVPLAKRLRLLGVRVGNLVRTADWEATAHDPLAREQLLRG 421 >UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDP3_9FIRM Length = 395 Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 104/277 (37%), Positives = 153/277 (55%), Gaps = 3/277 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPT 59 MR+IIHVDM+ FFA+ NP + P+ + G ++R G+I TA+Y ARKFGV++AM Sbjct: 1 MRQIIHVDMNAFFASCHQAQNPQWQGKPLLVAGDPQKRHGIILTASYEARKFGVKTAMAV 60 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A KLCP + Y S I I YT +EP S+DEA+LDVT S G+ Sbjct: 61 WQAKKLCPQGIYISPDHKLYSAYSKRIMAIMEDYTPLVEPFSIDEAWLDVTGSARLFGTT 120 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 I + ++Q I +E + S G++ KFLAK+AS+ KP G ++ P +VP L LP+ Sbjct: 121 EEIGRLLQQRILDETGIPCSVGISGNKFLAKMASERQKPQGFTILWPRDVPEVLWPLPVE 180 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 ++ GVG+ A L MG+ T G++ L +L+ RFG G L + G D+ V+ Sbjct: 181 EMVGVGRKMAPALHEMGIETIGELAAMPLRLLVSRFGVAGESLHHLANGRDDSPVDPTVF 240 Query: 240 R--KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 KSVG T+ DI+ + ++ +L ++ RRL Sbjct: 241 DTVKSVGNSLTLPRDINDPEDVARVLLKLSEKVGRRL 277 >UniRef50_C1E418 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E418_9CHLO Length = 410 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 122/318 (38%), Positives = 173/318 (54%), Gaps = 10/318 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IHVDMD FFAA + P L +P+A+GG +ISTANY ARK GVRSAMP + Sbjct: 81 RTWIHVDMDAFFAACHTLERPELASVPMAVGGM----SMISTANYVARKAGVRSAMPGFV 136 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SAT 120 A+KLCP L + F+ Y++ + +RE++ Y + SLDEAYLDVT+ + G Sbjct: 137 AVKLCPALVFVRQDFELYQKYAAMLREVWRVYDKEFDCGSLDEAYLDVTEFMSRTGMDGG 196 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQTLPL 178 +A ++R + + +LT SAGVAP + LAKI SD NKPNGQFV+ + V +FL LP+ Sbjct: 197 EVAAKLRSDVETKTRLTCSAGVAPTRRLAKICSDWNKPNGQFVLERSREAVISFLSDLPV 256 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 K+ GVGKV KL A +RTCG +++ V+ L+ + G + Sbjct: 257 RKVGGVGKVLEGKLSAFQIRTCGQLRQSLNVIAAVFTPATIDFLFSVALGTGTEQRPPDA 316 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 RK +G ERT A EA + L ++ + L K +L +K+K +F+ Sbjct: 317 QRKGLGHERTFA-PTSDPRFIEAKLHGLAEDVAKELQ--KENLKAQTVTLKIKKSNFEVM 373 Query: 299 TQEHVWPRLNKADLIATA 316 ++ P N A +IA A Sbjct: 374 QRQLTVPSSNAAKVIAEA 391 >UniRef50_Q4D5I0 DNA polymerase kappa, putative n=4 Tax=Trypanosoma cruzi RepID=Q4D5I0_TRYCR Length = 604 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 177/337 (52%), Gaps = 25/337 (7%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 R +HVDMD F+AAVEM+ NP+L D+P+ +G ++ST NY AR++GVRS MP Sbjct: 156 FRNYVHVDMDMFYAAVEMKKNPSLVDVPLGVGTF----DMLSTTNYVARRYGVRSGMPGY 211 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 + +KLCP L ++P DAY + +R I + Y + LDE ++VT + H T Sbjct: 212 IGVKLCPSLVIVPTDLDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQHPGMT 271 Query: 121 L--IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI---TPAEVPAFLQT 175 +A E R +F E QLTASAG+ P LAKIAS+ KPNGQ + T +V F++ Sbjct: 272 AGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTRQDVMEFMKD 331 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLL--KRF-----GKFGRILWERS 226 LP+ +PG+G+ + + L +G+ G++ ++ +L +L K F G + W + Sbjct: 332 LPVRTVPGIGRSTESILHGLGINLLGEIYDRRVELCYILTEKTFCFLLGSSMGVVRWMDA 391 Query: 227 QGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ 286 D + +E RKS+G+ERT ++ E + I RRL + + L RQ Sbjct: 392 DTNDGSERTTEAERKSIGMERTF-RNLSSRLELQQIAHSALQTAHRRL---EENELFCRQ 447 Query: 287 GV-KLKFDDFQQTTQEHVWPRLNKADLIATARKTWDE 322 V K K FQ P+ +D + T R+ DE Sbjct: 448 IVLKTKRASFQVHQYSKNLPQ--HSDDLETLRRGVDE 482 >UniRef50_A3EWL3 Polymerase ATREV1-1105 n=8 Tax=rosids RepID=A3EWL3_ARATH Length = 1105 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 143/246 (58%), Gaps = 5/246 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTGM 61 IIH+D+DCFF +V +++ L D P+A+ S +G IS+ANYPAR +GV++ M Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCP L ++P F+AY+E ++ +I R+ +++ LS DEA+LDV+D + Sbjct: 435 AKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVE--TEV 492 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A IR I +ASAG+ +A++A+ + KP GQ I+ +V FL LP+ + Sbjct: 493 LASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTL 552 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PGVG V KL ++TCG ++ L K FG K G +LW S+G+D R V + + Sbjct: 553 PGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612 Query: 241 KSVGVE 246 KS+G E Sbjct: 613 KSIGAE 618 >UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ51_9FIRM Length = 395 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R HVD++ FFA+ E+ +P+L+ PI + G + +R V+STA+Y AR +G+ SAM + Sbjct: 3 RIYFHVDLNAFFASAEILRDPSLKGKPIVVSG-QTKRSVVSTASYEARAYGIHSAMSIIL 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP L ++ G + Y+ S+ I ++ +E S+DE Y+DVTD + + Sbjct: 62 AKKLCPDLEIIEGHYSYYRSLSDEFMTIVRSFSPYMEKASIDECYVDVTDVIQQYKHPLD 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A +++ I+ + L S G+ P FLAK+ASDM KP G V+ +V A L LP+ K+ Sbjct: 122 LAVLLQKAIYQKTGLGCSIGIGPNLFLAKMASDMKKPMGITVLRIRDVEAKLWPLPVHKM 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLL-KRFGKFGRILWERSQGIDERDVNSERLR 240 G+G+ + K+EA+G++T GD+ + L K F L E+ +GID + + R Sbjct: 182 RGIGRKTLPKVEALGIKTIGDLANYQPIQDLGKIFKNSTDSLLEKCRGIDRTPLELDWQR 241 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 KS+GV T+ EDI + E ++ L +L +L K K Sbjct: 242 KSLGVSETLLEDISDYEELRGLLRSLSKKLHHQLEKEK 279 >UniRef50_C3Y6K1 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3Y6K1_BRAFL Length = 1191 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/328 (33%), Positives = 168/328 (51%), Gaps = 51/328 (15%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---------------------ERRG 39 ++ ++H+DMDCFF +V +R++P LR P+A+ S+ E+R Sbjct: 378 IKVVMHLDMDCFFVSVGLRNHPNLRGKPVAVTHSKGKGHEQKIRPGMDPEYERAYWEKRA 437 Query: 40 V----------------------------ISTANYPARKFGVRSAMPTGMALKLCPHLTL 71 I++ +Y ARK GV++ M G ALKLCP L Sbjct: 438 PHRHSITDKTEDNATRGNAQRDTYMSFSEIASCSYEARKAGVKNGMFMGPALKLCPDLKT 497 Query: 72 LPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA-TLIAQEIRQTI 130 +P F+ YKE + + I + YT IE +S DEA++DVTD + G+ +A +R+ I Sbjct: 498 IPYDFEGYKEVAQEMYGILASYTHEIEAVSCDEAFVDVTDILADTGATPDDLATVLRKEI 557 Query: 131 FNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAA 190 + Q AS G+A LA++A+ KPNGQF + P EV F+ + ++PGVG+ + Sbjct: 558 LEKTQCPASVGLASSVLLARMATKRAKPNGQFYLPPEEVLDFVSPQTVRELPGVGRSLES 617 Query: 191 KLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTM 249 +L+ MG+ TCGD+QK L L + FG K G+ L+ +G D+R + ER RKSV E Sbjct: 618 RLKVMGVVTCGDLQKVTLPTLQREFGPKTGQALYRSCRGQDDRQLKVERERKSVSAEINY 677 Query: 250 AEDIHHWSECEAIIERLYPELERRLAKV 277 +E E + L E++RRL K Sbjct: 678 GIRFTKDTEAETFMYNLAEEVQRRLQKA 705 >UniRef50_Q4P422 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P422_USTMA Length = 682 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 194/356 (54%), Gaps = 34/356 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARK-FGVRSAMPTG 60 R I+H D+D F+AAVE+ +P+L+ +G GV+ TA+Y AR+ +GVRS M Sbjct: 146 RTILHTDIDMFYAAVELARDPSLKGKCFGVGS-----GVLVTASYEARRGYGVRSGMAVF 200 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA- 119 +A LCPHL ++ +Y +AS + IF +Y + SLDEAYLD+T+ V + S+ Sbjct: 201 VAKALCPHLIVVKNDMQSYVQASQKVMAIFEQYDENLAKASLDEAYLDITEYVEQNASSI 260 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQTLP 177 + Q++R + + QLT S G+AP LAKI+SD NKP+GQF I P + F++ LP Sbjct: 261 DQVVQQLRNQVRSHTQLTVSVGIAPNTMLAKISSDRNKPDGQFRIQPDRKVIVDFMRNLP 320 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 KIPG+G+V+ LE++G+ TCG++ + + L GK L + GI V Sbjct: 321 CRKIPGIGRVNERILESLGVTTCGEIWDKRVELWLSFDGKI-EWLIKAHLGIGNTVVEPS 379 Query: 238 RL--RKSVGVERTMAEDIHHWSECEAII-------ERLYPELERRLAKVKPDLLIARQGV 288 + RKSVG E T + S+ +A++ +R+ +L R K K L+A Sbjct: 380 KREERKSVGREHTFSP----TSDTKALLDLLKESAQRVEQDLARLDFKAKTITLVA---- 431 Query: 289 KLKFDDFQQTTQEHVWPRL-NKA----DLIATARKTWDERRGGRGVRLVGLHVTLL 339 K D+FQ+ ++ RL ++A D+ ++ ER G +RL+G+ VT L Sbjct: 432 --KRDNFQRFSRARTSTRLVHRAEELYDITSSLLMQEIEREGAISLRLIGVRVTQL 485 >UniRef50_A2DLM9 ImpB/MucB/SamB family protein n=1 Tax=Trichomonas vaginalis RepID=A2DLM9_TRIVA Length = 592 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 196/360 (54%), Gaps = 20/360 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + +H D+D FFA+ E +P+L A+GG + GV+ST +Y ARKFGVRS M + Sbjct: 86 KTYLHADLDSFFASCEALRDPSLVGTAFAVGGEI-KHGVLSTTSYEARKFGVRSGMAVFI 144 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HGSAT 120 AL+LCPHL ++ ++ YK S+ +R+IF +Y S LDEA LD+++ V + A Sbjct: 145 ALQLCPHLKIVESHYELYKHYSSIVRKIFEKYDSHYISFGLDEASLDLSEHVKLDYEKAM 204 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA--FLQTLPL 178 IA+ I++ +F + +LT S G+A LAKIASD+NKPNG F I F+ LP+ Sbjct: 205 DIAKNIQKEVFEQTKLTISCGIAITPQLAKIASDVNKPNGIFEIKHDRESTLDFISKLPI 264 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 KIPG+G V+ L +G+ T DV +K DL + ++ F + ++ GI+ + Sbjct: 265 RKIPGIGGVAEQLLHGIGITTMKDVMDKKTDLWICMRPL--FCQFIFSACLGINRQTFGV 322 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R ++S+ ERT ++ + E IIE+L E+ + L ++ ++L VK K FQ Sbjct: 323 TRHQQSISKERTF-DNTNDRVFMEEIIEKLCMEVCKLLQEM--NVLCRNVTVKFKDSSFQ 379 Query: 297 QTTQ----EHVWPRLNKADLIATARKTWDERRGGRGV--RLVGLHV-TLLDPQMERQLVL 349 T+ +H ++ D+ K ++ R V RL+G+ L P+ +RQ+ + Sbjct: 380 TITRCLSFDHDTNKI--FDIFCACVKILNDELRSRYVKYRLLGVRCGQLSTPRAKRQISI 437 >UniRef50_UPI0001B7B957 DinB1 protein n=3 Tax=Euteleostomi RepID=UPI0001B7B957 Length = 793 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 180/339 (53%), Gaps = 33/339 (9%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+AAVEMRDNP L++ PIA+G +++T+NY AR+FGVR+AMP +A Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKEKPIAVGS----MSMLATSNYHARRFGVRAAMPGFIAK 157 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV---------- 113 +LCP L ++P FD Y+ S ++EI + Y +SLDEAYL++T + Sbjct: 158 RLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQERQGWPEDK 217 Query: 114 --------HCHGSATLIAQEIRQTIFNELQLTASAG-VAPVKFLAKIASDMNKPNGQFVI 164 +C L + F+ L+L G +AP LAK+ SD NKPNGQ+ I Sbjct: 218 RRYFIKMGNCRKIGILTLA-MTTGNFHLLRLAQPQGCIAPNTMLAKVCSDKNKPNGQYQI 276 Query: 165 TPAE--VPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRIL 222 P+ V F++ LP+ K+ G+GKV+ L A+G+ TC ++ + ++ L Sbjct: 277 VPSRSAVMDFIKDLPIRKVSGIGKVTEKMLLALGIVTCTELYQQRALLSLLFSESSWHYF 336 Query: 223 WERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLL 282 + G+ D+ + RKS+ VERT +E I+ E ++ + L EL L K + L Sbjct: 337 LHVALGLGSTDLARDGERKSMSVERTFSE-INKTEEQYSLCQELCTELAHDLQK---EGL 392 Query: 283 IARQ-GVKLKFDDFQQTTQEHVWPRL--NKADLIATARK 318 R +KLK DF+ T+ P D+ A A++ Sbjct: 393 KGRTVTIKLKNVDFEVKTRASTVPSAISTAEDIFAVAKE 431 >UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales RepID=C6CYA7_PAESJ Length = 422 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 116/356 (32%), Positives = 192/356 (53%), Gaps = 9/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNP-ALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPT 59 R I+H+DM+ F+ +V + P + P A+ GS E R+G+I T +Y AR G+++ M Sbjct: 13 RVILHLDMNAFYCSVHEAEEPEKYKGKPTAVAGSVELRKGIIVTCSYAARSKGIKTGMTV 72 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A+++CP+L ++ F+ Y++ S +I YT +EP+S+DE Y+D+T S GS Sbjct: 73 RQAMRMCPNLIIIQPDFELYRKYSRGFMKIAREYTPLVEPISIDECYMDITGS-KIFGSP 131 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA+ +++ I E L S GVAP K LAK+ASDM KPNG V+ +VP L P Sbjct: 132 LEIAEALQKRIAEEWTLPCSIGVAPNKLLAKMASDMKKPNGLTVLRLRDVPTILWDKPCD 191 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 + G+GK +A KLE + +RT G + D +L+++FG +G + + GID +V ++R Sbjct: 192 VLHGLGKKTADKLERLRIRTIGQLAAADEELLIRQFGIYGSWMKSAAHGIDHSEVRADRE 251 Query: 240 R-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 + KS+G T+ D+ + I+ L + RRL + K L+ + + ++ D Sbjct: 252 QSKSIGHTTTLPYDVTDREDAHRILLNLADQTARRLRRQK--LMASTVQITIRKPDMATI 309 Query: 299 TQEHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ P + + A + +DE +G RL+G+ + L + E + L L Sbjct: 310 TRSSTLRAPTHSTDMIYHEACRLFDEHWKGSEPARLLGVTLQNLTAEEETAVQLDL 365 >UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5S0_SPHTD Length = 394 Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 132/351 (37%), Positives = 192/351 (54%), Gaps = 19/351 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H D+D FFAA E+ P LR P+ +GG RGV++ A+Y AR +GVRSAMP Sbjct: 9 RVIVHADLDAFFAAAEILRRPELRGKPVIVGGRPGGRGVVAAASYEARAYGVRSAMPIAQ 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++LCPH LPG Y+E S R I R++ +E +S+DEAYLD++ S G Sbjct: 69 AVRLCPHGVFLPGDHAYYRELSGRFRAILERFSPLVEMVSVDEAYLDLSHSERSVGPPLE 128 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A+ I++ + EL LT S GVA + +AKIASD++KP+G +I P L LP+ ++ Sbjct: 129 AARAIKRQVREELGLTVSLGVATSRLVAKIASDLDKPDGLRLIEPGAEAVTLAPLPVERM 188 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER-LR 240 PG+G S +L+ +G+ T G + + L FG+ + R++GID R VN ER Sbjct: 189 PGIGPKSVERLQRIGVTTLGGLARMPAAALRPIFGRRADEVIARARGIDPRPVNPEREPA 248 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR-QGVKLKFDDFQQTT 299 KS+G ERT +D+ E E LY ER ++ + L R VKL++ DF+ Sbjct: 249 KSIGRERTFGQDLTDRHEIE---RALYHLAERTGRDLRREGLQGRVVAVKLRYSDFETVG 305 Query: 300 QEHVWPRLN---------KADLIATARKTWDERRGGRGVRLVGLHVTLLDP 341 ++ PR DL+A + +ER+ VRL+G+ V L P Sbjct: 306 RQRRLPRPTDDHQEIAEVAMDLVA---RLLEERQA--PVRLLGVRVAGLGP 351 >UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIB1_KYTSD Length = 407 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 109/294 (37%), Positives = 160/294 (54%), Gaps = 7/294 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++HVDMD F+A+V + D P LR P+ +GG R V+ +A Y AR FGVRSAMP A Sbjct: 12 VLHVDMDAFYASVALVDRPELRGQPVIVGGGH--RSVVLSATYEARAFGVRSAMPMARAR 69 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP T++ + Y S + EIF + T ++P S+DEA+LDVT + GS +A Sbjct: 70 RLCPQATVVRPDHERYAAVSAAVMEIFRQVTHAVQPTSVDEAFLDVTGTSRRWGSPLQVA 129 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + IR+T+ E +T S G+ P F+AK+AS KP+G +TPAEV +FL L + + G Sbjct: 130 EWIRRTVAAEQHITCSVGIGPNPFVAKVASGQAKPDGTRQVTPAEVVSFLHPLDVGVLWG 189 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 VG+ + +L GL T V +V L + G G L ER+ G D + V K+ Sbjct: 190 VGEKTQEQLARFGLTTVAQVAHTPVVTLQRIVGDHAGAALAERAWGRDPQRVRPVVAEKT 249 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDF 295 +G +T DI + E RL +R A+ + ++ R V ++F DF Sbjct: 250 IGNGQTFDHDIDDPRQVET---RLLLLSDRVAARARTAGVMGRTVQVTVRFADF 300 >UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECH9_9ACTN Length = 417 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 179/345 (51%), Gaps = 15/345 (4%) Query: 7 VDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLC 66 +D+D FFA+VEM D+P R P+ +GG + RGV+ST +Y AR+FGV SAMP+ A +LC Sbjct: 29 MDLDAFFASVEMLDHPEWRGKPLIVGGDADSRGVVSTCSYEARRFGVHSAMPSAEARRLC 88 Query: 67 PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEI 126 P G FD Y+E S + I + T R+E +S+DEA++D+T +A+ I Sbjct: 89 PQAIWTHGHFDRYREVSAQVMAILADETPRVERVSIDEAFIDITPGRFAPEDPLQVARRI 148 Query: 127 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGK 186 + L +T S GV K +AKIAS+ +KP G ++ P FL LP++ + G+G+ Sbjct: 149 SDRV-AALGVTCSIGVGCNKTVAKIASERDKPFGLTIVRPGTEQRFLAALPVSAMSGIGR 207 Query: 187 VSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS---ERLRKSV 243 + +L M + T G++ + L FG G + +R+ G++ +V S ER KSV Sbjct: 208 SAEERLRRMRIYTLGELSRAPESTLASIFGVNGERMRQRALGLEISEVTSLDEEREVKSV 267 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 ERT A+D+ + EA I L + RRL + L A +KLK+ T + Sbjct: 268 SNERTFAKDLTERGDIEAAIALLGESVGRRLR--RQGLTGATVTLKLKYSYGSGRTAQRR 325 Query: 304 WPRLNKADLIATA------RKTWDERRGGRGVRLVGLHVTLLDPQ 342 P + I A K W + G VRL G+ ++ D Q Sbjct: 326 LPHPTDDENIFVAVALELLDKIWQK---GMHVRLAGVGMSDFDHQ 367 >UniRef50_O74944 DNA polymerase kappa n=1 Tax=Schizosaccharomyces pombe RepID=POLK_SCHPO Length = 547 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 114/350 (32%), Positives = 183/350 (52%), Gaps = 24/350 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVD D F+A++E NP L+ +P+A+G S V+ TANY ARKFGVRSAMP +A Sbjct: 132 IVHVDCDAFYASIEELKNPKLKSLPMAVGKS-----VLCTANYVARKFGVRSAMPEFIAR 186 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA---- 119 K+CP L ++P Y S I+ + ++Y S + P S+DE Y+++T + A Sbjct: 187 KICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQELAFTVE 246 Query: 120 --TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQT 175 T++ ++IR+ + E +T S G+A K LAKIAS+ KPN QF I E + F+ Sbjct: 247 NITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMND 306 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQK----CDLVMLLKRFGKFGRILWERSQGIDE 231 LP+ ++ G+G+V +L + ++TCGD+Q+ + L K F R + G Sbjct: 307 LPVREVSGIGRVLEQQLLGLEIKTCGDIQRNLVILSYIFLPKSFQNLLRCSY--GFGTTI 364 Query: 232 RDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 D E RK++G E T + ++ S E + L + L K L+ +K K Sbjct: 365 LDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQ--KRGLVTNSIAIKYK 422 Query: 292 FDDFQQTTQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLL 339 +FQ T++ + +++DL+ A + + +RL+G+ T L Sbjct: 423 TSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSY-PMTIRLLGVRATKL 471 >UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FCD1 Length = 419 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 160/293 (54%), Gaps = 5/293 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++H+DMD FF +VE+ P L P+ +GG R RGV+ +A+Y AR+FGV +AMP G A+ Sbjct: 25 MLHLDMDSFFVSVELLSRPELVGRPVIVGG-RSGRGVVVSASYEAREFGVHAAMPMGRAM 83 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 LCP ++P Y S + ++ ++ T + +S+DEAY+DV+ +V GS I Sbjct: 84 NLCPFAEVIPPSHGLYSSYSQKVFDLVAQVTPDFQQVSVDEAYIDVSAAVRRLGSPVRIT 143 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 ++R I + L+AS G+A + +AK+AS KP+GQ ++ + FL +P+ +PG Sbjct: 144 SQLRAEIEAQTGLSASVGIAGSRVVAKLASTRAKPHGQLLVPLSATREFLDPMPIEALPG 203 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG+ + G+R GD+ D + FG G LW + G+D ++ + +S+ Sbjct: 204 VGEKTKEGFFRYGIRLIGDLAAVDEAWAGRVFGAHGHHLWRSAHGLDSHGMDRQVKDRSI 263 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDF 295 E T ED+ S+ E + RL ++ R V+ D +A G+K + DF Sbjct: 264 SAEHTFNEDVWDLSQLEHELLRLADKVAHR---VRADGKVATTLGLKYRLADF 313 >UniRef50_B1AJ79 DNA polymerase IV n=15 Tax=Ureaplasma RepID=DPO4_UREP2 Length = 360 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 193/357 (54%), Gaps = 18/357 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+D+D F+A V +P ++ PIA+G R G+IS+ NY AR +GV++AMP +A Sbjct: 9 IMHLDIDAFYATVSELLHPEYKNFPIAVGSLNSRTGIISSPNYLARSYGVKAAMPIFLAK 68 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLI 122 +LCP+L +LP + Y+ S H +I ++YT++IE S+DE ++D TD V H + L+ Sbjct: 69 ELCPNLIILPSEHNIYQSYSKHFFQIINKYTNKIEITSIDECFIDATDLVKKYHNNIRLL 128 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A +I++ I N+L L+ S G++ K +AK+A+++NKP+G +I ++ + L + KIP Sbjct: 129 ATKIQKEIKNKLNLSISIGISYNKTIAKMATELNKPSGISIIDENKIINLIYELNINKIP 188 Query: 183 GVGKVSAAKLEAMGLRTCGDV------QKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 +G++ + +L A+ + ++ QK LV+ G + L +G+ + + Sbjct: 189 YIGEIKSQELYAINIFKIKELIATENKQKISLVL-----GSIYQNLVNDLKGLSKIKIID 243 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 E + K++ +T ED++ + E + L + RL K +L+ + +K+ F+ Sbjct: 244 EDIYKTISHSKTFNEDLNDFYEISNEMNDLILTVTNRLKKC--NLMTNNISIYIKYPSFK 301 Query: 297 -QTTQEHVWPRLNKADLIATARKT-WDERRGGRGVRLVGLHVTLL--DPQMERQLVL 349 + Q+ + + I A K + +RL+G+ + L +++QL L Sbjct: 302 TKIKQKQLTYYTDDYQTIFLAIKNLFKIMYKDETIRLIGISLNKLVKKENVKKQLFL 358 >UniRef50_A8PXZ2 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PXZ2_MALGO Length = 525 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 196/369 (53%), Gaps = 37/369 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H DMD F+AAVE++ P L A+G GV+ TA+Y AR+FGVRSAM + Sbjct: 40 RTILHCDMDMFYAAVELQRRPELAGACFAVG-----HGVLLTASYEARQFGVRSAMAEFV 94 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +CP+L ++P D YK +S + + ++Y +++ SLDEAYLD+T HG A Sbjct: 95 ARAICPNLIVVPAHMDVYKRSSEAVMAVLAKYDAQLYQRSLDEAYLDITSYCAEHGHAHP 154 Query: 122 --IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA--EVPAFLQTLP 177 +A ++R + LT S G+AP + LAKIASD KPNG + + P + AF+ L Sbjct: 155 RDVAAQLRADVLAATGLTVSVGIAPNRLLAKIASDRCKPNGLWYVAPTRQDALAFMHDLS 214 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 + K+PG+G+V L+AM + TC D+ ++ +L + + + R+L + GI + V Sbjct: 215 VRKVPGIGQVMERMLQAMSIHTCHDLWERRIELSLCIDSY----RMLLASALGIGDAHVT 270 Query: 236 --SERLRKSVGVERTMA---EDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKL 290 + R+SVG E T A + H ++ A E +LER LA ++ + V L Sbjct: 271 LPARTARRSVGRELTFAPTSDPTHLHAKLRATCE----QLERDLATLE----YRGRTVSL 322 Query: 291 --KFDDFQQTTQEHVWPRLNKA--DLIATARKTWDERRGGRGV----RLVGLHV-TLLDP 341 K D F++ T+ P+ + DL ++ R V RL+G+ V +L+D Sbjct: 323 VGKHDTFERFTRARACPQGVSSFDDLYGVVHALLEQERASFPVPLCLRLIGVRVSSLIDL 382 Query: 342 QMERQLVLG 350 Q+ R VL Sbjct: 383 QVARNGVLA 391 >UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus RepID=C5D272_GEOSW Length = 414 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 183/345 (53%), Gaps = 21/345 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPAR-KFGVRSAMPT 59 R I HVD + FFA+ E+ +P+L+ + + G +ER+GV+ ANY A+ +FG+ + MP Sbjct: 10 RVIFHVDCNSFFASCEIARDPSLKGKAVVVAGDPKERKGVVLAANYIAKQRFGIYTTMPL 69 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A K CP L +L F Y+E S + + + +T +E S+DE YLD+TD + GS Sbjct: 70 WEAKKRCPQLVVLKPDFHLYREISEKVFQFLATFTPVLERASIDEGYLDITD-CYSLGSP 128 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA++I++ + L + S G+AP KFLAK+AS+M KP G V+ +VP L LP+ Sbjct: 129 LDIAEQIQKELLQTLHIPVSIGIAPNKFLAKMASNMKKPLGITVLRKRDVPKVLWPLPVQ 188 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 ++ G+G +A KL ++G+ T G++ K + V L G G L E + GID R V+ E Sbjct: 189 EMHGIGDKTAKKLNSIGIFTIGELAKAEKVTLQNLLGITGVRLKEWANGIDPRPVDPESG 248 Query: 240 R--KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKV------KPDLLIARQGVKLK 291 KS+G T+ ++ ER+ E+ R LA+ + ++ + + ++ Sbjct: 249 EKWKSIGSSTTLPRNVTE--------ERILLEVLRDLAQSVSNRMKQKGVVSSTVQIMIR 300 Query: 292 FDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGL 334 + +FQ T+ W P ++ A G VRL+G+ Sbjct: 301 YSNFQTITRSKTWENPFQEAEEIFQRAVYLLKRHWNGNPVRLLGI 345 >UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bifidobacteriaceae RepID=B7GNF3_BIFLI Length = 448 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/307 (33%), Positives = 161/307 (52%), Gaps = 9/307 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++H+DMD F+A++E+ NP L+ P+ IG R V+S A+Y AR++G+ SAMP A Sbjct: 47 VLHIDMDAFYASLEVARNPGLKGKPVIIGTGP--RAVVSAASYEARRYGINSAMPAARAH 104 Query: 64 KLCPHLTLLPGRFDAYKEASNHI-REIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP+ LP Y+ S+ I E+F T R E +S+DE Y+DV+ ++ G + I Sbjct: 105 QLCPNGVFLPVDMAYYRMMSHRIMHEVFLTVTDRFEQVSVDEGYMDVSTALLEWGRPSAI 164 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 IR + +T S G+A K +AK+AS KP+G +I A F+Q +PL IP Sbjct: 165 GAWIRAQVAERFHVTCSVGIACNKLVAKMASTNAKPDGMLLIPAARSAEFVQMMPLRGIP 224 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK--FGRILWERSQGIDERDVNSERLR 240 G+G +L A G+ + ++ + D L + G R LW S G+D R + + R Sbjct: 225 GIGPSLEKRLNAWGVHSVAELAQLDETALTRATGSPAAARGLWAASHGLDSRKITTVREE 284 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT 299 KS+G E T+AED + + L + + ++ L+AR VKL+F D T Sbjct: 285 KSIGSEETLAEDTR---DMRVVCGLLRSACDEVASTLRRKGLVARTLTVKLRFADLSYQT 341 Query: 300 QEHVWPR 306 + R Sbjct: 342 RSFTMER 348 >UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM9_ERYRH Length = 392 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 182/343 (53%), Gaps = 5/343 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I H+D++ F+A+ + + +L P+ + S +R V++TA+Y AR FGV SAMP A Sbjct: 5 IFHIDINAFYASAHLITDSSLYGKPVVVC-SNQRGSVVTTASYEARSFGVNSAMPLAHAK 63 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP+L ++ FD Y+E S I Y++ ++P S+DE Y+D+T+ + + +A Sbjct: 64 RLCPNLEVIEVDFDLYQELSVKFMNIIRSYSAVMQPASIDECYVDMTEVIKKYEKPLDLA 123 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 EI++ I+ L+L S GVAP KFLAK+ASDM KP G V+ EV L L + + G Sbjct: 124 VEIQKNIWEALRLPISIGVAPNKFLAKMASDMQKPRGITVLRIREVSQKLWPLSIESMYG 183 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 +G+ + KL+ +G+ T GD+ + + L G + +++ G D ++++ KS+ Sbjct: 184 IGQKTVPKLKQIGIETIGDLARFNPDHLKSILGVNAQNFVQKANGYDHSVIDTDVTMKSI 243 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G +T + + E I E++RR+ + D++ ++ DD++ T+ Sbjct: 244 GQSKTFKDAMTDLDEIRNAILNELVEVKRRME--RQDVVGKTVSFSIRLDDYKTATRSFT 301 Query: 304 WPRLNKADLIATAR--KTWDERRGGRGVRLVGLHVTLLDPQME 344 + + + R +DE G GV + + +T L P+ E Sbjct: 302 FDEYTRDQNLVFERLMSLYDEFEGEGGVSFISVTMTNLLPKDE 344 >UniRef50_B8M4C5 DNA-directed polymerase kappa, putative n=14 Tax=Leotiomyceta RepID=B8M4C5_TALSN Length = 654 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 105/258 (40%), Positives = 150/258 (58%), Gaps = 20/258 (7%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++HVD D FFAAVE D P L+ +P A+G +GV++T NY ARKFG RS M +A Sbjct: 119 VVHVDCDAFFAAVEELDRPELKHLPFAVG-----KGVLTTCNYVARKFGCRSGMAGFVAK 173 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS---AT 120 KLCP L +P ++ Y + IR IF++Y E S+DEAYL++T +C + Sbjct: 174 KLCPDLICIPQNYEKYSAKAEEIRAIFAQYDPCFESASIDEAYLNIT--AYCDENNMDPQ 231 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE---VPAFLQTLP 177 Q++R I E ++T SAG+A LAKIAS+ NKPNGQ+ I P+E + +F++ LP Sbjct: 232 EAVQQMRARIAEETKITVSAGIATNTKLAKIASNQNKPNGQYFI-PSEREAIMSFVKDLP 290 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF--GKFGRILWERSQGIDERDVN 235 + K+ G+G+V +L A+G+ TCG + LLKR GK + L + G+ + Sbjct: 291 VRKVNGIGRVFERELRAVGIETCGQIYP--QRALLKRLFGGKAFQFLMQCYLGLGRTKIQ 348 Query: 236 --SERLRKSVGVERTMAE 251 + RKSVG E T AE Sbjct: 349 PAEDYERKSVGTESTFAE 366 >UniRef50_A8IAM0 DNA polymerase kappa (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IAM0_CHLRE Length = 429 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 124/324 (38%), Positives = 180/324 (55%), Gaps = 32/324 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R +HVDMDCF+AAV R+ P L+ +P+A+GG G+ISTANY AR+FGVRSAMP + Sbjct: 88 RTWLHVDMDCFYAAVHEREQPELKRLPVAVGGM----GMISTANYVARRFGVRSAMPGFI 143 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 +LCP L + F Y EA+ +R F + E LDEAYLDVT +C +AT Sbjct: 144 GKRLCPKLVFVKPDFAKYTEAAAVVRGAFKQLDPDFESGGLDEAYLDVTG--YCTRTATS 201 Query: 122 ---IAQEIRQTIFNELQ--LTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQ 174 A E+R+ + E+ LT S GVA K LAKI SD+NKP+GQ+V+ + A V +FL Sbjct: 202 GEEAATELRRLV-KEVSGGLTCSVGVACNKMLAKICSDINKPDGQYVLPASRAAVMSFLD 260 Query: 175 TLPLAKIPGVGKVSAAKLEA-MGLRTCGDV----QKCDLVMLLKRFGKFGRILWERSQGI 229 TLP+ KIP +GKV+ L+ +G+ TCG + +C L +L E + G+ Sbjct: 261 TLPVRKIPCIGKVTEQVLQGVLGVSTCGQLLAPASRCRLPLLFSEAA--AGFFLEAALGL 318 Query: 230 ------DERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + D + + RK + ERT ++ +E EA+ ++L +E +A + + + Sbjct: 319 APTRHGPKTDTSVDPGRKGLSHERTF-RNMSAPAEQEAMAKQL---VEALVADMAEEGIE 374 Query: 284 ARQ-GVKLKFDDFQQTTQEHVWPR 306 R +KLK F+ T+ PR Sbjct: 375 GRNITLKLKLSTFEVHTRAATMPR 398 >UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidobacterium RepID=A1A051_BIFAA Length = 471 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 161/303 (53%), Gaps = 7/303 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++H+DMD FFA++E+ +P D P+ IG R V+S ANY ARK+G+ SAM + A Sbjct: 51 VLHIDMDAFFASLEVARHPEYADKPVIIGIGN--RSVVSAANYEARKYGINSAMASSRAR 108 Query: 64 KLCPHLTLLPGRFDAYKEASNHI-REIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 KLCP+ LP Y+E S I E+FSR T RIE +S+DE Y+DV+ ++ S I Sbjct: 109 KLCPNGVFLPVDIHYYREMSRRIFTEVFSRVTDRIEQVSVDECYMDVSGALLRWKSPRAI 168 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 IR + +T S G+A K +AK+AS KP+G +I A F+Q +PL IP Sbjct: 169 GAWIRDQVARRYHITCSVGIAANKLVAKMASTNAKPDGMLMIPVARHAEFVQMMPLRGIP 228 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF--GRILWERSQGIDERDVNSERLR 240 G+G +L A G+ + D+ K + L + G R L+ ++G+D+R V Sbjct: 229 GIGPSLEKRLNAWGVDSVADLAKMSMESLEQATGSAISARGLYMAARGLDDRPVAPRAQG 288 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG ERT +D + +++ ++ L + L+ + VKL+F D T+ Sbjct: 289 KSVGAERTFDKDTQDMRQVTSMLRWCCDDVAGTLR--RRGLMARKVMVKLRFPDLSYATK 346 Query: 301 EHV 303 H Sbjct: 347 GHT 349 >UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidetes RepID=C6W6Q9_DYAFD Length = 416 Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 112/344 (32%), Positives = 176/344 (51%), Gaps = 14/344 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H D+D FF +VE + + L++ PI +GG+ +R GV++ +Y R+FGV S MP M Sbjct: 10 RAILHFDLDTFFVSVERKQDSRLQNKPILVGGTGDR-GVVAACSYETRQFGVHSGMPMKM 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT---DSVHCHGS 118 A LCP T++ G + Y + S + EI S++ E S+DE Y D++ +C+G Sbjct: 69 ARMLCPEATVIRGNGETYSKHSKEVSEIISQHVPVFEKASIDEFYADLSGMDKYFNCYG- 127 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 +A ++RQ I E L S G+A K ++K+A+ KPN Q + P FL + + Sbjct: 128 ---MASDLRQRIIRETGLPISFGLATNKLVSKVATGEAKPNNQLRVEPGAEKTFLAPMEV 184 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 KIP VG L +G+R +Q+ + M+ K FGK G LW R+ G+D + Sbjct: 185 QKIPMVGDKMNQTLNNLGIRYVKTIQEMPMEMMGKVFGKNGVALWNRANGLDNSPIVPFH 244 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 RKS+ ERT +D + ++ + L +L D L + VK+++ DF T Sbjct: 245 ERKSISSERTFGKDTGDVRKMREMVRAMAETLAFQLR--TGDKLTSCVSVKIRYSDF-NT 301 Query: 299 TQEHVWPRLNKAD--LIATARKTWDERRGGR-GVRLVGLHVTLL 339 + + AD LI + +D+ R VRLVG+ + L Sbjct: 302 FSKQLKIAYTSADHVLIPHIERLFDQLYNRRMMVRLVGVSFSDL 345 >UniRef50_D2JWS9 Putative DNA-directed polymerase kappa n=1 Tax=Filobasidiella depauperata RepID=D2JWS9_9TREE Length = 570 Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 108/287 (37%), Positives = 163/287 (56%), Gaps = 35/287 (12%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 IIHVDMD F+A+VE++ +P+L++ +G RGV++TA+Y ARKFGVRS M +A Sbjct: 101 IIHVDMDAFYASVEVQRDPSLKNKAFGVG-----RGVLTTASYEARKFGVRSGMAGFIAK 155 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP++ L FD Y AS +REI +Y + SLDE YL Sbjct: 156 KLCPNIILTDTHFDLYIAASKSVREILEQYDENLMMASLDEGYL---------------- 199 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLA---KIASDMNKPNGQFVIT--PAEVPAFLQTLPL 178 + +R + E +T SAG+AP + LA KI SD NKPNGQ+ + +++ F++ LP+ Sbjct: 200 KHLRNQVEKETNMTISAGIAPNRMLAKMGKICSDKNKPNGQYEMNFERSKIVRFMRDLPV 259 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 KIPG G+V+ LE++G+++CGD+ ++ +L+++ G G L GI + +V Sbjct: 260 RKIPGFGRVTERYLESLGVKSCGDIYDKRAELLVMNHWLGFRG--LCRTYLGIADNNVTP 317 Query: 237 ERL--RKSVGVERTM---AEDIHHWSECEAIIERLYPELERRLAKVK 278 + RKSVGVERT D + +I++ L +LER + K Sbjct: 318 RKREERKSVGVERTFRNKTNDEDIMNTLSSIVDELERDLERLRTRAK 364 >UniRef50_P34409 DNA polymerase kappa n=6 Tax=Chromadorea RepID=POLK_CAEEL Length = 503 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 130/406 (32%), Positives = 198/406 (48%), Gaps = 83/406 (20%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R + +DMD +FAAVEMRDNPALR +P+A+G S ++ST+NY AR+FGVR+ MP + Sbjct: 83 RDCVCIDMDAYFAAVEMRDNPALRTVPMAVGSS----AMLSTSNYLARRFGVRAGMPGFI 138 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 + KLCP LT++PG + Y + S +IF Y S + +SLDEA++D+TD V Sbjct: 139 SNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDLTDYVASNTEKKT 198 Query: 114 -----------------------------------HCHGSATLI----------AQEIRQ 128 C S + + +R+ Sbjct: 199 FKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIYYDHVEFGTGREEAVRE 258 Query: 129 TIFNELQLTA---SAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQTLPLAKIPG 183 F QLT SAG+A LAKI SD+NKPNGQ+V+ + + FL+ LP+ K+ G Sbjct: 259 IRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIMEFLKDLPIRKVGG 318 Query: 184 VGKVSAAKLEAMGLRTCGDVQ-KCDLVMLLKRFGKFGRILWERSQ-GIDERDVNSERLRK 241 +G+V A+L+AM ++T GD+ K +L L F + + R+ G+ R S+ RK Sbjct: 319 IGRVCEAQLKAMDIQTVGDMNLKKNLYPLC--FTPLSQESFLRTALGLPGRPSESDPRRK 376 Query: 242 SVGVERTMA--EDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 S+ VERT + D + E I R+ E R+ V + +KLK F T Sbjct: 377 SISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVT----LKLKLSSFDVLT 432 Query: 300 QEHVWPRLNKADLIATARKTWD------ERRGGRGVRLVGLHVTLL 339 + L +D++ + E+ G+ +RL+G+ ++ L Sbjct: 433 RS-----LTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQL 473 >UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PEH3_9FIRM Length = 415 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 150/277 (54%), Gaps = 12/277 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+HVD D F+A+VE NPALR P+A+ G E R G++ + A+ FGV++ Sbjct: 6 RTILHVDCDAFYASVECLYNPALRGRPVAVVGDPELRHGIVLAKSQEAKLFGVQTGDALW 65 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + C +T +P F+ Y S +EIFS Y+ R E LDE+++D+T G Sbjct: 66 QARQKCKEITFVPAHFEKYLSFSRMTKEIFSEYSDRCESFGLDESWIDLTGCTELFGDGP 125 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A +IR+ I EL +TAS GV+ K AK+ SD+NKP+G VI + LP+ Sbjct: 126 AVATQIRRRIKEELGITASVGVSFNKVFAKLGSDLNKPDGMTVIAYDGFKEQVWPLPVKT 185 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDE---RDVNSE 237 + VG+ + KL++ G+ T G + + + L RFGK GR+LW + G+D ++ ++ Sbjct: 186 LLYVGRATTGKLKSYGITTIGALAQAPITFLEHRFGKIGRMLWMFANGLDTSPVSNIGAK 245 Query: 238 RLRKSVGVERTMAED--------IHHWSECEAIIERL 266 L KS+G T D I ++ CE+I RL Sbjct: 246 SLIKSIGNSTTAPRDLITDQEIKITLYALCESISARL 282 >UniRef50_A9UNE7 GH11153p (Fragment) n=8 Tax=Drosophila RepID=A9UNE7_DROME Length = 1012 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 50/327 (15%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAI----GGS----------------------- 34 R ++H+DMDCFF +V +R P LR +PIA+ GG+ Sbjct: 290 RYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELELFAQR 349 Query: 35 ------------RERRGV--------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPG 74 + R G I++ +Y AR+ G+R+ M G ALKLCP L +P Sbjct: 350 FEHHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPY 409 Query: 75 RFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSATLIAQEIRQTIFNE 133 F+ YKE + + + ++YT IE +S DE ++++TD H + +RQ ++++ Sbjct: 410 DFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSK 469 Query: 134 LQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVPAFLQTLPLAKIPGVGKVSAAKL 192 SAGVA K LA++A+ KPNGQF++ + ++ A++ + L +PGVG + KL Sbjct: 470 TGCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKL 529 Query: 193 EAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAE 251 + GL CGDVQ L + K G K G+ L++ +GID+R + E++RK+V E Sbjct: 530 KQAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGI 589 Query: 252 DIHHWSECEAIIERLYPELERRLAKVK 278 + ECE + +L E+ +RL +++ Sbjct: 590 RFTNSVECEQFLCQLSEEVTKRLVEIR 616 >UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_STRCO Length = 479 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 123/342 (35%), Positives = 173/342 (50%), Gaps = 10/342 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFA+VE P+LR + +GG R GV++T +Y AR FGV SAMP G A Sbjct: 7 ILHLDMDAFFASVEQASKPSLRGKAVVVGGLGPR-GVVATCSYEARVFGVHSAMPMGQAR 65 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAY--LDVTDSVHCHGSATL 121 +L PH L RF+ Y+ S + + + +EPLSLDEA+ LD + +A L Sbjct: 66 RLAPHAAYLVPRFELYRSISEQVMRLLRELSPLVEPLSLDEAFVDLDAGGAARDAETARL 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 ++R I LT S G+A K LAKIAS+ KP+G +I P A L+ + + + Sbjct: 126 AGTKLRTDIRTVTGLTGSVGLAASKMLAKIASEAAKPDGLVLIPPGTERAMLEPMTVRTL 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 PGVG + L G+ T G++ + L++ GK G L+ + DER V +ER Sbjct: 186 PGVGPATGDHLRRAGITTVGEIAEAGEDELVRLLGKAHGHALYAMALARDERPVVAERET 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV-KLKFDDFQQTT 299 KSV VE T DIH + RL RRL + L R V K++ DF T Sbjct: 246 KSVSVEDTYDVDIHDRVRVGVEVGRLADRCVRRL---RASGLSGRTIVLKVRRYDFSTLT 302 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL 339 + P + A + A + D GVRL+G+ V+ L Sbjct: 303 RSETLRGPTDDPAVVREAAARLLDSVDTTGGVRLLGVGVSGL 344 >UniRef50_Q7Q6B2 AGAP005939-PA n=2 Tax=Culicidae RepID=Q7Q6B2_ANOGA Length = 1055 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 101/325 (31%), Positives = 161/325 (49%), Gaps = 48/325 (14%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR-----------ERRGV---------- 40 R I+H+DMDCFF +V +R P LR +P+A+ SR + R + Sbjct: 288 RYIMHIDMDCFFVSVGLRKYPHLRGLPVAVTHSRGSEARVPSHPGQNRALEIELYHKRLE 347 Query: 41 -------------------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGR 75 I++ +Y AR+ GV++ M G ALKLCP L +P Sbjct: 348 ERYKAPDIPIESRLAAIDEHNSLSEIASCSYEARQCGVKNGMFVGAALKLCPELKTIPYD 407 Query: 76 FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL-IAQEIRQTIFNEL 134 FD Y+E ++ + + +RYT IE +S DE ++D+T+ + G + +R I Sbjct: 408 FDGYREVAHQLYDTIARYTLDIEAVSCDEMFVDLTELLQSTGVGVMEFVTYVRNEISTAT 467 Query: 135 QLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEA 194 SAG+ + A++A+ KPNGQ+ + P V +++ +P+A++PGVG ++ +L Sbjct: 468 GCDCSAGIGANRLQARMATKRAKPNGQYHLVPGAVEEYMKVIPIAELPGVGPSTSHRLRK 527 Query: 195 MGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDI 253 M TC D+Q +L FG KFG L+ +GIDER + +R RKSV V+ Sbjct: 528 MTYVTCADLQTIPKNVLQTEFGKKFGETLYNACRGIDERPLVYDRGRKSVSVDVNYGIRF 587 Query: 254 HHWSECEAIIERLYPELERRLAKVK 278 E E + +L E+ RRL +++ Sbjct: 588 STEQEVERFMRQLTQEIHRRLVELR 612 >UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8L3_9ACTN Length = 432 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/347 (32%), Positives = 182/347 (52%), Gaps = 19/347 (5%) Query: 7 VDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLC 66 +D+D FFA+VE D+P R P+ +GGS E+RGV+ST +Y AR +GVRSAM + A +LC Sbjct: 26 MDLDAFFASVEQLDHPEWRGKPVIVGGSPEKRGVVSTCSYEARVYGVRSAMSSAQAKRLC 85 Query: 67 PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEI 126 P PG FD Y+E S + I + T ++ +S+DEA+ D++ C IAQ I Sbjct: 86 PEAIWTPGHFDRYREMSARVMAILADETPFVDRVSIDEAFFDISPGRFCDEHPIQIAQRI 145 Query: 127 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGK 186 + + +EL +T S G+ K +AKIAS+ +KP G ++TP FL LP+ + G+G Sbjct: 146 SRRV-SELGITCSIGLGRNKTVAKIASERDKPRGLTIVTPGTEHGFLAPLPVRAMSGIGA 204 Query: 187 VSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGI---DERDVNSERLRKSV 243 + + L +G+RT G + + +L FG ++ R+ G+ + R +++ KS+ Sbjct: 205 AAESALARVGIRTLGQLAEASDGLLSPIFGINTELVRRRAAGLEVSEVRAIDAPDDVKSI 264 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD--------F 295 ERT A D+ S+ +A I+ L + RL + +K F + Sbjct: 265 SNERTFAHDLTDPSDVKAAIQLLSESVGARLRRRGLAGRTVTLKLKYSFGEGRTIQRKLA 324 Query: 296 QQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQ 342 T E+V+ + + DL+A+ W E G +RL G+ V+ P Sbjct: 325 HATDDENVFGAVAR-DLLAS---IWTE---GMHIRLAGVGVSDFGPD 364 >UniRef50_D1Y4D1 DNA polymerase IV n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4D1_9BACT Length = 412 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 177/351 (50%), Gaps = 9/351 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 +IHVDMD F+AAVE+RDNPAL+ P+ IG + RGV++T +Y ARKFGV SAM A Sbjct: 5 VIHVDMDAFYAAVEIRDNPALKGRPLIIGALPDERGVVATCSYEARKFGVHSAMNIKEAY 64 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 + CP + + Y++AS+ + I+S Y E ++LDE YLDVT S G A +A Sbjct: 65 RRCPRGIFMHPNREKYRQASDRLHGIWSSYADVAEYVALDEGYLDVTRSALRFGGARRVA 124 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQF-VITPAEVPAFLQTLPLAKIP 182 + I++ E LT S GV K AK+AS+ KP+G F ++TP + + + + Sbjct: 125 RLIKERTRAETGLTCSVGVGYSKTSAKLASEEKKPDGYFEILTPRDFIGLIIDRDITVLY 184 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV--NSERLR 240 GVG +A KL G+ T DVQ + GK GR L E S GID+R V E Sbjct: 185 GVGARTAEKLYHAGIHTVRDVQNNRERLAALLGGKTGRHLAELSLGIDDRPVIPADEADA 244 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK--FDDFQQT 298 KS+ E T +D H+ +I L L RLA L + + V LK + + + Sbjct: 245 KSISREVTFQKDTSHFGYLRDVILLLSLNLGDRLAA----LGLNGRTVTLKATYWNMKTI 300 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T+ H ++ I A VRL+G+ + L RQL Sbjct: 301 TRSHSGESVDHPYEIYQAGSALLAGIEKSPVRLIGVGLQNLSETYARQLTF 351 >UniRef50_D2A3T9 Putative uncharacterized protein GLEAN_14950 n=1 Tax=Tribolium castaneum RepID=D2A3T9_TRICA Length = 825 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 103/310 (33%), Positives = 159/310 (51%), Gaps = 35/310 (11%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR--------ERR------------GV--- 40 ++H+DMDCFF +V +R P LR +P+A+ +R ER GV Sbjct: 210 VMHIDMDCFFVSVGLRTRPELRGLPVAVTHARRAQLNPNKEREETVTLNMDRMPEGVELR 269 Query: 41 ----------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIF 90 +++ +Y ARK GV++ M G A KLCP + +P F+ YKE S + + Sbjct: 270 MIDGRSSMSEVASCSYEARKCGVKNGMFLGAAAKLCPQIKTIPYDFEGYKEVSMVLYKTL 329 Query: 91 SRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLA 149 + YT IE +S DE Y++V+D + + S A IR I S G + A Sbjct: 330 ASYTLNIEAVSCDEMYVEVSDLLKSYDLSVEDWANHIRDEIKTATGCPCSTGFGSNRLQA 389 Query: 150 KIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLV 209 ++A+ KP+G + + P +V ++L + LA +PGVG + +KL+++GL TCGDVQ L Sbjct: 390 RLATKKAKPDGSYYLKPEDVESYLAEIALADLPGVGYATLSKLKSLGLETCGDVQVASLG 449 Query: 210 MLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYP 268 +L + G K G L E+++GID + +N RKSV E +EC +E L Sbjct: 450 VLQRELGAKMGETLLEQAKGIDRKPLNYTHERKSVSAEINYGIRFKTINECYNFLESLGN 509 Query: 269 ELERRLAKVK 278 E+ RL ++K Sbjct: 510 EVWSRLNEIK 519 >UniRef50_B6Q7Y5 DNA-directed polymerase kappa, putative n=2 Tax=Leotiomyceta RepID=B6Q7Y5_PENMQ Length = 647 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 104/257 (40%), Positives = 148/257 (57%), Gaps = 18/257 (7%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++HVD D FFAAVE D P L+ +P+A+G +GV++T NY ARKFG RS M +A Sbjct: 117 VVHVDCDAFFAAVEELDRPELKHLPMAVG-----KGVLTTCNYVARKFGCRSGMAGFVAK 171 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS---AT 120 KLCP L +P ++ Y + IR IF Y E S+DEAYL++T +C + Sbjct: 172 KLCPDLICIPQNYEKYTAKAEEIRAIFVEYDPCFESASIDEAYLNIT--AYCDENDMDPQ 229 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE---VPAFLQTLP 177 Q++R I +E ++T SAG+A LAKIAS+ NKPNGQF I P+E + AF++ LP Sbjct: 230 EAVQQMRSRIADETKITVSAGIAANTKLAKIASNQNKPNGQFYI-PSEREAIMAFVKDLP 288 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNS 236 + K+ G+G+V +L A+G+ TCG + L + FG K L + G+ + Sbjct: 289 VRKVNGIGRVFERELRAIGIETCGQIYP-HRASLKRLFGEKAFHFLMQCHLGLGRTKIQP 347 Query: 237 --ERLRKSVGVERTMAE 251 + RKSVG E T +E Sbjct: 348 AVDYERKSVGTESTFSE 364 >UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A0M5X6_GRAFK Length = 406 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 157/300 (52%), Gaps = 4/300 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + IIH+D+D FF + E R++P L P+ +GG +R GV++ +Y R FGV S MP + Sbjct: 5 KSIIHLDLDTFFVSAERREHPELNKKPVIVGGLGDR-GVVAACSYETRNFGVHSGMPMKV 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP T++ G Y + S+ + E+ E S+DE Y D+T G Sbjct: 64 ARQLCPAATVIKGNASIYTKFSHEVTEVIRSKVPSFEKASVDEFYADLTGMDRFFG-INQ 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A+E++Q+I E +L S G++ K ++KIA+ KP Q +I P FL LP+ KI Sbjct: 123 FAKELQQSILKETRLPISFGLSQNKIVSKIATGEGKPYAQKIIDPGTEKNFLAPLPVNKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 P VG + KL +G+R +QK + +L GK GR +W+R+ GID + RK Sbjct: 183 PMVGNKTFQKLLNLGIRRIETIQKMPVEVLESVLGKNGRTIWKRAHGIDNPPIIPFHERK 242 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ERT D A + + L +L + + L + V++++ DFQ +++ Sbjct: 243 SISTERTFNRDTIDMVRLHATLVAMAESLAYQLR--RGNKLTSNVSVRIRYSDFQTYSKQ 300 >UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBQ9_9FIRM Length = 399 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 4/278 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAI-GGSRERRGVISTANYPARKFGVRSAMPT 59 +R I+H DM+ +A++E + NP L++ +A+ G R R G+I + A+ GV++ Sbjct: 2 LRTILHSDMNSCYASIEAKLNPKLKNKAMAVCGDPRNRHGIILAKSQEAKIMGVKTGEAI 61 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A CP+L L+P ++ Y E S R+I+ YT+R+EP LDE +LDV++S+ GS Sbjct: 62 WQAKIKCPNLILVPPHYEKYLEFSRKARKIYYSYTNRVEPFGLDECWLDVSESLKLFGSG 121 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA +IR+ + EL +T S GV+ K AK+ SD+ KP+ +I + L ++ Sbjct: 122 EEIANQIRERMKKELGITVSVGVSFNKVFAKLGSDLKKPDATTLIKKENFKEIVWPLDIS 181 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 I G+GK + KL +G+ + GD+ K D + G G LW+ + G+D+R V Sbjct: 182 SIIGIGKATKRKLNGIGIYSLGDLAKTDSDAIRGILGINGLYLWQYANGLDDRPVKDYSY 241 Query: 240 R---KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 R K++G T+ ED++ E I + L + +RL Sbjct: 242 REVIKTIGNSSTLVEDLYTNEEVYNIFQILSLNVSKRL 279 >UniRef50_UPI000186DDA3 terminal deoxycytidyl transferase rev1, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DDA3 Length = 752 Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 102/327 (31%), Positives = 161/327 (49%), Gaps = 44/327 (13%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV------------------------ 40 +H+DMDCFF +V +R+ P L+ P+A+ S+ G Sbjct: 214 MHIDMDCFFVSVALRNYPHLKGQPVAVTHSKINFGANNSLIETKLNLAVENLDSLKLKSD 273 Query: 41 --------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHI 86 I++ +Y ARK GV + M G ALKLCP+L + F YKE S + Sbjct: 274 EGVNQESKAFSMSEIASCSYEARKAGVCNGMYLGSALKLCPNLKTISYDFKGYKEVSFML 333 Query: 87 REIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTIFNELQLTASAGVAPV 145 + YT IEP+S DE Y+D T + + A +RQ I + + T+S G++ Sbjct: 334 YNTVAEYTLDIEPVSCDELYIDCTSVLSQIKINPIKFANILRQEIEEKTKCTSSVGISEN 393 Query: 146 KFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQK 205 K LA++A+ KPNG F +TP +V F++ + + +PG+G+ L+ + + TC D+Q Sbjct: 394 KLLARLATKKAKPNGVFFLTPEKVEEFIKKVSIYDVPGIGRNIGGILKKLSVETCEDLQN 453 Query: 206 CDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIE 264 L L+K G K G+ L++ +GID+R +N RKSV E + E E ++ Sbjct: 454 FSLSFLMKTLGSKIGKNLYDHCRGIDDRKINCNFERKSVSAEINYGIRFNDNEETEIFLK 513 Query: 265 RLYPELERRLAKVKPDLLIARQGVKLK 291 L E+ +RL +K +A + + LK Sbjct: 514 ELSQEVSKRLVNIK----MAGKNITLK 536 >UniRef50_A7REV5 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7REV5_NEMVE Length = 870 Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 158/315 (50%), Gaps = 39/315 (12%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAI-----GGSRERRGV---------------- 40 R I+H+DMDCFF +V +RD+P L P+A+ GG E + Sbjct: 284 RVIMHIDMDCFFVSVYVRDHPELDGKPVAVSRFNGGGGCELKSSHIVNYEMSFPTGFVAD 343 Query: 41 ----------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASN 84 I++ +Y AR+ GVR+ M G A KLCP +T +P FD Y++ S Sbjct: 344 LTSPDKSSAFFNSMSEIASCSYAARECGVRNGMFLGQARKLCPDITCVPYLFDKYRQVSQ 403 Query: 85 HIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAP 144 + EI Y+ IE +S DEA+LDVT S+ +AQ+IR I + ASAG++ Sbjct: 404 RLYEILVSYSHDIEAVSCDEAFLDVTHSLDAGTEPMALAQQIRAEIRAATRCNASAGISS 463 Query: 145 VKFLAKIASDMNKPNGQFVIT-PAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV 203 LA++ + + KP+GQF ++ +V F+ + +PGVG + KL MG+ TC D+ Sbjct: 464 NVLLARMCTRIAKPDGQFYLSREDDVIQFMASQKAKDLPGVGWALSKKLNDMGVETCADL 523 Query: 204 QKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAI 262 QK L L K FG K G L +G+D+R + ER RKSV E E Sbjct: 524 QKLSLQALQKEFGPKTGLSLHRSCRGVDDRPLRVERERKSVSAEINYGIRFTQDYEGVKF 583 Query: 263 IERLYPELERRLAKV 277 IE L E+ +RL +V Sbjct: 584 IEELAGEVHKRLREV 598 >UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DPO4_CLOTH Length = 399 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 146/277 (52%), Gaps = 4/277 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE +P LRD P+A+ GS E R G++ NY A+K+ V++ Sbjct: 3 RVILHCDLNNFYASVECLYHPELRDKPVAVCGSIEDRHGIVLAKNYAAKKYKVKTGETVW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L ++ Y + S + R+I+ YT R+E LDE +LDV++S G T Sbjct: 63 EAKNKCPGLVVVKANHSLYYKFSKYARQIYEYYTDRVESFGLDECWLDVSESTLLFGDGT 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I EL +T S GV+ K AK+ SDM KP+ VIT + + LP+ Sbjct: 123 KIANEIRERIKRELGVTVSVGVSYNKVFAKLGSDMKKPDAVTVITENDFKEKIWGLPVEA 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VG + KL M + T GD+ C L+++ GK+G LW + G D V + E Sbjct: 183 LLYVGDSTKKKLNNMAVFTIGDLANCHSEFLVRQLGKWGYTLWSFANGYDTSPVAKNDCE 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 KS+G T D+ + + +I L + RL Sbjct: 243 IPIKSIGNSLTAPRDLTNNEDVRILIYVLSESVGERL 279 >UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=DPO4_CLOK5 Length = 400 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 178/344 (51%), Gaps = 13/344 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I VDM+ FF + E +P + P A+ G + R G+I TANY ARKFGV++ M Sbjct: 3 RVIFLVDMNAFFISCESTRHPEIIGKPAAVAGDPKNRSGIILTANYEARKFGVKTTMVLH 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 LKLCP++ ++P YK+ S + I S+YT IE S+DEA+LD+T G + Sbjct: 63 KVLKLCPNIIIIPPDHCFYKQKSKEVMGILSKYTPVIEKNSIDEAWLDMTGCERIFGRSY 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 A+ I + I +EL L S G++ KFLAK+AS M KP G + ++ L LP+ Sbjct: 123 QTAECIMKHINSELGLDCSIGISENKFLAKMASQMKKPLGITKLWKKDIELKLWPLPVEF 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV--NSER 238 + G+GK +A KL M ++T G++ D L+K+ GK G + + + GID V +S + Sbjct: 183 MNGIGKQTARKLREMKIKTIGELANFDRRYLIKKLGKVGAEIHQFANGIDVSPVTPHSHK 242 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+G T+A DI + I+ L ++ K + + +K+ +FQ Sbjct: 243 DVKSIGKSITLAHDISDIESAKVILMELSDKVGMTARKYNKKGHTVQ--INIKYSNFQSI 300 Query: 299 TQEHVWPRLNKADLIATA-----RKTWDERRGGRGVRLVGLHVT 337 T++ I +A K W+ER VRL+G+ ++ Sbjct: 301 TRQRTITETYLVKEIYSAGIEMLEKNWNER---LPVRLLGISLS 341 >UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus RepID=C7RFL5_ANAPD Length = 413 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 156/279 (55%), Gaps = 5/279 (1%) Query: 1 MRKII-HVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMP 58 M+K+I H DM+ +A++E + NP L+ IP+A+ G+ + R G+I + A++ GV++ Sbjct: 1 MKKVILHSDMNACYASIEQKLNPKLKGIPMAVAGNPKNRNGIILAKSQEAKEAGVKTGEA 60 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A CP LT++P +D Y + S R+I+ YT+++EP LDE +LDVT S H G+ Sbjct: 61 LWQAFAKCPDLTIVPPHYDEYLKHSKLARKIYYEYTNQVEPFGLDECFLDVTGSAHLFGT 120 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 IA +IR+ + E+ +T S GV+ K AK+ SDM KP+ +I + LP+ Sbjct: 121 GEEIANKIRERMKEEVGITVSVGVSFCKIFAKLGSDMKKPDAVTIIGEDNFKEIVWPLPV 180 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 ++ GVG+ + KL +G+ T G++ D ++ G G LWE + G+D R V+ Sbjct: 181 REMVGVGRATERKLNGIGIFTLGELANTDPDLIRNLLGINGVYLWEYANGLDIRPVHDRD 240 Query: 239 LR---KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 + K++G T +D+ + E +++ L + +RL Sbjct: 241 HKEPVKTIGNSSTCRKDLVNNREVFNVLQELSFSVSKRL 279 >UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteriaceae RepID=C8WAH8_ATOPD Length = 444 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 112/342 (32%), Positives = 170/342 (49%), Gaps = 19/342 (5%) Query: 7 VDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLC 66 +D+D FFA+VE D+P R P+ +GGS +RGV+STA+Y ARK+GV SAM + A+KLC Sbjct: 28 LDLDAFFASVEQLDHPEWRGKPVIVGGSPHKRGVVSTASYEARKYGVHSAMASATAVKLC 87 Query: 67 PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEI 126 P PGR++ Y E S+ + T +E +S+DEA+ D+T + I + I Sbjct: 88 PQAIWTPGRYNRYSEMSSLVMGFLKDETPLVEQVSIDEAFFDITPGRFSKENPLEICKRI 147 Query: 127 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGK 186 ++ + L +T S G+ K +AKIAS+ KP G + P FL LP+ + G+G Sbjct: 148 QKKV-AALGITCSIGLGTNKTIAKIASEQEKPRGLTAVFPGTESHFLAPLPIEAMSGIGP 206 Query: 187 VSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE---RLRKSV 243 A L G+RT G++ + D L G + R+QG + +V+ R KSV Sbjct: 207 AMAKTLHQQGIRTLGELSRADSTYLTSFVGNTASKMILRAQGKEVSEVHEAAHPRDVKSV 266 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ------ 297 ERT D+ E E I + + RRL K + VK + Sbjct: 267 SNERTFETDLFDKQEIEEAIRHISGVVGRRLRKKQLQGFTVTLKVKASATESHTVQKRMS 326 Query: 298 --TTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVT 337 T EH++ + +L+ T W E G+ VRL+G+ ++ Sbjct: 327 IPTDDEHLFAEI-AVNLLPT---IWKE---GQPVRLLGVGIS 361 >UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2F2_ACICJ Length = 411 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 122/347 (35%), Positives = 175/347 (50%), Gaps = 15/347 (4%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I HVD D F+A+VE RD P L D P+ +GG RGV++ Y AR GVRSAMP A Sbjct: 37 IAHVDCDAFYASVEKRDRPELTDKPVIVGGGT--RGVVAACCYIARLSGVRSAMPMFKAR 94 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS--ATL 121 KLCP ++ Y A+ IR + + T ++PLS+DEA LD++ + H + A + Sbjct: 95 KLCPDAVVIAPEMRKYAAAAAEIRALMATLTPLVQPLSIDEAALDLSGTAALHRAPPAVV 154 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +++ RQ + E+ +T S G+A + LAK+A++ +KP G F + AE A L P+ + Sbjct: 155 LSRFARQ-VEAEVGVTVSIGLAANRLLAKLAAERDKPRG-FAVLGAEAAAVLAPEPVGIL 212 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVG A KL MG+ G + + R G+ G +L R++GID R ++ R K Sbjct: 213 PGVGPALARKLAGMGITRVGQLAALNDRAARARLGEDGPMLAARARGIDPRPIDPARATK 272 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ E T AEDI + ++ L +L RRL A G+ LK + T Sbjct: 273 SISAETTFAEDIDDAASLARVLFPLCEKLARRLRAEG----FAAAGLVLKLKTARFETHT 328 Query: 302 HVWPRLNK----ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 H RL A+ I A K R G RL+G+ L E Sbjct: 329 HAV-RLTAPTQLAETIFEAAKPVLMRAAGPRYRLIGIGAARLTDAAE 374 >UniRef50_C7N9E0 DNA-directed DNA polymerase n=5 Tax=Fusobacteriaceae RepID=C7N9E0_LEPBD Length = 363 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 113/357 (31%), Positives = 180/357 (50%), Gaps = 35/357 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R +H DMD FFAA+E RDN LR PIAIG GV++TA+Y ARKFG++SAMPT Sbjct: 5 RIYLHYDMDAFFAAIEQRDNKELRGKPIAIG-----HGVVTTASYEARKFGIKSAMPTVQ 59 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---- 117 A +LCP L ++ R D Y E I+ + + E S+DE Y+D+T+ + Sbjct: 60 AKRLCPSLIVVSLRKDIYFEEGRRIQGLIKNILKKCEFTSVDEGYIDITEFIQNKNIKLD 119 Query: 118 ------SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE-VP 170 ++ +Q I++ +LT S G+ K AKIASD+NKPNG F+ E Sbjct: 120 KRDEILKIERFIKKFKQYIYDNSKLTCSVGIGFSKISAKIASDINKPNGYFIFKNREHFL 179 Query: 171 AFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGI 229 ++ LA IPG+GK + L+ T + + + L++RFG G L+ +G+ Sbjct: 180 EYIYDKNLAIIPGIGKKTREVLKLFNTTTVFQLYEIEKNELIRRFGMSKGEYLYNTVRGL 239 Query: 230 DERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ--- 286 ++N++R R+S G E T + E I +Y EL+++ K+ L+ + Sbjct: 240 HFTEINTDRKRQSYGHEITFNRE-------ENDISIIYDELKKQSNKLSRKLIEKNEFAK 292 Query: 287 --GVKLKFDDF----QQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVT 337 VK+++ +F + T E+ NK + E++ +RL+G+ ++ Sbjct: 293 TVTVKIRYSNFVTHTRSRTLENATNNENKIYEATLENLNFFEKKD--EIRLIGVQLS 347 >UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiales RepID=A9KNH1_CLOPH Length = 400 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 109/360 (30%), Positives = 186/360 (51%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVE----MRDNPA---LRDIPIAIGGSRE-RRGVISTANYPARKFGV 53 R I HVD++ F + E + +P LR IP A+GG ++ R G++ + A+ FG+ Sbjct: 6 RLIFHVDVNSAFLSWESVHRLAADPESIDLRTIPSAVGGDKQSRHGIVLAKSTQAKSFGI 65 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 + P AL+ CP L ++P F+ Y S + + S YT + S+DEA+LD+TD+ Sbjct: 66 VTGEPLTHALQKCPSLVVVPPNFEVYTRYSERLMNLLSEYTPTLNQFSIDEAFLDMTDTY 125 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 H G+ IA +IR + EL T + G++ K LAK+ASD KPN + P+E+P + Sbjct: 126 HLFGAPMDIANQIRDRVLKELGFTVNIGISTNKLLAKMASDFKKPNLCHSLFPSEIPEKM 185 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ ++ VGK + AK +G+R+ D+ ++ +L G K+ ++ E + GIDE Sbjct: 186 WPLPVEELFFVGKSAKAKFGILGIRSIYDLAHTNVNILKTHLGNKYSALIHEYANGIDEE 245 Query: 233 DVN-SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 V ++ K G T+++D+ + + ++ L + RL ++ + V++K Sbjct: 246 PVEVTDPKAKGCGNSITLSQDVIDNAIAKQVLLALSETVGARLR--SSNVSCSCITVEIK 303 Query: 292 FDDFQQTTQEHVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + +FQ T + V P A + A + +DE +RL+G+ T LD Q+ L Sbjct: 304 YTNFQTYTHQTVLPHQTNTTATIYEAACRLFDEFWDNSPIRLLGIRTTKLDDTDFSQISL 363 >UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3H3_ERYRH Length = 406 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 150/279 (53%), Gaps = 2/279 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R I+H D+D FA +E+ NP+L D+P+ +GG +R G++ N A+ GV++A Sbjct: 4 RYILHCDIDYCFAQIEIMKNPSLADVPMCVGGDESKRHGIVLARNPIAKAKGVKTAETLN 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L ++P FD Y SN +++I+ YT ++E +DEA++D++DS+ G Sbjct: 64 EARRKCPGLVIVPPSFDDYLTISNQVKDIYREYTDKVESFGIDEAWVDISDSLLLFGKPG 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I E+ LT S G++ K AK+ SD+NKP+G ++ + V + + LP+ Sbjct: 124 DIATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDGLTILMESHVKSMIWPLPVQD 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER-L 239 + VG + L MG+RT GD+ D L GK G +L + G D +VN Sbjct: 184 LLYVGPSTQKSLNKMGIRTIGDLACADENQLHTHIGKMGSLLKSFANGDDTSEVNPHTDP 243 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 KSVG T +D+ E ++ L + R ++ Sbjct: 244 AKSVGNGMTTPQDLVSIEEVRRVLFVLAESVSSRCRNIE 282 >UniRef50_A9V4K7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V4K7_MONBE Length = 1412 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 111/326 (34%), Positives = 157/326 (48%), Gaps = 38/326 (11%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H+D+D FF ++ +R+ L+D P+AI S RE IS+ NYPAR+FG+R+ M Sbjct: 321 RVIVHIDLDAFFVSIALRERQELQDQPVAIAHSGREGSSEISSCNYPARQFGIRNGMSMR 380 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH---- 116 AL CPHL LP FD YK AS + + T RI+ +S+DEAYLD+T V Sbjct: 381 RALAACPHLQTLPYEFDKYKLASQAFYRLLTARTLRIQAVSMDEAYLDLTGLVRPDYSPH 440 Query: 117 ------------------------------GSATLIAQEIRQTIFNELQLTASAGVAPVK 146 SAT E+R I EL + ASAG+ P Sbjct: 441 LWQAVQQRQHEGHPPLSPAPLQEASLPVPTQSATEFVAELRTAIAEELGIAASAGIGPNV 500 Query: 147 FLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKC 206 LA++ + + KPNG + A V F+ L +PGVG +A +L MG+ +C D++ Sbjct: 501 LLARLCTRLAKPNGLYSYAEANVERFIDQTALKDLPGVGWCTAGRLTTMGIASCADLRAL 560 Query: 207 DLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIER 265 L L FG K G+ L+ +GID + KSV VE T ++ + + Sbjct: 561 PLDRLQADFGHKNGQALYNACRGIDPSPLKDNAPPKSVSVEITWGVRFDKDAQVDTFVSN 620 Query: 266 LYPELERRLAKVKPDLLIARQGVKLK 291 L E+ RL V L R +K+K Sbjct: 621 LCREVCSRLEAV--GQLATRVTLKIK 644 >UniRef50_B9XRF0 DNA polymerase III, alpha subunit n=1 Tax=bacterium Ellin514 RepID=B9XRF0_9BACT Length = 1420 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 163/300 (54%), Gaps = 14/300 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+D D FFA+VE + LR +A+GG E+RG+I++A+Y ARKFGV + MPT Sbjct: 11 RAIVHLDADAFFASVEQAADARLRGKAMAVGG--EKRGIIASASYEARKFGVYTPMPTVR 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP L ++PG F+ Y+ S + +T +E S+DE Y D+T + S Sbjct: 69 ARKLCPKLIIVPGDFEKYERFSRWMFSYAYDFTPEVEISSIDEGYFDLTGA---RKSPLE 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP--AEVPAFLQTLPLA 179 IA+ IR I L++T S G+A K +++IAS +NKP F P E+P FL LP Sbjct: 126 IAEIIRGAIRGALKITVSEGIACNKLVSQIASKLNKP-AAFKQVPLGGEIP-FLHPLPNK 183 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERD-VNSER 238 +PGVG +A KL A GL G + K L +L G R L E + GIDER + Sbjct: 184 WLPGVGPTTATKLNAAGLIRIGHIAKTPLDLLQLLMGNMARSLKEFADGIDERPLIQESE 243 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQ 297 KS G + T D EA ++R+ L +A+V+ D R VK++++D + Sbjct: 244 PAKSYGHQETFGVDQTDEEFIEATLKRMADSL---MAQVRADDKTIRTLTVKVRYNDMAE 300 >UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomycetales RepID=C5BW73_BEUC1 Length = 415 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 157/300 (52%), Gaps = 7/300 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA+VE+ P LR P+ +GG E RGV+ A Y AR FGV SAMP A Sbjct: 23 ILHVDMDAFFASVELIRAPDLRGRPVIVGG--EHRGVVLAATYEARAFGVHSAMPMTRAR 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 LCP ++P Y+E S + + + T +E +S+DEA+LDV+ + GS IA Sbjct: 81 ALCPQAVVIPPDHARYEEVSRVVMGLLADVTPVLEQVSVDEAFLDVSGARRRLGSPVAIA 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR I Q+ AS GVA KFLAK+AS KP+G ++ A FL +LP+ + G Sbjct: 141 TAIRSRIREVAQIPASVGVASTKFLAKLASQTAKPDGLLLVPEAASVPFLHSLPVGALWG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRI-LWERSQGIDERDVNSERLRKS 242 VG+ +AA+L G+ + + +L +R G+ G L++ + D R V R+ KS Sbjct: 201 VGERTAAQLREWGIESVEQLAHTPPDVLQRRLGRAGGARLYDLAWNRDPRPVTVARVEKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQE 301 + E T D+ +E + RRL + +AR +K++ DF T+ Sbjct: 261 ISSEHTFVTDVTDAAELGRTLLEQAHRCARRLRRGG---FLARGVTIKVRMSDFTTLTRS 317 >UniRef50_Q4Q8C4 DNA polymerase kappa, putative (Dna polymerase iv, putative) n=3 Tax=Leishmania RepID=Q4Q8C4_LEIMA Length = 598 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 96/256 (37%), Positives = 144/256 (56%), Gaps = 10/256 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+ IH+DMD F+AAVE + P+LR P +G + ++ST NY AR++GVRS MP + Sbjct: 143 RRYIHIDMDMFYAAVEEKKTPSLRGKPFGVGSQQ----MLSTTNYIARQYGVRSGMPGFI 198 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG--SA 119 KLCP L ++P F AY+ + + I SRY ++ + LDE +DVT + SA Sbjct: 199 GKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTMDVTKYLQEFPAVSA 258 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQF---VITPAEVPAFLQTL 176 + IA + R +F + QLT+S G+ P LAKIAS++NKPNGQ ++T EV +++ + Sbjct: 259 SDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNGQHEITLLTREEVINYVRDI 318 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGD-VQKCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 PL KIPG+G L A+ + TCG ++ L+ L R L + + Sbjct: 319 PLRKIPGIGYAQEMTLGALHIHTCGGLLEHKYLLAYLFREKTLAHYLSVGLGLAETFSLR 378 Query: 236 SERLRKSVGVERTMAE 251 + R+SVG E + +E Sbjct: 379 KHQARQSVGKETSFSE 394 >UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA62_9FIRM Length = 413 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/359 (30%), Positives = 177/359 (49%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPA-------LRDIPIAIGGSR-ERRGVISTANYPARKFGV 53 R I H+D++ F + + N LR IP A+GG +R+GV+ + A+K+GV Sbjct: 7 RIIFHIDVNSAFLSWQAAYNKKMGNKEVDLRSIPSAVGGDEAKRKGVVLAKSQKAKKYGV 66 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 R+ A K CP+L ++ F Y+ SN + ++ S Y+ IE S+DE +LD T S Sbjct: 67 RTGESLFEARKKCPNLLIVKPNFKIYRMYSNKLFDLLSEYSDTIERYSIDECFLDYTSSQ 126 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 G A EI++ I EL T + G++ K LAK+A D+ KP+ + P E+ + Sbjct: 127 KLFGEPIKAAYEIKERIKRELGFTVNIGISNNKLLAKMAGDLKKPDKVITLFPEEIEEKM 186 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDER 232 L + ++ VG+ + KL ++G++T GD+ KC + L+ F K G +L+ S GIDE Sbjct: 187 LPLTINELFMVGRKTKEKLNSLGIKTIGDLNKCSMGFLISNFKKAQGTMLYNYSHGIDES 246 Query: 233 DVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 +V R KS+G T+ D +E + + L + RL + DL V +K Sbjct: 247 EVEISRQTKSIGNSTTLKNDTTDINEVKKVFLALSDSVGTRLR--RKDLKGNTITVTIKN 304 Query: 293 DDFQQTTQEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + F + + P + + A K ++E +RL+G+ V L+ QL L Sbjct: 305 NLFHSYSHQRTLPYFTNSTNTIYEQAFKLFNEFWNNDAIRLLGISVGGLNKDEVNQLSL 363 >UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3I3_JONDD Length = 413 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 175/355 (49%), Gaps = 12/355 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++HVDMD F+A+VE+ P LR P+ + G R V+ A+Y AR+ GVRSAMPT A Sbjct: 22 NVMHVDMDAFYASVEIAQRPELRGQPVIVAGGE--RSVVLAASYEARELGVRSAMPTQRA 79 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L PH + R Y S + + T +E +S+DEAYLDV+ G+ + Sbjct: 80 RLLAPHAVWVAPRHHEYARISRSVMDYLDTITPWVEQVSIDEAYLDVSGIRGPQGTLSAR 139 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 AQE+R + +T S GVA KFLAK+ S KP+G V+ + FL LP+ + Sbjct: 140 AQELRAQVKAHHGVTCSVGVAANKFLAKLCSTQAKPDGLLVLPRGQEQEFLNLLPIGALM 199 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRK 241 G+G S +L+ GL T DV + ++ G G L ++GID+R V R+ K Sbjct: 200 GIGDKSERRLKQHGLHTIRDVAALEPSYVVALLGATLGNRLIHLARGIDDRPVTPTRVEK 259 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQ 300 SVG E T A+D A + L + RL + L+AR VK++ +F T+ Sbjct: 260 SVGAEHTFAQDEGSREVLRATVRSLADTVTSRL---RSRGLLARTISVKIRDVNFHTITR 316 Query: 301 EHVWPRLNKADLIATARKTWD--ERR--GGRGVRLVGLHVTLLDPQMERQLVLGL 351 HV L + W +R+ G+ RL+G+ L P+ + L L L Sbjct: 317 -HVTLHSPSQSLHVVFSQAWTLVDRQLLPGQRARLLGVRAEQLVPEEGQPLTLTL 370 >UniRef50_B9LT67 UMUC domain protein DNA-repair protein n=3 Tax=Halobacteriaceae RepID=B9LT67_HALLT Length = 476 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 185/386 (47%), Gaps = 41/386 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIG---GSRERRGVISTANYPARKFGVRSAMP 58 R + HVDMDCF+A+ E P L D P+ +G + E G ++TA+Y AR FGV SAMP Sbjct: 19 RIVFHVDMDCFYASCERLRRPELADEPLVVGMGYEAGEAIGAVATASYEARAFGVESAMP 78 Query: 59 TGMALKLCPHLT-----------------LLPGRFDAYKEASNHIREIFSRYTSRIEPLS 101 AL L P LP D YKE ++ ++ + + +S Sbjct: 79 ISEALDLLPRRVNADPDDPDAPDPDEAGRYLPVDLDFYKEVASDVKTVLRDCADVLREVS 138 Query: 102 LDEAYLDVTDSVH---CHGSATLI------------AQEIRQTIFNELQLTASAGVAPVK 146 +DEAYLDVTD G +T A+ I++ I E + AS GVAP Sbjct: 139 VDEAYLDVTDRTAWDAAGGESTATGPAETRTLAEGYARHIKERIEREAGVPASVGVAPNM 198 Query: 147 FLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKC 206 AKIASD +KP+G V+ P EV +FL +LP A+I GVG V+ L +G+ T GD+ Sbjct: 199 STAKIASDADKPDGLVVVPPGEVESFLASLPTAEIHGVGPVTERTLAELGIETAGDLAAA 258 Query: 207 DLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERL 266 D L G GR L+ R++G D+R+V L KS+ E +++ + E + L Sbjct: 259 DPDRLADELGDRGRELYRRARGDDDREVTPTGLPKSLSRESSLSATADEERKRE-TVRAL 317 Query: 267 YPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPR-LNKADLI-ATARKTWDERR 324 ++ RR + L G+K ++ T+ P ++ DL+ + A E Sbjct: 318 AADVARRARERG--CLYRTIGIKAVEPPYEVNTRARSLPGPVDDPDLVESVALDLLGEFA 375 Query: 325 GGRGVRLVGLHVTLLDPQMERQLVLG 350 G R VR +G+ V+ LD Q LG Sbjct: 376 GDR-VRKLGVRVSKLDFAESDQATLG 400 >UniRef50_D2R9L6 ImpB/MucB/SamB family protein n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9L6_GARVA Length = 409 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 157/297 (52%), Gaps = 9/297 (3%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD F+A++E+ +P L+ P+ IG R V+S A+Y AR +GV SAMP A LCP Sbjct: 1 MDAFYASLEVARHPELKGKPLIIGTGN--RAVVSAASYEARAYGVNSAMPVVKARNLCPQ 58 Query: 69 LTLLPGRFDAYKEASNHIRE-IFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIR 127 LP Y S I E IF T+++E +S+DE Y++V ++ S I +R Sbjct: 59 GIFLPVDIPYYSSVSKSIFENIFLHITNQVEKVSVDECYMNVKSALLQWKSPVNIGTWVR 118 Query: 128 QTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKV 187 + +F + +T S G+A K +AK+AS KPNG +I F+ +PL IPG+G Sbjct: 119 KEVFEKYHITCSVGIASNKLIAKMASTNAKPNGMLLIPQKCNEDFVSIMPLRAIPGIGSS 178 Query: 188 SAAKLEAMGLRTCGDVQKCDLVMLLKRFGK--FGRILWERSQGIDERDVNSERLRKSVGV 245 KLE GL T ++ D L + G R++++ +GIDER V + KS+G Sbjct: 179 LIHKLEDWGLSTVASLKNVDEATLTRITGSQILARMIYQSVRGIDERTVTAHAPEKSIGT 238 Query: 246 ERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQE 301 ERT+ D + + + ++++ E+ ++L K L+AR +KL+F D T+ Sbjct: 239 ERTLDTDTTNENAVKQLLQQCCSEVTQQLRNRK---LMARTITLKLRFGDLHYVTRS 292 >UniRef50_D0A851 DNA polymerase kappa, putative n=17 Tax=Trypanosoma brucei RepID=D0A851_TRYBG Length = 572 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 114/345 (33%), Positives = 180/345 (52%), Gaps = 45/345 (13%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 IH+DMD F+AAVE++ +P IP+AIG + TANY AR G+R MP +ALK Sbjct: 136 IHLDMDMFYAAVEIKKHPEYATIPLAIGTMTR----LQTANYIARGRGIRQGMPGFLALK 191 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSATL-- 121 +CP+L +LP FDAY E SN +R I + Y + LDE L+V+ + G+ T Sbjct: 192 ICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYIVVGLDELALEVSAYIERFEGTKTAED 251 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI---TPAEVPAFLQTLPL 178 +A E+R +F E +LTASAG+ P LAKIAS++NKPNGQ + T +V +++ L L Sbjct: 252 VASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVMTYVRDLGL 311 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLK----RF---GKFGRILW------ 223 +PGVGKV+ A L+ +G+ T D+ ++ +L +L RF G + W Sbjct: 312 RSVPGVGKVTEALLKGLGITTLSDIYNRRVELCYILHNNLFRFLLGASIGIMQWPDAATA 371 Query: 224 ------ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKV 277 E + G + ++SER + + M E + + + Y E+ Sbjct: 372 ANTENCEGATGEQRKAISSERSITTPRTKEGMQEMV------DTVFNGAYEEMR------ 419 Query: 278 KPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDE 322 K +++ R + +++ ++ Q++ + +D AT R+ DE Sbjct: 420 KSEIMCRRISLTIRWASYRY--QQYTKSLIQHSDDSATLRRAVDE 462 >UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA41_MICLC Length = 431 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 169/341 (49%), Gaps = 9/341 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FF +VE+R+ P L P A+ R V+ +A+Y AR +GVRSAMP A Sbjct: 15 ILHVDMDAFFLSVELREQPDLEGRPAAVAAP-SGRSVVLSASYAARAYGVRSAMPLAHAR 73 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 LCP L ++P R Y+ S + + + T +E LS+DEA+LDV + G I Sbjct: 74 ALCPPLVVIPPRQQLYRAVSAEVMAVLADVTPVMEQLSVDEAFLDVAGARRRLGPPEHIG 133 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR+ + + L L + G + VKF+AK AS KP+G ++ P FL LP+ ++ G Sbjct: 134 HLIRERVRSALGLPCTVGGSAVKFVAKTASTAAKPDGLLIVPPQRTLDFLHPLPVGRLWG 193 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG +A +L G+ T GD+ + D L FG GR ++GID R V +S+ Sbjct: 194 VGPKAAERLARRGVATIGDLARVDPARLEASFGAAGREWASLARGIDPRPVAPRPAARSI 253 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDD--FQQTTQ 300 G + T D + + RL R A+++ + + A V+LK D + T Sbjct: 254 GADHTFDVDPVDVVGVDPEVLRL---CHRVAARLRAEQVTAGAVTVRLKAPDGSVRSRTA 310 Query: 301 EHVWPRLNKADLIATARKTWDERRGGR--GVRLVGLHVTLL 339 P DL+ AR+ E R VRLVG+ L Sbjct: 311 RLARPTATGHDLLGPARRLVRELHAERPHPVRLVGVRAERL 351 >UniRef50_Q47E66 UMUC-like DNA-repair protein n=2 Tax=Betaproteobacteria RepID=Q47E66_DECAR Length = 387 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 103/322 (31%), Positives = 167/322 (51%), Gaps = 25/322 (7%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS------------------RER--RGVI 41 R+I H+DMD FFA+VE+ + P LR P+ +GG RE RGV+ Sbjct: 12 RRIAHLDMDAFFASVELLNYPELRGQPVVVGGRNVNQPISQPDGTKRFGRLREYVGRGVV 71 Query: 42 STANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLS 101 +T+ Y AR FGV S M + ++ P LLP FDAY S + + IE Sbjct: 72 TTSTYEARAFGVFSGMGLMKSAEMAPGTILLPANFDAYLNYSRRFKAAVATIAPLIEDRG 131 Query: 102 LDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQ 161 +DE Y+D++D + +A+ I+Q +F+ LT S G+ P K L+KI SD+ KP+G Sbjct: 132 IDEIYIDLSD---IDEESLPLARRIKQAVFDATGLTCSIGITPNKLLSKICSDLQKPDGI 188 Query: 162 FVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGR 220 ++ A++ + + L KI G+G + +LE +G++T G + + +LL FG+ G+ Sbjct: 189 TILGIADIESRIWPLAAKKINGIGPKANERLEKLGIQTIGQLAATPVELLLNHFGRSTGQ 248 Query: 221 ILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPD 280 + + + G D+R V + R KS+ E T D+H + + E R +K Sbjct: 249 WMHQVAHGRDDRPVKTSRETKSISRESTFQRDLHAKQDRSELSEIFTGICLRVADDLKRK 308 Query: 281 LLIARQ-GVKLKFDDFQQTTQE 301 L+A+ G+K+++ DFQ T++ Sbjct: 309 GLVAKTIGIKVRYADFQAVTRD 330 >UniRef50_A7SBP1 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SBP1_NEMVE Length = 403 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 151/289 (52%), Gaps = 43/289 (14%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+D+DCF+A VEM NP LRD P+ + ++ ++ T NY AR G++ + Sbjct: 3 RVIVHIDIDCFYAQVEMIRNPCLRDRPVGVS----QKHILVTCNYVARAMGLKKLISLAE 58 Query: 62 ALKLCPHLTLLPGR-FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------ 114 A K CP L ++ G Y+E S+ + ++ R+ R+E L LDE Y+DV++ V Sbjct: 59 AKKKCPDLVIINGEDLTKYREFSSRVTKLLRRFALRVERLGLDENYVDVSELVQERMKHA 118 Query: 115 ----------------------------CHGSATL---IAQEIRQTIFNELQLTASAGVA 143 CH T+ IA E+R+ IF+E+ LT AG+A Sbjct: 119 PRGSYIAVGCIYGDNILKGSSNEVCPCGCHERLTVGSVIASELRKAIFDEIGLTTCAGIA 178 Query: 144 PVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV 203 K LAKIA + NKPN Q ++ V + LP+ K+PG+G+ + A+L ++G+ T ++ Sbjct: 179 HNKLLAKIAGEQNKPNKQTLLYTERVEGLMGLLPVRKVPGIGRSTCARLGSLGITTIAEL 238 Query: 204 QKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAE 251 Q+C LL F + RIL S G D+ V+++ + KS+ E + + Sbjct: 239 QECSKKALLNEFNSQEVRILHALSHGADDSQVSTDSMPKSISEEDSYSN 287 >UniRef50_B3RS03 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RS03_TRIAD Length = 653 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 107/310 (34%), Positives = 156/310 (50%), Gaps = 66/310 (21%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD F+AA+E+RDNP+L D P+A+GG+ G++ T+NY AR++GVR+AMP + Sbjct: 86 RFIVHVDMDAFYAAIEIRDNPSLADKPMAVGGT----GMMLTSNYIARRYGVRAAMPGFI 141 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------- 114 +LCP L + Y +AS +R I + Y +SLDEAY+D+T+ + Sbjct: 142 GKRLCPDLVFVKPNSAKYAQASKEVRAILAEYDPNFASVSLDEAYMDLTEYLEGRKCTFP 201 Query: 115 -CHGSATLIAQEIRQ---TIFNEL------------------------------------ 134 H T+ Q++ + I NE+ Sbjct: 202 SSHVEFTVPQQDLTEDMLKILNEVAPPTVDGVDSYNNCSSNSSIRKVSFGHTIEDVMREI 261 Query: 135 --------QLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPLAKIPGV 184 +LTASAG+ P K LAKI SD KPNGQF + T ++ F++ LP KI G+ Sbjct: 262 RFKINRKTKLTASAGIGPNKMLAKICSDWKKPNGQFKVEFTRDKIIEFMRQLPTRKISGI 321 Query: 185 GKVSAAKLEAMGLRTCGDV-QKCDLVMLLKRFGKFG-RILWERSQGIDERDVNSERL-RK 241 GKVS L + + C ++ K DL+ LL F + + GI +V+S+ RK Sbjct: 322 GKVSERLLNEIEISNCKELYDKRDLIYLL--FSNVSTKFFLAVAMGIGSNEVSSKNYQRK 379 Query: 242 SVGVERTMAE 251 S+ ERT E Sbjct: 380 SISCERTFGE 389 >UniRef50_Q2L7B2 REV1 n=7 Tax=Sordariomycetes RepID=Q2L7B2_NEUCR Length = 1343 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 142/291 (48%), Gaps = 18/291 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF AV ++ P RD P + + I++ NYPARKFGV++ M Sbjct: 366 RYIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIASCNYPARKFGVKNGMWMKH 425 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP L +LP F Y+EAS + ++ +S+DEA +DVTD V ++ Sbjct: 426 ALELCPDLKILPYDFPGYEEASRQFYDAILGIGGVVQSVSIDEALIDVTDIVMAEAGSSG 485 Query: 122 I-----------------AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 I A ++R I + S G+ LAK+A KP GQ+ I Sbjct: 486 IGISEGSIWREQEKVDQMASKLRDRIKEQTDCHVSVGIGANILLAKVALRKAKPAGQYQI 545 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P E L L + +PGV AKLE +G++ D+++ L+ G K G LW Sbjct: 546 KPEEALDLLGELNVEDLPGVAHSIGAKLEELGIKFVKDIRQTSKERLISALGPKTGEKLW 605 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 E S+GID +V + +RKSV E + E E + L ELERRL Sbjct: 606 EYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQEEAEEFVRSLSQELERRL 656 >UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q0AWD6_SYNWW Length = 419 Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 147/277 (53%), Gaps = 4/277 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE P +R+ +A+ G R G++ NY A++ G+++ Sbjct: 3 RVILHSDLNNFYASVECLHRPEIRNKAVAVCGDPAARHGIVLAKNYLAKESGIQTGEVIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L ++P + Y + S R I++ YT ++E LDEA+LDVT S+H GS Sbjct: 63 QAQQKCPELVVVPPNYPLYLKFSRLARSIYASYTDQVEAFGLDEAWLDVTGSIHIFGSGI 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A EIR+ I EL ++AS GV+ K AK+ SDM KP+ +I+ LP + Sbjct: 123 EMADEIRERIKLELGVSASVGVSYNKIFAKLGSDMKKPDATTIISKDNFKQTAWPLPASD 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VG+ + K G+ T GD+ + D ++L R GK+G +LW + G D V E Sbjct: 183 LLYVGRATCRKFARWGISTIGDIAESDPLVLKARLGKWGEVLWSFANGYDRSPVVAMGEE 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 + KSVG T D+ + + II L + RL Sbjct: 243 SIIKSVGNSITTPRDLENNEDVLLIIYALSESVAARL 279 >UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D1Q6_9CLOT Length = 435 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/367 (31%), Positives = 187/367 (50%), Gaps = 28/367 (7%) Query: 2 RKIIHVDMDCFFAAVE----MRDNPA---LRDIPIAIGG-SRERRGVISTANYPARKFGV 53 R I H+D++ F + E + +P LR IP A+GG ++ R G++ + A+++GV Sbjct: 21 RLIFHIDVNSAFLSWESVYRLSADPQALDLRTIPSAVGGDAKSRHGIVLAKSTLAKQYGV 80 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 + P AL+ CP LT++P RFD Y + S+ + E+ YT E S+DE +LD+T ++ Sbjct: 81 TTGEPLAQALRKCPQLTVVPSRFDYYIKCSHRMMELLETYTPDHEKFSIDEIFLDMTQTI 140 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 H G A IR+ I +EL T + GVAP K LAK+ASD KP+ + E+P+ L Sbjct: 141 HLFGQPLEAANRIRERIRDELGFTVNIGVAPNKLLAKMASDFEKPDKCHTLFAHEIPSKL 200 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ ++ VG + K+E +G+ T G + CDL +L G K+ + + G+D Sbjct: 201 WPLPIRELFFVGGAAQRKMENLGIHTIGQLASCDLAVLKAHLGEKYAVTIRGYANGVDVD 260 Query: 233 DV-NSERLRKSVGVERTMAEDIHHW-SECEAIIERLYPELERRLAKVKPDLLIARQGVKL 290 V + + K G T++ D+ + + C+ I+ E A+++ D ++ R V + Sbjct: 261 PVAEKDPINKCYGNSVTLSRDVSDYETACQVILSL----CETVGARLRADRVLCRN-VCV 315 Query: 291 KFDDFQQTTQEHVW----PRLNKADLIATA----RKTWDERRGGRGVRLVGLHVTLLDPQ 342 + D++ TQ H P + + L A R+ WD VRL+G+ +D Sbjct: 316 ELKDWEFHTQSHQMILPEPTDSTSALYGYACRLLREFWDR----TPVRLIGVRAGKIDDD 371 Query: 343 MERQLVL 349 QL L Sbjct: 372 SFSQLSL 378 >UniRef50_Q5Q9G7 Polymerase kappa isoform 2 n=34 Tax=Deuterostomia RepID=Q5Q9G7_HUMAN Length = 489 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 118/360 (32%), Positives = 168/360 (46%), Gaps = 95/360 (26%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD F+AAVEMRDNP L+D PIA+G ++ST+NY AR+FGVR+AMP +A Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGS----MSMLSTSNYHARRFGVRAAMPGFIAK 158 Query: 64 KLCPHLTLLPGRFD---------------------------AYKEASNHIRE-------- 88 +LCP L ++P FD AY + H+ E Sbjct: 159 RLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDK 218 Query: 89 ---------------------IFSRYTSRIEPLSLDEAYLDVT----------------- 110 S + I PL +E+ DV Sbjct: 219 RRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQ 278 Query: 111 ---DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA 167 +SV SA + +EIR I + LTASAG+AP LAK+ SD NKPNGQ+ I P Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338 Query: 168 E--VPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV-QKCDLVMLLKRFGKFGRILWE 224 V F++ LP+ K+ G+GKV+ L+A+G+ TC ++ Q+ L+ LL F W Sbjct: 339 RQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLL-----FSETSWH 393 Query: 225 R----SQGIDERDVNSERLRKSVGVERTMAE---DIHHWSECEAIIERLYPELERRLAKV 277 S G+ + + RKS+ VERT +E +S C+ + L +L++ KV Sbjct: 394 YFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKV 453 >UniRef50_Q9UBT6 DNA polymerase kappa n=23 Tax=Tetrapoda RepID=POLK_HUMAN Length = 870 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 119/356 (33%), Positives = 168/356 (47%), Gaps = 93/356 (26%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD F+AAVEMRDNP L+D PIA+G ++ST+NY AR+FGVR+AMP +A Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGS----MSMLSTSNYHARRFGVRAAMPGFIAK 158 Query: 64 KLCPHLTLLPGRFD---------------------------AYKEASNHIRE-------- 88 +LCP L ++P FD AY + H+ E Sbjct: 159 RLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDK 218 Query: 89 ---------------------IFSRYTSRIEPLSLDEAYLDVT----------------- 110 S + I PL +E+ DV Sbjct: 219 RRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQ 278 Query: 111 ---DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA 167 +SV SA + +EIR I + LTASAG+AP LAK+ SD NKPNGQ+ I P Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338 Query: 168 E--VPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV-QKCDLVMLLKRFGKFGRILWE 224 V F++ LP+ K+ G+GKV+ L+A+G+ TC ++ Q+ L+ LL F W Sbjct: 339 RQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLL-----FSETSWH 393 Query: 225 R----SQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAK 276 S G+ + + RKS+ VERT +E I+ E ++ + L EL + L K Sbjct: 394 YFLHISLGLGSTHLTRDGERKSMSVERTFSE-INKAEEQYSLCQELCSELAQDLQK 448 >UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF6_9FIRM Length = 412 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 4/275 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDM+ F+ + E+ D P L+ P+A+GG + R G+I A+KFGV + P A Sbjct: 3 ILHVDMNSFYVSCELIDKPNLKSQPVAVGGDEKLRHGIILAKTPMAKKFGVLTGEPIWQA 62 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 K CP+L + P ++ Y S ++I+ YT+++EP +DE +LD+T S GS I Sbjct: 63 KKKCPNLLIFPPNYEKYIRISKAAQKIYYSYTNQVEPYGMDECFLDITGSKKLFGSPEKI 122 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A EI++ I EL++T S G++ K AK+ASDM KP+ I + L + + Sbjct: 123 AFEIKERIKTELKVTVSVGLSFNKVFAKLASDMRKPDYCTFIYKENYKKIVWPLKVQDMI 182 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDE---RDVNSERL 239 +G + KL + ++T GD+ + D +L K G G ++ + G+D +D Sbjct: 183 MIGPQTTKKLNKINIKTLGDLAEADPEILRKNLGINGIKIYNWANGMDNTRVKDYYQIIP 242 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 KS+G T ED+ ++ E A+I++L ++ +RL Sbjct: 243 IKSIGRSITCKEDLLNYEEVRAVIQKLCEDISKRL 277 >UniRef50_B8P0X5 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R RepID=B8P0X5_POSPM Length = 527 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 177/353 (50%), Gaps = 55/353 (15%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+A+VE+ D+P+L A +Y ARK+GVRS MP+ +A Sbjct: 92 IVHVDMDAFYASVELLDDPSLEGKAFA--------------SYEARKYGVRSGMPSFIAK 137 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---SAT 120 KLCP L L+ F Y E S + IF RY + DE YL++T +C +A Sbjct: 138 KLCPDLILVENHFHRYMELSKKVMNIFRRYDPSMCAAGCDEGYLNIT--AYCRDQQLTAD 195 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPL 178 +++R+T++ E +LT SAG+AP K NKPNGQF + P + AF++ L + Sbjct: 196 ECVRQMRETVYQETKLTVSAGIAPNK---------NKPNGQFTLDFEPRAIKAFMRNLSI 246 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLL--KRFGKFGRILWERSQGIDERDVN- 235 KIPGVG+V+ L+++G++TCGD+ +V+ L K FG + L + GI V Sbjct: 247 RKIPGVGRVNERLLDSIGIKTCGDIYTHRVVVSLMDKEFGL--QFLLQTYLGIASNVVQP 304 Query: 236 -SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIA-----RQGVK 289 RKS+G ERT H +AI+ + LE A+++ D+ +K Sbjct: 305 GQREERKSIGAERT----FHPLGNQDAILCK----LEEVAAELESDMTSGGWTGKTVTLK 356 Query: 290 LKFDDFQQTTQEHV---WPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL 339 K D +Q T+ W K DL A + +RL+GL VT L Sbjct: 357 FKLDTYQVFTRAKSFDRWVSTKKEDLYAVKLLMPE---MPLTLRLIGLRVTKL 406 >UniRef50_Q29DW0 GA11465 n=3 Tax=Drosophila RepID=Q29DW0_DROPS Length = 954 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 104/325 (32%), Positives = 156/325 (48%), Gaps = 50/325 (15%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAI----GGS------------------------- 34 I+H+DMDCFF +V +R +P R +PIA+ GG+ Sbjct: 273 IMHIDMDCFFVSVGLRSHPEWRGLPIAVTHSKGGNAATDVPVHPQADRQAELKLFAERFE 332 Query: 35 ----------RERRGV--------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRF 76 + R G I++ +Y AR G+R+ M G ALKLCP L +P F Sbjct: 333 HQLHDNIRADKVRSGFDKKMSLSEIASCSYEARAKGIRNGMFVGQALKLCPELKTIPYDF 392 Query: 77 DAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSATLIAQEIRQTIFNELQ 135 + YKE + + + ++YT IE +S DE ++D+TD V +R+ + N+ Sbjct: 393 EGYKEVAFALYDTVAQYTLNIEAVSCDEMFVDLTDLVEDLQVDVMSFVAHLREEVRNKTG 452 Query: 136 LTASAGVAPVKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAKIPGVGKVSAAKLEA 194 SAGV K LA++A+ KP+GQ+++ P +V ++ L +PGVG KLE Sbjct: 453 CPCSAGVGTNKLLARMATKRAKPDGQYLLGPGTDVLGYMAPTALETLPGVGSSLRHKLEQ 512 Query: 195 MGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDI 253 GLR C DVQ+ L L G K L+E +GID R + E+ RK+V E Sbjct: 513 AGLRNCADVQRTSLQTLESVVGKKLALTLYENCRGIDTRPLVYEQKRKTVSAEVNYGIRF 572 Query: 254 HHWSECEAIIERLYPELERRLAKVK 278 + +ECE + +L E+ RL +K Sbjct: 573 TNTTECETFLRQLSAEVTTRLTDIK 597 >UniRef50_UPI0000D56959 PREDICTED: similar to DNA polymerase iota n=1 Tax=Tribolium castaneum RepID=UPI0000D56959 Length = 537 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 146/277 (52%), Gaps = 36/277 (12%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIH+D+DCF+A VEM NP+LR +P+ I +++ ++ T+NY AR+FG++ M Sbjct: 9 RTIIHIDLDCFYAQVEMNKNPSLRTVPLGI----QQKNIVVTSNYTAREFGIKKCMLIPE 64 Query: 62 ALKLCPHLTLLPGR-FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT---------- 110 A KLCP L L+ G Y++ S + + +YT +E L LDE YLDVT Sbjct: 65 AKKLCPSLVLVNGEDLHDYRQTSYKVTNLLQKYTPLVERLGLDENYLDVTTLINEKLNQK 124 Query: 111 --------------DSVHCHGS-----ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKI 151 D C + AT +AQEIR I +EL LT+ AG+A K LAKI Sbjct: 125 SDLKLVGNVFGDTSDKCECGCTERLIIATTVAQEIRDVIKSELNLTSCAGIAHNKLLAKI 184 Query: 152 ASDMNKPNGQFVITPAEVPAFLQTLPLAK-IPGVGKVSAAKLEAMGLRTCGDVQKCDLVM 210 A +KPN Q V+ P + +L IPG+G+ +L+ +G+ T ++Q DL Sbjct: 185 AGARHKPNQQTVVFPNSALELILSLNAPNDIPGIGRALFEQLKCIGVETIEELQNVDLKR 244 Query: 211 LLKRFGK-FGRILWERSQGIDERDVNSERLRKSVGVE 246 L G+ +++ E S GID+ V +S+G+E Sbjct: 245 LETVLGQDKAKLVHELSLGIDKSGVKPTGKPQSIGLE 281 >UniRef50_B6K5W3 DNA polymerase kappa n=2 Tax=cellular organisms RepID=B6K5W3_SCHJY Length = 532 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 183/363 (50%), Gaps = 41/363 (11%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D F+A+VE + PA + P+A+G +GV+ TANY ARKFGVRSAMP + Sbjct: 115 RIIVHVDCDAFYASVEELEKPAYKTKPMAVG-----QGVLCTANYCARKFGVRSAMPEFI 169 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---S 118 A +LCP+L +LP R Y+E S I +I Y + S+DEAYLD+TD + H + Sbjct: 170 ARQLCPNLIVLPLRMMKYQEKSAEIAKILQEYDPNMCKASVDEAYLDLTDYLTKHNEEET 229 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTL 176 + + +RQT+ + +T S G+ LAKIAS+M KPN QF I T + F+ TL Sbjct: 230 VEAVVEHLRQTVAEKTGITVSCGIGANLMLAKIASNMRKPNDQFSIGRTREAILEFMDTL 289 Query: 177 PLAK--------IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERS-- 226 P K + G+G+V +L ++ + CGD+ L+R G + E+S Sbjct: 290 PCRKVYLELNHNVNGIGRVLEQELSSLNVHNCGDI--------LRRKGYLYYVFQEKSFQ 341 Query: 227 ------QGIDERDV--NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 GI V RKS+G E T + I SE + I ++L +K Sbjct: 342 NLLSYALGISNNVVKPTDASNRKSIGNEMTFS--IPMGSE-KTISQKLKQLCFSVSETMK 398 Query: 279 PDLLIARQGV-KLKFDDFQ-QTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHV 336 L+ V KLK F+ +T Q ++ N++D+I VRL+G+ + Sbjct: 399 QRNLVGNSVVLKLKTTSFEVRTRQTNLNTYTNESDIIYKYVLQLLSYELPVQVRLLGVRM 458 Query: 337 TLL 339 T L Sbjct: 459 TKL 461 >UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_9FIRM Length = 411 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 156/280 (55%), Gaps = 11/280 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H DM+ F+A+VE NP L++ P+A+ GS ER G++ NY A+ FGV + Sbjct: 3 RVILHCDMNNFYASVECMLNPELKNKPVAVCGSVEERHGIVLAKNYAAKAFGVSTGEAIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + C L ++ ++ Y + S REI+ RYT +IEP +DE +LDVT S C G+ Sbjct: 63 QAKQKCQDLVIVEPHYEQYMKFSKLAREIYGRYTDQIEPYGMDECWLDVTGS-GCMGTGF 121 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL---P 177 IA EIR+T+ EL LT SAGV+ K AK+ SDM KP+ IT E +F + + P Sbjct: 122 EIADEIRRTVKFELGLTISAGVSFNKIFAKLGSDMKKPDA---ITCIEADSFREKIWCHP 178 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV-NS 236 + + GVG+ + L + G+ T G++ L R GK G ++ + + G+D+ V S Sbjct: 179 ASDLLGVGRATEKVLSSYGIHTIGELAATSDDFLKCRLGKNGLVIKKYANGLDDSPVMRS 238 Query: 237 ERLR--KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 + + KS+G T +D+ + +E ++ L E+ +L Sbjct: 239 DYVSPVKSIGHGITTMQDLENNAEVWCVMLELVQEIGTKL 278 >UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAM5_9FIRM Length = 425 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 109/352 (30%), Positives = 181/352 (51%), Gaps = 21/352 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPA-------LRDIPIAIGGS-RERRGVISTANYPARKFGVRS 55 I HVD++ F + D A LRD+P AIGG + R G+I+ + PA+++G+ + Sbjct: 6 IFHVDVNSAFLSWTASDRMAKGIDKVDLRDLPSAIGGDPKTRHGIITAKSIPAKRYGIVT 65 Query: 56 AMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 P AL+ CP L L+PG + Y S + ++ +Y ++P S+DEA+ D+T + Sbjct: 66 GEPVSQALRKCPSLILVPGDYSLYARQSQALMDLLRKYAPAVDPFSIDEAFCDMTGTASL 125 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 +G L A +++ I +L T + G++ LAK+ASD KP+ + P E+P + Sbjct: 126 YGDPVLFAHKLKDEIRRDLGFTVNVGISSNHLLAKMASDFTKPDRVHTLWPREIPRKMWP 185 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 LP A + VG+ +A KL+++G+ T GD+ +L+ FGK G + + G + D+ Sbjct: 186 LPAADLLFVGESTAQKLKSLGILTIGDLAGTPEDLLVSHFGKHGSQMLAYANGTEPSDLT 245 Query: 236 SERLRKSVGV--ERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 S R RKS G E T++ D+ E I+ L L R+ +++ D I GV K Sbjct: 246 S-RHRKSRGFSNEITISHDLVDREEARLILLSLCETLAARI-RLQGD-KIRLVGVYYKDS 302 Query: 294 DFQQTTQEHVWPRLNKAD-----LIATARKTWDERRGGRGVRLVGLHVTLLD 340 F +++ RLN++ + TA E GR +RL+G+ + +D Sbjct: 303 SFVSASRQ---TRLNRSSSSTQTIYETALSLLHELWDGRPLRLLGVRGSEID 351 >UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXH9_9BACL Length = 402 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 178/343 (51%), Gaps = 13/343 (3%) Query: 1 MRKII-HVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMP 58 M K+I H+DM+CF+A+VE + NP L+ P+AI G + R G+I T+NY AR+ G+++ M Sbjct: 1 MSKVIAHIDMNCFYASVEEKYNPELKGKPLAIAGEVKTRHGIIVTSNYEARELGIKTTMR 60 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 G A K+ P++ +L Y++ S I ++ YT +IE +S+DEAY+D++D Sbjct: 61 VGDARKIYPNIKILRPDMPKYQQESKLIFDLVREYTDKIEIVSVDEAYIDLSD----FSE 116 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 + I++ I+ +L + +S GV+ KF AK+ S++ KP G +I L L + Sbjct: 117 PIKVIATIQRRIYKQLGMPSSVGVSFNKFFAKMGSNLKKPLGFSIINKKNYKDILWNLDI 176 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 ++ G G S KL+ +G+ T GD+ + V+L G G L ++ G ++ Sbjct: 177 GEMHGCGNASTKKLKKIGINTIGDIAVANEVILHSLLGVQGLRLKNKANGEGNSELKYTV 236 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQ 297 RKS+G +T D+ + I++L ++ R VK + + ++F DF+ Sbjct: 237 DRKSIGNSKTFTNDLIDEDDILKEIKKLSEKVSSR---VKSRSYVGNNISIMVRFSDFKT 293 Query: 298 TTQEHVWPRL--NKADLIATARKTWDERRG-GRGVRLVGLHVT 337 T+ P + D+ A + E +G+RL+G+ + Sbjct: 294 ITRSKKIPEFICDTNDIFNYAWELLLEHYDFTKGIRLLGVSLN 336 >UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutylicum RepID=DPO4_CLOAB Length = 396 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/349 (30%), Positives = 179/349 (51%), Gaps = 19/349 (5%) Query: 4 IIHVDMDCFF---AAVEMRDNPA---LRDIPIAIGGS-RERRGVISTANYPARKFGVRSA 56 I HVD++ F AVE N +R +P IGG + R GV+ + PA+K+G+ + Sbjct: 5 IFHVDVNSAFLSWTAVEKLKNGEDIDIRKVPSVIGGDEKSRHGVVLAKSTPAKKYGIVTG 64 Query: 57 MPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 A K CP++ + P RFD Y++AS + + R+T IE S+DE ++DVT+ + Sbjct: 65 ESLYHARKKCPNILVFPPRFDTYRKASESMMNLLKRFTPHIEKYSIDECFMDVTNDLRGM 124 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 S A I++ I NEL T + G++ + LAK+AS++NKP+ + E+ + L Sbjct: 125 ESVEF-ASIIKERIKNELGFTVNVGISTNRLLAKMASELNKPDKINTLYKHEIKDKMWPL 183 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P+ ++ VGK KL + ++T G++ K D+ +L +F G ++WE + GID D++ Sbjct: 184 PVGELFMVGKSMKRKLNELHIKTIGELAKYDVNILKAKFKSHGNMVWEYANGIDNSDISR 243 Query: 237 ERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 R K + E T++ D+ + I+ L L +RL V ++ DF Sbjct: 244 YRDEIKCISNETTLSMDLTDTEKIHKILVTLCENLGQRLRDANK--YCTSISVNIRTSDF 301 Query: 296 QQTTQEHVWPRLNKA-----DLIATARKTWDERRGGRGVRLVGLHVTLL 339 + + + +L A D+I A K ++E G +RL+G+ ++ L Sbjct: 302 RNYSHQ---KKLKNAVSSTRDIILYADKIFNEMWGREPIRLLGVQLSGL 347 >UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia RepID=B9MMT7_ANATD Length = 411 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 142/277 (51%), Gaps = 4/277 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE P LR+ P+A+ G E R G++ N A+ +G+++ Sbjct: 3 RVILHCDLNNFYASVECLYQPELRNKPVAVCGESELRHGIVLAKNQIAKSYGIQTGDVIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALK CP+L +L F Y S ++ I+S YT IEP +DE +LDV+ S S Sbjct: 63 QALKKCPNLVILKPNFPLYIRFSKLVQRIYSEYTDLIEPFGIDECWLDVSQSTGILRSGR 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EI++ I +EL LT S GV+ K AK+ SD KP+ VIT + LP Sbjct: 123 KIAYEIKERIKSELGLTVSVGVSFNKVFAKLGSDYKKPDAVTVITKENFKQIVWPLPAKD 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + VG + KL + + T GD+ K L + GK+G +LW + G+D V Sbjct: 183 LLYVGSATEKKLSSRAIYTIGDIAKSSPEYLKRILGKWGEVLWIFANGLDTTPVTPPLFE 242 Query: 241 ---KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 K +G T+ D+ + + E +I L + +RL Sbjct: 243 DNIKGIGNSITLPRDLTCYEDAEYVIRMLSESVAQRL 279 >UniRef50_B4MLB6 GK17515 n=1 Tax=Drosophila willistoni RepID=B4MLB6_DROWI Length = 1022 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 102/327 (31%), Positives = 160/327 (48%), Gaps = 50/327 (15%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAI----GGS----------------------- 34 R ++H+DMDCFF +V +R +P LR P+A+ GG+ Sbjct: 273 RYVMHIDMDCFFVSVGLRLHPELRGQPVAVTHSKGGNAATDVPVHPQADRQAEQELFAQR 332 Query: 35 ------------RERRGV--------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPG 74 + R G I++ +Y AR G+R+ M G AL+LCP L +P Sbjct: 333 FEHLLHDNIRADKVRTGFEKKMSLSEIASCSYEARAKGIRNGMFVGRALELCPELKTIPY 392 Query: 75 RFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTIFNE 133 FD Y+E +N + + ++YT IE +S DE ++++TD V +R+ + ++ Sbjct: 393 DFDGYREVANALYDTVAQYTLNIEAVSCDEMFVELTDLVSELQVDVMEFVGHLREEVRSK 452 Query: 134 LQLTASAGVAPVKFLAKIASDMNKPNGQFVITP-AEVPAFLQTLPLAKIPGVGKVSAAKL 192 SAGV K L+++A+ KPNGQF++ P ++ +++ L +PGVG + KL Sbjct: 453 TGCPCSAGVGANKLLSRMATKEAKPNGQFLLNPDGDILSYMAPTALESLPGVGSSISHKL 512 Query: 193 EAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAE 251 + GL CGDVQK + L G K + L + +GID R + E+ RKS+ E Sbjct: 513 KQAGLNNCGDVQKISVEQLETVLGKKMAQTLHQNCRGIDPRPLAYEQQRKSLSAEVNYGI 572 Query: 252 DIHHWSECEAIIERLYPELERRLAKVK 278 SECE + +L E+ RL +VK Sbjct: 573 RFTKTSECEKFLRQLSIEVHTRLKEVK 599 >UniRef50_C1DYT2 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1DYT2_9CHLO Length = 306 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 151/294 (51%), Gaps = 17/294 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMDCFFA+V P L +P+A+ S G +S+ NY AR G R+ M Sbjct: 3 RVILHVDMDCFFASVAALGRPELAGLPVAVSWSSAGGGELSSCNYLARNAGCRAGMRIAR 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HGSAT 120 A +LCP+L ++P F+ Y + + + + +S+DEAY+DVT C + Sbjct: 63 AKELCPNLIVMPYEFERYSAVAIDVYRTLHELSPHVMGVSVDEAYVDVTGLAACGRKTPR 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+++R IF + AS G P + +A++A+ KP+G + + +FL ++P+A+ Sbjct: 123 EIAEDVRAKIFAKTGCVASVGSGPNRLIARLATKRAKPDGSHHVPASNASSFLASMPVAE 182 Query: 181 IPGVGKVSAAKLEAMGLR---------------TCGDVQKCDLVMLLKRFG-KFGRILWE 224 +PGVG+ + KL G+ TC DV L +L + G K G L + Sbjct: 183 LPGVGRGTLEKLRREGIGSMVGAVGPMGTAGNPTCADVAAAPLSVLRRALGPKAGAQLRD 242 Query: 225 RSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 S+GID R + RKSVG + T +E A +E+L E+ R+ +++ Sbjct: 243 ASRGIDARAWEARPPRKSVGAQVTWGVRFEEAAEAVAFVEKLCAEVSERMRRLR 296 >UniRef50_Q8TIW3 DNA polymerase IV n=4 Tax=Methanosarcinaceae RepID=DPO4_METAC Length = 366 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 152/286 (53%), Gaps = 15/286 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAI---GGSRERRGVISTANYPARKFGVRSAMP 58 R IIHVDMD F+AA+E R+ P L + + G E G +ST NY AR+FG+RS MP Sbjct: 4 RVIIHVDMDYFYAAIEEREKPELLGKAVVVCMLSGRSELSGSVSTCNYIAREFGIRSGMP 63 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTS------RIEPLSLDEAYLDVTDS 112 A KL P LP R + Y S+ I EI Y E +S+DEA+L++T Sbjct: 64 CSRAKKLNPEAVFLPVRKEFYTSVSDRIMEILRSYADPGENGDSFEQISVDEAFLEIT-- 121 Query: 113 VHCHGSATL---IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEV 169 G L + +I++ I + LT S G+ P K +AK+AS KP+G V++P Sbjct: 122 YRAGGDFNLAFELGMQIKKEIKEKENLTCSIGIGPNKLIAKMASSAKKPDGITVVSPENQ 181 Query: 170 PAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQG 228 AFL L ++K+ G+G V+A KL+ M + T D+ + D++ L+ FGK G L + + G Sbjct: 182 EAFLWPLKVSKLWGIGDVTAKKLQEMDIVTVKDLAEHDVIELISTFGKSRGTWLKQAASG 241 Query: 229 IDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 ID+ + + +G T+ ED +++E+L ++ +L Sbjct: 242 IDDSPLKEREGSEQIGRIATLPEDTLDQELILSLLEKLAGDVIEKL 287 >UniRef50_D1BHR1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Actinomycetales RepID=D1BHR1_SANKS Length = 489 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/275 (37%), Positives = 156/275 (56%), Gaps = 8/275 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I H+D D FFA+VE P+LR P+ +GG R V++TA+Y AR +G RSAMP A Sbjct: 7 IAHLDADAFFASVEQHQRPSLRGRPVLVGGVGPRG-VVATASYEARAYGARSAMPMEQAR 65 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT--- 120 ++CP T++ RFDAY S I E+ + ++E +S+DEA+ ++ H GS+ Sbjct: 66 RMCPTATVVVPRFDAYSAYSAQIMEVLREVSEQVEAISIDEAFAELD---HLPGSSADLE 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A E R+ L+ S G+ K +AK+AS+ KP G V+ PA+ AFL LP+ Sbjct: 123 ALALEFRRRAHERTGLSVSLGLGRSKLVAKLASEAAKPGGVKVVDPADEDAFLLALPVRA 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERL 239 + GVG VSAA+L+ +G+RT D++ + L+ G+ G L+ ++G D+R V + R Sbjct: 183 LWGVGPVSAARLDQLGVRTVEDLRAQPMDTLVMATGEAAGTNLYRIARGWDDRPVTTVRE 242 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 RKS G E T +D+H A ++ + RRL Sbjct: 243 RKSAGAEHTFDDDLHGRRAIAAALDGVTDSALRRL 277 >UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDA2_9FIRM Length = 469 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/277 (35%), Positives = 150/277 (54%), Gaps = 4/277 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ +A +E NP L+ P+A+GGS+E R G+I N A+K+ +++ Sbjct: 50 RAIVHSDINHCYAQIEEMLNPELKQRPMAVGGSQEERHGIILAKNLHAKKYKIQTGETLD 109 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L +LP + Y+ ++ ++ I+ YT R+E LDEA+LD+T S G A+ Sbjct: 110 EARIKCPQLLILPPDYRRYQRITDQVKAIYREYTDRVEEYGLDEAWLDLTQSQRLFGPAS 169 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+ I+Q ++ EL LT S G++ K AK+ASD KP+G IT A + L + + Sbjct: 170 QIARTIQQRVYAELGLTISIGLSFNKIFAKMASDFVKPSGFVTITRANFQEKIYPLSVRE 229 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRIL--WERSQGIDERDVNSER 238 + VG + KLEA G+ T GD+ D + + FGK G +L + + I E + SE Sbjct: 230 LFYVGAATQKKLEAWGITTIGDLASRDRQFMRRYFGKVGEMLHWFALGEDISEVALASEA 289 Query: 239 L-RKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 + KSVG T D+H E ++ L + RL Sbjct: 290 IPVKSVGNSVTAVHDLHTHGEARLVLRVLAESVASRL 326 >UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomycetales RepID=D1C0B2_XYLCX Length = 430 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 173/340 (50%), Gaps = 16/340 (4%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD FFA E+ P LR +P+ +GG RGV+ A Y AR FGVRSAMP A Sbjct: 22 SIMHVDMDAFFALCELARRPELRGLPVIVGG--RGRGVVLAATYEARVFGVRSAMPMVSA 79 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 ++LCP ++P Y + S + + T +E +S+DEA+LDV+ + G T+I Sbjct: 80 MRLCPQAVIVPPDHRRYTDVSRSVMATMAEITPIVEQISIDEAFLDVSGARRRLGPPTVI 139 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVPAFLQTLPLAKI 181 +R + +T S G+A KFLAK+AS KP+G ++ A VP FL+TLP+ + Sbjct: 140 GARLRAHVQAVHGVTCSVGIAKNKFLAKLASTHAKPDGMLLVPDEASVP-FLRTLPVGAL 198 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLR 240 GVG+ + A L G+ + + D+ L G G L + + G D R V Sbjct: 199 WGVGEKTEAVLARWGITSVAQLADTDVRTLQAAVGVVHGAHLHDLAWGRDPRPVVPTERE 258 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTT 299 +S+G E T D H + EA RL ++ A+ + ++ R +K++ +DF+ T Sbjct: 259 RSIGNETTFGSDQHDLAAVEA---RLLELCDKVAARCREQGVVTRTVALKVRTNDFRTLT 315 Query: 300 QEHVW--PRLNKADLIATARK---TWDERRGGRGVRLVGL 334 + P DL AR+ D R G VRLVG+ Sbjct: 316 RSRTLDGPTDVARDLYRVARELLAAVDLR--GLPVRLVGV 353 >UniRef50_Q54KS3 UMUC-like DNA-repair protein n=1 Tax=Dictyostelium discoideum RepID=Q54KS3_DICDI Length = 517 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 121/204 (59%), Gaps = 6/204 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IH+DMD F+A VE DN L P+A+G ++ T+NY AR +GVRS +P + Sbjct: 81 RTFIHIDMDAFYANVEEMDNKELIGHPVAVGSI----DMLVTSNYAARAYGVRSGLPGLL 136 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A+KLCPHL +LP R D Y+E S IR I ++ SLDE +D+T+ + + + T Sbjct: 137 AMKLCPHLIILPSRMDRYREVSLIIRNILYKFDKNYVSPSLDEGCIDITEYLKDNENLTG 196 Query: 122 I--AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 I A +++ IF + LT S G++ L+KI+S++NKPNG F + F++T+ + Sbjct: 197 IDVANQLQNDIFEKTTLTCSMGISCSPLLSKISSEINKPNGYFYLDKQYSQEFIKTIQIK 256 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDV 203 K+PG+GKV L+ +GL D+ Sbjct: 257 KLPGIGKVRQELLKTLGLEFVSDI 280 >UniRef50_UPI0001C32444 DNA-directed DNA polymerase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32444 Length = 370 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 155/301 (51%), Gaps = 10/301 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D D F+A+VE+ P LRD + + R V++TA+Y AR++GV SAMP Sbjct: 13 RVIAHLDCDAFYASVELLRRPDLRDKAVIVAHDGPR-SVVTTASYAARRYGVGSAMPLSR 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH LLP F++Y+ S + EI R++ L LDEAY D+T Sbjct: 72 AKRLCPHAILLPPDFESYRRVSRALWEIVGGRLGRLQHLGLDEAYADLTGVE----KPVR 127 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + +E+ + + E +T S G+ P + +AKI SD+ KP G + E + Sbjct: 128 VLRELVEQVRAETGITVSVGLGPSRLIAKICSDLGKPAGFVAMGREEAAQRFAGHSPKLL 187 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PG+G S +L MG+ T G +Q L +RFG + GR L R+ D +V + R+ Sbjct: 188 PGIGPKSVERLREMGIETIGQLQATPEERLTERFGARHGRDLLRRAHFHDSSEVETSRVL 247 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLA-KVKPDLLIARQGVKLKFDDFQQTT 299 KS ERT ED+ ++ E I+ RL L L + K IA +K++ DD+ T Sbjct: 248 KSRSNERTFDEDVTSLTQLEEILRRLAQGLCEGLQRREKRGRTIA---IKVRLDDWTTVT 304 Query: 300 Q 300 + Sbjct: 305 R 305 >UniRef50_A9UXX3 Predicted protein (Fragment) n=2 Tax=Eukaryota RepID=A9UXX3_MONBE Length = 456 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 150/302 (49%), Gaps = 58/302 (19%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H D D F+AAVE+RD P LR PI IGG G++STA+Y ARKFGVRSAMP + Sbjct: 89 RVIVHCDADAFYAAVELRDQPHLRGKPIGIGGI----GMLSTASYEARKFGVRSAMPGYI 144 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD---------- 111 AL+LCP L L+ RF AY+ AS ++ + ++Y +SLDEAYLD+TD Sbjct: 145 ALRLCPELILVKPRFHAYEAASRQLQAVMAQYDPNFRSVSLDEAYLDITDYMARLTPGDV 204 Query: 112 --------------------------------------SVHCHGSATLIAQEIRQTIFNE 133 ++ A + ++R + Sbjct: 205 AQLPPLTTVADPPLVQEANSADSKPGMATDSAGARNLTTLEGRALAARVVHQMRTRMHET 264 Query: 134 LQLTASAGVAPVKFLAKIASDMNKPNGQFVITP--AEVPAFLQTLPLAKIPGVGKVSAAK 191 QLT SAG+A + LAKI SD NKP+GQF + A + AFL +P KIPG+GKV+ Sbjct: 265 TQLTVSAGIACNRMLAKIGSDQNKPDGQFCLPADRAAILAFLANMPTRKIPGIGKVTEQI 324 Query: 192 LEAMGLRTC-GDVQKCDLVMLLKRFGKFGRILWERSQ-GIDERDVNSERLRKSVGVERTM 249 L + + C +Q+ L+ LL F + RS GI + RKS+G E T Sbjct: 325 LRELDITNCQALLQQRALLKLL--FTPISFDFFMRSALGIASNNTRKRSERKSIGHETTF 382 Query: 250 AE 251 E Sbjct: 383 RE 384 >UniRef50_B6HNR2 Pc21g13870 protein n=17 Tax=Leotiomyceta RepID=B6HNR2_PENCW Length = 611 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 117/313 (37%), Positives = 172/313 (54%), Gaps = 23/313 (7%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 +IHVD D FFAAVE D P L+ +P+A+G +GV++T NY ARKFGVRS M + +A Sbjct: 114 VIHVDCDAFFAAVEELDRPELKRVPMAVG-----KGVLTTCNYLARKFGVRSGMASFVAK 168 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC---HGSAT 120 KLCP L LLP ++ Y + IR I + Y E S+DEAYL++T +C H Sbjct: 169 KLCPQLVLLPQNYEKYTAKAKEIRAIMAEYDPLFESASIDEAYLNIT--AYCNENHLEPD 226 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA---FLQTLP 177 + + +R I +++ SAG+A +AKIAS++NKPNGQF + P + A F++ L Sbjct: 227 EVVRRMRAEILETTKVSVSAGIAANAKIAKIASNINKPNGQFQV-PNDRDAIMEFMRDLS 285 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVN- 235 + K+ G+G+V +LE++G++ CGD+ +L K FG K + L + G+ + Sbjct: 286 VRKVNGIGRVFERELESIGVKKCGDIFP-HRALLTKLFGEKAFQFLAQCYLGLGRTKMEP 344 Query: 236 -SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV-KLKFD 293 RKSV E T E I E A + ELE+ LA+ + R V K+K Sbjct: 345 VETHERKSVSTETTFHE-IGDKEELRAKLWWAAQELEKDLARTQ---FKGRTLVLKVKLH 400 Query: 294 DFQQTTQEHVWPR 306 F+ T++ PR Sbjct: 401 TFEVLTRQTAPPR 413 >UniRef50_A9A3A9 DNA polymerase IV n=6 Tax=Thaumarchaeota RepID=DPO4_NITMS Length = 364 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 132/238 (55%), Gaps = 8/238 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 R + H+D D F+A E +P L+ P+ + +R G I+TANY ARK+G +S +P Sbjct: 4 RIVFHIDFDYFYAQCEEIRSPELKSKPVCVCVFSDRGGDSGAIATANYTARKYGAKSGIP 63 Query: 59 TGMALKLCPH---LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 A K LP FD Y E S +I ++ E + DEAYLDVT Sbjct: 64 IVFAKKRLEERKDAVFLPVDFDYYSEMSEKAMKIMEEFSDVFEYVGRDEAYLDVTKRTEG 123 Query: 116 -HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 A+ +AQ+I+ +I + +L+ S G++P K ++KIASD KP+G +++P +V FL+ Sbjct: 124 DFHKASHLAQQIKNSIREKTKLSCSIGISPNKLISKIASDFQKPDGLTIVSPEKVEGFLE 183 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231 +L + IPG+GK + + M L T GDV++ D+ L K FG K G ++ +GID+ Sbjct: 184 SLKIRDIPGIGKKTEQRFTEMNLETIGDVKRLDVFTLNKEFGRKSGTYIYNAVRGIDD 241 >UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42_RHILO Length = 415 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 151/303 (49%), Gaps = 18/303 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H D+D F+A+VE +P+LR PIA+GG GV+ A+Y AR FGVR MP A Sbjct: 7 ILHADLDAFYASVEQLLDPSLRGKPIAVGG-----GVVLAASYEARAFGVRGGMPGRKAR 61 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP L + G F Y+ + ++ +T +E +S+DEA+ DV H G IA Sbjct: 62 ELCPQLIFVGGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTHLFGQPRDIA 121 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR + EL L S GVA K LAKIAS + KP+G V+ P FL LP++ + G Sbjct: 122 TAIRHRVRAELGLPISIGVARTKHLAKIASQVAKPDGLVVVDPGTELDFLHDLPVSLMWG 181 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-----KFGRILWERSQGIDERDVNSER 238 VG + ++L +G++T G++ + L + G K + W R D R + + R Sbjct: 182 VGPATKSRLAEIGIQTIGELARTHSGALTRLLGPAAGEKLAALAWNR----DPRKLETRR 237 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL-AKVKPDLLIARQGVKLKFDDFQQ 297 S G + + + + L + RL AK +P + V+++F D Sbjct: 238 RAHSAGAQSALGQKPAVARVIVPTLLHLADRVASRLRAKARPGRTVT---VRVRFADLSA 294 Query: 298 TTQ 300 T+ Sbjct: 295 VTR 297 >UniRef50_D0NDK9 DNA repair protein REV1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NDK9_PHYIN Length = 943 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 146/282 (51%), Gaps = 9/282 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIG-GSRERRGVISTANYPARKFGVRSAMPTG 60 R I+HVDMDCFF AV +RD P L+D+P+A+ S IS+ NY AR GV + M Sbjct: 255 RVILHVDMDCFFVAVAVRDKPELQDVPVAVAHSSNAGSSEISSCNYSARAKGVGAGMFMQ 314 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L +LP +FD + S I +IF +T ++ +S DEA+L+ Sbjct: 315 TAKELCPELIVLPYQFDDIQRVSFQIYDIFFSHTPYVQAVSCDEAFLEFEKGT----KGM 370 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT-PAEVPAFLQTLPLA 179 A IRQ IF + AS GV+ LAK++S KP+G + I+ P++ F+ L + Sbjct: 371 EKANAIRQEIFEQTGCPASVGVSFNILLAKLSSKKAKPDGVYAISDPSQAKEFMLQLKVR 430 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDER--DVNS 236 +PG G ++AAKLEA+G+ + L++ GK G L+ ++G+D R + S Sbjct: 431 DLPGAGHMTAAKLEALGVEDARQLVSMTRTELVQSLGKAAGERLFNYARGVDMRPLSMES 490 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 +RKSV W + + L EL RL +K Sbjct: 491 NMMRKSVSAVVNFGIRFDKWEDATVFLMALGEELSHRLRNLK 532 >UniRef50_A5BB36 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5BB36_VITVI Length = 500 Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 130/226 (57%), Gaps = 5/226 (2%) Query: 12 FFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTGMALKLCPHL 69 F + V +R NP L+D P+A+ S +G IS+ANYPAR +GV++ + A LCPHL Sbjct: 258 FLSPVVIRXNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVRDAKALCPHL 317 Query: 70 TLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQT 129 + P F+AY+E ++ I ++ ++++ +S DEA+L+V DS G L+A IR+ Sbjct: 318 VIFPYNFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEVMDSK--XGDPELLASIIRKE 375 Query: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSA 189 IF TASAG+A +A++A+ KPNGQ I +V +L LP+ +PG+G V Sbjct: 376 IFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKALPGIGHVLE 435 Query: 190 AKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDV 234 KL + TCG ++ L + FG K G +LW +G+D R V Sbjct: 436 EKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVV 481 >UniRef50_A5Z8E0 Putative uncharacterized protein n=10 Tax=Clostridiales RepID=A5Z8E0_9FIRM Length = 428 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 185/357 (51%), Gaps = 21/357 (5%) Query: 4 IIHVDMDCFF---AAVEM-----RDNPAL--RDIPIAIGGSRERR-GVISTANYPARKFG 52 I H+D++ + AV++ +D + R+IP IGG RE+R G++ + A+KFG Sbjct: 4 IFHIDVNSAYLSWTAVKLLKEATKDEKKIDIRNIPAIIGGDREKRHGIVLAKSISAKKFG 63 Query: 53 VRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS 112 + + P AL+ CP++ ++P Y E S+ + + +T IE +S+DE Y+D + Sbjct: 64 IVTGEPIANALQKCPNILIVPPEHGYYNEQSHKLMNLLRTFTPDIEQVSVDECYMDFSGI 123 Query: 113 VHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAF 172 + + S A +I+ T+ +L T + G++ VK LAK+ASD KP+ + E+ Sbjct: 124 QNEYPSPLACAYKIKDTVKEKLGFTVNVGISDVKVLAKMASDFTKPDKVHTLYRREIKEK 183 Query: 173 LQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDER 232 + LP+ ++ GK S L +G+ G + +L K G+ILWE + GID+ Sbjct: 184 MWQLPVEELYMAGKSSVNTLHKLGIYNIGQLATSPEYILEAHLKKHGKILWEYANGIDKS 243 Query: 233 DVNSERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 VN++R K VG T+ D+ + E E I+ +L ++ RL K K + V++K Sbjct: 244 VVNTKREELKGVGNSITLPYDLDNMEEIEKILLQLSEKVAGRLRKGKQ--MAKTVAVEVK 301 Query: 292 FDDFQQTTQEHVWPRLNKA--DLIATA----RKTWDERRGGRGVRLVGLHVTLLDPQ 342 ++DF + +++ R + ++ + R+ W E+ G + VRL+G+ L+ Q Sbjct: 302 YNDFIKASRQTTLDRCTDSGTEIYQLSKELFRELW-EKDGNKSVRLLGIRTANLEEQ 357 >UniRef50_Q9UBZ9 DNA repair protein REV1 n=27 Tax=Tetrapoda RepID=REV1_HUMAN Length = 1251 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 161/325 (49%), Gaps = 54/325 (16%) Query: 4 IIHVDMDCFFAAVEMRD--------------------------NPALR------------ 25 I+HVDMDCFF +V +R+ NP L Sbjct: 419 IMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGK 478 Query: 26 --DIPIAI----GGSRERRGV--------ISTANYPARKFGVRSAMPTGMALKLCPHLTL 71 DIP + S + G+ I++ +Y AR+ G+++ M G A +LCP+L Sbjct: 479 AADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQA 538 Query: 72 LPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTI 130 +P F AYKE + + E + YT IE +S DEA +D+T+ + + A +R I Sbjct: 539 VPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEI 598 Query: 131 FNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAA 190 ++ + AS G+ LA++A+ KP+GQ+ + P EV F++ + +PGVG + Sbjct: 599 KDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMES 658 Query: 191 KLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTM 249 KL ++G++TCGD+Q + L K FG K G++L+ +G+D+R V +E+ RKSV E Sbjct: 659 KLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINY 718 Query: 250 AEDIHHWSECEAIIERLYPELERRL 274 E EA + L E++RRL Sbjct: 719 GIRFTQPKEAEAFLLSLSEEIQRRL 743 >UniRef50_B3RQD9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RQD9_TRIAD Length = 1014 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 1/207 (0%) Query: 41 ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPL 100 I++ NY AR++G+ + M G AL+LCPHL ++P FD YKE S + + YT I + Sbjct: 398 IASCNYVARRYGLHNGMFMGRALQLCPHLRVVPYEFDKYKEVSKLLYNTLASYTFEIMAI 457 Query: 101 SLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNG 160 S DEAY+DVTD + + +A IR I ++ T SAG+ P +A++A+ + KPNG Sbjct: 458 SCDEAYIDVTDILQDDYTIQDLASSIRHDIESKTGCTCSAGIGPNLLIARMATRIAKPNG 517 Query: 161 QFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFG 219 Q + PA V F+ L +PGVG KL+ + + TC D++K L +L + FG K G Sbjct: 518 QHYVDPANVLTFVANQSLKDLPGVGYRLHRKLKDLNVETCQDLRKISLPVLQRDFGTKTG 577 Query: 220 RILWERSQGIDERDVNSERLRKSVGVE 246 +L++ +GIDER V + RKSV E Sbjct: 578 LMLYQYCRGIDERPVQVDHERKSVSAE 604 >UniRef50_A8EUX3 DNA polymerase IV n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUX3_ARCB4 Length = 421 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 141/289 (48%), Gaps = 46/289 (15%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER-------------------------- 37 IH+D+DCFF + E N +L DIP+A+GG Sbjct: 2 FIHLDIDCFFVSAERTLNKSLLDIPVAVGGRSSNDIFSSKKVQRTIATNRAAFSSKILSN 61 Query: 38 -----------------RGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYK 80 RG+I+T +Y ARKFGV++AM AL+LCP L ++P + Y Sbjct: 62 DTHKSFKEYFIDENGRIRGIITTCSYEARKFGVKTAMSVNEALRLCPKLKMIPPNYSLYD 121 Query: 81 EASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASA 140 E SN ++++ + IE S+DE + DV+ + A +++ I +EL L S Sbjct: 122 ELSNKLKDLLEKEVPLIEQYSIDEFFCDVSGYIK-EDEILEFAHFLKKKILDELDLPISI 180 Query: 141 GVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTC 200 G+A K+L+K+ ++ KPNG ++ ++P F + +P+ G+GK KL+ + T Sbjct: 181 GIASTKYLSKLMTEYAKPNGIKYVSSQDMPEFTKDIPIENFSGIGKALCEKLKGYNINTL 240 Query: 201 GDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTM 249 GD++K L + K G L+ R GI + + +R RKS+G+ R+ Sbjct: 241 GDIRKNQ--KLFYSWQKSGIDLYNRVCGIRDNKLTIQRERKSLGIGRSF 287 >UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAW2_HELMI Length = 409 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 114/350 (32%), Positives = 173/350 (49%), Gaps = 19/350 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTGMA 62 ++ DM+ F+A+VEM NP LR P+ + G ERR G+I A+ A++ GV++AM G A Sbjct: 7 VLLADMNSFYASVEMAHNPTLRGQPVLVCGDPERRHGIILAASREAKRRGVKTAMTVGEA 66 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +CP + R Y E S I++I + +EP S+DE ++DV + H G A Sbjct: 67 RAICPDAVCVRPRMSLYLEVSWQIQQIARTLSPLVEPYSVDELFIDVRGAEHIWGDAVEA 126 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDM---NKPNGQFVITPAEVPAFLQTLPLA 179 A RQ ++ +++ S GV P KFL+K+A D+ P+G + +V A L LP+ Sbjct: 127 AGIFRQRVWEAVKVPCSVGVGPNKFLSKMACDVEAKKSPSGVALWRVDDVEAKLHPLPIG 186 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 K+ VG MGL T GD+ + L++RFG G + + G D V + L Sbjct: 187 KMFMVGSRMERHFRNMGLLTIGDLAHYPVDYLMRRFGLRGAVYHNLAWGRDGSPVRPDSL 246 Query: 240 R--KSVGVERTMAEDIHHWSECEAIIERLYPELERR---LAKVKPDLLIARQGVKLKFDD 294 KSVG T+ D HH + E ++ L E+ RR L K + + + L Sbjct: 247 EQTKSVGHSVTLPRDYHHSDDIELVLLELTDEVCRRARKLGKAGRTVSVGLRAYDLTRGF 306 Query: 295 FQQTT----QEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD 340 ++QTT P KA L+ R+ WD GR VR V + ++ L+ Sbjct: 307 YRQTTLPSPSNLSGPVFEKAQLL--FRRHWD----GRPVRTVTVDLSGLE 350 >UniRef50_UPI00016E76F4 UPI00016E76F4 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E76F4 Length = 1200 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 104/324 (32%), Positives = 158/324 (48%), Gaps = 53/324 (16%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR------ERRGV----------------- 40 I HVDMDCFF +V +R+ P L+ P+A+ +R R G Sbjct: 408 IFHVDMDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKVLHRPGANPQLERHYYQWKQSHTK 467 Query: 41 ----------------------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLL 72 I++ +Y AR+ GVR+ M G A +LCP L + Sbjct: 468 SGETPSQESPESNTSGAGQETAALSMAEIASCSYEARQAGVRNGMFFGKAKQLCPSLQAV 527 Query: 73 PGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTIF 131 P F+AYKE + + E + YT IE LS DE +D + + S +A+ IR I Sbjct: 528 PYDFEAYKEVALTMYETLAGYTHDIEALSCDELLIDSSALLAELCISPEELAKAIRADIK 587 Query: 132 NELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAK 191 + AS G+ LA++A+ KP+GQ + +V F++ LP+ +PGVG V + K Sbjct: 588 EKTGCCASVGMGSNILLARLATRKAKPDGQHFLRSEDVDDFIRDLPVTSLPGVGPVMSRK 647 Query: 192 LEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMA 250 L AMG+R+CGD+Q+ L L K+FG + G+ L+ +G+D+R V E+ RKSV + Sbjct: 648 LVAMGVRSCGDLQQVSLSQLQKKFGPRTGQTLFRFCRGLDDRPVRYEKERKSVSADMNYN 707 Query: 251 EDIHHWSECEAIIERLYPELERRL 274 +E E + L E+++RL Sbjct: 708 IRFTTVNEAECFLTNLSMEVQKRL 731 >UniRef50_Q4KWZ7 REV1 protein n=9 Tax=Euteleostomi RepID=Q4KWZ7_CHICK Length = 1255 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 138/236 (58%), Gaps = 2/236 (0%) Query: 41 ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPL 100 I++ +Y AR+ G+++ M G A KLCP+L + F+AYKE + + EI + YT IE + Sbjct: 519 IASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQTVYEILASYTHNIEAV 578 Query: 101 SLDEAYLDVTDSV-HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPN 159 S DEA +D+T+ + + +A IR I + + TAS G+ LA++A+ KP+ Sbjct: 579 SCDEALVDITEILTETRLTPDELANAIRDEIKAQTKCTASVGMGSNILLARMATRKAKPD 638 Query: 160 GQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KF 218 GQ+ + P EV F++ + +PGVG+ +KL ++G+RTCGD+Q + L K FG K Sbjct: 639 GQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKLASLGIRTCGDLQCASMSKLQKEFGPKT 698 Query: 219 GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 G++L+ +G+D+R V +E+ RKSV E E EA + L E++RRL Sbjct: 699 GQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRL 754 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 24/32 (75%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR 35 I+HVDMDCFF +V +R+ P L+ P+A+ +R Sbjct: 423 IMHVDMDCFFVSVAIRNRPDLKGKPVAVTSNR 454 >UniRef50_B3RPL1 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3RPL1_TRIAD Length = 386 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 148/284 (52%), Gaps = 39/284 (13%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIH+D+DCF+A VEM N +LR+ P+ I ++ +I T+NYPAR+ GV +P Sbjct: 3 RTIIHLDIDCFYAQVEMAKNSSLRNKPVGI----RQKHIIVTSNYPARERGVGKLIPLTK 58 Query: 62 ALKLCPHLTLLPGR-FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC----- 115 AL+ CP L ++ G Y+E S + + ++++++ L DE Y+DVT+ V C Sbjct: 59 ALEKCPDLIVINGEDLTEYREVSFKVTDYLKKFSTKVHRLGFDENYIDVTELVQCRLNQF 118 Query: 116 ----------HGSATL------------------IAQEIRQTIFNELQLTASAGVAPVKF 147 S T+ IA E+RQ ++N LT+S G+A K Sbjct: 119 QGRLFVGYLYQNSNTVKAQACDCNCRLRMIIGSQIAAEMRQGLWNVFSLTSSGGIAHNKM 178 Query: 148 LAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCD 207 L+KI S ++KPN Q I P + L +L L KI G+G + KL+++G+ T ++ Sbjct: 179 LSKIVSGLHKPNLQTAIYPEDTLDLLHSLELRKIAGIGSATNNKLQSVGITTVKELSTLP 238 Query: 208 LVMLLKRF-GKFGRILWERSQGIDERDVNSERLRKSVGVERTMA 250 L +L F L++ +GID+ DV + KS+GVE + + Sbjct: 239 LAVLKTHFPTPQACTLFQWCKGIDDSDVVAATKPKSIGVEDSFS 282 >UniRef50_Q7NAR2 UmuC/DinP-like n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAR2_MYCGA Length = 405 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 149/280 (53%), Gaps = 10/280 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I H+D D FFA+VE NP + P+ +G S+ ++S+ANY ARKFGVRSAMP Sbjct: 11 KTIFHIDFDAFFASVEENFNPEYNNKPLVVG-SKSNGSIVSSANYIARKFGVRSAMPIFQ 69 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTS-RIEPLSLDEAYLDVTDSVHCHG--S 118 A KLCP L + + Y+ S ++ + S ++E S+DE Y+DVTD + + S Sbjct: 70 AKKLCPSLIIAEVDYPKYERVSAYVFSYLRDFVSNKMEVASIDECYMDVTDILEKNSEIS 129 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A+ +A++I++ I+ QLT S G++ FLAK+ASD NKPNG + I P E+ L L + Sbjct: 130 ASDLAKKIQKQIYELTQLTVSIGISSNLFLAKMASDQNKPNGVYEIWPDEIEEKLWPLEI 189 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWE---RSQGIDERDVN 235 K+ +G L + ++ G+ + + LL F + W+ + G V+ Sbjct: 190 KKMYLIGSKKIPLLNQLNIKNIGNFAQFENKELL--IDIFKNMYWDHYNHAHGKGSDFVD 247 Query: 236 SER-LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 ER RKS+ V + + + + + L+ ++ RL Sbjct: 248 YERNSRKSISVSKNIRHKVSDYESLLKLFNDLFDDVYSRL 287 >UniRef50_C5JS23 DNA damage repair protein Mus42 n=2 Tax=Ajellomyces dermatitidis RepID=C5JS23_AJEDS Length = 1171 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 145/291 (49%), Gaps = 18/291 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R +P L D P+AI I++ NYPAR FG+++ M Sbjct: 370 RYILHVDFDSFFAAVSIRKHPELVDQPVAIAHGTGPGSEIASCNYPARSFGIKNGMWMKA 429 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT----DSVHCHG 117 AL++CP+L +LP F AY++AS E+ ++ +S+DEA +D+T D+ G Sbjct: 430 ALQMCPNLKVLPYDFAAYEQASRAFYEVILSIDGIVQSVSIDEALVDITGVCLDAGGSDG 489 Query: 118 -------------SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ +R ++ S G+ A++A KP GQF + Sbjct: 490 RGISEGSIWREQEKADEIAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQL 549 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ TL + +PGV AKLE +G+ D++ L G K G LW Sbjct: 550 KPDAVLDFIGTLAVKDLPGVAHSLGAKLEELGVTFVKDIRDLSREKLTSSLGPKTGAKLW 609 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 + ++GID +V + RKSV E + ++ E ++ L EL RRL Sbjct: 610 DFARGIDNTEVGVQAPRKSVSAEINWGIRFVNQAQAEEFVQSLCDELHRRL 660 >UniRef50_UPI000180D06B PREDICTED: similar to GH15415 n=1 Tax=Ciona intestinalis RepID=UPI000180D06B Length = 593 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 2/232 (0%) Query: 41 ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPL 100 I++ +Y AR G+R+ M G A +LCP L +P F+AYK+ S + + + YT +E + Sbjct: 361 IASCSYEARAAGLRNGMFYGRAKELCPDLIAIPYDFEAYKDISQKLYTVLASYTQSLEAV 420 Query: 101 SLDEAYLDVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPN 159 S DEA LDVT V + +IAQ IR I + ASAG+ P LA++A+ + KPN Sbjct: 421 SCDEALLDVTQLVEDTSLTPQVIAQNIRGKILDATGCNASAGIGPNIALARMATRLGKPN 480 Query: 160 GQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KF 218 GQ +T + F++ LP+ +PGVG+ +A++L +G TCG++QK +L K FG K Sbjct: 481 GQHEVTLQQAEEFIRDLPVKDLPGVGRATASRLRELGASTCGELQKIHPDLLKKEFGNKT 540 Query: 219 GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPEL 270 G+ L E S+GIDER+V + RKSV + + E + + L E+ Sbjct: 541 GQKLHELSKGIDEREVCQSKERKSVSADVNYGIRLKTEDEMKTFLNNLSNEV 592 >UniRef50_UPI0000D862D7 hypothetical protein CIMG_01093 n=1 Tax=Coccidioides immitis RS RepID=UPI0000D862D7 Length = 1021 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 144/291 (49%), Gaps = 18/291 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R NP L D P+AI I++ NYPAR FG+++ M Sbjct: 348 RYILHVDFDSFFAAVSIRKNPELADKPVAIAHGTGAGSEIASCNYPARAFGIQNGMWMQG 407 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGS-- 118 AL++CP L +LP F AY++AS E ++ +S+DEA +D+T + GS Sbjct: 408 ALQMCPDLKVLPYDFAAYEDASRKFYEAILDIDGIVQSVSIDEALVDITKLCLEAGGSEG 467 Query: 119 --------------ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ +R ++ + S G+ AK+A KP GQF + Sbjct: 468 KGISEGSIWKEQAKADEIAQTLRDSVKQKTGCDVSVGIGGNILQAKLALRKAKPAGQFQL 527 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ L + ++PGV AKLE +G++ D+++ L G K G LW Sbjct: 528 KPEVVLEFIGELTVQQLPGVAYSLGAKLEELGVKFVKDIRELSRERLTSNLGPKTGAKLW 587 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 + ++GID DV RKSV E ++ E ++ L EL RRL Sbjct: 588 DYARGIDNADVGDVAPRKSVSAEINWGIRFVTQAQVEEFVQSLCDELHRRL 638 >UniRef50_C0S277 DNA polymerase IV n=5 Tax=Onygenales RepID=C0S277_PARBP Length = 1161 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 18/293 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R +P L D P+AI I++ NYPAR FG+++ M Sbjct: 366 RYIMHVDFDSFFAAVSIRKHPELADQPVAIAHGTGPGSEIASCNYPARSFGIKNGMWMKG 425 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGS-- 118 AL++CP+L +LP F AY+EAS + E+ ++ +S+DEA +D+T+ + GS Sbjct: 426 ALQMCPNLKVLPYDFAAYEEASRNFYEVILAIDGIVQSVSIDEALVDITNICLDAGGSDG 485 Query: 119 --------------ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ++R ++ + S G+ A++A KP GQF + Sbjct: 486 IGISEGSIYREQAKADEIAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQL 545 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ L + +PGV KLE +G+ D+++ L G K G LW Sbjct: 546 KPDAVQDFIGELTVKDLPGVAHSLGGKLEELGVVFVKDIRELSKEKLTSSLGPKTGAKLW 605 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAK 276 ++GID +V + RKSV E + ++ E ++ L EL RRL + Sbjct: 606 NYARGIDNTEVGIQVPRKSVSAEISWGIRFVSQTQAEEFVQSLCDELHRRLVE 658 >UniRef50_C4G2M8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2M8_ABIDE Length = 414 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 116/365 (31%), Positives = 178/365 (48%), Gaps = 25/365 (6%) Query: 4 IIHVDMDCFF----AAVEMRDNPA---LRDIPIAIGGS-RERRGVISTANYPARKFGVRS 55 I HVD++ F A ++++ P LR IP AIGG +R GVI+ + PA+K GVR+ Sbjct: 5 IFHVDVNSAFLSWTAVKKLKEEPESVDLRTIPSAIGGDVSKRHGVITACSIPAKKQGVRT 64 Query: 56 AMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 P AL+ CP L L P F Y+E S EI +Y +E +S+DEAYLD+T + Sbjct: 65 GEPVMRALEKCPELQLFPSDFKTYREYSAKFIEILKKYALVVEQVSIDEAYLDMTGT--- 121 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 +A++I+ I+ L T + G++ VK LAK+ASD KP + P E+ + Sbjct: 122 -DEPVSMAEKIKAEIYESLGFTVNIGISTVKLLAKMASDFEKPYKVHTLFPKEIKEKMWK 180 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDV 234 LP+ K+ G G ++ KL +G++T GD D +L G K G + E S G V Sbjct: 181 LPIEKLHGCGYRTSEKLRNIGVKTIGDAAALDKKLLCSLLGEKSGEYIHESSNGRGSDIV 240 Query: 235 NSER-LRKSVGVERTMAEDIH---HWSECEAIIERLYPELERRLAKVKPD---LLIARQG 287 + ER KS E T+ DI + E +I+ L + +RL K + + ++ + Sbjct: 241 SGEREAAKSYSNETTLPYDIRVSTYDKEMPEVIKWLSESVSKRLKKDGAEGYTISVSAKT 300 Query: 288 VKLKFDDFQQTTQEHV--WPRLNKADLIATARKTWDER---RGGRGVRLVGLHVTLLDPQ 342 K Q T E + + K + + E+ G G+RLVG+ V+ L Sbjct: 301 SSFKRRSKQTTLVESINNAKEIEKVSISLMKELCFGEKGLFEGDEGIRLVGVGVSHLAEH 360 Query: 343 MERQL 347 +Q+ Sbjct: 361 ECKQM 365 >UniRef50_B2VS10 DNA polymerase IV n=3 Tax=Pleosporineae RepID=B2VS10_PYRTR Length = 878 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 146/295 (49%), Gaps = 18/295 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV ++ +P +D P + + I++ NYPAR +GV++ M Sbjct: 388 RYILHVDFDSFFAAVSLKKHPEYKDKPAVVAHGQGSGSEIASCNYPARTYGVKNGMWMKR 447 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD---------- 111 A +LCP L +LP F AY+E S ++ ++ +S+DEA +DV++ Sbjct: 448 AQELCPDLKILPYDFPAYEETSRAFYDVILSTGGLVQSVSIDEALVDVSNLCISVGGSDG 507 Query: 112 SVHCHGS-------ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 H GS A IA +R + + S G+ LAK+ KP GQ+ I Sbjct: 508 KAHSEGSVYREQAKANEIALNLRDEVRSRTGCNVSVGIGGNILLAKVGLRRAKPAGQYQI 567 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P E F+ L + +PGV KLE +G++ D+++ L++ G K G L+ Sbjct: 568 KPEEALDFIGQLQVQDLPGVAWSIGGKLEGLGIKLVKDIRELTKEKLIQTLGPKTGEKLY 627 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 E S+GID ++V + +RKSV E + + + I L EL++RL K K Sbjct: 628 EYSRGIDRQEVGEQVVRKSVSAEVNWGVRFENQEQADEFIASLCGELQKRLRKEK 682 >UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RF31_9FIRM Length = 413 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 146/277 (52%), Gaps = 4/277 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ +A +E P LR++ +A+GGS R R G+I N A++ GV++ Sbjct: 3 RVILHSDINHCYAQIEEMKFPQLREVCMAVGGSERSRHGIILAKNDKAKECGVKTGESLR 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L ++P ++ Y S ++EI+ Y+ ++E LDEA++DV++S GS Sbjct: 63 EAFVKCPQLCIIPPNYEEYVYYSEKVKEIYQAYSDKVESFGLDEAWIDVSESTKLFGSGY 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EI++ + +EL L+ S G++ K AK+ SDM K G IT L LP+ Sbjct: 123 EIATEIQKRVKDELGLSVSIGISYNKVFAKMGSDMKKNMGLVEITRTNFRDMLWPLPIEH 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VGK +A KL + T G++ + V L + FGK G ++W + G D +V N + Sbjct: 183 LFYVGKATAKKLRQYSIVTIGELAQLPRVWLKEHFGKMGELVWWFANGQDISEVAFHNQK 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 KS+G T D+ + E + + L + RL Sbjct: 243 EEVKSIGNGITTPRDLCTFEEAKIVFYVLAESVASRL 279 >UniRef50_B1ZN03 DNA polymerase IV n=2 Tax=Opitutaceae RepID=DPO4_OPITP Length = 392 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+D D FF + E+ P LR A+GG RER G+IS+A+Y AR GV + MPT AL Sbjct: 6 IVHLDADAFFVSCELALKPELRGTKCAVGG-RER-GIISSASYEARACGVYTPMPTTRAL 63 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGSATLI 122 K+CP L +LP Y S + E+ T ++ S+DE YLD+ Sbjct: 64 KVCPDLIMLPHTGGLYSRVSRQMFELCETLTPLVQRNSIDEGYLDLGPCGFKTSAEIEQA 123 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA-FLQTLPLAKI 181 ++ I +LQ+TAS G+A K +A+IAS + KP G FV+ P+ A FL LP+ K+ Sbjct: 124 VHGLQHKIEQQLQITASFGLAVNKLVAQIASKLRKPKG-FVVVPSGTEAEFLAPLPIGKL 182 Query: 182 PGVGKVSAAKLEA-MGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL- 239 PGVG + +L G++ D+ L FG R + + + GID+R V +E Sbjct: 183 PGVGPKTEERLVGRHGIKLVRDLLARGEAELEAIFGDGWREMRDGALGIDDRPVETEHED 242 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR-QGVKLKFDDFQQT 298 KS + T EDI ++E E +++R+ EL L K++ D R VK+++ DF Q Sbjct: 243 AKSYSQQETFDEDIASFAEIERVVKRMIDEL---LPKIREDGKRVRTMTVKVRYPDFSQE 299 Query: 299 TQ 300 + Sbjct: 300 SH 301 >UniRef50_A9NFG9 DNA polymerase IV n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFG9_ACHLI Length = 383 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/306 (33%), Positives = 159/306 (51%), Gaps = 16/306 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGG-SRERRGVISTANYPARKFGVRSAMPTGMA 62 I H+D++ F+A M P L+ +GG S + RGV+STA+Y ARK+G+ + M A Sbjct: 22 IFHIDLNAFYATCAMIKEPHLKHRVFVVGGQSSQPRGVVSTASYKARKYGIHAGMSMLDA 81 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGSATL 121 L P L ++P F Y+E SN E+ Y+ + S+DEA+LD+T S H Sbjct: 82 LNKFPRLLIVPVDFKFYREMSNKFMEVLDAYSDLVLQASIDEAFLDMTKASEEIH--PIK 139 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A++I++ + ++ QL S G+AP FLAK+ASDM KP G V+ +V L L + I Sbjct: 140 LAKKIQKELVDKYQLPTSIGIAPTLFLAKMASDMKKPLGITVLRKRDVEKLLYPLSVTDI 199 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQ------KCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 G+GK + KL A+G+ T D K VM + + F + S + D + Sbjct: 200 YGIGKQTYPKLMALGINTIKDFMDLSNLPKITRVMKEETYYSFREYILGNSSNV--VDPD 257 Query: 236 SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKP-DLLIARQGVKLKFDD 294 RL KS+ E T ++ E I++ + +L+ L ++K ++L G KLK D Sbjct: 258 KYRLPKSISAETTFNTNM---DEPSVILDIIMSQLDESLVRLKKYNMLTKTVGFKLKSSD 314 Query: 295 FQQTTQ 300 F+ T+ Sbjct: 315 FKSITR 320 >UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteria RepID=A6NU31_9BACE Length = 414 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 144/280 (51%), Gaps = 7/280 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDI--PIAIGGSRE-RRGVISTANYPARKFGVRSAMP 58 R I+H D++ F+A+VE+ P LR+ P+A+ G E R G+I N PA+ GV++A Sbjct: 3 RTILHCDLNSFYASVELLSLPELRESGKPVAVCGDPESRHGIILAKNEPAKAMGVKTAET 62 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HG 117 A + CP L LLP D Y++ S + I+ R+T +EP S+DE++LD+T S+H G Sbjct: 63 IWQARQKCPDLVLLPAHRDQYRKYSRIVNAIYDRFTDLVEPFSIDESWLDITGSMHLWGG 122 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 IA IR+T+ E LT S GV+ K AK+ SD KP+ VIT L LP Sbjct: 123 DGKAIADRIRETVKAETGLTVSVGVSFNKVFAKMGSDYKKPDATTVITRENFRQLLWPLP 182 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + + VG +A L G++T GD+ + D L+ GK G L + G + V Sbjct: 183 VTDLLFVGGAAAKVLRGYGVQTIGDLARFDPQALVTILGKQGAALHSYAAGTEHEPVIPA 242 Query: 238 R---LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 R KSVG T ++ + A + L E+ RL Sbjct: 243 RDLPPPKSVGSGLTFRRNLLGLEDVRAGLSALSDEVAARL 282 >UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiales RepID=A9KLV9_CLOPH Length = 432 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 138/236 (58%), Gaps = 8/236 (3%) Query: 4 IIHVDMDCFFAAVE-------MRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRS 55 H+D++ F + E + ++ LR+IP IGG +E R G++ + A+K + + Sbjct: 19 FFHIDVNSAFLSWEAAYRLHVLGESVDLREIPSVIGGDKENRHGIVLAKSTSAKKLKIHT 78 Query: 56 AMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 G A++ CP+L ++P + Y +AS + EI R++ ++E S+DEA++D++ S Sbjct: 79 GEALGAAVQKCPNLVIIPPNYQRYVKASKSLMEILHRFSPKVEQYSIDEAFVDMSGSELL 138 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 +G ++A ++ I EL+ T + GV+ K LAK+A ++ KPN + P E+P + Sbjct: 139 YGGPVIVANNLKDLIEEELKFTVNIGVSSNKLLAKMAGELKKPNLVHTMFPEEIPKKMWP 198 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDE 231 LP+ ++ VG+ + KL +G++T G++ + D+ +L FGK+G +L++ S GIDE Sbjct: 199 LPVGELFFVGRATEKKLFNLGIKTIGELAQTDVKILKAHFGKYGEVLYQFSHGIDE 254 >UniRef50_UPI0000DB6FEF PREDICTED: similar to DNApol- CG7602-PA, isoform A n=1 Tax=Apis mellifera RepID=UPI0000DB6FEF Length = 540 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 147/288 (51%), Gaps = 47/288 (16%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIH+D+DCF+A VEM +P L + P+ + +++ ++ T+NY AR++G++ M Sbjct: 14 RTIIHIDVDCFYAQVEMLRHPELENKPLGV----QQKNMVVTSNYIAREYGIKKCMSVQE 69 Query: 62 ALKLCPHLTLLPGR-FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------ 114 AL+LCP L L+ G Y+ S I EI ++T +E L D+ ++DVT V Sbjct: 70 ALRLCPGLALVNGEDLTNYRHFSTKILEILHQFTPLVERLGFDDNFMDVTSIVQKYMNSG 129 Query: 115 -------------------------------CHGS---ATLIAQEIRQTIFNELQLTASA 140 CH A+ IA EIR+ I+ +L +T SA Sbjct: 130 NNSELNINISMEDENPVGEIFGASEEECPCGCHARLIIASKIAAEIRERIYKDLHVTCSA 189 Query: 141 GVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL-PLAKIPGVGKVSAAKLEAMGLRT 199 G+A K LAK+ ++KPN Q +I P P L + ++KIPGVG+ + L + ++T Sbjct: 190 GIAHNKLLAKLVGSLHKPNQQTLIFPCSAPMLLSNIGSVSKIPGVGQKTTQLLMSNNIKT 249 Query: 200 CGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVE 246 D++K L L + G R L + ++GIDE V ++S+G+E Sbjct: 250 IDDLRKTSLETLEMKIGIDLARKLKDNAEGIDETVVKPTGKKQSIGLE 297 >UniRef50_C7MBE5 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBE5_BRAFD Length = 422 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 111/342 (32%), Positives = 176/342 (51%), Gaps = 8/342 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFA++E+RD+P L +P+ +GG+ R V++ A+YPAR G+RSAMP A Sbjct: 16 ILHLDMDAFFASIEVRDDPGLEGLPVVVGGAGARG-VVAAASYPARTRGIRSAMPMASAR 74 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +L P L ++P R D Y++ S + ++ + E +S+DEA+LDV + G IA Sbjct: 75 RLAPDLVIVPPRIDHYRQVSAQVMQLLGDVVAETEQISVDEAFLDVRGARRLFGPPEQIA 134 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 Q +R+ I EL L +S G + + +AKIAS KP+G ++ FL L +A I G Sbjct: 135 QLLRRRIREELGLPSSVGGSVSRAVAKIASAQAKPDGMLIVPAERTAEFLAPLSVAVISG 194 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG + L +G+RT G +++ L + G + + G D + +S+ Sbjct: 195 VGPKAQEALARIGVRTIGQLREIPRSTLARALGPRAPEIAALADGSDRTGLGHRARDRSL 254 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV-KLKFDDFQQTTQEH 302 G ERT ED+ E I + ++ R+L + +AR V KL+ D T+ Sbjct: 255 GTERTWDEDLTDPDEVRRRITTMADDVARQLRRSG---FVARTVVLKLRAPDGTTLTRSS 311 Query: 303 VW--PRLNKADLIATARKTWD-ERRGGRGVRLVGLHVTLLDP 341 P + L + W+ ER +RL G+ V+ L+P Sbjct: 312 TMDQPTASGERLRSQVIPLWERERPAMPRLRLAGVRVSHLEP 353 >UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFE4_ANADF Length = 459 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 105/333 (31%), Positives = 154/333 (46%), Gaps = 38/333 (11%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 +I +D+D FF +VE +P L P+ +GG RGV++ A+Y R+ GV+S M A Sbjct: 17 RICCLDLDTFFVSVERLLDPTLEGKPVVVGGKPGSRGVVTAASYEVRRLGVKSGMSLFEA 76 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 K P+ LP R D Y + +REI R+ + S+DE YLD + + SA Sbjct: 77 GKRAPNAIYLPTRHDVYGTYAERVREIARRFAPTVRVASIDEMYLDFSGCERLYRSAGAA 136 Query: 123 AQ-----------------EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT 165 + ++ IF+EL L +SAGVA K +AK+AS + KP G ++ Sbjct: 137 RENGAEDRAGDAIIEGAVLQLTTAIFDELGLPSSAGVATSKVVAKVASALAKPRGVMLVP 196 Query: 166 PAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWER 225 A L LP+ PG+G V+ AKL A G +T G V + L L FG + + Sbjct: 197 AGVERAVLAPLPVRSFPGIGPVAEAKLHAAGYQTLGAVAEASLADLQTIFGAWAASISRG 256 Query: 226 SQGIDERDVNSER-----------LRKSVGVERTMAEDIHHWSECEAII----ERLYPEL 270 QG+ D+ ER S+ ERT ED+ + EA++ ER+ Sbjct: 257 VQGLGSGDLCRERPAFAEHDPEGETVGSISNERTFREDVTDPASIEAVLCGLCERVCWRA 316 Query: 271 ERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 RR K + L KL++ DF T+ H Sbjct: 317 RRRHVKARTVTL------KLRYADFHTLTRSHT 343 >UniRef50_B7QCT1 Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ixodes scapularis RepID=B7QCT1_IXOSC Length = 904 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 31/302 (10%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAI------------------------GGSRERRG 39 ++H+DMDCFF +V +R P L+ P+A+ G + +G Sbjct: 259 LMHIDMDCFFVSVGLRSRPHLKGKPVAVCHGKNGGIQPSSSHSRASDVPGTSGSGADGKG 318 Query: 40 VIS-----TANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYT 94 ++S + +Y AR GVRS M G A +LCP+L +P F++Y E S + + + YT Sbjct: 319 LMSMSEVASCSYEARDAGVRSGMFLGRAKQLCPNLVAIPYEFESYSEVSKILYDTVASYT 378 Query: 95 SRIEPLSLDEAYLDVTDSVH-CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIAS 153 IE +S DE Y DVT + + A +R+ I + TAS G+ P A++A+ Sbjct: 379 LDIEAVSCDELYADVTKVLQEAECTPNDFASFLRKEIEEKTCCTASVGLGPNMLAARVAN 438 Query: 154 DMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLK 213 KPNG ++ +E+ F + + + +PGVG ++L MG+ TC +Q + L Sbjct: 439 RSAKPNGHRFVSTSELLEFFKAVAVKHLPGVGYRLQSQLTDMGIETCEQLQAVSMETLKS 498 Query: 214 RFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELER 272 +FG K G +L++ ++G D++ + ++RKSV E ++ I +L E+E+ Sbjct: 499 KFGVKTGTLLFQHARGSDDKVLQFNKVRKSVSAEVNYGIRFKEANDMNKFIGQLSEEVEK 558 Query: 273 RL 274 RL Sbjct: 559 RL 560 >UniRef50_Q2LSC9 Nucleotidyltransferase/DNA polymerase protein n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LSC9_SYNAS Length = 435 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 101/312 (32%), Positives = 153/312 (49%), Gaps = 17/312 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+D D FF + E +P LR PI GG R G+++ A+Y A+K GV +P A Sbjct: 15 ILHIDGDAFFTSCEEAIHPELRGKPIIAGGER---GIVACASYAAKKQGVMRGVPLHQAR 71 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSATLI 122 K+CP L +LP ++ Y S + + R+T ++E S+DEA+ D+T S I Sbjct: 72 KMCPGLVILPSDYETYSLFSRRMFNVMRRFTPQVEEYSIDEAFADITGMRRPLRASYETI 131 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A I+ I EL +T S G++ K LAK+AS KPNG I + +L+ LP+ KI Sbjct: 132 AVNIKNEIARELGITVSVGLSITKVLAKVASKHRKPNGFTCIPGKSIAIYLEHLPVEKIW 191 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 G+G +A+ L MG+RT + + V++ KRF K G +W +G V +E Sbjct: 192 GIGHATASYLHKMGVRTALEFARLPEVLVKKRFTKPGVEIWRELRGDSVYPVCAEEKSLY 251 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKV-----KPDLLIARQGVKLKFDDFQQ 297 + +T +S + L+ L R L + L +R LK +DF Sbjct: 252 ASISKTKT-----FSPASGDADYLFAHLMRNLESACIKARRYHLAASRIAAFLKRNDFSY 306 Query: 298 TTQEHVWPRLNK 309 +E RLN+ Sbjct: 307 AGRE---IRLNR 315 >UniRef50_A4YEC1 DNA polymerase IV n=18 Tax=Sulfolobaceae RepID=DPO4_METS5 Length = 349 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 119/203 (58%), Gaps = 3/203 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAI---GGSRERRGVISTANYPARKFGVRSAMPTG 60 ++ VD D FFA VE NP+L+ P+ + G + G ++T+NY ARK G+++ MP Sbjct: 3 VLFVDFDYFFAQVEEILNPSLKGKPVVVCVYSGRTKDSGAVATSNYEARKLGIKAGMPII 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A ++ LP R + Y++ S + I S Y ++E S+DEAYLD+T V A Sbjct: 63 KAKEIGKDAVFLPMRKEVYQQVSRRVMNIISGYGDKLEIASIDEAYLDITRRVKDFDEAK 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A++++ + + +L + G+ P K +AKI +DMNKP+G +I P EV FL L ++K Sbjct: 123 ELARKLKAEVLEKERLRVTVGIGPNKVVAKIIADMNKPDGLGIIYPEEVKDFLYNLDISK 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDV 203 +PGVGK++ L +G+ GDV Sbjct: 183 VPGVGKITEEILRKVGINRLGDV 205 >UniRef50_A4RZX2 Predicted protein (Fragment) n=2 Tax=Ostreococcus RepID=A4RZX2_OSTLU Length = 427 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 124/214 (57%), Gaps = 6/214 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RK + VDMD F+AA E +PAL+ +P+ + V++TANY ARK+GVR+AMP + Sbjct: 86 RKWLVVDMDGFYAACEELYDPALKSVPVGVAAGPS--SVLTTANYVARKYGVRAAMPGFI 143 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT- 120 A KLCP L + F Y +ASN R +F++Y SLDEAY++VT+ H + Sbjct: 144 AKKLCPDLVFVKPDFKKYVKASNESRGVFAQYNPDYIAGSLDEAYIEVTEYCEKHDTTME 203 Query: 121 LIAQEIRQTIFNEL-QLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLP 177 IA+EIR + LT S G + LAK+ SD NKPNGQ+++ T ++ FL+ LP Sbjct: 204 AIAEEIRSKVKEATGGLTCSVGGGCSRRLAKVCSDFNKPNGQYILGTTRDDILKFLRDLP 263 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVML 211 + K+ G+GK L ++TCGD+ ML Sbjct: 264 VRKMYGIGKTLERILNEFDIKTCGDLLAKRATML 297 >UniRef50_B0R4P0 DNA polymerase IV n=7 Tax=Halobacteriaceae RepID=DPO4_HALS3 Length = 411 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 112/351 (31%), Positives = 160/351 (45%), Gaps = 15/351 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR---GVISTANYPARKFGVRSAMP 58 R ++HVDMDCF+A+ E R PALR P+ +G E G ++TA+Y AR++GV SA Sbjct: 16 RIVVHVDMDCFYASCERRREPALRGAPVVVGMGYEPDQTVGAVATASYEAREYGVESAQA 75 Query: 59 TGMALKLCPHLTLLPGRFDA----------YKEASNHIREIFSRYTSRIEPLSLDEAYLD 108 AL+ P P A Y+ S + EI + +S+DEAYLD Sbjct: 76 ISAALERLPRKADAPDASAAGYYRPVDMAYYESVSESVSEILHGLGDPVREVSIDEAYLD 135 Query: 109 VTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE 168 VTD +A + I+Q I + + AS G+AP AK+ASD KP+G V+ P Sbjct: 136 VTDRTAWDVAAGF-GRHIKQRIARSVGVPASVGIAPDMSTAKLASDHEKPDGLVVVPPES 194 Query: 169 VPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQG 228 V +FL L +A + GVG V A L G+ T G++ D +L FG+ GR R++G Sbjct: 195 VQSFLAPLDVADLHGVGPVHARALRERGIETVGELADADPYVLEAAFGERGREFHRRARG 254 Query: 229 IDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV 288 D R V KS+ E + + L + R ++ V Sbjct: 255 ADSRPVEPRGKPKSLSRESSFDGATESFDRVREQAAALSGAVADRASRTNASYRTIGVKV 314 Query: 289 KLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL 339 D Q + P + A L A ++ DE G VR VG+ V+ L Sbjct: 315 VTPPYDVQTRAESLPGPVDDPALLEAVSQSLLDEFEGA-AVRKVGVRVSNL 364 >UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM Length = 415 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 110/341 (32%), Positives = 169/341 (49%), Gaps = 14/341 (4%) Query: 5 IHVDMDCFF----AAVEMRDNPAL--RDIPIAIGGSRERR-GVISTANYPARKFGVRSAM 57 HVD++ F A ++R L R +P A+GG E+R GV+ + PA+KFGVR+ Sbjct: 6 FHVDVNSAFLSWSALKKLRAGETLDLRTVPSAVGGDEEKRHGVVLAKSSPAKKFGVRTGE 65 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 A CP L + P FD Y + S + I YT +E S+DEA+LD+T + G Sbjct: 66 SLFSARLKCPELIVTPPDFDFYVQNSKALIAILRDYTPDVEQYSIDEAFLDMTGTEALFG 125 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 +A IR + EL T + GVA + LAK+ASD KP+ + P EVP + LP Sbjct: 126 PPLTVAHTIRNRVREELGFTVNIGVASNRLLAKMASDFEKPDKVHTLFPEEVPDKMWPLP 185 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + + GVG + +L G+ T GD+ + + +++ FG G LW + G + V + Sbjct: 186 VGSLFGVGPSAVKRLNQCGIYTIGDLARTERRVIVGIFGTRGDTLWNYANGREADPVTKQ 245 Query: 238 RLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR-QGVKLKFDDF 295 R + G T+ +D+ + +A + L + RRL + D AR V+L + F Sbjct: 246 TTRDNTYGNSVTLPQDLTRPEQADATLLALCDSVGRRL---RTDGKTARVVTVQLVDNAF 302 Query: 296 QQTTQEHVWPR-LNKAD-LIATARKTWDERRGGRGVRLVGL 334 ++T+ + P N D L A + + GR VRLVG+ Sbjct: 303 RRTSHQRTLPDPTNSTDRLYEVALQLMRQMWPGRPVRLVGV 343 >UniRef50_Q2SS65 ImpB/MucB/SamB family protein n=3 Tax=Mycoplasma mycoides group RepID=Q2SS65_MYCCT Length = 408 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/312 (31%), Positives = 161/312 (51%), Gaps = 17/312 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + IIH+DMD FFA+ +P L++ PI I S ++ +IS A+Y ARK+ +++AMP Sbjct: 4 KTIIHIDMDAFFASCMQLKHPELKNKPIVISNSFDK-SIISAASYEARKYNIKAAMPLFK 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIRE-IFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KL P + + + S+ I E I + YT++IE S+DEAYLDV+D + + Sbjct: 63 AKKLYPKIISIRADMNFISNISSQIWEFIKTNYTNKIEIASIDEAYLDVSDLI-LNIDVL 121 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+ I++ I+N LT S G+ +F AK+++ +NKPNG + T + +P+ K Sbjct: 122 QLAKNIQKDIYNHFNLTCSLGIGFNRFSAKMSTSLNKPNGITLTTITNFKHNIWPIPINK 181 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN---SE 237 + GVG+ S L ++T D+ + + K G +L + G+ +N SE Sbjct: 182 MYGVGESSIKILNHTKIKTIKDLALLSDAQIYELLNKKGLVLKNEALGLGSDYINYLSSE 241 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK------ 291 KS+ E T+ I+ + E E II L + +L VK LL +K++ Sbjct: 242 --YKSISKETTLNTPIYQYDEIETIILNLSKFITNKL--VKNQLLCKTIEIKIRYKIDEK 297 Query: 292 -FDDFQQTTQEH 302 FD + T +H Sbjct: 298 IFDKQKHLTSKH 309 >UniRef50_A7E7M1 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7E7M1_SCLS1 Length = 1255 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 138/291 (47%), Gaps = 18/291 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF AV ++ P D P + I++ NYPAR FGV++ M Sbjct: 435 RYIMHVDFDSFFCAVSLKSAPEYFDKPAVVAHGNGTGSEIASCNYPARVFGVKNGMWMKN 494 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS--- 118 A+KLCP + +LP F AY+EAS E + +S+DEA++D+T G Sbjct: 495 AIKLCPDIKVLPYDFPAYEEASKAFYEAILDVGGIFQSVSVDEAFVDITSLCLAAGGTDG 554 Query: 119 --------------ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A I +R+ I + S G+ LAK+A KP GQ+ I Sbjct: 555 VGIREGSIWREQERAEEIGNALRKVIREKTGCNVSVGIGGNILLAKVALRKAKPAGQYQI 614 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P EV F+ L + +PGV KLE +G++ DV++ L+ G K G +W Sbjct: 615 KPEEVLDFVGELDVQNLPGVAYSIGGKLEEIGVKFVKDVRQLSKDRLMTVLGPKTGEKIW 674 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 + S+GID +V + +RKSV E E E ++ L EL+RRL Sbjct: 675 DYSRGIDRAEVGEQVVRKSVSAEVNWGIRFISQVEAEEFVQNLCIELQRRL 725 >UniRef50_C3WGR0 DNA polymerase IV n=6 Tax=Fusobacterium RepID=C3WGR0_9FUSO Length = 352 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 10/301 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H DMD F+A++E+ NP L++ P+ +G +++TA+Y ARK+G+ SAM Sbjct: 3 RIIMHYDMDAFYASIEINRNPKLKNKPLVVG-----ENIVTTASYEARKYGIHSAMKVSD 57 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCP L +P Y SN I + + T+++E ++ DE Y+D+T V Sbjct: 58 AKLLCPKLIAIPVDKKEYIRISNEIHNLILKITNKVEFIATDEGYIDLTGIVKPENKKQF 117 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVPAFLQTLPLAK 180 A + ++ I LT S G+ K AKIASD+NKP G ++ + ++ + Sbjct: 118 -ALKFKERIKELTNLTCSVGIGFNKLSAKIASDINKPFGIYIFENEKDFVEYISDKKIKI 176 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERL 239 IPGVGK L+ + DV K L L+K++GK G L+ +GI+ +V ER Sbjct: 177 IPGVGKKFFEILKHDKIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGINHDEVEYERE 236 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 S+G E T + + SE E L+ +RL +K ++ VK+++ F+ T Sbjct: 237 IHSIGNEETYSIPLQTNSELEREFNSLFEYTYQRL--LKNNVFSQSVTVKIRYSSFKTYT 294 Query: 300 Q 300 + Sbjct: 295 K 295 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=... 418 e-115 UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms R... 413 e-114 UniRef50_B0TQD1 DNA polymerase IV n=7 Tax=Bacteria RepID=DPO4_SHEHH 411 e-113 UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_L... 409 e-113 UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms Re... 406 e-112 UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_... 404 e-111 UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 403 e-111 UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobac... 403 e-111 UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_H... 401 e-110 UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidet... 401 e-110 UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria R... 401 e-110 UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4... 400 e-110 UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gam... 399 e-110 UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_P... 399 e-109 UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. ... 398 e-109 UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_C... 398 e-109 UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibri... 398 e-109 UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alke... 397 e-109 UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatel... 397 e-109 UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42... 396 e-109 UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae b... 393 e-108 UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter... 393 e-108 UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_... 393 e-108 UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacte... 391 e-107 UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter... 391 e-107 UniRef50_A4BJD8 DNA polymerase IV n=1 Tax=Reinekea blandensis ME... 391 e-107 UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacter... 391 e-107 UniRef50_A0YE03 DNA polymerase IV n=2 Tax=Gammaproteobacteria Re... 390 e-107 UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae Rep... 389 e-106 UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 388 e-106 UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella c... 388 e-106 UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomy... 387 e-106 UniRef50_B6J224 DNA polymerase IV n=5 Tax=Coxiella burnetii RepI... 387 e-106 UniRef50_A3NBC4 DNA polymerase IV n=15 Tax=pseudomallei group Re... 387 e-106 UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteob... 385 e-105 UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 385 e-105 UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalob... 384 e-105 UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteri... 384 e-105 UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychroph... 384 e-105 UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=u... 384 e-105 UniRef50_B0TZS5 DNA polymerase IV n=14 Tax=Francisella RepID=DPO... 382 e-104 UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=... 381 e-104 UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 381 e-104 UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermo... 380 e-104 UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DP... 380 e-104 UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 154... 380 e-104 UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damag... 380 e-104 UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcu... 380 e-104 UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria Re... 380 e-104 UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaero... 378 e-103 UniRef50_Q3II35 DNA polymerase IV n=3 Tax=Alteromonadales RepID=... 377 e-103 UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q... 377 e-103 UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiri... 377 e-103 UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicro... 376 e-103 UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=... 376 e-103 UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus ... 375 e-102 UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica... 375 e-102 UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales R... 375 e-102 UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 375 e-102 UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_L... 374 e-102 UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 374 e-102 UniRef50_Q1N612 DNA polymerase IV n=1 Tax=Bermanella marisrubri ... 373 e-102 UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=... 372 e-102 UniRef50_C5BNY2 DNA polymerase IV n=1 Tax=Teredinibacter turnera... 370 e-101 UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class... 370 e-101 UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 369 e-101 UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=... 368 e-100 UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales... 367 e-100 UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli ... 367 e-100 UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdema... 366 e-100 UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral t... 366 e-100 UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2... 363 5e-99 UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=... 362 1e-98 UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomyceta... 360 4e-98 UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomyceta... 360 4e-98 UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermoth... 360 4e-98 UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2... 358 1e-97 UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class... 357 2e-97 UniRef50_C5RD20 DNA-directed DNA polymerase n=1 Tax=Weissella pa... 356 5e-97 UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=D... 356 7e-97 UniRef50_Q2LU75 DNA polymerase IV n=1 Tax=Syntrophus aciditrophi... 356 9e-97 UniRef50_A6DIV6 DNA polymerase IV n=1 Tax=Lentisphaera araneosa ... 356 1e-96 UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collins... 355 1e-96 UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonel... 355 1e-96 UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospiri... 355 2e-96 UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex de... 354 3e-96 UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved i... 354 4e-96 UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis... 353 4e-96 UniRef50_D1JEL0 DNA polymerase IV n=1 Tax=uncultured archaeon Re... 353 6e-96 UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus M... 353 6e-96 UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia ext... 353 7e-96 UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomyceta... 352 1e-95 UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium o... 352 1e-95 UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiale... 351 2e-95 UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteob... 350 4e-95 UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_... 350 5e-95 UniRef50_C0ZB00 DNA polymerase IV n=1 Tax=Brevibacillus brevis N... 350 6e-95 UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerof... 350 6e-95 UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomyceta... 349 8e-95 UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0... 348 2e-94 UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus... 348 2e-94 UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacil... 348 2e-94 UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella p... 348 2e-94 UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclass... 347 3e-94 UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia deni... 346 6e-94 UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=V... 346 7e-94 UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_S... 346 8e-94 UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved i... 342 8e-93 UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiop... 342 1e-92 UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved i... 342 1e-92 UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO... 342 1e-92 UniRef50_A9BNM1 DNA-directed DNA polymerase n=34 Tax=Betaproteob... 339 7e-92 UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaprote... 339 9e-92 UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_T... 339 1e-91 UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostri... 337 3e-91 UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteri... 337 3e-91 UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ... 337 4e-91 UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidete... 337 4e-91 UniRef50_B1MZW7 Nucleotidyltransferase/DNA polymerase involved i... 337 5e-91 UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter h... 336 7e-91 UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX... 335 1e-90 UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2... 335 2e-90 UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax... 334 2e-90 UniRef50_B3WC63 DNA-damage-inducible protein P n=8 Tax=Lactobaci... 334 2e-90 UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranu... 334 3e-90 UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostri... 334 3e-90 UniRef50_B9X9L4 DNA-directed DNA polymerase n=3 Tax=Verrucomicro... 333 6e-90 UniRef50_A7REV5 Predicted protein (Fragment) n=1 Tax=Nematostell... 333 6e-90 UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesti... 333 6e-90 UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobac... 333 7e-90 UniRef50_B9HS71 Predicted protein n=1 Tax=Populus trichocarpa Re... 333 7e-90 UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealy... 333 7e-90 UniRef50_UPI0001982DE6 PREDICTED: hypothetical protein n=1 Tax=V... 332 8e-90 UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DP... 332 9e-90 UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobaci... 332 1e-89 UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia R... 332 1e-89 UniRef50_Q654Y6 Os06g0691000 protein n=7 Tax=Poaceae RepID=Q654Y... 331 2e-89 UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved i... 330 3e-89 UniRef50_Q47E66 UMUC-like DNA-repair protein n=2 Tax=Betaproteob... 330 6e-89 UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevi... 329 8e-89 UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutyl... 329 1e-88 UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collins... 327 3e-88 UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A... 327 4e-88 UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteri... 327 5e-88 UniRef50_UPI000180C22E PREDICTED: similar to polymerase (DNA dir... 326 6e-88 UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Rosebur... 326 6e-88 UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidoba... 326 9e-88 UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9... 326 9e-88 UniRef50_Q5QZ82 DinP n=2 Tax=Idiomarina RepID=Q5QZ82_IDILO 325 1e-87 UniRef50_D1BHR1 Nucleotidyltransferase/DNA polymerase involved i... 325 1e-87 UniRef50_Q9UBZ9 DNA repair protein REV1 n=27 Tax=Tetrapoda RepID... 325 2e-87 UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria Re... 324 2e-87 UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicu... 324 2e-87 UniRef50_D1Y4D1 DNA polymerase IV n=1 Tax=Pyramidobacter piscole... 324 3e-87 UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=... 322 1e-86 UniRef50_C3Y6K1 Putative uncharacterized protein (Fragment) n=1 ... 322 1e-86 UniRef50_A5Z8E0 Putative uncharacterized protein n=10 Tax=Clostr... 322 2e-86 UniRef50_C3PHE2 DNA polymerase IV n=10 Tax=Corynebacterineae Rep... 321 2e-86 UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteri... 321 2e-86 UniRef50_Q2L7B2 REV1 n=7 Tax=Sordariomycetes RepID=Q2L7B2_NEUCR 320 5e-86 UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacte... 320 6e-86 UniRef50_A3EWL3 Polymerase ATREV1-1105 n=8 Tax=rosids RepID=A3EW... 319 1e-85 UniRef50_UPI00016E76F4 UPI00016E76F4 related cluster n=1 Tax=Tak... 317 3e-85 UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothri... 317 3e-85 UniRef50_C5JS23 DNA damage repair protein Mus42 n=2 Tax=Ajellomy... 317 3e-85 UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 317 3e-85 UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimal... 317 4e-85 UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42... 317 5e-85 UniRef50_B0MAH2 Putative uncharacterized protein n=1 Tax=Anaeros... 317 5e-85 UniRef50_UPI0001C32444 DNA-directed DNA polymerase n=1 Tax=Conex... 317 5e-85 UniRef50_C0S277 DNA polymerase IV n=5 Tax=Onygenales RepID=C0S27... 316 7e-85 UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaeroc... 315 2e-84 UniRef50_Q8TIW3 DNA polymerase IV n=4 Tax=Methanosarcinaceae Rep... 315 2e-84 UniRef50_C2FXW7 Possible DNA-directed DNA polymerase n=2 Tax=Sph... 315 2e-84 UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttle... 315 2e-84 UniRef50_B8GPZ5 DNA-directed DNA polymerase n=2 Tax=Gammaproteob... 315 2e-84 UniRef50_C4LI62 DNA polymerase IV n=1 Tax=Corynebacterium kroppe... 314 4e-84 UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bi... 314 4e-84 UniRef50_D2A3T9 Putative uncharacterized protein GLEAN_14950 n=1... 313 6e-84 UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus... 313 8e-84 UniRef50_Q03R40 Nucleotidyltransferase/DNA polymerase for DNA re... 312 8e-84 UniRef50_UPI000186DDA3 terminal deoxycytidyl transferase rev1, p... 312 9e-84 UniRef50_D1HMR5 Whole genome shotgun sequence of line PN40024, s... 312 1e-83 UniRef50_UPI0001B7B957 DinB1 protein n=3 Tax=Euteleostomi RepID=... 311 2e-83 UniRef50_A5EBX2 DNA polymerase IV (Pol IV 3) n=2 Tax=Bradyrhizob... 311 2e-83 UniRef50_A2QTI4 Contig An09c0050, complete genome n=9 Tax=Euroti... 310 3e-83 UniRef50_UPI0000D862D7 hypothetical protein CIMG_01093 n=1 Tax=C... 310 6e-83 UniRef50_D2R9L6 ImpB/MucB/SamB family protein n=1 Tax=Gardnerell... 309 8e-83 UniRef50_Q5Q9H0 Polymerase kappa isoform 9 n=3 Tax=Murinae RepID... 309 8e-83 UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_... 309 1e-82 UniRef50_B9LT67 UMUC domain protein DNA-repair protein n=3 Tax=H... 309 1e-82 UniRef50_C3WGR0 DNA polymerase IV n=6 Tax=Fusobacterium RepID=C3... 309 1e-82 UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium... 308 2e-82 UniRef50_B2VS10 DNA polymerase IV n=3 Tax=Pleosporineae RepID=B2... 308 2e-82 UniRef50_Q7Q6B2 AGAP005939-PA n=2 Tax=Culicidae RepID=Q7Q6B2_ANOGA 308 2e-82 UniRef50_C8V695 Deoxycytidyl transferase (Eurofung) n=2 Tax=Emer... 307 3e-82 UniRef50_A1SN18 DNA-directed DNA polymerase n=13 Tax=Actinomycet... 307 4e-82 UniRef50_B7AQS7 Putative uncharacterized protein n=1 Tax=Bactero... 307 4e-82 UniRef50_A4QFK8 DNA polymerase IV n=28 Tax=Actinomycetales RepID... 306 6e-82 UniRef50_B4MLB6 GK17515 n=1 Tax=Drosophila willistoni RepID=B4ML... 306 7e-82 UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium s... 306 7e-82 UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxoba... 306 7e-82 UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiale... 306 8e-82 UniRef50_A7E7M1 Putative uncharacterized protein n=2 Tax=Sclerot... 306 9e-82 UniRef50_C7DHN7 DNA-directed DNA polymerase n=1 Tax=Candidatus M... 305 1e-81 UniRef50_B0R4P0 DNA polymerase IV n=7 Tax=Halobacteriaceae RepID... 305 2e-81 UniRef50_A0QHM7 DNA polymerase IV 1 n=8 Tax=Corynebacterineae Re... 304 2e-81 UniRef50_Q6F1D8 DNA polymerase IV (PolIV) n=1 Tax=Mesoplasma flo... 304 2e-81 UniRef50_A2DLM9 ImpB/MucB/SamB family protein n=1 Tax=Trichomona... 304 3e-81 UniRef50_B6Q3Z2 DNA damage repair protein Mus42, putative n=5 Ta... 304 4e-81 UniRef50_C1A9Y5 DNA polymerase IV n=1 Tax=Gemmatimonas aurantiac... 303 6e-81 UniRef50_B6K5W3 DNA polymerase kappa n=2 Tax=cellular organisms ... 303 7e-81 UniRef50_A4VCZ3 DNA polymerase IV / kappa n=1 Tax=Tetrahymena th... 302 1e-80 UniRef50_Q29DW0 GA11465 n=3 Tax=Drosophila RepID=Q29DW0_DROPS 302 1e-80 UniRef50_A2FMN4 ImpB/MucB/SamB family protein n=1 Tax=Trichomona... 302 1e-80 UniRef50_Q2HFL9 Putative uncharacterized protein n=1 Tax=Chaetom... 302 1e-80 UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdema... 302 1e-80 UniRef50_A9V4K7 Predicted protein n=1 Tax=Monosiga brevicollis R... 302 2e-80 UniRef50_C8WGA6 DNA-directed DNA polymerase n=3 Tax=Bacteria Rep... 301 2e-80 UniRef50_B5Y6A2 DNA-directed DNA polymerase n=1 Tax=Coprothermob... 300 4e-80 UniRef50_B8M4C5 DNA-directed polymerase kappa, putative n=14 Tax... 300 4e-80 UniRef50_A9UNE7 GH11153p (Fragment) n=8 Tax=Drosophila RepID=A9U... 300 4e-80 UniRef50_D0NDK9 DNA repair protein REV1 n=1 Tax=Phytophthora inf... 300 6e-80 UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacte... 300 6e-80 UniRef50_B6Q7Y5 DNA-directed polymerase kappa, putative n=2 Tax=... 299 1e-79 UniRef50_B7QCT1 Terminal deoxycytidyl transferase rev1, putative... 297 3e-79 UniRef50_C1DYT2 Predicted protein (Fragment) n=2 Tax=Micromonas ... 297 3e-79 UniRef50_B5BUV5 DNA polymerase kappa n=2 Tax=Agaricales RepID=B5... 297 4e-79 UniRef50_B1AJ79 DNA polymerase IV n=15 Tax=Ureaplasma RepID=DPO4... 297 4e-79 UniRef50_O74944 DNA polymerase kappa n=1 Tax=Schizosaccharomyces... 297 5e-79 UniRef50_B2AY86 Predicted CDS Pa_1_10240 n=3 Tax=Sordariomycetes... 296 9e-79 UniRef50_A8PXZ2 Putative uncharacterized protein n=1 Tax=Malasse... 296 9e-79 UniRef50_P63988 DNA polymerase IV 2 n=20 Tax=Corynebacterineae R... 296 9e-79 UniRef50_C4G2M8 Putative uncharacterized protein n=1 Tax=Abiotro... 296 1e-78 UniRef50_A4RF27 Putative uncharacterized protein n=1 Tax=Magnapo... 295 1e-78 UniRef50_Q4P422 Putative uncharacterized protein n=1 Tax=Ustilag... 295 1e-78 UniRef50_B9XRF0 DNA polymerase III, alpha subunit n=1 Tax=bacter... 295 1e-78 UniRef50_A9A3A9 DNA polymerase IV n=6 Tax=Thaumarchaeota RepID=D... 295 2e-78 UniRef50_Q5K8U2 Putative uncharacterized protein n=3 Tax=Agarico... 295 2e-78 UniRef50_A9NFG9 DNA polymerase IV n=1 Tax=Acholeplasma laidlawii... 294 2e-78 UniRef50_C7MBE5 Nucleotidyltransferase/DNA polymerase involved i... 294 3e-78 UniRef50_UPI000180D06B PREDICTED: similar to GH15415 n=1 Tax=Cio... 294 4e-78 UniRef50_A0D236 Chromosome undetermined scaffold_35, whole genom... 294 5e-78 UniRef50_D2VFM3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 293 6e-78 UniRef50_C7N9E0 DNA-directed DNA polymerase n=5 Tax=Fusobacteria... 292 1e-77 UniRef50_Q7NAR2 UmuC/DinP-like n=1 Tax=Mycoplasma gallisepticum ... 292 1e-77 UniRef50_C1E418 Predicted protein (Fragment) n=2 Tax=Micromonas ... 292 2e-77 UniRef50_B2A4V8 DNA-directed DNA polymerase n=5 Tax=Clostridia R... 292 2e-77 UniRef50_Q8REB0 DNA polymerase IV n=8 Tax=Fusobacterium RepID=DP... 291 3e-77 UniRef50_C5CJ42 DNA-directed DNA polymerase n=1 Tax=Kosmotoga ol... 290 4e-77 Sequences not found previously or not previously below threshold: >UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=DPO4_SHEWM Length = 364 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 201/338 (59%), Positives = 249/338 (73%), Gaps = 1/338 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMDC+FAAVEMRD P LR PIA+GG +RRGVIST NY AR FGVRSAM +G Sbjct: 5 LRKIIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARAFGVRSAMASG 64 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLCP L L+PGR YKE S IR+IF+RYT IEPLSLDEAYLDVT+ C GSAT Sbjct: 65 YALKLCPDLILVPGRMSVYKEVSAQIRDIFARYTDLIEPLSLDEAYLDVTECKQCQGSAT 124 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIAQ IRQ IF LTASAG+APVKFLAK+ASD+NKPNGQ+VITP + +F+ TLPL K Sbjct: 125 LIAQAIRQEIFEVTGLTASAGIAPVKFLAKVASDLNKPNGQYVITPDMISSFITTLPLTK 184 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KLE +GL TCG++Q L++RFGKFG+IL ER+QGIDER ++ R R Sbjct: 185 IPGVGKVTGKKLEDIGLTTCGELQAYPKSELIERFGKFGKILIERAQGIDERAISPHRER 244 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVGVE T+A+DI+ +C ++ +L EL R+++ I +Q VKLKF+DF+QTT Sbjct: 245 KSVGVETTLAKDIYTLEQCHGVMPQLIQELGARMSRSAKGRSINKQVVKLKFNDFKQTTI 304 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTL 338 EH ++ ++ ER+ GRG+RL+G+ V L Sbjct: 305 EHRSDEMSVKLFYELLAQSL-ERQQGRGIRLLGVSVGL 341 >UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms RepID=DPO4_ACTPJ Length = 356 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 190/351 (54%), Positives = 237/351 (67%), Gaps = 4/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMDCF+AA+EMR+NPAL P+A+GGS E RGV++T NY ARKFG+ SAMPT Sbjct: 5 RKIIHIDMDCFYAAIEMRENPALIGKPVAVGGSVEGRGVLTTCNYEARKFGLHSAMPTAQ 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALK CP+L L+P YK S I +IF RYT +EPLSLDEAYLDVTD C GSAT Sbjct: 65 ALKRCPNLILVPVNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVTDCRQCSGSATW 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQEIR I+NEL LTASAG+AP+KFLAKI SD NKPNGQFVI+P + AF+ LPL KI Sbjct: 125 IAQEIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQFVISPENMTAFIYDLPLKKI 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ KL +GL TCGD+Q D + K FGKFG+ LWE S ID R + + R RK Sbjct: 185 PGVGKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQRLWEFSHAIDNRKIEANRPRK 244 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLL---IARQGVKLKFDDFQQT 298 S+ VE T+ DI H +E E I++ L+ +L RL + + + +KLKF DF QT Sbjct: 245 SLAVENTLPTDIWHLAEAEQIVDELFKKLVFRLQRNWGERSLQEFKKLAIKLKFGDFTQT 304 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T E L++ I ++ W +R R VRL+GL V ++++QL L Sbjct: 305 TLERTTDGLSRERFIELLQQVW-QRTNRRSVRLIGLSVHYPTEKVKKQLNL 354 >UniRef50_B0TQD1 DNA polymerase IV n=7 Tax=Bacteria RepID=DPO4_SHEHH Length = 358 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 202/338 (59%), Positives = 248/338 (73%), Gaps = 1/338 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+KIIHVDMDCF+AAVEMRD P LR PIA+GG +RRGVIST NY AR+FGVRSAM +G Sbjct: 1 MQKIIHVDMDCFYAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARQFGVRSAMASG 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLCP L L+PGR YKE SN IR +F RYT IEPLSLDEAYLDVT+S HC GSAT Sbjct: 61 YALKLCPDLILVPGRMQVYKEVSNQIRAVFERYTDLIEPLSLDEAYLDVTESSHCKGSAT 120 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A+ IR I E LTASAG+APVKFLAKIASD+NKPNGQ+VI P + F++TLPL K Sbjct: 121 LMAEAIRAEILAETGLTASAGIAPVKFLAKIASDLNKPNGQYVIRPEMIEEFVKTLPLIK 180 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+A KL +GL TC D+Q L++RFGKFG +L ERS+GID+R + R R Sbjct: 181 IPGVGKVTAKKLADLGLHTCSDIQAYPEPKLVERFGKFGSVLIERSKGIDKRAILPNRER 240 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVGVE T+A+DIH +C A++ +L EL R+++ D I +Q VKLKF+DF+QTT Sbjct: 241 KSVGVETTLAKDIHTLEQCRAVMPQLIQELGARVSRSAKDRAINKQVVKLKFEDFKQTTI 300 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTL 338 EH ++ +L + ER+ RG+RL+G+ V L Sbjct: 301 EHRSDEIS-VNLFYQLLEQAMERQHERGIRLLGVSVGL 337 >UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_LEGPL Length = 355 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 175/351 (49%), Positives = 232/351 (66%), Gaps = 2/351 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMDCF+AA+EMRD P L + PIA+GG + RGVI+T NY AR+FG+RSAMPT Sbjct: 4 IRKIIHIDMDCFYAAIEMRDFPELANKPIAVGGDAKHRGVIATCNYAARQFGIRSAMPTA 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLC L L P R D Y++ S +IR + + YT IEPLSLDEAYLDVT+S C GSAT Sbjct: 64 HALKLCRELILRPVRMDVYQKESQYIRSLLTEYTDLIEPLSLDEAYLDVTESTQCQGSAT 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EIR I+ QLTASAG+AP K LAKIASD +KPNGQ VI P +V AF+ LP+ K Sbjct: 124 WIAEEIRARIYQTRQLTASAGIAPNKSLAKIASDWHKPNGQMVIRPEDVSAFVLDLPVRK 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG KL A+ ++TC D+Q+ + LL++FG G+ L+E ++GID R VN ER+R Sbjct: 184 LFGVGPKMEEKLGALNIKTCADLQRYSIEYLLQKFGTMGQRLYELARGIDNRPVNPERIR 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ VE T +D+ + C A++ L LE R+ + I VKLKF+DFQQTT Sbjct: 244 KSISVEETYPKDLPNSEACLAVLPDLMARLEARIQRAGKISGIHNLFVKLKFNDFQQTTI 303 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 E V +++ L ++ + R G VRL+G+ + L + + L L Sbjct: 304 ERVMDKIDLIVLRQLIQEGFARR--GMPVRLLGIGIKLKQENTYQSVQLPL 352 >UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms RepID=A4CII2_9FLAO Length = 366 Score = 406 bits (1043), Expect = e-112, Method: Composition-based stats. Identities = 148/347 (42%), Positives = 208/347 (59%), Gaps = 5/347 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD FFA+VE RD P LR PIA+GG +RGV++ A+Y AR FGVRSAM Sbjct: 7 LRKIIHIDMDAFFASVEQRDQPELRGRPIAVGGG-AKRGVVAAASYEARTFGVRSAMSGV 65 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L + RFD Y+E S IR IF YT +EPLSLDEAYLDVT + SAT Sbjct: 66 QARRLCPELVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYLDVTANRKGMPSAT 125 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIA+EIR+ I E LTASAG++ KF+AK+ASD NKPNGQ + P +V FL++L + K Sbjct: 126 LIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPEDVQEFLESLEIRK 185 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKV+A K+ A+G+ T D+++ L FGK G + +G+ + V R+ Sbjct: 186 FHGVGKVTAEKMNALGIFTGADLRRQSEHFLTGHFGKSGHHYYRVVRGVHDSPVQPSRVP 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G ERT +E++ + ++ EL RRL + +K+++ DF T+ Sbjct: 246 KSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRT--RNRSGKTITLKIRYSDFSLQTR 303 Query: 301 EHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER 345 + ++A AR ++ VRL+G+ ++ LD + E+ Sbjct: 304 SRTLAEYIDSPERILAAARDLLYQQPLENSVRLLGISLSNLDTEKEK 350 >UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_CARHZ Length = 391 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 146/352 (41%), Positives = 195/352 (55%), Gaps = 6/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIHVDMD FFAAVE RDNP L+ P+ +GG RGV++ A+Y ARKFGVRSAM Sbjct: 4 RVIIHVDMDAFFAAVEQRDNPELKGKPVIVGGVPGERGVVAAASYEARKFGVRSAMSLWE 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH +PG Y+E S I IF YT +EP+SLDEAYLDVT S G Sbjct: 64 AARLCPHGIFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSLDEAYLDVTGSQKLFGPGAE 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I ++I++ IF E +LTAS GVAP KFLAK+AS++NKP+G + V FL LP+ + Sbjct: 124 IGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVREDNVLDFLAPLPVEML 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG+ +L MG++T D + L K+FG G+ L+ S+GID R+V ER+ K Sbjct: 184 WGVGEKMKERLNDMGIKTVQDFWELPEFFLRKKFGVLGQNLYYLSRGIDFREVIPERVPK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T+ +D + L + R L + VK++ F T+ Sbjct: 244 SLGKEITLQKDSSDVDYLLGKLLGLTMAVGRGLR--REGFYAGGISVKIRLSSFITYTRH 301 Query: 302 HVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDP-QMERQLVL 349 + P L A++ + E G VRLVG+ T L P RQ+ L Sbjct: 302 SRFFEPTWMDDVLYREAKRLFLENYHGELPVRLVGVTATPLVPVGGGRQISL 353 >UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX85_SYNWW Length = 393 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 135/349 (38%), Positives = 197/349 (56%), Gaps = 5/349 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H D+D FFA+VE DNP+LR P+ +GGS RGV+ST +Y ARKFG+RSAMP A Sbjct: 7 ILHCDLDAFFASVEQLDNPSLRGKPVVVGGSMHSRGVVSTCSYEARKFGIRSAMPIAQAY 66 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP LP Y E S + I SRY+ E +S+DEA+LD++ +GS I Sbjct: 67 RLCPQAVFLPVNMPRYLEISKQVFSILSRYSPIKEIISIDEAFLDISGCSSLYGSPEKIG 126 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 I + +++EL LT S G++ KFLAK+ASDM+KPNG +IT +E L+ LP+++I G Sbjct: 127 CLINEQVYSELGLTISVGISYNKFLAKLASDMDKPNGLRIITESEALELLRPLPVSRIWG 186 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 +G+ + L+ +G++T GD+Q L + G GR+ WE + GID R V E RKS+ Sbjct: 187 IGQKTEQSLDKLGIKTIGDIQDSPPEWLEDKIGSAGRLFWELAHGIDRRAVEPEHERKSL 246 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G E T EDI+ + E +I + EL R+L + L A +KL++ +F+ T+ Sbjct: 247 GREETFPEDINDTAYLEKLIVQFAAELCRKLR--QEALFAATITIKLRYSNFKTITRSKT 304 Query: 304 WPRLNKADLI-ATARKTWDERRGGR-GVRLVGLHVTLLDPQME-RQLVL 349 N ++ A + + +RL GL + L P Q L Sbjct: 305 INPCNSDIIVTQIASELLHHSYNNKQPLRLFGLSLGQLSPAASLEQGSL 353 >UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EN92_ACIF5 Length = 378 Score = 403 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 146/361 (40%), Positives = 200/361 (55%), Gaps = 14/361 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD FFAAVE RD+P LR P+ +GG RGV++T +Y AR+FG+ SAM Sbjct: 12 LRKIIHVDMDAFFAAVEQRDHPELRGQPVIVGGDPAGRGVVATCSYEARRFGIHSAMTAA 71 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + R DAY+EAS + I YT +EPLSLDEA+LDVT + A Sbjct: 72 RARSLCPQAVFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFLDVTAATADGVLAV 131 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EIR I E LTASAGV+ K LAK+AS+ KPNG FV+ P AFL LP+ K Sbjct: 132 RIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHGLAFLAPLPVGK 191 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG + KL AMG+ T D++ +L+ +FGK G +E ++GID R V + R R Sbjct: 192 LHGVGPATVKKLSAMGIHTVLDLRNASREVLIAQFGKAGLWFYEVARGIDSRPVQTSRQR 251 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG ERT +++ + + ++ ++ RL + L +K +F DF+ T+ Sbjct: 252 KSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQAL--GLAGRTVSIKARFPDFETVTR 309 Query: 301 EHVWPRL--NKADLIA-----TARKTWDERRGGRGVRLVGLHVTLL-----DPQMERQLV 348 H + +IA A+ VRL+G+ V+ L P Q+ Sbjct: 310 AHTDAQAIWRTEAIIACLPGLLAKAIPASLPMHASVRLLGVTVSGLVNVEAVPPEAGQMN 369 Query: 349 L 349 L Sbjct: 370 L 370 >UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_HALHL Length = 356 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 147/348 (42%), Positives = 203/348 (58%), Gaps = 5/348 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE RD+P+LR P+ +GGS E RGV++ A+Y AR FG+RSA P Sbjct: 4 RKIIHIDMDAFYASVEQRDDPSLRGQPVVVGGSPEGRGVVAAASYEARAFGIRSAQPAAW 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + CP L RFD Y+ S I IF+ + + IEPLSLDEAYLDVT S GSAT Sbjct: 64 ARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRGSATH 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +AQ IR+ I E LTASAGV+ K LAK+ASD KP+G +V+ P + PA++ P+ ++ Sbjct: 124 MAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGPAYVAAQPIRRL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG +AA+LE +G+R GD+ +L L G L + ++GID R V R RK Sbjct: 184 HGVGPATAARLERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRPVRPRRSRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G ERT +D E + L ++ RL +L+ +KL++ DF+ T+ Sbjct: 244 SIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEH--HELVARTVTLKLRYADFESITRR 301 Query: 302 HV--WPRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQ 346 P AD+ A E G R VRL+G+ ++ L P+ Q Sbjct: 302 VSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQ 349 >UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidetes RepID=C6VYA9_DYAFD Length = 372 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 160/360 (44%), Positives = 224/360 (62%), Gaps = 13/360 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A+VE RD P R P+A+GGS RGV++TA+Y ARKFGVRSAMP+ Sbjct: 10 IRKIIHIDMDAFYASVEQRDFPEYRGKPLAVGGSPTGRGVVATASYEARKFGVRSAMPSR 69 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A++LCP + + RF+ YK S IREIFSRYT IEPLSLDEAYLDVT+ GSA Sbjct: 70 QAIQLCPQIIFVHPRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYLDVTEDKMGIGSAM 129 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++I+Q I EL LTASAGV+ KF+AKIASD++KPNG I P+++ F+ LP+ K Sbjct: 130 EIAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIGPSKIERFMDQLPVEK 189 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKV+A K++ M L T D++K L+ FGK G + +GID+R+V + R Sbjct: 190 FHGVGKVTADKMKGMQLFTGSDLKKLTEEELVNHFGKTGHFYYRIVRGIDDREVQTHRET 249 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T D+ E ++R+ + RL K L +K+KF DF Q T+ Sbjct: 250 KSLGAEDTFTYDLTTPDEMNKELDRIGVTVANRLETKK--LKGRTVTLKVKFSDFTQITR 307 Query: 301 EHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLL-DPQME-------RQLVL 349 H + P + + TA++ ++ G+ VRL+G+ ++ +P+++ QL L Sbjct: 308 NHSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRLLGISLSNFHEPEVKYRKYKDPEQLEL 367 >UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria RepID=B9JZV6_AGRVS Length = 385 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 152/355 (42%), Positives = 207/355 (58%), Gaps = 7/355 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD F+A+VE RD P L P+A+GGS RGV++ A+Y AR FGV SAMP+ Sbjct: 32 VRKIIHVDMDAFYASVEQRDKPELLGKPVAVGGS-AARGVVAAASYEARAFGVHSAMPSV 90 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L +P RFD Y++ S+ IREIF+ YT IEPLSLDEAYLDVT+++ AT Sbjct: 91 TAKRKCPDLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIAT 150 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR I L ASAG++ KFLAK+ASD+NKPNGQ VITP P F++ LP+ + Sbjct: 151 EIALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVKR 210 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A +++ G+ T D++ L L FGK G + ++GIDER V ++R+R Sbjct: 211 FHGVGPATAERMQRHGIETGLDLKSKSLQFLQTHFGKSGSYFYGIARGIDERQVRADRIR 270 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T EDI A + L ++ R D+ VK+K+ DF Q T+ Sbjct: 271 KSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCES--HDIKGKTITVKIKYSDFSQATR 328 Query: 301 EHVWPRL--NKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQL-VLGL 351 + ++ A VRL+G+ ++ L+ + Q L L Sbjct: 329 SKTVAGYVSDIDMIMGIAEPLLASVFPFKHPVRLLGITLSSLNTEESEQTPQLAL 383 >UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4_THETN Length = 384 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 141/350 (40%), Positives = 198/350 (56%), Gaps = 8/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD FFA++E +DNP R P+ +GG RGV+ST +Y ARK+G+ SAMP M Sbjct: 3 RKIIHVDMDAFFASIEQQDNPEYRGKPVIVGGL-SGRGVVSTCSYEARKYGIHSAMPMYM 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP LP R Y+E S I I T +EP+S+DEAYLDVT H + Sbjct: 62 AKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVT---HVDKNPED 118 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA EI++ + + LT S G++ KFLAK+ASD NKP+G VIT VP L+ LP+ K+ Sbjct: 119 IALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITEDMVPEILKPLPVTKV 178 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G+ SA KL ++G+ T D+ K L++ FGK G ++ R +GIDER V + R K Sbjct: 179 HGIGEKSAEKLRSIGIETVEDLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIK 238 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E+T+ +D + ++ + L +K L VK+K DF T+ Sbjct: 239 SIGKEKTLEKDTKNKELLIQHLKEFSEIVSEEL--IKERLYCRTVTVKIKTADFAVHTKS 296 Query: 302 HVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + + D+ A+ +E + + VRL+GL V+ L P QL Sbjct: 297 KTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLSPVKYEQLSF 346 >UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R7_9GAMM Length = 359 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 183/353 (51%), Positives = 237/353 (67%), Gaps = 5/353 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVD D F+A+VEMR++P+L P+A+GGS +RRGVI+T NY ARKFGVRSAMP+ Sbjct: 4 RKIIHVDADSFYASVEMREDPSLAARPVAVGGSAQRRGVIATCNYEARKFGVRSAMPSSR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP L +L RFD Y+E S +IF YT +IEPLSLDEAYLDV+D HGSATL Sbjct: 64 ALQLCPGLIILSARFDLYREVSQQFHQIFKDYTDKIEPLSLDEAYLDVSDCEQFHGSATL 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IR+ I EL LT SAGVAP KFLAK+ SD +KP+G F ITP +V F+ LP+++I Sbjct: 124 IAQDIRRRIKQELNLTVSAGVAPNKFLAKVGSDWDKPDGCFTITPEDVAEFVVDLPVSRI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V+AAKLE +G TCG++Q L +L+KRFGK+G L + + G+D+RDV + R RK Sbjct: 184 NGVGAVTAAKLEKLGATTCGELQSIPLEVLVKRFGKYGSRLAKVAHGLDDRDVQTSRTRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ VE T DI + + + RL ELE R K++ ++ VK+KFD+F+QTT E Sbjct: 244 SISVENTYHSDIEQLQQMDQALTRLLDELEGRFHKIEERYRPHKRFVKVKFDNFEQTTIE 303 Query: 302 HVWPRLNKADLIATA-RKTWDERR--GGRGVRLV--GLHVTLLDPQMERQLVL 349 + P + L A G R VRL+ GL + L +ME QLVL Sbjct: 304 EIIPDSGEHWLNEKAYHALLHSAWQRGSRPVRLLGAGLRLEPLHKEMEMQLVL 356 >UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_PSEU2 Length = 354 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 172/349 (49%), Positives = 224/349 (64%), Gaps = 3/349 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DCF+AA+EMRD P L P+A+GGS ERRGVI+T NY AR +GVRSAM + Sbjct: 4 RKIIHIDCDCFYAAIEMRDEPDLAGKPLAVGGSAERRGVIATCNYEARAYGVRSAMSSRH 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP LT++ R DAYKEAS I IF YT IEPLSLDEA+LDV+++ H GSAT Sbjct: 64 ALKLCPDLTIVKPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVSEAGHFSGSATR 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IR+ + N+L +T SAGVAP KFLAKIASD KPNG FVITP +V F+ +LP+ K+ Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEEFVASLPVTKL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A KL +G+ C D++ + L++ FG FG LW + GID+R V ++ R+ Sbjct: 184 HGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGERLWSLAHGIDDRPVQNDSRRQ 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV VE T D+ + C + L L R+A+++ + VK+KF DF QTT E Sbjct: 244 SVSVENTYDTDLPDLAACLEKLPDLLETLSGRMARMEGQYRPGKPFVKVKFHDFTQTTLE 303 Query: 302 HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD-PQMERQLVL 349 + + + RGG+ VRL+G+ V L D QL L Sbjct: 304 QSGAGRDLGSYEQLLAQAF--ARGGKPVRLLGIGVRLHDLRAAHEQLEL 350 >UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WH69_9SYNE Length = 371 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 207/354 (58%), Gaps = 5/354 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A++E RDNP LR P+A+GG +RG + A+Y ARK+G+ SAMP+ Sbjct: 20 VRKIIHIDMDAFYASIEQRDNPELRGKPVAVGGLPSQRGAVCAASYEARKYGIHSAMPSR 79 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A+ C HL + RF+ Y+ S IR IF YT +EPLSLDEAYLDV+ GSA Sbjct: 80 SAITRCQHLIFVKPRFEHYRAVSAEIRAIFFDYTELVEPLSLDEAYLDVSVDKQGIGSAV 139 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++IR I +LQLTASAGV+ KFLAKIASD+NKP+G I+P E F++ L + Sbjct: 140 AIAKQIRDRIRTDLQLTASAGVSINKFLAKIASDLNKPDGLSFISPEEAKTFIEQLRIED 199 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A K++++G+ T D++ L + FGK G + ++ D R VN R+R Sbjct: 200 FYGVGPATATKMKSLGIHTGADLKTWTQAELTQTFGKVGSYYYRVARAEDNRPVNPNRIR 259 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G ER+ D+ + E + + E+ +RL K K +K+K+D++ T+ Sbjct: 260 KSIGAERSFFRDLSQIEDMETALANIATEVSQRLQKNKRQG--HTLTLKIKYDNYDTITR 317 Query: 301 EHVWPR-LNKADLIATARKTWDER-RGGRGVRLVGLHVTLL-DPQMERQLVLGL 351 + + ++ A + R VRL+G+ V+ L PQ QL L + Sbjct: 318 SRTLETPIEEKQILQIATRLLSLHVERDRPVRLLGITVSNLIAPQPYHQLTLNI 371 >UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_CLOD6 Length = 365 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 211/354 (59%), Gaps = 6/354 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A++E RDN L+ P+ +GG+ + RGV++T +Y ARKFG+ SAMP+ + Sbjct: 5 RKIIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMPSAV 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A CP+ + RFD YK S IR+IF RYT +EPLSLDEAYLDVT + S+ Sbjct: 65 AYNRCPYAVFVRPRFDVYKSVSEKIRDIFYRYTDLVEPLSLDEAYLDVTKNKKNIDSSIE 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++I++ IF E+ LT+SAGV+ KFLAKIASD+ KPNG VIT FL LP+ K Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV++ L+ +G++T D++ +L L F K G L++ ++GID+R V R+RK Sbjct: 185 FGVGKVTSNTLKNLGIKTGYDLRCLNLFELENIFKKRGYELYKFARGIDDRPVEPNRVRK 244 Query: 242 SVGVERTMAEDIH-HWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 SVG E T++ ++ E I++ L E+ RL + +K+K++DF + T+ Sbjct: 245 SVGAETTLSHNLDIDEEETRNILDELCEEVCHRLK--NSEKFGKTLTLKIKYEDFTKITR 302 Query: 301 EHVWPRLNKA--DLIATARKTWDERR-GGRGVRLVGLHVTLLDPQMERQLVLGL 351 D+ + G+ +RL+G+ ++ L + E + L Sbjct: 303 SLSLEHYIDEYNDIRSGVDNLLRNVEVNGKQIRLLGVTISNLSDKKETYKDITL 356 >UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibrio RepID=B8DIF6_DESVM Length = 481 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 142/355 (40%), Positives = 199/355 (56%), Gaps = 9/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FFA+VE D+P+LR P+A+GGS RGV+S A+Y AR+FGVRSA+P Sbjct: 4 RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGS--HRGVVSAASYEARRFGVRSALPMST 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCPHL ++PGR Y E S+ I + ++ +EP S+DEAYLD T G Sbjct: 62 ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121 Query: 122 IAQEIRQTIFNELQ-LTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 + ++ + + LT S G APVKFLAKIASD+NKPNG F++ P +V FL+TLP+ + Sbjct: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGK S LE +G+R GDV + +RFGK G L ER+ G+D R+V Sbjct: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS E T +ED + + + L + + L +K+K+ DF+ ++ Sbjct: 242 KSESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQR--LAGRTITLKVKYADFRSISR 299 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVLGL 351 H P + + A + D VRL+G+ V+ P RQL L L Sbjct: 300 SHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPAHHGPRQLTLPL 354 >UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=DPO4_DESAA Length = 396 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 134/339 (39%), Positives = 197/339 (58%), Gaps = 6/339 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 IIHVDMD F+A+VE+ DNP LR + +GG+ RGV+ +A+Y AR GVRSAMP A Sbjct: 6 IIHVDMDAFYASVELLDNPELRGQCVIVGGA-SNRGVVCSASYEARALGVRSAMPIVTAR 64 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP LP R Y+E S + EIF +YT +EP+SLDEA++DVT S GS IA Sbjct: 65 KLCPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLFGSGEEIA 124 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR+ I + L +TASAG+A K +AKIASD+ KPNG V+ + FL LP++++ G Sbjct: 125 ANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPADQTQEFLDPLPISRLWG 184 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG S KL ++G++T DV+K ML FG+ G +++ ++G+D+R V KS+ Sbjct: 185 VGPASRNKLISLGVKTIRDVRKLTQEMLSANFGRNGEVIYAFARGMDDRPVEPPGAAKSI 244 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G E T +++ E + L + RR+ K + +K+K+ DF Q T+ Sbjct: 245 GREITFDRNVYTLEEAYKWMLFLSERVARRMR--KEEATGRTVNIKVKYADFIQVTRSVT 302 Query: 304 W--PRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLL 339 P + ++ A+K + G + VRL+G+ ++ L Sbjct: 303 LESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQL 341 >UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatella RepID=C8NE97_9LACT Length = 352 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 144/353 (40%), Positives = 206/353 (58%), Gaps = 6/353 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKI+HVDMD FFA+VE R++P R P+ +GG RGV+ST +Y AR FGVRSAMPT Sbjct: 1 MRKILHVDMDAFFASVEQREHPEWRGKPVIVGGKPNERGVVSTCSYEARAFGVRSAMPTA 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A+KLCP L PG + YKE S+ +RE+F +T+ IEPLS+DEAYLDVT++ SAT Sbjct: 61 KAMKLCPKAILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYLDVTNNSRGIASAT 120 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A I++ ++ + LT S GV+ KFLAK+AS KP+G VITP F++T+P+ Sbjct: 121 LVAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKPSGITVITPENAQEFIRTIPIGD 180 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKVSA KL G+ T D+ L RFG G L+ + +GI + R R Sbjct: 181 FYGVGKVSAEKLRRAGIETGEDLLHLSKAELESRFGNLGPRLYAQVRGISNDQLTLYRER 240 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G ERT+ +D +E+ E+ L K L +KL+ +F T++ Sbjct: 241 KSMGSERTLIKDTTDHGILSEYLEKFSLEIASMLQ--KRALASRTISLKLRDSNFNTTSK 298 Query: 301 EHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLD--PQMERQLVL 349 K +++ A + ++E + +RL+GL V+ L+ ++ +QL L Sbjct: 299 SVTLRDYFNKKEEILQLALQLFEEMMDEKPIRLIGLSVSHLEKTDKIYKQLKL 351 >UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42_AGRT5 Length = 357 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 208/358 (58%), Gaps = 10/358 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIHVDMD F+A+VE RDNP LR P+A+G + R V + A+Y AR+FGVRSAMP+ Sbjct: 1 MRKIIHVDMDAFYASVEQRDNPELRGRPVAVGSAAARGVV-AAASYEAREFGVRSAMPSV 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L +P RFD YK S IR IF+ YT IEPLSLDEAYLDVT+++ AT Sbjct: 60 TAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I L ASAG++ KFLAK+ASD+NKPNGQ VITP PAF++ L + K Sbjct: 120 EIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLAVKK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A K+ G+ T D++ L L + FGK G + ++GIDER V +R+R Sbjct: 180 FHGVGPATAEKMHRFGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPDRIR 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T + DI+ A + L ++ + + VK+K+ DF Q T+ Sbjct: 240 KSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQR--VSGKTVTVKVKYSDFTQATR 297 Query: 301 EHV--WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLL----DPQMERQLVLGL 351 P +++ A R VRL+G+ ++ L + + E Q L L Sbjct: 298 SRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQEAEDEEQPQLDL 355 >UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKI6_9BACT Length = 361 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 169/352 (48%), Positives = 223/352 (63%), Gaps = 9/352 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 KIIH+DMDCF+AA+E+RD+P LR P+A+GG RRGV++T NY AR FG+ SAMPT A Sbjct: 13 KIIHIDMDCFYAAIEVRDHPELRGEPVAVGGRSSRRGVLTTCNYEARAFGIHSAMPTYQA 72 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 ++ CPHL + P RF+ YK S IR IF+ YTS IEPLSLDEAYLDV+ H A+ I Sbjct: 73 MQRCPHLIIKPVRFEVYKNESRRIRAIFADYTSAIEPLSLDEAYLDVS---HLDRPASAI 129 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A EIR+ I L ASAG+AP K LAKIASD KPNGQ+ ITP ++ F++ LP++KI Sbjct: 130 ALEIRKRIRQTTGLNASAGIAPNKMLAKIASDWRKPNGQYEITPDQIADFMRELPVSKIW 189 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVGK SAA+L ++ + TCGD+Q+ + L K FGKFG L+E S+GID RDV S R+RKS Sbjct: 190 GVGKKSAARLASLDIATCGDLQQKTRLELQKHFGKFGSELYELSRGIDHRDVVSNRIRKS 249 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 + ERT A D+H + + ++ EL LA+ K D I + VK K+ DF +T+ E Sbjct: 250 MSCERTYATDLHSLDDRQQHAADIFQELSADLARFKSDRPIHKLFVKCKYSDFTRTSIER 309 Query: 303 VWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME----RQLVLG 350 A +++ R +RL+GL V DP+ + QL Sbjct: 310 SGLPFTLASFQDLLAESYHRRSD--PIRLLGLGVRFTDPETQTRSPNQLEFD 359 >UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU3_PELCD Length = 399 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 136/351 (38%), Positives = 198/351 (56%), Gaps = 7/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD F+A+VE D+P L+ P+ +GG R RGV+ +Y AR FG+ SAMP Sbjct: 9 RIILHLDMDAFYASVEQLDSPELKGQPVVVGGHRS-RGVVCACSYEARTFGIHSAMPMSR 67 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP + P R Y+E S + +IF RYT +EPLS+DEA+LDVT S G Sbjct: 68 ALRLCPQAIVQPVRMARYQEISRQVFDIFGRYTDLVEPLSVDEAFLDVTASRRLFGEGWD 127 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++IR+ + +EL L SAG+AP KFLAK+AS+ KP+G F + P V FL +LPL ++ Sbjct: 128 IAEKIRRDVRDELGLPISAGIAPNKFLAKLASEQAKPDGVFQV-PERVDDFLLSLPLKRL 186 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V L+ MGLRT D++ D + + FG+ G L + + G DER V +R K Sbjct: 187 WGVGPVLLKSLQKMGLRTVADLRHMDRADMERCFGQAGERLIQLAHGEDERPVEPQRSLK 246 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +DI + L + RL K L+ +K+K+ DF T+ Sbjct: 247 SIGHEDTFDQDIFERETMHVALLDLVERVAARLR--KHGLIGTTLTLKVKYADFSTVTRS 304 Query: 302 HVWPR--LNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQLVL 349 + D++ A++ ++ G + VRL+G+ + L Q +L Sbjct: 305 RSVADGICHARDMLHLAKQLLEKTEAGKKPVRLLGVSLANLMDADSGQGLL 355 >UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_9GAMM Length = 390 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 144/342 (42%), Positives = 195/342 (57%), Gaps = 5/342 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD FFAAVE RD P LR +P+ +GG RGV++T +Y AR+FG+RSAM Sbjct: 28 IRKIIHVDMDAFFAAVEQRDRPELRGLPVIVGGDPNVRGVVATCSYEARRFGIRSAMSAA 87 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + R DAY+E S + I YT+ +EPLSLDEA+LDVT + A Sbjct: 88 RARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTDGTLAV 147 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EI I E LTASAGV+ K LAK+ASD KP+G FVI P AFL LP+ K Sbjct: 148 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERGLAFLAPLPVGK 207 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG + KL AMG+ T D++ L L+ FGK G ++ ++ IDER V R R Sbjct: 208 LHGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPSRQR 267 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG ERT ++++ S ++ + ++ RL + L +K +F DF T+ Sbjct: 268 KSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVL--HLAGHTVHIKARFPDFTTVTR 325 Query: 301 EHVWPR-LNKADLIAT-ARKTWDE-RRGGRGVRLVGLHVTLL 339 + + AD IA + D VRL+G+ ++ L Sbjct: 326 AYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGITMSGL 367 >UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacter RepID=Q1QAG3_PSYCK Length = 371 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 147/353 (41%), Positives = 199/353 (56%), Gaps = 4/353 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A+VE RD P LR P+ +GG RGV++ A+Y RKFGVRSAM Sbjct: 19 LRKIIHIDMDAFYASVEQRDFPELRGKPLVVGGDPNGRGVVAAASYEVRKFGVRSAMSCY 78 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A K CP + +P RFD Y+ S IR I T +EPLSLDEAYLDVT GSAT Sbjct: 79 EARKRCPEVIFVPPRFDVYRAVSVEIRRIMHILTPHVEPLSLDEAYLDVTGLSVHQGSAT 138 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A +R I + L ASAGV+ K LAKIASD+NKPNG VITPA+ AF+ LP+ + Sbjct: 139 LMANWLRAQILGQTGLNASAGVSFNKMLAKIASDINKPNGTAVITPADADAFISALPIER 198 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+GK +A +L AMG+ D+++ +L+ FGK G+ + + G DER V SER Sbjct: 199 FHGIGKATAKRLHAMGVSNGADLRRTPAAILVNEFGKRGQFYHDIAHGRDERAVKSERTH 258 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T E++ +E + I + +L K L+ +K+K+ DF Q T+ Sbjct: 259 KSVGSETTFRENLTDDNELKIQIYEQNADAFSQL--HKKQLIAYTITLKVKYSDFTQVTR 316 Query: 301 EHVWPRLNKADLIATAR--KTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 H + A K + + +RLVG+ + L + L L Sbjct: 317 SHTLSTAFDSAESAHFWLDKLFLDIPRTLPIRLVGVTFSSLTSATQVTPQLNL 369 >UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDP3_9FIRM Length = 395 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 121/356 (33%), Positives = 180/356 (50%), Gaps = 9/356 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPT 59 MR+IIHVDM+ FFA+ NP + P+ + G + R G+I TA+Y ARKFGV++AM Sbjct: 1 MRQIIHVDMNAFFASCHQAQNPQWQGKPLLVAGDPQKRHGIILTASYEARKFGVKTAMAV 60 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A KLCP + Y S I I YT +EP S+DEA+LDVT S G+ Sbjct: 61 WQAKKLCPQGIYISPDHKLYSAYSKRIMAIMEDYTPLVEPFSIDEAWLDVTGSARLFGTT 120 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 I + ++Q I +E + S G++ KFLAK+AS+ KP G ++ P +VP L LP+ Sbjct: 121 EEIGRLLQQRILDETGIPCSVGISGNKFLAKMASERQKPQGFTILWPRDVPEVLWPLPVE 180 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE-- 237 ++ GVG+ A L MG+ T G++ L +L+ RFG G L + G D+ V+ Sbjct: 181 EMVGVGRKMAPALHEMGIETIGELAAMPLRLLVSRFGVAGESLHHLANGRDDSPVDPTVF 240 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KSVG T+ DI+ + ++ +L ++ RRL + + + +K +F Sbjct: 241 DTVKSVGNSLTLPRDINDPEDVARVLLKLSEKVGRRLR--QSGNVARTVTLTVKDQNFVS 298 Query: 298 TTQEHVW--PRLNKADLIATARKTWD-ERRGGRGVRLVGLHVTLLDPQM-ERQLVL 349 T+ P + TA + R VRL+G+ V+ L P QL L Sbjct: 299 VTRSRTLHEPTGFTDVIYKTAVDIHQKQFEPWRKVRLLGVSVSNLLPADGGVQLSL 354 >UniRef50_A4BJD8 DNA polymerase IV n=1 Tax=Reinekea blandensis MED297 RepID=A4BJD8_9GAMM Length = 365 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 173/350 (49%), Positives = 219/350 (62%), Gaps = 9/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DC++AA+EMRD P LR P+A+GG + R V+ST NY AR +G+ SAMP+ Sbjct: 3 RKIIHIDCDCYYAALEMRDFPELRGRPVAVGG-QGPRSVLSTCNYEARHYGLHSAMPSRR 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL LCP L + P RFD Y+ S IR+IFSRYT RIEPLSLDEA+LDVTDS GSA++ Sbjct: 62 ALSLCPGLIIQPHRFDVYRAVSEQIRQIFSRYTDRIEPLSLDEAFLDVTDSTWFGGSASM 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A+ IRQ I E +T SAG+AP KFLAK+AS+ KPNG + I+P V FL +LPL KI Sbjct: 122 LAEHIRQEIVQETGITVSAGIAPNKFLAKVASEWRKPNGLYSISPEAVDEFLSSLPLKKI 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG + KL GL TCGDV + L L + FGK G L++R++GID R V RK Sbjct: 182 NGVGSKFSQKLAEHGLHTCGDVLRWSLPRLTQYFGKSGLWLYQRARGIDHRPVGVRSDRK 241 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ VE T D+ S C + L L RRLA K L I VK++F+DF TT E Sbjct: 242 SLSVEHTFDTDLAGESACLTQLTPLLDTLNRRLA-AKDPLPIKGVFVKVRFNDFSTTTME 300 Query: 302 HVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P R + L+ A + + RGVRL+GL V + Q + QL L Sbjct: 301 RGLPCLRASYEQLLKAACQ-----KSHRGVRLLGLGVRFEEKQSKDQLEL 345 >UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3M4_EXISA Length = 363 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 154/355 (43%), Positives = 202/355 (56%), Gaps = 9/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIHVDMD F+A+VE RD P LR P+ +GG RGV++T +Y ARK+GV SAM + Sbjct: 3 RLIIHVDMDAFYASVEQRDRPNLRGKPVIVGGPPHSRGVVATCSYEARKYGVHSAMSSRR 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCPH T + RF AY++ S + EIF T +EPLSLDEAYLDVT++ S Sbjct: 63 AFALCPHATFVKPRFQAYRQVSAQVMEIFKSVTPLVEPLSLDEAYLDVTENSLLSTSGPF 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I I LTASAGVAP KF+AKIAS KPNG V+ EV FL L + + Sbjct: 123 IARYILGEIKRRTGLTASAGVAPSKFVAKIASGFEKPNGLTVVPLDEVATFLAPLSIEAM 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVGKV+A L G T GD+Q+ L FG G+ L+E + G D R V + R R Sbjct: 183 HGVGKVTAQTLYKSGYHTIGDLQQTRPEQLKGIFGHDRGQQLYELAHGRDTRPVVAMRER 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKV-KPDLLIARQGVKLKFDDFQQTT 299 KS+G E T A DI E + ER+ PE+E L ++ + DL +K+K +FQ + Sbjct: 243 KSIGSETTFAFDIDDPEE---VFERVIPEMEDVLRQLDRRDLSCQTVTIKIKTSEFQARS 299 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVLG 350 + P + ++ AR+ +DE VRL+GL V+ L P+ E RQL Sbjct: 300 HQIKLNHPTHDHDEIRRLARRLFDEMNVTEPVRLIGLTVSDLIPRTESTRQLTFD 354 >UniRef50_A0YE03 DNA polymerase IV n=2 Tax=Gammaproteobacteria RepID=A0YE03_9GAMM Length = 388 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 227/355 (63%), Gaps = 5/355 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH D DCFF AVEMRD+P+L P+A+GGS +RRGVIST NY AR +GV SAM T Sbjct: 29 RKIIHCDADCFFVAVEMRDDPSLFGRPVAVGGSADRRGVISTCNYEARAYGVGSAMATAT 88 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP L +L G + YK A++ +R IF Y++ +EPLSLDEAY+DVT S CHGSATL Sbjct: 89 ARRLCPDLIVLSGNMEKYKLAASQMRTIFCEYSTLVEPLSLDEAYIDVTGSDACHGSATL 148 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIRQ + + +T SAGVAP KFLAKI SD NKPNG VI PA V AF+Q +P+ ++ Sbjct: 149 IAEEIRQRVKESVGITLSAGVAPNKFLAKIGSDWNKPNGLCVIPPARVDAFVQAMPVDRL 208 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A +L MG++TCGD++ + L +RFG FG L++ S+GID+R V + R+RK Sbjct: 209 FGVGKVTAERLHRMGIQTCGDLRAFSIFQLSERFGSFGSRLYDLSRGIDDRAVKTGRIRK 268 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPD-----LLIARQGVKLKFDDFQ 296 S+ VE T D+ C + L+ +L RL + + +Q +K+KF++FQ Sbjct: 269 SLSVEHTFPSDLSAIDSCLEQLPDLFDQLTTRLQTLNDQSKGAAYRVNKQFIKIKFNNFQ 328 Query: 297 QTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 TT E + + + + R G VRL+GL V DP + + L L Sbjct: 329 STTMECIVAGAPRIAIFRELCRESILRGDGLAVRLMGLGVRFQDPACDGAVQLSL 383 >UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae RepID=DPO4_STAHJ Length = 358 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 145/351 (41%), Positives = 202/351 (57%), Gaps = 5/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+IIH+DMD FFA VEMRDNP L+ P+ +GG RGV+STA+Y ARK+GV SAMP Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPTLKGKPVIVGGKASTRGVVSTASYEARKYGVHSAMPMSQ 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP+ + RFDAY+EAS I IF YT +EP+SLDEAYLD+T V SA+ Sbjct: 64 AHKLCPNGYYVRARFDAYREASAVIMSIFKSYTDIVEPMSLDEAYLDITHLVRPDLSASK 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA IR+ IF + LT+SAGV+ KFLAK+AS MNKPNG VI V L L + Sbjct: 124 IATFIRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPNGMKVIDYNNVNDILMNLDIGDF 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGK S + + T D+ L++ FGK GR L+ +++GID +V + R+RK Sbjct: 184 PGVGKASKKVMHNHDIYTGKDLYDKTEFELIRWFGKRGRGLYLKARGIDHSEVKATRVRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SVG ERT + D++ E I L + RL+K++ + VKLK ++ +++ Sbjct: 244 SVGTERTFSTDVNDDEEILQKIWELSGKTAERLSKLQKSG--STVTVKLKTYQYETFSKQ 301 Query: 302 HVWPRL--NKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVL 349 D+ A +++ + +RL+G+ V L+ + + Sbjct: 302 RSLREAVSRDIDIYNVAYDLYNDLKDPDVPIRLIGVTVGNLEQSRYENMTI 352 >UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C6BW91_DESAD Length = 389 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 134/350 (38%), Positives = 194/350 (55%), Gaps = 6/350 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I+H+DMD FFA+VE DNP LR P+ +G E R V+S A+Y ARKFGVRSAMP Sbjct: 3 KYIMHIDMDAFFASVEQLDNPELRGKPVGVGSMHE-RSVLSAASYEARKFGVRSAMPVRQ 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP L ++ G YKE S + S Y+ +E S+DEAY+D+T + G+ Sbjct: 62 ALKLCPQLQVVSGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYIDITGTEKLFGTPLQ 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I+ I LTAS G+APVKFLAKIASD+NKP+G +IT +V FL+TLP+ KI Sbjct: 122 IARSIKADIRKATGLTASVGIAPVKFLAKIASDLNKPDGISIITAEQVQDFLKTLPVEKI 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGK + +L + G+ D+++ +RFG+ G +L+E+ GID V K Sbjct: 182 PGVGKKALPRLRSYGITYAADLRRYPPEFWKERFGERGLVLYEKGAGIDPTPVTEGGAMK 241 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S E T ED+ + ++ + + + K + +K+KF DF+Q T+ Sbjct: 242 SSSAENTFGEDVSDIHTLKTLLLKQSERIAADIR--KHGVKGRTVTLKVKFPDFRQITRS 299 Query: 302 HVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + + TA D +RL+G+ ++ + + RQL L Sbjct: 300 RTLDSRTSHAGTIYKTACSLLDAELPIGPIRLIGVGISNFEER-NRQLSL 348 >UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW5_9BACT Length = 387 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 144/350 (41%), Positives = 204/350 (58%), Gaps = 9/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD FFAAVE RDNP LR P+A+G RGV+STA+Y ARK+GV SA Sbjct: 19 RKIIHIDMDAFFAAVEQRDNPELRGKPVAVGFD-GPRGVVSTASYEARKYGVHSAQSIAQ 77 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + CP+L ++P R D Y + S+ I +IF YT IEP+S+DEA+LDVT + A Sbjct: 78 AKQRCPNLIIVPCRHDYYAKISHQIHQIFQEYTDLIEPISIDEAFLDVTQNKKGIELAVD 137 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EI+ I LTASAG++ KFLAK+ASD KP+G I P + F+ LP+ Sbjct: 138 IAKEIKTRIKEATGLTASAGISYCKFLAKVASDYRKPDGICTIHPDKAYDFIAQLPIEDF 197 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGK + K+ MG+ D++K L++ FGK G I ++ ++GIDER V + R RK Sbjct: 198 WGVGKKTLQKMHFMGIFNGADLRKVSEEHLVEVFGKAGHIFYDFARGIDERPVITYRERK 257 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQ 300 SVG E+T EDI+ + A+I LY + L ++ R +K+KF DF Q T+ Sbjct: 258 SVGCEQTFLEDIYLKT---AVIIELYHTVLELLERIAKSGFEGRTLTLKVKFADFTQITR 314 Query: 301 EHVWPRL--NKADLIATARKTWDE--RRGGRGVRLVGLHVTLLDPQMERQ 346 ++ K D++ A++ + +RL+GL V+ + R+ Sbjct: 315 SISQEKVLKKKDDILPLAKRLLKQVDYSSAHPIRLLGLSVSNASSEEARK 364 >UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomycetales RepID=A6CAV0_9PLAN Length = 388 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 139/345 (40%), Positives = 201/345 (58%), Gaps = 6/345 (1%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD F+A++E RD+P L+ PI +GG E RGV+S ANYPARKFGV SAMP A +LCP Sbjct: 1 MDAFYASIEERDHPELQGQPIIVGGRAEHRGVVSAANYPARKFGVHSAMPMKTARQLCPQ 60 Query: 69 LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQ 128 P R Y E S +++IF +YT +EPLSLDEA+LDV+ S G+ IA I+Q Sbjct: 61 AHFFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFLDVSGSQLLFGNGREIAASIKQ 120 Query: 129 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVS 188 + + LQL AS GVAP KFLAKIASD +KP+G V+ P ++ FL LP++++ G+GK++ Sbjct: 121 EVRHSLQLIASVGVAPNKFLAKIASDADKPDGLVVVEPDKIQEFLDPLPVSRVWGIGKMA 180 Query: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERT 248 + +G++T V+ + +L + FG+ G LW SQG+DER V ER KS+ E T Sbjct: 181 TQRFNRLGIQTISQVRVLEPKILTELFGEQGLHLWNLSQGLDERAVIPERQAKSISRETT 240 Query: 249 MAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW--PR 306 + D++ I+ L ++ RRL K K L +K+++DDF T+ P Sbjct: 241 FSSDVNDLEILRIILMDLVEDVSRRLRKNK--LRGKTIQLKIRYDDFSTFTRSITVSQPT 298 Query: 307 LNKADLIATARKTWDERRGGRG--VRLVGLHVTLLDPQMERQLVL 349 ++ +A D++ R +RL+G+ VT + Q L Sbjct: 299 DLTREIEQSALLMLDQKLPERPLSIRLIGVGVTGFQSGSQHQKSL 343 >UniRef50_B6J224 DNA polymerase IV n=5 Tax=Coxiella burnetii RepID=B6J224_COXB2 Length = 372 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 171/350 (48%), Positives = 224/350 (64%), Gaps = 4/350 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMDCF+ A+EMRDNP LR+ P+A+GG+ RGVI TANY AR +GV+SA+ + Sbjct: 24 LRKIIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRGVICTANYIARGYGVQSAISSS 83 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCP L +LP + Y+ + IR +F YT +EPLSLDEAYLDV+D GSAT Sbjct: 84 YAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSLDEAYLDVSDCKIHQGSAT 143 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IAQEIR+ I LTASAGVA K LAK+AS NKPNG VI P++ F++TLP+ K Sbjct: 144 RIAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPSKADDFVKTLPIEK 203 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 I GVGK++A K++AM + TC D+Q L K FG FG L+E +GID R V R+R Sbjct: 204 IHGVGKITAQKMKAMNIHTCSDLQALSREALSKSFGSFGVTLYELCRGIDPRSVEPNRIR 263 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSV VE T ++DI SECE + L+ +L++RL K D I +Q VK+KF+DF+ T+ Sbjct: 264 KSVSVEHTFSQDIATLSECEIELANLFNDLKQRLLK-HTDRCIRKQFVKIKFNDFK-ITK 321 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL-DPQMERQLVL 349 + DL ER+ + VRL+G+ V+ DP +E Q Sbjct: 322 AETITQTISLDLFKHLLYQIFERQQ-KPVRLLGVGVSFSEDPLLELQRTF 370 >UniRef50_A3NBC4 DNA polymerase IV n=15 Tax=pseudomallei group RepID=A3NBC4_BURP6 Length = 403 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 166/350 (47%), Positives = 229/350 (65%), Gaps = 2/350 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH D DCF+A+VEMRD+P+LR P+A+GG ++RGVI+T NY AR++GV SAM + + Sbjct: 19 RKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYDARRYGVHSAMSSAL 78 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++ CP L +LP D Y+ AS I I+ YT +EPLSLDEAYLDV+ + C GS TL Sbjct: 79 AMRKCPDLLILPPAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCQGSGTL 138 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR+ + + + +T SAGVAP KF+AKIASD NKP+G FV+ P EV AF+ LP+ K+ Sbjct: 139 IAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHEVDAFVAALPVRKL 198 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+AA+L+ +G+RTC ++ L L + FG FGR L E ++GIDER V +++ RK Sbjct: 199 HGVGKVTAARLDKLGIRTCAQLRDWSLFDLHRTFGAFGRRLHELARGIDERPVRADQARK 258 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV VE T +D+ C A I RL L+ R+ + I + VK++F DFQ+TT E Sbjct: 259 SVSVETTYVQDLAALDACAAEIRRLTGLLDARIERAGAARSIRKLYVKIRFADFQRTTVE 318 Query: 302 HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 V + +A K RR + VRL+G+ V + + ER + L Sbjct: 319 CVADATDAETAVALLAKGLARRR--QAVRLLGVGVRIDEDTAERHGQIAL 366 >UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteobacteria RepID=A0LG84_SYNFM Length = 425 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 126/351 (35%), Positives = 191/351 (54%), Gaps = 6/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+I+HVDMD F+A+VE D P + P+ +GG+ RRGV+S A+Y AR+FGV SAMP Sbjct: 35 RRIMHVDMDAFYASVEQADRPEFKGKPVIVGGA--RRGVVSAASYEARRFGVHSAMPVFQ 92 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LP R YKE S + +I + +E +S+DEA++D+T + HGS Sbjct: 93 AKRLCPGGIFLPVRMGRYKEVSKVVMDILCGISPLVEQISIDEAFVDITGTEALHGSPES 152 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + ++ I ++T S G+AP KF+AKIASD++KP+G ++ V AFL LP+ +I Sbjct: 153 LGRRVKSQIRAATRVTCSVGIAPGKFVAKIASDIHKPDGLTIVEDDRVEAFLAPLPVERI 212 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+GK ++ L ++G+R GDV + +KR G +G L ER++G+D V + K Sbjct: 213 PGIGKKTSEALRSLGVRAIGDVLRFPASFWVKRLGAWGVKLHERARGVDPAPVIAYSQAK 272 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S E T ED+ E + E+ + L + +K+KF DF T+ Sbjct: 273 SCSAEDTFPEDVDDVETLEKWLFVQSEEVGKELR--RESFRGRTVTLKVKFADFSSITRS 330 Query: 302 HVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 H + TA + + R VRLVG+ V+ L E++ V Sbjct: 331 HTLREATDCTQLIFGTASRLLRALKLNRKVRLVGVGVSNLSAMPEQKPVFS 381 >UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8L2_NATTJ Length = 408 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 133/361 (36%), Positives = 207/361 (57%), Gaps = 16/361 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+I+H+DMD F+A+VE RDNP L D P+ IGGS RRGV+ST Y ARK+G+ SAMP Sbjct: 14 RQILHIDMDAFYASVEKRDNPELEDKPVIIGGS--RRGVVSTCCYKARKYGLHSAMPMYR 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH L D Y+ S I++IF +T +EPLSLDEA+LDVT S++ G A Sbjct: 72 AQRLCPHGVYLRPDMDKYRRVSQEIKKIFLEFTPLVEPLSLDEAFLDVTGSLNLFGDAVN 131 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++I+ I ++LQLT S GVA KF+AK+ASD+ KP G + + FL LP+ K+ Sbjct: 132 IAEKIQTQISDQLQLTCSIGVATNKFIAKVASDLKKPAGLTHVPTGKEQDFLAPLPVDKL 191 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKC-----DLVMLLKRFGKFGRILWERSQGIDERDVNS 236 GVG+ + A++++ G T G++Q+ ++ L K F L ++G D+R+V Sbjct: 192 WGVGEKTTARIKSRGYHTIGELQQMLAKAQNINSLAKSFNITEDTLL-LAKGYDDREVVP 250 Query: 237 ERLRKSVGVERTMAEDIH---HWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 E KS+G E+T A+D+ +++ + + ++ RL K VK++ Sbjct: 251 EEPPKSIGQEKTFAQDLTAGSQYNQLIPHLLKFSEQVGARLRKAGYKG--KTVTVKIRDS 308 Query: 294 DFQQTTQEHVWPRLN-KADLIATARKTWDER--RGGRGVRLVGLHVTLLDPQMERQLVLG 350 F+ T++ P + ++ A A++ + +RL+G+ V+ L ++QL L Sbjct: 309 RFKTWTKQKTVPETDQDKEIYAHAQELLQNMNLKPSDEIRLLGVTVSNLVSSTQQQLSLD 368 Query: 351 L 351 + Sbjct: 369 M 369 >UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R0_DESRD Length = 397 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 130/353 (36%), Positives = 193/353 (54%), Gaps = 10/353 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA++E +D P L+ P+ +GG RGV+S A+Y AR+FGVRSAMP Sbjct: 3 RWILHVDMDAFFASIEQQDYPELQGRPVIVGGGE--RGVVSAASYEARRFGVRSAMPISQ 60 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP+ GR YKE S + + ++ +E S+DEAYLD+T + G Sbjct: 61 ARKLCPNGNFCHGRHKRYKELSRQVMTVLDGFSPCVEQASIDEAYLDITGTERLLGPPGE 120 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + ++Q I L+AS G+AP KF+AKIASD +KP G I ++ FL LP+ K+ Sbjct: 121 VGRALQQAIRVRTGLSASIGIAPNKFVAKIASDWDKPGGLTWIRAEQLQTFLDKLPVRKL 180 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVG ++A LE +G+ + G V++ R G+ G+ LW R+ GID+ +V K Sbjct: 181 PGVGPRTSALLERLGVESVGAVRRFSEAFWTDRLGEGGKQLWARAHGIDDSEVQPYHAPK 240 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLL-IARQGVKLKFDDFQQTTQ 300 S G E T+ +D + +I L E ER +++ +++ +K+++DDF T+ Sbjct: 241 SCGAEHTLPQDTEDEA---ILISWLLHEAERIGRELRREVMEAGTVTLKIRYDDFTTFTR 297 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP--QMERQLVL 349 P + DL + +++ R VRLVGL L P RQL Sbjct: 298 CRKLSPPTQSTQDLYSAGVTLLRQQQLQRPVRLVGLSAGNLAPMGSGRRQLSF 350 >UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteria RepID=Q1IRF1_ACIBL Length = 425 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 133/356 (37%), Positives = 198/356 (55%), Gaps = 11/356 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I HVDMD FF +VE +P+L+ + +GG R+ RGV+S A+Y ARKFGV SAMP Sbjct: 16 RVIFHVDMDAFFVSVEELFDPSLKGKAVVVGGHRDERGVVSAASYAARKFGVHSAMPLRT 75 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP + G + Y+E S E+ +++ ++E S+DEAYLD+T + HG Sbjct: 76 AAKLCPDAIFVNGHPERYREYSGKAFEVLKKFSPKVEMASIDEAYLDMTGTERLHGPPLK 135 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A + Q + +E +L S G+ + +AK+ SD KPNG I P + +FL L + KI Sbjct: 136 AAHALHQFMKSETKLNCSIGIGTSRLIAKVCSDQAKPNGVLYIVPGQEASFLAPLSVRKI 195 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGID-----ERDVNS 236 PGVGKV KL +G++ GD+ K D L +RFG++G L +S+G+D +RDV Sbjct: 196 PGVGKVFEQKLNEIGIKKVGDLAKLDDAFLRERFGEWGLALAGKSRGLDAGGYFDRDVAV 255 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 + KS+ E T D + EA+I RL + RR+ + +L +KL++ DF Sbjct: 256 DEGPKSISHEHTFNTDTRDQEKLEAMIARLSEMVCRRVRE--HELHARTVQIKLRYSDFT 313 Query: 297 QTTQEHVWPRLNKADLI--ATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVL 349 T+ H + + D + TAR + + GR +RL+G+HV D + +QL L Sbjct: 314 TITRAHSLEQPTQLDTVVAETARTLFRDNWQRGRTIRLIGVHVAGFD-DVPQQLDL 368 >UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychrophila RepID=DPO4_DESPS Length = 376 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 137/343 (39%), Positives = 199/343 (58%), Gaps = 5/343 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIH+DMD FFA++E RD P LR P+ +GG RGV++T Y AR++G+ SAM Sbjct: 3 MRKIIHIDMDAFFASIEQRDRPELRKKPLIVGGLPRGRGVVATCCYEARRYGIHSAMSAN 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCPH + R YKE S I IF YT ++EPLSLDEA+LDVT+ + +GSAT Sbjct: 63 RAYKLCPHAVFVKPRMVLYKEVSLQIMAIFREYTKKVEPLSLDEAFLDVTEYLQINGSAT 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A+EI I L+ASAGV+ KFLAKIASD+ KP G + P E F+ L + K Sbjct: 123 LLAREICALIKLRTDLSASAGVSYNKFLAKIASDLKKPGGISTVPPEEARQFIDRLSIGK 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGK++ +K++++G++T D+++ L+KRFGK G + ++G+DER V + R Sbjct: 183 FYGVGKITKSKMQSLGIQTGKDLRQYSKDFLMKRFGKAGSFFFYNARGLDERPVCPYQNR 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T+ +D + E I+ L L + L L +K+++ DF TT+ Sbjct: 243 KSIGKETTLVQDTNRPEEIRDILINLSSLLGKALE--NNSQLAQTLTLKIRYSDFTTTTR 300 Query: 301 EHVW--PRLNKADLIATARKTW-DERRGGRGVRLVGLHVTLLD 340 P AD+ + + +RL+G+ ++ L Sbjct: 301 SLSLQKPFSCPADIEECLPSLLTNCNLTHKPIRLLGISLSKLT 343 >UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=uncultured marine microorganism HF4000_008B14 RepID=B3T119_9ZZZZ Length = 380 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 126/351 (35%), Positives = 188/351 (53%), Gaps = 5/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H D+D F+AAVE+ D+P L + +GG E RGV++TA+Y AR FG+ SAMP Sbjct: 18 RHVLHADLDAFYAAVEVLDDPDLAGKAVMVGGDPENRGVVATASYEARVFGIHSAMPMRT 77 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++LCPH ++ RFD Y++ S + ++F +T +EPLS+DEAYLD+T++V Sbjct: 78 AVRLCPHGIIIHPRFDRYRQLSRAVMDVFHDFTELVEPLSMDEAYLDITEAVDAGRLPLA 137 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA E++ + + LT S G K +AKIASD++KP+G V+ P E FL L + K+ Sbjct: 138 IALELKNRVHENIGLTLSVGAGTSKSVAKIASDLHKPDGLVVVAPGEEREFLAPLAVGKL 197 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + +L A G+ T GD+ +RFGK + R+ G D V +ER K Sbjct: 198 WGIGPKTGQRLRADGIETIGDLASQSTGWFQRRFGKRALDVQSRAMGEDREPVRTEREAK 257 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV E T A D+ + RL + + L L VK + DF T++ Sbjct: 258 SVSAESTFATDLSGEGTLYPHLSRLAGRVAQHLE--GKQLKGKTVTVKARLADFTTFTRQ 315 Query: 302 HVWPRLNKAD--LIATARKTW-DERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P +D ++ TA + + E GR RL+G+ V+ E QL L Sbjct: 316 TTLPYPTGSDTVILETAWRLFSRELTPGRSFRLLGVGVSGFTEDEEFQLPL 366 >UniRef50_B0TZS5 DNA polymerase IV n=14 Tax=Francisella RepID=DPO4_FRAP2 Length = 350 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 170/350 (48%), Positives = 227/350 (64%), Gaps = 8/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD FFA VE + NP+L+D P A+GG+ +RGVIST NY AR++GVRSAMPT + Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++ CP+L LL F YK S IR+IF +T ++EPLSLDEAYLDVTD SATL Sbjct: 65 AMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYLDVTDVKEYKNSATL 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I+Q IFN+ LT SAGVAP K LAKIASD+NKPNG +VITP +V +F++ LP+ K+ Sbjct: 125 IAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVDSFVKDLPVKKL 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKVS KL+ M + TC D+Q+ L L+ +FGKFG L+ ++GID R+VN R+RK Sbjct: 185 FGVGKVSQEKLKNMNVETCLDLQQLSLATLVDKFGKFGSSLYNYARGIDNREVNPVRIRK 244 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD--FQQTT 299 SV VE T ED+ C + LY +L R+ + + G+ +KF D F +T+ Sbjct: 245 SVSVENTYLEDLKTLEACLEKLPNLYNKLTSRMTEEHYKSI---IGIVVKFTDTKFNKTS 301 Query: 300 QEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 V L+K L + ++ +RL+G+ + L +RQL L Sbjct: 302 LTRVAKTLDKKVLKNLIIEL--HQKQNYHIRLIGIGI-KLGEIDDRQLSL 348 >UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=DPO4_NEIMF Length = 352 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 148/349 (42%), Positives = 212/349 (60%), Gaps = 8/349 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE+R+ P L+ P+ + R VI A+Y AR+FG+ SAM Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAW-EGARSVICAASYEARQFGLHSAMSVAT 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP +P FD Y++ S I +F RYT IEPLSLDEAYLDVT + A+ Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYASE 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A+EIR IF E LTASAG+AP KFLAKIASD KPNGQFV+ P +V AFL+TLPL KI Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ K++++G+RT GD+++ + LL FG++G L++ +G DER V +ER R Sbjct: 183 PGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAERERL 242 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 + E T+ ED+ + + L +L R++ + ++ +KLK DF+ T+ Sbjct: 243 QISTEITLPEDL-PLEQAAGHLPHLAEDLWRQIT--RKNVEAQSVTLKLKTYDFRIITRT 299 Query: 302 HVWPRL--NKADLIATARKTWDERRG--GRGVRLVGLHVTLLDPQMERQ 346 + + + A L+ A+ RL+G+ V L P+ ++Q Sbjct: 300 LTYSSVLPDCAALLQAAQMLIARVPPQTEDAFRLIGIGVGHLVPKNQQQ 348 >UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCT4_9FIRM Length = 397 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 131/350 (37%), Positives = 190/350 (54%), Gaps = 5/350 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA+VE D+P R+ P+ +GG RGV+STA+Y AR+FGV SAMP Sbjct: 10 RWIMHVDMDAFFASVEQLDHPEYRNRPVIVGGL-SGRGVVSTASYEARRFGVHSAMPMKE 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP + GR+ Y E S IR+IF ++ +EPLS+DEA+LD+T G Sbjct: 69 ALERCPKGIFVEGRYGRYLELSQKIRQIFHEFSPLVEPLSIDEAFLDLTGMERLVGDIPA 128 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + I++ I E LTAS G+AP KFLAK+ASD+ KPNG +I +E + + LP+++I Sbjct: 129 LGLRIKERIKKETGLTASVGLAPNKFLAKLASDLKKPNGLVIIRQSEAASRIAPLPISRI 188 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G SA+ L G+RT GD+ CD L FGK + + G+D R V + R+ Sbjct: 189 FGIGARSASLLTRFGIRTIGDLAACDASFLSPLFGKNTETILRFAHGLDNRPVIPDEKRQ 248 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +D+ + I+ L E+ RL +K+K DF+ T+ Sbjct: 249 SLGRELTFEKDLRDHAVILEILWNLSQEVGFRLRSAGLSGY--TVTLKMKTQDFKVHTRS 306 Query: 302 HV--WPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P +++ + VRL+G+ V+ L PQ + L Sbjct: 307 LSSDLPLQLDEEIMERVKILTRRNPLRDPVRLLGVTVSHLVPQESSEQNL 356 >UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermophilum RepID=DPO4_SYMTH Length = 361 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 195/368 (52%), Gaps = 24/368 (6%) Query: 1 MR---KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAM 57 MR +IH+DMD FFA++E RDNP LR P+ +GGS RGV+ST +Y AR+FGVRSAM Sbjct: 1 MRTDLWVIHLDMDAFFASIEQRDNPRLRGKPVIVGGSPNSRGVVSTCSYEARRFGVRSAM 60 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 P+ AL+LCP + Y +R I R+T IEPLS+DEA+LDV+ Sbjct: 61 PSREALRLCPQAVFIRPNHAKYAAVGRQVRAIMRRFTDVIEPLSIDEAFLDVSG-----Q 115 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 A +A+E+++ I EL LT SAGV+ KFLAK+ASDM KP+G VIT L TLP Sbjct: 116 DAVRVARELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLP 175 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + K+ GVG S L A+G+ TCGD+ D L K FGK L ++GID R V Sbjct: 176 VRKLWGVGPASEQALHALGIYTCGDLLAYDPDTLRKHFGKRADELILLARGIDPRPVVPY 235 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD---- 293 R KS+G E T D ++ER L L + L VK+K++ Sbjct: 236 REAKSIGEENTFPVDQTDREYLSRLLERYADNLAEELR--RQGLYARTVTVKIKWNVFVE 293 Query: 294 ------DFQQTTQEHVW--PRLNKADLIATARKTWDE-RRGGRGVRLVGLHVTLLDPQME 344 DF Q T+ P + + AR+ + GR VRL+GL V L Q E Sbjct: 294 GGPKGGDFLQITRSQTLPMPTNDARTIGRVAREIFARVEWEGRKVRLLGLSVHNLVKQGE 353 Query: 345 R-QLVLGL 351 + Q L + Sbjct: 354 QVQAYLPI 361 >UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DPO4_BACCR Length = 415 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 127/355 (35%), Positives = 207/355 (58%), Gaps = 10/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+HVDM+CFFA+VE+ +P+L+ P+A+ G+ +ER+G+I T +Y AR++G+R+ MP Sbjct: 13 RVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLW 72 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L + F Y+EAS + ++ SR+T +I+P+S+DE YLD+TD GS Sbjct: 73 EAKRLCPQLVVRRPNFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYAL-GSPL 131 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+ I+Q + ELQL S G+AP FLAK ASDM KP G V+ ++P + L + Sbjct: 132 EIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLSVEA 191 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL- 239 + G+G+ +A KL + + T + K D ++ + GK G L +R++G D+R+V+ ++ Sbjct: 192 MHGIGEKTAEKLNEIHIHTIEQLAKGDEHIIRAKIGKHGIDLQKRAKGTDDREVDPSQMG 251 Query: 240 -RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KSVG T ++D+ E ++ERL + +RL K L+ + +K+ D + Sbjct: 252 QHKSVGNSMTFSKDMDEEKELLDMLERLSKSVSKRLQ--KRTLVSYNIQIMIKYHDRRTV 309 Query: 299 TQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVL 349 T+ + D+ A + W + G VRL+G+ T ++ + E +QL L Sbjct: 310 TRSKQLKNAIWEERDIFQAASRLWKQHWDGDSVRLLGVTATEIEWKTESVKQLDL 364 >UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LNT4_9FIRM Length = 403 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 188/345 (54%), Gaps = 5/345 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD F+A+VE RD+P R P+ +GGS RRGV++TA+Y AR FGV SAMP Sbjct: 3 RWIMHVDMDAFYASVEQRDHPEWRGKPVIVGGS-SRRGVVATASYEARAFGVHSAMPAVK 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + RFD YK SN I EI Y IEPLSLDEA++D++ + + Sbjct: 62 ARELCPDAVFVLPRFDVYKSVSNEIHEIMLHYAVEIEPLSLDEAFMDISGLCGKYETLGA 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + I+ I + L ASAG+AP KFLAK+ASD++KP+G +I + L LP+ ++ Sbjct: 122 VGRAIKAEIKEKTGLVASAGIAPNKFLAKLASDLDKPDGLRIIPYGKEKEILAPLPVRRL 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V+ KL G T GD+QK L G ++ S GID+R V + R K Sbjct: 182 WGVGHVTERKLRNAGFLTIGDIQKAPFAKLASVLGNQASLIQRLSFGIDDRAVEASRRIK 241 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +D+ ++ + I + +RL + K L +K++F F+ T+ Sbjct: 242 SIGDESTYEKDLTESADIDRQIAIHSDVVAKRLRRHK--LAGRTISLKVRFASFRTVTRS 299 Query: 302 HVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 ++ A A + GVRL+G+ + L P +E Sbjct: 300 LSLEEGTDLQEEIYAAALELKKRIYMNEGVRLIGVTASNLAPPLE 344 >UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damage-inducible protein P n=12 Tax=Acinetobacter RepID=B0VP90_ACIBS Length = 363 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 153/338 (45%), Positives = 211/338 (62%), Gaps = 8/338 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIH+DMD F+A+VE+R+ P LR +P+ I S R VI+ A+YPAR+FG+RSAM Sbjct: 1 MRKIIHIDMDAFYASVELRERPDLRHLPVVI-SSHHPRAVIAAASYPAREFGLRSAMSMS 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCP + ++ F+ Y+ S I IF +YT+ IEPLSLDEAYLDVT+++ SAT Sbjct: 60 QARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIASAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A IR+ IF + LTASAGVAP KFLAK+ASD NKPNG FVI P++V +F+Q LPL K Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQDLPLKK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KL+ + L T GD+QK + +L+ FGK+G+ L+ +QGID R V +ER R Sbjct: 180 IPGVGKVTQEKLQQLELHTLGDLQKIEEAVLVHHFGKYGQQLYLYAQGIDNRPVQAERAR 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 + + E T D ++C++ L ++ + L K L +KLK +FQ Sbjct: 240 QQISKETTFDSDFT-LAQCQSYWHGLAEKVWQSLE--KKQLNARGVNIKLKLKNFQTLQH 296 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGR--GVRLVGL 334 + P ++ DLI +E RL+G+ Sbjct: 297 SKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGV 334 >UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS21_DESOH Length = 384 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 139/338 (41%), Positives = 197/338 (58%), Gaps = 5/338 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA+VE D+P R + +G S RGV++ A+Y AR FGV SAMP AL Sbjct: 2 ILHVDMDAFFASVEQLDHPEWRGRAVVVGRS-SGRGVVAAASYEARVFGVHSAMPMSRAL 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP + P R + YKE S + EI + +E +S+DEAYLD++ HG+ I Sbjct: 61 KLCPDAIVAPPRMERYKEVSARVMEILDAVSPLVEQVSIDEAYLDISGCERLHGTPETIG 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + I++ +F+ L +T S GVAP+KFLAKIASDMNKP+G VI P F++TLP+ K+PG Sbjct: 121 KNIKKQVFDTLGITCSVGVAPIKFLAKIASDMNKPDGLMVILPEAADRFIETLPVHKVPG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG V+ +L MG+ T GDV + +L K+ GKFGR L E S+GID+ V KSV Sbjct: 181 VGSVTKKQLALMGIETLGDVVRLPDGVLSKKLGKFGRRLKELSRGIDDSRVVPWHPAKSV 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 E T++ D E + R ++ R L K+ + +K+K+ DF QTT++ Sbjct: 241 SEETTLSRDTAEKQELRHHLLRQAGDVCRHLQKLNARARV--VFIKIKYADFSQTTRQTT 298 Query: 304 W--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL 339 P + + A +++ + VRL+G+ VT L Sbjct: 299 LDAPVQSSDTIYRQASALLEKQTLAQKVRLIGVGVTEL 336 >UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria RepID=B9M459_GEOSF Length = 420 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 116/354 (32%), Positives = 192/354 (54%), Gaps = 10/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDM+ FFA+VE +++P LR P+A+ GS +R +++T +Y AR FGV++ M Sbjct: 13 RIIMHVDMNAFFASVEQQNDPRLRGKPVAVVGS-SKRTIVTTCSYEARAFGVKTGMALWE 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A CP+L L+ G+ Y S+ I ++ +T +E S+DEA+LD++ S+ G+ Sbjct: 72 AKSCCPNLILVVGKNREYTRISSLIMKLMYDFTPLVETFSIDEAFLDISGSLSLFGTPEN 131 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA ++ I ++ LT S G+AP K LAK+ASDM KP+G VI PAEV + P+ + Sbjct: 132 IASLLKARIGDQFGLTCSIGIAPNKLLAKLASDMQKPDGLTVIKPAEVALTMDRTPIRDM 191 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR- 240 G+GK + L +G+RTCGD+ + + +L ++FG G L G+D+ V + Sbjct: 192 CGIGKKTEKSLTMLGIRTCGDLGRFPVKLLRQKFGIVGEALHLMGLGVDDSPVVPQEESD 251 Query: 241 --KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD-FQQ 297 KSVG T+ +D+ + + +L + RR+ + + + +++ D F Sbjct: 252 LVKSVGHSMTLEKDLEKREDILRYLLQLAEMVGRRMR--RYGVAGKTVCLSVRYADFFTN 309 Query: 298 TTQEHVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 +++ P A++ A D + VRL+G+ ++ L Q E QL L Sbjct: 310 FSRQLTLPEYTNLSAEIYRGAVTLLDSVELTQPVRLLGVKLSNLRHQDE-QLPL 362 >UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PAP1_CLOTS Length = 414 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 172/354 (48%), Gaps = 7/354 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPT 59 MR I+H+DM+ F+A+ E + +L+ P+ + G R G++ TA+Y ARK+G+++ MP Sbjct: 1 MRHILHIDMNAFYASCEQSKDKSLKGKPVVVAGDPSKRHGIVLTASYEARKYGIKTGMPN 60 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A LC L FD+Y + S + I ++ +E S+DEA++DVT GS Sbjct: 61 WQARTLCNDAIFLKPDFDSYIQYSIKMINILKEFSPLVEQFSIDEAWVDVTGCEDLFGSP 120 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA +I+ I + L L S G++ K +AK+AS++ KP G + ++ + L + Sbjct: 121 IEIAHKIQSRIKDSLDLPCSIGISENKLVAKMASELKKPLGITELPLEKIKDMIWPLDVE 180 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 + +G + KL++ G+ T GD+ + L+ FGK G+ ++ + GID V + Sbjct: 181 NLIWIGSARSKKLKSFGINTIGDLANTPMTFLINLFGKPGKDIYYFANGIDLSPVRPYAI 240 Query: 240 -RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS G T+ D + + L + R+ K + + + +K ++F+ Sbjct: 241 TAKSFGNTITLPRDYTDIEDIKRGFLSLSEMVGSRMR--KQNFMGKTVSITVKDNNFKSI 298 Query: 299 TQEHVWPRLN-KADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMER-QLVL 349 T+ D+ A K + E +R++G+ V+ L E QL L Sbjct: 299 TRSRTIDYTVLTEDIFNAAMKLFKENYDTNFKIRMLGVSVSNLVKIDENIQLCL 352 >UniRef50_Q3II35 DNA polymerase IV n=3 Tax=Alteromonadales RepID=DPO4_PSEHT Length = 351 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 176/350 (50%), Positives = 228/350 (65%), Gaps = 3/350 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+K IH+DMDCF+AAVEMRDNP L ++P+AIGG RRGV+STANY AR++GVRSAM Sbjct: 1 MKKFIHIDMDCFYAAVEMRDNPKLANVPLAIGG-NSRRGVLSTANYIAREYGVRSAMSNY 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L ++PGR YK+ S IR +FSRYT IEPLSLDEAYLDVT S C GSAT Sbjct: 60 HAKQLCPDLVIVPGRMAVYKDVSTQIRAVFSRYTDLIEPLSLDEAYLDVTHSEQCKGSAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIAQ+IR I+N LTASAG+AP+KF+AKIASD NKPNGQFV+ P +V AFL LPL K Sbjct: 120 LIAQQIRADIYNATGLTASAGIAPIKFIAKIASDENKPNGQFVVLPDQVDAFLAQLPLGK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KL GL T DV+K + + + G FG L+++ G V++ER+R Sbjct: 180 IPGVGKVTLEKLNLKGLYTGQDVRKKGVNWMQQHVGNFGVSLYQKCAGEHIGRVSTERVR 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ VE T + + EC + L EL RL K + + + VK+KF +F T+ Sbjct: 240 KSLSVEHTYEYNKNSLQECLEQLPSLLEELTTRLNKQQLQNQVNKLSVKVKFANFVVTSA 299 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVT-LLDPQMERQLVL 349 + +LN +D+ + +R + VRL+G+ V PQ QL + Sbjct: 300 DQAHQQLN-SDIFSELLAKAYQRGLQQPVRLLGIGVGIKNQPQHNLQLSI 348 >UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q2KZS3_BORA1 Length = 360 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 149/355 (41%), Positives = 204/355 (57%), Gaps = 10/355 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKI+H+DMD F+A+VE RD P LR P+ + R V+ A+Y AR+FGV SAM Sbjct: 5 IRKIVHIDMDAFYASVEQRDRPELRGQPVVVAW-TGARSVVCAASYEARRFGVHSAMAVS 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP +P F+ Y+ S +REIFSR+T IEPLSLDEAYLDVT + SAT Sbjct: 64 RAQRLCPDAVYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVTVNKLGLPSAT 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+ IR I E LTASAGVAP KFLAKIASD NKP+G FV+ PA+V FLQ LP+ K Sbjct: 124 AVAEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKPDGLFVLRPAKVLEFLQPLPVRK 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PGVG+V+ A+LE++G+ T GD+ C L FG+ G L E ++G+DER+V ++ Sbjct: 184 VPGVGRVTQARLESLGIHTVGDLATCAPAELEHHFGRHGLRLHELARGLDEREVQPDQPL 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 + V E T D+ ++ ++RL + + K L +KLK D F+ T+ Sbjct: 244 QQVSAENTFERDLR-LADLGEALDRLAARVWEQAR--KKGQLGRTAVLKLKTDRFRLLTR 300 Query: 301 EHVW--PRLNKADLIATARKTWDE--RRGGRGVRLVGLHVTLLDP--QMERQLVL 349 P + +L A AR+ RL G+ ++ Q RQ L Sbjct: 301 SLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRLAGVGMSNFTDPAQSARQPDL 355 >UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=DPO4_EXIS2 Length = 360 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 136/351 (38%), Positives = 195/351 (55%), Gaps = 6/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD F+A+VE RD P L+ +P+ +GG RGV++T +Y ARK+G+ SAMP+ Sbjct: 4 RKIIHVDMDAFYASVEQRDRPHLKGVPVIVGGPPHARGVVATCSYEARKYGIHSAMPSRR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + RF+ Y+ S I E+F T +EPLSLDEAYLDVT++ SAT Sbjct: 64 AFQLCPRAVFVRPRFEVYRAVSAQIMELFLEVTPLVEPLSLDEAYLDVTENNLQMTSATH 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I I LTASAGV+ K +AKIAS KPNG V+ P V FL L + + Sbjct: 124 IAQYILAEIKRRTGLTASAGVSNSKLVAKIASGHQKPNGLTVLPPDAVLPFLSGLKIGDL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVGKV+ L+ G T D+Q+ + L G+ G L+ + G DER V R R Sbjct: 184 HGVGKVTEQTLQKHGFNTVADIQQSPIAELRGLLGRDRGTELYTMAHGEDERMVRPHRER 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T ED ++R + + L + +L+ +K K +DFQ ++ Sbjct: 244 KSIGSESTFEEDTEDIDTIFETLKREALSVVKTLN--QKELVCRTVTIKWKTEDFQSRSK 301 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD-PQMERQLV 348 + + ++ L+ K ++E +RL+G+ V+ L+ P + +QL Sbjct: 302 RYTFLEETADEDTLLRVTTKLFNEIEFSGPIRLIGMSVSHLEAPPLSKQLT 352 >UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM3_DESBD Length = 412 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 134/352 (38%), Positives = 176/352 (50%), Gaps = 9/352 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FF +VE D+P L+ P+ IG S RGV S A+Y ARK+G+RSAMP Sbjct: 13 RVILHLDMDAFFTSVEQADDPLLQGKPVVIGQSL--RGVASAASYEARKYGIRSAMPIVQ 70 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCPH LPGR Y+E S I I +E S+DEAY D++ + G Sbjct: 71 AKKLCPHAVFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYADISGTRRIFGPPEN 130 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ ++ I LT S G+AP KFLAKIASD NKP G I PA+VPAFL+ LPL +I Sbjct: 131 IARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKPGGLTFIPPADVPAFLRDLPLGRI 190 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGK +L +G+ T V + GK G L +R+ GID+ V K Sbjct: 191 PGVGKQFQEELRRIGVTTIPHVLAHPRTYWNELMGKRGAFLHDRACGIDDSPVVPGSDPK 250 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S E T+ D + E + + R L + L +K+KF DF T+ Sbjct: 251 SCSAENTLDRDTLDRTLLERWLLIQAERIGRELRGLGKKGL--TVTLKIKFQDFSSITRS 308 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P ++ AR + R VRL+G V+ Q L L Sbjct: 309 RTLARPTDITTEIFEAARMLLTAEKLPRPVRLIGTGVSNFR---FVQAELPL 357 >UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=C9KLE5_9FIRM Length = 395 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 125/342 (36%), Positives = 185/342 (54%), Gaps = 6/342 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++HVDMD FFA++E RD+ R+ P+ +GG RGV+ST +Y AR+FGV SAMP Sbjct: 5 RLVMHVDMDAFFASIEQRDHEEYREKPLIVGGL-SGRGVVSTCSYEARRFGVHSAMPIVR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + G + YK S I IF+RY +EPLS+DEA+LD+T S Sbjct: 64 ARRLCPQGIFVEGDYANYKAVSQQIFAIFARYAPVVEPLSIDEAFLDLTGMELLMESPRA 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A++++ I + L AS G+AP KFLAK+ASD+ KP+G +IT A L LP+ +I Sbjct: 124 YAEKLKAEIREKTGLVASVGIAPNKFLAKLASDLEKPDGLVIITEQTKQAVLDPLPVGRI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVG+ +AA+LEA+ +RT G +++ L++ FG L + GID R V Sbjct: 184 WGVGQKTAARLEALRIRTIGQLRRTPRERLVRAFGAHMADHLLALASGIDTRPVAPREPA 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T DI E ++ L ++ RL + +KL+ DF+ T+ Sbjct: 244 KSIGKEVTFPTDIESAEAVERVLLALSEKVGYRLRRHGCKGR--TVQLKLRLGDFRTYTR 301 Query: 301 EHVWPRLN--KADLIATARKTWDERRGGRGVRLVGLHVTLLD 340 ++ TA + +G+RL+G+ V+ D Sbjct: 302 SRTLAEATCYDREIYETALAFYRALGVKQGIRLLGISVSGFD 343 >UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus RepID=C5D272_GEOSW Length = 414 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 113/356 (31%), Positives = 185/356 (51%), Gaps = 11/356 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR-ERRGVISTANYPAR-KFGVRSAMPT 59 R I HVD + FFA+ E+ +P+L+ + + G ER+GV+ ANY A+ +FG+ + MP Sbjct: 10 RVIFHVDCNSFFASCEIARDPSLKGKAVVVAGDPKERKGVVLAANYIAKQRFGIYTTMPL 69 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A K CP L +L F Y+E S + + + +T +E S+DE YLD+TD GS Sbjct: 70 WEAKKRCPQLVVLKPDFHLYREISEKVFQFLATFTPVLERASIDEGYLDITDCYSL-GSP 128 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA++I++ + L + S G+AP KFLAK+AS+M KP G V+ +VP L LP+ Sbjct: 129 LDIAEQIQKELLQTLHIPVSIGIAPNKFLAKMASNMKKPLGITVLRKRDVPKVLWPLPVQ 188 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 ++ G+G +A KL ++G+ T G++ K + V L G G L E + GID R V+ E Sbjct: 189 EMHGIGDKTAKKLNSIGIFTIGELAKAEKVTLQNLLGITGVRLKEWANGIDPRPVDPESG 248 Query: 240 R--KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KS+G T+ ++ ++ L + R+ + ++ + + +++ +FQ Sbjct: 249 EKWKSIGSSTTLPRNVTEERILLEVLRDLAQSVSNRMK--QKGVVSSTVQIMIRYSNFQT 306 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVL 349 T+ W P ++ A G VRL+G+ + + E +QL L Sbjct: 307 ITRSKTWENPFQEAEEIFQRAVYLLKRHWNGNPVRLLGITAVDVFDKKEAVKQLDL 362 >UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica RepID=DPO4_RHOBA Length = 396 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 143/351 (40%), Positives = 204/351 (58%), Gaps = 8/351 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+A+VE RD P LR P+ +GGS E RGV++ A+Y AR++G+ SAMP A+ Sbjct: 2 ILHVDMDAFYASVEQRDRPELRGRPVVVGGS-EGRGVVTAASYEAREYGIHSAMPGSRAI 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCPH + GR D Y +REIF R+T ++PLSLDEA+LDV+ ++ HGS I Sbjct: 61 KLCPHADFVRGRLDHYASVGRAVREIFHRFTPVVQPLSLDEAFLDVSGTIRLHGSPREIG 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR+TI EL L AS G+AP+KF+AKIASD+ KPNG + V FL LP++++ G Sbjct: 121 INIRETIRRELDLPASVGIAPLKFVAKIASDIGKPNGFVEVPADGVREFLDPLPVSRLWG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VGKV KL+ +G RT D++ DL L + G++G LW + GID R V + L K + Sbjct: 181 VGKVGQTKLQRLGYRTIADLRVKDLDALKSQLGRWGEHLWNLANGIDRRQVVVDHLAKGI 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH- 302 G ERT AED+ A++ L + R + L + +K + +DFQ ++ Sbjct: 241 GHERTFAEDLSDIESLNAVVSYLSEQTAR--RLRRARRLASTITLKYRREDFQTFSRARK 298 Query: 303 -VWPRLNKADLIATARKTWDERRGGRG--VRLVGLHVTLLDPQME-RQLVL 349 P + +++ A + E R VRL+G+ + L +QL L Sbjct: 299 LSTPTDSTLEILQVAEELLLEMRSREPRSVRLLGISLGGLTDADAPKQLHL 349 >UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales RepID=C6CYA7_PAESJ Length = 422 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 191/356 (53%), Gaps = 9/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPA-LRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPT 59 R I+H+DM+ F+ +V + P + P A+ GS E R+G+I T +Y AR G+++ M Sbjct: 13 RVILHLDMNAFYCSVHEAEEPEKYKGKPTAVAGSVELRKGIIVTCSYAARSKGIKTGMTV 72 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A+++CP+L ++ F+ Y++ S +I YT +EP+S+DE Y+D+T S GS Sbjct: 73 RQAMRMCPNLIIIQPDFELYRKYSRGFMKIAREYTPLVEPISIDECYMDITGS-KIFGSP 131 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA+ +++ I E L S GVAP K LAK+ASDM KPNG V+ +VP L P Sbjct: 132 LEIAEALQKRIAEEWTLPCSIGVAPNKLLAKMASDMKKPNGLTVLRLRDVPTILWDKPCD 191 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 + G+GK +A KLE + +RT G + D +L+++FG +G + + GID +V ++R Sbjct: 192 VLHGLGKKTADKLERLRIRTIGQLAAADEELLIRQFGIYGSWMKSAAHGIDHSEVRADRE 251 Query: 240 R-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 + KS+G T+ D+ + I+ L + RRL + K L+ + + ++ D Sbjct: 252 QSKSIGHTTTLPYDVTDREDAHRILLNLADQTARRLRRQK--LMASTVQITIRKPDMATI 309 Query: 299 TQEHVW--PRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQLVLGL 351 T+ P + + A + +DE G RL+G+ + L + E + L L Sbjct: 310 TRSSTLRAPTHSTDMIYHEACRLFDEHWKGSEPARLLGVTLQNLTAEEETAVQLDL 365 >UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=C1F962_ACIC5 Length = 374 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 152/346 (43%), Positives = 198/346 (57%), Gaps = 8/346 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKI+HVDMD F+A+VE RD P LR P+ + R RR V+ A+Y AR+FGVRSAMP Sbjct: 14 RKIVHVDMDAFYASVEQRDAPELRGKPVVVAW-RGRRSVVCAASYEARQFGVRSAMPAVT 72 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP +P F YK S +REIF R+T IEPLSLDEAYLDVT + +AT Sbjct: 73 AERLCPQAIFVPPDFTRYKAVSRAVREIFERHTDLIEPLSLDEAYLDVTHNKTGLPTATK 132 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A IR+ I EL LTASAGVAP KFLAKIASD KP+G FVI P ++ FL L + +I Sbjct: 133 VAITIRRQIREELSLTASAGVAPNKFLAKIASDWRKPDGLFVIQPQDLATFLPPLAVGRI 192 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ +L +G+RT GD+Q DL L FG++G L+ ++G+D V R K Sbjct: 193 PGVGKVTEERLARLGIRTAGDLQHYDLATLESNFGRYGLRLYHLARGVDHSPVTPNRPTK 252 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV E T DI S E +I RL ++ A + + +KLK DF T+ Sbjct: 253 SVSAEDTFEADI-PLSATEPVIRRLSEKVWN--ASRREARIARTVVLKLKTGDFHIHTRS 309 Query: 302 HV--WPRLNKADLIATARKTWDERRGG--RGVRLVGLHVTLLDPQM 343 P + +L A A + G R RL+G+ ++ Sbjct: 310 LTPETPPASCEELTAIALSLRERVDLGADRLYRLIGVGLSNFRDPE 355 >UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_LEPIC Length = 364 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 147/361 (40%), Positives = 207/361 (57%), Gaps = 13/361 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD F+A+VE RD P + P+ +GG R V+S A+Y ARKFGVRSAMP Sbjct: 6 RKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVSAASYEARKFGVRSAMPCSK 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +L P + RF+ YKE S IREIF YT +E LSLDE YLDVT + A Sbjct: 66 AAQLAPQAIFVFPRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYLDVTFNKKNIPFAVT 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR IF +LTASAGV KF++K+AS+ NKPNG V+ P +V +F+ LP++ Sbjct: 126 IAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLPDDVISFIDPLPVSSF 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A K++ +G+ T D++ + L++ FGK G ++ S+G DER V S R RK Sbjct: 186 HGVGKVTARKMKELGIYTGKDLRTKSIDELVQHFGKMGIYYYKISRGEDERMVQSSRERK 245 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T D + + ++ + +ERRL K D +K+KF DF T+ Sbjct: 246 SLGAESTFDRDKLDYDDLLKQLKDVAVVVERRLE--KKDFAGKTLTLKIKFYDFSLKTRS 303 Query: 302 HVW--PRLNKADLIATARKTWDERRG--------GRGVRLVGLHVTLLDPQMER-QLVLG 350 P +L +TA + ++E + +RL+G+ ++ + + E L L Sbjct: 304 KTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIKAIRLLGISLSHPNSENEDPNLFLN 363 Query: 351 L 351 L Sbjct: 364 L 364 >UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=Q2S2C0_SALRD Length = 373 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 141/346 (40%), Positives = 196/346 (56%), Gaps = 7/346 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPA-LRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 R+I+HVDMD F+A +E RD P PIA+GG RGV+ TA+Y AR +GV SA P Sbjct: 19 RRIVHVDMDAFYAQIEQRDFPDRYAGKPIAVGGDP-PRGVVQTASYEARPYGVHSAQPAV 77 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L + R D Y+E S IR+I RYT +EPLSLDEAYLDVT+ S T Sbjct: 78 EADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRPSGT 137 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIA+ +R I+ E LTASAGV P KF+AK+ASD++KP+G V+ P E F+ LP+ K Sbjct: 138 LIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQMEFIAQLPIEK 197 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+G V+AAK++ +G++T D+Q+ L+ FGK GR + G D+R V +R R Sbjct: 198 FHGIGPVTAAKMQELGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRPVQPDRDR 257 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG ERT EDI + + + +RL + +KLK D Q +T+ Sbjct: 258 KSVGAERTFPEDIARAETMLDRLSPIAERVAQRLRQANRKGR--TVTLKLKSHDHQVSTR 315 Query: 301 EHVWPRLNKAD--LIATARKTWDE-RRGGRGVRLVGLHVTLLDPQM 343 + R +A+ L+ + VRL+G+ V+ L + Sbjct: 316 QTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLGISVSSLTDEE 361 >UniRef50_Q1N612 DNA polymerase IV n=1 Tax=Bermanella marisrubri RepID=Q1N612_9GAMM Length = 366 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 164/351 (46%), Positives = 224/351 (63%), Gaps = 14/351 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+++HVD DCFFAAVEMRD+P RDIP+AIGGS +RRGVIST NY AR +GVRSAMP+G Sbjct: 3 RQVLHVDCDCFFAAVEMRDSPQYRDIPLAIGGSSDRRGVISTCNYVARAYGVRSAMPSGQ 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP L L+ G + Y+ S + I Y E +S+DEAY++++ H + Sbjct: 63 ALKLCPDLMLIRGDMEKYRRVSREVMSIVESYGLAFEQVSIDEAYIEISP----HSPGKI 118 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IRQ + E+ +T S G+AP K+LAK+ASD NKPNGQFV+ P + F++TLP+ KI Sbjct: 119 IAQQIRQQVEAEIGITVSVGIAPNKYLAKVASDWNKPNGQFVVEPQALNEFVRTLPVGKI 178 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVG SA KL MG+ +C DVQ +L LLKRFG+FG+ L++RS+GID+R +++ R RK Sbjct: 179 PGVGPKSAEKLANMGIHSCADVQAIELADLLKRFGQFGKKLYDRSRGIDDRTLSNGRERK 238 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT-- 299 S+ VERT A DI E + + + L+ + R+ L VK+KF DFQ TT Sbjct: 239 SLSVERTFANDIESEEELQQVAQDLWLRFQSRIEANAIRLRDVTPFVKVKFADFQVTTLA 298 Query: 300 -QEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + + +LI AR+ R + +RL+G+ L Q Q+ L Sbjct: 299 NHQKTVDLDSFIELIQQARR-----RQEKSIRLIGIGARL--KQNLTQMEL 342 >UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=DPO4_XANOM Length = 359 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 151/348 (43%), Positives = 202/348 (58%), Gaps = 8/348 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKI+HVDMD F+A+VE RD+P LR P+ + R R V+ A+Y AR FG+RSAMP Sbjct: 1 MRKIVHVDMDAFYASVEQRDDPGLRGKPVVVAW-RGARSVVCAASYEARTFGIRSAMPAV 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP+ +P F YK S +REIF R+T +EPLSLDEAYLDVT + AT Sbjct: 60 RAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQAKTGMQLAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IAQ IR I E +LTASAG+AP KFLAKIASD KP+GQFVI P+ + AFL L + + Sbjct: 120 EIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRIDAFLLPLKVNR 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV KL A+G+ T D++ L L FG FG+ L+ R++GIDER V ++ Sbjct: 180 IPGVGKVMDGKLAALGIVTVADLRLRPLEELQAHFGSFGQSLYRRARGIDERPVEPDQDV 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 +SV E T +ED+ + I RL + LA + + + +KLK +F+ T+ Sbjct: 240 QSVSSEDTFSEDLA-LDALDTHILRLAEKTW--LATRRTERIGRTVVLKLKTSNFRILTR 296 Query: 301 EHV--WPRLNKADLIATARKTWD--ERRGGRGVRLVGLHVTLLDPQME 344 P +++ L A E RLVG+ ++ E Sbjct: 297 SCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFSNVEE 344 >UniRef50_C5BNY2 DNA polymerase IV n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BNY2_TERTT Length = 360 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 171/354 (48%), Positives = 228/354 (64%), Gaps = 7/354 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DCFFAA+E+R+NP L D P+A+GG RRGVIST NY AR++GV SAMP+ Sbjct: 6 RKIIHLDADCFFAALEIRENPDLADFPLAVGGDPGRRGVISTCNYLARQYGVHSAMPSAH 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP L + F YK+ S + EIF+R++ +IEPLSLDEA+LDV+D HGSATL Sbjct: 66 AKRLCPELVIRSSNFPLYKQVSAQMFEIFTRFSEKIEPLSLDEAFLDVSDCQQFHGSATL 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR+ + EL +T SAGVAP+KFLAKIASD +KPNG F +TP +V F++ LPL K+ Sbjct: 126 IAREIRRQVETELGITVSAGVAPIKFLAKIASDWSKPNGLFTVTPDKVTEFVKDLPLQKL 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ KL GL C D++ L++RFG+FG L S GIDER+V S R RK Sbjct: 186 PGVGKVTREKLAREGLLYCRDLESYSEHELVQRFGRFGANLKRMSVGIDEREVKSSRERK 245 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ +E T A DI E I++L LE R K++ + ++++ VKLKFDDF QTT E Sbjct: 246 SLSIETTFARDISSPGEIADQIDQLVVGLEERYNKLQRKVAVSKKFVKLKFDDFTQTTLE 305 Query: 302 HVWPRL----NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER-QLVLG 350 R + + W R R +RL+G+ ++ + + QL Sbjct: 306 SSVSRCGKIFSSQEFERMCYAAW--ARQKRPLRLLGVGLSFAERSHPQAQLSFP 357 >UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class) RepID=A5CQW8_CLAM3 Length = 430 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 130/351 (37%), Positives = 179/351 (50%), Gaps = 7/351 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+H+DMD FFAAVE+ + P LR P+ +GGS RGV+++A Y AR+FGVRSAMP A Sbjct: 22 TILHIDMDAFFAAVELLERPELRGTPVIVGGS-SGRGVVTSATYEARRFGVRSAMPMAQA 80 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L+LCP T++ G + Y S + IF T +EPLS+DEA+LDV + GS I Sbjct: 81 LRLCPQATVIGGHMEKYAHWSRVVMGIFRDVTPLVEPLSIDEAFLDVAGARGLFGSPAEI 140 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 IR+ + E LT S G A KF+AK+AS KP+G VI AE FL LP+ + Sbjct: 141 GAMIRRRVHAETGLTCSVGAASTKFVAKLASTRCKPDGLLVIPAAETLPFLHALPVGALW 200 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRK 241 GVGK + L GLRT D+ L L G G L + S G D R V++ R K Sbjct: 201 GVGKTTEEALLRRGLRTVADIADTPLPALQSMLGESAGARLHDLSWGRDPRRVSTHREEK 260 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +D+ + + RL + L +KL++ DF+ T+ Sbjct: 261 SMGHENTFHDDVTDPEIVRRELLGQATRVAERLR--RAGLTARTVSLKLRYSDFRTITRS 318 Query: 302 HVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVL 349 P + R +++ R G +RLVG+ LD R + L Sbjct: 319 RTLSEPTDVARRIYDEIRDVYEQVARPGDRIRLVGVRAEQLDDADNRAVAL 369 >UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 Length = 353 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 135/344 (39%), Positives = 202/344 (58%), Gaps = 8/344 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 RKIIH+DMD FFAAVE++DNP LR P+ IG + RGV+ST +Y AR FGV SAM Sbjct: 12 RKIIHIDMDAFFAAVEIKDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYEARAFGVHSAMS 71 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 + A + CP + G ++ YK IR IF RYT IEP+S+DEAYLDVT++ S Sbjct: 72 SKEAYERCPQAVFISGNYEKYKAVGLQIRAIFKRYTDLIEPMSIDEAYLDVTENKLGIKS 131 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A IA+ I++ I+ EL LTASAG++ KFLAK+ASD KP+G VI P + FL+ + + Sbjct: 132 AVKIARLIQKDIWQELHLTASAGISYNKFLAKMASDYQKPHGLTVILPEQAEDFLKQMDI 191 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 +K GVGK + +L MG+ T D+ + V L+ RFG+ G L+ +++GI V S R Sbjct: 192 SKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKARGIHNSPVKSNR 251 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 +RKS+G E+T + + + + + L ++ L + + I +K++++DF Sbjct: 252 IRKSIGKEKTYGKILRAEEDIKKELTLLSEKVALNLHQQEKAGKI--VILKIRYEDFSTL 309 Query: 299 TQEHVWP--RLNKADLIATARKTWDER-RGGRGVRLVGLHVTLL 339 T+ + + + A + ++E RGVRL+G+ +T Sbjct: 310 TKRKSIAQKTQDASQISQIALQLYEELSEKERGVRLLGITMTGF 353 >UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=DPO4_METMJ Length = 360 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 122/354 (34%), Positives = 186/354 (52%), Gaps = 8/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 R ++HVDMD FFA++E+R +P+L P+ +G + RGV+ST +Y AR++GV S MP Sbjct: 6 RIVLHVDMDSFFASIEVRRDPSLAGRPVIVGADPKGGAGRGVVSTCSYEARRYGVHSGMP 65 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A LCPH LP Y S I + SR+ RIE +S+DEAYLDV+D+ + Sbjct: 66 ISRAFDLCPHGVYLPVDRPFYASVSVEIMALLSRHAGRIEQVSIDEAYLDVSDA-GSFPA 124 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A I++ + E LT S GVAP K +AKIASD KP+G ++ P EV FL +LP+ Sbjct: 125 AGALAAAIKREVREETGLTCSVGVAPGKAVAKIASDFQKPDGLTIVRPDEVAGFLASLPV 184 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 +IPG+GK + L G+ T GD+ + D+ ++ R G+ G + ++GID+ +V Sbjct: 185 GRIPGIGKKTGEDLRQAGILTVGDLARRDVQEVIARLGRSGVRVHHLARGIDDGEVQGRE 244 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+ E T D + L ++ L +L VK+++ FQ Sbjct: 245 GCKSISRETTFEADTADPPVLAGTLAELADDVAETLR--ADNLRCRTVTVKVRYRGFQTH 302 Query: 299 TQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 T+ PR + + A G VRL+G+ +++L+ RQ + Sbjct: 303 TRSRTLPRFTSDPETIRRAASGLLLPFLNGEPVRLIGVRLSMLEGGCTRQASID 356 >UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales RepID=Q2IM85_ANADE Length = 418 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 137/352 (38%), Positives = 186/352 (52%), Gaps = 7/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+D+D F+A+VE D+P LR P+ +GG RGV+ A+Y AR+FGVRSA+PT Sbjct: 11 RTILHLDLDAFYASVEQLDHPELRGRPVIVGG-TGNRGVVCAASYEARRFGVRSALPTAR 69 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LP RF Y E S + +++ RYT +EPLSLDEA+LDVT S HG Sbjct: 70 ARRLCPDGVFLPPRFGRYSELSRRVFDVYRRYTPLVEPLSLDEAFLDVTASRALHGGGPD 129 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I+ + E L SAGVA VK AKIA+D+ KP+G V+ P V AFL LP+ ++ Sbjct: 130 IARAIKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDGLVVVPPGGVAAFLAPLPVGRL 189 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 GVG+V+ A L +G+ T GD+ + L G R L + G D R+V + Sbjct: 190 WGVGEVTEAALRRIGVATIGDLARMPESALAAALGPTHARGLRALACGEDPREVVPDEEA 249 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T +D+ E + + RRL L +K+K+ DF T+ Sbjct: 250 KSVGAEDTFDQDLLGRPALERELLAQAGTVARRLRAA--GLAGHVVTLKVKYADFTLVTR 307 Query: 301 EHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQMER-QLVL 349 R D + A R VRL G+ V+ ER QL L Sbjct: 308 RVTLERATDDDRAIFDAACAQLARVDLRRPVRLTGISVSGFAGDEERGQLGL 359 >UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli RepID=Q38YP4_LACSS Length = 376 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 194/358 (54%), Gaps = 10/358 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIG---GSRERRGVISTANYPARKFGVRSAMP 58 RKIIH+DMD F+A++E R+ P LR P+ I +GV++TANY AR++GV SAM Sbjct: 15 RKIIHIDMDAFYASIEEREQPDLRQKPLIIARDPSDTGGKGVVTTANYVARQYGVHSAMS 74 Query: 59 TGMALKLCP--HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 A +L P F Y+ S I +IF T +IEP++ DEAYLDVT++ Sbjct: 75 AQKAAELIPKHQAVFKTPNFPLYQSVSAQIHDIFHTVTDKIEPIAFDEAYLDVTENKLGL 134 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 + +++ I E QL +SAG++ KFLAK+ASD KP G+ ++ P + AFL L Sbjct: 135 THTIEVVAYLQKAILEETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSRL 194 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P+ K GVG+ + K++ +G+ T D+ + L++ FGK G L+ +GID R V Sbjct: 195 PIEKFRGVGQKTVPKMQDLGIMTGADLLAQSEMFLMQHFGKLGYGLYRHVRGIDNRPVEY 254 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 +R RKS+G E T + + + + ++ L EL +RL K + L +K++ ++ Sbjct: 255 QRERKSIGNEHTYGQPLISEEQVQVQLKSLAVELAQRLRKNQKHGL--TVVLKVRNRQYE 312 Query: 297 QTTQEHVWPRL--NKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ N A+L A A + W + G+RL+G+ VT L PQ + L L Sbjct: 313 TITKRKTLGEYVGNAAELEAIANQIWQSIGQAEVGIRLLGITVTNLAPQTFENITLPL 370 >UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM9_9FIRM Length = 409 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 5/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D++ FFA+ E+ +P+L P+ + G +R V+STA+Y AR+FGV SAMP Sbjct: 15 RVIYHIDLNAFFASAEILLDPSLEGKPVVVSGLT-KRSVVSTASYEARQFGVHSAMPINE 73 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP L ++ G Y++ S +YT R+E S+DE Y D++ ++H Sbjct: 74 ALKLCPQLVVVKGHHGYYEQLSEQFISYVKKYTDRVEQASIDECYADMSQAIHRFPRPLD 133 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A +++Q + +L L S GVAP KFLAK+ASDM KP G V+ EVP L LP+ + Sbjct: 134 LAWQLQQELLTDLHLKCSIGVAPNKFLAKMASDMKKPMGITVLRKQEVPVKLWPLPIEDM 193 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+GK +A +++A+G++T GD+ D L GK +R+ G D+R++ S+ K Sbjct: 194 RGIGKKTAPQMKALGIKTIGDLAAADPEQLRPLLGKNTMTYIQRANGEDDREIISDAEIK 253 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ T+ D E + +L +L R+ ++ D + + +++ DF + Sbjct: 254 SMSQSTTLNYDFSTEEEVRTLFRKLANKLSERM--IEEDKMGTIVSISIRYFDFNTNVRS 311 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P DL A + +DE + +R +G+ V L ++++ + L Sbjct: 312 RKLDHPVYRSEDLFELAMELFDENYEDQPMRHLGIGVGSLSSIHDQKIQMNL 363 >UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQX0_9ACTO Length = 445 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 134/352 (38%), Positives = 188/352 (53%), Gaps = 9/352 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FF +VE+ D P L P+A+GG+ RGV+S A+Y AR+FGV SAMP AL Sbjct: 23 ILHVDMDAFFVSVELLDRPELAGKPVAVGGAE--RGVVSAASYEAREFGVNSAMPVARAL 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 + CPHLT++P R Y E S I +I T +E LS+DEA+LDV + G IA Sbjct: 81 RACPHLTMIPPRPGRYSEVSRQIMDILHDVTPLVEKLSVDEAFLDVGGARRLMGGPVRIA 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 ++R I E+ + AS G+A K +AKIAS KP+G +I + AFL LP+ + G Sbjct: 141 TDLRARIRREVGVPASVGIAATKHVAKIASAHAKPDGLLLIPRSATIAFLHGLPVGALWG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRKS 242 VG+ + A+L G+ T G++ L + G+ G L+ + G D R V + R KS Sbjct: 201 VGEKTRARLANQGIETVGELADAGPERLARILGRAHGTHLYRLAMGQDPRPVQTSREEKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G E T E + + E I+ RRL + L +K++F DF T+ Sbjct: 261 IGKEETFFEHVADRGKLERILLAQAHATARRLR--RAHLTARTVAIKVRFADFTTITRST 318 Query: 303 VWPRLNK--ADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQME-RQLVLG 350 + R ADL A A+ +D G G+RL+GL + Q E QL LG Sbjct: 319 TFARPTDLAADLYAGAKHLFDSVAVSGEGLRLLGLRAEQIVDQREGVQLALG 370 >UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJE1_DESAH Length = 384 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 125/349 (35%), Positives = 188/349 (53%), Gaps = 6/349 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFAA+E RD+P P+ +GG +R V++TA+Y AR+FG+ SAMP MAL Sbjct: 2 ILHMDMDAFFAAIEQRDHPETAGRPLVVGG-NSKRSVVATASYEARRFGIHSAMPMFMAL 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 C HL ++P Y S I + + +T +E +S+DEA+LD+T GS I Sbjct: 61 DKCSHLIVIPPDKSKYAAVSGQIMTLLNEFTPLVEQVSIDEAFLDITGCERLFGSVEKIC 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 I+ I E LT S G + +KFLAKIASDMNKP+G +I + P +QTL + K+PG Sbjct: 121 VAIKDRIKQETGLTCSIGASHLKFLAKIASDMNKPDGIHIIKRTDTPEVIQTLAIKKVPG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG+ + +++ +G+ T GD+ + +L K+FGKF L S+GID + + KS+ Sbjct: 181 VGERAMDQMKQLGIITLGDISRIPHPILEKKFGKFATDLLNFSRGIDPSIIGTSGPIKSI 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 E T+ D + + + R+L +LL +KLKF DF Q T++ Sbjct: 241 SSESTLENDTLDMVVMKKHLLAHAQRVGRQLR--AKNLLATNITIKLKFSDFTQITRQTK 298 Query: 304 W--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD-PQMERQLVL 349 P + A +++ R +RL+G+ V+ P QL L Sbjct: 299 LMVPICASTAIYREACTLFEQTAKTRKIRLLGVGVSSFSTPDAPVQLEL 347 >UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=DPO4_DEHSB Length = 390 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 118/354 (33%), Positives = 180/354 (50%), Gaps = 7/354 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +R+++HVD+D FF +VE P +D P+ +GG ERRGV++ A+Y ARKFG+ S MP Sbjct: 3 IRRVMHVDLDAFFVSVEQAVRPEFKDKPVIVGGKPERRGVVAAASYEARKFGIHSGMPLI 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + G Y+E S I S ++ +EP+ LDEAYL+VT HGS Sbjct: 63 TAKHLCPQAIFIEGNHQLYREYSEKFMLILSDFSPFLEPMGLDEAYLEVTGFESLHGSIA 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A +IR+ I EL + AS G+A K AKIA++ KPNGQ + E +FL L +A Sbjct: 123 QMASKIRRRITAELGINASIGIANSKVAAKIATEQAKPNGQCEVPAGEEASFLAPLDIAV 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PG+GK + L+++G+ T G + L G + L + GID R V Sbjct: 183 MPGIGKKTEQHLKSLGIDTLGKLAALPASFLKSCLGTYAPYLSNAAMGIDNRPVEMPSEA 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ E T D + + EA + L ++ L K + +K++F DF T+ Sbjct: 243 KSISRETTFETDTRNQTFLEAKLSYLSEKITATLRKRGKQTRV--VQIKIRFADFTTLTR 300 Query: 301 EHVW--PRLNKADLIATARKTWDERRGG--RGVRLVGLHVTLLDPQMERQLVLG 350 + P ++ TA + + VRL+G+ ++ E+QL + Sbjct: 301 QKHLGQPASGNREIFQTALSLMNGILDSDRQAVRLLGVGISDFC-GPEKQLEID 353 >UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomycetales RepID=D1C0B2_XYLCX Length = 430 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 172/353 (48%), Gaps = 10/353 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA E+ P LR +P+ +GG RGV+ A Y AR FGVRSAMP A+ Sbjct: 23 IMHVDMDAFFALCELARRPELRGLPVIVGG--RGRGVVLAATYEARVFGVRSAMPMVSAM 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP ++P Y + S + + T +E +S+DEA+LDV+ + G T+I Sbjct: 81 RLCPQAVIVPPDHRRYTDVSRSVMATMAEITPIVEQISIDEAFLDVSGARRRLGPPTVIG 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 +R + +T S G+A KFLAK+AS KP+G ++ FL+TLP+ + G Sbjct: 141 ARLRAHVQAVHGVTCSVGIAKNKFLAKLASTHAKPDGMLLVPDEASVPFLRTLPVGALWG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKS 242 VG+ + A L G+ + + D+ L G G L + + G D R V +S Sbjct: 201 VGEKTEAVLARWGITSVAQLADTDVRTLQAAVGVVHGAHLHDLAWGRDPRPVVPTERERS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G E T D H + EA + L ++ R + ++ +K++ +DF+ T+ Sbjct: 261 IGNETTFGSDQHDLAAVEARLLELCDKVAARCRE--QGVVTRTVALKVRTNDFRTLTRSR 318 Query: 303 VW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQ--MERQLVLG 350 P DL AR+ G VRLVG+ L + +QL L Sbjct: 319 TLDGPTDVARDLYRVARELLAAVDLRGLPVRLVGVRAENLQERAGTAQQLTLD 371 >UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomycetales RepID=C6WDG0_ACTMD Length = 430 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 128/351 (36%), Positives = 181/351 (51%), Gaps = 8/351 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +HVDMD F+A+VE+RD P L +P+ +GG RGV+++ANY AR+FGVRSAMPT A + Sbjct: 31 LHVDMDAFYASVEIRDRPELARLPVVVGG-TAHRGVVASANYLAREFGVRSAMPTAHARR 89 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSATLIA 123 L PH LP F Y++ S + E+F + T +EPLSLDEA+LDV ++ + IA Sbjct: 90 LAPHAVFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFLDVGGALRRLRATPAEIA 149 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 +R + E +T S GVA KFLAK++S M KP+G V+ FL LP+ + G Sbjct: 150 ARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPDGLMVVPKDRALEFLHPLPVGALWG 209 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRKS 242 VGK +A +L+ +GL T GDV L+ L K G L+ ++G D+R V KS Sbjct: 210 VGKRTAEQLDRLGLETVGDVAAAPLLRLRKAVGVALAEHLYALARGHDDRPVVPYTREKS 269 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G E T D + + + RL L L +K++F DF T+ Sbjct: 270 IGAEETFEVDHFDRAVLKLELLRLSERTAASLR--AKGLRGRTVSIKVRFADFTTITRSK 327 Query: 303 VWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDP-QMERQLVLG 350 ++ ATA D+ VRL+G+ V L QL Sbjct: 328 TLRVATDVAREVYATATSLLDDHVPPGAVRLIGVRVEQLSEGAAGEQLAFD 378 >UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWI6_HALOH Length = 385 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 121/351 (34%), Positives = 187/351 (53%), Gaps = 6/351 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGG-SRERRGVISTANYPARKFGVRSAMPTGM 61 I+HVDMD FFA+VE DNP R P+ +GG E RGV+STA+Y ARK+GV+SAM Sbjct: 4 DIMHVDMDAFFASVEQLDNPEFRRKPVIVGGIDLENRGVVSTASYEARKYGVKSAMSVVE 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + GR Y+E S I IF+ YT +E +S+DEA+LD+T GS+ Sbjct: 64 ARRLCPEGIFVKGRHSRYREISEKIFRIFNTYTPLVEKVSIDEAFLDLTGCHRLFGSSVE 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I ++I+ I +L LTAS G++ KFLAK+AS M+KP+G F+I V L L + ++ Sbjct: 124 IGKKIKNKIKEQLGLTASIGLSYNKFLAKLASGMDKPDGFFIIDDNNVDKILNKLCVGEV 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+GK + L + G++T G ++ L GK G L+ ++GID+R V K Sbjct: 184 WGIGKKTEQLLLSKGIKTVGMLRHLSKSDLKGILGKQGLQLYYLARGIDDRHVEPGSDIK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ E T ++D+ E + + + + RRL K L + +K+++++ T+ Sbjct: 244 SISHEETFSDDLIDPDEVMSHLMNMSERVARRLR--KNCLKGSTVFIKVRYNNRVTLTRR 301 Query: 302 HVWPRL--NKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVL 349 + + T + + +RL+G+ + L QL L Sbjct: 302 TTIKEYVDDTDSIYRTGLLLIKKHNLLSKPIRLLGIGMANLTDNNGIQLSL 352 >UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GJQ9_KOCRD Length = 412 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 131/352 (37%), Positives = 180/352 (51%), Gaps = 8/352 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+ VE+ D P R P+ + GS R V+ +A+Y AR+FGV SAMP A Sbjct: 17 ILHVDMDMFYVGVELLDAPQHRGRPVIVAGS-GPRSVVLSASYEARRFGVHSAMPVSQAR 75 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 CP LL +AY S + +IF T R+E LS+DEA++DV+ ++ G IA Sbjct: 76 ARCPSAVLLEPHREAYAHYSRIVMDIFRSVTDRVEQLSVDEAFVDVSGAIRRCGPPVEIA 135 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + +R+TI LTAS GVA K +AKIAS KP+G V+ P AFL LP+ ++ G Sbjct: 136 RGLRRTIQQRTGLTASVGVAENKTVAKIASAHCKPDGLLVVAPEHTRAFLARLPVDRLWG 195 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 VG+ ++ L A GL T GD+ L L G G L + + G D R V R KS Sbjct: 196 VGRRTSETLRAAGLATVGDIAGTPLPRLHALVGVASGSHLQQLALGHDPRPVTPTREEKS 255 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G ERT D+ +E + ++ L E RL + L R G+KL++ DF ++ Sbjct: 256 LGAERTFQTDLSETAELKRVLLGLCHETAARLR--RHGLRAGRVGLKLRYADFTTISRSR 313 Query: 303 VW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLD-PQMERQLVLG 350 P + DL A D R + VRLVG+ L QL L Sbjct: 314 TLGHPVTSAHDLYTEAAGLLDALGRRPQAVRLVGIRAEKLVGADHALQLSLD 365 >UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class) RepID=C1A1E2_RHOE4 Length = 432 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 183/354 (51%), Gaps = 13/354 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+H D+D F+A+VE RD+P L P+ +GG GV+ A+Y A+ FGVR+AM G A Sbjct: 37 TILHADLDSFYASVEQRDDPTLAGRPVIVGG-----GVVLAASYEAKAFGVRTAMSGGQA 91 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 LCP ++P R AY +AS + ++F + +E +S+DEA+L+V G+ I Sbjct: 92 RSLCPQAIVVPPRMSAYSQASKDVFDVFHDTSPLVEGISIDEAFLEVGGLAKIVGNPLQI 151 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 +R+ + ++ L + G+A KFLAK+AS KP+G + P FL LP+ K+ Sbjct: 152 GANLRRDVAEQVGLPITVGIARTKFLAKVASAFAKPDGLLRVPPEGETEFLHPLPVEKLW 211 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNSERLRK 241 GVGK++A KL + T GD+ + D ++ G GR L+ S D R V + R R Sbjct: 212 GVGKITAHKLRNFDIVTVGDIARHDESSIVSILGGGAGRHLYALSHNRDPRPVRAYRGRS 271 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G + + H +E +A + L + RR+ + ++L+F DF + T+ Sbjct: 272 SMGAQHALGRGSHSRAELDASLMSLVDRVSRRMRSAQRTGR--TVTLRLRFADFTRATRS 329 Query: 302 HVW--PRLNKADLIATARKTWDE---RRGGRGVRLVGLHVTLLDPQMERQLVLG 350 H + A+L+ + DE +G+ L+G+ V+ LD QL L Sbjct: 330 HTLRRSTADTAELLNASMVLLDEAVPMIADKGITLIGVAVSNLDRDGAEQLELP 383 >UniRef50_C5RD20 DNA-directed DNA polymerase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RD20_WEIPA Length = 372 Score = 356 bits (915), Expect = 5e-97, Method: Composition-based stats. Identities = 132/357 (36%), Positives = 205/357 (57%), Gaps = 9/357 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 RKI+H+DMD F+A +EMRDNP + IP+ + + RGV++TANY AR GV SAM Sbjct: 16 RKILHIDMDAFYAQIEMRDNPEYKSIPLILANDPRKTGGRGVVATANYLARNLGVHSAMS 75 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 ALKL P + F Y+ S + +IF RYT+++EP++ DEAYLDVT+++ + Sbjct: 76 AAEALKLAPQAVFVTPNFSKYRGVSQQLHQIFKRYTNKVEPVAFDEAYLDVTENIPNINN 135 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A E++Q I+ EL+LT+S G++ KFLAK+AS+ NKP+G +I P ++ +FL TLP+ Sbjct: 136 AIQLAHELQQIIYEELELTSSVGISFNKFLAKLASEHNKPSGLTIINPEDIRSFLDTLPI 195 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 ++ GVG +A K+ ++G+R D+ L FGK G I +ER +G+D+R V +R Sbjct: 196 NEMRGVGAKTAEKMISLGIRNGKDLYDTPQNKLADEFGKSGYIFYERIRGVDDRPVVWQR 255 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 RKS+ ERT + ++ L +L L +K L +K++ ++FQ Sbjct: 256 ERKSMSKERTYGPFLDTEQAIMDELKDLAAKLTASL--IKSQLHGKTLVLKIRDNEFQTA 313 Query: 299 TQEHV---WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVLGL 351 T + ++ ++ A+ DE G +RL+GL +T L +VL L Sbjct: 314 THRATRLDFFPNDEDEIYHAAQDILDELGGYHHAIRLLGLTMTNLAALSFENVVLPL 370 >UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=DPO4_CLOK5 Length = 400 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 110/354 (31%), Positives = 178/354 (50%), Gaps = 8/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R I VDM+ FF + E +P + P A+ G + R G+I TANY ARKFGV++ M Sbjct: 3 RVIFLVDMNAFFISCESTRHPEIIGKPAAVAGDPKNRSGIILTANYEARKFGVKTTMVLH 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 LKLCP++ ++P YK+ S + I S+YT IE S+DEA+LD+T G + Sbjct: 63 KVLKLCPNIIIIPPDHCFYKQKSKEVMGILSKYTPVIEKNSIDEAWLDMTGCERIFGRSY 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 A+ I + I +EL L S G++ KFLAK+AS M KP G + ++ L LP+ Sbjct: 123 QTAECIMKHINSELGLDCSIGISENKFLAKMASQMKKPLGITKLWKKDIELKLWPLPVEF 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + G+GK +A KL M ++T G++ D L+K+ GK G + + + GID V + Sbjct: 183 MNGIGKQTARKLREMKIKTIGELANFDRRYLIKKLGKVGAEIHQFANGIDVSPVTPHSHK 242 Query: 241 --KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+G T+A DI + I+ L ++ K + +K+ +FQ Sbjct: 243 DVKSIGKSITLAHDISDIESAKVILMELSDKVGMTARKYNKKG--HTVQINIKYSNFQSI 300 Query: 299 TQEHVW-PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDP-QMERQLVL 349 T++ ++ + + ++ R VRL+G+ ++ + Q+ + Sbjct: 301 TRQRTITETYLVKEIYSAGIEMLEKNWNERLPVRLLGISLSGFSKYNEDEQISM 354 >UniRef50_Q2LU75 DNA polymerase IV n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU75_SYNAS Length = 362 Score = 356 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 117/345 (33%), Positives = 183/345 (53%), Gaps = 11/345 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGG--SRERRGVISTANYPARKFGVRSAMPT 59 R+I+H+DMD FFA+VE P L+ P+ IGG +RGV+STANY ARK+G+ SAMP Sbjct: 14 RRILHIDMDAFFASVEENRKPELKGKPVVIGGMGDPSKRGVVSTANYEARKYGISSAMPL 73 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A KLCP LP + AY S + + + T+ +E + +DEAYLD++++ Sbjct: 74 RTAYKLCPRAIFLPVDYKAYLAVSRYFKAVLLNITTIMEDVGIDEAYLDISENRDTD--- 130 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 I+++I+ I+ + LT S G+AP K LAKIASDMNKP+G + + ++ L LP+ Sbjct: 131 EKISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDGLTIFSGEDIENRLWPLPIR 190 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238 K+ G+G + L+A+ + T G + +L+ RFG +G L E S+GIDE + + Sbjct: 191 KLYGIGPKTEEHLKALNIATIGQLAALPPEVLVARFGPSYGHYLHEASRGIDESPIITSW 250 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS E T D +W + L E+ LA+ +K+++ DF+ Sbjct: 251 EPKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAE--KGYAARNVILKIRYSDFRTV 308 Query: 299 TQEHVWPRL--NKADLIATARKTWDER-RGGRGVRLVGLHVTLLD 340 T+ + + ++ A G+ +RLVG+ V L+ Sbjct: 309 TRACSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVRVGRLE 353 >UniRef50_A6DIV6 DNA polymerase IV n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIV6_9BACT Length = 354 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 148/339 (43%), Positives = 205/339 (60%), Gaps = 7/339 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMDCFFAAVE+RD P L+ +A+GG+ +RRGVI+ ANY AR FGV SA+ T + Sbjct: 6 RKIIHVDMDCFFAAVEVRDQPELKGKAVAVGGAAKRRGVIAAANYEARNFGVHSALSTAI 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP L ++ YKE S + +IF +YT +E +SLDEA+LDV++ HGS TL Sbjct: 66 ALRRCPELIIVRPNMSKYKEVSTEVFKIFRKYTHLVEAISLDEAFLDVSECPLHHGSGTL 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I++ I+ + L ASAG+AP K+LAKIASD KP+G + I P + F+Q LP+ KI Sbjct: 126 IAEAIKKDIYAKTGLRASAGIAPNKYLAKIASDWMKPDGIYTIPPENIEKFVQQLPVKKI 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 GVGK + +L GL TC D+QK + L K G L E ++GID R+V + R R Sbjct: 186 WGVGKETLRELRKFGLETCADLQKISVKNLAKLIGTNRAEELLELAKGIDNREVKANRER 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLA---KVKPDLLIARQGVKLKFDDFQQ 297 KS ERT D+ H EC ++ ++ E +++L + KP I +K+KF DF Sbjct: 246 KSYTRERTFDSDLSH-GECSDALKVIFDECKKKLKAYLEEKPQYKIKTSVLKVKFADFTS 304 Query: 298 TTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHV 336 TT E + + + K + + VRL+G V Sbjct: 305 TTVECGDLNFEWSVIESLLTKALERNQL--RVRLMGCGV 341 >UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECH9_9ACTN Length = 417 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 120/348 (34%), Positives = 181/348 (52%), Gaps = 9/348 (2%) Query: 8 DMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCP 67 D+D FFA+VEM D+P R P+ +GG + RGV+ST +Y AR+FGV SAMP+ A +LCP Sbjct: 30 DLDAFFASVEMLDHPEWRGKPLIVGGDADSRGVVSTCSYEARRFGVHSAMPSAEARRLCP 89 Query: 68 HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIR 127 G FD Y+E S + I + T R+E +S+DEA++D+T +A+ I Sbjct: 90 QAIWTHGHFDRYREVSAQVMAILADETPRVERVSIDEAFIDITPGRFAPEDPLQVARRIS 149 Query: 128 QTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKV 187 + L +T S GV K +AKIAS+ +KP G ++ P FL LP++ + G+G+ Sbjct: 150 DRV-AALGVTCSIGVGCNKTVAKIASERDKPFGLTIVRPGTEQRFLAALPVSAMSGIGRS 208 Query: 188 SAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS---ERLRKSVG 244 + +L M + T G++ + L FG G + +R+ G++ +V S ER KSV Sbjct: 209 AEERLRRMRIYTLGELSRAPESTLASIFGVNGERMRQRALGLEISEVTSLDEEREVKSVS 268 Query: 245 VERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW 304 ERT A+D+ + EA I L + RRL + L A +KLK+ T + Sbjct: 269 NERTFAKDLTERGDIEAAIALLGESVGRRLR--RQGLTGATVTLKLKYSYGSGRTAQRRL 326 Query: 305 PRLNKAD--LIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVL 349 P + +A A + D+ G VRL G+ ++ D Q Q L Sbjct: 327 PHPTDDENIFVAVALELLDKIWQKGMHVRLAGVGMSDFDHQGGIQTDL 374 >UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTM8_9FIRM Length = 381 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 132/355 (37%), Positives = 189/355 (53%), Gaps = 8/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMP 58 RKI+HVDMD F+A VE RDNPA+ PI I RG++ST NY AR++G+ SAM Sbjct: 25 RKILHVDMDAFYANVEARDNPAIAYKPIVIAKHPKLTGGRGIVSTCNYKAREYGIHSAMT 84 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A K CPH + G + Y+E S IR IF++YT IEP+SLDEAYLDVT + S Sbjct: 85 AAEAFKRCPHAVFIAGDWSHYQEVSQQIRTIFAQYTDLIEPMSLDEAYLDVTHNKLGIQS 144 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 AT +AQ I+ I EL LT S GV+ KFLAKIASD KP G V+TP + FL LP+ Sbjct: 145 ATHLAQRIQAQIKAELNLTCSIGVSYNKFLAKIASDYRKPFGITVVTPDQALEFLDDLPI 204 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 K GVG+ S G+ T D++ +L L++ FGK G+ L+ + +G+ + V R Sbjct: 205 DKFYGVGRQSVPYFHQRGIMTGADLRAIELEDLIEHFGKMGKSLYYKVRGVHDAPVQPHR 264 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 RKS+G E T + + + +L + L + +K+++DDF+ Sbjct: 265 ERKSIGKETTFIQFLAEEEGVLDALTQLTKRVVEILK--AKNFHAQTVTLKIRYDDFETL 322 Query: 299 TQEHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVLG 350 T++ P + + ++ W+ + VRL+G+ L + L Sbjct: 323 TRQLSLGSPSQDVEVISQAVQELWELHGHLHKSVRLLGVSTAGLIQLDKVHTQLS 377 >UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKS4_METHJ Length = 368 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 116/353 (32%), Positives = 175/353 (49%), Gaps = 8/353 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMPT 59 I+H+DMD F+A+VE+R+NP L P+ IG RGV+ST +Y AR FG+ SAMP Sbjct: 17 IILHLDMDSFYASVEIRNNPDLSGKPVVIGADPMQGTGRGVVSTCSYEARAFGIHSAMPI 76 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A LCPH +P Y + S I +I IE +S+DEAYLD++ + A Sbjct: 77 SQAYHLCPHAIFIPPHMATYAQVSATIMQILRGIAGEIEQVSIDEAYLDLS-CDRSYELA 135 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A I+Q I N++ LT S G+AP + AK+AS+ KP+G V++P + +FL+ LP+ Sbjct: 136 AHHAANIKQVIRNQVGLTCSVGLAPSRIYAKMASEQQKPDGLTVVSPDTLESFLKPLPVG 195 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 KIPG+GK SA L GL+T GD+ +CD+ L FG L + ++G D + Sbjct: 196 KIPGIGKKSAQVLINAGLQTIGDIARCDIQTLQDMFGSHAVRLHQIARGQDREGLRESGK 255 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 R+S+ E T D E + + L L + ++ G+++++ F T Sbjct: 256 RRSISREHTFLRDSTSPDEILGSLHTMILSLCHELEE--QNIYSRTIGIRIRYTGFITRT 313 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 + P + + E VRL+G+ + L Q L Sbjct: 314 KSVTLMQPTREVRVIECAIDGLFTEMWDRSPVRLIGVRFSGLIHPDPVQRSLS 366 >UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex degensii KC4 RepID=C9RDA6_AMMDK Length = 385 Score = 354 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 185/363 (50%), Gaps = 19/363 (5%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M++I+ D+D FFAAVE RD+P LR P+ +GGS RGV++T +Y AR FGVRSAMP Sbjct: 1 MQEILLCDLDAFFAAVEQRDHPELRGKPVIVGGSLTGRGVVATCSYEARSFGVRSAMPLK 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 AL+LCP LLP Y+E + + I+ R+T IE +S+DEAYL V G Sbjct: 61 KALRLCPQAILLPVNISRYREVAAEVLAIYRRFTPFIEVVSIDEAYLGVPS-----GEGL 115 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+ I++ + EL L S GV+ K LAK+A D+ KP G + P EVP L LP+ Sbjct: 116 AVARAIKEAVRKELDLPLSIGVSVNKLLAKVACDLAKPQGLKALWPEEVPQVLWPLPVGV 175 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PG+G + +L+A G++T GD+ L +L G E S G+D R + R Sbjct: 176 LPGIGPKTERQLQAKGIKTVGDLAAAPLYLLKMLLGSEALRFKEYSHGVDRRGLVLSRPP 235 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 S E T +D+ + RL +L RL + L +KL+F DF+ T+ Sbjct: 236 LSFSKETTFPQDVQEPEVVRGALMRLAEDLGYRLR--QNGYLARSVTLKLRFADFRTVTR 293 Query: 301 EHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLL----------DPQMERQLV 348 D + TA + + + RLVG+ V L D Q ER+ + Sbjct: 294 TRCLAEGTNRDSLIYRTAWELFQKFASSPPWRLVGIKVAELSNWKQLSWLEDEQEERERM 353 Query: 349 LGL 351 L L Sbjct: 354 LAL 356 >UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Rothia mucilaginosa RepID=D2NU69_9MICC Length = 479 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 125/358 (34%), Positives = 180/358 (50%), Gaps = 14/358 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FF VE+ +NPALR PI + R V+ +A+Y AR GVRS MP Sbjct: 26 RVIMHLDMDAFFVNVELLENPALRGEPIIVAPL-GPRSVVCSASYEARAHGVRSGMPLSR 84 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A L P+ T+LP R D Y+ S + I + + +E +S+DEA++D+T + Sbjct: 85 ARNLSPNATVLPLRGD-YRHYSRAVMAILNDLSPYVEQVSVDEAFVDLTGAYLHGQDPVA 143 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +AQ R I EL L +SAGVAP K LAK+AS +KPNG +VI P V FL ++ + Sbjct: 144 LAQSARDRIAQELSLPSSAGVAPNKLLAKMASTGSKPNGLWVIPPERVQEFLDPRKVSNL 203 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVG S +L G+ T ++ L L +RFG G LW ++GIDER V +ER Sbjct: 204 WGVGVKSTEQLSRYGIHTIAQMRSMSLDWLKERFGTAQGEHLWAMARGIDERPVVTEREE 263 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T D E A I L +L +RL L +K+++ F+ T+ Sbjct: 264 KSMGGEHTFETDTTDAQEVSAAIRELSLKLGKRLRAAGK--LAGGLSLKIRYSTFETHTR 321 Query: 301 EHVW--PRLNKADLIATARKTWDE------RRGGRGVRLVGLHVTLLDPQME-RQLVL 349 P + + + A + + R +RL+G+ L + Q L Sbjct: 322 AIALNVPVDSGMQIASLALEALRADEILVGQAAPRALRLIGVRAEKLAHAEDGVQQTL 379 >UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GF38_9DELT Length = 409 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 128/349 (36%), Positives = 185/349 (53%), Gaps = 11/349 (3%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD FFA++E RD+P LR P+ +G + +RGV++ A+Y AR+FG SA P +A + CP Sbjct: 1 MDAFFASIEQRDDPRLRGKPVLVGHA-GKRGVVAAASYEARRFGCHSAQPMAVARRRCPQ 59 Query: 69 LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQ 128 ++PGR + Y S + EI +T +E LS+DEA+LD++ + HG + A+ IRQ Sbjct: 60 AVIVPGRHEVYLGVSAELFEILEGFTPVVEGLSIDEAFLDMSGTQRLHGPPRVAAERIRQ 119 Query: 129 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVS 188 T+ L+LT S G+A KF+AKIASD +KP+G V+ P AFL LP+ ++ GVG + Sbjct: 120 TVAERLRLTCSVGIASAKFIAKIASDQDKPDGLTVVEPGRERAFLHRLPVRELWGVGPRT 179 Query: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERT 248 LE G+RT GD+ + L L + G+ GR L + S G+D R V+ R RK V E T Sbjct: 180 QEVLERYGVRTIGDIAELGLETLERDLGEHGRHLHQLSVGVDPRPVSPGRERKQVSHENT 239 Query: 249 MAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW--PR 306 ED+ E E + R + RL V L + +KL+ F T++ P Sbjct: 240 FGEDLRSRPEIEDWLLRQSTRVADRL--VAKGLHGRKVHLKLRDASFTTWTRQCSLDEPT 297 Query: 307 LNKADLIATARKTWDERRGGRG-----VRLVGLHVTLL-DPQMERQLVL 349 + A AR D +RL G+ V+ RQL L Sbjct: 298 QEARVIFARARALLDRLEAEGKLRALRIRLTGVGVSDFRRDAPARQLEL 346 >UniRef50_D1JEL0 DNA polymerase IV n=1 Tax=uncultured archaeon RepID=D1JEL0_9ARCH Length = 363 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 185/362 (51%), Gaps = 17/362 (4%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGG---------SRERRGVISTANYPARKF 51 +R I+HVDMD FF++VE R+ P L+ +P+ +GG + RGV+ST +Y ARK+ Sbjct: 5 VRVILHVDMDSFFSSVEEREKPKLKGLPVIVGGKITPEWEKEDSKIRGVVSTCSYEARKY 64 Query: 52 GVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD 111 G+ SAM A KLCP T LP YK S I I +Y ++E +S+DEA+LDV+ Sbjct: 65 GIHSAMALSKAYKLCPDATFLPVNMPLYKHVSGEIMNILRKYADKMEQVSIDEAFLDVST 124 Query: 112 SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA 171 V A A+ I++ I E LT S G+AP K +AKIASD KP+G V+ E A Sbjct: 125 KVEDWNDAREHAKRIKKAIQVEEGLTCSIGIAPNKTIAKIASDFVKPDGLTVV--EEAKA 182 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDE 231 FL L + IPGVG + L MG+ G + D+ L+ G+ G+ L + GID+ Sbjct: 183 FLAPLDVKNIPGVGPKTDKILRMMGIDQIGQLASGDVQKLVAAIGQSGKRLHLVANGIDK 242 Query: 232 RDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 +V + +RKS+ ERT D S ++ L E+ + + +K+K Sbjct: 243 SEVEEKWVRKSLSRERTFVNDTRDASVLTKCVDALAEEVYNAMTDA--GFVFKTVSIKVK 300 Query: 292 FDDFQQTTQEHVWPRL--NKADLIATARKTWDER--RGGRGVRLVGLHVTLLDPQMERQL 347 F+DF T+ + + L TA + E + RL+G+ ++ L E+Q+ Sbjct: 301 FEDFTIATRAKTLKTYHCDLSTLKRTANELMTELNNAKSKKKRLIGVRISNLGAVDEKQM 360 Query: 348 VL 349 Sbjct: 361 RF 362 >UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I5X9_METB6 Length = 365 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 126/353 (35%), Positives = 190/353 (53%), Gaps = 8/353 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 R ++H DMDCF+AAVEM D+P + + +G + RGV+STA+Y AR FGVRSAMP Sbjct: 11 RIVLHADMDCFYAAVEMHDHPEIAGKAVVVGADPQGGAGRGVVSTASYEARAFGVRSAMP 70 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A +LCP L Y S I IF R++ +S+DEA+LD++ V + Sbjct: 71 ISQAYRLCPGAVYLRPDMARYAAVSAEIMGIFKETGYRVQQVSIDEAFLDISP-VRSFDT 129 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A ++QTI + + +T S GVAP K +AKIAS KP+G V+TP FL LP+ Sbjct: 130 ARDLAVRLKQTIRDRVGITCSLGVAPSKIVAKIASGHQKPDGMTVVTPDSARDFLAPLPI 189 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 KIPG+G + A++EA+G+ T G++ CD+ +L+ FG+ +L E + G D +V Sbjct: 190 RKIPGIGGKTGAQIEALGITTIGNLATCDIQVLVGAFGRSAGLLREAALGHDNSEVVERD 249 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+ E T A D E A +E L E+ + +A L +++++ F Sbjct: 250 GVKSISKETTFANDTEDPKEIAATMELLVREVAQAIAD--EALQFKTVTIRVRYAGFVSK 307 Query: 299 TQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T+ ++A + A A + E G+ +R +GL ++ L Q RQ L Sbjct: 308 TKARSLLHYHNDEAAIRAAAGELLRELWDGKPIRRLGLRLSTLRHQDSRQQTL 360 >UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ51_9FIRM Length = 395 Score = 353 bits (906), Expect = 7e-96, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 191/354 (53%), Gaps = 9/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R HVD++ FFA+ E+ +P+L+ PI + G + +R V+STA+Y AR +G+ SAM + Sbjct: 3 RIYFHVDLNAFFASAEILRDPSLKGKPIVVSG-QTKRSVVSTASYEARAYGIHSAMSIIL 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP L ++ G + Y+ S+ I ++ +E S+DE Y+DVTD + + Sbjct: 62 AKKLCPDLEIIEGHYSYYRSLSDEFMTIVRSFSPYMEKASIDECYVDVTDVIQQYKHPLD 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A +++ I+ + L S G+ P FLAK+ASDM KP G V+ +V A L LP+ K+ Sbjct: 122 LAVLLQKAIYQKTGLGCSIGIGPNLFLAKMASDMKKPMGITVLRIRDVEAKLWPLPVHKM 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKC-DLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+G+ + K+EA+G++T GD+ + L K F L E+ +GID + + R Sbjct: 182 RGIGRKTLPKVEALGIKTIGDLANYQPIQDLGKIFKNSTDSLLEKCRGIDRTPLELDWQR 241 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+GV T+ EDI + E ++ L +L +L K K +++ + +F+ ++ Sbjct: 242 KSLGVSETLLEDISDYEELRGLLRSLSKKLHHQLEKEKRIGRA--ISIRITYYNFRNVSR 299 Query: 301 EHVWPR--LNKADLIATARKTWDERRG-GRGVRLVGLHVTLL--DPQMERQLVL 349 + + D+ A + +D+ VRL+G+ +T + Q +QL L Sbjct: 300 SLSVKQGIYLEPDIFDLALQLFDQYWEYDEPVRLLGITITDFMDEHQAIQQLNL 353 >UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomycetales RepID=C5BW73_BEUC1 Length = 415 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 121/352 (34%), Positives = 174/352 (49%), Gaps = 8/352 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA+VE+ P LR P+ +GG E RGV+ A Y AR FGV SAMP A Sbjct: 23 ILHVDMDAFFASVELIRAPDLRGRPVIVGG--EHRGVVLAATYEARAFGVHSAMPMTRAR 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 LCP ++P Y+E S + + + T +E +S+DEA+LDV+ + GS IA Sbjct: 81 ALCPQAVVIPPDHARYEEVSRVVMGLLADVTPVLEQVSVDEAFLDVSGARRRLGSPVAIA 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR I Q+ AS GVA KFLAK+AS KP+G ++ A FL +LP+ + G Sbjct: 141 TAIRSRIREVAQIPASVGVASTKFLAKLASQTAKPDGLLLVPEAASVPFLHSLPVGALWG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 VG+ +AA+L G+ + + +L +R G+ G L++ + D R V R+ KS Sbjct: 201 VGERTAAQLREWGIESVEQLAHTPPDVLQRRLGRAGGARLYDLAWNRDPRPVTVARVEKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 + E T D+ +E + RRL + L +K++ DF T+ Sbjct: 261 ISSEHTFVTDVTDAAELGRTLLEQAHRCARRLR--RGGFLARGVTIKVRMSDFTTLTRSR 318 Query: 303 VWPRLNK--ADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVLGL 351 + D+ A AR R GVRL+G+ V L + L L Sbjct: 319 QLDHPSDVAHDVYAAARALLAAVTIPRDGVRLLGVRVDQLTAAAATPVQLAL 370 >UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIK9_HALO1 Length = 409 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 136/359 (37%), Positives = 195/359 (54%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++HVD+D FFA+VE RD+P+LR P+ +GGS E RGV++ A+Y AR++GV SAMP + Sbjct: 6 RTVLHVDLDAFFASVEQRDDPSLRGKPVLVGGSAE-RGVVAAASYEARRYGVHSAMPMAV 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP ++ Y EAS I ++ +EPLSLDEA+LD+T S G A Sbjct: 65 ALRRCPQAVVVRHSMGRYAEASRAFFAILDHFSPLVEPLSLDEAFLDLTGSERLLGDART 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +AQ I+ + EL L S GVA KFLAKIASD++KP+G V+ P V +FL LP++++ Sbjct: 125 VAQTIKDRVRAELSLVVSVGVASTKFLAKIASDIDKPDGLCVVEPDRVESFLHPLPVSRL 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVG V+ KL MGLRT GDV + +L R GK G L + G D R V Sbjct: 185 WGVGAVTQDKLHQMGLRTIGDVARYPSSVLSARLGKSMGAHLSALASGYDPRPVERPGKP 244 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 S+G E T D+ S+ A++ + RL + + +K+K+ DF+ T+ Sbjct: 245 VSIGHEETFEVDLGRKSDIAAVLLGQADRVAARLRRADLRARV--VQLKIKYADFRLLTR 302 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGR------GVRLVGLHVTLLDPQME-RQLVLG 350 ++ + A A E VRL G+ ++ L+ + RQL LG Sbjct: 303 RRSLADATVDGGVIGAVAVAMLGELEVAENRGKAYAVRLCGVSLSGLEDREGPRQLTLG 361 >UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiales RepID=A9KNH1_CLOPH Length = 400 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 109/360 (30%), Positives = 186/360 (51%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVE----MRDNPA---LRDIPIAIGGSRE-RRGVISTANYPARKFGV 53 R I HVD++ F + E + +P LR IP A+GG ++ R G++ + A+ FG+ Sbjct: 6 RLIFHVDVNSAFLSWESVHRLAADPESIDLRTIPSAVGGDKQSRHGIVLAKSTQAKSFGI 65 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 + P AL+ CP L ++P F+ Y S + + S YT + S+DEA+LD+TD+ Sbjct: 66 VTGEPLTHALQKCPSLVVVPPNFEVYTRYSERLMNLLSEYTPTLNQFSIDEAFLDMTDTY 125 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 H G+ IA +IR + EL T + G++ K LAK+ASD KPN + P+E+P + Sbjct: 126 HLFGAPMDIANQIRDRVLKELGFTVNIGISTNKLLAKMASDFKKPNLCHSLFPSEIPEKM 185 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ ++ VGK + AK +G+R+ D+ ++ +L G K+ ++ E + GIDE Sbjct: 186 WPLPVEELFFVGKSAKAKFGILGIRSIYDLAHTNVNILKTHLGNKYSALIHEYANGIDEE 245 Query: 233 DVN-SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 V ++ K G T+++D+ + + ++ L + RL ++ + V++K Sbjct: 246 PVEVTDPKAKGCGNSITLSQDVIDNAIAKQVLLALSETVGARLRS--SNVSCSCITVEIK 303 Query: 292 FDDFQQTTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + +FQ T + V P A + A + +DE +RL+G+ T LD Q+ L Sbjct: 304 YTNFQTYTHQTVLPHQTNTTATIYEAACRLFDEFWDNSPIRLLGIRTTKLDDTDFSQISL 363 >UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteobacteria RepID=Q2RNH1_RHORT Length = 421 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 132/345 (38%), Positives = 188/345 (54%), Gaps = 6/345 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I H+D D F+A+VE RDNP+LRD P+ +G RGV +TA Y AR+FG RSAMP Sbjct: 37 DIAHIDCDAFYASVEKRDNPSLRDRPLIVGH-PGGRGVATTACYIARRFGARSAMPMFKC 95 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L+LCP ++P YK S +R I T R+EPLSLDEAYLD+++ H + Sbjct: 96 LELCPEAVVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEHRFARPPAV 155 Query: 123 A-QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + I + + E+ +T S G++ +FLAK+ASDMNKP G VI AE PA L +P+ ++ Sbjct: 156 SLATIARRVEREIGITVSIGLSSNRFLAKLASDMNKPQGFTVIDEAEAPALLAPMPVKRL 215 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG + +L +GL T GD+Q LL RFGK GR L + G R ++ +R K Sbjct: 216 HGVGAATERRLAELGLHTIGDLQGRPEADLLARFGKIGRALHAHAWGRGGRTISPDRETK 275 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ- 300 S+ E T D+ + + L + R L + L A +KLK DF+ T+ Sbjct: 276 SISAETTFERDLSRLPDLARALGPLSERVARALT--RNALAGATVVLKLKTHDFRILTRH 333 Query: 301 EHVWPRLNKADLIA-TARKTWDERRGGRGVRLVGLHVTLLDPQME 344 + +A++IA AR+ + GR RL+G+ + L P E Sbjct: 334 ARLGDPTARAEVIAGAARRLLERETDGRRFRLIGVGMADLRPGSE 378 >UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_PELTS Length = 402 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 107/357 (29%), Positives = 175/357 (49%), Gaps = 11/357 (3%) Query: 1 MRK-IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMP 58 MR I+ DM+ F+A+V P L+ P+ +GG RR G++ A+ A+ GV++ M Sbjct: 1 MRCPILLADMNSFYASVHQAMEPRLKGKPVIVGGDPARRHGIVLAASVEAKACGVKTGMT 60 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A LCP L R Y S I I ++ +EP S+DEA++DV+ GS Sbjct: 61 VREAAALCPQGIFLKPRHSHYINFSARIIRIMKDFSPLVEPFSIDEAFMDVSGCGLLFGS 120 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 + IA +++ I NE+ + S GV P K LAK+A+ M KP+G ++ +VP + LP+ Sbjct: 121 SLEIAVKLKARIKNEVGVLCSVGVGPNKLLAKMAAGMQKPDGLTLLDFPDVPVKIWPLPV 180 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS-- 236 ++ GVG +L + + T GD+ + L +L ++FG G IL + GID V+ Sbjct: 181 RELFGVGSRLEKRLRDLNIHTIGDLARYPLQVLKQKFGLVGHILHLSASGIDYSPVDPCS 240 Query: 237 -ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 ER+R S+G + T+ D ++E + +I L + RR+ + LK DF Sbjct: 241 LERVR-SIGHQITLPRDYWGYNEIKVVILELCEIVCRRVRL--GGYAGRTVSLTLKDTDF 297 Query: 296 QQTTQEHVW--PRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQLVL 349 ++ P + ++ A + + + VR+VG+ + L QL L Sbjct: 298 LWLSRARTMNYPTASADEVYRVAVQLLHQHWPPWKPVRMVGVSLAGLVKNRAEQLDL 354 >UniRef50_C0ZB00 DNA polymerase IV n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB00_BREBN Length = 350 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 133/353 (37%), Positives = 190/353 (53%), Gaps = 14/353 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+KI+H+D+D FFA+VE D P LR P+ +GG RGV+ST +Y ARK+GVRSAMP Sbjct: 1 MKKILHLDIDAFFASVEQLDRPELRGKPVIVGG-TGNRGVVSTCSYEARKYGVRSAMPVA 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 MA K CP LP R+ Y E S +R+IF+ YT R + + LDEAYLDV+ + +A Sbjct: 60 MARKKCPQGYYLPVRYSRYIEKSAEVRQIFTSYTERYQTVGLDEAYLDVSH----YENAV 115 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++I++ I E LT S G++ LAKIASD+ KP+ +I P + L+ LP+ Sbjct: 116 PIARDIKRRIKRETGLTCSIGLSYNMSLAKIASDLKKPDAFVIIRPEQALDVLRPLPIGT 175 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVGK S L G+ T D + L FGKFGR L+ R++G D R++ +R Sbjct: 176 LHGVGKKSQELLAKKGIETVEDFWRLSLDEATTLFGKFGRSLYYRARGEDNREIEMDRAP 235 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS E T+ D+ I L E+E + + + +K+K+ DF Q T+ Sbjct: 236 KSSSRETTLPFDLFDRDAIAPIATSLLREVEEDIRE--EGVEPQTITLKIKYADFTQRTK 293 Query: 301 EH-VWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM---ERQLVL 349 +H N +L+ +D GVRLVG+ + Q QL + Sbjct: 294 QHKAVAGANWQELLDDLLDAFD---YTAGVRLVGVGFSNFAEQQGERYEQLSM 343 >UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA62_9FIRM Length = 413 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 109/359 (30%), Positives = 176/359 (49%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNP-------ALRDIPIAIGGSRERR-GVISTANYPARKFGV 53 R I H+D++ F + + N LR IP A+GG +R GV+ + A+K+GV Sbjct: 7 RIIFHIDVNSAFLSWQAAYNKKMGNKEVDLRSIPSAVGGDEAKRKGVVLAKSQKAKKYGV 66 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 R+ A K CP+L ++ F Y+ SN + ++ S Y+ IE S+DE +LD T S Sbjct: 67 RTGESLFEARKKCPNLLIVKPNFKIYRMYSNKLFDLLSEYSDTIERYSIDECFLDYTSSQ 126 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 G A EI++ I EL T + G++ K LAK+A D+ KP+ + P E+ + Sbjct: 127 KLFGEPIKAAYEIKERIKRELGFTVNIGISNNKLLAKMAGDLKKPDKVITLFPEEIEEKM 186 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDER 232 L + ++ VG+ + KL ++G++T GD+ KC + L+ F K G +L+ S GIDE Sbjct: 187 LPLTINELFMVGRKTKEKLNSLGIKTIGDLNKCSMGFLISNFKKAQGTMLYNYSHGIDES 246 Query: 233 DVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 +V R KS+G T+ D +E + + L + RL + DL V +K Sbjct: 247 EVEISRQTKSIGNSTTLKNDTTDINEVKKVFLALSDSVGTRLR--RKDLKGNTITVTIKN 304 Query: 293 DDFQQTTQEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + F + + P + + A K ++E +RL+G+ V L+ QL L Sbjct: 305 NLFHSYSHQRTLPYFTNSTNTIYEQAFKLFNEFWNNDAIRLLGISVGGLNKDEVNQLSL 363 >UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomycetales RepID=C7QBJ0_CATAD Length = 834 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 124/357 (34%), Positives = 182/357 (50%), Gaps = 24/357 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I HVD+D F+A+VE P+LR P+ +GG RGV+STA+Y AR FGV SA+ TG+A Sbjct: 12 IFHVDLDAFYASVEQLHKPSLRGKPVVVGG-IGNRGVVSTASYEARAFGVHSALATGIAR 70 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS----- 118 + P+ L RF AY+ S + + + +EPLSLDEA++D++ + Sbjct: 71 RRAPNAAYLIPRFGAYQAYSERVMALMHELSPLVEPLSLDEAFIDISHLFGSLDTTTPHN 130 Query: 119 ----ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 A IA+++R I NE LTAS G K +AKIASD KP+G VI P +L Sbjct: 131 ATLEARRIAEDLRTRIKNETGLTASVGAGTSKLIAKIASDAEKPDGLVVIEPGTEQTWLD 190 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERD 233 LP+ + GVG +A +L +G T D++ L L G +G L+ ++G D+RD Sbjct: 191 PLPVRALWGVGPATAERLRKIGATTVADLRTLSLTELTTVVGASYGTTLYAIARGQDDRD 250 Query: 234 VNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 V+++R KSV VE T AED+ + A ++ L L R+ K +K++ Sbjct: 251 VSTDREMKSVSVEDTYAEDLLDPATITAHMDDLVTRLSTRIRKAGRSGR--TITIKVRGH 308 Query: 294 DFQQTTQEHVWPRLNKADLIATARKTWDERRGG---------RGVRLVGLHVTLLDP 341 DF ++ P N D + T R G G+RL+G+ +T L Sbjct: 309 DFTTVSRSETTP--NPTDDLTTIRAATHRMLPGAVAAATQSVPGIRLLGVGLTGLAE 363 >UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0S0R3_FINM2 Length = 347 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 112/347 (32%), Positives = 191/347 (55%), Gaps = 8/347 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +H D+D FFA+ E+ DNP L+ +P+ +GG R +RG+I+TANY ARK+G+ SAMP A K Sbjct: 6 LHFDLDAFFASCEILDNPKLKHVPMVVGG-RSQRGIITTANYEARKYGLHSAMPIFQAKK 64 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQ 124 + P+L ++ F+ Y+ S + ++ S ++++I+ +S+DE +D++ H +A Sbjct: 65 IVPNLVIVAPDFEKYRRNSEKVFKVLSSFSNKIQKMSIDEGCMDIS---HIRMDRLELAN 121 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 I++ + + L+ S G++ LAK+ASD NKP+G +IT ++P L L + KI G+ Sbjct: 122 LIQENVRIKTGLSISIGISYNMSLAKLASDWNKPHGIKIITQDDIPNILLDLKVGKIQGI 181 Query: 185 GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVG 244 G+ S KL +G++ D+ L + FGKFG ++++R +GIDER ++ R+RKS+G Sbjct: 182 GRKSEEKLNKIGIKKVSDLYDLSRNNLRELFGKFGEVIYDRIRGIDERQLDLSRIRKSIG 241 Query: 245 VERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW 304 VE T D+ +++E EL L K ++ +K+K +DF T+ Sbjct: 242 VEYTFERDLKNYNELLNKASEFSEELSDDL--HKKNIKAKTIRIKIKLNDFSVITKSMTL 299 Query: 305 PRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + +D+ + + + VRL G+ L QL Sbjct: 300 EEYISDSSDIFRIVKYLVVNTKIEKSVRLFGITAANLSDTTFEQLKF 346 >UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus RepID=C7RGQ0_ANAPD Length = 345 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 188/351 (53%), Gaps = 10/351 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M I HVD D F+A+ E NP +++ P+A+GG + +++TANY AR+FG+ SAMP Sbjct: 1 MNYIFHVDCDAFYASCEELRNPKMKNHPLAVGGL-SNKSILTTANYKAREFGLHSAMPVF 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 +A +LCP+L LLP Y++ S + + Y +E +S+DEAYL V S Sbjct: 60 IAKELCPNLILLPVDHKYYRKKSKEVFSLVKEYAKLMEQVSVDEAYLLVET-----DSPK 114 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+++++ + + + S G++ KFLAK+ASD KP+G I ++ FL + + K Sbjct: 115 KLARKLQEEVLRKTGIGISIGISYNKFLAKLASDWQKPHGITQIRKEDLDYFLPNISVNK 174 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + G+GK ++ +L +G+ D+ K D L+ FGK G ++ +G+D+R +N R+R Sbjct: 175 VHGIGKKTSERLNKIGIYKVEDLLKLDYEYLIDNFGKQGAYIYHVIRGVDDRKINPSRVR 234 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G ERT A++ + + + ++ L +E + ++ +K+K F+ T+ Sbjct: 235 KSIGKERTFAQNTNDMAILTSYLKNLSELIEDEMDI--KNIQGKTVNLKIKDAKFKNHTR 292 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P D+ A ++ G +RL+G+ ++ L + QL Sbjct: 293 SITLQEPIYRAKDIYNEALSLLEDLHKGEMLRLIGISLSNLQERKLNQLSF 343 >UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacillus RepID=A8YTI5_LACH4 Length = 406 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 128/359 (35%), Positives = 190/359 (52%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGG---SRERRGVISTANYPARKFGVRSAMP 58 R+IIH+DMD F+A+VE + NP L++ + IG + GV++T NY ARK+GV SAMP Sbjct: 47 RRIIHLDMDAFYASVETQRNPELKNKALVIGQDPRNNGGHGVVATCNYVARKYGVHSAMP 106 Query: 59 TGMALKLCP--HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 A+KL P L + F Y+ S I T ++E ++LDEAYLDVT + Sbjct: 107 AIKAVKLIPKSELVFVRPDFKKYRSVSAKIHSFMHEITDKVESIALDEAYLDVTHNKLGQ 166 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 A +A +++ I EL L +S GV+ KFLAK+ S+ KP G+ VI P E FL Sbjct: 167 NLAVQVAIGLQRRIRTELGLNSSFGVSYNKFLAKMGSEYAKPFGRTVILPYEAKQFLGMQ 226 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV-- 234 + K PGVG + +L MG+ T D+QK +L+K+F K G L + + GID R V Sbjct: 227 KIEKFPGVGPKTQEQLHEMGIYTGADLQKVADFVLIKKFKKMGYFLAQHAHGIDLRPVIA 286 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +S+ RKS+G+ERT I+ E I LE L K + +K++ +D Sbjct: 287 DSDTNRKSIGMERTYEPAIYTRDEALTHIRHYCKHLEDELK--KRNFFAQTVVIKVRDND 344 Query: 295 FQQTTQEH--VWPRLNKADLIATARKTWDERRG--GRGVRLVGLHVTLLDPQMERQLVL 349 F T+ P ++ D +AR+ +D+ +G+RL+G+ VT + + L Sbjct: 345 FDTVTKRRKLTKPSNSQYDYYDSARELFDKTSNFLEKGIRLIGVTVTDFKKDEYQTINL 403 >UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella parvula ATCC 17745 RepID=D1YPB9_9FIRM Length = 510 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 113/329 (34%), Positives = 168/329 (51%), Gaps = 6/329 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA++E D+P + P+ +GG RGV++T +Y ARKFGV SAMP Sbjct: 3 RWIMHVDMDAFFASIEQLDHPEYKGHPVIVGGL-SSRGVVATCSYEARKFGVHSAMPISR 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP + R D YKE SN I I +T IEPLS+DEA+L+V+ + Sbjct: 62 AKKLCPDGIYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKA 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + I+ +F + L SAG+AP KFLAK+ASD++KP+G VI L LP+ +I Sbjct: 122 LGRAIKDRVFEQTGLIISAGLAPNKFLAKLASDLDKPDGLVVIPYGRERKVLAPLPIKRI 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCD-LVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG + L+A G +Q L+ G + +WE + GID+R V ++R Sbjct: 182 WGVGPRTEKILKAGGFHLMRHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVETDRKT 241 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 +S+G E T ED+ E + L +K+++DDF ++ Sbjct: 242 QSIGAEETYEEDLTEGRAIELEFRYFAN--RLSKRLRRRSLYGHTVSIKVRYDDFTTVSR 299 Query: 301 EHVWPRLNKAD--LIATARKTWDERRGGR 327 + + + TA W++ + Sbjct: 300 QKRLDTPSDHEHVFFETALLLWNKLMQDK 328 >UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBK8_9FIRM Length = 389 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 179/341 (52%), Gaps = 6/341 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D++ FFA+ E+ N AL P+ + G RR V+STA+Y AR +GV SAMP M Sbjct: 4 RVIFHIDLNSFFASAEVLKNSALEGQPVVVAGM-HRRSVVSTASYEARNYGVHSAMPLHM 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP L ++ G + Y+E S R++ +EP S+DE Y+DVT+++ + Sbjct: 63 ALEKCPQLVVVQGDYAWYEELSRRFFNYVKRFSPYLEPASIDECYIDVTEAIRAYKRPLD 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A I++ ++ +L+L S GV P KFLAK+ASDM KP G V+ E+ L L +A + Sbjct: 123 LAWRIQKGVYEDLRLPCSIGVGPSKFLAKMASDMRKPMGITVLRRQEIERKLWPLSIADM 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQK-CDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+GK + LE G+ T GD + ++ GK L + ++G ++ Sbjct: 183 FGIGKKTVPLLERQGIYTIGDFANPANEAKIMALMGKHAYQLIQNARGFGSNRLDYNTSV 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 +S+ T+ +I + E +++ +RL +L +R + DL A + +++ DF + Sbjct: 243 QSISQSTTLDTNIVEYEEVKSVFKRLANKLSQRAK--QEDLRGALISISIRYADFTNAVR 300 Query: 301 EHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLL 339 + L+ A +D+ G+ +R +G+ + L Sbjct: 301 STTISEYTNDADVLLEHALLLFDQHNNGKEIRHLGIGLGSL 341 >UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3I3_JONDD Length = 413 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 117/352 (33%), Positives = 171/352 (48%), Gaps = 8/352 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++HVDMD F+A+VE+ P LR P+ + G R V+ A+Y AR+ GVRSAMPT A Sbjct: 23 VMHVDMDAFYASVEIAQRPELRGQPVIVAGGE--RSVVLAASYEARELGVRSAMPTQRAR 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 L PH + R Y S + + T +E +S+DEAYLDV+ G+ + A Sbjct: 81 LLAPHAVWVAPRHHEYARISRSVMDYLDTITPWVEQVSIDEAYLDVSGIRGPQGTLSARA 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 QE+R + +T S GVA KFLAK+ S KP+G V+ + FL LP+ + G Sbjct: 141 QELRAQVKAHHGVTCSVGVAANKFLAKLCSTQAKPDGLLVLPRGQEQEFLNLLPIGALMG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 +G S +L+ GL T DV + ++ G G L ++GID+R V R+ KS Sbjct: 201 IGDKSERRLKQHGLHTIRDVAALEPSYVVALLGATLGNRLIHLARGIDDRPVTPTRVEKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 VG E T A+D A + L + RL LL VK++ +F T+ Sbjct: 261 VGAEHTFAQDEGSREVLRATVRSLADTVTSRLRS--RGLLARTISVKIRDVNFHTITRHV 318 Query: 303 VW--PRLNKADLIATARKTWD-ERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P + + + A D + G+ RL+G+ L P+ + L L L Sbjct: 319 TLHSPSQSLHVVFSQAWTLVDRQLLPGQRARLLGVRAEQLVPEEGQPLTLTL 370 >UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=Veillonella RepID=D1BPW6_VEIPT Length = 500 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 113/326 (34%), Positives = 167/326 (51%), Gaps = 6/326 (1%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +HVDMD FFA++E D+P + P+ +GG RGV++T +Y ARKFGV SAMP A K Sbjct: 1 MHVDMDAFFASIEQLDHPEYKGHPVIVGGL-SSRGVVATCSYEARKFGVHSAMPILRAKK 59 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQ 124 LCP + R D YKE SN I I +T IEPLS+DEA+L+V+ + + Q Sbjct: 60 LCPDGIYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKALGQ 119 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 I+ +F + L SAG+AP KFLAK+ASD++KP+G VI L LP+ +I GV Sbjct: 120 AIKDRVFEKTGLIISAGLAPNKFLAKLASDLDKPDGLVVIPYGREKEVLAPLPIKRIWGV 179 Query: 185 GKVSAAKLEAMGLRTCGDVQKCD-LVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 G + L+A G G +Q L+ G + +WE + GID+R V ++R +S+ Sbjct: 180 GPRTEKILKAGGFHLIGHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVETDRKIQSI 239 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G E T ED+ E + L +K+++DDF +++ Sbjct: 240 GAEETYEEDLTEGRAIELEFRYFAN--RLSKRLRRRSLYGHTVSIKVRYDDFTTVSRQKR 297 Query: 304 WPRLNKAD--LIATARKTWDERRGGR 327 + + TA W++ + Sbjct: 298 LDTPSDHEHVFFETALLLWNKLLQDK 323 >UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_STRCO Length = 479 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 123/355 (34%), Positives = 176/355 (49%), Gaps = 11/355 (3%) Query: 1 MRK---IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAM 57 MR I+H+DMD FFA+VE P+LR + +GG RGV++T +Y AR FGV SAM Sbjct: 1 MRTAPTILHLDMDAFFASVEQASKPSLRGKAVVVGGL-GPRGVVATCSYEARVFGVHSAM 59 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT--DSVHC 115 P G A +L PH L RF+ Y+ S + + + +EPLSLDEA++D+ + Sbjct: 60 PMGQARRLAPHAAYLVPRFELYRSISEQVMRLLRELSPLVEPLSLDEAFVDLDAGGAARD 119 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 +A L ++R I LT S G+A K LAKIAS+ KP+G +I P A L+ Sbjct: 120 AETARLAGTKLRTDIRTVTGLTGSVGLAASKMLAKIASEAAKPDGLVLIPPGTERAMLEP 179 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDV 234 + + +PGVG + L G+ T G++ + L++ GK G L+ + DER V Sbjct: 180 MTVRTLPGVGPATGDHLRRAGITTVGEIAEAGEDELVRLLGKAHGHALYAMALARDERPV 239 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +ER KSV VE T DIH + RL RRL L +K++ D Sbjct: 240 VAERETKSVSVEDTYDVDIHDRVRVGVEVGRLADRCVRRLR--ASGLSGRTIVLKVRRYD 297 Query: 295 FQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 F T+ P + A + A + D GVRL+G+ V+ L + L Sbjct: 298 FSTLTRSETLRGPTDDPAVVREAAARLLDSVDTTGGVRLLGVGVSGLADYTQEDL 352 >UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Coriobacteriaceae RepID=C7MN57_CRYCD Length = 454 Score = 342 bits (879), Expect = 8e-93, Method: Composition-based stats. Identities = 117/343 (34%), Positives = 179/343 (52%), Gaps = 6/343 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+ +D+D FFA+VE D+PA R P+ +GG+ E RGV+STA+Y AR +GV SAMP+ Sbjct: 27 RAIMLLDLDAFFASVEQLDHPAWRGKPVIVGGNPEARGVVSTASYEARTYGVHSAMPSST 86 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP+ PGRF Y+E S + I + +E +S+DEA+LD+T S Sbjct: 87 AKRLCPNAFWTPGRFSRYREISRQVMSIMEDESPALEQVSIDEAFLDITPSRAQTEHPAA 146 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I+Q + EL +T S G+ K +AK AS+ +KP G ++ P FL LP + Sbjct: 147 IAQRIQQRVC-ELGITCSIGLGRSKAVAKTASEAHKPRGLTIVPPGYEETFLAGLPTKAM 205 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + L G+ T G V + D V+L FGK ++ +R +G D+ V K Sbjct: 206 SGIGPAAQQALRKFGITTLGQVAQADDVILNHVFGKNASLMRDRCRGCDDSPVMHPAGAK 265 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV E + A D+ + EA + + ++ RR+ L+ + +KL+ DF + + Sbjct: 266 SVSNEMSFAVDLTSREDIEAALSTVAAKVGRRMRM--NGLVGSTLSLKLRRGDFSIHSAQ 323 Query: 302 HVW--PRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDP 341 P ++ + D G VRLVG +T ++ Sbjct: 324 CHLDIPCDDEYVITPILFDLLDRVWRPGDSVRLVGCALTHIEE 366 >UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM9_ERYRH Length = 392 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 183/351 (52%), Gaps = 7/351 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I H+D++ F+A+ + + +L P+ + +R V++TA+Y AR FGV SAMP A Sbjct: 4 VIFHIDINAFYASAHLITDSSLYGKPVVVCS-NQRGSVVTTASYEARSFGVNSAMPLAHA 62 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP+L ++ FD Y+E S I Y++ ++P S+DE Y+D+T+ + + + Sbjct: 63 KRLCPNLEVIEVDFDLYQELSVKFMNIIRSYSAVMQPASIDECYVDMTEVIKKYEKPLDL 122 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A EI++ I+ L+L S GVAP KFLAK+ASDM KP G V+ EV L L + + Sbjct: 123 AVEIQKNIWEALRLPISIGVAPNKFLAKMASDMQKPRGITVLRIREVSQKLWPLSIESMY 182 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 G+G+ + KL+ +G+ T GD+ + + L G + +++ G D ++++ KS Sbjct: 183 GIGQKTVPKLKQIGIETIGDLARFNPDHLKSILGVNAQNFVQKANGYDHSVIDTDVTMKS 242 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G +T + + E I E++RR+ + D++ ++ DD++ T+ Sbjct: 243 IGQSKTFKDAMTDLDEIRNAILNELVEVKRRME--RQDVVGKTVSFSIRLDDYKTATRSF 300 Query: 303 VWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVL 349 + + + +DE G GV + + +T L P+ E QL + Sbjct: 301 TFDEYTRDQNLVFERLMSLYDEFEGEGGVSFISVTMTNLLPKDEIIEQLNI 351 >UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIB1_KYTSD Length = 407 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 118/353 (33%), Positives = 179/353 (50%), Gaps = 10/353 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++HVDMD F+A+V + D P LR P+ +GG R V+ +A Y AR FGVRSAMP A Sbjct: 12 VLHVDMDAFYASVALVDRPELRGQPVIVGGG--HRSVVLSATYEARAFGVRSAMPMARAR 69 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP T++ + Y S + EIF + T ++P S+DEA+LDVT + GS +A Sbjct: 70 RLCPQATVVRPDHERYAAVSAAVMEIFRQVTHAVQPTSVDEAFLDVTGTSRRWGSPLQVA 129 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + IR+T+ E +T S G+ P F+AK+AS KP+G +TPAEV +FL L + + G Sbjct: 130 EWIRRTVAAEQHITCSVGIGPNPFVAKVASGQAKPDGTRQVTPAEVVSFLHPLDVGVLWG 189 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 VG+ + +L GL T V +V L + G G L ER+ G D + V K+ Sbjct: 190 VGEKTQEQLARFGLTTVAQVAHTPVVTLQRIVGDHAGAALAERAWGRDPQRVRPVVAEKT 249 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G +T DI + E + L + R ++ V ++F DF + Sbjct: 250 IGNGQTFDHDIDDPRQVETRLLLLSDRVAARARTA--GVMGRTVQVTVRFADFTTVQRSR 307 Query: 303 VWPRLNK--ADLIATARKTWDERRGGRG-VRLVGLHVTLLDPQME--RQLVLG 350 R + ++ AR+ + R VR+V + ++ L P RQ +L Sbjct: 308 TLQRPSDVSREIHQVAREVFASLGLQRARVRMVRVTLSGLTPTDRTPRQGMLD 360 >UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO42_BACSU Length = 412 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 109/360 (30%), Positives = 174/360 (48%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG-VISTANYPARKFGVRSAMPTG 60 + I VDM F+A+VE +NP L++ P+ + G E+RG V+ A A++ GV +A Sbjct: 5 KVIFLVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLW 64 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP +L R Y + S I I YT +EP S+DE ++D+T S G+ Sbjct: 65 EAQEKCPEAVVLRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTPM 124 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASD-MNK--PNGQFVITPAEVPAFLQTLP 177 IA+ I+ I E+ + A G+ P K LAKIA D K NG F +T + + LP Sbjct: 125 EIAKSIQGRIMREIGVYARVGIGPNKALAKIACDNFAKKNKNGIFTLTKENMKTEMWPLP 184 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + + GVG L MG+ T G + L +L K++G G +LW + GID V++ Sbjct: 185 VGSMFGVGSRMKHHLNRMGISTIGGLAAFPLDLLKKKWGINGHVLWMTANGIDYSPVSTS 244 Query: 238 RL--RKSVGVERTMAEDIHHWS-ECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 L +K++G T+ D H+ E + ++ L E+ RR ++ V + D Sbjct: 245 SLDGQKAIGHGMTLPRDYEHFDKEIKVVLLELSEEVCRRSRNA--GVMGQTVSVSCRGAD 302 Query: 295 FQQTT---QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F T ++ P + D+ R+ + G+ VR +G++++ L QL L Sbjct: 303 FDWPTGFNRQVKLAEPTNSTQDVYEAVRRLFLTFWDGKPVRRLGVNLSQLSSDDIWQLNL 362 >UniRef50_A9BNM1 DNA-directed DNA polymerase n=34 Tax=Betaproteobacteria RepID=A9BNM1_DELAS Length = 437 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 131/393 (33%), Positives = 192/393 (48%), Gaps = 49/393 (12%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE------------------------- 36 R+I H+DMD F+A+VE+ P L+ +P+ IGG R Sbjct: 28 RRIAHLDMDAFYASVELLRYPQLKGLPVVIGGGRRAHDEALDARYAGRLHEIPVDEFSRL 87 Query: 37 ----RRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSR 92 RGVI+TA YPAR+FGV SAM A +LCP LLP F + S +EI Sbjct: 88 KDYVGRGVITTATYPARQFGVGSAMGMMKAARLCPQAILLPVDFAEVRRFSRMFKEIIVS 147 Query: 93 YTSRIEPLSLDEAYLDVTDSVHCHGSA-TLIAQEIRQTIFNELQLTASAGVAPVKFLAKI 151 +E +DE Y+D TD ++A+ I++TI + LT S GVAP K LAK+ Sbjct: 148 IAPLMEDRGVDEVYIDFTDVPGGQREGGRVLARLIQKTITDATGLTCSIGVAPNKLLAKM 207 Query: 152 ASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVML 211 AS+ NKPNG ++ P ++ A + L KI G+G + AKL+++G++T G++ K L L Sbjct: 208 ASEFNKPNGISIVQPDDLQAVIWPLACRKINGIGPKADAKLQSLGIQTIGELAKQSLPQL 267 Query: 212 LKRFGK-FGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIH---HWSECEAIIERLY 267 ++ FG+ +G L S G DER V + S+ E T D+H +E AI L Sbjct: 268 VQWFGRAYGNWLHGVSWGRDERPVVTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLC 327 Query: 268 PELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV--WPRLNKADLIATARKTWDERRG 325 L + L + + G+KL++DDF+ T++H P + A L A + Sbjct: 328 ERLAQDLQ--RKGYMGRTVGIKLRYDDFKTATRDHTLELPMADAATLRRAAGQCLKRVPL 385 Query: 326 GRGVRLVGLHVTLL-----------DPQMERQL 347 + +RL+G+ V L DP QL Sbjct: 386 AKRLRLLGVRVGNLVRTADWEATAHDPLAREQL 418 >UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaproteobacteria RepID=B9JVH1_AGRVS Length = 428 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 120/342 (35%), Positives = 183/342 (53%), Gaps = 7/342 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 + H+D D F+A+VE RDNP L D P+ IGG +RGV+STA Y AR GVRSAMP A Sbjct: 44 TLAHIDCDAFYASVEKRDNPDLIDKPLIIGGG--KRGVVSTACYVARIHGVRSAMPMFKA 101 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L+ CP ++P + Y +R + T ++PLS+DEA+L++ + H + + Sbjct: 102 LEACPDAVVIPPNMEKYSRVGRQVRAMMEELTPLVQPLSIDEAFLELKGTEALHHAPPAL 161 Query: 123 A-QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + I +E+ +T S G++ KFLAK+ASD+ KP G V+ AE FL P+ I Sbjct: 162 VLARLARRIESEIGITVSVGLSYCKFLAKVASDLQKPRGFSVVGEAEALDFLAPRPVTTI 221 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGK A+ LE G+RT G +Q + L++R+G G+ L S+GID+RDV++ K Sbjct: 222 WGVGKAFASTLEKDGIRTIGQLQTMEESDLIRRYGSMGQRLARLSKGIDDRDVHTNDPAK 281 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV E T +DI + + +L ++ RL K +L +KLK DF+ T+ Sbjct: 282 SVSAETTFFDDISRREDLVPHLRKLSEKVAWRLK--KQELAGHTVILKLKSADFKLRTRN 339 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP 341 P + T + ++ G RL+G+ ++ Sbjct: 340 RRLDDPTQLADRIFRTGLQMLEKEADGTKFRLIGIGISDFAD 381 >UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_TREDE Length = 395 Score = 339 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 117/352 (33%), Positives = 181/352 (51%), Gaps = 7/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + HVD+D FFA+VE DNP P+ +GG + RGV+ST +Y ARKFGV SAMP Sbjct: 5 KVFFHVDIDAFFASVEQLDNPEYMGKPVIVGG-QSERGVVSTCSYEARKFGVHSAMPILQ 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP L GR D Y E S + IF +T I+ +S+DEA+L++T G+ Sbjct: 64 ARKLCPSGIFLRGRMDRYHEKSKEVMSIFKDFTPEIKQISVDEAFLNMTGMEKIFGTPKN 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A +++TI E LT S G A K++AKIAS +KP+G F++ E F+++LPL + Sbjct: 124 SALLLKKTIKEETGLTVSVGCAQNKYIAKIASGRSKPDGLFIVKAGEEIDFMKSLPLKDV 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLR 240 GVG + +L A GL + + +L G G L++ +G + + Sbjct: 184 WGVGGKTRERLIAAGLTSVPQIFNSSEHLLQSILGNASGSFLFQAVRGELYDVFSDDVKS 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 S+ ERT D+ +E + ++ L EL R+ K VK++++DF + Sbjct: 244 HSISTERTFEHDLFSHAEIDDVMFYLASELMYRIFDEKVKG--KTVSVKIRYNDFTTVSV 301 Query: 301 EHVWPRLNKA-DLIATARKTWDERRGGR-GVRLVGLHVTLLDPQ-MERQLVL 349 + +N DL AR+ + ++ + +RL+GL + ++ E Q L Sbjct: 302 QSTGAVVNDTQDLFERARELFYKKFDNKTPIRLLGLCIMNIESDIPEAQTEL 353 >UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PEH3_9FIRM Length = 415 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 108/355 (30%), Positives = 171/355 (48%), Gaps = 9/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+HVD D F+A+VE NPALR P+A+ G E R G++ + A+ FGV++ Sbjct: 6 RTILHVDCDAFYASVECLYNPALRGRPVAVVGDPELRHGIVLAKSQEAKLFGVQTGDALW 65 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + C +T +P F+ Y S +EIFS Y+ R E LDE+++D+T G Sbjct: 66 QARQKCKEITFVPAHFEKYLSFSRMTKEIFSEYSDRCESFGLDESWIDLTGCTELFGDGP 125 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A +IR+ I EL +TAS GV+ K AK+ SD+NKP+G VI + LP+ Sbjct: 126 AVATQIRRRIKEELGITASVGVSFNKVFAKLGSDLNKPDGMTVIAYDGFKEQVWPLPVKT 185 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN---SE 237 + VG+ + KL++ G+ T G + + + L RFGK GR+LW + G+D V+ ++ Sbjct: 186 LLYVGRATTGKLKSYGITTIGALAQAPITFLEHRFGKIGRMLWMFANGLDTSPVSNIGAK 245 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 L KS+G T D+ E + + L + RL + + ++ Sbjct: 246 SLIKSIGNSTTAPRDLITDQEIKITLYALCESISARLRE--HSFRCKTVALTIRDSSLTS 303 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVL 349 ++ P +L A + + G VR +G+ L QL + Sbjct: 304 FERQLALKRPSCITQELFDAAFSLYKQHHKCGLPVRSLGVRAANLMLIDCMQLSI 358 >UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteria RepID=DPO41_AGRT5 Length = 405 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 120/342 (35%), Positives = 180/342 (52%), Gaps = 7/342 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I H+D D F+A+VE RDNP L D P+ +GG +RGV+STA Y AR GVRSAMP AL Sbjct: 23 IAHIDCDAFYASVEKRDNPELADKPVIVGGG--KRGVVSTACYIARIHGVRSAMPMFKAL 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA-TLI 122 + CP ++ + Y IR + T ++PLS+DEA+LD++ + H + Sbjct: 81 EACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 + + E+ ++ SAG++ KFLAK+ASD+ KP G V+ AE +FL P+ I Sbjct: 141 LAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVVGEAEALSFLAARPVTTIW 200 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVGK AA LEA G+R +Q+ + L++R+G G+ L+ ++GIDER V++ KS Sbjct: 201 GVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNNDPVKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 V E T DI + I+ L ++ RL K + +K+K DF+ T+ Sbjct: 261 VSSETTFFHDISRHEDLVPILRSLSEKVAWRLK--KSGIAGQTVVLKMKTADFKSRTRNR 318 Query: 303 VW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQ 342 P + T ++ G RL+G+ V+ L Sbjct: 319 RLDDPTQLADRIFRTGLALLEKETDGTKFRLIGIGVSDLRDA 360 >UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXH9_9BACL Length = 402 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 180/354 (50%), Gaps = 10/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 + I H+DM+CF+A+VE + NP L+ P+AI G + R G+I T+NY AR+ G+++ M G Sbjct: 3 KVIAHIDMNCFYASVEEKYNPELKGKPLAIAGEVKTRHGIIVTSNYEARELGIKTTMRVG 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A K+ P++ +L Y++ S I ++ YT +IE +S+DEAY+D++D Sbjct: 63 DARKIYPNIKILRPDMPKYQQESKLIFDLVREYTDKIEIVSVDEAYIDLSD----FSEPI 118 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 + I++ I+ +L + +S GV+ KF AK+ S++ KP G +I L L + + Sbjct: 119 KVIATIQRRIYKQLGMPSSVGVSFNKFFAKMGSNLKKPLGFSIINKKNYKDILWNLDIGE 178 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + G G S KL+ +G+ T GD+ + V+L G G L ++ G ++ R Sbjct: 179 MHGCGNASTKKLKKIGINTIGDIAVANEVILHSLLGVQGLRLKNKANGEGNSELKYTVDR 238 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G +T D+ + I++L ++ R+ + + ++F DF+ T+ Sbjct: 239 KSIGNSKTFTNDLIDEDDILKEIKKLSEKVSSRVKS--RSYVGNNISIMVRFSDFKTITR 296 Query: 301 EHVWPR--LNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVLGL 351 P + D+ A + E +G+RL+G+ + + ++ L + Sbjct: 297 SKKIPEFICDTNDIFNYAWELLLEHYDFTKGIRLLGVSLNEIKKVKGLKVQLDI 350 >UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidetes RepID=C6W6Q9_DYAFD Length = 416 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 171/340 (50%), Gaps = 6/340 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H D+D FF +VE + + L++ PI +GG+ + RGV++ +Y R+FGV S MP M Sbjct: 10 RAILHFDLDTFFVSVERKQDSRLQNKPILVGGTGD-RGVVAACSYETRQFGVHSGMPMKM 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCP T++ G + Y + S + EI S++ E S+DE Y D++ Sbjct: 69 ARMLCPEATVIRGNGETYSKHSKEVSEIISQHVPVFEKASIDEFYADLSGMDKYFNC-YG 127 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A ++RQ I E L S G+A K ++K+A+ KPN Q + P FL + + KI Sbjct: 128 MASDLRQRIIRETGLPISFGLATNKLVSKVATGEAKPNNQLRVEPGAEKTFLAPMEVQKI 187 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 P VG L +G+R +Q+ + M+ K FGK G LW R+ G+D + RK Sbjct: 188 PMVGDKMNQTLNNLGIRYVKTIQEMPMEMMGKVFGKNGVALWNRANGLDNSPIVPFHERK 247 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ERT +D + ++ + L +L D L + VK+++ DF +++ Sbjct: 248 SISSERTFGKDTGDVRKMREMVRAMAETLAFQLRT--GDKLTSCVSVKIRYSDFNTFSKQ 305 Query: 302 HVWPRLNKAD-LIATARKTWDERRGGR-GVRLVGLHVTLL 339 + LI + +D+ R VRLVG+ + L Sbjct: 306 LKIAYTSADHVLIPHIERLFDQLYNRRMMVRLVGVSFSDL 345 >UniRef50_B1MZW7 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Leuconostoc RepID=B1MZW7_LEUCK Length = 361 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 130/357 (36%), Positives = 193/357 (54%), Gaps = 14/357 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAM 57 +RKI+HVD+D F+A VEMRDNP LR+ P+ I RGV++TANY AR GV SAM Sbjct: 10 LRKILHVDIDAFYAQVEMRDNPELRNRPLIISRDPAETGGRGVVATANYVARALGVHSAM 69 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 A +L P L F Y++ S I IF +T +IEP++LDEAYLD+TDS H Sbjct: 70 SAVEARQLAPEGVFLSPNFKKYRQVSKTIHHIFHTFTEKIEPVALDEAYLDMTDS---HL 126 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 S IA +IR I E LT+S G++ K LAK+ S+ NKPNG VIT + +FL LP Sbjct: 127 SGASIAAQIRHQILKETGLTSSIGISHNKLLAKLGSEFNKPNGVTVITHDNMLSFLAELP 186 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + GVG + AK A+ + +++ L FGK G L+ +++G+ +V + Sbjct: 187 IGDFRGVGAKTKAKFSALKVENGLQLRQLPKETLRGLFGKMGENLYWQTRGVHFGEVQWQ 246 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GVKLKFDDFQ 296 R ++SVG E T IH+ + ++L E+ +A +K L R +K++ D F Sbjct: 247 RQQQSVGKEATFRYFIHNEIDVHKAFKQLANEM---IAALKVKQLTGRTLNIKIRDDAFN 303 Query: 297 QTTQEHVWPR---LNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVL 349 T+ L++ + TA+ ++E + VRL+GL ++ L ++ L Sbjct: 304 TITRAITRETPWPLSETLITQTAQSVFEEVIQTPFSVRLLGLSISNLQSSTFEEMTL 360 >UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT23_PEDHD Length = 385 Score = 336 bits (863), Expect = 7e-91, Method: Composition-based stats. Identities = 113/350 (32%), Positives = 187/350 (53%), Gaps = 7/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + IIH+D+D FF +VE++ N L P+ +GG + RGV+++ +Y ARK+GV SAMP+ + Sbjct: 5 KHIIHMDLDSFFVSVEIKKNSKLAGKPVIVGGLSD-RGVVTSCSYEARKYGVHSAMPSRL 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH + G D Y E S + EI + +E S+DE Y+D+T +G Sbjct: 64 ARQLCPHAEFVRGNMDDYSEHSRMVTEILQQKVPVLEKASIDEHYIDMTGMERFYGC-MK 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A+E+++ +F E L S G++ K ++KIA++ KPNG + E+P+FL L + KI Sbjct: 123 FARELKEQVFKESGLPVSFGLSVNKTVSKIATNECKPNGALQVEQLEIPSFLNPLSIKKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+G + KL MG+R + + K G G LW+++ GID V R +K Sbjct: 183 PGLGAATFLKLSEMGVRKIHTFAQIPQQQVYKVLGNNGLSLWQKAHGIDHTPVIPYREQK 242 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ++T D +++ +I + EL L K + L A + +++ +F+ TQ+ Sbjct: 243 SISKQQTFESDSIDFTQIRQLITGMVIELAYELRKQQK--LTACVTIVIRYSNFETITQQ 300 Query: 302 HVWPRLN-KADLIATARKTWDERRGGRG-VRLVGLHVTLLDPQMERQLVL 349 P LI A++ ++ R +RLVG+ ++ L Q+ L Sbjct: 301 CRIPYTALDDTLIVKAKELFERAYTRRMLIRLVGIKLSALV-NGYEQIDL 349 >UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX0_BREBN Length = 413 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 108/359 (30%), Positives = 166/359 (46%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R + +DM F+A++E NP LR+ PI + G ERR GV+ A A+ +GV +A Sbjct: 7 RIVFLIDMQSFYASIEKGANPELRNKPIVVAGDPERRSGVVLAACPIAKSYGVVAAEALW 66 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + C L ++ R + Y S I IF +T ++EP S+DE +LDVT SVH G Sbjct: 67 QAQQKCRQLVVVRPRMEMYIRISMQITRIFEAFTDKVEPYSIDEQFLDVTGSVHLFGDPL 126 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASD-MNKPN--GQFVITPAEVPAFLQTLP 177 +A +IRQ ++ E + G+ K LAK+A D K G F + + L LP Sbjct: 127 QMAAQIRQRVWMETGINCRVGIGENKVLAKMACDNFAKKREEGVFWLKRETLADTLWKLP 186 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV--N 235 + K+ GVG MG+ G + +L + +G G +LW + GID+ V + Sbjct: 187 IEKLFGVGSRMKRHFHRMGVYQIGQLADMRPAILTRHWGVNGEVLWRTAHGIDDSPVALD 246 Query: 236 SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 S +K +G T+ D H SE + ++ L E+ RR K +L+ + V + D Sbjct: 247 SYDSQKGIGHHMTLPRDYHTASEIKVVLLELCEEVCRRAR--KKELMGSVLSVGCRGADL 304 Query: 296 QQTT-----QEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T + + L A +D VR +G+++ L P QL L Sbjct: 305 AAGTGFGRQMKLTEQTNDAMTLYEAACFLFDRHWQETPVRSIGVNLGQLVPDNVVQLNL 363 >UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2KZY4_9FIRM Length = 418 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 184/353 (52%), Gaps = 9/353 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD F+A+VEMRDNP L+D P+ IG RGV++T NY ARK+GVRSAM + A Sbjct: 14 IILHVDMDAFYASVEMRDNPTLKDKPLIIGAKPTERGVVATCNYEARKYGVRSAMNSKEA 73 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP L F+ YK S + EI YT ++E ++LDE YLD+T+ A I Sbjct: 74 FRLCPKAVFLYPDFEKYKAVSEELHEILESYTKQVEYIALDEGYLDLTEVAKDFSEAEKI 133 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVPAFLQTLPLAKI 181 +EI++ + EL+LT S G+A K AK AS+ KPNG F+I + L+ + + Sbjct: 134 GREIQRRVAEELRLTCSVGIAYGKTAAKTASEEKKPNGFFMIQRREDYVELLRDRDVRAL 193 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR- 240 VG +A +L + G+ T D+Q+ + +L + G G++L E S GID R V R Sbjct: 194 FTVGAKTAERLYSFGIYTVKDLQEKEKEVL-RLLGNQGKMLLELSYGIDHRKVVPYRPED 252 Query: 241 -KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 +S+ E T ED+ +S + ++ L +E R + L +K+ F D + T Sbjct: 253 TQSISKEMTFQEDVTDYSFLDDVLFLLSFRVENRAK--RYGLYARGVSLKITFADMKTIT 310 Query: 300 QEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 + + ++ L A + R VRL+G L+ RQL Sbjct: 311 RSALISESTQSAFSLYKNASALLQQI-PRRRVRLIGEGFYHLEENEGRQLSFS 362 >UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA41_MICLC Length = 431 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 114/347 (32%), Positives = 169/347 (48%), Gaps = 7/347 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD FF +VE+R+ P L P A+ + R V+ +A+Y AR +GVRSAMP A Sbjct: 14 TILHVDMDAFFLSVELREQPDLEGRPAAVA-APSGRSVVLSASYAARAYGVRSAMPLAHA 72 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 LCP L ++P R Y+ S + + + T +E LS+DEA+LDV + G I Sbjct: 73 RALCPPLVVIPPRQQLYRAVSAEVMAVLADVTPVMEQLSVDEAFLDVAGARRRLGPPEHI 132 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 IR+ + + L L + G + VKF+AK AS KP+G ++ P FL LP+ ++ Sbjct: 133 GHLIRERVRSALGLPCTVGGSAVKFVAKTASTAAKPDGLLIVPPQRTLDFLHPLPVGRLW 192 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVG +A +L G+ T GD+ + D L FG GR ++GID R V +S Sbjct: 193 GVGPKAAERLARRGVATIGDLARVDPARLEASFGAAGREWASLARGIDPRPVAPRPAARS 252 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G + T D + + RL + RL + V+LK D ++ Sbjct: 253 IGADHTFDVDPVDVVGVDPEVLRLCHRVAARLR--AEQVTAGAVTVRLKAPDGSVRSRTA 310 Query: 303 VW--PRLNKADLIATARKTWDERRGGR--GVRLVGLHVTLLDPQMER 345 P DL+ AR+ E R VRLVG+ L + ++ Sbjct: 311 RLARPTATGHDLLGPARRLVRELHAERPHPVRLVGVRAERLGDEADQ 357 >UniRef50_B3WC63 DNA-damage-inducible protein P n=8 Tax=Lactobacillus RepID=B3WC63_LACCB Length = 367 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 124/358 (34%), Positives = 184/358 (51%), Gaps = 12/358 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMP 58 RKIIH+DMD F+A++EMRDNP LR + I +GV++TANY AR++GV SAMP Sbjct: 14 RKIIHLDMDAFYASIEMRDNPQLRSKALVIARDPRTTGGKGVVTTANYVARRYGVHSAMP 73 Query: 59 TGMALKLCP--HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 AL+L P L F YK S I +F + T IEP++ DEAYLDVT + Sbjct: 74 ANEALQLVPRSKLVFKSPDFPKYKAVSAQIHALFHQVTDLIEPVAFDEAYLDVTAN-KMF 132 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 S +A ++ I QLT+S G++ KF+AK ASD NKP G+ ++ P + FL L Sbjct: 133 PSTIALALWLQDQISQATQLTSSIGISYNKFIAKQASDYNKPVGRTLVLPEQALLFLDRL 192 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P+ + GVGK + KL +G+ ++ LL+ FGK G +L++ ++G+D R V + Sbjct: 193 PIKQFRGVGKKTLPKLTDLGVTDGKSLRALSQDDLLRMFGKMGFVLYQHARGVDNRPV-A 251 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R KS+G ERT + + + L + L + +K++ DF Sbjct: 252 VRTAKSIGKERTYGTPLTDAEAVQTQLHNLAGMVVTSLNQKAMHG--KTVVLKVRDVDFI 309 Query: 297 QTTQEHVWPRLNKAD--LIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVLGL 351 T+ + + + A + W +RL+G+ VT LDP+ L L L Sbjct: 310 TQTKRLTQDHYFEGEQAIFDAAWQLWGSVAMSNLAIRLLGITVTGLDPKQYENLDLPL 367 >UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM Length = 415 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 109/359 (30%), Positives = 168/359 (46%), Gaps = 14/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNP------ALRDIPIAIGGSRE-RRGVISTANYPARKFGVR 54 + HVD++ F + LR +P A+GG E R GV+ + PA+KFGVR Sbjct: 3 KVYFHVDVNSAFLSWSALKKLRAGETLDLRTVPSAVGGDEEKRHGVVLAKSSPAKKFGVR 62 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + A CP L + P FD Y + S + I YT +E S+DEA+LD+T + Sbjct: 63 TGESLFSARLKCPELIVTPPDFDFYVQNSKALIAILRDYTPDVEQYSIDEAFLDMTGTEA 122 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 G +A IR + EL T + GVA + LAK+ASD KP+ + P EVP + Sbjct: 123 LFGPPLTVAHTIRNRVREELGFTVNIGVASNRLLAKMASDFEKPDKVHTLFPEEVPDKMW 182 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP+ + GVG + +L G+ T GD+ + + +++ FG G LW + G + V Sbjct: 183 PLPVGSLFGVGPSAVKRLNQCGIYTIGDLARTERRVIVGIFGTRGDTLWNYANGREADPV 242 Query: 235 NSERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR-QGVKLKF 292 + R + G T+ +D+ + +A + L + RRL + D AR V+L Sbjct: 243 TKQTTRDNTYGNSVTLPQDLTRPEQADATLLALCDSVGRRL---RTDGKTARVVTVQLVD 299 Query: 293 DDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + F++T+ + P + L A + + GR VRLVG+ QL L Sbjct: 300 NAFRRTSHQRTLPDPTNSTDRLYEVALQLMRQMWPGRPVRLVGVSAEKTGTDNFEQLDL 358 >UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D1Q6_9CLOT Length = 435 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 110/360 (30%), Positives = 178/360 (49%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVE----MRDNP---ALRDIPIAIGGS-RERRGVISTANYPARKFGV 53 R I H+D++ F + E + +P LR IP A+GG + R G++ + A+++GV Sbjct: 21 RLIFHIDVNSAFLSWESVYRLSADPQALDLRTIPSAVGGDAKSRHGIVLAKSTLAKQYGV 80 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 + P AL+ CP LT++P RFD Y + S+ + E+ YT E S+DE +LD+T ++ Sbjct: 81 TTGEPLAQALRKCPQLTVVPSRFDYYIKCSHRMMELLETYTPDHEKFSIDEIFLDMTQTI 140 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 H G A IR+ I +EL T + GVAP K LAK+ASD KP+ + E+P+ L Sbjct: 141 HLFGQPLEAANRIRERIRDELGFTVNIGVAPNKLLAKMASDFEKPDKCHTLFAHEIPSKL 200 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ ++ VG + K+E +G+ T G + CDL +L G K+ + + G+D Sbjct: 201 WPLPIRELFFVGGAAQRKMENLGIHTIGQLASCDLAVLKAHLGEKYAVTIRGYANGVDVD 260 Query: 233 DV-NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 V + + K G T++ D+ + +I L + RL + +L V+LK Sbjct: 261 PVAEKDPINKCYGNSVTLSRDVSDYETACQVILSLCETVGARLRADR--VLCRNVCVELK 318 Query: 292 FDDFQQTTQEHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 +F + + + P + L A + E VRL+G+ +D QL L Sbjct: 319 DWEFHTQSHQMILPEPTDSTSALYGYACRLLREFWDRTPVRLIGVRAGKIDDDSFSQLSL 378 >UniRef50_B9X9L4 DNA-directed DNA polymerase n=3 Tax=Verrucomicrobia RepID=B9X9L4_9BACT Length = 368 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 121/335 (36%), Positives = 175/335 (52%), Gaps = 12/335 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I H+DMD F+A+VE RDNP LR P+ +G +RGV+ A+Y ARKFGVRSAMP+ +A Sbjct: 4 VIFHLDMDAFYASVEQRDNPELRGKPLIVGAPPTQRGVVCAASYEARKFGVRSAMPSVVA 63 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV------TDSVHCH 116 +LCP + R D Y+ SN I +I + + IE +S+DEAYLD+ +D Sbjct: 64 KRLCPDGFFIRPRMDHYRAESNQIMQIVAASGAIIEQVSIDEAYLDLSPVCQRSDLDSSL 123 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 SA +A +++ IF+E LT S G+A K LAKIASD NKPNG +I + FL+ + Sbjct: 124 LSAVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASDFNKPNGLTLIPERDKVLFLRPM 183 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P+ IPGVG+V+ L+ G+ T GD+Q L G FG L S G D R +++ Sbjct: 184 PIRAIPGVGRVTEEMLKKSGVETIGDLQDFP-GDLRSMVGSFGPTLKRFSFGEDNRQLDT 242 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 + KS+ E T +D + + E+ +L + + VKL++ DF Sbjct: 243 GDVIKSISSENTFLKDTEDRKILKTCLREQAEEIAAKLK--RKQIGAQTIQVKLRYSDFT 300 Query: 297 QTTQEHVW--PRLNKADLIATARKTW-DERRGGRG 328 T++ P AD+ E+ R Sbjct: 301 TLTRQLSVEEPITEAADIYRLGCYLLAREKLVSRP 335 >UniRef50_A7REV5 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7REV5_NEMVE Length = 870 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 115/393 (29%), Positives = 173/393 (44%), Gaps = 54/393 (13%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--------------------- 40 R I+H+DMDCFF +V +RD+P L P+A+ G Sbjct: 284 RVIMHIDMDCFFVSVYVRDHPELDGKPVAVSRFNGGGGCELKSSHIVNYEMSFPTGFVAD 343 Query: 41 ----------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASN 84 I++ +Y AR+ GVR+ M G A KLCP +T +P FD Y++ S Sbjct: 344 LTSPDKSSAFFNSMSEIASCSYAARECGVRNGMFLGQARKLCPDITCVPYLFDKYRQVSQ 403 Query: 85 HIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAP 144 + EI Y+ IE +S DEA+LDVT S+ +AQ+IR I + ASAG++ Sbjct: 404 RLYEILVSYSHDIEAVSCDEAFLDVTHSLDAGTEPMALAQQIRAEIRAATRCNASAGISS 463 Query: 145 VKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV 203 LA++ + + KP+GQF ++ +V F+ + +PGVG + KL MG+ TC D+ Sbjct: 464 NVLLARMCTRIAKPDGQFYLSREDDVIQFMASQKAKDLPGVGWALSKKLNDMGVETCADL 523 Query: 204 QKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAI 262 QK L L K FG K G L +G+D+R + ER RKSV E E Sbjct: 524 QKLSLQALQKEFGPKTGLSLHRSCRGVDDRPLRVERERKSVSAEINYGIRFTQDYEGVKF 583 Query: 263 IERLYPELERRLAKVKPDLLIARQGVKLK------FDDF------QQTTQEHVW--PRLN 308 IE L E+ +RL +V +K++ F ++ P + Sbjct: 584 IEELAGEVHKRLREVGLKGRCITLKLKVRQEGAPMPRKFMGHGICDNVSRSATLVEPTDD 643 Query: 309 KADLIATARKTWDERR-GGRGVRLVGLHVTLLD 340 + + R +G+ V+ L Sbjct: 644 NSVIARECLNLLKTLNIPAHDFRGLGIQVSKLT 676 >UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAW2_HELMI Length = 409 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 170/356 (47%), Gaps = 11/356 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTGM 61 ++ DM+ F+A+VEM NP LR P+ + G ERR G+I A+ A++ GV++AM G Sbjct: 6 TVLLADMNSFYASVEMAHNPTLRGQPVLVCGDPERRHGIILAASREAKRRGVKTAMTVGE 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +CP + R Y E S I++I + +EP S+DE ++DV + H G A Sbjct: 66 ARAICPDAVCVRPRMSLYLEVSWQIQQIARTLSPLVEPYSVDELFIDVRGAEHIWGDAVE 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNK---PNGQFVITPAEVPAFLQTLPL 178 A RQ ++ +++ S GV P KFL+K+A D+ P+G + +V A L LP+ Sbjct: 126 AAGIFRQRVWEAVKVPCSVGVGPNKFLSKMACDVEAKKSPSGVALWRVDDVEAKLHPLPI 185 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 K+ VG MGL T GD+ + L++RFG G + + G D V + Sbjct: 186 GKMFMVGSRMERHFRNMGLLTIGDLAHYPVDYLMRRFGLRGAVYHNLAWGRDGSPVRPDS 245 Query: 239 LR--KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 L KSVG T+ D HH + E ++ L E+ RR K+ V L+ D Sbjct: 246 LEQTKSVGHSVTLPRDYHHSDDIELVLLELTDEVCRRARKLGKAGR--TVSVGLRAYDLT 303 Query: 297 Q-TTQEHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + ++ P + + A+ + GR VR V + ++ L+ Q L Sbjct: 304 RGFYRQTTLPSPSNLSGPVFEKAQLLFRRHWDGRPVRTVTVDLSGLEEDGTLQQEL 359 >UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobacterium hafniense RepID=B8G1R4_DESHD Length = 423 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 110/362 (30%), Positives = 177/362 (48%), Gaps = 18/362 (4%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTGM 61 I+ D + ++A+ NP L+ P+ + G R G+I TA+Y AR +GV++AMP Sbjct: 15 DIVLFDANSYYASCHQAVNPELQGKPLLVAGDPRNRTGIILTASYEARFYGVKTAMPLFQ 74 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSR--IEPLSLDEAYLDVTDSVHCHGSA 119 ALKLCP +L F Y + S + EI RYT IE +S+DE + D S GS Sbjct: 75 ALKLCPEAVVLSPDFRLYLDLSRKMWEIVERYTDEDHIEVVSVDECFADFRGSHLLFGST 134 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNK--------PNGQFVITPAEVPA 171 IA+ +++ I EL L S GV+ K AK+ASD + P VI P E+ + Sbjct: 135 EEIARRVQKEILEELGLGVSVGVSYCKIFAKLASDYQRDPKTRVKLPRSFTVIAPGELES 194 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDE 231 + L + ++ G+G+ + +L +G+RT GD+ + L K FG +G L+ + G DE Sbjct: 195 KVWPLGVGELSGIGRQTEKQLADLGIRTIGDLAQASPQALRKGFGVYGAKLYAWANGRDE 254 Query: 232 RDVNSERLRK--SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVK 289 R V E K S+G T+ +DI + ++ L + R++ + + V+ Sbjct: 255 RPVTPEDQAKDHSIGRSITLPQDITDPEQGTEVLLFLADSVGRKVR--REETKAQTLTVQ 312 Query: 290 LKFDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 +K +F+ T P + + + K + G+ +RL+GL + L +E QL Sbjct: 313 VKDAEFKTRTYSTTLFEPTDSTDVIYRESLKLLAKWPQGKPIRLLGLTASRLQKGIE-QL 371 Query: 348 VL 349 L Sbjct: 372 SL 373 >UniRef50_B9HS71 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS71_POPTR Length = 1191 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 113/365 (30%), Positives = 180/365 (49%), Gaps = 20/365 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTG 60 IIHVDMDCFF +V +R++P L D P+A+ S +G IS+ANYPAR +GV++ + Sbjct: 440 TIIHVDMDCFFVSVVIRNHPELHDKPVAVCHSDNPKGTAEISSANYPARNYGVKAGIFVR 499 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP L + P F AY+E ++ + I ++ +++ +S DEA+LD+T+ G Sbjct: 500 DAKALCPQLVIFPYNFKAYEEVADQLYNILHKHCHKVQAISCDEAFLDITE--KDMGDPE 557 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A IR+ IF+ TASAG+A +A++A+ KPNGQ I V +L LP+ Sbjct: 558 LLASTIRKEIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCYIPSVSVDEYLHKLPIKA 617 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239 +PG+G V KL+ + TCG ++ L K FG K G +LW S+G+D R V + + Sbjct: 618 LPGIGHVLEEKLKKQNVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRLVGNIQE 677 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF---- 295 K++G E + + + L E+ RL + +K + D Sbjct: 678 SKTIGAEVNWGVRFKDLQDSQCFLLNLCKEVSFRLQGCRVQGRTFTLKIKKRRKDAGEPA 737 Query: 296 --------QQTTQEHVWPRL--NKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQME 344 + + P + L ++ + + +R VGL V+ L+ Sbjct: 738 KYMGCGDCENLSHSMTVPIAIDDVEALQRITKQLFGSFCLDVKDIRGVGLQVSKLENADP 797 Query: 345 RQLVL 349 + VL Sbjct: 798 SKQVL 802 >UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHB3_CORU7 Length = 477 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 166/350 (47%), Gaps = 9/350 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MR + H+DMD F+A+VE P LRD P+ +GG RGV++ A+Y AR +G RSAMP Sbjct: 1 MRWVAHIDMDAFYASVEQLTRPTLRDRPVLVGGM-SGRGVVAGASYEARAYGARSAMPMH 59 Query: 61 MALKLCPH-LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A++LC + ++ R YK S I ++ + + +E LS+DE + + V +A Sbjct: 60 QAIRLCRNRAIVIQPRSVLYKMISRRIFQVIAEHAGVVEQLSVDEGFAEPQGLVDA-AAA 118 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A+++++ + +L S G+A K AK+ASD+ KP+G FV+ + A P+ Sbjct: 119 RRWAEDLQRAVEEATELPCSIGMASTKLDAKMASDLAKPHGIFVV--EDRMATFGPRPVG 176 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 + G+G+V+ AKL +G+ T D + GK G + + G D R V Sbjct: 177 DLWGIGRVAQAKLADIGVHTIQQFVDMDPTDVKSLLGKVGLEVQVMAGGDDPRPVAPRAE 236 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 K + E+T+ D + + I+E + RRL K VK++ DF T Sbjct: 237 AKQISAEQTLPVDARTYRDVLNIMELSARQAYRRLRKDGR--AARTITVKIRTSDFALHT 294 Query: 300 QEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 + P L+ AR VRLVG+ + L + L Sbjct: 295 RSTTLPAPTDDFEQLLRAARAVLPRPEDSGAVRLVGVGFSGLSHDRQEML 344 >UniRef50_UPI0001982DE6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001982DE6 Length = 1137 Score = 332 bits (853), Expect = 8e-90, Method: Composition-based stats. Identities = 114/363 (31%), Positives = 180/363 (49%), Gaps = 21/363 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTG 60 IIH+DMDCFF +V +R+NP L+D P+A+ S +G IS+ANYPAR +GV++ + Sbjct: 396 VIIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVR 455 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCPHL + P F+AY+E ++ I ++ ++++ +S DEA+L+V DS G Sbjct: 456 DAKALCPHLVIFPYNFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEVMDSKE--GDPE 513 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A IR+ IF TASAG+A +A++A+ KPNGQ I +V +L LP+ Sbjct: 514 LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKA 573 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239 +PG+G V KL + TCG ++ L + FG K G +LW +G+D R V + Sbjct: 574 LPGIGHVLEEKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQE 633 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF---- 295 KS+G E + + + L E+ RL +K + D Sbjct: 634 SKSIGAEVNWGVRFNDLKDSRHFLVNLCKEVTLRLKGCGVQGRTFTLKMKKRRKDAGEPA 693 Query: 296 --------QQTTQEHVWP-RLNKADLIA-TARKTW-DERRGGRGVRLVGLHVTLLD-PQM 343 + + P + D+I A + + + +R +GL V+ L+ Sbjct: 694 KYMGCGDCENLSHSMTVPLATDDVDVIQRIATQLFGFFHIDVKDIRGIGLQVSRLENADT 753 Query: 344 ERQ 346 +Q Sbjct: 754 AKQ 756 >UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DPO4_CLOTH Length = 399 Score = 332 bits (853), Expect = 9e-90, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 175/356 (49%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE +P LRD P+A+ GS +R G++ NY A+K+ V++ Sbjct: 3 RVILHCDLNNFYASVECLYHPELRDKPVAVCGSIEDRHGIVLAKNYAAKKYKVKTGETVW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L ++ Y + S + R+I+ YT R+E LDE +LDV++S G T Sbjct: 63 EAKNKCPGLVVVKANHSLYYKFSKYARQIYEYYTDRVESFGLDECWLDVSESTLLFGDGT 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I EL +T S GV+ K AK+ SDM KP+ VIT + + LP+ Sbjct: 123 KIANEIRERIKRELGVTVSVGVSYNKVFAKLGSDMKKPDAVTVITENDFKEKIWGLPVEA 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VG + KL M + T GD+ C L+++ GK+G LW + G D V + E Sbjct: 183 LLYVGDSTKKKLNNMAVFTIGDLANCHSEFLVRQLGKWGYTLWSFANGYDTSPVAKNDCE 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KS+G T D+ + + +I L + RL +L + +K + Q Sbjct: 243 IPIKSIGNSLTAPRDLTNNEDVRILIYVLSESVGERLRS--HNLKGRTVQISIKDPELQT 300 Query: 298 TTQEHVWPRLN--KADLIATARKTWDERRG-GRGVRLVGLHVTLL-DPQMERQLVL 349 ++ +++ A + + + + VR +G+ VT L + Q+ L Sbjct: 301 LERQAGLDIHTSITSEIAQKAYEIFLKSWNWSKNVRALGVRVTDLVESDTCTQISL 356 >UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRW0_ALIAD Length = 409 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 169/348 (48%), Gaps = 8/348 (2%) Query: 9 MDCFFAAVEMRDNPA-LRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKLC 66 M+ F+A+ +PA PIA+ G R G++ TA+Y AR GV+ MP AL C Sbjct: 1 MNAFYASCHAAVDPARYAGKPIAVAGDPSTRHGIVVTASYEARARGVKPPMPVHQALARC 60 Query: 67 PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEI 126 P L ++ F Y+ + + I +T +E +S+DE Y DVT V +A+ I Sbjct: 61 PELIVVRPDFHLYRAYARKVFAIVREFTPDVEIVSIDECYADVT-HVPGGDRPVHLARAI 119 Query: 127 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGK 186 + + + L L +S GVAP KFLAK+ASDM KP G + + + L L + + GVG Sbjct: 120 QARLLDSLGLPSSIGVAPNKFLAKMASDMKKPMGITELRSENIRSLLWPLAIEHMHGVGP 179 Query: 187 VSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE-RLRKSVGV 245 +A +L +G+ T GD+ L +L + G L R+ GID R + +E + KSVG Sbjct: 180 STAKRLRRLGILTIGDLAVQSLDVLARALGPRAAELKARANGIDPRPLETEPQPPKSVGH 239 Query: 246 ERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWP 305 T+A+D ++E E ++ L + R+ + L+ V ++ + + + Sbjct: 240 SMTLAKDAQTFAEVEGVVMDLCDRVASRMR--RYGLMGRVVAVAVRDRRMRTSRHQDTLA 297 Query: 306 RL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 + +L AR + VRL+G+ V L P+ + + L L Sbjct: 298 TYVRHTGELFQAARALFQRIWPTEPVRLLGVSVEGLVPRDGQGVQLHL 345 >UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia RepID=B9MMT7_ANATD Length = 411 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 105/357 (29%), Positives = 166/357 (46%), Gaps = 10/357 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE P LR+ P+A+ G E R G++ N A+ +G+++ Sbjct: 3 RVILHCDLNNFYASVECLYQPELRNKPVAVCGESELRHGIVLAKNQIAKSYGIQTGDVIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALK CP+L +L F Y S ++ I+S YT IEP +DE +LDV+ S S Sbjct: 63 QALKKCPNLVILKPNFPLYIRFSKLVQRIYSEYTDLIEPFGIDECWLDVSQSTGILRSGR 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EI++ I +EL LT S GV+ K AK+ SD KP+ VIT + LP Sbjct: 123 KIAYEIKERIKSELGLTVSVGVSFNKVFAKLGSDYKKPDAVTVITKENFKQIVWPLPAKD 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS---E 237 + VG + KL + + T GD+ K L + GK+G +LW + G+D V E Sbjct: 183 LLYVGSATEKKLSSRAIYTIGDIAKSSPEYLKRILGKWGEVLWIFANGLDTTPVTPPLFE 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 K +G T+ D+ + + E +I L + +RL + L V ++ Sbjct: 243 DNIKGIGNSITLPRDLTCYEDAEYVIRMLSESVAQRLR--QQYLKCYTVQVWIRDSFLFS 300 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLD-PQMERQLVLG 350 T++ P ++ A + + + +R +G+ L QL Sbjct: 301 ITRQEKLKNPTFLAREISQKAFEIFKKHWNFKNSIRSLGVRALDLVCANSFYQLEFD 357 >UniRef50_Q654Y6 Os06g0691000 protein n=7 Tax=Poaceae RepID=Q654Y6_ORYSJ Length = 1125 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 114/359 (31%), Positives = 181/359 (50%), Gaps = 20/359 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTG 60 IIH+DMDCFF +V +R+ P L D P+A+ S +G IS+ANYPAR +G+++ M Sbjct: 378 TIIHIDMDCFFVSVVIRNKPELHDKPVAVCHSDNPKGTAEISSANYPARNYGIKAGMFVR 437 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CPHL ++P FDAY E ++ I +Y S+++ LS DEA+LD+T+ +H + Sbjct: 438 EAKARCPHLMIVPYDFDAYGEVADQFYGILHKYCSKVQALSCDEAFLDMTECLH--DNPE 495 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 + Q+IR IF + +ASAG++ +A++A+ KPNGQ I+ +V +L TL + Sbjct: 496 EVTQKIRNEIFGTTKCSASAGISGNMLIARLATRSAKPNGQCFISSEKVDGYLNTLSIKA 555 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239 +PG+G + KL++ + CG ++ L K FG K G +LW +GID V + + Sbjct: 556 LPGIGHTVSDKLKSKEVEYCGQLRNIPKESLHKDFGKKIGDMLWNYCRGIDHSVVEAVQE 615 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVK---------L 290 KSVG E + + E + L E+ RL +K + Sbjct: 616 TKSVGAEVNWGVRFNDNKDAENFLVNLSKEVCLRLEGCGVQGRTITLKLKTRRKGAGEPI 675 Query: 291 KF---DDFQQTTQEHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQM 343 KF D + ++ N L A++ + + VR VGL ++ L+ Sbjct: 676 KFMGCGDCETVSRSMTIAGATDNPVTLQRIAKQLFSSFCVDVKEVRGVGLKISRLEHAD 734 >UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E013_METI4 Length = 365 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 115/343 (33%), Positives = 176/343 (51%), Gaps = 10/343 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAI-GGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 VD+D F+ +VE +P R++P+A+ GS RGVI TA+Y ARK+GV+S MP AL Sbjct: 28 FFVDLDAFYVSVERLRHPEYREMPMAVYTGSLNGRGVIMTASYEARKYGVKSGMPIRQAL 87 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 CP + L+ Y+E SN + + R++ RIE +S+DE L V S+ A Sbjct: 88 YHCPGIMLVAAHPSLYEEYSNSVYSLLKRFSERIERVSIDENCLVVPSSI----DPETTA 143 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 I+ I ++ L +S GV K +AK+A D+ KP G VI P AFL LP+ KIPG Sbjct: 144 TAIQAAIGAKIGLPSSIGVGSNKLIAKMACDLAKPQGIRVIPPGYEKAFLAPLPVEKIPG 203 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG + AMG+ T D+ K D L ++FGK G + +QGID+ + ER +S+ Sbjct: 204 VGPATLKIFHAMGIVTIDDLSKVDEQTLREKFGKRGAYFYNAAQGIDKSPLQLERTPRSL 263 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 E T DI ++S + ++ L +L L K K L+ +KL++ DF ++ Sbjct: 264 SREITFDRDIKNFSILQRVLVSLSRDLADSLRKEK--LVAKTVFLKLRYSDFSTNLRQFS 321 Query: 304 W--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQM 343 P + ++ + + +RL+GL + L + Sbjct: 322 LSSPTDDPTEIATCGLLLLKRNIKKEKALRLIGLGLRNLTAKT 364 >UniRef50_Q47E66 UMUC-like DNA-repair protein n=2 Tax=Betaproteobacteria RepID=Q47E66_DECAR Length = 387 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 106/365 (29%), Positives = 176/365 (48%), Gaps = 31/365 (8%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE--------------------RRGVI 41 R+I H+DMD FFA+VE+ + P LR P+ +GG RGV+ Sbjct: 12 RRIAHLDMDAFFASVELLNYPELRGQPVVVGGRNVNQPISQPDGTKRFGRLREYVGRGVV 71 Query: 42 STANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLS 101 +T+ Y AR FGV S M + ++ P LLP FDAY S + + IE Sbjct: 72 TTSTYEARAFGVFSGMGLMKSAEMAPGTILLPANFDAYLNYSRRFKAAVATIAPLIEDRG 131 Query: 102 LDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQ 161 +DE Y+D++D + +A+ I+Q +F+ LT S G+ P K L+KI SD+ KP+G Sbjct: 132 IDEIYIDLSD---IDEESLPLARRIKQAVFDATGLTCSIGITPNKLLSKICSDLQKPDGI 188 Query: 162 FVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGR 220 ++ A++ + + L KI G+G + +LE +G++T G + + +LL FG+ G+ Sbjct: 189 TILGIADIESRIWPLAAKKINGIGPKANERLEKLGIQTIGQLAATPVELLLNHFGRSTGQ 248 Query: 221 ILWERSQGIDERDVNSERLRKSVGVERTMAEDIH---HWSECEAIIERLYPELERRLAKV 277 + + + G D+R V + R KS+ E T D+H SE I + + L Sbjct: 249 WMHQVAHGRDDRPVKTSRETKSISRESTFQRDLHAKQDRSELSEIFTGICLRVADDLK-- 306 Query: 278 KPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLH 335 + L+ G+K+++ DFQ T++ + A + + +RL+G+ Sbjct: 307 RKGLVAKTIGIKVRYADFQAVTRDFTLDLATDDGMTIRRAAGECLKRVPLEKRIRLLGVR 366 Query: 336 VTLLD 340 + L Sbjct: 367 ASALA 371 >UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FCD1 Length = 419 Score = 329 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 176/352 (50%), Gaps = 9/352 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +H+DMD FF +VE+ P L P+ +GG R RGV+ +A+Y AR+FGV +AMP G A+ Sbjct: 26 LHLDMDSFFVSVELLSRPELVGRPVIVGG-RSGRGVVVSASYEAREFGVHAAMPMGRAMN 84 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQ 124 LCP ++P Y S + ++ ++ T + +S+DEAY+DV+ +V GS I Sbjct: 85 LCPFAEVIPPSHGLYSSYSQKVFDLVAQVTPDFQQVSVDEAYIDVSAAVRRLGSPVRITS 144 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 ++R I + L+AS G+A + +AK+AS KP+GQ ++ + FL +P+ +PGV Sbjct: 145 QLRAEIEAQTGLSASVGIAGSRVVAKLASTRAKPHGQLLVPLSATREFLDPMPIEALPGV 204 Query: 185 GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVG 244 G+ + G+R GD+ D + FG G LW + G+D ++ + +S+ Sbjct: 205 GEKTKEGFFRYGIRLIGDLAAVDEAWAGRVFGAHGHHLWRSAHGLDSHGMDRQVKDRSIS 264 Query: 245 VERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW 304 E T ED+ S+ E + RL ++ R+ + G+K + DF ++ Sbjct: 265 AEHTFNEDVWDLSQLEHELLRLADKVAHRVRADGK--VATTLGLKYRLADFTTLSRSITL 322 Query: 305 --PRLNKADLIATARKTWD--ERRGGRGVRLVGLHVTLLDP--QMERQLVLG 350 P ++ R + +GVRL+G+ L RQ+ L Sbjct: 323 DAPTDLAREIYEALRPAMRNLREQKSKGVRLLGVRAAGLMDFSASGRQVRLD 374 >UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutylicum RepID=DPO4_CLOAB Length = 396 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 102/358 (28%), Positives = 180/358 (50%), Gaps = 13/358 (3%) Query: 2 RKIIHVDMDCFFAA---VEMRDNPA---LRDIPIAIGGS-RERRGVISTANYPARKFGVR 54 + I HVD++ F + VE N +R +P IGG + R GV+ + PA+K+G+ Sbjct: 3 KVIFHVDVNSAFLSWTAVEKLKNGEDIDIRKVPSVIGGDEKSRHGVVLAKSTPAKKYGIV 62 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + A K CP++ + P RFD Y++AS + + R+T IE S+DE ++DVT+ + Sbjct: 63 TGESLYHARKKCPNILVFPPRFDTYRKASESMMNLLKRFTPHIEKYSIDECFMDVTNDLR 122 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 S A I++ I NEL T + G++ + LAK+AS++NKP+ + E+ + Sbjct: 123 GMES-VEFASIIKERIKNELGFTVNVGISTNRLLAKMASELNKPDKINTLYKHEIKDKMW 181 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP+ ++ VGK KL + ++T G++ K D+ +L +F G ++WE + GID D+ Sbjct: 182 PLPVGELFMVGKSMKRKLNELHIKTIGELAKYDVNILKAKFKSHGNMVWEYANGIDNSDI 241 Query: 235 -NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 K + E T++ D+ + I+ L L +RL + V ++ Sbjct: 242 SRYRDEIKCISNETTLSMDLTDTEKIHKILVTLCENLGQRLRDA--NKYCTSISVNIRTS 299 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 DF+ + + + D+I A K ++E G +RL+G+ ++ L Q+ + Sbjct: 300 DFRNYSHQKKLKNAVSSTRDIILYADKIFNEMWGREPIRLLGVQLSGLCSGSSVQISM 357 >UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8L3_9ACTN Length = 432 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 111/345 (32%), Positives = 176/345 (51%), Gaps = 9/345 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I +D+D FFA+VE D+P R P+ +GGS E+RGV+ST +Y AR +GVRSAM + A Sbjct: 23 IGLMDLDAFFASVEQLDHPEWRGKPVIVGGSPEKRGVVSTCSYEARVYGVRSAMSSAQAK 82 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP PG FD Y+E S + I + T ++ +S+DEA+ D++ C IA Sbjct: 83 RLCPEAIWTPGHFDRYREMSARVMAILADETPFVDRVSIDEAFFDISPGRFCDEHPIQIA 142 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 Q I + + +EL +T S G+ K +AKIAS+ +KP G ++TP FL LP+ + G Sbjct: 143 QRISRRV-SELGITCSIGLGRNKTVAKIASERDKPRGLTIVTPGTEHGFLAPLPVRAMSG 201 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR--- 240 +G + + L +G+RT G + + +L FG ++ R+ G++ +V + Sbjct: 202 IGAAAESALARVGIRTLGQLAEASDGLLSPIFGINTELVRRRAAGLEVSEVRAIDAPDDV 261 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ ERT A D+ S+ +A I+ L + + L +KLK+ + T Sbjct: 262 KSISNERTFAHDLTDPSDVKAAIQLLSESVGA--RLRRRGLAGRTVTLKLKYSFGEGRTI 319 Query: 301 EHVWPRLNKADLI--ATARKTWDERR-GGRGVRLVGLHVTLLDPQ 342 + + + A AR G +RL G+ V+ P Sbjct: 320 QRKLAHATDDENVFGAVARDLLASIWTEGMHIRLAGVGVSDFGPD 364 >UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A0M5X6_GRAFK Length = 406 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 175/350 (50%), Gaps = 7/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + IIH+D+D FF + E R++P L P+ +GG + RGV++ +Y R FGV S MP + Sbjct: 5 KSIIHLDLDTFFVSAERREHPELNKKPVIVGGLGD-RGVVAACSYETRNFGVHSGMPMKV 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP T++ G Y + S+ + E+ E S+DE Y D+T G Sbjct: 64 ARQLCPAATVIKGNASIYTKFSHEVTEVIRSKVPSFEKASVDEFYADLTGMDRFFG-INQ 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A+E++Q+I E +L S G++ K ++KIA+ KP Q +I P FL LP+ KI Sbjct: 123 FAKELQQSILKETRLPISFGLSQNKIVSKIATGEGKPYAQKIIDPGTEKNFLAPLPVNKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 P VG + KL +G+R +QK + +L GK GR +W+R+ GID + RK Sbjct: 183 PMVGNKTFQKLLNLGIRRIETIQKMPVEVLESVLGKNGRTIWKRAHGIDNPPIIPFHERK 242 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ERT D A + + L +L + + L + V++++ DFQ +++ Sbjct: 243 SISTERTFNRDTIDMVRLHATLVAMAESLAYQLR--RGNKLTSNVSVRIRYSDFQTYSKQ 300 Query: 302 HVWPRLNKADL-IATARKTWDERRGGRG-VRLVGLHVTLLDPQMERQLVL 349 + + I + + + R +RL+G+ + L Q+ L Sbjct: 301 AKISYTSADHILIPKVEELFKQLYSRRMLIRLIGVRFSGLVGGHY-QINL 349 >UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteriaceae RepID=C8WAH8_ATOPD Length = 444 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 109/348 (31%), Positives = 169/348 (48%), Gaps = 9/348 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I +D+D FFA+VE D+P R P+ +GGS +RGV+STA+Y ARK+GV SAM + Sbjct: 23 KAIGLLDLDAFFASVEQLDHPEWRGKPVIVGGSPHKRGVVSTASYEARKYGVHSAMASAT 82 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A+KLCP PGR++ Y E S+ + T +E +S+DEA+ D+T + Sbjct: 83 AVKLCPQAIWTPGRYNRYSEMSSLVMGFLKDETPLVEQVSIDEAFFDITPGRFSKENPLE 142 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I + I++ + L +T S G+ K +AKIAS+ KP G + P FL LP+ + Sbjct: 143 ICKRIQKKV-AALGITCSIGLGTNKTIAKIASEQEKPRGLTAVFPGTESHFLAPLPIEAM 201 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN---SER 238 G+G A L G+RT G++ + D L G + R+QG + +V+ R Sbjct: 202 SGIGPAMAKTLHQQGIRTLGELSRADSTYLTSFVGNTASKMILRAQGKEVSEVHEAAHPR 261 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KSV ERT D+ E E I + + RRL K + +K+K + Sbjct: 262 DVKSVSNERTFETDLFDKQEIEEAIRHISGVVGRRLRKKQLQGF--TVTLKVKASATESH 319 Query: 299 TQEH--VWPRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQM 343 T + P ++ A G+ VRL+G+ ++ + Sbjct: 320 TVQKRMSIPTDDEHLFAEIAVNLLPTIWKEGQPVRLLGVGISSFTDED 367 >UniRef50_UPI000180C22E PREDICTED: similar to polymerase (DNA directed), kappa n=1 Tax=Ciona intestinalis RepID=UPI000180C22E Length = 706 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 190/382 (49%), Gaps = 50/382 (13%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIH+DMD F+AAVE RD P L+ P+A+GG ++ST+NY ARK+GVR+AMP + Sbjct: 106 RTIIHIDMDAFYAAVEERDRPELKQKPMAVGGMD----MLSTSNYVARKYGVRAAMPGFI 161 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------- 114 A KLCP+L ++P FD Y+E S +EIFS Y +SLDEA+LD+TD + Sbjct: 162 AKKLCPNLIIVPTNFDKYREVSKETQEIFSEYDENFCGMSLDEAFLDITDHLQKRLIYDQ 221 Query: 115 ----------------------------CHGSATLIAQEIRQTIFNELQLTASAGVAPVK 146 SA +A+EIR I + LTASAG+AP Sbjct: 222 EERTFHYHPTLAPTTTSEDTDDKKSSETFGFSAEEVAKEIRFRIQQKTLLTASAGIAPNT 281 Query: 147 FLAKIASDMNKPNGQFVITP--AEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQ 204 LAKI SD+NKPNGQ P E+ F++ P+ K+ G+GKV+ L ++G++ CGD+ Sbjct: 282 MLAKIGSDLNKPNGQTFFAPNRDEIMKFIKDFPVRKVNGIGKVTEQLLSSLGVQKCGDIY 341 Query: 205 KCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIE 264 + ++L + G + + RKS+ ERT + I + E A ++ Sbjct: 342 EMRAELMLLFSATSCSFFFRMCLGCSSNILEPDGERKSISTERTFST-ISNRDELFAKLD 400 Query: 265 RLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW--PRLNKADLIATARKTWDE 322 L L + K ++ +K K DFQ T+ P N + A++ + Sbjct: 401 ELCHSLAADMK--KQNVQGKTLTLKTKNVDFQLHTRSKTINVPMTNYQTIFPVAQELLKQ 458 Query: 323 R----RGGRGVRLVGLHVTLLD 340 +RL+G+ ++ L+ Sbjct: 459 EILNANNKLSLRLMGVGLSKLE 480 >UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FVJ8_9FIRM Length = 405 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 103/357 (28%), Positives = 163/357 (45%), Gaps = 13/357 (3%) Query: 4 IIHVDMDCFFAAVE----MRDNPA---LRDIPIAIGGSRE-RRGVISTANYPARKFGVRS 55 I HVD++ F + E +RDNP LR I IGG + R GV+ + A+K+G+ + Sbjct: 12 IFHVDVNSAFLSWESAKRLRDNPDALDLRTINAVIGGDEKMRHGVVLAKSPSAKKYGIMT 71 Query: 56 AMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 P A + CP L ++P + Y +S EI IE S+DEA+ D+T + Sbjct: 72 GEPLSHARQKCPELVVVPPDHELYAASSRKFIEILEEVAPVIEQCSIDEAFCDMTGTEKL 131 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 +G A +++ I+ EL T + G++ K LAK+ASD KPN + P E+ Sbjct: 132 YGDPIAFATKLKDRIYKELGFTVNIGISTNKLLAKMASDFEKPNRVHTLFPEEMATKFWP 191 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 LP+ + G GK +A +L ++G+ T G + K D MLL F G LWE + GI V Sbjct: 192 LPVESLYGCGKTTAKRLRSLGITTIGALAKADRQMLLSNFKSQGDYLWESANGISSSAVT 251 Query: 236 SERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +E K G T+ D+ I+ L + R+ K I+ V++ +D Sbjct: 252 AESPANKGYGNSVTLPYDVTDTENAHHILLSLCETVGARIRYDKA--YISVVQVQIVDND 309 Query: 295 FQQTTQEHVWPRLN--KADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F ++ P + A +D+ +RL+G+ + + Q L Sbjct: 310 FHHRCKQLSLPSATNVTEKIYEAACNAFDQGWDHAPIRLLGVSTSKATDESYEQYNL 366 >UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidobacterium RepID=A1A051_BIFAA Length = 471 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 176/365 (48%), Gaps = 20/365 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++H+DMD FFA++E+ +P D P+ IG R V+S ANY ARK+G+ SAM + A Sbjct: 50 TVLHIDMDAFFASLEVARHPEYADKPVIIGIGN--RSVVSAANYEARKYGINSAMASSRA 107 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIR-EIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 KLCP+ LP Y+E S I E+FSR T RIE +S+DE Y+DV+ ++ S Sbjct: 108 RKLCPNGVFLPVDIHYYREMSRRIFTEVFSRVTDRIEQVSVDECYMDVSGALLRWKSPRA 167 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I IR + +T S G+A K +AK+AS KP+G +I A F+Q +PL I Sbjct: 168 IGAWIRDQVARRYHITCSVGIAANKLVAKMASTNAKPDGMLMIPVARHAEFVQMMPLRGI 227 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF--GRILWERSQGIDERDVNSERL 239 PG+G +L A G+ + D+ K + L + G R L+ ++G+D+R V Sbjct: 228 PGIGPSLEKRLNAWGVDSVADLAKMSMESLEQATGSAISARGLYMAARGLDDRPVAPRAQ 287 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 KSVG ERT +D + +++ ++ L + L+ + VKL+F D T Sbjct: 288 GKSVGAERTFDKDTQDMRQVTSMLRWCCDDVAGTLR--RRGLMARKVMVKLRFPDLSYAT 345 Query: 300 QEHVW--PRLNKADLIATARKTW-----------DERRGGRGVRLVGLHVTLLDPQMERQ 346 + H P + L D R VRL G+ L + Sbjct: 346 KGHTLDCPTDAASMLYPQCVALLLAMMGMPESSIDAISLTRPVRLAGMSAGGLVEAADAA 405 Query: 347 LVLGL 351 + L L Sbjct: 406 VQLSL 410 >UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9LBG3_RUMHA Length = 426 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 97/359 (27%), Positives = 170/359 (47%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPA------LRDIPIAIGGSR-ERRGVISTANYPARKFGVR 54 + I H+D++ F + E LR+IP A+GG + +RRG+I + A+ GV+ Sbjct: 6 KVIFHIDVNSAFLSWEAVYRLEQGGTVDLREIPCAVGGDKTKRRGIILAKSLSAKACGVK 65 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + P ALK CP L ++ Y++ S I Y+ +E S+DEA++D+T Sbjct: 66 TGEPLTEALKKCPSLIVVSAHHSMYRQYSQKFLNILREYSPSVEQYSIDEAFMDMTGMEK 125 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 G+ A +++ I EL T + G++ K+LAK+ASD KP+ + P E+ + Sbjct: 126 LIGNPVAFAHKLKNRISKELGFTVNIGISGNKYLAKMASDFEKPDKVHTLFPTEIKTKMW 185 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP++ + VG+ + L+ +G+ T GD+ D+ +L K G +W + G D V Sbjct: 186 PLPVSDLLFVGRATTQVLKKLGIYTIGDLANTDVEILKCHLKKQGESIWNFANGRDTSLV 245 Query: 235 NSERL-RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 SE K G T+A D+ + ++ L + RL K D+ V ++ Sbjct: 246 ESESQGNKGYGNSTTIAFDVTDEGTAKMVLLSLCETVAARLR--KDDVKAEVVSVSVRDF 303 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME-RQLVL 349 + + + + V P ++ T +DE G +R +G+H + + + RQ+ L Sbjct: 304 EMKTVSHQRVMAAPTNITGEIYDTVCVLFDELWDGMPIRHLGVHTSRVSKEERGRQMSL 362 >UniRef50_Q5QZ82 DinP n=2 Tax=Idiomarina RepID=Q5QZ82_IDILO Length = 356 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 151/353 (42%), Positives = 209/353 (59%), Gaps = 6/353 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKI +D+D FFA+ E +P+L+ P A G RGV++TANY AR+FGV+SAMP Sbjct: 6 RKIALLDLDAFFASAEELRDPSLKTRPFA-VGGGGERGVVATANYLARQFGVKSAMPGSH 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LT + + Y+E S+ + +I T RIEP S+DE YLD+T GSATL Sbjct: 65 ARRLCPQLTFIRPDGNYYRELSDKVLDILRELTPRIEPASIDEFYLDLTHLEGFKGSATL 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +R+ I L +T SAG++ K +AKIAS+ KP+GQFV+ PAEV ++ L L +I Sbjct: 125 AMDFVREQIKT-LGITGSAGISNQKMVAKIASEERKPDGQFVVRPAEVMDYIAALNLKQI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PGVG S L GL T D+Q +L L G K G +L+ER G D R+V +ER+R Sbjct: 184 PGVGPKSQQVLTNYGLTTGKDIQNIELQQLQAILGDKAGYVLFERCHGRDRREVVTERIR 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIE-RLYPELERRLAKVK-PDLLIARQGVKLKFDDFQQT 298 KSVGVE+T+A D+ S +A ++ L P+L +R+ + I Q +KLKF DF QT Sbjct: 244 KSVGVEQTLATDMRLESTAQAYVQDNLLPKLRQRMKITHWREQPIRSQTLKLKFSDFTQT 303 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T ++ + + W +R G+GVRL+G+ TL DP + QL L L Sbjct: 304 TVSRSAQFISPSLFYQLLDEAW-QRGKGKGVRLLGISATLPDPNEQLQLELEL 355 >UniRef50_D1BHR1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Actinomycetales RepID=D1BHR1_SANKS Length = 489 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 120/357 (33%), Positives = 181/357 (50%), Gaps = 11/357 (3%) Query: 1 MR---KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAM 57 MR I H+D D FFA+VE P+LR P+ G RGV++TA+Y AR +G RSAM Sbjct: 1 MRARPTIAHLDADAFFASVEQHQRPSLRGRPVL-VGGVGPRGVVATASYEARAYGARSAM 59 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 P A ++CP T++ RFDAY S I E+ + ++E +S+DEA+ ++ Sbjct: 60 PMEQARRMCPTATVVVPRFDAYSAYSAQIMEVLREVSEQVEAISIDEAFAELDHLPGSSA 119 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 +A E R+ L+ S G+ K +AK+AS+ KP G V+ PA+ AFL LP Sbjct: 120 DLEALALEFRRRAHERTGLSVSLGLGRSKLVAKLASEAAKPGGVKVVDPADEDAFLLALP 179 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNS 236 + + GVG VSAA+L+ +G+RT D++ + L+ G+ G L+ ++G D+R V + Sbjct: 180 VRALWGVGPVSAARLDQLGVRTVEDLRAQPMDTLVMATGEAAGTNLYRIARGWDDRPVTT 239 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R RKS G E T +D+H A ++ + RRL + + VK++ F Sbjct: 240 VRERKSAGAEHTFDDDLHGRRAIAAALDGVTDSALRRL--DRHGVAARTVVVKVRVASFT 297 Query: 297 QTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ P + L AR+ D VRL+G+ L QL+L L Sbjct: 298 TITRSVTLSRPTSDVDALREAARRALDLAEVVEPVRLLGVSFHGLSAHS--QLMLPL 352 >UniRef50_Q9UBZ9 DNA repair protein REV1 n=27 Tax=Tetrapoda RepID=REV1_HUMAN Length = 1251 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 111/408 (27%), Positives = 182/408 (44%), Gaps = 70/408 (17%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE--------------------------- 36 I+HVDMDCFF +V +R+ P L+ P+A+ +R Sbjct: 419 IMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGK 478 Query: 37 -------------------------RRGVISTANYPARKFGVRSAMPTGMALKLCPHLTL 71 R I++ +Y AR+ G+++ M G A +LCP+L Sbjct: 479 AADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQA 538 Query: 72 LPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTI 130 +P F AYKE + + E + YT IE +S DEA +D+T+ + + A +R I Sbjct: 539 VPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEI 598 Query: 131 FNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAA 190 ++ + AS G+ LA++A+ KP+GQ+ + P EV F++ + +PGVG + Sbjct: 599 KDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMES 658 Query: 191 KLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTM 249 KL ++G++TCGD+Q + L K FG K G++L+ +G+D+R V +E+ RKSV E Sbjct: 659 KLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINY 718 Query: 250 AEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK-------FDDF------Q 296 E EA + L E++RRL + ++ F Sbjct: 719 GIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICD 778 Query: 297 QTTQEHVWPR-LNKADLIATARK-TWDERRGGRG-VRLVGLHVTLLDP 341 + + + A +I A + + +R VG+HV L P Sbjct: 779 NIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLVP 826 >UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria RepID=A3VP13_9PROT Length = 422 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 126/348 (36%), Positives = 182/348 (52%), Gaps = 13/348 (3%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I HVD D FFAA+E RD+P+L D P+ +GG RGV+ST Y AR +G+ SAMP A Sbjct: 35 IAHVDCDAFFAAIEKRDDPSLVDKPVLVGGG--HRGVVSTCCYIARSYGIHSAMPMFKAK 92 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS-ATLI 122 LCP ++P R AY+EA+ IR++ + T I+P+S+DEAYLD+ + HG+ + Sbjct: 93 ALCPQAVIVPPRGAAYREAAAQIRDLMAPLTPLIQPVSIDEAYLDLGGTERLHGAIPAQL 152 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 ++ + + ++ +T S G++ K LAKIASD +KP G +I E FL P +P Sbjct: 153 LAKLAKDVETQIGITLSIGLSVNKLLAKIASDFDKPRGFTLIGGTEAANFLAPYPPGLLP 212 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 G+G + KL G RT GD+Q C L+ R+G+ G L R+ G D R V +R KS Sbjct: 213 GIGTRFSEKLMRDGFRTLGDLQHCSTRELVDRYGEHGLTLRARACGEDPRPVTVDRETKS 272 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR-QGVKLKFDDFQQTTQE 301 V E T DI + E + + ++ R K L R +KLK F+ T+ Sbjct: 273 VSGETTFRADIGDAAALEDHLYAMARKVSSR---AKEKGLAGRVVTLKLKTARFRTFTRR 329 Query: 302 HVWPRLNKAD--LIATARKTWD-ERRGGR-GV--RLVGLHVTLLDPQM 343 P + + AR E + GR V RL+G ++ L P Sbjct: 330 QTLPHASNLTRVIFDCARAMLTAELQKGRTPVTYRLIGAGISDLVPAE 377 >UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=C4G590_ABIDE Length = 447 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 108/371 (29%), Positives = 184/371 (49%), Gaps = 25/371 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D +CF+A+VE+ +P LR P+A+GG+ E R G++ TA+Y A+++GV++ M Sbjct: 21 RTILHSDCNCFYASVELLHHPELRGKPVAVGGNPEARHGIVLTADYTAKRYGVKTGMALW 80 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A ++CP + LP R D Y S +EI+S YT +IEP +DE++LDV++S G Sbjct: 81 QAKQVCPDIIFLPPRMDLYLRFSRMAQEIYSEYTDKIEPFGIDESWLDVSESAGIKGDGY 140 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EI + + EL +T S GV+ K AK+ SD KP+ + E A LP+A Sbjct: 141 AIAKEISERMKKELGITVSIGVSFNKIFAKLGSDYKKPDAITTMGKDEYKAKAWPLPVAN 200 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VG+ ++ K MG++T GD+ D +L+K+ GK G +L + G D+ V N+ Sbjct: 201 LLYVGRATSRKFADMGIKTIGDLATMDEGILIKKLGKIGSVLHAFANGYDDSPVKLENTS 260 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KSVG T +D+ + + ++ L + RL + + L+ + Sbjct: 261 APVKSVGNSTTTPKDMKTDEDVKIVLYILAESVAARLRE--NGFRCRTVEISLRDKELFH 318 Query: 298 TTQEHVWPRLN--KADLIATARKTWDERRG----------------GRGVRLVGLHVTLL 339 +++ + A++ A + + + +R +G+ T L Sbjct: 319 FSKQVKLKNASNITAEIAEAAYLLYKKNYRLPADEEELKNSIPEFYQKPLRSIGICGTDL 378 Query: 340 DPQME-RQLVL 349 Q+ + Sbjct: 379 VTDYYWEQMDI 389 >UniRef50_D1Y4D1 DNA polymerase IV n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4D1_9BACT Length = 412 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 124/352 (35%), Positives = 176/352 (50%), Gaps = 7/352 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 +IHVDMD F+AAVE+RDNPAL+ P+ IG + RGV++T +Y ARKFGV SAM A Sbjct: 4 TVIHVDMDAFYAAVEIRDNPALKGRPLIIGALPDERGVVATCSYEARKFGVHSAMNIKEA 63 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 + CP + + Y++AS+ + I+S Y E ++LDE YLDVT S G A + Sbjct: 64 YRRCPRGIFMHPNREKYRQASDRLHGIWSSYADVAEYVALDEGYLDVTRSALRFGGARRV 123 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQF-VITPAEVPAFLQTLPLAKI 181 A+ I++ E LT S GV K AK+AS+ KP+G F ++TP + + + + Sbjct: 124 ARLIKERTRAETGLTCSVGVGYSKTSAKLASEEKKPDGYFEILTPRDFIGLIIDRDITVL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNS--ER 238 GVG +A KL G+ T DVQ + L GK GR L E S GID+R V E Sbjct: 184 YGVGARTAEKLYHAGIHTVRDVQN-NRERLAALLGGKTGRHLAELSLGIDDRPVIPADEA 242 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+ E T +D H+ +I L L RLA + + +K + + + Sbjct: 243 DAKSISREVTFQKDTSHFGYLRDVILLLSLNLGDRLAALGLNGR--TVTLKATYWNMKTI 300 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 T+ H ++ I A VRL+G+ + L RQL Sbjct: 301 TRSHSGESVDHPYEIYQAGSALLAGIEKSPVRLIGVGLQNLSETYARQLTFD 352 >UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=Q0FEJ5_9RHOB Length = 391 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 123/343 (35%), Positives = 192/343 (55%), Gaps = 7/343 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 H+D D F+A+VE RDNP +D P+ IGG +RGV+STA Y AR GV+SAMP ALK Sbjct: 12 AHIDCDAFYASVEKRDNPKFKDKPLIIGGG--QRGVVSTACYIARIKGVKSAMPMFKALK 69 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA- 123 LCP ++ R DAY +AS I E+ S + IEPLSLDEA++D+ + HG ++ Sbjct: 70 LCPEAIVIAPRMDAYAKASKEINEMMSELSPSIEPLSLDEAFIDLRGTEKLHGEPPALSM 129 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + Q I +L+++AS G++ K+LAK+ASD++KP G +I ++ FL + I G Sbjct: 130 ARLVQRIEKQLKISASVGLSYNKYLAKLASDLDKPRGFSIIGKYKIEEFLAPKSIGLIWG 189 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VGKV+ +LE G+R D+Q+ L+ ++ G LW +GID R+V ++ + KS+ Sbjct: 190 VGKVAQMRLEQDGIRIFADLQRRSHQELIDKYQNMGDHLWHLCRGIDNRNVIAKNVIKSI 249 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 E T + DI++ + + I RL ++ +R +LL +K+K F+ ++ Sbjct: 250 SKETTFSSDINNIEKLDGYIWRLSEQVSQRAKS--KNLLGHVITLKIKTKKFKTISRRKT 307 Query: 304 W--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 P + A AR+ DE RL+G+ ++ L + Sbjct: 308 QREPTQIAEKIYAEARRMLDEVASEGPFRLIGVGISNLIDADK 350 >UniRef50_C3Y6K1 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3Y6K1_BRAFL Length = 1191 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 168/345 (48%), Gaps = 51/345 (14%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR---------------------- 38 ++ ++H+DMDCFF +V +R++P LR P+A+ S+ + Sbjct: 378 IKVVMHLDMDCFFVSVGLRNHPNLRGKPVAVTHSKGKGHEQKIRPGMDPEYERAYWEKRA 437 Query: 39 ---------------------------GVISTANYPARKFGVRSAMPTGMALKLCPHLTL 71 I++ +Y ARK GV++ M G ALKLCP L Sbjct: 438 PHRHSITDKTEDNATRGNAQRDTYMSFSEIASCSYEARKAGVKNGMFMGPALKLCPDLKT 497 Query: 72 LPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTI 130 +P F+ YKE + + I + YT IE +S DEA++DVTD + + +A +R+ I Sbjct: 498 IPYDFEGYKEVAQEMYGILASYTHEIEAVSCDEAFVDVTDILADTGATPDDLATVLRKEI 557 Query: 131 FNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAA 190 + Q AS G+A LA++A+ KPNGQF + P EV F+ + ++PGVG+ + Sbjct: 558 LEKTQCPASVGLASSVLLARMATKRAKPNGQFYLPPEEVLDFVSPQTVRELPGVGRSLES 617 Query: 191 KLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTM 249 +L+ MG+ TCGD+QK L L + FG K G+ L+ +G D+R + ER RKSV E Sbjct: 618 RLKVMGVVTCGDLQKVTLPTLQREFGPKTGQALYRSCRGQDDRQLKVERERKSVSAEINY 677 Query: 250 AEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +E E + L E++RRL K V + D Sbjct: 678 GIRFTKDTEAETFMYNLAEEVQRRLQKAGLKGKTVTLKVMARKAD 722 >UniRef50_A5Z8E0 Putative uncharacterized protein n=10 Tax=Clostridiales RepID=A5Z8E0_9FIRM Length = 428 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 184/367 (50%), Gaps = 20/367 (5%) Query: 1 MRKIIHVDMDCFFAAV-------EMRDNP---ALRDIPIAIGGSRE-RRGVISTANYPAR 49 M I H+D++ + + E + +R+IP IGG RE R G++ + A+ Sbjct: 1 MGIIFHIDVNSAYLSWTAVKLLKEATKDEKKIDIRNIPAIIGGDREKRHGIVLAKSISAK 60 Query: 50 KFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV 109 KFG+ + P AL+ CP++ ++P Y E S+ + + +T IE +S+DE Y+D Sbjct: 61 KFGIVTGEPIANALQKCPNILIVPPEHGYYNEQSHKLMNLLRTFTPDIEQVSVDECYMDF 120 Query: 110 TDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEV 169 + + + S A +I+ T+ +L T + G++ VK LAK+ASD KP+ + E+ Sbjct: 121 SGIQNEYPSPLACAYKIKDTVKEKLGFTVNVGISDVKVLAKMASDFTKPDKVHTLYRREI 180 Query: 170 PAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGI 229 + LP+ ++ GK S L +G+ G + +L K G+ILWE + GI Sbjct: 181 KEKMWQLPVEELYMAGKSSVNTLHKLGIYNIGQLATSPEYILEAHLKKHGKILWEYANGI 240 Query: 230 DERDVNSERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV 288 D+ VN++R K VG T+ D+ + E E I+ +L ++ RL K K + V Sbjct: 241 DKSVVNTKREELKGVGNSITLPYDLDNMEEIEKILLQLSEKVAGRLRKGKQ--MAKTVAV 298 Query: 289 KLKFDDFQQTTQEHVWPRLNKA--DLIATARKTWDERR---GGRGVRLVGLHVTLLDPQM 343 ++K++DF + +++ R + ++ +++ + E G + VRL+G+ L+ Q Sbjct: 299 EVKYNDFIKASRQTTLDRCTDSGTEIYQLSKELFRELWEKDGNKSVRLLGIRTANLEEQG 358 Query: 344 E-RQLVL 349 Q+ + Sbjct: 359 ALEQMSI 365 >UniRef50_C3PHE2 DNA polymerase IV n=10 Tax=Corynebacterineae RepID=C3PHE2_CORA7 Length = 492 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 163/353 (46%), Gaps = 10/353 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H+DMD FFA+VE P LR P+ +GG RGV++ A+Y AR +G SAMP Sbjct: 14 RWVLHIDMDAFFASVEQLTRPTLRGRPVLVGG-TSGRGVVAGASYEARAYGAHSAMPMFR 72 Query: 62 ALKLCP-HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSA 119 A +L ++ R Y AS + I +++ IE LS+DEA+++ + Sbjct: 73 AQQLVGYRAVVVQPRRAVYSAASRRVFGIIAQHAGVIEQLSIDEAFMEPAALLGATPAEV 132 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 ++ +R+ I E L +S G K AKIAS KP+G FV+ + LP+ Sbjct: 133 REWSENLRRVIRTETGLPSSIGAGAGKQSAKIASGEAKPDGTFVVPQERFKELIHPLPVG 192 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNSER 238 K+ G G V+ KL A+G+ T G + + G G LWE +QGIDER V Sbjct: 193 KLWGAGPVTQQKLAAIGVETIGQLAAMSRKEVEISLGGVVGVQLWELAQGIDERPVAPRA 252 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 + K + E T D+ +E +A + R RL +K VKL+ DF Sbjct: 253 IAKQISTEFTYPTDLRTAAEVDAALIRAAHGAHSRL--LKDGRGARTVTVKLRMADFHIE 310 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGR--GVRLVGLHVTLLDPQMERQLVL 349 ++ + A+ R +RLVG+ + L+ RQ VL Sbjct: 311 SRSATLSYATDDLKVLEAKALSLARYPEELGPIRLVGVSYSGLEEA--RQDVL 361 >UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteria RepID=A6NU31_9BACE Length = 414 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 110/360 (30%), Positives = 169/360 (46%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALR--DIPIAIGGSRE-RRGVISTANYPARKFGVRSAMP 58 R I+H D++ F+A+VE+ P LR P+A+ G E R G+I N PA+ GV++A Sbjct: 3 RTILHCDLNSFYASVELLSLPELRESGKPVAVCGDPESRHGIILAKNEPAKAMGVKTAET 62 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG- 117 A + CP L LLP D Y++ S + I+ R+T +EP S+DE++LD+T S+H G Sbjct: 63 IWQARQKCPDLVLLPAHRDQYRKYSRIVNAIYDRFTDLVEPFSIDESWLDITGSMHLWGG 122 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 IA IR+T+ E LT S GV+ K AK+ SD KP+ VIT L LP Sbjct: 123 DGKAIADRIRETVKAETGLTVSVGVSFNKVFAKMGSDYKKPDATTVITRENFRQLLWPLP 182 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + + VG +A L G++T GD+ + D L+ GK G L + G + V Sbjct: 183 VTDLLFVGGAAAKVLRGYGVQTIGDLARFDPQALVTILGKQGAALHSYAAGTEHEPVIPA 242 Query: 238 R---LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 R KSVG T ++ + A + L E+ RL + L V ++ + Sbjct: 243 RDLPPPKSVGSGLTFRRNLLGLEDVRAGLSALSDEVAARLR--RHGLKCTTVQVTIRDPN 300 Query: 295 FQQTTQEHVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQME--RQLVL 349 F+ ++ P D+ A + + +R + + L + + QL L Sbjct: 301 FRDICRQKRLPAPTYVSRDIADAALELLLASWNLKLPIRALTVTGQNLVDEADAGEQLDL 360 >UniRef50_Q2L7B2 REV1 n=7 Tax=Sordariomycetes RepID=Q2L7B2_NEUCR Length = 1343 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 109/375 (29%), Positives = 161/375 (42%), Gaps = 36/375 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF AV ++ P RD P + + I++ NYPARKFGV++ M Sbjct: 366 RYIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIASCNYPARKFGVKNGMWMKH 425 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 AL+LCP L +LP F Y+EAS + ++ +S+DEA +DVTD V Sbjct: 426 ALELCPDLKILPYDFPGYEEASRQFYDAILGIGGVVQSVSIDEALIDVTDIVMAEAGSSG 485 Query: 114 ---------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 +A ++R I + S G+ LAK+A KP GQ+ I Sbjct: 486 IGISEGSIWREQEKVDQMASKLRDRIKEQTDCHVSVGIGANILLAKVALRKAKPAGQYQI 545 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P E L L + +PGV AKLE +G++ D+++ L+ G K G LW Sbjct: 546 KPEEALDLLGELNVEDLPGVAHSIGAKLEELGIKFVKDIRQTSKERLISALGPKTGEKLW 605 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 E S+GID +V + +RKSV E + E E + L ELERRL Sbjct: 606 EYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQEEAEEFVRSLSQELERRLLSEGVKGKH 665 Query: 284 ARQGVKLKFDD----------------FQQTTQEHVWPRLNKADLIATARKTWDERRGGR 327 + + D F + + + + A + Sbjct: 666 LTMKIMRRAADAPLDPPKHLGHGKCDTFNK-SVSFGVGTNSGEVIGKEAVAILRSYKFSP 724 Query: 328 G-VRLVGLHVTLLDP 341 G +R +G+ +T L+P Sbjct: 725 GDLRGLGIQMTKLEP 739 >UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5S0_SPHTD Length = 394 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 117/332 (35%), Positives = 173/332 (52%), Gaps = 7/332 (2%) Query: 17 EMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRF 76 E+ P LR P+ +GG RGV++ A+Y AR +GVRSAMP A++LCPH LPG Sbjct: 24 EILRRPELRGKPVIVGGRPGGRGVVAAASYEARAYGVRSAMPIAQAVRLCPHGVFLPGDH 83 Query: 77 DAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQL 136 Y+E S R I R++ +E +S+DEAYLD++ S G A+ I++ + EL L Sbjct: 84 AYYRELSGRFRAILERFSPLVEMVSVDEAYLDLSHSERSVGPPLEAARAIKRQVREELGL 143 Query: 137 TASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMG 196 T S GVA + +AKIASD++KP+G +I P L LP+ ++PG+G S +L+ +G Sbjct: 144 TVSLGVATSRLVAKIASDLDKPDGLRLIEPGAEAVTLAPLPVERMPGIGPKSVERLQRIG 203 Query: 197 LRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR-KSVGVERTMAEDIHH 255 + T G + + L FG+ + R++GID R VN ER KS+G ERT +D+ Sbjct: 204 VTTLGGLARMPAAALRPIFGRRADEVIARARGIDPRPVNPEREPAKSIGRERTFGQDLTD 263 Query: 256 WSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKA--DLI 313 E E + L R L + + VKL++ DF+ ++ PR ++ Sbjct: 264 RHEIERALYHLAERTGRDLRREGLQGRV--VAVKLRYSDFETVGRQRRLPRPTDDHQEIA 321 Query: 314 ATARKTWDERRGGR--GVRLVGLHVTLLDPQM 343 A R VRL+G+ V L P Sbjct: 322 EVAMDLVARLLEERQAPVRLLGVRVAGLGPAA 353 >UniRef50_A3EWL3 Polymerase ATREV1-1105 n=8 Tax=rosids RepID=A3EWL3_ARATH Length = 1105 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 112/363 (30%), Positives = 177/363 (48%), Gaps = 24/363 (6%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTG 60 IIH+D+DCFF +V +++ L D P+A+ S +G IS+ANYPAR +GV++ M Sbjct: 374 TIIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVR 433 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP L ++P F+AY+E ++ +I R+ +++ LS DEA+LDV+D Sbjct: 434 HAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVET--E 491 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 ++A IR I +ASAG+ +A++A+ + KP GQ I+ +V FL LP+ Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGT 551 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239 +PGVG V KL ++TCG ++ L K FG K G +LW S+G+D R V + + Sbjct: 552 LPGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQE 611 Query: 240 RKSVGVERTMAEDIHHWSE----CEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 KS+G E + + ++ L E+ RL + +K + D Sbjct: 612 SKSIGAEVNWGVRFRDQQDVFILVQHFLQCLCKEVSLRLQGCEMIGRTFTLKIKKRKKDA 671 Query: 296 QQTT------------QEHVWPRLNKA--DLIATARKTWDER-RGGRGVRLVGLHVTLLD 340 ++ T + P L ++K + + VR VGL V+ LD Sbjct: 672 EEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVSKLD 731 Query: 341 PQM 343 Sbjct: 732 SAD 734 >UniRef50_UPI00016E76F4 UPI00016E76F4 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E76F4 Length = 1200 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 117/413 (28%), Positives = 183/413 (44%), Gaps = 73/413 (17%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV----------------------- 40 I HVDMDCFF +V +R+ P L+ P+A+ +R V Sbjct: 408 IFHVDMDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKVLHRPGANPQLERHYYQWKQSHTK 467 Query: 41 ----------------------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLL 72 I++ +Y AR+ GVR+ M G A +LCP L + Sbjct: 468 SGETPSQESPESNTSGAGQETAALSMAEIASCSYEARQAGVRNGMFFGKAKQLCPSLQAV 527 Query: 73 PGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTIF 131 P F+AYKE + + E + YT IE LS DE +D + + S +A+ IR I Sbjct: 528 PYDFEAYKEVALTMYETLAGYTHDIEALSCDELLIDSSALLAELCISPEELAKAIRADIK 587 Query: 132 NELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAK 191 + AS G+ LA++A+ KP+GQ + +V F++ LP+ +PGVG V + K Sbjct: 588 EKTGCCASVGMGSNILLARLATRKAKPDGQHFLRSEDVDDFIRDLPVTSLPGVGPVMSRK 647 Query: 192 LEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMA 250 L AMG+R+CGD+Q+ L L K+FG + G+ L+ +G+D+R V E+ RKSV + Sbjct: 648 LVAMGVRSCGDLQQVSLSQLQKKFGPRTGQTLFRFCRGLDDRPVRYEKERKSVSADMNYN 707 Query: 251 EDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKL------------KFD----- 293 +E E + L E+++RL + L R +K+ K+ Sbjct: 708 IRFTTVNEAECFLTNLSMEVQKRLQEA--GLRGRRVTLKVMVRKVGAPQEPAKYGGHGIC 765 Query: 294 DFQQTTQEHVWPRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMER 345 D T + + + K + + +R VG+ V LLD + Sbjct: 766 DNLARTVMLAQSTDHGEVIASAVIKLFHAMNLQVQDLRGVGIQVQLLDGNAHQ 818 >UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3H3_ERYRH Length = 406 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 101/354 (28%), Positives = 176/354 (49%), Gaps = 8/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D+D FA +E+ NP+L D+P+ +GG R G++ N A+ GV++A Sbjct: 4 RYILHCDIDYCFAQIEIMKNPSLADVPMCVGGDESKRHGIVLARNPIAKAKGVKTAETLN 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L ++P FD Y SN +++I+ YT ++E +DEA++D++DS+ G Sbjct: 64 EARRKCPGLVIVPPSFDDYLTISNQVKDIYREYTDKVESFGIDEAWVDISDSLLLFGKPG 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I E+ LT S G++ K AK+ SD+NKP+G ++ + V + + LP+ Sbjct: 124 DIATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDGLTILMESHVKSMIWPLPVQD 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE-RL 239 + VG + L MG+RT GD+ D L GK G +L + G D +VN Sbjct: 184 LLYVGPSTQKSLNKMGIRTIGDLACADENQLHTHIGKMGSLLKSFANGDDTSEVNPHTDP 243 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 KSVG T +D+ E ++ L + R ++ + R + ++ + + + Sbjct: 244 AKSVGNGMTTPQDLVSIEEVRRVLFVLAESVSSRCRNIEKKGSVLR--ICIRNNQLETLS 301 Query: 300 QEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMER-QLVL 349 ++ P ++ + + + +R + + ++ L + QL L Sbjct: 302 RQKKLNQPTNTVDQIVNESLFLIERYWDQKQPLRSITITLSDLVSTTQPIQLSL 355 >UniRef50_C5JS23 DNA damage repair protein Mus42 n=2 Tax=Ajellomyces dermatitidis RepID=C5JS23_AJEDS Length = 1171 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 107/374 (28%), Positives = 165/374 (44%), Gaps = 34/374 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R +P L D P+AI I++ NYPAR FG+++ M Sbjct: 370 RYILHVDFDSFFAAVSIRKHPELVDQPVAIAHGTGPGSEIASCNYPARSFGIKNGMWMKA 429 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD---------- 111 AL++CP+L +LP F AY++AS E+ ++ +S+DEA +D+T Sbjct: 430 ALQMCPNLKVLPYDFAAYEQASRAFYEVILSIDGIVQSVSIDEALVDITGVCLDAGGSDG 489 Query: 112 -------SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ +R ++ S G+ A++A KP GQF + Sbjct: 490 RGISEGSIWREQEKADEIAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQL 549 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ TL + +PGV AKLE +G+ D++ L G K G LW Sbjct: 550 KPDAVLDFIGTLAVKDLPGVAHSLGAKLEELGVTFVKDIRDLSREKLTSSLGPKTGAKLW 609 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + ++GID +V + RKSV E + ++ E ++ L EL RRL + Sbjct: 610 DFARGIDNTEVGVQAPRKSVSAEINWGIRFVNQAQAEEFVQSLCDELHRRLVENLVKGKQ 669 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVWPR-LNKADLI-ATARKTWDERRGGRG 328 + + D + N +D+I A + G Sbjct: 670 LTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVNLGVATNASDIIGREAITILRGFKFSPG 729 Query: 329 -VRLVGLHVTLLDP 341 +R +G+ +T L+P Sbjct: 730 DLRGLGVQMTKLEP 743 >UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q0AWD6_SYNWW Length = 419 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE P +R+ +A+ G R G++ NY A++ G+++ Sbjct: 3 RVILHSDLNNFYASVECLHRPEIRNKAVAVCGDPAARHGIVLAKNYLAKESGIQTGEVIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L ++P + Y + S R I++ YT ++E LDEA+LDVT S+H GS Sbjct: 63 QAQQKCPELVVVPPNYPLYLKFSRLARSIYASYTDQVEAFGLDEAWLDVTGSIHIFGSGI 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A EIR+ I EL ++AS GV+ K AK+ SDM KP+ +I+ LP + Sbjct: 123 EMADEIRERIKLELGVSASVGVSYNKIFAKLGSDMKKPDATTIISKDNFKQTAWPLPASD 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS---E 237 + VG+ + K G+ T GD+ + D ++L R GK+G +LW + G D V + E Sbjct: 183 LLYVGRATCRKFARWGISTIGDIAESDPLVLKARLGKWGEVLWSFANGYDRSPVVAMGEE 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 + KSVG T D+ + + II L + RL + + ++ + Sbjct: 243 SIIKSVGNSITTPRDLENNEDVLLIIYALSESVAARLRE--HGFKCRTVHIHVRDKNLFT 300 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLH-VTLLDPQMERQLVL 349 + P D+ A + +R +G+ L+ QL L Sbjct: 301 FGVQGKLLRPGNISNDIAEKAMALFRSHYSWAHPIRSIGVRGCDLIAADSHEQLSL 356 >UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF6_9FIRM Length = 412 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 101/357 (28%), Positives = 178/357 (49%), Gaps = 12/357 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGM 61 I+HVDM+ F+ + E+ D P L+ P+A+GG + R G+I A+KFGV + P Sbjct: 2 DILHVDMNSFYVSCELIDKPNLKSQPVAVGGDEKLRHGIILAKTPMAKKFGVLTGEPIWQ 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A K CP+L + P ++ Y S ++I+ YT+++EP +DE +LD+T S GS Sbjct: 62 AKKKCPNLLIFPPNYEKYIRISKAAQKIYYSYTNQVEPYGMDECFLDITGSKKLFGSPEK 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA EI++ I EL++T S G++ K AK+ASDM KP+ I + L + + Sbjct: 122 IAFEIKERIKTELKVTVSVGLSFNKVFAKLASDMRKPDYCTFIYKENYKKIVWPLKVQDM 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER--- 238 +G + KL + ++T GD+ + D +L K G G ++ + G+D V Sbjct: 182 IMIGPQTTKKLNKINIKTLGDLAEADPEILRKNLGINGIKIYNWANGMDNTRVKDYYQII 241 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+G T ED+ ++ E A+I++L ++ +RL ++ + L V + ++ Sbjct: 242 PIKSIGRSITCKEDLLNYEEVRAVIQKLCEDISKRL--IENNYLARGVNVGYRKNNLSHE 299 Query: 299 TQEHVW--PRLNKADLIATARKTWDE---RRGGRGVRLVGLHVTLLDPQMER-QLVL 349 + + + P + ++ A A + + + +R + + L E Q+ L Sbjct: 300 SSDVLLDYPSNSTLEISAKAMDVFLKNFTFKDDEKIRALYIRAIKLIQNREAIQIDL 356 >UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42_RHILO Length = 415 Score = 317 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 106/356 (29%), Positives = 164/356 (46%), Gaps = 14/356 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+H D+D F+A+VE +P+LR PIA+GG GV+ A+Y AR FGVR MP A Sbjct: 6 TILHADLDAFYASVEQLLDPSLRGKPIAVGG-----GVVLAASYEARAFGVRGGMPGRKA 60 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP L + G F Y+ + ++ +T +E +S+DEA+ DV H G I Sbjct: 61 RELCPQLIFVGGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTHLFGQPRDI 120 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A IR + EL L S GVA K LAKIAS + KP+G V+ P FL LP++ + Sbjct: 121 ATAIRHRVRAELGLPISIGVARTKHLAKIASQVAKPDGLVVVDPGTELDFLHDLPVSLMW 180 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRK 241 GVG + ++L +G++T G++ + L + G G L + D R + + R Sbjct: 181 GVGPATKSRLAEIGIQTIGELARTHSGALTRLLGPAAGEKLAALAWNRDPRKLETRRRAH 240 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S G + + + + L + RL V+++F D T+ Sbjct: 241 SAGAQSALGQKPAVARVIVPTLLHLADRVASRLRAKARPGR--TVTVRVRFADLSAVTRS 298 Query: 302 HVWPRLNKADLI------ATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 + A + R + + + L+ + V+ L+ E QL L L Sbjct: 299 ITLDQPISATTMLAEIAGDLVRGVLADHPREKTISLLAISVSHLEESAELQLDLPL 354 >UniRef50_B0MAH2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAH2_9FIRM Length = 402 Score = 317 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 179/360 (49%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVE-------MRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGV 53 R I H+D++ + + E +D LR++P IGG RRG++ A+ PA+K G+ Sbjct: 6 RVIFHIDVNSAYLSWEAVYGISVRKDEVDLREVPSIIGGDESKRRGIVLAASIPAKKKGI 65 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 R+A AL CP L + P Y + S + +++ +E S+DEA+LD+T++V Sbjct: 66 RTAETVREALNKCPDLIIRPPCHGMYDKFSKAFLKEALKFSPVLEKFSIDEAFLDMTETV 125 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 + S A ++ I+ +L T + GVAP K LAK+ASD KPN + EVP + Sbjct: 126 GQYKSPYEAACLLKDRIYEKLGFTVNIGVAPNKLLAKMASDFEKPNKVHTLFREEVPNKM 185 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ + VG + KL +G+RT G++ + +L G K G ++E + GID Sbjct: 186 WPLPVENLLFVGPATKKKLHNLGIRTIGELAHINPELLKSHIGNKHGIQIYEYANGIDRA 245 Query: 233 DVNSERL-RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 V +++ K G T+ DI E + ++ L + RL + + + V++K Sbjct: 246 PVEAQQADSKGYGNSITLPSDIDSLEEADTVVLSLAETVASRLRADR--VKASCITVEIK 303 Query: 292 FDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F++++ + P +++ A++ + E+ G VRL+G+ + + + Q+ Sbjct: 304 DCQFRRSSHQKKLFAPTDITNEIVQAAKELYREKFRGTSVRLIGVRASDITKEEFAQMDF 363 >UniRef50_UPI0001C32444 DNA-directed DNA polymerase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32444 Length = 370 Score = 317 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 112/365 (30%), Positives = 172/365 (47%), Gaps = 22/365 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D D F+A+VE+ P LRD + + R V++TA+Y AR++GV SAMP Sbjct: 13 RVIAHLDCDAFYASVELLRRPDLRDKAVIVAHD-GPRSVVTTASYAARRYGVGSAMPLSR 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH LLP F++Y+ S + EI R++ L LDEAY D+T Sbjct: 72 AKRLCPHAILLPPDFESYRRVSRALWEIVGGRLGRLQHLGLDEAYADLTGV----EKPVR 127 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + +E+ + + E +T S G+ P + +AKI SD+ KP G + E + Sbjct: 128 VLRELVEQVRAETGITVSVGLGPSRLIAKICSDLGKPAGFVAMGREEAAQRFAGHSPKLL 187 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PG+G S +L MG+ T G +Q L +RFG + GR L R+ D +V + R+ Sbjct: 188 PGIGPKSVERLREMGIETIGQLQATPEERLTERFGARHGRDLLRRAHFHDSSEVETSRVL 247 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS ERT ED+ ++ E I+ RL L L + + +K++ DD+ T+ Sbjct: 248 KSRSNERTFDEDVTSLTQLEEILRRLAQGLCEGLQ--RREKRGRTIAIKVRLDDWTTVTR 305 Query: 301 EHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME------------RQ 346 + A + A + R VRL+G+ + + + Q Sbjct: 306 ARTVDAHTNDTALVTDVALELLRAYAPPRPVRLLGVRLASFEDEEGAKAGSGGRAPPPDQ 365 Query: 347 LVLGL 351 L L L Sbjct: 366 LALPL 370 >UniRef50_C0S277 DNA polymerase IV n=5 Tax=Onygenales RepID=C0S277_PARBP Length = 1161 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 106/380 (27%), Positives = 169/380 (44%), Gaps = 34/380 (8%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R +P L D P+AI I++ NYPAR FG+++ M Sbjct: 366 RYIMHVDFDSFFAAVSIRKHPELADQPVAIAHGTGPGSEIASCNYPARSFGIKNGMWMKG 425 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD---------- 111 AL++CP+L +LP F AY+EAS + E+ ++ +S+DEA +D+T+ Sbjct: 426 ALQMCPNLKVLPYDFAAYEEASRNFYEVILAIDGIVQSVSIDEALVDITNICLDAGGSDG 485 Query: 112 -------SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ++R ++ + S G+ A++A KP GQF + Sbjct: 486 IGISEGSIYREQAKADEIAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQL 545 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ L + +PGV KLE +G+ D+++ L G K G LW Sbjct: 546 KPDAVQDFIGELTVKDLPGVAHSLGGKLEELGVVFVKDIRELSKEKLTSSLGPKTGAKLW 605 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 ++GID +V + RKSV E + ++ E ++ L EL RRL + Sbjct: 606 NYARGIDNTEVGIQVPRKSVSAEISWGIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQ 665 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVWPR-LNKADLI-ATARKTWDERRGGRG 328 + + D + N +D+I A + G Sbjct: 666 LTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVALGVATNASDIIGREAISILRGFKFSPG 725 Query: 329 -VRLVGLHVTLLDPQMERQL 347 +R +G+ +T L+P + + Sbjct: 726 DLRGLGVQMTKLEPVKQSNV 745 >UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBQ9_9FIRM Length = 399 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 176/349 (50%), Gaps = 9/349 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPT 59 +R I+H DM+ +A++E + NP L++ +A+ G R R G+I + A+ GV++ Sbjct: 2 LRTILHSDMNSCYASIEAKLNPKLKNKAMAVCGDPRNRHGIILAKSQEAKIMGVKTGEAI 61 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A CP+L L+P ++ Y E S R+I+ YT+R+EP LDE +LDV++S+ GS Sbjct: 62 WQAKIKCPNLILVPPHYEKYLEFSRKARKIYYSYTNRVEPFGLDECWLDVSESLKLFGSG 121 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA +IR+ + EL +T S GV+ K AK+ SD+ KP+ +I + L ++ Sbjct: 122 EEIANQIRERMKKELGITVSVGVSFNKVFAKLGSDLKKPDATTLIKKENFKEIVWPLDIS 181 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 I G+GK + KL +G+ + GD+ K D + G G LW+ + G+D+R V Sbjct: 182 SIIGIGKATKRKLNGIGIYSLGDLAKTDSDAIRGILGINGLYLWQYANGLDDRPVKDYSY 241 Query: 240 R---KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD-F 295 R K++G T+ ED++ E I + L + +RL + +L + ++ ++ F Sbjct: 242 REVIKTIGNSSTLVEDLYTNEEVYNIFQILSLNVSKRLREA--NLSSMGVNIFVRDNNLF 299 Query: 296 QQTTQEHV-WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQ 342 Q + P + L A + ++ +R +G+ L Sbjct: 300 SYEFQSPINNPTQSSIILSEKAIDLFKKKYKWNFPIRALGIRAINLVDD 348 >UniRef50_Q8TIW3 DNA polymerase IV n=4 Tax=Methanosarcinaceae RepID=DPO4_METAC Length = 366 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 114/359 (31%), Positives = 178/359 (49%), Gaps = 17/359 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIG---GSRERRGVISTANYPARKFGVRSAMP 58 R IIHVDMD F+AA+E R+ P L + + G E G +ST NY AR+FG+RS MP Sbjct: 4 RVIIHVDMDYFYAAIEEREKPELLGKAVVVCMLSGRSELSGSVSTCNYIAREFGIRSGMP 63 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTS------RIEPLSLDEAYLDVT-D 111 A KL P LP R + Y S+ I EI Y E +S+DEA+L++T Sbjct: 64 CSRAKKLNPEAVFLPVRKEFYTSVSDRIMEILRSYADPGENGDSFEQISVDEAFLEITYR 123 Query: 112 SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA 171 + A + +I++ I + LT S G+ P K +AK+AS KP+G V++P A Sbjct: 124 AGGDFNLAFELGMQIKKEIKEKENLTCSIGIGPNKLIAKMASSAKKPDGITVVSPENQEA 183 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGID 230 FL L ++K+ G+G V+A KL+ M + T D+ + D++ L+ FGK G L + + GID Sbjct: 184 FLWPLKVSKLWGIGDVTAKKLQEMDIVTVKDLAEHDVIELISTFGKSRGTWLKQAASGID 243 Query: 231 ERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKL 290 + + + +G T+ ED +++E+L ++ +L +L V + Sbjct: 244 DSPLKEREGSEQIGRIATLPEDTLDQELILSLLEKLAGDVIEKLDS--RELSFRVVTVTV 301 Query: 291 KFDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRG--VRLVGLHVTLLDPQMER 345 +F+ T+ P +K L+ AR+ E R VG+ V L + + Sbjct: 302 INSNFRTYTKSRTLNHPVSSKETLLEAAREILSEFLSESKTEFRRVGVRVGGLQKKKGQ 360 >UniRef50_C2FXW7 Possible DNA-directed DNA polymerase n=2 Tax=Sphingobacterium spiritivorum RepID=C2FXW7_9SPHI Length = 393 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 179/350 (51%), Gaps = 7/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R + H+D+D FF +VE N P+ +GG + R V+S +Y R +GV SAMP + Sbjct: 8 RFVAHLDLDTFFVSVERLKNTQFVGKPLIVGGMSD-RAVVSACSYETRLYGVHSAMPMKL 66 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP ++ G D+Y S + ++ Y +E S+DE Y D+T G + Sbjct: 67 ALRLCPQAIVIRGDMDSYSYYSRMVTDVVREYVPVMEKASIDEFYADLTGVDRFFGCSQF 126 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A E++Q + E+ L S +A K ++K+A++ KP+G+ + +L L + ++ Sbjct: 127 MA-ELKQKVRKEVGLPISYALASNKLISKVATEDAKPDGKREVEHGLEKDYLAPLRIERM 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+G ++ L MG+RT + + + M+ GK G L ++ GID + +K Sbjct: 186 PGIGNKTSGLLHQMGVRTIKVLSEIPVPMMQNLLGKNGVDLSRKANGIDFTPIVPYSEQK 245 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +D ++ + R+ + +L + + L +KL++ +F +++ Sbjct: 246 SIGTEETFEQDTIDIYYLKSELIRMTERMTFQLRQHRR--LTGCITIKLRYSNFDTVSKQ 303 Query: 302 HVWP-RLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVL 349 V P + A L++ A++ + + R VRL+G+ + L Q + Q+ L Sbjct: 304 MVIPYTASDAVLLSKAKELFAKLYDKRLLVRLLGVRFSHLV-QGQYQIDL 352 >UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAM5_9FIRM Length = 425 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 175/360 (48%), Gaps = 16/360 (4%) Query: 3 KIIHVDMDCFFAAVEMRDN-------PALRDIPIAIGGSRE-RRGVISTANYPARKFGVR 54 I HVD++ F + D LRD+P AIGG + R G+I+ + PA+++G+ Sbjct: 5 IIFHVDVNSAFLSWTASDRMAKGIDKVDLRDLPSAIGGDPKTRHGIITAKSIPAKRYGIV 64 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + P AL+ CP L L+PG + Y S + ++ +Y ++P S+DEA+ D+T + Sbjct: 65 TGEPVSQALRKCPSLILVPGDYSLYARQSQALMDLLRKYAPAVDPFSIDEAFCDMTGTAS 124 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 +G L A +++ I +L T + G++ LAK+ASD KP+ + P E+P + Sbjct: 125 LYGDPVLFAHKLKDEIRRDLGFTVNVGISSNHLLAKMASDFTKPDRVHTLWPREIPRKMW 184 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP A + VG+ +A KL+++G+ T GD+ +L+ FGK G + + G + D+ Sbjct: 185 PLPAADLLFVGESTAQKLKSLGILTIGDLAGTPEDLLVSHFGKHGSQMLAYANGTEPSDL 244 Query: 235 NSERLRKS--VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 S RKS E T++ D+ E I+ L L R+ + + GV K Sbjct: 245 TSRH-RKSRGFSNEITISHDLVDREEARLILLSLCETLAARIRLQGDKIRL--VGVYYKD 301 Query: 293 DDFQQTTQEHVWPR--LNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER-QLVL 349 F +++ R + + TA E GR +RL+G+ + +D Q+ L Sbjct: 302 SSFVSASRQTRLNRSSSSTQTIYETALSLLHELWDGRPLRLLGVRGSEIDKDSGSYQMDL 361 >UniRef50_B8GPZ5 DNA-directed DNA polymerase n=2 Tax=Gammaproteobacteria RepID=B8GPZ5_THISH Length = 414 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 168/352 (47%), Gaps = 10/352 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+ VDM+ FFA++E D+P LR P+ I + + I T++Y AR GVR+ M Sbjct: 7 RAIVLVDMNAFFASIEQLDHPELRGRPVGIT-NGQTGTCIITSSYEARAHGVRTGMRLKE 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + +P R + Y S I T +E S+DEA+LDVT G + Sbjct: 66 ARQLCPDILQIPARPERYARVSTDIMTALESVTPDLEVFSVDEAFLDVTHCQRLLGPPEV 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ ++ T+ L S G++ K AK A+ +KP+G VI P E A L +P+ ++ Sbjct: 126 IARRVKDTVREASGLPCSVGMSGDKTTAKWAAKQHKPDGLTVIPPWEAAARLAPVPVTEL 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE-RLR 240 G+ LE G+ TCGD+ + + L +RFG GR +W +QG D V + Sbjct: 186 CGIAGGIGGYLEQRGVYTCGDMAQLPVSELARRFGNLGRRIWLMAQGRDPTPVETRIAPP 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT-- 298 +S+G + M + +E + ++ RL + DLL R + L+ D+ Sbjct: 246 RSLGHGKVMPPGTRERAVILTYLEHMAFKVGTRLR--RHDLLALRFFIGLR-ADYGWIGG 302 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP-QMERQLVL 349 T + L A R+ +E G GV + +T L+P QL L Sbjct: 303 TYRTAVATDDSRQLNALCRRMLNEHWSGEGVSQ--VQITALEPCPAAGQLEL 352 >UniRef50_C4LI62 DNA polymerase IV n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI62_CORK4 Length = 512 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 115/355 (32%), Positives = 163/355 (45%), Gaps = 8/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H+DMD FFA+ E P LR P+ G RGV++ A+Y AR FGV SAMP Sbjct: 25 RWVLHIDMDAFFASCEQLTRPTLRGRPVL-VGGVSGRGVVAGASYEARVFGVHSAMPMMR 83 Query: 62 ALKLCPHL-TLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA- 119 A +L + + RFD YK AS + EI IE LS+DEA+++ + Sbjct: 84 ARRLVGYAGITVRPRFDVYKTASRRVMEILREEAGLIEQLSVDEAFMEPDELSGATPDGV 143 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A +R+ I E L +S G K AKI S + KP+G FVI + A L LP+ Sbjct: 144 RKWAGHLRKRIREETGLPSSVGAGAGKQFAKIGSGLAKPDGTFVIPVQDQHAILDPLPVR 203 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSER 238 K+ G+G V+ AKL +G+RT + + GK G LW +QG D R V Sbjct: 204 KLWGIGPVAEAKLADIGVRTIEQFARMSRTDVEMALGKTNGPALWLLAQGHDPRPVAPRA 263 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 K V E T ++D+ + I + RRL VKLK DF++ Sbjct: 264 EAKQVSSESTFSDDVTTLDGVDEGIRAALTKAHRRLMNDGRG--ARTVTVKLKRADFERH 321 Query: 299 TQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ P + L A + + VRLVG+ ++ L+ + L L Sbjct: 322 TRSETLPFSTTDWDVLYRVASRLAADPAVFGAVRLVGVSLSGLESARQEALFPDL 376 >UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bifidobacteriaceae RepID=B7GNF3_BIFLI Length = 448 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 109/365 (29%), Positives = 170/365 (46%), Gaps = 20/365 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++H+DMD F+A++E+ NP L+ P+ IG R V+S A+Y AR++G+ SAMP A Sbjct: 46 TVLHIDMDAFYASLEVARNPGLKGKPVIIGTGP--RAVVSAASYEARRYGINSAMPAARA 103 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIR-EIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 +LCP+ LP Y+ S+ I E+F T R E +S+DE Y+DV+ ++ G + Sbjct: 104 HQLCPNGVFLPVDMAYYRMMSHRIMHEVFLTVTDRFEQVSVDEGYMDVSTALLEWGRPSA 163 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I IR + +T S G+A K +AK+AS KP+G +I A F+Q +PL I Sbjct: 164 IGAWIRAQVAERFHVTCSVGIACNKLVAKMASTNAKPDGMLLIPAARSAEFVQMMPLRGI 223 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK--FGRILWERSQGIDERDVNSERL 239 PG+G +L A G+ + ++ + D L + G R LW S G+D R + + R Sbjct: 224 PGIGPSLEKRLNAWGVHSVAELAQLDETALTRATGSPAAARGLWAASHGLDSRKITTVRE 283 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 KS+G E T+AED ++ E+ L + L+ VKL+F D T Sbjct: 284 EKSIGSEETLAEDTRDMRVVCGLLRSACDEVASTLR--RKGLVARTLTVKLRFADLSYQT 341 Query: 300 QEHVW--PRLNKADLIATARKTWD-----------ERRGGRGVRLVGLHVTLLDPQMERQ 346 + P L + + +RL G+ + L Sbjct: 342 RSFTMERPTDTAGVLYPECVRQLKVMLGLPASAESATPLPKTIRLAGMSTSSLSEAAATA 401 Query: 347 LVLGL 351 + L Sbjct: 402 VQPSL 406 >UniRef50_D2A3T9 Putative uncharacterized protein GLEAN_14950 n=1 Tax=Tribolium castaneum RepID=D2A3T9_TRICA Length = 825 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 109/399 (27%), Positives = 176/399 (44%), Gaps = 51/399 (12%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGG----------------------------- 33 ++H+DMDCFF +V +R P LR +P+A+ Sbjct: 209 VVMHIDMDCFFVSVGLRTRPELRGLPVAVTHARRAQLNPNKEREETVTLNMDRMPEGVEL 268 Query: 34 ----SRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREI 89 R +++ +Y ARK GV++ M G A KLCP + +P F+ YKE S + + Sbjct: 269 RMIDGRSSMSEVASCSYEARKCGVKNGMFLGAAAKLCPQIKTIPYDFEGYKEVSMVLYKT 328 Query: 90 FSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFL 148 + YT IE +S DE Y++V+D + + S A IR I S G + Sbjct: 329 LASYTLNIEAVSCDEMYVEVSDLLKSYDLSVEDWANHIRDEIKTATGCPCSTGFGSNRLQ 388 Query: 149 AKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDL 208 A++A+ KP+G + + P +V ++L + LA +PGVG + +KL+++GL TCGDVQ L Sbjct: 389 ARLATKKAKPDGSYYLKPEDVESYLAEIALADLPGVGYATLSKLKSLGLETCGDVQVASL 448 Query: 209 VMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLY 267 +L + G K G L E+++GID + +N RKSV E +EC +E L Sbjct: 449 GVLQRELGAKMGETLLEQAKGIDRKPLNYTHERKSVSAEINYGIRFKTINECYNFLESLG 508 Query: 268 PELERRLAKVKPDLLIARQGVKLKFDD-------F------QQTTQEHVWPRLNKAD--L 312 E+ RL ++K + ++ D F ++ L Sbjct: 509 NEVWSRLNEIKMRAKTVTLKLMIRAADAPLETAKFLGHGLCDSVSKSQTLAHHISDVKIL 568 Query: 313 IATARKTWDERRGGRG-VRLVGLHVTLLDPQMERQLVLG 350 R +D+ +R +G+ +T L+ L Sbjct: 569 HREVRTLYDKMNVNYAELRGLGVQLTKLEKLAPINPTLS 607 >UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus RepID=C7RFL5_ANAPD Length = 413 Score = 313 bits (802), Expect = 8e-84, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 181/349 (51%), Gaps = 11/349 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 + I+H DM+ +A++E + NP L+ IP+A+ G+ + R G+I + A++ GV++ Sbjct: 3 KVILHSDMNACYASIEQKLNPKLKGIPMAVAGNPKNRNGIILAKSQEAKEAGVKTGEALW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP LT++P +D Y + S R+I+ YT+++EP LDE +LDVT S H G+ Sbjct: 63 QAFAKCPDLTIVPPHYDEYLKHSKLARKIYYEYTNQVEPFGLDECFLDVTGSAHLFGTGE 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA +IR+ + E+ +T S GV+ K AK+ SDM KP+ +I + LP+ + Sbjct: 123 EIANKIRERMKEEVGITVSVGVSFCKIFAKLGSDMKKPDAVTIIGEDNFKEIVWPLPVRE 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE--- 237 + GVG+ + KL +G+ T G++ D ++ G G LWE + G+D R V+ Sbjct: 183 MVGVGRATERKLNGIGIFTLGELANTDPDLIRNLLGINGVYLWEYANGLDIRPVHDRDHK 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 K++G T +D+ + E +++ L + +RL + + + ++ ++ Q Sbjct: 243 EPVKTIGNSSTCRKDLVNNREVFNVLQELSFSVSKRLRQAGLEAF--GVEIFVRNNELQS 300 Query: 298 TTQEHVWPRLNKADLIATARKTWD----ERRGGRGVRLVGLHVTLLDPQ 342 + +++ ++ AR+ +D + + VR VG+ L + Sbjct: 301 YNFQKPIKLASQSSIV-LAREGFDLFKEKYKWDFPVRAVGIRAIKLRKE 348 >UniRef50_Q03R40 Nucleotidyltransferase/DNA polymerase for DNA repair n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03R40_LACBA Length = 371 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 127/361 (35%), Positives = 179/361 (49%), Gaps = 16/361 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 RKIIHVDMD F+A++E RD+PA + P+ I + RGV++TANY AR+ GV SAM Sbjct: 9 RKIIHVDMDAFYASIEERDHPAFKQHPLIIAQDPRKTGGRGVVATANYAARQLGVHSAMN 68 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 ALKL P P F Y++ S+ I EIF YT +IEP++ DEAYLDVT++ H S Sbjct: 69 ANEALKLAPQAIFQPPNFPLYRQISDQIHEIFHEYTDKIEPVAFDEAYLDVTENKHHLHS 128 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A EI+ IF + LT S G++ KFLAK ASD KP G VI P + FL LP+ Sbjct: 129 AVQVAHEIQVEIFEKTHLTCSTGISYSKFLAKEASDFRKPVGVSVILPEDAHDFLMALPI 188 Query: 179 AKIPGVGKVSAAKLEAMG----LRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 + GVGK + K+ +G TC Q M L S+ + + Sbjct: 189 ERFRGVGKKTVPKMHELGNSYLEPTCIIGQSWPSFMSLVNL---AMFCISGSEELTSGRL 245 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +R RKS+G ERT + E E ++RL + + + + +KL+ Sbjct: 246 PYQRERKSIGKERTYGPPLTTLGEVENQLQRLAEMVAATVQEKQRHG--KTLVLKLRTSA 303 Query: 295 FQQTTQEHVWP---RLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQLVLG 350 F+ T+ + + A + G VRL+G+ +T L Q + L Sbjct: 304 FKTLTKRYTQADFIANDAQTYYDLALDLYQSVAGENEQVRLLGITITGLAAQTFENVRLP 363 Query: 351 L 351 L Sbjct: 364 L 364 >UniRef50_UPI000186DDA3 terminal deoxycytidyl transferase rev1, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DDA3 Length = 752 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 110/394 (27%), Positives = 175/394 (44%), Gaps = 56/394 (14%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV---------------------- 40 +H+DMDCFF +V +R+ P L+ P+A+ S+ G Sbjct: 212 IYMHIDMDCFFVSVALRNYPHLKGQPVAVTHSKINFGANNSLIETKLNLAVENLDSLKLK 271 Query: 41 ----------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASN 84 I++ +Y ARK GV + M G ALKLCP+L + F YKE S Sbjct: 272 SDEGVNQESKAFSMSEIASCSYEARKAGVCNGMYLGSALKLCPNLKTISYDFKGYKEVSF 331 Query: 85 HIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGSATLIAQEIRQTIFNELQLTASAGVA 143 + + YT IEP+S DE Y+D T + A +RQ I + + T+S G++ Sbjct: 332 MLYNTVAEYTLDIEPVSCDELYIDCTSVLSQIKINPIKFANILRQEIEEKTKCTSSVGIS 391 Query: 144 PVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV 203 K LA++A+ KPNG F +TP +V F++ + + +PG+G+ L+ + + TC D+ Sbjct: 392 ENKLLARLATKKAKPNGVFFLTPEKVEEFIKKVSIYDVPGIGRNIGGILKKLSVETCEDL 451 Query: 204 QKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAI 262 Q L L+K G K G+ L++ +GID+R +N RKSV E + E E Sbjct: 452 QNFSLSFLMKTLGSKIGKNLYDHCRGIDDRKINCNFERKSVSAEINYGIRFNDNEETEIF 511 Query: 263 IERLYPELERRLAKVKPDLLIARQGVKLKFDDF-------------QQTTQEHVWPRL-N 308 ++ L E+ +RL +K + + D ++ P+ N Sbjct: 512 LKELSQEVSKRLVNIKMAGKNITLKIMFRAKDAPIEAAKYLGHGLCDVISRSVTLPQASN 571 Query: 309 KADLIATARKTWDERRGGRG--VRLVGLHVTLLD 340 ++IA +R +G+HV LD Sbjct: 572 DENIIANNVINLYHLLNIPPNELRGIGIHVNKLD 605 >UniRef50_D1HMR5 Whole genome shotgun sequence of line PN40024, scaffold_91.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HMR5_VITVI Length = 704 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 124/354 (35%), Positives = 183/354 (51%), Gaps = 16/354 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R +HVDMD F+AAVE DNP+LR P+A+GG +ISTANY ARKFGVR+AMP + Sbjct: 105 RIWLHVDMDAFYAAVETLDNPSLRGRPMAVGGM----SMISTANYEARKFGVRAAMPGFI 160 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SAT 120 A KLCP L +P F Y S+ R++F +Y SLDEAYLD+T+ + ++ Sbjct: 161 ARKLCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNERDLTSG 220 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA--EVPAFLQTLPL 178 IA+E+R ++ LT SAGVAP + LAK+ SD+NKPNGQFV+ V F+ +LP+ Sbjct: 221 EIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPI 280 Query: 179 AKIPGVGKVSAAKLEA-MGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNS 236 KI G+GKV+ L G+ TC ++ + L F + G+ + D Sbjct: 281 RKIGGIGKVTEHILSGVFGINTCEEMLQKG-GFLCALFSRSSADFFLSVGLGLGKTDTPQ 339 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R RKS+ ERT + + + L L + K L +KLK F+ Sbjct: 340 VRFRKSISNERTFSA-TDDTALLYQKLAELSEMLSIDMQ--KEGLSGRTLTLKLKTASFE 396 Query: 297 QTTQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLV 348 ++ + ++ D++ A K + +RL+GL ++ + + L Sbjct: 397 VRSRAVTMQKYICSREDILNHALKLLNAELP-LSLRLIGLRISHFNEDKDGHLS 449 >UniRef50_UPI0001B7B957 DinB1 protein n=3 Tax=Euteleostomi RepID=UPI0001B7B957 Length = 793 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 121/375 (32%), Positives = 188/375 (50%), Gaps = 42/375 (11%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD F+AAVEMRDNP L++ PIA+G +++T+NY AR+FGVR+AMP +A Sbjct: 101 TIVHVDMDAFYAAVEMRDNPELKEKPIAVGSM----SMLATSNYHARRFGVRAAMPGFIA 156 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP L ++P FD Y+ S ++EI + Y +SLDEAYL++T + Sbjct: 157 KRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQ----ERQG 212 Query: 123 AQEIRQTIFNELQLTASAG----------------------VAPVKFLAKIASDMNKPNG 160 E ++ F ++ G +AP LAK+ SD NKPNG Sbjct: 213 WPEDKRRYFIKMGNCRKIGILTLAMTTGNFHLLRLAQPQGCIAPNTMLAKVCSDKNKPNG 272 Query: 161 QFVITP--AEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF 218 Q+ I P + V F++ LP+ K+ G+GKV+ L A+G+ TC ++ + ++ L Sbjct: 273 QYQIVPSRSAVMDFIKDLPIRKVSGIGKVTEKMLLALGIVTCTELYQQRALLSLLFSESS 332 Query: 219 GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 + G+ D+ + RKS+ VERT +E I+ E ++ + L EL L K Sbjct: 333 WHYFLHVALGLGSTDLARDGERKSMSVERTFSE-INKTEEQYSLCQELCTELAHDLQ--K 389 Query: 279 PDLLIARQGVKLKFDDFQQTTQEHVWPRL--NKADLIATARKTWD-ERRGGRG----VRL 331 L +KLK DF+ T+ P D+ A A++ E G +RL Sbjct: 390 EGLKGRTVTIKLKNVDFEVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRL 449 Query: 332 VGLHVTLLDPQMERQ 346 +G+ ++ +R+ Sbjct: 450 MGVRMSTFSNDDDRK 464 >UniRef50_A5EBX2 DNA polymerase IV (Pol IV 3) n=2 Tax=Bradyrhizobiaceae RepID=A5EBX2_BRASB Length = 330 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 125/353 (35%), Positives = 176/353 (49%), Gaps = 53/353 (15%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE RDNP LR P+A+GGS+E RGV++ A+Y AR FGVRSAM + Sbjct: 26 RKIIHIDMDAFYASVEQRDNPGLRGKPVAVGGSKE-RGVVAAASYEARAFGVRSAMRSVT 84 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + + AT Sbjct: 85 AKRNMQDI-----------------------------------------------PVATD 97 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA IR I E LTASAG++ KFLAK+ASD KPNGQFVITP PAF++ LP+ K Sbjct: 98 IATAIRAKILRETGLTASAGISYNKFLAKLASDHRKPNGQFVITPKMGPAFVEQLPVGKF 157 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + AK+ +G+ T D++ + FGK G + S+G+DER V + R+RK Sbjct: 158 HGIGPATNAKMNRLGIFTGMDMRNQTRGFMNAHFGKAGAYYYWVSRGVDERPVRANRIRK 217 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SVG E T + D+ ++ A +E L ++ +K+KF DFQ T+ Sbjct: 218 SVGAENTFSGDLTGFAALVAELEPLIDKVWGHCESTGN--FGRTVTLKVKFSDFQIITRS 275 Query: 302 HVW--PRLNKADLIATARKTWD-ERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P ++ DL + E + VRL+G+ ++ L + E + L L Sbjct: 276 RSVASPISSRQDLNRLTLGLLECEMPIPKSVRLLGVSLSSLQAEAEGEPQLDL 328 >UniRef50_A2QTI4 Contig An09c0050, complete genome n=9 Tax=Eurotiomycetidae RepID=A2QTI4_ASPNC Length = 1165 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 111/389 (28%), Positives = 161/389 (41%), Gaps = 40/389 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD DCFFAAV P L+ P+A+ I++ NY AR G+++ M Sbjct: 372 RYIMHVDFDCFFAAVSTLKRPELQGKPVAVAHGTGSGSEIASCNYEARAHGIKNGMWMKG 431 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT----------- 110 AL+ CP L ++P F AY+EAS ++ +S+DEA +D+T Sbjct: 432 ALQTCPELKVVPYDFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDITTQCLEAGGSDG 491 Query: 111 ------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IA E+R T+ E S G+ LAK+A KP GQF + Sbjct: 492 RGISEGSLYREQARADEIADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQL 551 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ L + +PGVG KLE +G++ DV+ L G K G +W Sbjct: 552 KPDAVLDFIGNLTVQDLPGVGYSLGTKLEDLGVKLVKDVRDLTRDRLTTSLGPKTGVKIW 611 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 E ++GID +V +E LRKSV E + ++ E + L EL RRL + Sbjct: 612 EYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQTQAEDFVRSLCQELHRRLVENLVKGQQ 671 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVWPR-LNKADLI-ATARKTWDERRGGRG 328 V + D + V + AD++ A G Sbjct: 672 LTLKVMRRALDAPLEPVKHLGHGKCDVFNKSVVLGVATDAADILGKEAVAMLRSMNLSPG 731 Query: 329 -VRLVGLHVTLL------DPQMERQLVLG 350 +R +G+ +T L P Q L Sbjct: 732 DLRGLGVQMTKLQHLQTSSPSKSGQRQLN 760 >UniRef50_UPI0000D862D7 hypothetical protein CIMG_01093 n=1 Tax=Coccidioides immitis RS RepID=UPI0000D862D7 Length = 1021 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 146/305 (47%), Gaps = 20/305 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R NP L D P+AI I++ NYPAR FG+++ M Sbjct: 348 RYILHVDFDSFFAAVSIRKNPELADKPVAIAHGTGAGSEIASCNYPARAFGIQNGMWMQG 407 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS--------- 112 AL++CP L +LP F AY++AS E ++ +S+DEA +D+T Sbjct: 408 ALQMCPDLKVLPYDFAAYEDASRKFYEAILDIDGIVQSVSIDEALVDITKLCLEAGGSEG 467 Query: 113 --------VHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ +R ++ + S G+ AK+A KP GQF + Sbjct: 468 KGISEGSIWKEQAKADEIAQTLRDSVKQKTGCDVSVGIGGNILQAKLALRKAKPAGQFQL 527 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ L + ++PGV AKLE +G++ D+++ L G K G LW Sbjct: 528 KPEVVLEFIGELTVQQLPGVAYSLGAKLEELGVKFVKDIRELSRERLTSNLGPKTGAKLW 587 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAK--VKPDL 281 + ++GID DV RKSV E ++ E ++ L EL RRL + VK Sbjct: 588 DYARGIDNADVGDVAPRKSVSAEINWGIRFVTQAQVEEFVQSLCDELHRRLMENGVKGKQ 647 Query: 282 LIARQ 286 L R Sbjct: 648 LTMRI 652 >UniRef50_D2R9L6 ImpB/MucB/SamB family protein n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9L6_GARVA Length = 409 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 107/362 (29%), Positives = 167/362 (46%), Gaps = 23/362 (6%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD F+A++E+ +P L+ P+ IG R V+S A+Y AR +GV SAMP A LCP Sbjct: 1 MDAFYASLEVARHPELKGKPLIIGTGN--RAVVSAASYEARAYGVNSAMPVVKARNLCPQ 58 Query: 69 LTLLPGRFDAYKEASNHIRE-IFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIR 127 LP Y S I E IF T+++E +S+DE Y++V ++ S I +R Sbjct: 59 GIFLPVDIPYYSSVSKSIFENIFLHITNQVEKVSVDECYMNVKSALLQWKSPVNIGTWVR 118 Query: 128 QTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKV 187 + +F + +T S G+A K +AK+AS KPNG +I F+ +PL IPG+G Sbjct: 119 KEVFEKYHITCSVGIASNKLIAKMASTNAKPNGMLLIPQKCNEDFVSIMPLRAIPGIGSS 178 Query: 188 SAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF--GRILWERSQGIDERDVNSERLRKSVGV 245 KLE GL T ++ D L + G R++++ +GIDER V + KS+G Sbjct: 179 LIHKLEDWGLSTVASLKNVDEATLTRITGSQILARMIYQSVRGIDERTVTAHAPEKSIGT 238 Query: 246 ERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW- 304 ERT+ D + + + ++++ E+ ++L K L+ +KL+F D T+ Sbjct: 239 ERTLDTDTTNENAVKQLLQQCCSEVTQQLRNRK--LMARTITLKLRFGDLHYVTRSSTLQ 296 Query: 305 -PRLNKADLIATARKTWDERRGG--------------RGVRLVGLHVTLLDPQMERQLVL 349 + + VRL G+ L P + L Sbjct: 297 NATDSTHEFYEHVVVLLSRANPTVHNYILGGNNTKLLSPVRLAGVTANNLVPANKVSLQP 356 Query: 350 GL 351 L Sbjct: 357 SL 358 >UniRef50_Q5Q9H0 Polymerase kappa isoform 9 n=3 Tax=Murinae RepID=Q5Q9H0_MOUSE Length = 467 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 117/337 (34%), Positives = 178/337 (52%), Gaps = 20/337 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD F+AAVEMRDNP L+D PIA+G +++T+NY AR+FGVR+AMP +A Sbjct: 101 TIVHVDMDAFYAAVEMRDNPELKDKPIAVGSM----SMLATSNYHARRFGVRAAMPGFIA 156 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP L ++P FD Y+ S ++EI + Y +SLDEAYL++T + Sbjct: 157 KRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQ----ERQD 212 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP--AEVPAFLQTLPLAK 180 E ++ F ++ G+AP LAK+ SD NKPNGQ+ I P + V F++ LP+ K Sbjct: 213 WPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPIRK 272 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERL 239 + G+GKV+ L A+G+ TC ++ + +L F + + G+ D+ + Sbjct: 273 VSGIGKVTEKMLMALGIVTCTELYQ-QRALLSLLFSETSWHYFLHIALGLGSTDLARDGE 331 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 RKS+ VERT +E I E ++ + L EL L K L +KLK +F+ T Sbjct: 332 RKSMSVERTFSE-ISKTEEQYSLCQELCAELAHDLQ--KEGLKGRTVTIKLKNVNFEVKT 388 Query: 300 QEHVWPRL--NKADLIATARKTWDERRG---GRGVRL 331 + P ++ A A++ +RL Sbjct: 389 RASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRL 425 >UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_9FIRM Length = 411 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 106/351 (30%), Positives = 171/351 (48%), Gaps = 14/351 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H DM+ F+A+VE NP L++ P+A+ GS ER G++ NY A+ FGV + Sbjct: 3 RVILHCDMNNFYASVECMLNPELKNKPVAVCGSVEERHGIVLAKNYAAKAFGVSTGEAIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + C L ++ ++ Y + S REI+ RYT +IEP +DE +LDVT S C G+ Sbjct: 63 QAKQKCQDLVIVEPHYEQYMKFSKLAREIYGRYTDQIEPYGMDECWLDVTGS-GCMGTGF 121 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+T+ EL LT SAGV+ K AK+ SDM KP+ I + P + Sbjct: 122 EIADEIRRTVKFELGLTISAGVSFNKIFAKLGSDMKKPDAITCIEADSFREKIWCHPASD 181 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + GVG+ + L + G+ T G++ L R GK G ++ + + G+D+ V + Sbjct: 182 LLGVGRATEKVLSSYGIHTIGELAATSDDFLKCRLGKNGLVIKKYANGLDDSPVMRSDYV 241 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KS+G T +D+ + +E ++ L E+ +L K + ++ + + Sbjct: 242 SPVKSIGHGITTMQDLENNAEVWCVMLELVQEIGTKLRAHKKK--AGGIAISIRNN--EL 297 Query: 298 TTQE----HVWPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQM 343 T+E P + L TA + + +R V + L + Sbjct: 298 YTKEWQCRIGIPTQSPTYLAKTAFALFAKNYQWEHPIRSVTVRAINLFEED 348 >UniRef50_B9LT67 UMUC domain protein DNA-repair protein n=3 Tax=Halobacteriaceae RepID=B9LT67_HALLT Length = 476 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 178/386 (46%), Gaps = 41/386 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR---GVISTANYPARKFGVRSAMP 58 R + HVDMDCF+A+ E P L D P+ +G E G ++TA+Y AR FGV SAMP Sbjct: 19 RIVFHVDMDCFYASCERLRRPELADEPLVVGMGYEAGEAIGAVATASYEARAFGVESAMP 78 Query: 59 TGMALKLCPHLT-----------------LLPGRFDAYKEASNHIREIFSRYTSRIEPLS 101 AL L P LP D YKE ++ ++ + + +S Sbjct: 79 ISEALDLLPRRVNADPDDPDAPDPDEAGRYLPVDLDFYKEVASDVKTVLRDCADVLREVS 138 Query: 102 LDEAYLDVT---------------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVK 146 +DEAYLDVT A A+ I++ I E + AS GVAP Sbjct: 139 VDEAYLDVTDRTAWDAAGGESTATGPAETRTLAEGYARHIKERIEREAGVPASVGVAPNM 198 Query: 147 FLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKC 206 AKIASD +KP+G V+ P EV +FL +LP A+I GVG V+ L +G+ T GD+ Sbjct: 199 STAKIASDADKPDGLVVVPPGEVESFLASLPTAEIHGVGPVTERTLAELGIETAGDLAAA 258 Query: 207 DLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERL 266 D L G GR L+ R++G D+R+V L KS+ E +++ + L Sbjct: 259 DPDRLADELGDRGRELYRRARGDDDREVTPTGLPKSLSRESSLSA-TADEERKRETVRAL 317 Query: 267 YPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWP-RLNKADLIA-TARKTWDERR 324 ++ RR + L G+K ++ T+ P ++ DL+ A E Sbjct: 318 AADVARRARE--RGCLYRTIGIKAVEPPYEVNTRARSLPGPVDDPDLVESVALDLLGEFA 375 Query: 325 GGRGVRLVGLHVTLLDPQMERQLVLG 350 G R VR +G+ V+ LD Q LG Sbjct: 376 GDR-VRKLGVRVSKLDFAESDQATLG 400 >UniRef50_C3WGR0 DNA polymerase IV n=6 Tax=Fusobacterium RepID=C3WGR0_9FUSO Length = 352 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 12/353 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H DMD F+A++E+ NP L++ P+ +G + +++TA+Y ARK+G+ SAM Sbjct: 3 RIIMHYDMDAFYASIEINRNPKLKNKPLVVGEN-----IVTTASYEARKYGIHSAMKVSD 57 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCP L +P Y SN I + + T+++E ++ DE Y+D+T V Sbjct: 58 AKLLCPKLIAIPVDKKEYIRISNEIHNLILKITNKVEFIATDEGYIDLTGIVKPENK-KQ 116 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAK 180 A + ++ I LT S G+ K AKIASD+NKP G ++ + ++ + Sbjct: 117 FALKFKERIKELTNLTCSVGIGFNKLSAKIASDINKPFGIYIFENEKDFVEYISDKKIKI 176 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERL 239 IPGVGK L+ + DV K L L+K++GK G L+ +GI+ +V ER Sbjct: 177 IPGVGKKFFEILKHDKIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGINHDEVEYERE 236 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 S+G E T + + SE E L+ +RL +K ++ VK+++ F+ T Sbjct: 237 IHSIGNEETYSIPLQTNSELEREFNSLFEYTYQRL--LKNNVFSQSVTVKIRYSSFKTYT 294 Query: 300 QEHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 + K L + + +RL+G++ + QL + Sbjct: 295 KSKKLKFATKDKDFLYNEMLELLNSFELEDEIRLLGIYFGDIKRNTLIQLSIN 347 >UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2F2_ACICJ Length = 411 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 115/344 (33%), Positives = 167/344 (48%), Gaps = 9/344 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I HVD D F+A+VE RD P L D P+ +GG RGV++ Y AR GVRSAMP A Sbjct: 37 IAHVDCDAFYASVEKRDRPELTDKPVIVGGGT--RGVVAACCYIARLSGVRSAMPMFKAR 94 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP ++ Y A+ IR + + T ++PLS+DEA LD++ + H + + Sbjct: 95 KLCPDAVVIAPEMRKYAAAAAEIRALMATLTPLVQPLSIDEAALDLSGTAALHRAPPAVV 154 Query: 124 -QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 + + E+ +T S G+A + LAK+A++ +KP G V+ AE A L P+ +P Sbjct: 155 LSRFARQVEAEVGVTVSIGLAANRLLAKLAAERDKPRGFAVLG-AEAAAVLAPEPVGILP 213 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVG A KL MG+ G + + R G+ G +L R++GID R ++ R KS Sbjct: 214 GVGPALARKLAGMGITRVGQLAALNDRAARARLGEDGPMLAARARGIDPRPIDPARATKS 273 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE- 301 + E T AEDI + ++ L +L RRL A +KLK F+ T Sbjct: 274 ISAETTFAEDIDDAASLARVLFPLCEKLARRLR--AEGFAAAGLVLKLKTARFETHTHAV 331 Query: 302 -HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 P + A+ R G RL+G+ L E Sbjct: 332 RLTAPTQLAETIFEAAKPVL-MRAAGPRYRLIGIGAARLTDAAE 374 >UniRef50_B2VS10 DNA polymerase IV n=3 Tax=Pleosporineae RepID=B2VS10_PYRTR Length = 878 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 161/373 (43%), Gaps = 34/373 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV ++ +P +D P + + I++ NYPAR +GV++ M Sbjct: 388 RYILHVDFDSFFAAVSLKKHPEYKDKPAVVAHGQGSGSEIASCNYPARTYGVKNGMWMKR 447 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS--------- 112 A +LCP L +LP F AY+E S ++ ++ +S+DEA +DV++ Sbjct: 448 AQELCPDLKILPYDFPAYEETSRAFYDVILSTGGLVQSVSIDEALVDVSNLCISVGGSDG 507 Query: 113 --------VHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IA +R + + S G+ LAK+ KP GQ+ I Sbjct: 508 KAHSEGSVYREQAKANEIALNLRDEVRSRTGCNVSVGIGGNILLAKVGLRRAKPAGQYQI 567 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P E F+ L + +PGV KLE +G++ D+++ L++ G K G L+ Sbjct: 568 KPEEALDFIGQLQVQDLPGVAWSIGGKLEGLGIKLVKDIRELTKEKLIQTLGPKTGEKLY 627 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 E S+GID ++V + +RKSV E + + + I L EL++RL K K Sbjct: 628 EYSRGIDRQEVGEQVVRKSVSAEVNWGVRFENQEQADEFIASLCGELQKRLRKEKVKGKQ 687 Query: 284 ARQGVKLKFDD-----------FQQTTQEHVW----PRLNKADLIATARKTWDERRGGRG 328 V + D + T + L A G Sbjct: 688 FTMKVMRRSPDAPLDPSKHLGHGKCDTHNKSILLGVATNSSEVLTKEALAIVRGFAFTPG 747 Query: 329 -VRLVGLHVTLLD 340 +R +G+ +T L+ Sbjct: 748 ELRGIGIQMTKLE 760 >UniRef50_Q7Q6B2 AGAP005939-PA n=2 Tax=Culicidae RepID=Q7Q6B2_ANOGA Length = 1055 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 106/403 (26%), Positives = 176/403 (43%), Gaps = 64/403 (15%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR----------------------- 38 R I+H+DMDCFF +V +R P LR +P+A+ SR Sbjct: 288 RYIMHIDMDCFFVSVGLRKYPHLRGLPVAVTHSRGSEARVPSHPGQNRALEIELYHKRLE 347 Query: 39 -----------------------GVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGR 75 I++ +Y AR+ GV++ M G ALKLCP L +P Sbjct: 348 ERYKAPDIPIESRLAAIDEHNSLSEIASCSYEARQCGVKNGMFVGAALKLCPELKTIPYD 407 Query: 76 FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA-TLIAQEIRQTIFNEL 134 FD Y+E ++ + + +RYT IE +S DE ++D+T+ + G +R I Sbjct: 408 FDGYREVAHQLYDTIARYTLDIEAVSCDEMFVDLTELLQSTGVGVMEFVTYVRNEISTAT 467 Query: 135 QLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEA 194 SAG+ + A++A+ KPNGQ+ + P V +++ +P+A++PGVG ++ +L Sbjct: 468 GCDCSAGIGANRLQARMATKRAKPNGQYHLVPGAVEEYMKVIPIAELPGVGPSTSHRLRK 527 Query: 195 MGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDI 253 M TC D+Q +L FG KFG L+ +GIDER + +R RKSV V+ Sbjct: 528 MTYVTCADLQTIPKNVLQTEFGKKFGETLYNACRGIDERPLVYDRGRKSVSVDVNYGIRF 587 Query: 254 HHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK-------FDDF------QQTTQ 300 E E + +L E+ RRL +++ + + ++ F T+ Sbjct: 588 STEQEVERFMRQLTQEIHRRLVELRQRGKLVTVKLLVRSPEAPVETAKFMGHGLCDVVTK 647 Query: 301 EHVW-PRLNKADLIATARKTWDERRGGRG--VRLVGLHVTLLD 340 + +I A +R +G+ ++ + Sbjct: 648 SQPLRQHTDDRGMIEGAVLGLMRMLAIAPSELRGIGIQISKFE 690 >UniRef50_C8V695 Deoxycytidyl transferase (Eurofung) n=2 Tax=Emericella nidulans RepID=C8V695_EMENI Length = 1139 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 158/374 (42%), Gaps = 34/374 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD DCFFAAV +P L P+AI I++ NY AR GV++ M Sbjct: 340 RYIMHVDFDCFFAAVSTLKHPELEGKPVAIAHGTGTGSEIASCNYVARASGVKNGMWMKG 399 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT----------- 110 AL+ CP L +LP F AY+EAS ++ +S+DEA +D+T Sbjct: 400 ALQACPDLRVLPYDFPAYEEASRKFYRAILGIDGLVQSVSIDEALVDITTICLEAGGSEG 459 Query: 111 ------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A +A+++R I E S G+ AK+A KP GQF + Sbjct: 460 KGVSEGSIYREQAKADEVAEQLRAAIKRETGCAVSVGIGGNILQAKVALRKAKPAGQFQL 519 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ LP+ +PGVG +AKLE +G++ D++ L G K G L Sbjct: 520 KPDAVLDFIGELPVQNLPGVGYSLSAKLEDLGVKIVKDIRDLSREKLSSSLGPKTGAKLA 579 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + ++GID +V +E RKSV E + E + L EL RRL + Sbjct: 580 DYARGIDRTEVGNEVTRKSVSAEVNWGIRFVTQDQAEDFMRSLCEELHRRLVENLMKGQQ 639 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVWP-RLNKADLI-ATARKTWDERRGGRG 328 V + D + + N AD++ A G Sbjct: 640 LTLKVMRRALDAPLEAVKHLGHGKCDVFNKSVILGIATNAADVLGKEAIAMLRSLAISPG 699 Query: 329 -VRLVGLHVTLLDP 341 +R +G+ +T L+P Sbjct: 700 DLRGLGVQMTKLEP 713 >UniRef50_A1SN18 DNA-directed DNA polymerase n=13 Tax=Actinomycetales RepID=A1SN18_NOCSJ Length = 362 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 13/352 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGG--SRERRGVISTANYPARKFGVRSAMPTG 60 ++HVD+D F AAVE+ P L P+ +GG RGV++TA+Y AR FGV S MP Sbjct: 9 WVLHVDLDQFIAAVEVLRRPELAGRPVVVGGRGDPTERGVVATASYEARAFGVGSGMPLR 68 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRY----TSRI-EPLSLDEAYLDVTDSVHC 115 +A + CP LP +AY AS + + E L DEA+L + Sbjct: 69 VAARKCPDAVFLPVDKEAYDAASAQVMTTLRGLEWGGVPVVLEVLGWDEAFLAAGEDHGE 128 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 G+ A+ +R + E +L S G+ K AKIA+D KP G + +T A+ + Sbjct: 129 LGNPREFAEHLRAEVLAETRLHCSVGIGDNKLRAKIATDFGKPRGVWQLTEADWFPVMGE 188 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDV 234 P + G+G +A KL A+G+ T + + D +L G G +G+D V Sbjct: 189 RPTTALWGIGARTAKKLSALGIDTVEQLARSDARVLAAELGPTMGPWFHRLGRGVDTSPV 248 Query: 235 N-SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 + + + ++ G E T ED+ W + L + + + AR G+K+++ Sbjct: 249 DATPWVPRAHGREETYQEDLEDWDRVTEEVRALTRRVVDDI--DREGRPAARVGIKVRYR 306 Query: 294 DFQQTTQEHVWPR--LNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM 343 F ++ P + A L A + GR VRL+G+ + ++DP Sbjct: 307 PFSTVSRSLTLPEPSNDPAVLEDAAVSLLERVERGRPVRLLGVRLEMVDPPE 358 >UniRef50_B7AQS7 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQS7_9BACE Length = 413 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 101/358 (28%), Positives = 155/358 (43%), Gaps = 12/358 (3%) Query: 2 RKIIHVDMDCFFAAVEMRD-----NPALRDIPIAIGGS-RERRGVISTANYPARKFGVRS 55 R HVD++ F + + LR I +GG + R G++ + A + GVR+ Sbjct: 3 RVFFHVDVNSAFLSWSALKLLKEGHDDLRLIASCVGGDEKSRHGIVLAKSILAAQAGVRT 62 Query: 56 AMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 P MA K CP L + +FD Y + S + I +T +E S+DEA+LD+T Sbjct: 63 GEPLYMARKKCPGLVTVKPQFDWYVKNSRAMIAIMQEFTPDVEQYSIDEAFLDMTGMQTL 122 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 G A ++ I +EL T + G++ + LAK+ASD KP+ + P E+ + Sbjct: 123 MGPPLEAAARLKDRIRDELGFTVNIGISSNRLLAKMASDFEKPDKIHTLFPDEIDKKMWH 182 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERD-V 234 LP+ + GVGK +A L MG T GDV D +L+ + GK G + W + GI+ V Sbjct: 183 LPVGSLFGVGKSTAKALNNMGFYTIGDVAAADRGLLVSKLGKMGDMAWNYANGIESVAIV 242 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 E S G T ED+ II L + RL V L + Sbjct: 243 RHEAKENSYGNSVTTGEDVSSIDVALGIIMSLAESVALRLRTDGKK--AGVVTVTLVDTE 300 Query: 295 FQQTTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVL 349 F + + + P + A++ E R VRL+G+ + Q+ L Sbjct: 301 FNRHSHQCSLEYPTNTTDVIYENAQQLLYEMWKADRPVRLIGISAGKAAHEEFEQMSL 358 >UniRef50_A4QFK8 DNA polymerase IV n=28 Tax=Actinomycetales RepID=DPO4_CORGB Length = 467 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 109/362 (30%), Positives = 168/362 (46%), Gaps = 16/362 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H+DMD FFA+ E P LR P+ G RGV++ A+Y ARKFG RSAMP Sbjct: 3 RWVLHIDMDAFFASCEQLTRPTLRGRPVL-VGGVSGRGVVAGASYEARKFGARSAMPMHQ 61 Query: 62 ALKLCP-HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSA 119 A ++ R Y AS + +I + +E LS+DE +++ V Sbjct: 62 AKARVGFGAVVVTPRHIVYSAASRRVFQIVEKRAGIVERLSIDEGFMEPEALVGATPEEV 121 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A+E+R I L +S G K +AKI S KP+G FV+ + L LP+ Sbjct: 122 KQWAEELRAEIKEVTGLPSSVGAGSGKQIAKIGSGEAKPDGVFVVPVDKQHDLLDPLPVG 181 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSER 238 + GVG V+ +KL +MG+ T GD+ + G G LW ++GID+R V Sbjct: 182 ALWGVGPVTGSKLASMGVETIGDLAALTQKEVEISLGATIGISLWNLARGIDDRPVEPRA 241 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 K + E T +D+ + +A I R RRL +K VKL+ DF+ Sbjct: 242 EAKQISQEHTYEKDLLTRQQVDAAIIRSAEGAHRRL--LKDGRGARTVSVKLRMADFRIE 299 Query: 299 TQEHVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLD--------PQMERQLV 348 ++ + A L ATA + +RLVG+ + L+ P++++Q++ Sbjct: 300 SRSYTLSYATDDYATLEATAFRLARYPGEVGPIRLVGVSFSGLEESRQDILFPELDQQII 359 Query: 349 LG 350 + Sbjct: 360 VP 361 >UniRef50_B4MLB6 GK17515 n=1 Tax=Drosophila willistoni RepID=B4MLB6_DROWI Length = 1022 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 107/409 (26%), Positives = 175/409 (42%), Gaps = 66/409 (16%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--------------------- 40 R ++H+DMDCFF +V +R +P LR P+A+ S+ Sbjct: 273 RYVMHIDMDCFFVSVGLRLHPELRGQPVAVTHSKGGNAATDVPVHPQADRQAEQELFAQR 332 Query: 41 --------------------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPG 74 I++ +Y AR G+R+ M G AL+LCP L +P Sbjct: 333 FEHLLHDNIRADKVRTGFEKKMSLSEIASCSYEARAKGIRNGMFVGRALELCPELKTIPY 392 Query: 75 RFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTIFNE 133 FD Y+E +N + + ++YT IE +S DE ++++TD V +R+ + ++ Sbjct: 393 DFDGYREVANALYDTVAQYTLNIEAVSCDEMFVELTDLVSELQVDVMEFVGHLREEVRSK 452 Query: 134 LQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAKIPGVGKVSAAKL 192 SAGV K L+++A+ KPNGQF++ P ++ +++ L +PGVG + KL Sbjct: 453 TGCPCSAGVGANKLLSRMATKEAKPNGQFLLNPDGDILSYMAPTALESLPGVGSSISHKL 512 Query: 193 EAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAE 251 + GL CGDVQK + L G K + L + +GID R + E+ RKS+ E Sbjct: 513 KQAGLNNCGDVQKISVEQLETVLGKKMAQTLHQNCRGIDPRPLAYEQQRKSLSAEVNYGI 572 Query: 252 DIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK-------FDDF------QQT 298 SECE + +L E+ RL +VK + ++ F Sbjct: 573 RFTKTSECEKFLRQLSIEVHTRLKEVKRTTKSITLKLMVRAAEAPIETSKFMGHGVCDVW 632 Query: 299 TQEHVWPRLNKAD--LIATARKTWDE-RRGGRGVRLVGLHVTLLDPQME 344 T+ + + + +R VG+H+ L+ E Sbjct: 633 TKSALLRTGTADVNIITDQVLSLLKQSNLPSNELRGVGIHLNKLEDPTE 681 >UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0B0_9FIRM Length = 406 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 166/350 (47%), Gaps = 9/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR-ERRGVISTANYPARKFGVRSAMPTG 60 R I+H DM+ +F +VE+ +P L+D+P+A+ G+ R G+I N A+K+G+++ Sbjct: 5 RVILHCDMNSYFVSVELLKHPELKDLPVAVAGNPKNRHGIILAKNEIAKKYGIKTGETIW 64 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A C L LL +D Y + +IF RY+ RIE S+DE+++DVT S+ G+ Sbjct: 65 AAKNKCKDLELLSPHYDEYIKYHKLFNDIFYRYSDRIEKFSVDESWIDVTGSIKLFGTGK 124 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA +IR + EL +T SAGV+ K AK+ S+ KP+ VI+ L LP+++ Sbjct: 125 EIADKIRGEVREELGITLSAGVSFNKVFAKMGSEYKKPDATTVISRDNYKEVLWPLPVSE 184 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS---E 237 VGK++A L + G+ T D+ + +L G L + + G +V Sbjct: 185 FFMVGKITAKLLNSYGIYTIKDLAAAEPQILKAELGVKIYELIDSANGKSSDEVKYYKDN 244 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 S+G +T ED+ ++ + + L + +RL +L A V +K DF+ Sbjct: 245 EDPMSIGHGKTFKEDLVTSTQVKKEVWGLSEMVAKRLRS--HNLFAAGVKVVIKDSDFKS 302 Query: 298 TTQEHV--WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQME 344 +++ P + A + +R + + L P + Sbjct: 303 YSRQKKLRLPTDVTGHIAEEAFSLIKASWDFSKKLRAMSITGIDLRPDCK 352 >UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFE4_ANADF Length = 459 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 110/377 (29%), Positives = 172/377 (45%), Gaps = 34/377 (9%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 +I +D+D FF +VE +P L P+ +GG RGV++ A+Y R+ GV+S M A Sbjct: 17 RICCLDLDTFFVSVERLLDPTLEGKPVVVGGKPGSRGVVTAASYEVRRLGVKSGMSLFEA 76 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 K P+ LP R D Y + +REI R+ + S+DE YLD + + SA Sbjct: 77 GKRAPNAIYLPTRHDVYGTYAERVREIARRFAPTVRVASIDEMYLDFSGCERLYRSAGAA 136 Query: 123 AQ-----------------EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT 165 + ++ IF+EL L +SAGVA K +AK+AS + KP G ++ Sbjct: 137 RENGAEDRAGDAIIEGAVLQLTTAIFDELGLPSSAGVATSKVVAKVASALAKPRGVMLVP 196 Query: 166 PAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWER 225 A L LP+ PG+G V+ AKL A G +T G V + L L FG + + Sbjct: 197 AGVERAVLAPLPVRSFPGIGPVAEAKLHAAGYQTLGAVAEASLADLQTIFGAWAASISRG 256 Query: 226 SQGIDERDVNSERLR-----------KSVGVERTMAEDIHHWSECEAIIERLYPELERRL 274 QG+ D+ ER S+ ERT ED+ + EA++ L + R Sbjct: 257 VQGLGSGDLCRERPAFAEHDPEGETVGSISNERTFREDVTDPASIEAVLCGLCERVCWRA 316 Query: 275 AKVKPDLLIARQGVKLKFDDFQQTTQEH-VWPRLNKADLIATARKTW-DERRGGRGVRLV 332 + + +KL++ DF T+ H ++ +L ++ + R +RL+ Sbjct: 317 R--RRHVKARTVTLKLRYADFHTLTRSHTTMATNSELELYPIVKEMFAAARTRSLPIRLL 374 Query: 333 GLHVTLLDPQMERQLVL 349 G+ ++ L QL L Sbjct: 375 GVQLSSL--GTFEQLPL 389 >UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiales RepID=A9KLV9_CLOPH Length = 432 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 175/360 (48%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDN-------PALRDIPIAIGGSRE-RRGVISTANYPARKFGV 53 + H+D++ F + E LR+IP IGG +E R G++ + A+K + Sbjct: 17 KIFFHIDVNSAFLSWEAAYRLHVLGESVDLREIPSVIGGDKENRHGIVLAKSTSAKKLKI 76 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 + G A++ CP+L ++P + Y +AS + EI R++ ++E S+DEA++D++ S Sbjct: 77 HTGEALGAAVQKCPNLVIIPPNYQRYVKASKSLMEILHRFSPKVEQYSIDEAFVDMSGSE 136 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 +G ++A ++ I EL+ T + GV+ K LAK+A ++ KPN + P E+P + Sbjct: 137 LLYGGPVIVANNLKDLIEEELKFTVNIGVSSNKLLAKMAGELKKPNLVHTMFPEEIPKKM 196 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERD 233 LP+ ++ VG+ + KL +G++T G++ + D+ +L FGK+G +L++ S GIDE Sbjct: 197 WPLPVGELFFVGRATEKKLFNLGIKTIGELAQTDVKILKAHFGKYGEVLYQFSHGIDESP 256 Query: 234 V-NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 + K G T DI ++ L + RL V + Sbjct: 257 LFVPLEANKGYGNSVTTPYDIVTMEHANLVLLSLSETVCTRLRMDGVKGQC--VSVSVTT 314 Query: 293 DDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVL 349 D FQ+ + + + ++ A + + GR +R +G+H + + + Q L Sbjct: 315 DTFQRASHQGMLFSASNTTMEVYRFACRLFKNLWDGRTPIRQMGVHTSRITKESTMQYNL 374 >UniRef50_A7E7M1 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7E7M1_SCLS1 Length = 1255 Score = 306 bits (784), Expect = 9e-82, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 159/374 (42%), Gaps = 34/374 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF AV ++ P D P + I++ NYPAR FGV++ M Sbjct: 435 RYIMHVDFDSFFCAVSLKSAPEYFDKPAVVAHGNGTGSEIASCNYPARVFGVKNGMWMKN 494 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS--------- 112 A+KLCP + +LP F AY+EAS E + +S+DEA++D+T Sbjct: 495 AIKLCPDIKVLPYDFPAYEEASKAFYEAILDVGGIFQSVSVDEAFVDITSLCLAAGGTDG 554 Query: 113 --------VHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A I +R+ I + S G+ LAK+A KP GQ+ I Sbjct: 555 VGIREGSIWREQERAEEIGNALRKVIREKTGCNVSVGIGGNILLAKVALRKAKPAGQYQI 614 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P EV F+ L + +PGV KLE +G++ DV++ L+ G K G +W Sbjct: 615 KPEEVLDFVGELDVQNLPGVAYSIGGKLEEIGVKFVKDVRQLSKDRLMTVLGPKTGEKIW 674 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + S+GID +V + +RKSV E E E ++ L EL+RRL + Sbjct: 675 DYSRGIDRAEVGEQVVRKSVSAEVNWGIRFISQVEAEEFVQNLCIELQRRLIDQRVKGRQ 734 Query: 284 ARQGVKLKFDD-------F------QQTTQEHVWPR-LNKADLI-ATARKTWDER-RGGR 327 + K D F + V N A +I A Sbjct: 735 MTMKIMRKAADAPLDPPKFLGHGNCDTFNKSIVLGVATNDATIIGREAVSILRSYGFSPG 794 Query: 328 GVRLVGLHVTLLDP 341 +R +G+ +T L+P Sbjct: 795 ELRGLGVQMTKLEP 808 >UniRef50_C7DHN7 DNA-directed DNA polymerase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHN7_9EURY Length = 350 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 117/344 (34%), Positives = 179/344 (52%), Gaps = 9/344 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAM 57 M +I++DMD FFAA E + +P L+ P+A+G S RGV+ T NY ARK+G+RS M Sbjct: 1 MGLVIYIDMDYFFAACEEKRHPELKGRPLAVGTSDSADKLRGVVQTCNYEARKYGIRSGM 60 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 PT A +L L + Y+E SN I E S +E +S+DEA +DV D +G Sbjct: 61 PTLKAFQLYKDLQYVKADDAYYEEVSNAIMEYLSSLGFPLEKMSIDEAAIDVGDL--GYG 118 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 A +A+ I++ I L L + G++ K AK+A D KP+G + + FL++ Sbjct: 119 KANELAERIKEEIKQRLGLPCTIGISIGKVFAKMACDKAKPDGLLTLDEVHLHEFLKSTD 178 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + K+PGVG S KL AMG+++ D++ D + L+ FG FGR L+ + GIDE V SE Sbjct: 179 VKKLPGVGSKSYEKLSAMGVKSIADIRNIDPLRLVDEFGSFGRELYALAGGIDESKVVSE 238 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 S+ ERT+ E ++++E L E+ L K K + GVK+++ DF + Sbjct: 239 ERVLSISRERTLRGLEDQQKEIDSMLEVLSKEVIAELNKRKMEF--GGVGVKVRYVDFSE 296 Query: 298 TTQEHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLL 339 ++ + + L + A E VR +G+ L Sbjct: 297 KVRDRSLSYYSNSYDVLYSNAVSMIRELSRANKVRKIGVKAYRL 340 >UniRef50_B0R4P0 DNA polymerase IV n=7 Tax=Halobacteriaceae RepID=DPO4_HALS3 Length = 411 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 164/364 (45%), Gaps = 19/364 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS---RERRGVISTANYPARKFGVRSAMP 58 R ++HVDMDCF+A+ E R PALR P+ +G + G ++TA+Y AR++GV SA Sbjct: 16 RIVVHVDMDCFYASCERRREPALRGAPVVVGMGYEPDQTVGAVATASYEAREYGVESAQA 75 Query: 59 TGMALKLCPH----------LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLD 108 AL+ P P Y+ S + EI + +S+DEAYLD Sbjct: 76 ISAALERLPRKADAPDASAAGYYRPVDMAYYESVSESVSEILHGLGDPVREVSIDEAYLD 135 Query: 109 VTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE 168 VTD A + I+Q I + + AS G+AP AK+ASD KP+G V+ P Sbjct: 136 VTDRT-AWDVAAGFGRHIKQRIARSVGVPASVGIAPDMSTAKLASDHEKPDGLVVVPPES 194 Query: 169 VPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQG 228 V +FL L +A + GVG V A L G+ T G++ D +L FG+ GR R++G Sbjct: 195 VQSFLAPLDVADLHGVGPVHARALRERGIETVGELADADPYVLEAAFGERGREFHRRARG 254 Query: 229 IDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV 288 D R V KS+ E + + L + R + + + GV Sbjct: 255 ADSRPVEPRGKPKSLSRESSFDGATESFDRVREQAAALSGAVADRAS--RTNASYRTIGV 312 Query: 289 KLKFDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQ 346 K+ + T+ P + A L A ++ DE G VR VG+ V+ L Q Sbjct: 313 KVVTPPYDVQTRAESLPGPVDDPALLEAVSQSLLDEFE-GAAVRKVGVRVSNLVFSEREQ 371 Query: 347 LVLG 350 L Sbjct: 372 ATLA 375 >UniRef50_A0QHM7 DNA polymerase IV 1 n=8 Tax=Corynebacterineae RepID=A0QHM7_MYCA1 Length = 458 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 155/352 (44%), Gaps = 8/352 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +H+DMD FFA+VE P LR P+ G RGV++ A+Y AR FG RSAMP A + Sbjct: 2 LHLDMDAFFASVEQLTRPTLRGRPVL-VGGLGGRGVVAGASYEARVFGARSAMPMHQAKR 60 Query: 65 LC-PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH-GSATLI 122 L +LP R Y AS + + +E LS DE + + Sbjct: 61 LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAEDVEAF 120 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 +++R+ + + L AS G K +AKIAS + KP+G V+ AE L LP+ ++ Sbjct: 121 CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGGLPVRRLW 180 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRK 241 G+G V+ KL +G+ T G++ G G L ++GID+R V K Sbjct: 181 GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK 240 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 + E T A D+ + IE + RL ++ VKLK D T+ Sbjct: 241 QISSESTFAADLTTLEQLREAIEPIAEHAHHRL--LRDGRGARTVTVKLKKSDMSTLTRS 298 Query: 302 HVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P A L+ AR+ + R +RL+G+ + L + L L Sbjct: 299 ATLPYATTEAAALVGVARRLLLDPREIGPIRLLGVGFSGLSEVRQESLFPDL 350 >UniRef50_Q6F1D8 DNA polymerase IV (PolIV) n=1 Tax=Mesoplasma florum RepID=Q6F1D8_MESFL Length = 370 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 91/358 (25%), Positives = 171/358 (47%), Gaps = 18/358 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I+H+DMD FFA+ E + L++ P+ + + + R +I A+Y ARK+G+++ P Sbjct: 4 KVILHLDMDAFFASCEQAHDKTLKNKPVVVARNND-RSIIVAASYDARKYGIKAGTPIFE 62 Query: 62 ALKLC-PHLTLLPGRFDAYKEASNHIREIF-SRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A +L L + G D Y+E S I + ++T ++E L +DE ++D T+ +G+ Sbjct: 63 AKQLAYGELIIKEGNRDLYEEYSERIFNLIKEQFTYKVEVLGIDECFIDATNIWEKYGNV 122 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 + I+ ++ E LT S G + + +K+ SDM KPNG +IT + + Sbjct: 123 QNLCLAIQAAVYQETGLTCSIGASFTRLFSKMGSDMKKPNGITIITKENFKTLIWNKSIK 182 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS-ER 238 + GVG S K+E + ++T D K D ++ FG G+ ++++ GI ++ E Sbjct: 183 DVIGVGSSSLEKMELLNVKTVNDFVKLDEKIIADSFGLSGQKMYQKLHGIKNDEIAYWET 242 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD----D 294 KS+ E+T + + E I+ L ++ L K ++L + +KF + Sbjct: 243 SVKSISKEKTFDKKNMAIEDIEEILFNLAEKV--VLRMQKNNILAKTVTLSIKFYNQEIN 300 Query: 295 F------QQTTQEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 F ++ T + + L + + D+ G + L+G+ VT L + + Sbjct: 301 FDKKEQKKRRTYSETFNEYTDSLEKLYSRVKVILDDIYDGESISLIGIGVTNLIEKDK 358 >UniRef50_A2DLM9 ImpB/MucB/SamB family protein n=1 Tax=Trichomonas vaginalis RepID=A2DLM9_TRIVA Length = 592 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 122/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + +H D+D FFA+ E +P+L A+GG + GV+ST +Y ARKFGVRS M + Sbjct: 86 KTYLHADLDSFFASCEALRDPSLVGTAFAVGG-EIKHGVLSTTSYEARKFGVRSGMAVFI 144 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HGSAT 120 AL+LCPHL ++ ++ YK S+ +R+IF +Y S LDEA LD+++ V + A Sbjct: 145 ALQLCPHLKIVESHYELYKHYSSIVRKIFEKYDSHYISFGLDEASLDLSEHVKLDYEKAM 204 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVP--AFLQTLPL 178 IA+ I++ +F + +LT S G+A LAKIASD+NKPNG F I F+ LP+ Sbjct: 205 DIAKNIQKEVFEQTKLTISCGIAITPQLAKIASDVNKPNGIFEIKHDRESTLDFISKLPI 264 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 KIPG+G V+ L +G+ T DV +K DL + ++ F + ++ GI+ + Sbjct: 265 RKIPGIGGVAEQLLHGIGITTMKDVMDKKTDLWICMRPL--FCQFIFSACLGINRQTFGV 322 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R ++S+ ERT ++ + E IIE+L E+ + L ++ ++L VK K FQ Sbjct: 323 TRHQQSISKERTF-DNTNDRVFMEEIIEKLCMEVCKLLQEM--NVLCRNVTVKFKDSSFQ 379 Query: 297 QTTQEHVWPRLNKA--DLIATARKTWDERRGGRGV--RLVGLHVTLLD-PQMERQLVL 349 T+ + D+ K ++ R V RL+G+ L P+ +RQ+ + Sbjct: 380 TITRCLSFDHDTNKIFDIFCACVKILNDELRSRYVKYRLLGVRCGQLSTPRAKRQISI 437 >UniRef50_B6Q3Z2 DNA damage repair protein Mus42, putative n=5 Tax=Eurotiomycetidae RepID=B6Q3Z2_PENMQ Length = 1167 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 107/375 (28%), Positives = 164/375 (43%), Gaps = 35/375 (9%) Query: 2 RKIIHVDMDCFFAAVEM-RDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 R I+HVD D FFAAV + + +P L D P+AI I++ NYPAR FG+++ M Sbjct: 366 RYILHVDFDSFFAAVSINKHHPELVDKPVAIAHGTGSGSEIASCNYPARAFGLKNGMWMK 425 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT---------- 110 AL CP L +LP F AY+EAS + ++ +S+DEA +DVT Sbjct: 426 GALDRCPELKVLPYDFPAYEEASRQFYDCILAVDGVVQSVSIDEALIDVTMQCLQAGGSD 485 Query: 111 -------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFV 163 A IA +R I + S GV AK+A KP GQ+ Sbjct: 486 GRGISEGSIYREQAKADEIATSLRHAIKKKTGCAISVGVGGNILQAKVALRKAKPAGQYQ 545 Query: 164 ITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRIL 222 + P EV F+ L + +PGV KLE +G++ D++ L+ G K G L Sbjct: 546 LKPDEVLDFIGNLTVQDLPGVAYSLGGKLEEIGVKFVKDMRDLTRERLVSHLGPKTGAKL 605 Query: 223 WERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLL 282 ++ ++GID+ +V + +RKSV E + ++ E ++ L EL RRL + Sbjct: 606 YDYARGIDKAEVGVQTMRKSVSAEINWGIRFTNQTQAEEFVQSLSEELHRRLVENLVKGK 665 Query: 283 IARQGVKLKFDDF-------------QQTTQEHVWP-RLNKADLIA-TARKTWDERRGGR 327 V + D + + N +D+I+ A Sbjct: 666 QLTIRVMRRSADAPLEPVKHLGHGKCDIFNKSVLLGIATNASDIISKEAIAMLRSFGFTP 725 Query: 328 G-VRLVGLHVTLLDP 341 G +R +G+ +T L+P Sbjct: 726 GDLRGLGVQMTKLEP 740 >UniRef50_C1A9Y5 DNA polymerase IV n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9Y5_GEMAT Length = 441 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 103/358 (28%), Positives = 164/358 (45%), Gaps = 17/358 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIP--IAIGGSRERRGVISTANYPARKFGVRSAMPT 59 R+I+ VD D FF AV +++P + +GG RGV+ +A+Y R +GVRSAMP Sbjct: 10 RRILLVDADAFFVAVARQEDPEGAGKATLLIVGGRPGSRGVVCSASYECRAYGVRSAMPI 69 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 ALKLCP +P S I+ + +++ ++P S+DE Y D+ + +G Sbjct: 70 SRALKLCPQAMCVPVPRHVCGTRSREIQAVLAQFAPVVQPSSIDEWYCDLGGTEALYGHE 129 Query: 120 --TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKP------NGQFVITPAEVPA 171 A+ +R+ +F L S G + +AK+A ++ KP G + P Sbjct: 130 PLEETARRMREAVFAATGLRVSIGGGTSRLVAKMAVEVAKPKPGTGATGVRCVPPGTEAE 189 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGID 230 FL LA +P VG A KLE MGL T Q+ L+ R G + G+ L R +G D Sbjct: 190 FLSRFKLADLPMVGPRFATKLERMGLETIAQAQQWTEDTLVHRLGDRAGQWLSRRIRGQD 249 Query: 231 ERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKL 290 E V +K V E T ++H E + RL + L + L VKL Sbjct: 250 ESIVRPRDRQKQVSRETTFGRNLHEDDVVERELLRLAVRVSADLR--RQALRARTITVKL 307 Query: 291 KFDDFQQTTQEHVWPRLNKAD--LIATARKTWDERRGGR--GVRLVGLHVTLLDPQME 344 + DF+ + + +++ ++ A+ + R R VRL+G+ ++ + E Sbjct: 308 RDGDFRTRSAQRTLSGFIESEHSVVRAAKPLLRQMRKTRRAPVRLLGIALSHFEDDEE 365 >UniRef50_B6K5W3 DNA polymerase kappa n=2 Tax=cellular organisms RepID=B6K5W3_SCHJY Length = 532 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 117/359 (32%), Positives = 178/359 (49%), Gaps = 25/359 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D F+A+VE + PA + P+A+G GV+ TANY ARKFGVRSAMP + Sbjct: 115 RIIVHVDCDAFYASVEELEKPAYKTKPMAVGQ-----GVLCTANYCARKFGVRSAMPEFI 169 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---S 118 A +LCP+L +LP R Y+E S I +I Y + S+DEAYLD+TD + H + Sbjct: 170 ARQLCPNLIVLPLRMMKYQEKSAEIAKILQEYDPNMCKASVDEAYLDLTDYLTKHNEEET 229 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTL 176 + + +RQT+ + +T S G+ LAKIAS+M KPN QF I T + F+ TL Sbjct: 230 VEAVVEHLRQTVAEKTGITVSCGIGANLMLAKIASNMRKPNDQFSIGRTREAILEFMDTL 289 Query: 177 PLAKIP--------GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQ 227 P K+ G+G+V +L ++ + CGD+ + L F K + L + Sbjct: 290 PCRKVYLELNHNVNGIGRVLEQELSSLNVHNCGDILR-RKGYLYYVFQEKSFQNLLSYAL 348 Query: 228 GIDERDVNSE--RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR 285 GI V RKS+G E T + + +++L + + + +L+ Sbjct: 349 GISNNVVKPTDASNRKSIGNEMTFSIPMGSEKTISQKLKQLCFSVSETMK--QRNLVGNS 406 Query: 286 QGVKLKFDDFQQTTQEHVWPRL-NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM 343 +KLK F+ T++ N++D+I VRL+G+ +T L Sbjct: 407 VVLKLKTTSFEVRTRQTNLNTYTNESDIIYKYVLQLLSYELPVQVRLLGVRMTKLQDAS 465 >UniRef50_A4VCZ3 DNA polymerase IV / kappa n=1 Tax=Tetrahymena thermophila SB210 RepID=A4VCZ3_TETTH Length = 950 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 116/355 (32%), Positives = 179/355 (50%), Gaps = 21/355 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R +H DMD F+ A E++D P L+D+P+A+GG +ISTANY ARKFGVRSAMP + Sbjct: 104 RIWVHFDMDMFYVACELKDRPQLKDLPVAVGGM----SMISTANYVARKFGVRSAMPGFI 159 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---- 117 A KLCP L L+P F+ Y++AS+ +++ +Y +E + LDEA LD+TD + + Sbjct: 160 AKKLCPQLILIPCNFEKYRKASDQFKKVLYQYDPNLESMGLDEANLDITDYLQQNNINSD 219 Query: 118 -SATLIAQEIRQTIFNEL-QLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFL 173 + IR +F LT S G+ P K LAKI SDMNKPNGQF + ++ F+ Sbjct: 220 AQIYDLCHSIRNQVFESTGGLTCSCGIGPNKMLAKICSDMNKPNGQFQLINDEEKIKDFM 279 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQK--CDLVMLLKRFGKFGRILWERSQGIDE 231 + LP+ KIPG+G V+ L+ +G+ C + + D+ + K L + GI Sbjct: 280 KDLPIRKIPGIGNVTEQILKGIGIEKCSQILERVIDIKICFKDL--SFDHLVSSALGIGR 337 Query: 232 RDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 E +KS+ V RT + I E I ++ L + V K Sbjct: 338 SWHEEETEKKSLSVSRTF-QAISTIEEINEKIHQISQLLAEDAK--AEQKIGKHLAVSFK 394 Query: 292 FDDFQQTTQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 FQ ++ + + + + A++ E +RL+G+ ++ L + E Sbjct: 395 NVKFQMRSKNRMLDKYIQDSEQIEKVAKELVKELLPTEPLRLIGIRLSQLADENE 449 >UniRef50_Q29DW0 GA11465 n=3 Tax=Drosophila RepID=Q29DW0_DROPS Length = 954 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 173/408 (42%), Gaps = 66/408 (16%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV---------------------- 40 I+H+DMDCFF +V +R +P R +PIA+ S+ Sbjct: 272 YIMHIDMDCFFVSVGLRSHPEWRGLPIAVTHSKGGNAATDVPVHPQADRQAELKLFAERF 331 Query: 41 -------------------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGR 75 I++ +Y AR G+R+ M G ALKLCP L +P Sbjct: 332 EHQLHDNIRADKVRSGFDKKMSLSEIASCSYEARAKGIRNGMFVGQALKLCPELKTIPYD 391 Query: 76 FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSATLIAQEIRQTIFNEL 134 F+ YKE + + + ++YT IE +S DE ++D+TD V +R+ + N+ Sbjct: 392 FEGYKEVAFALYDTVAQYTLNIEAVSCDEMFVDLTDLVEDLQVDVMSFVAHLREEVRNKT 451 Query: 135 QLTASAGVAPVKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAKIPGVGKVSAAKLE 193 SAGV K LA++A+ KP+GQ+++ P +V ++ L +PGVG KLE Sbjct: 452 GCPCSAGVGTNKLLARMATKRAKPDGQYLLGPGTDVLGYMAPTALETLPGVGSSLRHKLE 511 Query: 194 AMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAED 252 GLR C DVQ+ L L G K L+E +GID R + E+ RK+V E Sbjct: 512 QAGLRNCADVQRTSLQTLESVVGKKLALTLYENCRGIDTRPLVYEQKRKTVSAEVNYGIR 571 Query: 253 IHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD-------F------QQTT 299 + +ECE + +L E+ RL +K V ++ + F Sbjct: 572 FTNTTECETFLRQLSAEVTTRLTDIKRKAKSIGLKVMVRAAEAPIEASKFMGHGVCDTIN 631 Query: 300 QEHVWPRLNKA--DLIATARKTWDER-RGGRGVRLVGLHVTLLDPQME 344 + + + + + E +R +G+H++ L E Sbjct: 632 KSFILTHATDDVNVITSHVLRLMKESGLPPHELRGIGIHLSKLSEATE 679 >UniRef50_A2FMN4 ImpB/MucB/SamB family protein n=1 Tax=Trichomonas vaginalis RepID=A2FMN4_TRIVA Length = 519 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 201/355 (56%), Gaps = 13/355 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 +H D+D FFA+VE +P+L+ A+GGS +RG+IST++Y ARK+GVRS M +A Sbjct: 90 TYMHCDLDSFFASVEALLDPSLKGTAFAVGGSV-KRGIISTSSYEARKYGVRSGMAVFVA 148 Query: 63 LKLCPHLTLLPGRF-DAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 +KLCPHL ++ D Y S ++E+F +Y DEA LD+T ++ + + Sbjct: 149 MKLCPHLNVVHYNHGDKYMNFSKQVQEVFKKYDPEFVSFGCDEATLDITPLLNDNLHSDQ 208 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP--AEVPAFLQTLPLA 179 +A++I+Q +F++ +LT S GVA L+KIASD+NKPNG F++ ++ +FL TLP+ Sbjct: 209 LAKQIQQEVFDKTKLTVSIGVAHTPQLSKIASDINKPNGIFIVPKNDDDLKSFLHTLPVR 268 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 KIPG+G V+ L+ +G+ TCGD+ + L KF R ++ + G+ R+ S Sbjct: 269 KIPGIGGVNEQILKGIGIETCGDILLKKAEIWLTMSHKFCRFVFSAAVGVQPREYES-GP 327 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 ++S+ +RT+ ++E L ++ +++ K++ + VK K +F+ + Sbjct: 328 QQSISKDRTIDA-TDDKCTLIDLVESLARKISKKMKKMR--IACRNVAVKFKDINFKVIS 384 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGV--RLVGLHVTLL-DPQMERQLVL 349 + + + +++DL+ + K E R R + RLVG+ T L P ++Q + Sbjct: 385 KSYTFDYDTSDESDLVNASLKLLLEERQERSIKLRLVGVKATNLTSPGDKKQSSI 439 >UniRef50_Q2HFL9 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2HFL9_CHAGB Length = 1141 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 105/380 (27%), Positives = 164/380 (43%), Gaps = 45/380 (11%) Query: 2 RKIIHVDMDCFFAAVEMRDN-PALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 R I+HVD D FF AV + + P RD P + S I++ NYPARKFGV++ M Sbjct: 311 RYIMHVDFDSFFCAVSLNRHAPDHRDKPTVVAHSTGSGSEIASCNYPARKFGVKNGMWMK 370 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV------- 113 A +L P + ++P F AY+EAS + ++ +S+DEA +D+TD + Sbjct: 371 RAQELYPDIKVVPYDFPAYEEASKLFYDAILDVGGVVQSVSIDEALVDITDIILSAAGSS 430 Query: 114 ----------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFV 163 A IA +R I + S G+ LAK+A KP GQ+ Sbjct: 431 GVGISEGSIWQEQEKADEIATNLRAEIKRKTDCHVSVGIGGNILLAKVALRKAKPAGQYQ 490 Query: 164 ITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRIL 222 + P EV L L + +PGV KLE + ++ D+++ L+ G K G L Sbjct: 491 VRPEEVLDILAPLKVEDLPGVAYSIGGKLEEIDVKFVSDLRQTSKERLVSILGPKTGEKL 550 Query: 223 WERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLL 282 WE ++GID +V + +RKSV + +E E + L ELERRL + + Sbjct: 551 WEYARGIDRAEVGEQPIRKSVSADVNWGIRFVSQAEAEEFVHNLCKELERRL--LNEGVK 608 Query: 283 IARQGVKL------------------KFDDFQQTTQEHVW--PRLNKADLIATARKTWDE 322 +K+ K D F T+ + + + + Sbjct: 609 GKNLTMKIMRRALDTPLDPAKHLGHGKCDTF---TKSVTFGVATNDSGVIAKESVAILRS 665 Query: 323 RRGGRG-VRLVGLHVTLLDP 341 + G +R +G+ +T L+P Sbjct: 666 YKFSPGDLRGLGVQMTKLEP 685 >UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDA2_9FIRM Length = 469 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 172/356 (48%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ +A +E NP L+ P+A+GGS+E R G+I N A+K+ +++ Sbjct: 50 RAIVHSDINHCYAQIEEMLNPELKQRPMAVGGSQEERHGIILAKNLHAKKYKIQTGETLD 109 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L +LP + Y+ ++ ++ I+ YT R+E LDEA+LD+T S G A+ Sbjct: 110 EARIKCPQLLILPPDYRRYQRITDQVKAIYREYTDRVEEYGLDEAWLDLTQSQRLFGPAS 169 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+ I+Q ++ EL LT S G++ K AK+ASD KP+G IT A + L + + Sbjct: 170 QIARTIQQRVYAELGLTISIGLSFNKIFAKMASDFVKPSGFVTITRANFQEKIYPLSVRE 229 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + VG + KLEA G+ T GD+ D + + FGK G +L + G D +V Sbjct: 230 LFYVGAATQKKLEAWGITTIGDLASRDRQFMRRYFGKVGEMLHWFALGEDISEVALASEA 289 Query: 241 ---KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF-DDFQ 296 KSVG T D+H E ++ L + RL L + L+ F+ Sbjct: 290 IPVKSVGNSVTAVHDLHTHGEARLVLRVLAESVASRLRD--QGLKGKGIALSLRDIHLFR 347 Query: 297 -QTTQEHVWPRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLL-DPQMERQLVL 349 ++ P +++ A + +R +G+ V L Q QL L Sbjct: 348 WSLQRKRARPTQLAEEILEDAEILLRQAWQNALPLRSIGISVFDLCLDQTGEQLDL 403 >UniRef50_A9V4K7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V4K7_MONBE Length = 1412 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 156/326 (47%), Gaps = 38/326 (11%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H+D+D FF ++ +R+ L+D P+AI S RE IS+ NYPAR+FG+R+ M Sbjct: 321 RVIVHIDLDAFFVSIALRERQELQDQPVAIAHSGREGSSEISSCNYPARQFGIRNGMSMR 380 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA- 119 AL CPHL LP FD YK AS + + T RI+ +S+DEAYLD+T V S Sbjct: 381 RALAACPHLQTLPYEFDKYKLASQAFYRLLTARTLRIQAVSMDEAYLDLTGLVRPDYSPH 440 Query: 120 ---------------------------------TLIAQEIRQTIFNELQLTASAGVAPVK 146 T E+R I EL + ASAG+ P Sbjct: 441 LWQAVQQRQHEGHPPLSPAPLQEASLPVPTQSATEFVAELRTAIAEELGIAASAGIGPNV 500 Query: 147 FLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKC 206 LA++ + + KPNG + A V F+ L +PGVG +A +L MG+ +C D++ Sbjct: 501 LLARLCTRLAKPNGLYSYAEANVERFIDQTALKDLPGVGWCTAGRLTTMGIASCADLRAL 560 Query: 207 DLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIER 265 L L FG K G+ L+ +GID + KSV VE T ++ + + Sbjct: 561 PLDRLQADFGHKNGQALYNACRGIDPSPLKDNAPPKSVSVEITWGVRFDKDAQVDTFVSN 620 Query: 266 LYPELERRLAKVKPDLLIARQGVKLK 291 L E+ RL V L R +K+K Sbjct: 621 LCREVCSRLEAVGQ--LATRVTLKIK 644 >UniRef50_C8WGA6 DNA-directed DNA polymerase n=3 Tax=Bacteria RepID=C8WGA6_EGGLE Length = 448 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 170/366 (46%), Gaps = 19/366 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I H DM+ F+A+VE + P LR +P+ +GG E R G++ + A+ GV++ Sbjct: 28 RVIFHSDMNAFYASVEQAERPELRGVPLVVGGHEELRHGIVLAKSAQAKAAGVKTGEALW 87 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HGSA 119 A CP L ++P R++ Y+ S R I+ +YT +EP LDEA+LD+T S+ G Sbjct: 88 EARAKCPGLVVVPPRYEVYQAYSAMARRIYYQYTDLVEPFGLDEAWLDLTGSLPLLGGDP 147 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A EI I EL T S GV+ K AK SD KP+ ITP + P++ Sbjct: 148 ARTAAEISGRIKAELGCTVSVGVSWNKIFAKFGSDFRKPDAITFITPQNYRCRVWEAPVS 207 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS--- 236 ++ VG + AKL + G+ G++ +L +R GK G +L ++G D V Sbjct: 208 ELLYVGAATRAKLHSSGIDRIGELACASPELLRRRLGKIGLVLRAFARGEDATPVKPYDQ 267 Query: 237 -----ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 +R KS G T DI S+ +A++ L + +RL + + + + ++ Sbjct: 268 ARNEVDRTVKSFGNGLTAPHDIVSASDAKALVYLLSESVAQRLREAR--FRASTVSIGVR 325 Query: 292 FD-DFQQTTQEHVWPRLNKAD--LIATARKTW--DERRGGR-GVRLVGLHVTLLDP-QME 344 D +++ R + TA +E G +R + + + L+P Sbjct: 326 SARDLASYSRQTTLRRATNVTGVVARTAWGLLAANEPLDGEHPLRGLHVRASNLEPCDAP 385 Query: 345 RQLVLG 350 +QL L Sbjct: 386 QQLELA 391 >UniRef50_B5Y6A2 DNA-directed DNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6A2_COPPD Length = 390 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 102/347 (29%), Positives = 165/347 (47%), Gaps = 15/347 (4%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG----VISTANYPARKFGVRSA 56 MR I+HVDMD FFA+ E NP L+ PI + RG VI+ A+Y A++ GV++ Sbjct: 1 MRWIMHVDMDAFFASCEQAINPKLKGKPIGVMADPYGRGKKRSVIAAASYEAKRKGVKAG 60 Query: 57 MPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 MP A LCP L L+ Y N + + +S +E S+DE ++ + Sbjct: 61 MPPKEAFNLCPDLILVQAHPSFYGYVHNQMLKYARSISSEVENYSIDEFFM-----TYYG 115 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 + +EIR+ + + +T S G+AP K LAK+A++ KP+G P +P+ + L Sbjct: 116 KDPDKVGEEIRRYVKKQFGITCSVGIAPGKILAKMATEEGKPDGLTWWKPQAIPSVYKYL 175 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERD-VN 235 P++ IPG+G A L G+ T D+ ++ G G + +QGIDE + Sbjct: 176 PVSAIPGIGSRREALLNKNGIYTLEDLALTPKPIIKNLMGILGEYYQKIAQGIDETPLIT 235 Query: 236 SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 E KS+ T+ EA+ L L + L ++ + + L++DD Sbjct: 236 QESPLKSITRSVTLDASTLSPLVVEAVGRLLCDSLGKGLEEI--NSRAKELFIFLRYDDM 293 Query: 296 Q-QTTQEHVWPRLNKADLIATARKTWDE--RRGGRGVRLVGLHVTLL 339 ++T + N D+I K ++ R +GVRLVG+ +T + Sbjct: 294 SAESTGMKLEFYTNDPDVIFHNFKMLNKELRPYKQGVRLVGVGMTDI 340 >UniRef50_B8M4C5 DNA-directed polymerase kappa, putative n=14 Tax=Leotiomyceta RepID=B8M4C5_TALSN Length = 654 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 118/348 (33%), Positives = 176/348 (50%), Gaps = 20/348 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++HVD D FFAAVE D P L+ +P A+G +GV++T NY ARKFG RS M +A Sbjct: 118 TVVHVDCDAFFAAVEELDRPELKHLPFAVG-----KGVLTTCNYVARKFGCRSGMAGFVA 172 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS-VHCHGSATL 121 KLCP L +P ++ Y + IR IF++Y E S+DEAYL++T + Sbjct: 173 KKLCPDLICIPQNYEKYSAKAEEIRAIFAQYDPCFESASIDEAYLNITAYCDENNMDPQE 232 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT--PAEVPAFLQTLPLA 179 Q++R I E ++T SAG+A LAKIAS+ NKPNGQ+ I + +F++ LP+ Sbjct: 233 AVQQMRARIAEETKITVSAGIATNTKLAKIASNQNKPNGQYFIPSEREAIMSFVKDLPVR 292 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNS-- 236 K+ G+G+V +L A+G+ TCG + +L + F GK + L + G+ + Sbjct: 293 KVNGIGRVFERELRAVGIETCGQIYP-QRALLKRLFGGKAFQFLMQCYLGLGRTKIQPAE 351 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 + RKSVG E T AE I + EL + LA + +K+K F+ Sbjct: 352 DYERKSVGTESTFAE-ISDPDAIRVKLRWAADELAKDLA--RTQFKGRTLVLKVKLHTFE 408 Query: 297 QTTQEHVWPRLN--KADLIATARKT---WDERRGGRGVRLVGLHVTLL 339 T++ P+ DL + + +RL+GL T L Sbjct: 409 VYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHL 456 >UniRef50_A9UNE7 GH11153p (Fragment) n=8 Tax=Drosophila RepID=A9UNE7_DROME Length = 1012 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 115/409 (28%), Positives = 192/409 (46%), Gaps = 66/409 (16%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--------------------- 40 R ++H+DMDCFF +V +R P LR +PIA+ S+ Sbjct: 290 RYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELELFAQR 349 Query: 41 --------------------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPG 74 I++ +Y AR+ G+R+ M G ALKLCP L +P Sbjct: 350 FEHHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPY 409 Query: 75 RFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSATLIAQEIRQTIFNE 133 F+ YKE + + + ++YT IE +S DE ++++TD H + +RQ ++++ Sbjct: 410 DFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSK 469 Query: 134 LQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVPAFLQTLPLAKIPGVGKVSAAKL 192 SAGVA K LA++A+ KPNGQF++ + ++ A++ + L +PGVG + KL Sbjct: 470 TGCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKL 529 Query: 193 EAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAE 251 + GL CGDVQ L + K G K G+ L++ +GID+R + E++RK+V E Sbjct: 530 KQAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGI 589 Query: 252 DIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH----VWPRL 307 + ECE + +L E+ +RL +++ + ++ + T ++ V + Sbjct: 590 RFTNSVECEQFLCQLSEEVTKRLVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDII 649 Query: 308 NKADLIATA------------RKTWDERRGGRGVRLVGLHVTLLDPQME 344 NK+ LI A D +R +G+H+T L+ E Sbjct: 650 NKSSLIKYATDDVNVITTVVLDLMKDADIPPDELRGLGIHLTRLEDANE 698 >UniRef50_D0NDK9 DNA repair protein REV1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NDK9_PHYIN Length = 943 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 106/359 (29%), Positives = 166/359 (46%), Gaps = 25/359 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+HVDMDCFF AV +RD P L+D+P+A+ S IS+ NY AR GV + M Sbjct: 255 RVILHVDMDCFFVAVAVRDKPELQDVPVAVAHSSNAGSSEISSCNYSARAKGVGAGMFMQ 314 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L +LP +FD + S I +IF +T ++ +S DEA+L+ Sbjct: 315 TAKELCPELIVLPYQFDDIQRVSFQIYDIFFSHTPYVQAVSCDEAFLEFEKGTK----GM 370 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT-PAEVPAFLQTLPLA 179 A IRQ IF + AS GV+ LAK++S KP+G + I+ P++ F+ L + Sbjct: 371 EKANAIRQEIFEQTGCPASVGVSFNILLAKLSSKKAKPDGVYAISDPSQAKEFMLQLKVR 430 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDV--NS 236 +PG G ++AAKLEA+G+ + L++ GK G L+ ++G+D R + S Sbjct: 431 DLPGAGHMTAAKLEALGVEDARQLVSMTRTELVQSLGKAAGERLFNYARGVDMRPLSMES 490 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF---- 292 +RKSV W + + L EL RL +K +K + Sbjct: 491 NMMRKSVSAVVNFGIRFDKWEDATVFLMALGEELSHRLRNLKVRTKCLTLLIKKRAEGAP 550 Query: 293 ---DDF------QQTTQEHVWPRLNKADLI--ATARKTWDER-RGGRGVRLVGLHVTLL 339 F ++ + + +++ + + +R VG+ T L Sbjct: 551 IEPSKFMGHGVCDNFSKSQILAQPTDDEVVIGKACIELLRQLNFPSEDLRGVGVQATKL 609 >UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RF31_9FIRM Length = 413 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 174/356 (48%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ +A +E P LR++ +A+GGS R R G+I N A++ GV++ Sbjct: 3 RVILHSDINHCYAQIEEMKFPQLREVCMAVGGSERSRHGIILAKNDKAKECGVKTGESLR 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L ++P ++ Y S ++EI+ Y+ ++E LDEA++DV++S GS Sbjct: 63 EAFVKCPQLCIIPPNYEEYVYYSEKVKEIYQAYSDKVESFGLDEAWIDVSESTKLFGSGY 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EI++ + +EL L+ S G++ K AK+ SDM K G IT L LP+ Sbjct: 123 EIATEIQKRVKDELGLSVSIGISYNKVFAKMGSDMKKNMGLVEITRTNFRDMLWPLPIEH 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VGK +A KL + T G++ + V L + FGK G ++W + G D +V N + Sbjct: 183 LFYVGKATAKKLRQYSIVTIGELAQLPRVWLKEHFGKMGELVWWFANGQDISEVAFHNQK 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KS+G T D+ + E + + L + RL + + ++ K+ + Sbjct: 243 EEVKSIGNGITTPRDLCTFEEAKIVFYVLAESVASRLREQGLQGNVISISLRNKY--LES 300 Query: 298 TTQEHVWPRLNK--ADLIATARKTWDERRGGR-GVRLVGLHVTLLDP-QMERQLVL 349 T++ + ++++ E +R V + ++ + + RQL L Sbjct: 301 ITRQCKIDKATNLASEIMEHILLLLKENYDFHIPLRSVAVSISGIQYMECYRQLNL 356 >UniRef50_B6Q7Y5 DNA-directed polymerase kappa, putative n=2 Tax=Leotiomyceta RepID=B6Q7Y5_PENMQ Length = 647 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 118/348 (33%), Positives = 173/348 (49%), Gaps = 20/348 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++HVD D FFAAVE D P L+ +P+A+G +GV++T NY ARKFG RS M +A Sbjct: 116 IVVHVDCDAFFAAVEELDRPELKHLPMAVG-----KGVLTTCNYVARKFGCRSGMAGFVA 170 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS-VHCHGSATL 121 KLCP L +P ++ Y + IR IF Y E S+DEAYL++T Sbjct: 171 KKLCPDLICIPQNYEKYTAKAEEIRAIFVEYDPCFESASIDEAYLNITAYCDENDMDPQE 230 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT--PAEVPAFLQTLPLA 179 Q++R I +E ++T SAG+A LAKIAS+ NKPNGQF I + AF++ LP+ Sbjct: 231 AVQQMRSRIADETKITVSAGIAANTKLAKIASNQNKPNGQFYIPSEREAIMAFVKDLPVR 290 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQ-GIDERDVNS-- 236 K+ G+G+V +L A+G+ TCG + L + FG+ + G+ + Sbjct: 291 KVNGIGRVFERELRAIGIETCGQIYPH-RASLKRLFGEKAFHFLMQCHLGLGRTKIQPAV 349 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 + RKSVG E T +E I A + EL R L+ + +K+K F+ Sbjct: 350 DYERKSVGTESTFSE-ISDPDAIRAKLRWAADELARDLS--RTQFKGRTLVLKIKLHTFE 406 Query: 297 QTTQEHVWPRLN--KADLIATARKT---WDERRGGRGVRLVGLHVTLL 339 T++ P+ DL + + +RL+GL T L Sbjct: 407 VYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHL 454 >UniRef50_B7QCT1 Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ixodes scapularis RepID=B7QCT1_IXOSC Length = 904 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 172/392 (43%), Gaps = 47/392 (11%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR----------------------- 38 + ++H+DMDCFF +V +R P L+ P+A+ + Sbjct: 257 KVLMHIDMDCFFVSVGLRSRPHLKGKPVAVCHGKNGGIQPSSSHSRASDVPGTSGSGADG 316 Query: 39 ------GVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSR 92 +++ +Y AR GVRS M G A +LCP+L +P F++Y E S + + + Sbjct: 317 KGLMSMSEVASCSYEARDAGVRSGMFLGRAKQLCPNLVAIPYEFESYSEVSKILYDTVAS 376 Query: 93 YTSRIEPLSLDEAYLDVTD-SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKI 151 YT IE +S DE Y DVT + A +R+ I + TAS G+ P A++ Sbjct: 377 YTLDIEAVSCDELYADVTKVLQEAECTPNDFASFLRKEIEEKTCCTASVGLGPNMLAARV 436 Query: 152 ASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVML 211 A+ KPNG ++ +E+ F + + + +PGVG ++L MG+ TC +Q + L Sbjct: 437 ANRSAKPNGHRFVSTSELLEFFKAVAVKHLPGVGYRLQSQLTDMGIETCEQLQAVSMETL 496 Query: 212 LKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPEL 270 +FG K G +L++ ++G D++ + ++RKSV E ++ I +L E+ Sbjct: 497 KSKFGVKTGTLLFQHARGSDDKVLQFNKVRKSVSAEVNYGIRFKEANDMNKFIGQLSEEV 556 Query: 271 ERRLAKVKPDLLIARQGVKLK---------------FDDFQQTTQEHVWPRLNKADLIAT 315 E+RL + +K++ D + + + + A + Sbjct: 557 EKRLREAGVQGRAVSLKLKVRQKDAPLNPTKFMGHGMCDNITKSVQLLAATSSAAAISRE 616 Query: 316 ARKTWDE-RRGGRGVRLVGLHVTLLDPQMERQ 346 + +R VG+ V L+P+ Q Sbjct: 617 CCNLAAQLHLVPSDIRGVGIQVGRLEPRPGVQ 648 >UniRef50_C1DYT2 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1DYT2_9CHLO Length = 306 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 19/306 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMDCFFA+V P L +P+A+ S G +S+ NY AR G R+ M Sbjct: 3 RVILHVDMDCFFASVAALGRPELAGLPVAVSWSSAGGGELSSCNYLARNAGCRAGMRIAR 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HGSAT 120 A +LCP+L ++P F+ Y + + + + +S+DEAY+DVT C + Sbjct: 63 AKELCPNLIVMPYEFERYSAVAIDVYRTLHELSPHVMGVSVDEAYVDVTGLAACGRKTPR 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+++R IF + AS G P + +A++A+ KP+G + + +FL ++P+A+ Sbjct: 123 EIAEDVRAKIFAKTGCVASVGSGPNRLIARLATKRAKPDGSHHVPASNASSFLASMPVAE 182 Query: 181 IPGVGKVSAAKLEAMGL---------------RTCGDVQKCDLVMLLKRFG-KFGRILWE 224 +PGVG+ + KL G+ TC DV L +L + G K G L + Sbjct: 183 LPGVGRGTLEKLRREGIGSMVGAVGPMGTAGNPTCADVAAAPLSVLRRALGPKAGAQLRD 242 Query: 225 RSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIA 284 S+GID R + RKSVG + T +E A +E+L E+ R+ +++ Sbjct: 243 ASRGIDARAWEARPPRKSVGAQVTWGVRFEEAAEAVAFVEKLCAEVSERMRRLRVKGR-- 300 Query: 285 RQGVKL 290 +K+ Sbjct: 301 TLTLKI 306 >UniRef50_B5BUV5 DNA polymerase kappa n=2 Tax=Agaricales RepID=B5BUV5_COPCI Length = 707 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 127/336 (37%), Positives = 187/336 (55%), Gaps = 21/336 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+A VE+ +P+L+ P A+G RGV+STA+Y ARK+GVRS M + Sbjct: 106 IVHVDMDAFYANVEILRDPSLKGKPFAVG-----RGVMSTASYEARKYGVRSGMAGFIGK 160 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLI 122 KLCP L +P FD Y + S I IF RY + P +DEAYL+VT HG + + Sbjct: 161 KLCPQLIFVPAHFDLYSKTSAQIMSIFRRYDPTMCPAGVDEAYLNVTAYCKQHGKTVDEV 220 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPLAK 180 E+R+ +F+E QLT SAG+AP K LAKI SD NKPNGQF + P + AF+ +L + K Sbjct: 221 VSEMRKAVFDETQLTVSAGIAPNKMLAKICSDKNKPNGQFKLEFEPDSIKAFMHSLSIRK 280 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCD--LVMLLKRFGKFGRILWERSQGIDERDVNS-- 236 +PGVG+V+ L+++G+RTCGD+ + + ++ KRFG L GI V Sbjct: 281 VPGVGRVNERLLDSIGIRTCGDIYQQRGVIALMDKRFGL--DFLLRVYLGIASNHVAPHA 338 Query: 237 ERLRKSVGVERTMAEDIHHWSECE----AIIERLYPELERRLAKVKPDLLIA-RQGVKLK 291 RKS+G ERT + + ++ + AI+ +L E + +K + + +K K Sbjct: 339 REERKSIGAERTFSTLDSNHADPKKGSVAIVAKLEEVAEELVEDMKREGWVGKTVTLKYK 398 Query: 292 FDDFQQTTQEHVWPR--LNKADLIATARKTWDERRG 325 D +Q T+ + + K +L T ++ R Sbjct: 399 LDTYQTFTRAKQFSKWITTKEELFNTGKELLLSRFP 434 >UniRef50_B1AJ79 DNA polymerase IV n=15 Tax=Ureaplasma RepID=DPO4_UREP2 Length = 360 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 187/354 (52%), Gaps = 8/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I+H+D+D F+A V +P ++ PIA+G R G+IS+ NY AR +GV++AMP + Sbjct: 7 KIIMHLDIDAFYATVSELLHPEYKNFPIAVGSLNSRTGIISSPNYLARSYGVKAAMPIFL 66 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSAT 120 A +LCP+L +LP + Y+ S H +I ++YT++IE S+DE ++D TD V H + Sbjct: 67 AKELCPNLIILPSEHNIYQSYSKHFFQIINKYTNKIEITSIDECFIDATDLVKKYHNNIR 126 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A +I++ I N+L L+ S G++ K +AK+A+++NKP+G +I ++ + L + K Sbjct: 127 LLATKIQKEIKNKLNLSISIGISYNKTIAKMATELNKPSGISIIDENKIINLIYELNINK 186 Query: 181 IPGVGKVSAAKLEAMGLRTCGDV-QKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 IP +G++ + +L A+ + ++ + + G + L +G+ + + E + Sbjct: 187 IPYIGEIKSQELYAINIFKIKELIATENKQKISLVLGSIYQNLVNDLKGLSKIKIIDEDI 246 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 K++ +T ED++ + E + L + RL K +L+ + +K+ F+ Sbjct: 247 YKTISHSKTFNEDLNDFYEISNEMNDLILTVTNRLKKC--NLMTNNISIYIKYPSFKTKI 304 Query: 300 QEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQM--ERQLVL 349 ++ + + + +RL+G+ + L + ++QL L Sbjct: 305 KQKQLTYYTDDYQTIFLAIKNLFKIMYKDETIRLIGISLNKLVKKENVKKQLFL 358 >UniRef50_O74944 DNA polymerase kappa n=1 Tax=Schizosaccharomyces pombe RepID=POLK_SCHPO Length = 547 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 189/354 (53%), Gaps = 22/354 (6%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVD D F+A++E NP L+ +P+A+G + V+ TANY ARKFGVRSAMP +A Sbjct: 131 IIVHVDCDAFYASIEELKNPKLKSLPMAVG-----KSVLCTANYVARKFGVRSAMPEFIA 185 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA--- 119 K+CP L ++P Y S I+ + ++Y S + P S+DE Y+++T + A Sbjct: 186 RKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQELAFTV 245 Query: 120 ---TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQ 174 T++ ++IR+ + E +T S G+A K LAKIAS+ KPN QF I E + F+ Sbjct: 246 ENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMN 305 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERD 233 LP+ ++ G+G+V +L + ++TCGD+Q+ +LV+L F K + L S G Sbjct: 306 DLPVREVSGIGRVLEQQLLGLEIKTCGDIQR-NLVILSYIFLPKSFQNLLRCSYGFGTTI 364 Query: 234 VNS--ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 ++ E RK++G E T + ++ S E + L + L K L+ +K K Sbjct: 365 LDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQ--KRGLVTNSIAIKYK 422 Query: 292 FDDFQQTTQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM 343 +FQ T++ + +++DL+ A + + +RL+G+ T L + Sbjct: 423 TSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYP-MTIRLLGVRATKLVSKS 475 >UniRef50_B2AY86 Predicted CDS Pa_1_10240 n=3 Tax=Sordariomycetes RepID=B2AY86_PODAN Length = 1122 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 104/377 (27%), Positives = 160/377 (42%), Gaps = 40/377 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF A+ ++ P D P + I++ NYPARKFGV++ M Sbjct: 342 RYILHVDFDSFFCAISLQKCPEYADKPTVVAHGSGTGSEIASCNYPARKFGVKNGMWMKR 401 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 AL+LCP L +LP F Y++AS ++ ++ +S+DEA +DVTD V Sbjct: 402 ALELCPGLKVLPYDFAGYEKASEVFYQVLLGVGGVVQSVSIDEALVDVTDVVLRGVGSTG 461 Query: 114 ---------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IA+ +R + S G+ LAK+A KP GQ I Sbjct: 462 VGVGEGSVCREQEKAEEIARGLRGEVRRRTGCEVSVGIGGNVLLAKVALRRAKPAGQHQI 521 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P EV + L + +PGV +LE MG+R D++ L+ G K G LW Sbjct: 522 RPEEVLDSIGELGVEGLPGVAGSIGGRLEEMGIRFVKDIRGTTRERLVSVLGPKTGERLW 581 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + ++G+D ++ + +RKSV + E E + L ELE+RL + + Sbjct: 582 DYARGVDRSELGEQPVRKSVSADVNWGIRFVSQEEAEEFVRNLCGELEKRL--LAEGVKG 639 Query: 284 ARQGVKL------------------KFDDFQQTTQEHVWPRLNKADLIATARKTWDERRG 325 VK+ K D F + + + + A + Sbjct: 640 KLLTVKIMRRSLDAPLDPAKHLGHGKCDTFNK-SASFGVATCDAEVIGKEAVGILRSYKF 698 Query: 326 GRG-VRLVGLHVTLLDP 341 G +R +G+ +T LD Sbjct: 699 SPGDLRGIGVQMTKLDH 715 >UniRef50_A8PXZ2 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PXZ2_MALGO Length = 525 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 188/364 (51%), Gaps = 27/364 (7%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H DMD F+AAVE++ P L A+G GV+ TA+Y AR+FGVRSAM + Sbjct: 40 RTILHCDMDMFYAAVELQRRPELAGACFAVGH-----GVLLTASYEARQFGVRSAMAEFV 94 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS--VHCHGSA 119 A +CP+L ++P D YK +S + + ++Y +++ SLDEAYLD+T H H Sbjct: 95 ARAICPNLIVVPAHMDVYKRSSEAVMAVLAKYDAQLYQRSLDEAYLDITSYCAEHGHAHP 154 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP--AEVPAFLQTLP 177 +A ++R + LT S G+AP + LAKIASD KPNG + + P + AF+ L Sbjct: 155 RDVAAQLRADVLAATGLTVSVGIAPNRLLAKIASDRCKPNGLWYVAPTRQDALAFMHDLS 214 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQ--KCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 + K+PG+G+V L+AM + TC D+ + +L + + + R+L + GI + V Sbjct: 215 VRKVPGIGQVMERMLQAMSIHTCHDLWERRIELSLCIDSY----RMLLASALGIGDAHVT 270 Query: 236 --SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 + R+SVG E T A + A + +LER LA + + + K D Sbjct: 271 LPARTARRSVGRELTFA-PTSDPTHLHAKLRATCEQLERDLATL--EYRGRTVSLVGKHD 327 Query: 294 DFQQTTQEHVWPR--LNKADLIATARKTWDERRGGRGV----RLVGLHVTLL-DPQMERQ 346 F++ T+ P+ + DL ++ R V RL+G+ V+ L D Q+ R Sbjct: 328 TFERFTRARACPQGVSSFDDLYGVVHALLEQERASFPVPLCLRLIGVRVSSLIDLQVARN 387 Query: 347 LVLG 350 VL Sbjct: 388 GVLA 391 >UniRef50_P63988 DNA polymerase IV 2 n=20 Tax=Corynebacterineae RepID=DPO42_MYCBO Length = 346 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 99/344 (28%), Positives = 164/344 (47%), Gaps = 12/344 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 R I+HVD+D F A+VE+ +P L +P+ +GG+ + R V++ A+Y AR +GVR+ MP Sbjct: 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A + CP T LP AY AS + + +E DEAYL V Sbjct: 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGT--PDD 124 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 +A+EIR+ I ++ L+ S G++ K AKIA+ + KP G + +T A A + + Sbjct: 125 PIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTV 184 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 + GVG + +L +G+ T + D +L+ FG + ++G + +V+++ Sbjct: 185 EALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQA 244 Query: 239 -LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAK-VKPDLLIARQGVKLKFDDFQ 296 + +S T D+ SE E+ + L R L + V + R V ++ F Sbjct: 245 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQ---RTLNEVVASSRTVTRVAVTVRTATFY 301 Query: 297 QTT--QEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTL 338 T ++ P + + A AR D R VRL+G+ + L Sbjct: 302 TRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 >UniRef50_C4G2M8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2M8_ABIDE Length = 414 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 178/371 (47%), Gaps = 29/371 (7%) Query: 2 RKIIHVDMDCFFAAV----EMRDNPA---LRDIPIAIGGS-RERRGVISTANYPARKFGV 53 + I HVD++ F + ++++ P LR IP AIGG +R GVI+ + PA+K GV Sbjct: 3 KLIFHVDVNSAFLSWTAVKKLKEEPESVDLRTIPSAIGGDVSKRHGVITACSIPAKKQGV 62 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 R+ P AL+ CP L L P F Y+E S EI +Y +E +S+DEAYLD+T + Sbjct: 63 RTGEPVMRALEKCPELQLFPSDFKTYREYSAKFIEILKKYALVVEQVSIDEAYLDMTGTD 122 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 +A++I+ I+ L T + G++ VK LAK+ASD KP + P E+ + Sbjct: 123 E----PVSMAEKIKAEIYESLGFTVNIGISTVKLLAKMASDFEKPYKVHTLFPKEIKEKM 178 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ K+ G G ++ KL +G++T GD D +L G K G + E S G Sbjct: 179 WKLPIEKLHGCGYRTSEKLRNIGVKTIGDAAALDKKLLCSLLGEKSGEYIHESSNGRGSD 238 Query: 233 DVNSERL-RKSVGVERTMAEDI---HHWSECEAIIERLYPELERRLAKVKPDLLIARQGV 288 V+ ER KS E T+ DI + E +I+ L + +RL K + V Sbjct: 239 IVSGEREAAKSYSNETTLPYDIRVSTYDKEMPEVIKWLSESVSKRLKKDGAEGY--TISV 296 Query: 289 KLKFDDFQQTTQEHVW--PRLNKADLIATARKTWDE--------RRGGRGVRLVGLHVTL 338 K F++ +++ N ++ + E G G+RLVG+ V+ Sbjct: 297 SAKTSSFKRRSKQTTLVESINNAKEIEKVSISLMKELCFGEKGLFEGDEGIRLVGVGVSH 356 Query: 339 LDPQMERQLVL 349 L +Q+ + Sbjct: 357 LAEHECKQMDI 367 >UniRef50_A4RF27 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4RF27_MAGGR Length = 1201 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 158/375 (42%), Gaps = 36/375 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF AV ++ P D P + I++ NYPAR+FGV++ M Sbjct: 384 RYIMHVDFDSFFCAVSLKTAPEYIDKPAVVAHGNGTGSEIASCNYPAREFGVKNGMWMKR 443 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 AL+LCP + +LP F AY++AS ++ +S+DEA +D+T V Sbjct: 444 ALELCPTIKVLPYDFPAYEDASRLFYGAILEIGGIVQSVSVDEALIDITTLVLEASSSSG 503 Query: 114 ---------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A +A ++R I S G+ P +AK+A KP GQ+ + Sbjct: 504 VGVDEGSVWREQEKANELAADLRAEIKRRTGCNVSIGMGPNILMAKVALRKAKPAGQYQV 563 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P E+ L L + +PGV KLE +G+R DV++ L G K G LW Sbjct: 564 KPEEILDILSGLKVEDLPGVAYSIKNKLEEVGVRLVKDVRELSRGRLTTILGPKTGERLW 623 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 E S+GID+ +V + +RKSV E E E + L ELE+RL Sbjct: 624 EYSRGIDKAEVGDQPMRKSVSAEVNWGIRFVSQPEAEEFVMNLCKELEKRLLSEGVKGKG 683 Query: 284 ARQGVKLKFDD----------------FQQTTQEHVWPRLNKADLIATARKTWDERRGGR 327 + + D F + + + + A Sbjct: 684 FTMKIMRRSLDSPLDPPKHLGHGKCDVFNK-SVAFGIATYSADFIGKEAVSILRSYNFAP 742 Query: 328 G-VRLVGLHVTLLDP 341 G +R +G+H++ L+P Sbjct: 743 GDLRGLGVHLSRLEP 757 >UniRef50_Q4P422 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P422_USTMA Length = 682 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 120/351 (34%), Positives = 183/351 (52%), Gaps = 20/351 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARK-FGVRSAMPTG 60 R I+H D+D F+AAVE+ +P+L+ +G GV+ TA+Y AR+ +GVRS M Sbjct: 146 RTILHTDIDMFYAAVELARDPSLKGKCFGVGS-----GVLVTASYEARRGYGVRSGMAVF 200 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA- 119 +A LCPHL ++ +Y +AS + IF +Y + SLDEAYLD+T+ V + S+ Sbjct: 201 VAKALCPHLIVVKNDMQSYVQASQKVMAIFEQYDENLAKASLDEAYLDITEYVEQNASSI 260 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQTLP 177 + Q++R + + QLT S G+AP LAKI+SD NKP+GQF I P + F++ LP Sbjct: 261 DQVVQQLRNQVRSHTQLTVSVGIAPNTMLAKISSDRNKPDGQFRIQPDRKVIVDFMRNLP 320 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS- 236 KIPG+G+V+ LE++G+ TCG++ + + L GK L + GI V Sbjct: 321 CRKIPGIGRVNERILESLGVTTCGEIWDKRVELWLSFDGKI-EWLIKAHLGIGNTVVEPS 379 Query: 237 -ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 RKSVG E T + +++ +E+ LA++ D + K D+F Sbjct: 380 KREERKSVGREHTFS-PTSDTKALLDLLKESAQRVEQDLARL--DFKAKTITLVAKRDNF 436 Query: 296 QQTTQEHVWPRL--NKADLIATARKTWD---ERRGGRGVRLVGLHVTLLDP 341 Q+ ++ RL +L ER G +RL+G+ VT L Sbjct: 437 QRFSRARTSTRLVHRAEELYDITSSLLMQEIEREGAISLRLIGVRVTQLVD 487 >UniRef50_B9XRF0 DNA polymerase III, alpha subunit n=1 Tax=bacterium Ellin514 RepID=B9XRF0_9BACT Length = 1420 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 117/341 (34%), Positives = 173/341 (50%), Gaps = 11/341 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+D D FFA+VE + LR +A+GG E+RG+I++A+Y ARKFGV + MPT Sbjct: 11 RAIVHLDADAFFASVEQAADARLRGKAMAVGG--EKRGIIASASYEARKFGVYTPMPTVR 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP L ++PG F+ Y+ S + +T +E S+DE Y D+T + S Sbjct: 69 ARKLCPKLIIVPGDFEKYERFSRWMFSYAYDFTPEVEISSIDEGYFDLTGARK---SPLE 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ IR I L++T S G+A K +++IAS +NKP + FL LP + Sbjct: 126 IAEIIRGAIRGALKITVSEGIACNKLVSQIASKLNKPAAFKQVPLGGEIPFLHPLPNKWL 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR- 240 PGVG +A KL A GL G + K L +L G R L E + GIDER + E Sbjct: 186 PGVGPTTATKLNAAGLIRIGHIAKTPLDLLQLLMGNMARSLKEFADGIDERPLIQESEPA 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF--QQT 298 KS G + T D EA ++R+ L ++ D I VK++++D Q Sbjct: 246 KSYGHQETFGVDQTDEEFIEATLKRMADSLMAQVR--ADDKTIRTLTVKVRYNDMAEDQA 303 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGR-GVRLVGLHVTL 338 + + P + D+ R + R +R+V L ++ Sbjct: 304 GESLLEPTDLETDIYGRIRVLMKQAWRRRVSLRMVSLRLSN 344 >UniRef50_A9A3A9 DNA polymerase IV n=6 Tax=Thaumarchaeota RepID=DPO4_NITMS Length = 364 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 104/356 (29%), Positives = 170/356 (47%), Gaps = 14/356 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG---VISTANYPARKFGVRSAMP 58 R + H+D D F+A E +P L+ P+ + +R G I+TANY ARK+G +S +P Sbjct: 4 RIVFHIDFDYFYAQCEEIRSPELKSKPVCVCVFSDRGGDSGAIATANYTARKYGAKSGIP 63 Query: 59 TGMALKL---CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH- 114 A K LP FD Y E S +I ++ E + DEAYLDVT Sbjct: 64 IVFAKKRLEERKDAVFLPVDFDYYSEMSEKAMKIMEEFSDVFEYVGRDEAYLDVTKRTEG 123 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 A+ +AQ+I+ +I + +L+ S G++P K ++KIASD KP+G +++P +V FL+ Sbjct: 124 DFHKASHLAQQIKNSIREKTKLSCSIGISPNKLISKIASDFQKPDGLTIVSPEKVEGFLE 183 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERD 233 +L + IPG+GK + + M L T GDV++ D+ L K FG K G ++ +GID+ Sbjct: 184 SLKIRDIPGIGKKTEQRFTEMNLETIGDVKRLDVFTLNKEFGRKSGTYIYNAVRGIDDEL 243 Query: 234 VNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 V G T+ +D + L E+ + K + + G+ Sbjct: 244 VKEREPSIQHGKIVTLKKDSKDYEFLLENTLELCKEVHEIIQ--KKNQMFKSVGISFVQS 301 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRGGR--GVRLVGLHVTLLDPQMER 345 D T+ + P ++ +L T + E + +R +G+ V+ L + Sbjct: 302 DLSNKTKSKMLRNPTMSLEELEKTVEQLLREALENQTATIRRLGVKVSELSESQGQ 357 >UniRef50_Q5K8U2 Putative uncharacterized protein n=3 Tax=Agaricomycotina RepID=Q5K8U2_CRYNE Length = 658 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 123/348 (35%), Positives = 190/348 (54%), Gaps = 27/348 (7%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 IIHVDMD F+A+VE++ +P+L+ +G +GV+ TA+Y ARKFGVRSAM +A Sbjct: 220 TIIHVDMDAFYASVEVQRDPSLKGKAFGVG-----KGVLCTASYEARKFGVRSAMAGFIA 274 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATL 121 KLCPH+ L FD Y +AS ++E+ +Y + SLDE YL++T + H +A+ Sbjct: 275 KKLCPHIILTDLHFDLYTKASKAVKEVLVQYDENLMMASLDEGYLNITPYMSTHNMTASE 334 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPLA 179 + EIR + + LT SAG+A + LAKI SD NKPNG F + A + F++ LP+ Sbjct: 335 VVTEIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGHFELAFDRATIVRFMRDLPVR 394 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDV--QKCDLVMLLKRFGKFGRILWERSQGIDERDVNS- 236 IPG G+V+ LE +G++TCGD+ ++ DL+++ FG G L GI + V Sbjct: 395 NIPGFGRVTERCLEGLGIQTCGDIYEKRVDLLLMDHWFGFRG--LCRAYLGIADNTVAPG 452 Query: 237 -ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 R+SVGVERT D + A + + EL + L +++ VK K Sbjct: 453 RREERRSVGVERTF-RDKTDDEDIMATLIDIVEELGKDLDRLQYAG--KTVTVKYK---- 505 Query: 296 QQTTQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDP 341 T+ P+ + D++ A++ + R +RL+G+ ++ L Sbjct: 506 ---TRAKSIPKYISSATDILPIAQELLKKELPLR-IRLLGVRLSTLKD 549 >UniRef50_A9NFG9 DNA polymerase IV n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFG9_ACHLI Length = 383 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 109/357 (30%), Positives = 170/357 (47%), Gaps = 10/357 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGG-SRERRGVISTANYPARKFGVRSAMPTG 60 + I H+D++ F+A M P L+ +GG S + RGV+STA+Y ARK+G+ + M Sbjct: 20 KVIFHIDLNAFYATCAMIKEPHLKHRVFVVGGQSSQPRGVVSTASYKARKYGIHAGMSML 79 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 AL P L ++P F Y+E SN E+ Y+ + S+DEA+LD+T + Sbjct: 80 DALNKFPRLLIVPVDFKFYREMSNKFMEVLDAYSDLVLQASIDEAFLDMTKASE-EIHPI 138 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A++I++ + ++ QL S G+AP FLAK+ASDM KP G V+ +V L L + Sbjct: 139 KLAKKIQKELVDKYQLPTSIGIAPTLFLAKMASDMKKPLGITVLRKRDVEKLLYPLSVTD 198 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCD-LVMLLKRFG-KFGRILWERSQGIDERDVNSE- 237 I G+GK + KL A+G+ T D L + + + E G V+ + Sbjct: 199 IYGIGKQTYPKLMALGINTIKDFMDLSNLPKITRVMKEETYYSFREYILGNSSNVVDPDK 258 Query: 238 -RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 RL KS+ E T ++ S II E RL K ++L G KLK DF+ Sbjct: 259 YRLPKSISAETTFNTNMDEPSVILDIIMSQLDESLVRLK--KYNMLTKTVGFKLKSSDFK 316 Query: 297 QTTQEHVW-PRLNKADLIATARKTWDERRGGRGV-RLVGLHVTLLDPQMERQLVLGL 351 T+ N ++I + E G+ RL G ++ L + ++ L Sbjct: 317 SITRSKTLEDYTNDPEIIKYELTSLFENEFEGGIYRLAGASLSNLILHSDNEIPFNL 373 >UniRef50_C7MBE5 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBE5_BRAFD Length = 422 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 171/343 (49%), Gaps = 6/343 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFA++E+RD+P L +P+ G RGV++ A+YPAR G+RSAMP A Sbjct: 16 ILHLDMDAFFASIEVRDDPGLEGLPVV-VGGAGARGVVAAASYPARTRGIRSAMPMASAR 74 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +L P L ++P R D Y++ S + ++ + E +S+DEA+LDV + G IA Sbjct: 75 RLAPDLVIVPPRIDHYRQVSAQVMQLLGDVVAETEQISVDEAFLDVRGARRLFGPPEQIA 134 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 Q +R+ I EL L +S G + + +AKIAS KP+G ++ FL L +A I G Sbjct: 135 QLLRRRIREELGLPSSVGGSVSRAVAKIASAQAKPDGMLIVPAERTAEFLAPLSVAVISG 194 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG + L +G+RT G +++ L + G + + G D + +S+ Sbjct: 195 VGPKAQEALARIGVRTIGQLREIPRSTLARALGPRAPEIAALADGSDRTGLGHRARDRSL 254 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G ERT ED+ E I + ++ R+L + + +KL+ D T+ Sbjct: 255 GTERTWDEDLTDPDEVRRRITTMADDVARQLR--RSGFVARTVVLKLRAPDGTTLTRSST 312 Query: 304 W--PRLNKADLIATARKTWDERRGGRG-VRLVGLHVTLLDPQM 343 P + L + W+ R +RL G+ V+ L+P Sbjct: 313 MDQPTASGERLRSQVIPLWERERPAMPRLRLAGVRVSHLEPGE 355 >UniRef50_UPI000180D06B PREDICTED: similar to GH15415 n=1 Tax=Ciona intestinalis RepID=UPI000180D06B Length = 593 Score = 294 bits (753), Expect = 4e-78, Method: Composition-based stats. Identities = 104/331 (31%), Positives = 157/331 (47%), Gaps = 61/331 (18%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIA------------------------------- 30 + I+H+DMDCFF +V + P L+ P+A Sbjct: 263 KVIMHIDMDCFFVSVGLLSRPHLKGRPVAVTHHSSSTPSEHKQRPGTDPNFERSYYKEKL 322 Query: 31 ------------IGGSRERRG----------------VISTANYPARKFGVRSAMPTGMA 62 +G S G I++ +Y AR G+R+ M G A Sbjct: 323 GKNFEQKFPSNPVGPSNPSDGQASGSASKANTVPSYSEIASCSYEARAAGLRNGMFYGRA 382 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATL 121 +LCP L +P F+AYK+ S + + + YT +E +S DEA LDVT V + + Sbjct: 383 KELCPDLIAIPYDFEAYKDISQKLYTVLASYTQSLEAVSCDEALLDVTQLVEDTSLTPQV 442 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ IR I + ASAG+ P LA++A+ + KPNGQ +T + F++ LP+ + Sbjct: 443 IAQNIRGKILDATGCNASAGIGPNIALARMATRLGKPNGQHEVTLQQAEEFIRDLPVKDL 502 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PGVG+ +A++L +G TCG++QK +L K FG K G+ L E S+GIDER+V + R Sbjct: 503 PGVGRATASRLRELGASTCGELQKIHPDLLKKEFGNKTGQKLHELSKGIDEREVCQSKER 562 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELE 271 KSV + + E + + L E+ Sbjct: 563 KSVSADVNYGIRLKTEDEMKTFLNNLSNEVS 593 >UniRef50_A0D236 Chromosome undetermined scaffold_35, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0D236_PARTE Length = 591 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 106/350 (30%), Positives = 174/350 (49%), Gaps = 13/350 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R H DMD F+ A E+ D P L+D P+A+G + ++STANY ARKFGVRSAMP + Sbjct: 86 RIWAHFDMDMFYVACELLDKPELKDKPVAVGQT-----IVSTANYVARKFGVRSAMPGFV 140 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSAT 120 A KLCP + +P F+ YK SN I +Y +E + LDEA LD+T+ + + Sbjct: 141 AKKLCPEIIFIPCHFEKYKSVSNIFMTILKKYDDNLESMGLDEANLDLTEYINNSQEDPA 200 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA--EVPAFLQTLPL 178 ++ + IR+ I QLTAS GV P K +AK+AS++NKPNG V+ + V FL+ LP+ Sbjct: 201 ILCENIRKDILLATQLTASCGVGPNKMIAKLASEINKPNGLHVVEQSATAVLNFLEKLPI 260 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 KIPG+G ++ L + TC DV+ + + K ++ G+ Sbjct: 261 RKIPGIGNITEQILSGLNFNTCKDVRDRADELYVIFTPKTFEYIFYSCWGVARNYHVEFE 320 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 + S+ +RT + I E E ++ + +L + + + + +K F+ Sbjct: 321 DQHSISCQRTFSS-ISTQREFEDKVDYIAEKLAEEMQS--EEKVGNHLTLIIKTSKFEIR 377 Query: 299 TQEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQ 346 ++ + + ++ + +RL+GL ++ L + + Q Sbjct: 378 SKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLKMSSLANEKQIQ 427 >UniRef50_D2VFM3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VFM3_NAEGR Length = 888 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 101/291 (34%), Positives = 163/291 (56%), Gaps = 5/291 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++H+DMDCFFA++ MRDNP+L++ PIA+ S + G IS+ANY AR FGVR+ M A Sbjct: 271 VVHIDMDCFFASIAMRDNPSLKNKPIAVSYSTDGTGDISSANYCARDFGVRAGMWMKQAR 330 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT--L 121 +LCP L ++P F+ Y EA++ I EI + + R++ +S+DEA++++T+ + + Sbjct: 331 ELCPDLIVVPYEFEKYNEAASKIDEILNSHCERVKIISIDEAFIEITNELKNNTVEELNE 390 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + +IR I E + TASAG++ + LA+IA+ KPNGQF + E +F++ L + +I Sbjct: 391 LVSKIRNEIERETKCTASAGMSTNQLLARIATKKAKPNGQFYLDAKEAVSFIENLNIEEI 450 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 P VG + M + C + L + G K G L+ +GID+R + R Sbjct: 451 PSVGWKTKKFFNQMSITKCSQLLSYSKTELKELVGEKKGETLYNFLRGIDKRPFFDDTGR 510 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 KSVGVE ++ I++L E+ RL ++ +K+K Sbjct: 511 KSVGVEVNYGIRFTKMAQVSEFIDKLSIEVTSRLK--NENVKGKAIVLKVK 559 >UniRef50_C7N9E0 DNA-directed DNA polymerase n=5 Tax=Fusobacteriaceae RepID=C7N9E0_LEPBD Length = 363 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 108/363 (29%), Positives = 178/363 (49%), Gaps = 21/363 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R +H DMD FFAA+E RDN LR PIAIG GV++TA+Y ARKFG++SAMPT Sbjct: 5 RIYLHYDMDAFFAAIEQRDNKELRGKPIAIGH-----GVVTTASYEARKFGIKSAMPTVQ 59 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---- 117 A +LCP L ++ R D Y E I+ + + E S+DE Y+D+T+ + Sbjct: 60 AKRLCPSLIVVSLRKDIYFEEGRRIQGLIKNILKKCEFTSVDEGYIDITEFIQNKNIKLD 119 Query: 118 ------SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVP 170 ++ +Q I++ +LT S G+ K AKIASD+NKPNG F+ Sbjct: 120 KRDEILKIERFIKKFKQYIYDNSKLTCSVGIGFSKISAKIASDINKPNGYFIFKNREHFL 179 Query: 171 AFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGI 229 ++ LA IPG+GK + L+ T + + + L++RFG G L+ +G+ Sbjct: 180 EYIYDKNLAIIPGIGKKTREVLKLFNTTTVFQLYEIEKNELIRRFGMSKGEYLYNTVRGL 239 Query: 230 DERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVK 289 ++N++R R+S G E T + + S +++ +L R+L ++ + VK Sbjct: 240 HFTEINTDRKRQSYGHEITFNREENDISIIYDELKKQSNKLSRKL--IEKNEFAKTVTVK 297 Query: 290 LKFDDFQQTTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 +++ +F T+ N+ + + + +RL+G+ ++ + QL Sbjct: 298 IRYSNFVTHTRSRTLENATNNENKIYEATLENLNFFEKKDEIRLIGVQLSSILKSNVVQL 357 Query: 348 VLG 350 Sbjct: 358 SFN 360 >UniRef50_Q7NAR2 UmuC/DinP-like n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAR2_MYCGA Length = 405 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 95/344 (27%), Positives = 165/344 (47%), Gaps = 8/344 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I H+D D FFA+VE NP + P+ +G + ++S+ANY ARKFGVRSAMP Sbjct: 11 KTIFHIDFDAFFASVEENFNPEYNNKPLVVGS-KSNGSIVSSANYIARKFGVRSAMPIFQ 69 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRY-TSRIEPLSLDEAYLDVTDSVH--CHGS 118 A KLCP L + + Y+ S ++ + ++++E S+DE Y+DVTD + S Sbjct: 70 AKKLCPSLIIAEVDYPKYERVSAYVFSYLRDFVSNKMEVASIDECYMDVTDILEKNSEIS 129 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A+ +A++I++ I+ QLT S G++ FLAK+ASD NKPNG + I P E+ L L + Sbjct: 130 ASDLAKKIQKQIYELTQLTVSIGISSNLFLAKMASDQNKPNGVYEIWPDEIEEKLWPLEI 189 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKC-DLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 K+ +G L + ++ G+ + + +L+ F + + G V+ E Sbjct: 190 KKMYLIGSKKIPLLNQLNIKNIGNFAQFENKELLIDIFKNMYWDHYNHAHGKGSDFVDYE 249 Query: 238 RL-RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R RKS+ V + + + + + L+ ++ RL +LL V ++ + + Sbjct: 250 RNSRKSISVSKNIRHKVSDYESLLKLFNDLFDDVYSRLK--NHNLLAKNISVSIRTEKVR 307 Query: 297 QTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD 340 + K A ++ + V + + + Sbjct: 308 SLSFSFKQYSDKKTLFYNKAIDLFERLHNNQLVANISISFGNIT 351 >UniRef50_C1E418 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E418_9CHLO Length = 410 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 127/338 (37%), Positives = 181/338 (53%), Gaps = 13/338 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IHVDMD FFAA + P L +P+A+GG +ISTANY ARK GVRSAMP + Sbjct: 81 RTWIHVDMDAFFAACHTLERPELASVPMAVGGM----SMISTANYVARKAGVRSAMPGFV 136 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGSAT 120 A+KLCP L + F+ Y++ + +RE++ Y + SLDEAYLDVT+ Sbjct: 137 AVKLCPALVFVRQDFELYQKYAAMLREVWRVYDKEFDCGSLDEAYLDVTEFMSRTGMDGG 196 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPL 178 +A ++R + + +LT SAGVAP + LAKI SD NKPNGQFV+ + V +FL LP+ Sbjct: 197 EVAAKLRSDVETKTRLTCSAGVAPTRRLAKICSDWNKPNGQFVLERSREAVISFLSDLPV 256 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNSE 237 K+ GVGKV KL A +RTCG +++ L ++ F L+ + G + Sbjct: 257 RKVGGVGKVLEGKLSAFQIRTCGQLRQ-SLNVIAAVFTPATIDFLFSVALGTGTEQRPPD 315 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 RK +G ERT A EA + L ++ + L K +L +K+K +F+ Sbjct: 316 AQRKGLGHERTFA-PTSDPRFIEAKLHGLAEDVAKELQ--KENLKAQTVTLKIKKSNFEV 372 Query: 298 TTQEHVWPRLNKADLIATARKTWDERRGGRG-VRLVGL 334 ++ P N A +IA A + G +RLVG+ Sbjct: 373 MQRQLTVPSSNAAKVIAEAAILLLRKERPYGALRLVGV 410 >UniRef50_B2A4V8 DNA-directed DNA polymerase n=5 Tax=Clostridia RepID=B2A4V8_NATTJ Length = 421 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 152/344 (44%), Gaps = 14/344 (4%) Query: 3 KIIHVDMDCFFAAVEMRDNP------ALRDIPIAIGGSRE-RRGVISTANYPAR-KFGVR 54 I H+D++ + + E LR +P +GG + RRG++ + PA+ KF ++ Sbjct: 5 IIFHIDVNSAYLSWEAAYRLQKGAQLDLRQVPSVVGGDSQKRRGIVLAKSIPAKSKFKIQ 64 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + A K CP L ++P +D Y SN + E+ Y+ I+ S+DE +LD T+ Sbjct: 65 TGELLSSARKKCPDLFVVPPNYDLYLRCSNAMVELLYEYSPFIQRYSVDEVFLDFTNMEK 124 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 G A I+ + EL T + G+ P K LAK+AS+ KP+ + P E+P L Sbjct: 125 QFGDYLTAANTIKARVKEELGFTVNIGIGPNKLLAKLASEFKKPDRVHTLFPEEIPTKLW 184 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP+ ++ VG+ + KL G+ T G++ K L G ++W+ + GI+E V Sbjct: 185 PLPVGELFMVGRATEKKLLDRGITTIGELAKTPRNKLKLWLKSHGLLIWDFANGIEESSV 244 Query: 235 NSERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 E K +G T E++ + L ++ RL + +K Sbjct: 245 RPEGFPMKGLGNSTTTPENVADKETARLWLLSLTEKVSSRLRDA--HCYAQVVNLSIKTS 302 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGL 334 F ++ P + + T +K +E +R +G+ Sbjct: 303 QFISYGKQKKLLNPTNSTKVIFETGKKLLNELWDEEEPLRHIGI 346 >UniRef50_Q8REB0 DNA polymerase IV n=8 Tax=Fusobacterium RepID=DPO4_FUSNN Length = 350 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 166/353 (47%), Gaps = 12/353 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H DMD F+A++E+ NP L++ P+ +G + +++TA+Y ARK+ + SAM Sbjct: 3 RIIMHYDMDAFYASIEINRNPKLKNKPLVVGEN-----IVTTASYEARKYDIHSAMKVSD 57 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCP L +LP Y SN I + + T+++E ++ DE Y+D+TD + Sbjct: 58 AKLLCPKLIVLPVDKTEYIRISNEIHNLILKITNKVEFVATDEGYIDLTDVIKPENK-KA 116 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNG-QFVITPAEVPAFLQTLPLAK 180 + +Q I LT S G+ K AKIASD+NKP G E + + Sbjct: 117 FVIKFKQRIKELTNLTCSVGIGFNKLSAKIASDINKPFGFFIFENEEEFIKHISDKKIKI 176 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERL 239 IPGVGK L+ + D+ K L L+K++GK G L+ +GID +V +R Sbjct: 177 IPGVGKKFFEILKNDKIFYVKDIFKYPLDYLVKKYGKSRGENLYCSVRGIDFDEVEYQRE 236 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 S+G E T + + SE L+ RL +K ++ +K+++ F+ T Sbjct: 237 IYSIGNEETFLIPLQNNSEIIREFNSLFEYTFERL--LKNNVFTQSITIKMRYTSFKTYT 294 Query: 300 QEHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 + ++ L + + VRL+G++ + QL L Sbjct: 295 KSKKLKFSTRSKDFLYNEMFELINSFEKEDEVRLLGVYFGDIKKSNLVQLALN 347 >UniRef50_C5CJ42 DNA-directed DNA polymerase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CJ42_KOSOT Length = 424 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 153/343 (44%), Gaps = 7/343 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I HVDMD FFA+VE NP L+ PI + G R V+ +A+Y A+K+GV++ MP A Sbjct: 41 YIAHVDMDAFFASVEQASNPYLKGKPIIVTGKDTRHSVVVSASYEAKKYGVKAGMPAFKA 100 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L++CP +P Y S I + + R S+DEA++D++ S + Sbjct: 101 LEICPKALFVPVDSGKYTYVSEEIMKRLEFISPRYSVASIDEAFIDLSVYHSLSDSINAL 160 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 + R +I ++ S GVA +AKIASD NKP G V+ AFLQ + ++++P Sbjct: 161 -KLFRTSIEKTFGISFSIGVAVNPLIAKIASDFNKPRGFVVVKEGSEKAFLQNVDISQVP 219 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK--FGRILWERSQGIDERDVNSERLR 240 G+G + KLE G + ++ + D L FG G + + + + Sbjct: 220 GIGPHTLMKLENFGFKKASELLEADEFFLYHNFGNSFLGLVKSLTVKNYPKELFFKKEPP 279 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ--T 298 KSVG T+ D++ E + L + R+ K + LK+ DF Sbjct: 280 KSVGHSMTLNHDVNSIELIERVASFLGAKAVYRMRKYGYQ--ARGTSLFLKYSDFSVARI 337 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP 341 T+ + L E G VR VG+ + L P Sbjct: 338 TRSLSFYISRPEHLNNVLYWLIREIWNGEAVRAVGVSLYKLKP 380 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 433 e-120 UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter... 433 e-120 UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_... 433 e-120 UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibri... 432 e-119 UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms Re... 431 e-119 UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria R... 429 e-118 UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4... 428 e-118 UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter... 427 e-118 UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobac... 427 e-118 UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alke... 426 e-118 UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatel... 424 e-117 UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidet... 424 e-117 UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. ... 422 e-117 UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_H... 422 e-116 UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 421 e-116 UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42... 420 e-116 UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 419 e-116 UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacter... 419 e-116 UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacte... 416 e-115 UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_C... 416 e-115 UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteob... 415 e-114 UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermo... 415 e-114 UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalob... 414 e-114 UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomy... 413 e-114 UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms R... 413 e-114 UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=u... 413 e-114 UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 413 e-114 UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q... 412 e-114 UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcu... 412 e-114 UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_... 412 e-114 UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=... 412 e-114 UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria Re... 411 e-113 UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaero... 411 e-113 UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteri... 410 e-113 UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicro... 410 e-113 UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae Rep... 409 e-113 UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus ... 409 e-113 UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_L... 409 e-112 UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=... 408 e-112 UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales R... 407 e-112 UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella c... 407 e-112 UniRef50_B0TQD1 DNA polymerase IV n=7 Tax=Bacteria RepID=DPO4_SHEHH 406 e-112 UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 154... 405 e-111 UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 404 e-111 UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychroph... 404 e-111 UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiri... 404 e-111 UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=... 403 e-111 UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=... 403 e-111 UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gam... 403 e-111 UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_P... 402 e-111 UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DP... 401 e-110 UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damag... 401 e-110 UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class... 400 e-110 UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermoth... 400 e-110 UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica... 400 e-110 UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 399 e-110 UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=... 399 e-110 UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomyceta... 397 e-109 UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 396 e-109 UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae b... 395 e-108 UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=... 394 e-108 UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdema... 394 e-108 UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_L... 393 e-108 UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospiri... 392 e-108 UniRef50_B0TZS5 DNA polymerase IV n=14 Tax=Francisella RepID=DPO... 392 e-107 UniRef50_A4BJD8 DNA polymerase IV n=1 Tax=Reinekea blandensis ME... 392 e-107 UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2... 391 e-107 UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2... 391 e-107 UniRef50_A0YE03 DNA polymerase IV n=2 Tax=Gammaproteobacteria Re... 390 e-107 UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collins... 390 e-107 UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomyceta... 389 e-107 UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales... 388 e-106 UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral t... 387 e-106 UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia ext... 387 e-106 UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis... 385 e-106 UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerof... 385 e-105 UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_... 385 e-105 UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class... 384 e-105 UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex de... 383 e-105 UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=D... 383 e-105 UniRef50_Q3II35 DNA polymerase IV n=3 Tax=Alteromonadales RepID=... 383 e-105 UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved i... 383 e-105 UniRef50_B6J224 DNA polymerase IV n=5 Tax=Coxiella burnetii RepI... 383 e-105 UniRef50_A3NBC4 DNA polymerase IV n=15 Tax=pseudomallei group Re... 383 e-105 UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli ... 383 e-105 UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonel... 382 e-105 UniRef50_D1JEL0 DNA polymerase IV n=1 Tax=uncultured archaeon Re... 382 e-105 UniRef50_C5BNY2 DNA polymerase IV n=1 Tax=Teredinibacter turnera... 382 e-104 UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiale... 381 e-104 UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO... 381 e-104 UniRef50_Q2LU75 DNA polymerase IV n=1 Tax=Syntrophus aciditrophi... 380 e-104 UniRef50_C5RD20 DNA-directed DNA polymerase n=1 Tax=Weissella pa... 380 e-104 UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus M... 379 e-104 UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclass... 379 e-104 UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia deni... 379 e-104 UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus... 378 e-103 UniRef50_A7REV5 Predicted protein (Fragment) n=1 Tax=Nematostell... 378 e-103 UniRef50_Q1N612 DNA polymerase IV n=1 Tax=Bermanella marisrubri ... 378 e-103 UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteob... 378 e-103 UniRef50_UPI0001982DE6 PREDICTED: hypothetical protein n=1 Tax=V... 377 e-103 UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella p... 377 e-103 UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium o... 377 e-103 UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved i... 376 e-103 UniRef50_B9HS71 Predicted protein n=1 Tax=Populus trichocarpa Re... 375 e-102 UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomyceta... 375 e-102 UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX... 374 e-102 UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=V... 374 e-102 UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranu... 373 e-102 UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved i... 373 e-102 UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_S... 372 e-102 UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiop... 372 e-101 UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacil... 372 e-101 UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomyceta... 371 e-101 UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobac... 371 e-101 UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostri... 371 e-101 UniRef50_A6DIV6 DNA polymerase IV n=1 Tax=Lentisphaera araneosa ... 371 e-101 UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_T... 370 e-101 UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaprote... 370 e-101 UniRef50_Q654Y6 Os06g0691000 protein n=7 Tax=Poaceae RepID=Q654Y... 369 e-100 UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteri... 368 e-100 UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0... 368 e-100 UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteri... 368 e-100 UniRef50_C0ZB00 DNA polymerase IV n=1 Tax=Brevibacillus brevis N... 368 e-100 UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia R... 367 e-100 UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DP... 367 e-100 UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicu... 367 e-100 UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ... 365 e-100 UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostri... 365 1e-99 UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobaci... 365 1e-99 UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Rosebur... 365 1e-99 UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevi... 365 2e-99 UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidete... 364 2e-99 UniRef50_B9X9L4 DNA-directed DNA polymerase n=3 Tax=Verrucomicro... 364 3e-99 UniRef50_B1MZW7 Nucleotidyltransferase/DNA polymerase involved i... 363 4e-99 UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9... 363 5e-99 UniRef50_C5JS23 DNA damage repair protein Mus42 n=2 Tax=Ajellomy... 363 5e-99 UniRef50_Q2L7B2 REV1 n=7 Tax=Sordariomycetes RepID=Q2L7B2_NEUCR 363 6e-99 UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2... 362 1e-98 UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax... 362 1e-98 UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealy... 361 2e-98 UniRef50_C0S277 DNA polymerase IV n=5 Tax=Onygenales RepID=C0S27... 361 2e-98 UniRef50_A3EWL3 Polymerase ATREV1-1105 n=8 Tax=rosids RepID=A3EW... 361 2e-98 UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter h... 360 5e-98 UniRef50_C3Y6K1 Putative uncharacterized protein (Fragment) n=1 ... 359 1e-97 UniRef50_B3WC63 DNA-damage-inducible protein P n=8 Tax=Lactobaci... 358 1e-97 UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutyl... 358 1e-97 UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothri... 358 1e-97 UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collins... 357 3e-97 UniRef50_C8V695 Deoxycytidyl transferase (Eurofung) n=2 Tax=Emer... 357 5e-97 UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved i... 356 6e-97 UniRef50_UPI000180C22E PREDICTED: similar to polymerase (DNA dir... 356 8e-97 UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesti... 356 8e-97 UniRef50_Q9UBZ9 DNA repair protein REV1 n=27 Tax=Tetrapoda RepID... 356 9e-97 UniRef50_A2QTI4 Contig An09c0050, complete genome n=9 Tax=Euroti... 355 1e-96 UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacte... 355 1e-96 UniRef50_B0MAH2 Putative uncharacterized protein n=1 Tax=Anaeros... 355 2e-96 UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A... 354 2e-96 UniRef50_D1BHR1 Nucleotidyltransferase/DNA polymerase involved i... 354 3e-96 UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidoba... 354 3e-96 UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 352 8e-96 UniRef50_C3PHE2 DNA polymerase IV n=10 Tax=Corynebacterineae Rep... 352 2e-95 UniRef50_A9BNM1 DNA-directed DNA polymerase n=34 Tax=Betaproteob... 352 2e-95 UniRef50_Q47E66 UMUC-like DNA-repair protein n=2 Tax=Betaproteob... 351 3e-95 UniRef50_D2A3T9 Putative uncharacterized protein GLEAN_14950 n=1... 350 4e-95 UniRef50_B2VS10 DNA polymerase IV n=3 Tax=Pleosporineae RepID=B2... 350 5e-95 UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_... 350 5e-95 UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaeroc... 350 6e-95 UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimal... 349 8e-95 UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus... 349 1e-94 UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42... 348 1e-94 UniRef50_B7AQS7 Putative uncharacterized protein n=1 Tax=Bactero... 348 1e-94 UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bi... 348 2e-94 UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria Re... 348 2e-94 UniRef50_UPI0001C32444 DNA-directed DNA polymerase n=1 Tax=Conex... 347 3e-94 UniRef50_UPI00016E76F4 UPI00016E76F4 related cluster n=1 Tax=Tak... 347 3e-94 UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteri... 347 3e-94 UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=... 346 8e-94 UniRef50_C2FXW7 Possible DNA-directed DNA polymerase n=2 Tax=Sph... 346 1e-93 UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttle... 345 1e-93 UniRef50_Q8TIW3 DNA polymerase IV n=4 Tax=Methanosarcinaceae Rep... 345 1e-93 UniRef50_D1Y4D1 DNA polymerase IV n=1 Tax=Pyramidobacter piscole... 345 1e-93 UniRef50_C4LI62 DNA polymerase IV n=1 Tax=Corynebacterium kroppe... 345 1e-93 UniRef50_A4VCZ3 DNA polymerase IV / kappa n=1 Tax=Tetrahymena th... 345 2e-93 UniRef50_A7E7M1 Putative uncharacterized protein n=2 Tax=Sclerot... 345 2e-93 UniRef50_B6Q3Z2 DNA damage repair protein Mus42, putative n=5 Ta... 345 2e-93 UniRef50_UPI000186DDA3 terminal deoxycytidyl transferase rev1, p... 344 3e-93 UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium s... 344 3e-93 UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiale... 343 4e-93 UniRef50_D2R9L6 ImpB/MucB/SamB family protein n=1 Tax=Gardnerell... 342 1e-92 UniRef50_Q2HFL9 Putative uncharacterized protein n=1 Tax=Chaetom... 342 2e-92 UniRef50_D1HMR5 Whole genome shotgun sequence of line PN40024, s... 341 2e-92 UniRef50_Q03R40 Nucleotidyltransferase/DNA polymerase for DNA re... 341 2e-92 UniRef50_B4MLB6 GK17515 n=1 Tax=Drosophila willistoni RepID=B4ML... 341 3e-92 UniRef50_Q7Q6B2 AGAP005939-PA n=2 Tax=Culicidae RepID=Q7Q6B2_ANOGA 341 3e-92 UniRef50_UPI0001B7B957 DinB1 protein n=3 Tax=Euteleostomi RepID=... 340 4e-92 UniRef50_B2AY86 Predicted CDS Pa_1_10240 n=3 Tax=Sordariomycetes... 340 7e-92 UniRef50_A5Z8E0 Putative uncharacterized protein n=10 Tax=Clostr... 340 7e-92 UniRef50_D2VFM3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 339 9e-92 UniRef50_Q5Q9H0 Polymerase kappa isoform 9 n=3 Tax=Murinae RepID... 339 9e-92 UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium... 339 1e-91 UniRef50_B8M4C5 DNA-directed polymerase kappa, putative n=14 Tax... 338 1e-91 UniRef50_Q29DW0 GA11465 n=3 Tax=Drosophila RepID=Q29DW0_DROPS 338 2e-91 UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxoba... 338 2e-91 UniRef50_D0NDK9 DNA repair protein REV1 n=1 Tax=Phytophthora inf... 338 2e-91 UniRef50_C3WGR0 DNA polymerase IV n=6 Tax=Fusobacterium RepID=C3... 337 3e-91 UniRef50_C8WGA6 DNA-directed DNA polymerase n=3 Tax=Bacteria Rep... 337 4e-91 UniRef50_A4RF27 Putative uncharacterized protein n=1 Tax=Magnapo... 336 5e-91 UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdema... 336 6e-91 UniRef50_B8GPZ5 DNA-directed DNA polymerase n=2 Tax=Gammaproteob... 336 8e-91 UniRef50_P04152 Protein umuC n=103 Tax=Gammaproteobacteria RepID... 336 8e-91 UniRef50_B6Q7Y5 DNA-directed polymerase kappa, putative n=2 Tax=... 335 2e-90 UniRef50_Q7NAR2 UmuC/DinP-like n=1 Tax=Mycoplasma gallisepticum ... 335 2e-90 UniRef50_A4QFK8 DNA polymerase IV n=28 Tax=Actinomycetales RepID... 335 2e-90 UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacte... 334 2e-90 UniRef50_Q6F1D8 DNA polymerase IV (PolIV) n=1 Tax=Mesoplasma flo... 333 4e-90 UniRef50_A9UNE7 GH11153p (Fragment) n=8 Tax=Drosophila RepID=A9U... 333 5e-90 UniRef50_B6K5W3 DNA polymerase kappa n=2 Tax=cellular organisms ... 333 5e-90 UniRef50_B0UY97 Novel protein similar to vertebrate REV1 homolog... 333 6e-90 UniRef50_UPI0000D862D7 hypothetical protein CIMG_01093 n=1 Tax=C... 333 6e-90 UniRef50_Q5N669 DNA polymerase V n=9 Tax=Bacteria RepID=Q5N669_S... 332 9e-90 UniRef50_A1SN18 DNA-directed DNA polymerase n=13 Tax=Actinomycet... 332 1e-89 UniRef50_A0QHM7 DNA polymerase IV 1 n=8 Tax=Corynebacterineae Re... 332 1e-89 UniRef50_B7QCT1 Terminal deoxycytidyl transferase rev1, putative... 331 2e-89 UniRef50_B9LT67 UMUC domain protein DNA-repair protein n=3 Tax=H... 331 3e-89 UniRef50_B0R4P0 DNA polymerase IV n=7 Tax=Halobacteriaceae RepID... 331 3e-89 UniRef50_B0D2Y9 Predicted protein n=3 Tax=Agaricales RepID=B0D2Y... 331 3e-89 UniRef50_B2A4V8 DNA-directed DNA polymerase n=5 Tax=Clostridia R... 330 3e-89 UniRef50_A0D236 Chromosome undetermined scaffold_35, whole genom... 330 4e-89 UniRef50_A5EBX2 DNA polymerase IV (Pol IV 3) n=2 Tax=Bradyrhizob... 330 6e-89 UniRef50_A2DLM9 ImpB/MucB/SamB family protein n=1 Tax=Trichomona... 329 9e-89 UniRef50_C1A9Y5 DNA polymerase IV n=1 Tax=Gemmatimonas aurantiac... 328 2e-88 UniRef50_B5Y6A2 DNA-directed DNA polymerase n=1 Tax=Coprothermob... 327 3e-88 UniRef50_C7N9E0 DNA-directed DNA polymerase n=5 Tax=Fusobacteria... 326 5e-88 UniRef50_C7MBE5 Nucleotidyltransferase/DNA polymerase involved i... 325 1e-87 UniRef50_Q4P422 Putative uncharacterized protein n=1 Tax=Ustilag... 325 2e-87 UniRef50_Q4KWZ7 REV1 protein n=9 Tax=Euteleostomi RepID=Q4KWZ7_C... 325 2e-87 UniRef50_B1AJ79 DNA polymerase IV n=15 Tax=Ureaplasma RepID=DPO4... 324 3e-87 UniRef50_C4G2M8 Putative uncharacterized protein n=1 Tax=Abiotro... 324 3e-87 UniRef50_P63988 DNA polymerase IV 2 n=20 Tax=Corynebacterineae R... 323 4e-87 UniRef50_Q5QZ82 DinP n=2 Tax=Idiomarina RepID=Q5QZ82_IDILO 323 6e-87 UniRef50_A9NFG9 DNA polymerase IV n=1 Tax=Acholeplasma laidlawii... 323 7e-87 UniRef50_O74944 DNA polymerase kappa n=1 Tax=Schizosaccharomyces... 323 7e-87 UniRef50_C5CJ42 DNA-directed DNA polymerase n=1 Tax=Kosmotoga ol... 322 1e-86 UniRef50_C1E418 Predicted protein (Fragment) n=2 Tax=Micromonas ... 322 1e-86 UniRef50_A2FMN4 ImpB/MucB/SamB family protein n=1 Tax=Trichomona... 322 1e-86 UniRef50_A9V4K7 Predicted protein n=1 Tax=Monosiga brevicollis R... 321 3e-86 UniRef50_B5BUV5 DNA polymerase kappa n=2 Tax=Agaricales RepID=B5... 321 3e-86 UniRef50_Q11QJ9 Nucleotidyltransferase/DNA polymerase involved i... 320 4e-86 UniRef50_C0QCD0 UmuC1 n=3 Tax=Desulfobacterium autotrophicum HRM... 320 5e-86 UniRef50_A0L9G4 DNA-directed DNA polymerase n=1 Tax=Magnetococcu... 319 8e-86 Sequences not found previously or not previously below threshold: >UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX85_SYNWW Length = 393 Score = 433 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 135/349 (38%), Positives = 197/349 (56%), Gaps = 5/349 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H D+D FFA+VE DNP+LR P+ +GGS RGV+ST +Y ARKFG+RSAMP A Sbjct: 7 ILHCDLDAFFASVEQLDNPSLRGKPVVVGGSMHSRGVVSTCSYEARKFGIRSAMPIAQAY 66 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP LP Y E S + I SRY+ E +S+DEA+LD++ +GS I Sbjct: 67 RLCPQAVFLPVNMPRYLEISKQVFSILSRYSPIKEIISIDEAFLDISGCSSLYGSPEKIG 126 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 I + +++EL LT S G++ KFLAK+ASDM+KPNG +IT +E L+ LP+++I G Sbjct: 127 CLINEQVYSELGLTISVGISYNKFLAKLASDMDKPNGLRIITESEALELLRPLPVSRIWG 186 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 +G+ + L+ +G++T GD+Q L + G GR+ WE + GID R V E RKS+ Sbjct: 187 IGQKTEQSLDKLGIKTIGDIQDSPPEWLEDKIGSAGRLFWELAHGIDRRAVEPEHERKSL 246 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G E T EDI+ + E +I + EL R+L + L A +KL++ +F+ T+ Sbjct: 247 GREETFPEDINDTAYLEKLIVQFAAELCRKLR--QEALFAATITIKLRYSNFKTITRSKT 304 Query: 304 WPRLNKADLI-ATARKTWDERRGGR-GVRLVGLHVTLLDPQME-RQLVL 349 N ++ A + + +RL GL + L P Q L Sbjct: 305 INPCNSDIIVTQIASELLHHSYNNKQPLRLFGLSLGQLSPAASLEQGSL 353 >UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDP3_9FIRM Length = 395 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 121/356 (33%), Positives = 181/356 (50%), Gaps = 9/356 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPT 59 MR+IIHVDM+ FFA+ NP + P+ + G ++R G+I TA+Y ARKFGV++AM Sbjct: 1 MRQIIHVDMNAFFASCHQAQNPQWQGKPLLVAGDPQKRHGIILTASYEARKFGVKTAMAV 60 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A KLCP + Y S I I YT +EP S+DEA+LDVT S G+ Sbjct: 61 WQAKKLCPQGIYISPDHKLYSAYSKRIMAIMEDYTPLVEPFSIDEAWLDVTGSARLFGTT 120 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 I + ++Q I +E + S G++ KFLAK+AS+ KP G ++ P +VP L LP+ Sbjct: 121 EEIGRLLQQRILDETGIPCSVGISGNKFLAKMASERQKPQGFTILWPRDVPEVLWPLPVE 180 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE-- 237 ++ GVG+ A L MG+ T G++ L +L+ RFG G L + G D+ V+ Sbjct: 181 EMVGVGRKMAPALHEMGIETIGELAAMPLRLLVSRFGVAGESLHHLANGRDDSPVDPTVF 240 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KSVG T+ DI+ + ++ +L ++ RRL + + + +K +F Sbjct: 241 DTVKSVGNSLTLPRDINDPEDVARVLLKLSEKVGRRLR--QSGNVARTVTLTVKDQNFVS 298 Query: 298 TTQEHVW--PRLNKADLIATARKTW-DERRGGRGVRLVGLHVTLLDPQM-ERQLVL 349 T+ P + TA + R VRL+G+ V+ L P QL L Sbjct: 299 VTRSRTLHEPTGFTDVIYKTAVDIHQKQFEPWRKVRLLGVSVSNLLPADGGVQLSL 354 >UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_CARHZ Length = 391 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 146/352 (41%), Positives = 195/352 (55%), Gaps = 6/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIHVDMD FFAAVE RDNP L+ P+ +GG RGV++ A+Y ARKFGVRSAM Sbjct: 4 RVIIHVDMDAFFAAVEQRDNPELKGKPVIVGGVPGERGVVAAASYEARKFGVRSAMSLWE 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH +PG Y+E S I IF YT +EP+SLDEAYLDVT S G Sbjct: 64 AARLCPHGIFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSLDEAYLDVTGSQKLFGPGAE 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I ++I++ IF E +LTAS GVAP KFLAK+AS++NKP+G + V FL LP+ + Sbjct: 124 IGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVREDNVLDFLAPLPVEML 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG+ +L MG++T D + L K+FG G+ L+ S+GID R+V ER+ K Sbjct: 184 WGVGEKMKERLNDMGIKTVQDFWELPEFFLRKKFGVLGQNLYYLSRGIDFREVIPERVPK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T+ +D + L + R L + VK++ F T+ Sbjct: 244 SLGKEITLQKDSSDVDYLLGKLLGLTMAVGRGLR--REGFYAGGISVKIRLSSFITYTRH 301 Query: 302 HVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDP-QMERQLVL 349 + P L A++ + E G VRLVG+ T L P RQ+ L Sbjct: 302 SRFFEPTWMDDVLYREAKRLFLENYHGELPVRLVGVTATPLVPVGGGRQISL 353 >UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibrio RepID=B8DIF6_DESVM Length = 481 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 141/355 (39%), Positives = 198/355 (55%), Gaps = 9/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FFA+VE D+P+LR P+A+GG RGV+S A+Y AR+FGVRSA+P Sbjct: 4 RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGG--SHRGVVSAASYEARRFGVRSALPMST 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCPHL ++PGR Y E S+ I + ++ +EP S+DEAYLD T G Sbjct: 62 ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121 Query: 122 IAQEIRQTIFNELQ-LTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 + ++ + + LT S G APVKFLAKIASD+NKPNG F++ P +V FL+TLP+ + Sbjct: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGK S LE +G+R GDV + +RFGK G L ER+ G+D R+V Sbjct: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS E T +ED + + + L + + L +K+K+ DF+ ++ Sbjct: 242 KSESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQR--LAGRTITLKVKYADFRSISR 299 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVLGL 351 H P + + A + D VRL+G+ V+ P RQL L L Sbjct: 300 SHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPAHHGPRQLTLPL 354 >UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms RepID=A4CII2_9FLAO Length = 366 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 148/347 (42%), Positives = 208/347 (59%), Gaps = 5/347 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD FFA+VE RD P LR PIA+GG +RGV++ A+Y AR FGVRSAM Sbjct: 7 LRKIIHIDMDAFFASVEQRDQPELRGRPIAVGGG-AKRGVVAAASYEARTFGVRSAMSGV 65 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L + RFD Y+E S IR IF YT +EPLSLDEAYLDVT + SAT Sbjct: 66 QARRLCPELVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYLDVTANRKGMPSAT 125 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIA+EIR+ I E LTASAG++ KF+AK+ASD NKPNGQ + P +V FL++L + K Sbjct: 126 LIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPEDVQEFLESLEIRK 185 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKV+A K+ A+G+ T D+++ L FGK G + +G+ + V R+ Sbjct: 186 FHGVGKVTAEKMNALGIFTGADLRRQSEHFLTGHFGKSGHHYYRVVRGVHDSPVQPSRVP 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G ERT +E++ + ++ EL RRL + +K+++ DF T+ Sbjct: 246 KSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRT--RNRSGKTITLKIRYSDFSLQTR 303 Query: 301 EHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER 345 + ++A AR ++ VRL+G+ ++ LD + E+ Sbjct: 304 SRTLAEYIDSPERILAAARDLLYQQPLENSVRLLGISLSNLDTEKEK 350 >UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria RepID=B9JZV6_AGRVS Length = 385 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 152/355 (42%), Positives = 207/355 (58%), Gaps = 7/355 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD F+A+VE RD P L P+A+GGS RGV++ A+Y AR FGV SAMP+ Sbjct: 32 VRKIIHVDMDAFYASVEQRDKPELLGKPVAVGGS-AARGVVAAASYEARAFGVHSAMPSV 90 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L +P RFD Y++ S+ IREIF+ YT IEPLSLDEAYLDVT+++ AT Sbjct: 91 TAKRKCPDLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIAT 150 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR I L ASAG++ KFLAK+ASD+NKPNGQ VITP P F++ LP+ + Sbjct: 151 EIALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVKR 210 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A +++ G+ T D++ L L FGK G + ++GIDER V ++R+R Sbjct: 211 FHGVGPATAERMQRHGIETGLDLKSKSLQFLQTHFGKSGSYFYGIARGIDERQVRADRIR 270 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T EDI A + L ++ R D+ VK+K+ DF Q T+ Sbjct: 271 KSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCESH--DIKGKTITVKIKYSDFSQATR 328 Query: 301 EHVWP--RLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQ-LVLGL 351 + ++ A VRL+G+ ++ L+ + Q L L Sbjct: 329 SKTVAGYVSDIDMIMGIAEPLLASVFPFKHPVRLLGITLSSLNTEESEQTPQLAL 383 >UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4_THETN Length = 384 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 8/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD FFA++E +DNP R P+ +GG RGV+ST +Y ARK+G+ SAMP M Sbjct: 3 RKIIHVDMDAFFASIEQQDNPEYRGKPVIVGGL-SGRGVVSTCSYEARKYGIHSAMPMYM 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP LP R Y+E S I I T +EP+S+DEAYLDVT + Sbjct: 62 AKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVTHVDK---NPED 118 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA EI++ + + LT S G++ KFLAK+ASD NKP+G VIT VP L+ LP+ K+ Sbjct: 119 IALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITEDMVPEILKPLPVTKV 178 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G+ SA KL ++G+ T D+ K L++ FGK G ++ R +GIDER V + R K Sbjct: 179 HGIGEKSAEKLRSIGIETVEDLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIK 238 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E+T+ +D + ++ + L +K L VK+K DF T+ Sbjct: 239 SIGKEKTLEKDTKNKELLIQHLKEFSEIVSEEL--IKERLYCRTVTVKIKTADFAVHTKS 296 Query: 302 HVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + D+ A+ +E + + VRL+GL V+ L P QL Sbjct: 297 KTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLSPVKYEQLSF 346 >UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU3_PELCD Length = 399 Score = 427 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 136/351 (38%), Positives = 198/351 (56%), Gaps = 7/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD F+A+VE D+P L+ P+ +GG R RGV+ +Y AR FG+ SAMP Sbjct: 9 RIILHLDMDAFYASVEQLDSPELKGQPVVVGGHRS-RGVVCACSYEARTFGIHSAMPMSR 67 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP + P R Y+E S + +IF RYT +EPLS+DEA+LDVT S G Sbjct: 68 ALRLCPQAIVQPVRMARYQEISRQVFDIFGRYTDLVEPLSVDEAFLDVTASRRLFGEGWD 127 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++IR+ + +EL L SAG+AP KFLAK+AS+ KP+G F + P V FL +LPL ++ Sbjct: 128 IAEKIRRDVRDELGLPISAGIAPNKFLAKLASEQAKPDGVFQV-PERVDDFLLSLPLKRL 186 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V L+ MGLRT D++ D + + FG+ G L + + G DER V +R K Sbjct: 187 WGVGPVLLKSLQKMGLRTVADLRHMDRADMERCFGQAGERLIQLAHGEDERPVEPQRSLK 246 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +DI + L + RL K L+ +K+K+ DF T+ Sbjct: 247 SIGHEDTFDQDIFERETMHVALLDLVERVAARLR--KHGLIGTTLTLKVKYADFSTVTRS 304 Query: 302 HVWP--RLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQLVL 349 + D++ A++ ++ G + VRL+G+ + L Q +L Sbjct: 305 RSVADGICHARDMLHLAKQLLEKTEAGKKPVRLLGVSLANLMDADSGQGLL 355 >UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EN92_ACIF5 Length = 378 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 145/361 (40%), Positives = 199/361 (55%), Gaps = 14/361 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD FFAAVE RD+P LR P+ +GG RGV++T +Y AR+FG+ SAM Sbjct: 12 LRKIIHVDMDAFFAAVEQRDHPELRGQPVIVGGDPAGRGVVATCSYEARRFGIHSAMTAA 71 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + R DAY+EAS + I YT +EPLSLDEA+LDVT + A Sbjct: 72 RARSLCPQAVFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFLDVTAATADGVLAV 131 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EIR I E LTASAGV+ K LAK+AS+ KPNG FV+ P AFL LP+ K Sbjct: 132 RIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHGLAFLAPLPVGK 191 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG + KL AMG+ T D++ +L+ +FGK G +E ++GID R V + R R Sbjct: 192 LHGVGPATVKKLSAMGIHTVLDLRNASREVLIAQFGKAGLWFYEVARGIDSRPVQTSRQR 251 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG ERT +++ + + ++ ++ RL + L +K +F DF+ T+ Sbjct: 252 KSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQAL--GLAGRTVSIKARFPDFETVTR 309 Query: 301 EHVWPRLN--KADLIATARKTWDERRG-----GRGVRLVGLHVTLL-----DPQMERQLV 348 H + +IA + VRL+G+ V+ L P Q+ Sbjct: 310 AHTDAQAIWRTEAIIACLPGLLAKAIPASLPMHASVRLLGVTVSGLVNVEAVPPEAGQMN 369 Query: 349 L 349 L Sbjct: 370 L 370 >UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=DPO4_DESAA Length = 396 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 137/350 (39%), Positives = 200/350 (57%), Gaps = 7/350 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 IIHVDMD F+A+VE+ DNP LR + +GG+ RGV+ +A+Y AR GVRSAMP A Sbjct: 6 IIHVDMDAFYASVELLDNPELRGQCVIVGGA-SNRGVVCSASYEARALGVRSAMPIVTAR 64 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP LP R Y+E S + EIF +YT +EP+SLDEA++DVT S GS IA Sbjct: 65 KLCPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLFGSGEEIA 124 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR+ I + L +TASAG+A K +AKIASD+ KPNG V+ + FL LP++++ G Sbjct: 125 ANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPADQTQEFLDPLPISRLWG 184 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG S KL ++G++T DV+K ML FG+ G +++ ++G+D+R V KS+ Sbjct: 185 VGPASRNKLISLGVKTIRDVRKLTQEMLSANFGRNGEVIYAFARGMDDRPVEPPGAAKSI 244 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G E T +++ E + L + RR+ K + +K+K+ DF Q T+ Sbjct: 245 GREITFDRNVYTLEEAYKWMLFLSERVARRMR--KEEATGRTVNIKVKYADFIQVTRSVT 302 Query: 304 W--PRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLL-DPQMERQLVL 349 P + ++ A+K + G + VRL+G+ ++ L P Q L Sbjct: 303 LESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQLVTPGQAWQPGL 352 >UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatella RepID=C8NE97_9LACT Length = 352 Score = 424 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 143/353 (40%), Positives = 203/353 (57%), Gaps = 6/353 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKI+HVDMD FFA+VE R++P R P+ +GG RGV+ST +Y AR FGVRSAMPT Sbjct: 1 MRKILHVDMDAFFASVEQREHPEWRGKPVIVGGKPNERGVVSTCSYEARAFGVRSAMPTA 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A+KLCP L PG + YKE S+ +RE+F +T+ IEPLS+DEAYLDVT++ SAT Sbjct: 61 KAMKLCPKAILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYLDVTNNSRGIASAT 120 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A I++ ++ + LT S GV+ KFLAK+AS KP+G VITP F++T+P+ Sbjct: 121 LVAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKPSGITVITPENAQEFIRTIPIGD 180 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKVSA KL G+ T D+ L RFG G L+ + +GI + R R Sbjct: 181 FYGVGKVSAEKLRRAGIETGEDLLHLSKAELESRFGNLGPRLYAQVRGISNDQLTLYRER 240 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G ERT+ +D +E+ E+ L K L +KL+ +F T++ Sbjct: 241 KSMGSERTLIKDTTDHGILSEYLEKFSLEIASMLQ--KRALASRTISLKLRDSNFNTTSK 298 Query: 301 EHVWPRLNK--ADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM--ERQLVL 349 +++ A + ++E + +RL+GL V+ L+ +QL L Sbjct: 299 SVTLRDYFNKKEEILQLALQLFEEMMDEKPIRLIGLSVSHLEKTDKIYKQLKL 351 >UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidetes RepID=C6VYA9_DYAFD Length = 372 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 158/360 (43%), Positives = 219/360 (60%), Gaps = 13/360 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A+VE RD P R P+A+GGS RGV++TA+Y ARKFGVRSAMP+ Sbjct: 10 IRKIIHIDMDAFYASVEQRDFPEYRGKPLAVGGSPTGRGVVATASYEARKFGVRSAMPSR 69 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A++LCP + + RF+ YK S IREIFSRYT IEPLSLDEAYLDVT+ GSA Sbjct: 70 QAIQLCPQIIFVHPRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYLDVTEDKMGIGSAM 129 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++I+Q I EL LTASAGV+ KF+AKIASD++KPNG I P+++ F+ LP+ K Sbjct: 130 EIAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIGPSKIERFMDQLPVEK 189 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGKV+A K++ M L T D++K L+ FGK G + +GID+R+V + R Sbjct: 190 FHGVGKVTADKMKGMQLFTGSDLKKLTEEELVNHFGKTGHFYYRIVRGIDDREVQTHRET 249 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T D+ E ++R+ + RL L +K+KF DF Q T+ Sbjct: 250 KSLGAEDTFTYDLTTPDEMNKELDRIGVTVANRLET--KKLKGRTVTLKVKFSDFTQITR 307 Query: 301 EHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDP--------QMERQLVL 349 H + P + + TA++ ++ G+ VRL+G+ ++ + QL L Sbjct: 308 NHSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRLLGISLSNFHEPEVKYRKYKDPEQLEL 367 >UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WH69_9SYNE Length = 371 Score = 422 bits (1086), Expect = e-117, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 206/354 (58%), Gaps = 5/354 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A++E RDNP LR P+A+GG +RG + A+Y ARK+G+ SAMP+ Sbjct: 20 VRKIIHIDMDAFYASIEQRDNPELRGKPVAVGGLPSQRGAVCAASYEARKYGIHSAMPSR 79 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A+ C HL + RF+ Y+ S IR IF YT +EPLSLDEAYLDV+ GSA Sbjct: 80 SAITRCQHLIFVKPRFEHYRAVSAEIRAIFFDYTELVEPLSLDEAYLDVSVDKQGIGSAV 139 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++IR I +LQLTASAGV+ KFLAKIASD+NKP+G I+P E F++ L + Sbjct: 140 AIAKQIRDRIRTDLQLTASAGVSINKFLAKIASDLNKPDGLSFISPEEAKTFIEQLRIED 199 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A K++++G+ T D++ L + FGK G + ++ D R VN R+R Sbjct: 200 FYGVGPATATKMKSLGIHTGADLKTWTQAELTQTFGKVGSYYYRVARAEDNRPVNPNRIR 259 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G ER+ D+ + E + + E+ +RL K K +K+K+D++ T+ Sbjct: 260 KSIGAERSFFRDLSQIEDMETALANIATEVSQRLQKNKRQG--HTLTLKIKYDNYDTITR 317 Query: 301 EHVWPRLNKA-DLIATARKTW-DERRGGRGVRLVGLHVTLLD-PQMERQLVLGL 351 + ++ A + R VRL+G+ V+ L PQ QL L + Sbjct: 318 SRTLETPIEEKQILQIATRLLSLHVERDRPVRLLGITVSNLIAPQPYHQLTLNI 371 >UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_HALHL Length = 356 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 147/348 (42%), Positives = 203/348 (58%), Gaps = 5/348 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE RD+P+LR P+ +GGS E RGV++ A+Y AR FG+RSA P Sbjct: 4 RKIIHIDMDAFYASVEQRDDPSLRGQPVVVGGSPEGRGVVAAASYEARAFGIRSAQPAAW 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + CP L RFD Y+ S I IF+ + + IEPLSLDEAYLDVT S GSAT Sbjct: 64 ARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRGSATH 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +AQ IR+ I E LTASAGV+ K LAK+ASD KP+G +V+ P + PA++ P+ ++ Sbjct: 124 MAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGPAYVAAQPIRRL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG +AA+LE +G+R GD+ +L L G L + ++GID R V R RK Sbjct: 184 HGVGPATAARLERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRPVRPRRSRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G ERT +D E + L ++ RL +L+ +KL++ DF+ T+ Sbjct: 244 SIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHH--ELVARTVTLKLRYADFESITRR 301 Query: 302 HVW--PRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQ 346 P AD+ A E G R VRL+G+ ++ L P+ Q Sbjct: 302 VSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQ 349 >UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C6BW91_DESAD Length = 389 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 134/350 (38%), Positives = 194/350 (55%), Gaps = 6/350 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I+H+DMD FFA+VE DNP LR P+ +G E R V+S A+Y ARKFGVRSAMP Sbjct: 3 KYIMHIDMDAFFASVEQLDNPELRGKPVGVGSMHE-RSVLSAASYEARKFGVRSAMPVRQ 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP L ++ G YKE S + S Y+ +E S+DEAY+D+T + G+ Sbjct: 62 ALKLCPQLQVVSGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYIDITGTEKLFGTPLQ 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I+ I LTAS G+APVKFLAKIASD+NKP+G +IT +V FL+TLP+ KI Sbjct: 122 IARSIKADIRKATGLTASVGIAPVKFLAKIASDLNKPDGISIITAEQVQDFLKTLPVEKI 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGK + +L + G+ D+++ +RFG+ G +L+E+ GID V K Sbjct: 182 PGVGKKALPRLRSYGITYAADLRRYPPEFWKERFGERGLVLYEKGAGIDPTPVTEGGAMK 241 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S E T ED+ + ++ + + + K + +K+KF DF+Q T+ Sbjct: 242 SSSAENTFGEDVSDIHTLKTLLLKQSERIAADIR--KHGVKGRTVTLKVKFPDFRQITRS 299 Query: 302 HVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + + TA D +RL+G+ ++ + + RQL L Sbjct: 300 RTLDSRTSHAGTIYKTACSLLDAELPIGPIRLIGVGISNFEERN-RQLSL 348 >UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42_AGRT5 Length = 357 Score = 420 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 207/358 (57%), Gaps = 10/358 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIHVDMD F+A+VE RDNP LR P+A+G + R V + A+Y AR+FGVRSAMP+ Sbjct: 1 MRKIIHVDMDAFYASVEQRDNPELRGRPVAVGSAAARGVV-AAASYEAREFGVRSAMPSV 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L +P RFD YK S IR IF+ YT IEPLSLDEAYLDVT+++ AT Sbjct: 60 TAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I L ASAG++ KFLAK+ASD+NKPNGQ VITP PAF++ L + K Sbjct: 120 EIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLAVKK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG +A K+ G+ T D++ L L + FGK G + ++GIDER V +R+R Sbjct: 180 FHGVGPATAEKMHRFGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPDRIR 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T + DI+ A + L ++ + + VK+K+ DF Q T+ Sbjct: 240 KSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQR--VSGKTVTVKVKYSDFTQATR 297 Query: 301 EHV--WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDP----QMERQLVLGL 351 P +++ A R VRL+G+ ++ L + E Q L L Sbjct: 298 SRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQEAEDEEQPQLDL 355 >UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8L2_NATTJ Length = 408 Score = 419 bits (1079), Expect = e-116, Method: Composition-based stats. Identities = 131/361 (36%), Positives = 205/361 (56%), Gaps = 16/361 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+I+H+DMD F+A+VE RDNP L D P+ IGG RRGV+ST Y ARK+G+ SAMP Sbjct: 14 RQILHIDMDAFYASVEKRDNPELEDKPVIIGG--SRRGVVSTCCYKARKYGLHSAMPMYR 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH L D Y+ S I++IF +T +EPLSLDEA+LDVT S++ G A Sbjct: 72 AQRLCPHGVYLRPDMDKYRRVSQEIKKIFLEFTPLVEPLSLDEAFLDVTGSLNLFGDAVN 131 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++I+ I ++LQLT S GVA KF+AK+ASD+ KP G + + FL LP+ K+ Sbjct: 132 IAEKIQTQISDQLQLTCSIGVATNKFIAKVASDLKKPAGLTHVPTGKEQDFLAPLPVDKL 191 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKC-----DLVMLLKRFGKFGRILWERSQGIDERDVNS 236 GVG+ + A++++ G T G++Q+ ++ L K F ++G D+R+V Sbjct: 192 WGVGEKTTARIKSRGYHTIGELQQMLAKAQNINSLAKSFNIT-EDTLLLAKGYDDREVVP 250 Query: 237 ERLRKSVGVERTMAEDIH---HWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 E KS+G E+T A+D+ +++ + + ++ RL K VK++ Sbjct: 251 EEPPKSIGQEKTFAQDLTAGSQYNQLIPHLLKFSEQVGARLRKAGYKG--KTVTVKIRDS 308 Query: 294 DFQQTTQEHVWPRLN-KADLIATARKTWDER--RGGRGVRLVGLHVTLLDPQMERQLVLG 350 F+ T++ P + ++ A A++ + +RL+G+ V+ L ++QL L Sbjct: 309 RFKTWTKQKTVPETDQDKEIYAHAQELLQNMNLKPSDEIRLLGVTVSNLVSSTQQQLSLD 368 Query: 351 L 351 + Sbjct: 369 M 369 >UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3M4_EXISA Length = 363 Score = 419 bits (1078), Expect = e-116, Method: Composition-based stats. Identities = 150/354 (42%), Positives = 197/354 (55%), Gaps = 7/354 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIHVDMD F+A+VE RD P LR P+ +GG RGV++T +Y ARK+GV SAM + Sbjct: 3 RLIIHVDMDAFYASVEQRDRPNLRGKPVIVGGPPHSRGVVATCSYEARKYGVHSAMSSRR 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCPH T + RF AY++ S + EIF T +EPLSLDEAYLDVT++ S Sbjct: 63 AFALCPHATFVKPRFQAYRQVSAQVMEIFKSVTPLVEPLSLDEAYLDVTENSLLSTSGPF 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I I LTASAGVAP KF+AKIAS KPNG V+ EV FL L + + Sbjct: 123 IARYILGEIKRRTGLTASAGVAPSKFVAKIASGFEKPNGLTVVPLDEVATFLAPLSIEAM 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 GVGKV+A L G T GD+Q+ L FG G+ L+E + G D R V + R R Sbjct: 183 HGVGKVTAQTLYKSGYHTIGDLQQTRPEQLKGIFGHDRGQQLYELAHGRDTRPVVAMRER 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T A DI E + ++ R+L + DL +K+K +FQ + Sbjct: 243 KSIGSETTFAFDIDDPEEVFERVIPEMEDVLRQL--DRRDLSCQTVTIKIKTSEFQARSH 300 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVLG 350 + P + ++ AR+ +DE VRL+GL V+ L P+ E RQL Sbjct: 301 QIKLNHPTHDHDEIRRLARRLFDEMNVTEPVRLIGLTVSDLIPRTESTRQLTFD 354 >UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacter RepID=Q1QAG3_PSYCK Length = 371 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 147/353 (41%), Positives = 199/353 (56%), Gaps = 4/353 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMD F+A+VE RD P LR P+ +GG RGV++ A+Y RKFGVRSAM Sbjct: 19 LRKIIHIDMDAFYASVEQRDFPELRGKPLVVGGDPNGRGVVAAASYEVRKFGVRSAMSCY 78 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A K CP + +P RFD Y+ S IR I T +EPLSLDEAYLDVT GSAT Sbjct: 79 EARKRCPEVIFVPPRFDVYRAVSVEIRRIMHILTPHVEPLSLDEAYLDVTGLSVHQGSAT 138 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A +R I + L ASAGV+ K LAKIASD+NKPNG VITPA+ AF+ LP+ + Sbjct: 139 LMANWLRAQILGQTGLNASAGVSFNKMLAKIASDINKPNGTAVITPADADAFISALPIER 198 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+GK +A +L AMG+ D+++ +L+ FGK G+ + + G DER V SER Sbjct: 199 FHGIGKATAKRLHAMGVSNGADLRRTPAAILVNEFGKRGQFYHDIAHGRDERAVKSERTH 258 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T E++ +E + I + +L K L+ +K+K+ DF Q T+ Sbjct: 259 KSVGSETTFRENLTDDNELKIQIYEQNADAFSQL--HKKQLIAYTITLKVKYSDFTQVTR 316 Query: 301 EHVWPRLNKADLIATAR--KTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 H + A K + + +RLVG+ + L + L L Sbjct: 317 SHTLSTAFDSAESAHFWLDKLFLDIPRTLPIRLVGVTFSSLTSATQVTPQLNL 369 >UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_CLOD6 Length = 365 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 141/347 (40%), Positives = 209/347 (60%), Gaps = 6/347 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A++E RDN L+ P+ +GG+ + RGV++T +Y ARKFG+ SAMP+ + Sbjct: 5 RKIIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMPSAV 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A CP+ + RFD YK S IR+IF RYT +EPLSLDEAYLDVT + S+ Sbjct: 65 AYNRCPYAVFVRPRFDVYKSVSEKIRDIFYRYTDLVEPLSLDEAYLDVTKNKKNIDSSIE 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA++I++ IF E+ LT+SAGV+ KFLAKIASD+ KPNG VIT FL LP+ K Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV++ L+ +G++T D++ +L L F K G L++ ++GID+R V R+RK Sbjct: 185 FGVGKVTSNTLKNLGIKTGYDLRCLNLFELENIFKKRGYELYKFARGIDDRPVEPNRVRK 244 Query: 242 SVGVERTMAEDIH-HWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 SVG E T++ ++ E I++ L E+ RL + +K+K++DF + T+ Sbjct: 245 SVGAETTLSHNLDIDEEETRNILDELCEEVCHRLK--NSEKFGKTLTLKIKYEDFTKITR 302 Query: 301 EHVWPRLNKA--DLIATARKTWDERR-GGRGVRLVGLHVTLLDPQME 344 D+ + G+ +RL+G+ ++ L + E Sbjct: 303 SLSLEHYIDEYNDIRSGVDNLLRNVEVNGKQIRLLGVTISNLSDKKE 349 >UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteobacteria RepID=A0LG84_SYNFM Length = 425 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 124/341 (36%), Positives = 187/341 (54%), Gaps = 6/341 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+I+HVDMD F+A+VE D P + P+ +GG+ RRGV+S A+Y AR+FGV SAMP Sbjct: 35 RRIMHVDMDAFYASVEQADRPEFKGKPVIVGGA--RRGVVSAASYEARRFGVHSAMPVFQ 92 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LP R YKE S + +I + +E +S+DEA++D+T + HGS Sbjct: 93 AKRLCPGGIFLPVRMGRYKEVSKVVMDILCGISPLVEQISIDEAFVDITGTEALHGSPES 152 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + ++ I ++T S G+AP KF+AKIASD++KP+G ++ V AFL LP+ +I Sbjct: 153 LGRRVKSQIRAATRVTCSVGIAPGKFVAKIASDIHKPDGLTIVEDDRVEAFLAPLPVERI 212 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+GK ++ L ++G+R GDV + +KR G +G L ER++G+D V + K Sbjct: 213 PGIGKKTSEALRSLGVRAIGDVLRFPASFWVKRLGAWGVKLHERARGVDPAPVIAYSQAK 272 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S E T ED+ E + E+ + L + +K+KF DF T+ Sbjct: 273 SCSAEDTFPEDVDDVETLEKWLFVQSEEVGKELR--RESFRGRTVTLKVKFADFSSITRS 330 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD 340 H + TA + + R VRLVG+ V+ L Sbjct: 331 HTLREATDCTQLIFGTASRLLRALKLNRKVRLVGVGVSNLS 371 >UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermophilum RepID=DPO4_SYMTH Length = 361 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 147/368 (39%), Positives = 194/368 (52%), Gaps = 24/368 (6%) Query: 1 MR---KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAM 57 MR +IH+DMD FFA++E RDNP LR P+ +GGS RGV+ST +Y AR+FGVRSAM Sbjct: 1 MRTDLWVIHLDMDAFFASIEQRDNPRLRGKPVIVGGSPNSRGVVSTCSYEARRFGVRSAM 60 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 P+ AL+LCP + Y +R I R+T IEPLS+DEA+LDV+ Sbjct: 61 PSREALRLCPQAVFIRPNHAKYAAVGRQVRAIMRRFTDVIEPLSIDEAFLDVSG-----Q 115 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 A +A+E+++ I EL LT SAGV+ KFLAK+ASDM KP+G VIT L TLP Sbjct: 116 DAVRVARELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLP 175 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + K+ GVG S L A+G+ TCGD+ D L K FGK L ++GID R V Sbjct: 176 VRKLWGVGPASEQALHALGIYTCGDLLAYDPDTLRKHFGKRADELILLARGIDPRPVVPY 235 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD---- 293 R KS+G E T D ++ER L L + L VK+K++ Sbjct: 236 REAKSIGEENTFPVDQTDREYLSRLLERYADNLAEELR--RQGLYARTVTVKIKWNVFVE 293 Query: 294 ------DFQQTTQEHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQ-M 343 DF Q T+ P + + AR+ + GR VRL+GL V L Q Sbjct: 294 GGPKGGDFLQITRSQTLPMPTNDARTIGRVAREIFARVEWEGRKVRLLGLSVHNLVKQGE 353 Query: 344 ERQLVLGL 351 + Q L + Sbjct: 354 QVQAYLPI 361 >UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R0_DESRD Length = 397 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 127/352 (36%), Positives = 188/352 (53%), Gaps = 8/352 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA++E +D P L+ P+ +GG RGV+S A+Y AR+FGVRSAMP Sbjct: 3 RWILHVDMDAFFASIEQQDYPELQGRPVIVGG--GERGVVSAASYEARRFGVRSAMPISQ 60 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP+ GR YKE S + + ++ +E S+DEAYLD+T + G Sbjct: 61 ARKLCPNGNFCHGRHKRYKELSRQVMTVLDGFSPCVEQASIDEAYLDITGTERLLGPPGE 120 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + ++Q I L+AS G+AP KF+AKIASD +KP G I ++ FL LP+ K+ Sbjct: 121 VGRALQQAIRVRTGLSASIGIAPNKFVAKIASDWDKPGGLTWIRAEQLQTFLDKLPVRKL 180 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVG ++A LE +G+ + G V++ R G+ G+ LW R+ GID+ +V K Sbjct: 181 PGVGPRTSALLERLGVESVGAVRRFSEAFWTDRLGEGGKQLWARAHGIDDSEVQPYHAPK 240 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S G E T+ +D + + + + R L + + +K+++DDF T+ Sbjct: 241 SCGAEHTLPQDTEDEAILISWLLHEAERIGRELR--REVMEAGTVTLKIRYDDFTTFTRC 298 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP--QMERQLVL 349 P + DL + +++ R VRLVGL L P RQL Sbjct: 299 RKLSPPTQSTQDLYSAGVTLLRQQQLQRPVRLVGLSAGNLAPMGSGRRQLSF 350 >UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomycetales RepID=A6CAV0_9PLAN Length = 388 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 139/345 (40%), Positives = 201/345 (58%), Gaps = 6/345 (1%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD F+A++E RD+P L+ PI +GG E RGV+S ANYPARKFGV SAMP A +LCP Sbjct: 1 MDAFYASIEERDHPELQGQPIIVGGRAEHRGVVSAANYPARKFGVHSAMPMKTARQLCPQ 60 Query: 69 LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQ 128 P R Y E S +++IF +YT +EPLSLDEA+LDV+ S G+ IA I+Q Sbjct: 61 AHFFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFLDVSGSQLLFGNGREIAASIKQ 120 Query: 129 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVS 188 + + LQL AS GVAP KFLAKIASD +KP+G V+ P ++ FL LP++++ G+GK++ Sbjct: 121 EVRHSLQLIASVGVAPNKFLAKIASDADKPDGLVVVEPDKIQEFLDPLPVSRVWGIGKMA 180 Query: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERT 248 + +G++T V+ + +L + FG+ G LW SQG+DER V ER KS+ E T Sbjct: 181 TQRFNRLGIQTISQVRVLEPKILTELFGEQGLHLWNLSQGLDERAVIPERQAKSISRETT 240 Query: 249 MAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW--PR 306 + D++ I+ L ++ RRL K K L +K+++DDF T+ P Sbjct: 241 FSSDVNDLEILRIILMDLVEDVSRRLRKNK--LRGKTIQLKIRYDDFSTFTRSITVSQPT 298 Query: 307 LNKADLIATARKTWDERRGGRG--VRLVGLHVTLLDPQMERQLVL 349 ++ +A D++ R +RL+G+ VT + Q L Sbjct: 299 DLTREIEQSALLMLDQKLPERPLSIRLIGVGVTGFQSGSQHQKSL 343 >UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms RepID=DPO4_ACTPJ Length = 356 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 189/351 (53%), Positives = 235/351 (66%), Gaps = 4/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMDCF+AA+EMR+NPAL P+A+GGS E RGV++T NY ARKFG+ SAMPT Sbjct: 5 RKIIHIDMDCFYAAIEMRENPALIGKPVAVGGSVEGRGVLTTCNYEARKFGLHSAMPTAQ 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALK CP+L L+P YK S I +IF RYT +EPLSLDEAYLDVTD C GSAT Sbjct: 65 ALKRCPNLILVPVNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVTDCRQCSGSATW 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQEIR I+NEL LTASAG+AP+KFLAKI SD NKPNGQFVI+P + AF+ LPL KI Sbjct: 125 IAQEIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQFVISPENMTAFIYDLPLKKI 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ KL +GL TCGD+Q D + K FGKFG+ LWE S ID R + + R RK Sbjct: 185 PGVGKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQRLWEFSHAIDNRKIEANRPRK 244 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAK---VKPDLLIARQGVKLKFDDFQQT 298 S+ VE T+ DI H +E E I++ L+ +L RL + + + +KLKF DF QT Sbjct: 245 SLAVENTLPTDIWHLAEAEQIVDELFKKLVFRLQRNWGERSLQEFKKLAIKLKFGDFTQT 304 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T E L++ I ++ W R VRL+GL V ++++QL L Sbjct: 305 TLERTTDGLSRERFIELLQQVWQRT-NRRSVRLIGLSVHYPTEKVKKQLNL 354 >UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=uncultured marine microorganism HF4000_008B14 RepID=B3T119_9ZZZZ Length = 380 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 125/351 (35%), Positives = 187/351 (53%), Gaps = 5/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H D+D F+AAVE+ D+P L + +GG E RGV++TA+Y AR FG+ SAMP Sbjct: 18 RHVLHADLDAFYAAVEVLDDPDLAGKAVMVGGDPENRGVVATASYEARVFGIHSAMPMRT 77 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++LCPH ++ RFD Y++ S + ++F +T +EPLS+DEAYLD+T++V Sbjct: 78 AVRLCPHGIIIHPRFDRYRQLSRAVMDVFHDFTELVEPLSMDEAYLDITEAVDAGRLPLA 137 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA E++ + + LT S G K +AKIASD++KP+G V+ P E FL L + K+ Sbjct: 138 IALELKNRVHENIGLTLSVGAGTSKSVAKIASDLHKPDGLVVVAPGEEREFLAPLAVGKL 197 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + +L A G+ T GD+ +RFGK + R+ G D V +ER K Sbjct: 198 WGIGPKTGQRLRADGIETIGDLASQSTGWFQRRFGKRALDVQSRAMGEDREPVRTEREAK 257 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV E T A D+ + RL + + L L VK + DF T++ Sbjct: 258 SVSAESTFATDLSGEGTLYPHLSRLAGRVAQHLE--GKQLKGKTVTVKARLADFTTFTRQ 315 Query: 302 HVW--PRLNKADLIATARKTW-DERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P + ++ TA + + E GR RL+G+ V+ E QL L Sbjct: 316 TTLPYPTGSDTVILETAWRLFSRELTPGRSFRLLGVGVSGFTEDEEFQLPL 366 >UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCT4_9FIRM Length = 397 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 132/350 (37%), Positives = 191/350 (54%), Gaps = 5/350 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA+VE D+P R+ P+ +GG RGV+STA+Y AR+FGV SAMP Sbjct: 10 RWIMHVDMDAFFASVEQLDHPEYRNRPVIVGGL-SGRGVVSTASYEARRFGVHSAMPMKE 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP + GR+ Y E S IR+IF ++ +EPLS+DEA+LD+T G Sbjct: 69 ALERCPKGIFVEGRYGRYLELSQKIRQIFHEFSPLVEPLSIDEAFLDLTGMERLVGDIPA 128 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + I++ I E LTAS G+AP KFLAK+ASD+ KPNG +I +E + + LP+++I Sbjct: 129 LGLRIKERIKKETGLTASVGLAPNKFLAKLASDLKKPNGLVIIRQSEAASRIAPLPISRI 188 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G SA+ L G+RT GD+ CD L FGK + + G+D R V + R+ Sbjct: 189 FGIGARSASLLTRFGIRTIGDLAACDASFLSPLFGKNTETILRFAHGLDNRPVIPDEKRQ 248 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +D+ + I+ L E+ RL L +K+K DF+ T+ Sbjct: 249 SLGRELTFEKDLRDHAVILEILWNLSQEVGFRLRSA--GLSGYTVTLKMKTQDFKVHTRS 306 Query: 302 HV--WPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P +++ + VRL+G+ V+ L PQ + L Sbjct: 307 LSSDLPLQLDEEIMERVKILTRRNPLRDPVRLLGVTVSHLVPQESSEQNL 356 >UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q2KZS3_BORA1 Length = 360 Score = 412 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 149/355 (41%), Positives = 204/355 (57%), Gaps = 10/355 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKI+H+DMD F+A+VE RD P LR P+ + R V+ A+Y AR+FGV SAM Sbjct: 5 IRKIVHIDMDAFYASVEQRDRPELRGQPVVVAW-TGARSVVCAASYEARRFGVHSAMAVS 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP +P F+ Y+ S +REIFSR+T IEPLSLDEAYLDVT + SAT Sbjct: 64 RAQRLCPDAVYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVTVNKLGLPSAT 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+ IR I E LTASAGVAP KFLAKIASD NKP+G FV+ PA+V FLQ LP+ K Sbjct: 124 AVAEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKPDGLFVLRPAKVLEFLQPLPVRK 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PGVG+V+ A+LE++G+ T GD+ C L FG+ G L E ++G+DER+V ++ Sbjct: 184 VPGVGRVTQARLESLGIHTVGDLATCAPAELEHHFGRHGLRLHELARGLDEREVQPDQPL 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 + V E T D+ ++ ++RL + + K L +KLK D F+ T+ Sbjct: 244 QQVSAENTFERDLR-LADLGEALDRLAARVWEQAR--KKGQLGRTAVLKLKTDRFRLLTR 300 Query: 301 EHVW--PRLNKADLIATARKTWDE--RRGGRGVRLVGLHVTLLDP--QMERQLVL 349 P + +L A AR+ RL G+ ++ Q RQ L Sbjct: 301 SLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRLAGVGMSNFTDPAQSARQPDL 355 >UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS21_DESOH Length = 384 Score = 412 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 141/349 (40%), Positives = 200/349 (57%), Gaps = 6/349 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA+VE D+P R + +G S RGV++ A+Y AR FGV SAMP AL Sbjct: 2 ILHVDMDAFFASVEQLDHPEWRGRAVVVGRS-SGRGVVAAASYEARVFGVHSAMPMSRAL 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP + P R + YKE S + EI + +E +S+DEAYLD++ HG+ I Sbjct: 61 KLCPDAIVAPPRMERYKEVSARVMEILDAVSPLVEQVSIDEAYLDISGCERLHGTPETIG 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + I++ +F+ L +T S GVAP+KFLAKIASDMNKP+G VI P F++TLP+ K+PG Sbjct: 121 KNIKKQVFDTLGITCSVGVAPIKFLAKIASDMNKPDGLMVILPEAADRFIETLPVHKVPG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG V+ +L MG+ T GDV + +L K+ GKFGR L E S+GID+ V KSV Sbjct: 181 VGSVTKKQLALMGIETLGDVVRLPDGVLSKKLGKFGRRLKELSRGIDDSRVVPWHPAKSV 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 E T++ D E + R ++ R L K+ + +K+K+ DF QTT++ Sbjct: 241 SEETTLSRDTAEKQELRHHLLRQAGDVCRHLQKL--NARARVVFIKIKYADFSQTTRQTT 298 Query: 304 W--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL-DPQMERQLVL 349 P + + A +++ + VRL+G+ VT L Q+ L Sbjct: 299 LDAPVQSSDTIYRQASALLEKQTLAQKVRLIGVGVTELVVTSGGVQMEL 347 >UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_9GAMM Length = 390 Score = 412 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 143/357 (40%), Positives = 198/357 (55%), Gaps = 10/357 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMD FFAAVE RD P LR +P+ +GG RGV++T +Y AR+FG+RSAM Sbjct: 28 IRKIIHVDMDAFFAAVEQRDRPELRGLPVIVGGDPNVRGVVATCSYEARRFGIRSAMSAA 87 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + R DAY+E S + I YT+ +EPLSLDEA+LDVT + A Sbjct: 88 RARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTDGTLAV 147 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EI I E LTASAGV+ K LAK+ASD KP+G FVI P AFL LP+ K Sbjct: 148 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERGLAFLAPLPVGK 207 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG + KL AMG+ T D++ L L+ FGK G ++ ++ IDER V R R Sbjct: 208 LHGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPSRQR 267 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG ERT ++++ S ++ + ++ RL + L +K +F DF T+ Sbjct: 268 KSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVL--HLAGHTVHIKARFPDFTTVTR 325 Query: 301 EHVW--PRLNKADLIATARKTWDE-RRGGRGVRLVGLHVTLLD-----PQMERQLVL 349 + + + A + D VRL+G+ ++ L ++ Q+ L Sbjct: 326 AYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGITMSGLVNVLAASRVAHQMNL 382 >UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=DPO4_SHEWM Length = 364 Score = 412 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 198/337 (58%), Positives = 247/337 (73%), Gaps = 1/337 (0%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMDC+FAAVEMRD P LR PIA+GG +RRGVIST NY AR FGVRSAM +G Sbjct: 5 LRKIIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARAFGVRSAMASG 64 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLCP L L+PGR YKE S IR+IF+RYT IEPLSLDEAYLDVT+ C GSAT Sbjct: 65 YALKLCPDLILVPGRMSVYKEVSAQIRDIFARYTDLIEPLSLDEAYLDVTECKQCQGSAT 124 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIAQ IRQ IF LTASAG+APVKFLAK+ASD+NKPNGQ+VITP + +F+ TLPL K Sbjct: 125 LIAQAIRQEIFEVTGLTASAGIAPVKFLAKVASDLNKPNGQYVITPDMISSFITTLPLTK 184 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KLE +GL TCG++Q L++RFGKFG+IL ER+QGIDER ++ R R Sbjct: 185 IPGVGKVTGKKLEDIGLTTCGELQAYPKSELIERFGKFGKILIERAQGIDERAISPHRER 244 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVGVE T+A+DI+ +C ++ +L EL R+++ I +Q VKLKF+DF+QTT Sbjct: 245 KSVGVETTLAKDIYTLEQCHGVMPQLIQELGARMSRSAKGRSINKQVVKLKFNDFKQTTI 304 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVT 337 EH ++ ++ + + GRG+RL+G+ V Sbjct: 305 EHRSDEMSVKLFYELLAQSLER-QQGRGIRLLGVSVG 340 >UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria RepID=B9M459_GEOSF Length = 420 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 116/354 (32%), Positives = 192/354 (54%), Gaps = 10/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDM+ FFA+VE +++P LR P+A+ GS +R +++T +Y AR FGV++ M Sbjct: 13 RIIMHVDMNAFFASVEQQNDPRLRGKPVAVVGS-SKRTIVTTCSYEARAFGVKTGMALWE 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A CP+L L+ G+ Y S+ I ++ +T +E S+DEA+LD++ S+ G+ Sbjct: 72 AKSCCPNLILVVGKNREYTRISSLIMKLMYDFTPLVETFSIDEAFLDISGSLSLFGTPEN 131 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA ++ I ++ LT S G+AP K LAK+ASDM KP+G VI PAEV + P+ + Sbjct: 132 IASLLKARIGDQFGLTCSIGIAPNKLLAKLASDMQKPDGLTVIKPAEVALTMDRTPIRDM 191 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR- 240 G+GK + L +G+RTCGD+ + + +L ++FG G L G+D+ V + Sbjct: 192 CGIGKKTEKSLTMLGIRTCGDLGRFPVKLLRQKFGIVGEALHLMGLGVDDSPVVPQEESD 251 Query: 241 --KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD-FQQ 297 KSVG T+ +D+ + + +L + RR+ + + + +++ D F Sbjct: 252 LVKSVGHSMTLEKDLEKREDILRYLLQLAEMVGRRMR--RYGVAGKTVCLSVRYADFFTN 309 Query: 298 TTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 +++ P A++ A D + VRL+G+ ++ L Q E QL L Sbjct: 310 FSRQLTLPEYTNLSAEIYRGAVTLLDSVELTQPVRLLGVKLSNLRHQDE-QLPL 362 >UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PAP1_CLOTS Length = 414 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 7/354 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPT 59 MR I+H+DM+ F+A+ E + +L+ P+ + G +R G++ TA+Y ARK+G+++ MP Sbjct: 1 MRHILHIDMNAFYASCEQSKDKSLKGKPVVVAGDPSKRHGIVLTASYEARKYGIKTGMPN 60 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A LC L FD+Y + S + I ++ +E S+DEA++DVT GS Sbjct: 61 WQARTLCNDAIFLKPDFDSYIQYSIKMINILKEFSPLVEQFSIDEAWVDVTGCEDLFGSP 120 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA +I+ I + L L S G++ K +AK+AS++ KP G + ++ + L + Sbjct: 121 IEIAHKIQSRIKDSLDLPCSIGISENKLVAKMASELKKPLGITELPLEKIKDMIWPLDVE 180 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 + +G + KL++ G+ T GD+ + L+ FGK G+ ++ + GID V + Sbjct: 181 NLIWIGSARSKKLKSFGINTIGDLANTPMTFLINLFGKPGKDIYYFANGIDLSPVRPYAI 240 Query: 240 -RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS G T+ D + + L + R+ K + + + +K ++F+ Sbjct: 241 TAKSFGNTITLPRDYTDIEDIKRGFLSLSEMVGSRMR--KQNFMGKTVSITVKDNNFKSI 298 Query: 299 TQEHVWP-RLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDP-QMERQLVL 349 T+ + D+ A K + E +R++G+ V+ L QL L Sbjct: 299 TRSRTIDYTVLTEDIFNAAMKLFKENYDTNFKIRMLGVSVSNLVKIDENIQLCL 352 >UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteria RepID=Q1IRF1_ACIBL Length = 425 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 132/356 (37%), Positives = 195/356 (54%), Gaps = 11/356 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I HVDMD FF +VE +P+L+ + +GG R+ RGV+S A+Y ARKFGV SAMP Sbjct: 16 RVIFHVDMDAFFVSVEELFDPSLKGKAVVVGGHRDERGVVSAASYAARKFGVHSAMPLRT 75 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP + G + Y+E S E+ +++ ++E S+DEAYLD+T + HG Sbjct: 76 AAKLCPDAIFVNGHPERYREYSGKAFEVLKKFSPKVEMASIDEAYLDMTGTERLHGPPLK 135 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A + Q + +E +L S G+ + +AK+ SD KPNG I P + +FL L + KI Sbjct: 136 AAHALHQFMKSETKLNCSIGIGTSRLIAKVCSDQAKPNGVLYIVPGQEASFLAPLSVRKI 195 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGID-----ERDVNS 236 PGVGKV KL +G++ GD+ K D L +RFG++G L +S+G+D +RDV Sbjct: 196 PGVGKVFEQKLNEIGIKKVGDLAKLDDAFLRERFGEWGLALAGKSRGLDAGGYFDRDVAV 255 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 + KS+ E T D + EA+I RL + RR+ + +L +KL++ DF Sbjct: 256 DEGPKSISHEHTFNTDTRDQEKLEAMIARLSEMVCRRVREH--ELHARTVQIKLRYSDFT 313 Query: 297 QTTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVL 349 T+ H P + TAR + + GR +RL+G+HV + +QL L Sbjct: 314 TITRAHSLEQPTQLDTVVAETARTLFRDNWQRGRTIRLIGVHVAGF-DDVPQQLDL 368 >UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM3_DESBD Length = 412 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 134/352 (38%), Positives = 176/352 (50%), Gaps = 9/352 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FF +VE D+P L+ P+ IG S RGV S A+Y ARK+G+RSAMP Sbjct: 13 RVILHLDMDAFFTSVEQADDPLLQGKPVVIGQSL--RGVASAASYEARKYGIRSAMPIVQ 70 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCPH LPGR Y+E S I I +E S+DEAY D++ + G Sbjct: 71 AKKLCPHAVFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYADISGTRRIFGPPEN 130 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ ++ I LT S G+AP KFLAKIASD NKP G I PA+VPAFL+ LPL +I Sbjct: 131 IARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKPGGLTFIPPADVPAFLRDLPLGRI 190 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGK +L +G+ T V + GK G L +R+ GID+ V K Sbjct: 191 PGVGKQFQEELRRIGVTTIPHVLAHPRTYWNELMGKRGAFLHDRACGIDDSPVVPGSDPK 250 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S E T+ D + E + + R L + L +K+KF DF T+ Sbjct: 251 SCSAENTLDRDTLDRTLLERWLLIQAERIGRELRGLGKKGL--TVTLKIKFQDFSSITRS 308 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P ++ AR + R VRL+G V+ Q L L Sbjct: 309 RTLARPTDITTEIFEAARMLLTAEKLPRPVRLIGTGVSNFR---FVQAELPL 357 >UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae RepID=DPO4_STAHJ Length = 358 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 145/351 (41%), Positives = 202/351 (57%), Gaps = 5/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+IIH+DMD FFA VEMRDNP L+ P+ +GG RGV+STA+Y ARK+GV SAMP Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPTLKGKPVIVGGKASTRGVVSTASYEARKYGVHSAMPMSQ 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP+ + RFDAY+EAS I IF YT +EP+SLDEAYLD+T V SA+ Sbjct: 64 AHKLCPNGYYVRARFDAYREASAVIMSIFKSYTDIVEPMSLDEAYLDITHLVRPDLSASK 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA IR+ IF + LT+SAGV+ KFLAK+AS MNKPNG VI V L L + Sbjct: 124 IATFIRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPNGMKVIDYNNVNDILMNLDIGDF 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGK S + + T D+ L++ FGK GR L+ +++GID +V + R+RK Sbjct: 184 PGVGKASKKVMHNHDIYTGKDLYDKTEFELIRWFGKRGRGLYLKARGIDHSEVKATRVRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SVG ERT + D++ E I L + RL+K++ + VKLK ++ +++ Sbjct: 244 SVGTERTFSTDVNDDEEILQKIWELSGKTAERLSKLQK--SGSTVTVKLKTYQYETFSKQ 301 Query: 302 HVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVL 349 D+ A +++ + +RL+G+ V L+ + + Sbjct: 302 RSLREAVSRDIDIYNVAYDLYNDLKDPDVPIRLIGVTVGNLEQSRYENMTI 352 >UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus RepID=C5D272_GEOSW Length = 414 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 112/356 (31%), Positives = 184/356 (51%), Gaps = 11/356 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPAR-KFGVRSAMPT 59 R I HVD + FFA+ E+ +P+L+ + + G + R GV+ ANY A+ +FG+ + MP Sbjct: 10 RVIFHVDCNSFFASCEIARDPSLKGKAVVVAGDPKERKGVVLAANYIAKQRFGIYTTMPL 69 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A K CP L +L F Y+E S + + + +T +E S+DE YLD+TD GS Sbjct: 70 WEAKKRCPQLVVLKPDFHLYREISEKVFQFLATFTPVLERASIDEGYLDITDCYSL-GSP 128 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA++I++ + L + S G+AP KFLAK+AS+M KP G V+ +VP L LP+ Sbjct: 129 LDIAEQIQKELLQTLHIPVSIGIAPNKFLAKMASNMKKPLGITVLRKRDVPKVLWPLPVQ 188 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 ++ G+G +A KL ++G+ T G++ K + V L G G L E + GID R V+ E Sbjct: 189 EMHGIGDKTAKKLNSIGIFTIGELAKAEKVTLQNLLGITGVRLKEWANGIDPRPVDPESG 248 Query: 240 R--KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KS+G T+ ++ ++ L + R+ + ++ + + +++ +FQ Sbjct: 249 EKWKSIGSSTTLPRNVTEERILLEVLRDLAQSVSNRMK--QKGVVSSTVQIMIRYSNFQT 306 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVL 349 T+ W P ++ A G VRL+G+ + + E +QL L Sbjct: 307 ITRSKTWENPFQEAEEIFQRAVYLLKRHWNGNPVRLLGITAVDVFDKKEAVKQLDL 362 >UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_LEGPL Length = 355 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 176/352 (50%), Positives = 233/352 (66%), Gaps = 4/352 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIH+DMDCF+AA+EMRD P L + PIA+GG + RGVI+T NY AR+FG+RSAMPT Sbjct: 4 IRKIIHIDMDCFYAAIEMRDFPELANKPIAVGGDAKHRGVIATCNYAARQFGIRSAMPTA 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLC L L P R D Y++ S +IR + + YT IEPLSLDEAYLDVT+S C GSAT Sbjct: 64 HALKLCRELILRPVRMDVYQKESQYIRSLLTEYTDLIEPLSLDEAYLDVTESTQCQGSAT 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EIR I+ QLTASAG+AP K LAKIASD +KPNGQ VI P +V AF+ LP+ K Sbjct: 124 WIAEEIRARIYQTRQLTASAGIAPNKSLAKIASDWHKPNGQMVIRPEDVSAFVLDLPVRK 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVG KL A+ ++TC D+Q+ + LL++FG G+ L+E ++GID R VN ER+R Sbjct: 184 LFGVGPKMEEKLGALNIKTCADLQRYSIEYLLQKFGTMGQRLYELARGIDNRPVNPERIR 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ VE T +D+ + C A++ L LE R+ + I VKLKF+DFQQTT Sbjct: 244 KSISVEETYPKDLPNSEACLAVLPDLMARLEARIQRAGKISGIHNLFVKLKFNDFQQTTI 303 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQ-LVLGL 351 E V +++ L ++ + R G VRL+G+ + L + Q + L L Sbjct: 304 ERVMDKIDLIVLRQLIQEGFARR--GMPVRLLGIGI-KLKQENTYQSVQLPL 352 >UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=C9KLE5_9FIRM Length = 395 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 125/342 (36%), Positives = 185/342 (54%), Gaps = 6/342 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++HVDMD FFA++E RD+ R+ P+ +GG RGV+ST +Y AR+FGV SAMP Sbjct: 5 RLVMHVDMDAFFASIEQRDHEEYREKPLIVGGL-SGRGVVSTCSYEARRFGVHSAMPIVR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + G + YK S I IF+RY +EPLS+DEA+LD+T S Sbjct: 64 ARRLCPQGIFVEGDYANYKAVSQQIFAIFARYAPVVEPLSIDEAFLDLTGMELLMESPRA 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A++++ I + L AS G+AP KFLAK+ASD+ KP+G +IT A L LP+ +I Sbjct: 124 YAEKLKAEIREKTGLVASVGIAPNKFLAKLASDLEKPDGLVIITEQTKQAVLDPLPVGRI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVG+ +AA+LEA+ +RT G +++ L++ FG L + GID R V Sbjct: 184 WGVGQKTAARLEALRIRTIGQLRRTPRERLVRAFGAHMADHLLALASGIDTRPVAPREPA 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T DI E ++ L ++ RL + +KL+ DF+ T+ Sbjct: 244 KSIGKEVTFPTDIESAEAVERVLLALSEKVGYRLR--RHGCKGRTVQLKLRLGDFRTYTR 301 Query: 301 EHVWPRLN--KADLIATARKTWDERRGGRGVRLVGLHVTLLD 340 ++ TA + +G+RL+G+ V+ D Sbjct: 302 SRTLAEATCYDREIYETALAFYRALGVKQGIRLLGISVSGFD 343 >UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales RepID=C6CYA7_PAESJ Length = 422 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 190/356 (53%), Gaps = 9/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPA-LRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPT 59 R I+H+DM+ F+ +V + P + P A+ GS E R+G+I T +Y AR G+++ M Sbjct: 13 RVILHLDMNAFYCSVHEAEEPEKYKGKPTAVAGSVELRKGIIVTCSYAARSKGIKTGMTV 72 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A+++CP+L ++ F+ Y++ S +I YT +EP+S+DE Y+D+T S GS Sbjct: 73 RQAMRMCPNLIIIQPDFELYRKYSRGFMKIAREYTPLVEPISIDECYMDITGS-KIFGSP 131 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA+ +++ I E L S GVAP K LAK+ASDM KPNG V+ +VP L P Sbjct: 132 LEIAEALQKRIAEEWTLPCSIGVAPNKLLAKMASDMKKPNGLTVLRLRDVPTILWDKPCD 191 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 + G+GK +A KLE + +RT G + D +L+++FG +G + + GID +V ++R Sbjct: 192 VLHGLGKKTADKLERLRIRTIGQLAAADEELLIRQFGIYGSWMKSAAHGIDHSEVRADRE 251 Query: 240 R-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 + KS+G T+ D+ + I+ L + RRL + L+ + + ++ D Sbjct: 252 QSKSIGHTTTLPYDVTDREDAHRILLNLADQTARRLR--RQKLMASTVQITIRKPDMATI 309 Query: 299 TQEHVW--PRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQLVLGL 351 T+ P + + A + +DE G RL+G+ + L + E + L L Sbjct: 310 TRSSTLRAPTHSTDMIYHEACRLFDEHWKGSEPARLLGVTLQNLTAEEETAVQLDL 365 >UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW5_9BACT Length = 387 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 142/351 (40%), Positives = 200/351 (56%), Gaps = 7/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD FFAAVE RDNP LR P+A+G RGV+STA+Y ARK+GV SA Sbjct: 19 RKIIHIDMDAFFAAVEQRDNPELRGKPVAVG-FDGPRGVVSTASYEARKYGVHSAQSIAQ 77 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + CP+L ++P R D Y + S+ I +IF YT IEP+S+DEA+LDVT + A Sbjct: 78 AKQRCPNLIIVPCRHDYYAKISHQIHQIFQEYTDLIEPISIDEAFLDVTQNKKGIELAVD 137 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EI+ I LTASAG++ KFLAK+ASD KP+G I P + F+ LP+ Sbjct: 138 IAKEIKTRIKEATGLTASAGISYCKFLAKVASDYRKPDGICTIHPDKAYDFIAQLPIEDF 197 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGK + K+ MG+ D++K L++ FGK G I ++ ++GIDER V + R RK Sbjct: 198 WGVGKKTLQKMHFMGIFNGADLRKVSEEHLVEVFGKAGHIFYDFARGIDERPVITYRERK 257 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SVG E+T EDI+ + + EL R+ K +K+KF DF Q T+ Sbjct: 258 SVGCEQTFLEDIYLKTAVIIELYHTVLELLERI--AKSGFEGRTLTLKVKFADFTQITRS 315 Query: 302 HVWPRL--NKADLIATARKTWDE--RRGGRGVRLVGLHVTLLDPQMERQLV 348 ++ K D++ A++ + +RL+GL V+ + R+ Sbjct: 316 ISQEKVLKKKDDILPLAKRLLKQVDYSSAHPIRLLGLSVSNASSEEARKQD 366 >UniRef50_B0TQD1 DNA polymerase IV n=7 Tax=Bacteria RepID=DPO4_SHEHH Length = 358 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 200/357 (56%), Positives = 248/357 (69%), Gaps = 9/357 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+KIIHVDMDCF+AAVEMRD P LR PIA+GG +RRGVIST NY AR+FGVRSAM +G Sbjct: 1 MQKIIHVDMDCFYAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARQFGVRSAMASG 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALKLCP L L+PGR YKE SN IR +F RYT IEPLSLDEAYLDVT+S HC GSAT Sbjct: 61 YALKLCPDLILVPGRMQVYKEVSNQIRAVFERYTDLIEPLSLDEAYLDVTESSHCKGSAT 120 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A+ IR I E LTASAG+APVKFLAKIASD+NKPNGQ+VI P + F++TLPL K Sbjct: 121 LMAEAIRAEILAETGLTASAGIAPVKFLAKIASDLNKPNGQYVIRPEMIEEFVKTLPLIK 180 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+A KL +GL TC D+Q L++RFGKFG +L ERS+GID+R + R R Sbjct: 181 IPGVGKVTAKKLADLGLHTCSDIQAYPEPKLVERFGKFGSVLIERSKGIDKRAILPNRER 240 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVGVE T+A+DIH +C A++ +L EL R+++ D I +Q VKLKF+DF+QTT Sbjct: 241 KSVGVETTLAKDIHTLEQCRAVMPQLIQELGARVSRSAKDRAINKQVVKLKFEDFKQTTI 300 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHV--------TLLDPQMERQLVL 349 EH ++ + + + RG+RL+G+ V + Q+ L Sbjct: 301 EHRSDEISVNLFYQLLEQAMER-QHERGIRLLGVSVGLASNSIASEQADVDSSQMDL 356 >UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LNT4_9FIRM Length = 403 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 128/342 (37%), Positives = 186/342 (54%), Gaps = 5/342 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD F+A+VE RD+P R P+ +GGS RRGV++TA+Y AR FGV SAMP Sbjct: 3 RWIMHVDMDAFYASVEQRDHPEWRGKPVIVGGS-SRRGVVATASYEARAFGVHSAMPAVK 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + RFD YK SN I EI Y IEPLSLDEA++D++ + + Sbjct: 62 ARELCPDAVFVLPRFDVYKSVSNEIHEIMLHYAVEIEPLSLDEAFMDISGLCGKYETLGA 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + I+ I + L ASAG+AP KFLAK+ASD++KP+G +I + L LP+ ++ Sbjct: 122 VGRAIKAEIKEKTGLVASAGIAPNKFLAKLASDLDKPDGLRIIPYGKEKEILAPLPVRRL 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V+ KL G T GD+QK L G ++ S GID+R V + R K Sbjct: 182 WGVGHVTERKLRNAGFLTIGDIQKAPFAKLASVLGNQASLIQRLSFGIDDRAVEASRRIK 241 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +D+ ++ + I + +RL + L +K++F F+ T+ Sbjct: 242 SIGDESTYEKDLTESADIDRQIAIHSDVVAKRLR--RHKLAGRTISLKVRFASFRTVTRS 299 Query: 302 HVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP 341 + ++ A A + GVRL+G+ + L P Sbjct: 300 LSLEEGTDLQEEIYAAALELKKRIYMNEGVRLIGVTASNLAP 341 >UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=Q2S2C0_SALRD Length = 373 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 198/355 (55%), Gaps = 9/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPA-LRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 R+I+HVDMD F+A +E RD P PIA+GG RGV+ TA+Y AR +GV SA P Sbjct: 19 RRIVHVDMDAFYAQIEQRDFPDRYAGKPIAVGGDP-PRGVVQTASYEARPYGVHSAQPAV 77 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L + R D Y+E S IR+I RYT +EPLSLDEAYLDVT+ S T Sbjct: 78 EADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRPSGT 137 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIA+ +R I+ E LTASAGV P KF+AK+ASD++KP+G V+ P E F+ LP+ K Sbjct: 138 LIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQMEFIAQLPIEK 197 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+G V+AAK++ +G++T D+Q+ L+ FGK GR + G D+R V +R R Sbjct: 198 FHGIGPVTAAKMQELGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRPVQPDRDR 257 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG ERT EDI + + + +RL + +KLK D Q +T+ Sbjct: 258 KSVGAERTFPEDIARAETMLDRLSPIAERVAQRLRQANRKG--RTVTLKLKSHDHQVSTR 315 Query: 301 EHVWPRLNKAD--LIATARKTWDE-RRGGRGVRLVGLHVTLLDPQM--ERQLVLG 350 + R +A+ L+ + VRL+G+ V+ L + QL Sbjct: 316 QTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLGISVSSLTDEERAGGQLEFD 370 >UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychrophila RepID=DPO4_DESPS Length = 376 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 137/343 (39%), Positives = 199/343 (58%), Gaps = 5/343 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIH+DMD FFA++E RD P LR P+ +GG RGV++T Y AR++G+ SAM Sbjct: 3 MRKIIHIDMDAFFASIEQRDRPELRKKPLIVGGLPRGRGVVATCCYEARRYGIHSAMSAN 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCPH + R YKE S I IF YT ++EPLSLDEA+LDVT+ + +GSAT Sbjct: 63 RAYKLCPHAVFVKPRMVLYKEVSLQIMAIFREYTKKVEPLSLDEAFLDVTEYLQINGSAT 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A+EI I L+ASAGV+ KFLAKIASD+ KP G + P E F+ L + K Sbjct: 123 LLAREICALIKLRTDLSASAGVSYNKFLAKIASDLKKPGGISTVPPEEARQFIDRLSIGK 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVGK++ +K++++G++T D+++ L+KRFGK G + ++G+DER V + R Sbjct: 183 FYGVGKITKSKMQSLGIQTGKDLRQYSKDFLMKRFGKAGSFFFYNARGLDERPVCPYQNR 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T+ +D + E I+ L L + L L +K+++ DF TT+ Sbjct: 243 KSIGKETTLVQDTNRPEEIRDILINLSSLLGKALE--NNSQLAQTLTLKIRYSDFTTTTR 300 Query: 301 EHVW--PRLNKADLIATARKTW-DERRGGRGVRLVGLHVTLLD 340 P AD+ + + +RL+G+ ++ L Sbjct: 301 SLSLQKPFSCPADIEECLPSLLTNCNLTHKPIRLLGISLSKLT 343 >UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=DPO4_EXIS2 Length = 360 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 136/351 (38%), Positives = 195/351 (55%), Gaps = 6/351 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD F+A+VE RD P L+ +P+ +GG RGV++T +Y ARK+G+ SAMP+ Sbjct: 4 RKIIHVDMDAFYASVEQRDRPHLKGVPVIVGGPPHARGVVATCSYEARKYGIHSAMPSRR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + RF+ Y+ S I E+F T +EPLSLDEAYLDVT++ SAT Sbjct: 64 AFQLCPRAVFVRPRFEVYRAVSAQIMELFLEVTPLVEPLSLDEAYLDVTENNLQMTSATH 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I I LTASAGV+ K +AKIAS KPNG V+ P V FL L + + Sbjct: 124 IAQYILAEIKRRTGLTASAGVSNSKLVAKIASGHQKPNGLTVLPPDAVLPFLSGLKIGDL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVGKV+ L+ G T D+Q+ + L G+ G L+ + G DER V R R Sbjct: 184 HGVGKVTEQTLQKHGFNTVADIQQSPIAELRGLLGRDRGTELYTMAHGEDERMVRPHRER 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T ED ++R + + L + +L+ +K K +DFQ ++ Sbjct: 244 KSIGSESTFEEDTEDIDTIFETLKREALSVVKTLN--QKELVCRTVTIKWKTEDFQSRSK 301 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD-PQMERQLV 348 + + ++ L+ K ++E +RL+G+ V+ L+ P + +QL Sbjct: 302 RYTFLEETADEDTLLRVTTKLFNEIEFSGPIRLIGMSVSHLEAPPLSKQLT 352 >UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=DPO4_NEIMF Length = 352 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 148/349 (42%), Positives = 209/349 (59%), Gaps = 8/349 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE+R+ P L+ P+ + R VI A+Y AR+FG+ SAM Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWE-GARSVICAASYEARQFGLHSAMSVAT 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP +P FD Y++ S I +F RYT IEPLSLDEAYLDVT + A+ Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYASE 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A+EIR IF E LTASAG+AP KFLAKIASD KPNGQFV+ P +V AFL+TLPL KI Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ K++++G+RT GD+++ + LL FG++G L++ +G DER V +ER R Sbjct: 183 PGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAERERL 242 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 + E T+ ED+ + + L +L R + ++ +KLK DF+ T+ Sbjct: 243 QISTEITLPEDLP-LEQAAGHLPHLAEDLWR--QITRKNVEAQSVTLKLKTYDFRIITRT 299 Query: 302 HVWPR--LNKADLIATARKTWDERRG--GRGVRLVGLHVTLLDPQMERQ 346 + + A L+ A+ RL+G+ V L P+ ++Q Sbjct: 300 LTYSSVLPDCAALLQAAQMLIARVPPQTEDAFRLIGIGVGHLVPKNQQQ 348 >UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=DPO4_XANOM Length = 359 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 151/355 (42%), Positives = 203/355 (57%), Gaps = 10/355 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKI+HVDMD F+A+VE RD+P LR P+ + R R V+ A+Y AR FG+RSAMP Sbjct: 1 MRKIVHVDMDAFYASVEQRDDPGLRGKPVVVAW-RGARSVVCAASYEARTFGIRSAMPAV 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP+ +P F YK S +REIF R+T +EPLSLDEAYLDVT + AT Sbjct: 60 RAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQAKTGMQLAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IAQ IR I E +LTASAG+AP KFLAKIASD KP+GQFVI P+ + AFL L + + Sbjct: 120 EIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRIDAFLLPLKVNR 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV KL A+G+ T D++ L L FG FG+ L+ R++GIDER V ++ Sbjct: 180 IPGVGKVMDGKLAALGIVTVADLRLRPLEELQAHFGSFGQSLYRRARGIDERPVEPDQDV 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 +SV E T +ED+ + I RL + LA + + + +KLK +F+ T+ Sbjct: 240 QSVSSEDTFSEDLA-LDALDTHILRLAEKTW--LATRRTERIGRTVVLKLKTSNFRILTR 296 Query: 301 EHV--WPRLNKADLIATARKTWDERRGG--RGVRLVGLHVTLL--DPQMERQLVL 349 P +++ L A RLVG+ ++ + Q L Sbjct: 297 SCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFSNVEEGAVQGQL 351 >UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R7_9GAMM Length = 359 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 182/353 (51%), Positives = 236/353 (66%), Gaps = 5/353 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVD D F+A+VEMR++P+L P+A+GGS +RRGVI+T NY ARKFGVRSAMP+ Sbjct: 4 RKIIHVDADSFYASVEMREDPSLAARPVAVGGSAQRRGVIATCNYEARKFGVRSAMPSSR 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP L +L RFD Y+E S +IF YT +IEPLSLDEAYLDV+D HGSATL Sbjct: 64 ALQLCPGLIILSARFDLYREVSQQFHQIFKDYTDKIEPLSLDEAYLDVSDCEQFHGSATL 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IR+ I EL LT SAGVAP KFLAK+ SD +KP+G F ITP +V F+ LP+++I Sbjct: 124 IAQDIRRRIKQELNLTVSAGVAPNKFLAKVGSDWDKPDGCFTITPEDVAEFVVDLPVSRI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG V+AAKLE +G TCG++Q L +L+KRFGK+G L + + G+D+RDV + R RK Sbjct: 184 NGVGAVTAAKLEKLGATTCGELQSIPLEVLVKRFGKYGSRLAKVAHGLDDRDVQTSRTRK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ VE T DI + + + RL ELE R K++ ++ VK+KFD+F+QTT E Sbjct: 244 SISVENTYHSDIEQLQQMDQALTRLLDELEGRFHKIEERYRPHKRFVKVKFDNFEQTTIE 303 Query: 302 HVWPRLNKADLIATA-RKTWDERRG--GRGVRLV--GLHVTLLDPQMERQLVL 349 + P + L A R VRL+ GL + L +ME QLVL Sbjct: 304 EIIPDSGEHWLNEKAYHALLHSAWQRGSRPVRLLGAGLRLEPLHKEMEMQLVL 356 >UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_PSEU2 Length = 354 Score = 402 bits (1034), Expect = e-111, Method: Composition-based stats. Identities = 169/350 (48%), Positives = 222/350 (63%), Gaps = 5/350 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DCF+AA+EMRD P L P+A+GGS ERRGVI+T NY AR +GVRSAM + Sbjct: 4 RKIIHIDCDCFYAAIEMRDEPDLAGKPLAVGGSAERRGVIATCNYEARAYGVRSAMSSRH 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP LT++ R DAYKEAS I IF YT IEPLSLDEA+LDV+++ H GSAT Sbjct: 64 ALKLCPDLTIVKPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVSEAGHFSGSATR 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IR+ + N+L +T SAGVAP KFLAKIASD KPNG FVITP +V F+ +LP+ K+ Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEEFVASLPVTKL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A KL +G+ C D++ + L++ FG FG LW + GID+R V ++ R+ Sbjct: 184 HGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGERLWSLAHGIDDRPVQNDSRRQ 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV VE T D+ + C + L L R+A+++ + VK+KF DF QTT E Sbjct: 244 SVSVENTYDTDLPDLAACLEKLPDLLETLSGRMARMEGQYRPGKPFVKVKFHDFTQTTLE 303 Query: 302 HVWPRLNKADLIATARKTWDERRGGRGVRL--VGLHVTLLDPQMERQLVL 349 + + + GG+ VRL +G+ + L QL L Sbjct: 304 QSGAGRDLGSYEQLLAQAFAR--GGKPVRLLGIGVRLHDL-RAAHEQLEL 350 >UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DPO4_BACCR Length = 415 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 127/355 (35%), Positives = 205/355 (57%), Gaps = 10/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+HVDM+CFFA+VE+ +P+L+ P+A+ G+ +ER+G+I T +Y AR++G+R+ MP Sbjct: 13 RVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLW 72 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L + F Y+EAS + ++ SR+T +I+P+S+DE YLD+TD GS Sbjct: 73 EAKRLCPQLVVRRPNFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYAL-GSPL 131 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+ I+Q + ELQL S G+AP FLAK ASDM KP G V+ ++P + L + Sbjct: 132 EIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLSVEA 191 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER-- 238 + G+G+ +A KL + + T + K D ++ + GK G L +R++G D+R+V+ + Sbjct: 192 MHGIGEKTAEKLNEIHIHTIEQLAKGDEHIIRAKIGKHGIDLQKRAKGTDDREVDPSQMG 251 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KSVG T ++D+ E ++ERL + +RL K L+ + +K+ D + Sbjct: 252 QHKSVGNSMTFSKDMDEEKELLDMLERLSKSVSKRLQ--KRTLVSYNIQIMIKYHDRRTV 309 Query: 299 TQEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVL 349 T+ D+ A + W + G VRL+G+ T ++ + E +QL L Sbjct: 310 TRSKQLKNAIWEERDIFQAASRLWKQHWDGDSVRLLGVTATEIEWKTESVKQLDL 364 >UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damage-inducible protein P n=12 Tax=Acinetobacter RepID=B0VP90_ACIBS Length = 363 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 153/338 (45%), Positives = 211/338 (62%), Gaps = 8/338 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MRKIIH+DMD F+A+VE+R+ P LR +P+ I S R VI+ A+YPAR+FG+RSAM Sbjct: 1 MRKIIHIDMDAFYASVELRERPDLRHLPVVI-SSHHPRAVIAAASYPAREFGLRSAMSMS 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCP + ++ F+ Y+ S I IF +YT+ IEPLSLDEAYLDVT+++ SAT Sbjct: 60 QARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIASAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A IR+ IF + LTASAGVAP KFLAK+ASD NKPNG FVI P++V +F+Q LPL K Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQDLPLKK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KL+ + L T GD+QK + +L+ FGK+G+ L+ +QGID R V +ER R Sbjct: 180 IPGVGKVTQEKLQQLELHTLGDLQKIEEAVLVHHFGKYGQQLYLYAQGIDNRPVQAERAR 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 + + E T D ++C++ L ++ + L K L +KLK +FQ Sbjct: 240 QQISKETTFDSDF-TLAQCQSYWHGLAEKVWQSLE--KKQLNARGVNIKLKLKNFQTLQH 296 Query: 301 EHVW--PRLNKADLIATARKTWDER--RGGRGVRLVGL 334 + P ++ DLI +E RL+G+ Sbjct: 297 SKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGV 334 >UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class) RepID=A5CQW8_CLAM3 Length = 430 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 130/351 (37%), Positives = 179/351 (50%), Gaps = 7/351 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+H+DMD FFAAVE+ + P LR P+ +GGS RGV+++A Y AR+FGVRSAMP A Sbjct: 22 TILHIDMDAFFAAVELLERPELRGTPVIVGGS-SGRGVVTSATYEARRFGVRSAMPMAQA 80 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L+LCP T++ G + Y S + IF T +EPLS+DEA+LDV + GS I Sbjct: 81 LRLCPQATVIGGHMEKYAHWSRVVMGIFRDVTPLVEPLSIDEAFLDVAGARGLFGSPAEI 140 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 IR+ + E LT S G A KF+AK+AS KP+G VI AE FL LP+ + Sbjct: 141 GAMIRRRVHAETGLTCSVGAASTKFVAKLASTRCKPDGLLVIPAAETLPFLHALPVGALW 200 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRK 241 GVGK + L GLRT D+ L L G G L + S G D R V++ R K Sbjct: 201 GVGKTTEEALLRRGLRTVADIADTPLPALQSMLGESAGARLHDLSWGRDPRRVSTHREEK 260 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +D+ + + RL + L +KL++ DF+ T+ Sbjct: 261 SMGHENTFHDDVTDPEIVRRELLGQATRVAERLR--RAGLTARTVSLKLRYSDFRTITRS 318 Query: 302 HVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVL 349 P + R +++ R G +RLVG+ LD R + L Sbjct: 319 RTLSEPTDVARRIYDEIRDVYEQVARPGDRIRLVGVRAEQLDDADNRAVAL 369 >UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWI6_HALOH Length = 385 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 121/351 (34%), Positives = 187/351 (53%), Gaps = 6/351 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGG-SRERRGVISTANYPARKFGVRSAMPTGM 61 I+HVDMD FFA+VE DNP R P+ +GG E RGV+STA+Y ARK+GV+SAM Sbjct: 4 DIMHVDMDAFFASVEQLDNPEFRRKPVIVGGIDLENRGVVSTASYEARKYGVKSAMSVVE 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + GR Y+E S I IF+ YT +E +S+DEA+LD+T GS+ Sbjct: 64 ARRLCPEGIFVKGRHSRYREISEKIFRIFNTYTPLVEKVSIDEAFLDLTGCHRLFGSSVE 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I ++I+ I +L LTAS G++ KFLAK+AS M+KP+G F+I V L L + ++ Sbjct: 124 IGKKIKNKIKEQLGLTASIGLSYNKFLAKLASGMDKPDGFFIIDDNNVDKILNKLCVGEV 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+GK + L + G++T G ++ L GK G L+ ++GID+R V K Sbjct: 184 WGIGKKTEQLLLSKGIKTVGMLRHLSKSDLKGILGKQGLQLYYLARGIDDRHVEPGSDIK 243 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ E T ++D+ E + + + + RRL K L + +K+++++ T+ Sbjct: 244 SISHEETFSDDLIDPDEVMSHLMNMSERVARRLR--KNCLKGSTVFIKVRYNNRVTLTRR 301 Query: 302 HVWPRL--NKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVL 349 + + T + + +RL+G+ + L QL L Sbjct: 302 TTIKEYVDDTDSIYRTGLLLIKKHNLLSKPIRLLGIGMANLTDNNGIQLSL 352 >UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica RepID=DPO4_RHOBA Length = 396 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 143/351 (40%), Positives = 204/351 (58%), Gaps = 8/351 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+A+VE RD P LR P+ +GGS E RGV++ A+Y AR++G+ SAMP A+ Sbjct: 2 ILHVDMDAFYASVEQRDRPELRGRPVVVGGS-EGRGVVTAASYEAREYGIHSAMPGSRAI 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCPH + GR D Y +REIF R+T ++PLSLDEA+LDV+ ++ HGS I Sbjct: 61 KLCPHADFVRGRLDHYASVGRAVREIFHRFTPVVQPLSLDEAFLDVSGTIRLHGSPREIG 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR+TI EL L AS G+AP+KF+AKIASD+ KPNG + V FL LP++++ G Sbjct: 121 INIRETIRRELDLPASVGIAPLKFVAKIASDIGKPNGFVEVPADGVREFLDPLPVSRLWG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VGKV KL+ +G RT D++ DL L + G++G LW + GID R V + L K + Sbjct: 181 VGKVGQTKLQRLGYRTIADLRVKDLDALKSQLGRWGEHLWNLANGIDRRQVVVDHLAKGI 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G ERT AED+ A++ L + R + L + +K + +DFQ ++ Sbjct: 241 GHERTFAEDLSDIESLNAVVSYLSEQTAR--RLRRARRLASTITLKYRREDFQTFSRARK 298 Query: 304 W--PRLNKADLIATARKTWDERRGGRG--VRLVGLHVTLLDPQME-RQLVL 349 P + +++ A + E R VRL+G+ + L +QL L Sbjct: 299 LSTPTDSTLEILQVAEELLLEMRSREPRSVRLLGISLGGLTDADAPKQLHL 349 >UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=C1F962_ACIC5 Length = 374 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 152/346 (43%), Positives = 198/346 (57%), Gaps = 8/346 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKI+HVDMD F+A+VE RD P LR P+ + R RR V+ A+Y AR+FGVRSAMP Sbjct: 14 RKIVHVDMDAFYASVEQRDAPELRGKPVVVAW-RGRRSVVCAASYEARQFGVRSAMPAVT 72 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP +P F YK S +REIF R+T IEPLSLDEAYLDVT + +AT Sbjct: 73 AERLCPQAIFVPPDFTRYKAVSRAVREIFERHTDLIEPLSLDEAYLDVTHNKTGLPTATK 132 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A IR+ I EL LTASAGVAP KFLAKIASD KP+G FVI P ++ FL L + +I Sbjct: 133 VAITIRRQIREELSLTASAGVAPNKFLAKIASDWRKPDGLFVIQPQDLATFLPPLAVGRI 192 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ +L +G+RT GD+Q DL L FG++G L+ ++G+D V R K Sbjct: 193 PGVGKVTEERLARLGIRTAGDLQHYDLATLESNFGRYGLRLYHLARGVDHSPVTPNRPTK 252 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV E T DI S E +I RL ++ A + + +KLK DF T+ Sbjct: 253 SVSAEDTFEADIP-LSATEPVIRRLSEKVWN--ASRREARIARTVVLKLKTGDFHIHTRS 309 Query: 302 HVW--PRLNKADLIATARKTWDERRGG--RGVRLVGLHVTLLDPQM 343 P + +L A A + G R RL+G+ ++ Sbjct: 310 LTPETPPASCEELTAIALSLRERVDLGADRLYRLIGVGLSNFRDPE 355 >UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=DPO4_METMJ Length = 360 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 121/354 (34%), Positives = 185/354 (52%), Gaps = 8/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 R ++HVDMD FFA++E+R +P+L P+ +G + RGV+ST +Y AR++GV S MP Sbjct: 6 RIVLHVDMDSFFASIEVRRDPSLAGRPVIVGADPKGGAGRGVVSTCSYEARRYGVHSGMP 65 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A LCPH LP Y S I + SR+ RIE +S+DEAYLDV+D+ + Sbjct: 66 ISRAFDLCPHGVYLPVDRPFYASVSVEIMALLSRHAGRIEQVSIDEAYLDVSDA-GSFPA 124 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A I++ + E LT S GVAP K +AKIASD KP+G ++ P EV FL +LP+ Sbjct: 125 AGALAAAIKREVREETGLTCSVGVAPGKAVAKIASDFQKPDGLTIVRPDEVAGFLASLPV 184 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 +IPG+GK + L G+ T GD+ + D+ ++ R G+ G + ++GID+ +V Sbjct: 185 GRIPGIGKKTGEDLRQAGILTVGDLARRDVQEVIARLGRSGVRVHHLARGIDDGEVQGRE 244 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+ E T D + L ++ L +L VK+++ FQ Sbjct: 245 GCKSISRETTFEADTADPPVLAGTLAELADDVAETLRAD--NLRCRTVTVKVRYRGFQTH 302 Query: 299 TQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 T+ P + + A G VRL+G+ +++L+ RQ + Sbjct: 303 TRSRTLPRFTSDPETIRRAASGLLLPFLNGEPVRLIGVRLSMLEGGCTRQASID 356 >UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomycetales RepID=D1C0B2_XYLCX Length = 430 Score = 397 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 172/353 (48%), Gaps = 10/353 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA E+ P LR +P+ +GG RGV+ A Y AR FGVRSAMP A+ Sbjct: 23 IMHVDMDAFFALCELARRPELRGLPVIVGGR--GRGVVLAATYEARVFGVRSAMPMVSAM 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP ++P Y + S + + T +E +S+DEA+LDV+ + G T+I Sbjct: 81 RLCPQAVIVPPDHRRYTDVSRSVMATMAEITPIVEQISIDEAFLDVSGARRRLGPPTVIG 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 +R + +T S G+A KFLAK+AS KP+G ++ FL+TLP+ + G Sbjct: 141 ARLRAHVQAVHGVTCSVGIAKNKFLAKLASTHAKPDGMLLVPDEASVPFLRTLPVGALWG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKS 242 VG+ + A L G+ + + D+ L G G L + + G D R V +S Sbjct: 201 VGEKTEAVLARWGITSVAQLADTDVRTLQAAVGVVHGAHLHDLAWGRDPRPVVPTERERS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G E T D H + EA + L ++ R + ++ +K++ +DF+ T+ Sbjct: 261 IGNETTFGSDQHDLAAVEARLLELCDKVAARCRE--QGVVTRTVALKVRTNDFRTLTRSR 318 Query: 303 VW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQ--MERQLVLG 350 P DL AR+ G VRLVG+ L + +QL L Sbjct: 319 TLDGPTDVARDLYRVARELLAAVDLRGLPVRLVGVRAENLQERAGTAQQLTLD 371 >UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 Length = 353 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 134/344 (38%), Positives = 200/344 (58%), Gaps = 8/344 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMP 58 RKIIH+DMD FFAAVE++DNP LR P+ IG RGV+ST +Y AR FGV SAM Sbjct: 12 RKIIHIDMDAFFAAVEIKDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYEARAFGVHSAMS 71 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 + A + CP + G ++ YK IR IF RYT IEP+S+DEAYLDVT++ S Sbjct: 72 SKEAYERCPQAVFISGNYEKYKAVGLQIRAIFKRYTDLIEPMSIDEAYLDVTENKLGIKS 131 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A IA+ I++ I+ EL LTASAG++ KFLAK+ASD KP+G VI P + FL+ + + Sbjct: 132 AVKIARLIQKDIWQELHLTASAGISYNKFLAKMASDYQKPHGLTVILPEQAEDFLKQMDI 191 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 +K GVGK + +L MG+ T D+ + V L+ RFG+ G L+ +++GI V S R Sbjct: 192 SKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKARGIHNSPVKSNR 251 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 +RKS+G E+T + + + + + L ++ L + + +K++++DF Sbjct: 252 IRKSIGKEKTYGKILRAEEDIKKELTLLSEKVA--LNLHQQEKAGKIVILKIRYEDFSTL 309 Query: 299 TQEHVWP--RLNKADLIATARKTWDER-RGGRGVRLVGLHVTLL 339 T+ + + + A + ++E RGVRL+G+ +T Sbjct: 310 TKRKSIAQKTQDASQISQIALQLYEELSEKERGVRLLGITMTGF 353 >UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKI6_9BACT Length = 361 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 224/355 (63%), Gaps = 15/355 (4%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 KIIH+DMDCF+AA+E+RD+P LR P+A+GG RRGV++T NY AR FG+ SAMPT A Sbjct: 13 KIIHIDMDCFYAAIEVRDHPELRGEPVAVGGRSSRRGVLTTCNYEARAFGIHSAMPTYQA 72 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 ++ CPHL + P RF+ YK S IR IF+ YTS IEPLSLDEAYLDV+ A+ I Sbjct: 73 MQRCPHLIIKPVRFEVYKNESRRIRAIFADYTSAIEPLSLDEAYLDVSHLDR---PASAI 129 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A EIR+ I L ASAG+AP K LAKIASD KPNGQ+ ITP ++ F++ LP++KI Sbjct: 130 ALEIRKRIRQTTGLNASAGIAPNKMLAKIASDWRKPNGQYEITPDQIADFMRELPVSKIW 189 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVGK SAA+L ++ + TCGD+Q+ + L K FGKFG L+E S+GID RDV S R+RKS Sbjct: 190 GVGKKSAARLASLDIATCGDLQQKTRLELQKHFGKFGSELYELSRGIDHRDVVSNRIRKS 249 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 + ERT A D+H + + ++ EL LA+ K D I + VK K+ DF +T+ E Sbjct: 250 MSCERTYATDLHSLDDRQQHAADIFQELSADLARFKSDRPIHKLFVKCKYSDFTRTSIER 309 Query: 303 V-WPRLNKADLIATARKTWDE--RRGGRGVRLVGLHVTLLDPQME----RQLVLG 350 P +A+ + E R +RL+GL V DP+ + QL Sbjct: 310 SGLPFT-----LASFQDLLAESYHRRSDPIRLLGLGVRFTDPETQTRSPNQLEFD 359 >UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=DPO4_DEHSB Length = 390 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 118/354 (33%), Positives = 179/354 (50%), Gaps = 7/354 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +R+++HVD+D FF +VE P +D P+ +GG ERRGV++ A+Y ARKFG+ S MP Sbjct: 3 IRRVMHVDLDAFFVSVEQAVRPEFKDKPVIVGGKPERRGVVAAASYEARKFGIHSGMPLI 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP + G Y+E S I S ++ +EP+ LDEAYL+VT HGS Sbjct: 63 TAKHLCPQAIFIEGNHQLYREYSEKFMLILSDFSPFLEPMGLDEAYLEVTGFESLHGSIA 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A +IR+ I EL + AS G+A K AKIA++ KPNGQ + E +FL L +A Sbjct: 123 QMASKIRRRITAELGINASIGIANSKVAAKIATEQAKPNGQCEVPAGEEASFLAPLDIAV 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PG+GK + L+++G+ T G + L G + L + GID R V Sbjct: 183 MPGIGKKTEQHLKSLGIDTLGKLAALPASFLKSCLGTYAPYLSNAAMGIDNRPVEMPSEA 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ E T D + + EA + L ++ L K +K++F DF T+ Sbjct: 243 KSISRETTFETDTRNQTFLEAKLSYLSEKITATLRKRGKQ--TRVVQIKIRFADFTTLTR 300 Query: 301 EHVW--PRLNKADLIATARKTWDERRGG--RGVRLVGLHVTLLDPQMERQLVLG 350 + P ++ TA + + VRL+G+ ++ E+QL + Sbjct: 301 QKHLGQPASGNREIFQTALSLMNGILDSDRQAVRLLGVGISDFC-GPEKQLEID 353 >UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM9_9FIRM Length = 409 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 5/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D++ FFA+ E+ +P+L P+ + G +R V+STA+Y AR+FGV SAMP Sbjct: 15 RVIYHIDLNAFFASAEILLDPSLEGKPVVVSGL-TKRSVVSTASYEARQFGVHSAMPINE 73 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP L ++ G Y++ S +YT R+E S+DE Y D++ ++H Sbjct: 74 ALKLCPQLVVVKGHHGYYEQLSEQFISYVKKYTDRVEQASIDECYADMSQAIHRFPRPLD 133 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A +++Q + +L L S GVAP KFLAK+ASDM KP G V+ EVP L LP+ + Sbjct: 134 LAWQLQQELLTDLHLKCSIGVAPNKFLAKMASDMKKPMGITVLRKQEVPVKLWPLPIEDM 193 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+GK +A +++A+G++T GD+ D L GK +R+ G D+R++ S+ K Sbjct: 194 RGIGKKTAPQMKALGIKTIGDLAAADPEQLRPLLGKNTMTYIQRANGEDDREIISDAEIK 253 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ T+ D E + +L +L R+ ++ D + + +++ DF + Sbjct: 254 SMSQSTTLNYDFSTEEEVRTLFRKLANKLSERM--IEEDKMGTIVSISIRYFDFNTNVRS 311 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P DL A + +DE + +R +G+ V L ++++ + L Sbjct: 312 RKLDHPVYRSEDLFELAMELFDENYEDQPMRHLGIGVGSLSSIHDQKIQMNL 363 >UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_LEPIC Length = 364 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 147/361 (40%), Positives = 207/361 (57%), Gaps = 13/361 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMD F+A+VE RD P + P+ +GG R V+S A+Y ARKFGVRSAMP Sbjct: 6 RKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVSAASYEARKFGVRSAMPCSK 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +L P + RF+ YKE S IREIF YT +E LSLDE YLDVT + A Sbjct: 66 AAQLAPQAIFVFPRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYLDVTFNKKNIPFAVT 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR IF +LTASAGV KF++K+AS+ NKPNG V+ P +V +F+ LP++ Sbjct: 126 IAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLPDDVISFIDPLPVSSF 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A K++ +G+ T D++ + L++ FGK G ++ S+G DER V S R RK Sbjct: 186 HGVGKVTARKMKELGIYTGKDLRTKSIDELVQHFGKMGIYYYKISRGEDERMVQSSRERK 245 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T D + + ++ + +ERRL K D +K+KF DF T+ Sbjct: 246 SLGAESTFDRDKLDYDDLLKQLKDVAVVVERRLE--KKDFAGKTLTLKIKFYDFSLKTRS 303 Query: 302 HVW--PRLNKADLIATARKTWDERRG--------GRGVRLVGLHVTLLDPQMER-QLVLG 350 P +L +TA + ++E + +RL+G+ ++ + + E L L Sbjct: 304 KTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIKAIRLLGISLSHPNSENEDPNLFLN 363 Query: 351 L 351 L Sbjct: 364 L 364 >UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKS4_METHJ Length = 368 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 116/353 (32%), Positives = 175/353 (49%), Gaps = 8/353 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMPT 59 I+H+DMD F+A+VE+R+NP L P+ IG RGV+ST +Y AR FG+ SAMP Sbjct: 17 IILHLDMDSFYASVEIRNNPDLSGKPVVIGADPMQGTGRGVVSTCSYEARAFGIHSAMPI 76 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A LCPH +P Y + S I +I IE +S+DEAYLD++ + A Sbjct: 77 SQAYHLCPHAIFIPPHMATYAQVSATIMQILRGIAGEIEQVSIDEAYLDLS-CDRSYELA 135 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A I+Q I N++ LT S G+AP + AK+AS+ KP+G V++P + +FL+ LP+ Sbjct: 136 AHHAANIKQVIRNQVGLTCSVGLAPSRIYAKMASEQQKPDGLTVVSPDTLESFLKPLPVG 195 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 KIPG+GK SA L GL+T GD+ +CD+ L FG L + ++G D + Sbjct: 196 KIPGIGKKSAQVLINAGLQTIGDIARCDIQTLQDMFGSHAVRLHQIARGQDREGLRESGK 255 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 R+S+ E T D E + + L L + ++ G+++++ F T Sbjct: 256 RRSISREHTFLRDSTSPDEILGSLHTMILSLCHELEE--QNIYSRTIGIRIRYTGFITRT 313 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 + P + + E VRL+G+ + L Q L Sbjct: 314 KSVTLMQPTREVRVIECAIDGLFTEMWDRSPVRLIGVRFSGLIHPDPVQRSLS 366 >UniRef50_B0TZS5 DNA polymerase IV n=14 Tax=Francisella RepID=DPO4_FRAP2 Length = 350 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 169/348 (48%), Positives = 222/348 (63%), Gaps = 4/348 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD FFA VE + NP+L+D P A+GG+ +RGVIST NY AR++GVRSAMPT + Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++ CP+L LL F YK S IR+IF +T ++EPLSLDEAYLDVTD SATL Sbjct: 65 AMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYLDVTDVKEYKNSATL 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I+Q IFN+ LT SAGVAP K LAKIASD+NKPNG +VITP +V +F++ LP+ K+ Sbjct: 125 IAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVDSFVKDLPVKKL 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKVS KL+ M + TC D+Q+ L L+ +FGKFG L+ ++GID R+VN R+RK Sbjct: 185 FGVGKVSQEKLKNMNVETCLDLQQLSLATLVDKFGKFGSSLYNYARGIDNREVNPVRIRK 244 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV VE T ED+ C + LY +L R+ + I VK F +T+ Sbjct: 245 SVSVENTYLEDLKTLEACLEKLPNLYNKLTSRMTEEHYK-SIIGIVVKFTDTKFNKTSLT 303 Query: 302 HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 V L+K L + + +RL+G+ + L +RQL L Sbjct: 304 RVAKTLDKKVLKNLIIELHQK--QNYHIRLIGIGI-KLGEIDDRQLSL 348 >UniRef50_A4BJD8 DNA polymerase IV n=1 Tax=Reinekea blandensis MED297 RepID=A4BJD8_9GAMM Length = 365 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 172/350 (49%), Positives = 218/350 (62%), Gaps = 9/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DC++AA+EMRD P LR P+A+GG + R V+ST NY AR +G+ SAMP+ Sbjct: 3 RKIIHIDCDCYYAALEMRDFPELRGRPVAVGG-QGPRSVLSTCNYEARHYGLHSAMPSRR 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL LCP L + P RFD Y+ S IR+IFSRYT RIEPLSLDEA+LDVTDS GSA++ Sbjct: 62 ALSLCPGLIIQPHRFDVYRAVSEQIRQIFSRYTDRIEPLSLDEAFLDVTDSTWFGGSASM 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A+ IRQ I E +T SAG+AP KFLAK+AS+ KPNG + I+P V FL +LPL KI Sbjct: 122 LAEHIRQEIVQETGITVSAGIAPNKFLAKVASEWRKPNGLYSISPEAVDEFLSSLPLKKI 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG + KL GL TCGDV + L L + FGK G L++R++GID R V RK Sbjct: 182 NGVGSKFSQKLAEHGLHTCGDVLRWSLPRLTQYFGKSGLWLYQRARGIDHRPVGVRSDRK 241 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ VE T D+ S C + L L RRL K L I VK++F+DF TT E Sbjct: 242 SLSVEHTFDTDLAGESACLTQLTPLLDTLNRRL-AAKDPLPIKGVFVKVRFNDFSTTTME 300 Query: 302 HVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P R + L+ A + + RGVRL+GL V + Q + QL L Sbjct: 301 RGLPCLRASYEQLLKAACQ-----KSHRGVRLLGLGVRFEEKQSKDQLEL 345 >UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GJQ9_KOCRD Length = 412 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 131/352 (37%), Positives = 180/352 (51%), Gaps = 8/352 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+ VE+ D P R P+ + GS R V+ +A+Y AR+FGV SAMP A Sbjct: 17 ILHVDMDMFYVGVELLDAPQHRGRPVIVAGS-GPRSVVLSASYEARRFGVHSAMPVSQAR 75 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 CP LL +AY S + +IF T R+E LS+DEA++DV+ ++ G IA Sbjct: 76 ARCPSAVLLEPHREAYAHYSRIVMDIFRSVTDRVEQLSVDEAFVDVSGAIRRCGPPVEIA 135 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + +R+TI LTAS GVA K +AKIAS KP+G V+ P AFL LP+ ++ G Sbjct: 136 RGLRRTIQQRTGLTASVGVAENKTVAKIASAHCKPDGLLVVAPEHTRAFLARLPVDRLWG 195 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRKS 242 VG+ ++ L A GL T GD+ L L G G L + + G D R V R KS Sbjct: 196 VGRRTSETLRAAGLATVGDIAGTPLPRLHALVGVASGSHLQQLALGHDPRPVTPTREEKS 255 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G ERT D+ +E + ++ L E RL + L R G+KL++ DF ++ Sbjct: 256 LGAERTFQTDLSETAELKRVLLGLCHETAARLR--RHGLRAGRVGLKLRYADFTTISRSR 313 Query: 303 VW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLD-PQMERQLVLG 350 P + DL A D R + VRLVG+ L QL L Sbjct: 314 TLGHPVTSAHDLYTEAAGLLDALGRRPQAVRLVGIRAEKLVGADHALQLSLD 365 >UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJE1_DESAH Length = 384 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 125/349 (35%), Positives = 188/349 (53%), Gaps = 6/349 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFAA+E RD+P P+ +GG +R V++TA+Y AR+FG+ SAMP MAL Sbjct: 2 ILHMDMDAFFAAIEQRDHPETAGRPLVVGG-NSKRSVVATASYEARRFGIHSAMPMFMAL 60 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 C HL ++P Y S I + + +T +E +S+DEA+LD+T GS I Sbjct: 61 DKCSHLIVIPPDKSKYAAVSGQIMTLLNEFTPLVEQVSIDEAFLDITGCERLFGSVEKIC 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 I+ I E LT S G + +KFLAKIASDMNKP+G +I + P +QTL + K+PG Sbjct: 121 VAIKDRIKQETGLTCSIGASHLKFLAKIASDMNKPDGIHIIKRTDTPEVIQTLAIKKVPG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG+ + +++ +G+ T GD+ + +L K+FGKF L S+GID + + KS+ Sbjct: 181 VGERAMDQMKQLGIITLGDISRIPHPILEKKFGKFATDLLNFSRGIDPSIIGTSGPIKSI 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 E T+ D + + + R+L +LL +KLKF DF Q T++ Sbjct: 241 SSESTLENDTLDMVVMKKHLLAHAQRVGRQLRA--KNLLATNITIKLKFSDFTQITRQTK 298 Query: 304 W--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLL-DPQMERQLVL 349 P + A +++ R +RL+G+ V+ P QL L Sbjct: 299 LMVPICASTAIYREACTLFEQTAKTRKIRLLGVGVSSFSTPDAPVQLEL 347 >UniRef50_A0YE03 DNA polymerase IV n=2 Tax=Gammaproteobacteria RepID=A0YE03_9GAMM Length = 388 Score = 390 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 166/355 (46%), Positives = 222/355 (62%), Gaps = 7/355 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH D DCFF AVEMRD+P+L P+A+GGS +RRGVIST NY AR +GV SAM T Sbjct: 29 RKIIHCDADCFFVAVEMRDDPSLFGRPVAVGGSADRRGVISTCNYEARAYGVGSAMATAT 88 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP L +L G + YK A++ +R IF Y++ +EPLSLDEAY+DVT S CHGSATL Sbjct: 89 ARRLCPDLIVLSGNMEKYKLAASQMRTIFCEYSTLVEPLSLDEAYIDVTGSDACHGSATL 148 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIRQ + + +T SAGVAP KFLAKI SD NKPNG VI PA V AF+Q +P+ ++ Sbjct: 149 IAEEIRQRVKESVGITLSAGVAPNKFLAKIGSDWNKPNGLCVIPPARVDAFVQAMPVDRL 208 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+A +L MG++TCGD++ + L +RFG FG L++ S+GID+R V + R+RK Sbjct: 209 FGVGKVTAERLHRMGIQTCGDLRAFSIFQLSERFGSFGSRLYDLSRGIDDRAVKTGRIRK 268 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKV--KPDLLIARQ---GVKLKFDDFQ 296 S+ VE T D+ C + L+ +L RL + + R +K+KF++FQ Sbjct: 269 SLSVEHTFPSDLSAIDSCLEQLPDLFDQLTTRLQTLNDQSKGAAYRVNKQFIKIKFNNFQ 328 Query: 297 QTTQEHVWPRLNKADLIATARKTWDERRGGRGVRL--VGLHVTLLDPQMERQLVL 349 TT E + + + + R G VRL +G+ QL L Sbjct: 329 STTMECIVAGAPRIAIFRELCRESILRGDGLAVRLMGLGVRFQDPACDGAVQLSL 383 >UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECH9_9ACTN Length = 417 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 118/350 (33%), Positives = 183/350 (52%), Gaps = 9/350 (2%) Query: 6 HVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKL 65 +D+D FFA+VEM D+P R P+ +GG + RGV+ST +Y AR+FGV SAMP+ A +L Sbjct: 28 LMDLDAFFASVEMLDHPEWRGKPLIVGGDADSRGVVSTCSYEARRFGVHSAMPSAEARRL 87 Query: 66 CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQE 125 CP G FD Y+E S + I + T R+E +S+DEA++D+T +A+ Sbjct: 88 CPQAIWTHGHFDRYREVSAQVMAILADETPRVERVSIDEAFIDITPGRFAPEDPLQVARR 147 Query: 126 IRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVG 185 I + L +T S GV K +AKIAS+ +KP G ++ P FL LP++ + G+G Sbjct: 148 ISDRV-AALGVTCSIGVGCNKTVAKIASERDKPFGLTIVRPGTEQRFLAALPVSAMSGIG 206 Query: 186 KVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSERLRKS 242 + + +L M + T G++ + L FG G + +R+ G++ +V + ER KS Sbjct: 207 RSAEERLRRMRIYTLGELSRAPESTLASIFGVNGERMRQRALGLEISEVTSLDEEREVKS 266 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD--DFQQTTQ 300 V ERT A+D+ + EA I L + RRL + L A +KLK+ + + Sbjct: 267 VSNERTFAKDLTERGDIEAAIALLGESVGRRLR--RQGLTGATVTLKLKYSYGSGRTAQR 324 Query: 301 EHVWPRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQMERQLVL 349 P ++ +A A + D+ G VRL G+ ++ D Q Q L Sbjct: 325 RLPHPTDDENIFVAVALELLDKIWQKGMHVRLAGVGMSDFDHQGGIQTDL 374 >UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomycetales RepID=C6WDG0_ACTMD Length = 430 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 128/351 (36%), Positives = 181/351 (51%), Gaps = 8/351 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +HVDMD F+A+VE+RD P L +P+ +GG RGV+++ANY AR+FGVRSAMPT A + Sbjct: 31 LHVDMDAFYASVEIRDRPELARLPVVVGG-TAHRGVVASANYLAREFGVRSAMPTAHARR 89 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH-CHGSATLIA 123 L PH LP F Y++ S + E+F + T +EPLSLDEA+LDV ++ + IA Sbjct: 90 LAPHAVFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFLDVGGALRRLRATPAEIA 149 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 +R + E +T S GVA KFLAK++S M KP+G V+ FL LP+ + G Sbjct: 150 ARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPDGLMVVPKDRALEFLHPLPVGALWG 209 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 VGK +A +L+ +GL T GDV L+ L K G L+ ++G D+R V KS Sbjct: 210 VGKRTAEQLDRLGLETVGDVAAAPLLRLRKAVGVALAEHLYALARGHDDRPVVPYTREKS 269 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G E T D + + + RL L L +K++F DF T+ Sbjct: 270 IGAEETFEVDHFDRAVLKLELLRLSERTAASLRA--KGLRGRTVSIKVRFADFTTITRSK 327 Query: 303 VW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP-QMERQLVLG 350 ++ ATA D+ VRL+G+ V L QL Sbjct: 328 TLRVATDVAREVYATATSLLDDHVPPGAVRLIGVRVEQLSEGAAGEQLAFD 378 >UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales RepID=Q2IM85_ANADE Length = 418 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 135/352 (38%), Positives = 185/352 (52%), Gaps = 7/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+D+D F+A+VE D+P LR P+ +GG RGV+ A+Y AR+FGVRSA+PT Sbjct: 11 RTILHLDLDAFYASVEQLDHPELRGRPVIVGG-TGNRGVVCAASYEARRFGVRSALPTAR 69 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LP RF Y E S + +++ RYT +EPLSLDEA+LDVT S HG Sbjct: 70 ARRLCPDGVFLPPRFGRYSELSRRVFDVYRRYTPLVEPLSLDEAFLDVTASRALHGGGPD 129 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I+ + E L SAGVA VK AKIA+D+ KP+G V+ P V AFL LP+ ++ Sbjct: 130 IARAIKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDGLVVVPPGGVAAFLAPLPVGRL 189 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLR 240 GVG+V+ A L +G+ T GD+ + L G R L + G D R+V + Sbjct: 190 WGVGEVTEAALRRIGVATIGDLARMPESALAAALGPTHARGLRALACGEDPREVVPDEEA 249 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSVG E T +D+ E + + RRL L +K+K+ DF T+ Sbjct: 250 KSVGAEDTFDQDLLGRPALERELLAQAGTVARRLRAA--GLAGHVVTLKVKYADFTLVTR 307 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER-QLVL 349 + + A R VRL G+ V+ ER QL L Sbjct: 308 RVTLERATDDDRAIFDAACAQLARVDLRRPVRLTGISVSGFAGDEERGQLGL 359 >UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQX0_9ACTO Length = 445 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 132/351 (37%), Positives = 186/351 (52%), Gaps = 9/351 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FF +VE+ D P L P+A+GG+ RGV+S A+Y AR+FGV SAMP AL Sbjct: 23 ILHVDMDAFFVSVELLDRPELAGKPVAVGGA--ERGVVSAASYEAREFGVNSAMPVARAL 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 + CPHLT++P R Y E S I +I T +E LS+DEA+LDV + G IA Sbjct: 81 RACPHLTMIPPRPGRYSEVSRQIMDILHDVTPLVEKLSVDEAFLDVGGARRLMGGPVRIA 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 ++R I E+ + AS G+A K +AKIAS KP+G +I + AFL LP+ + G Sbjct: 141 TDLRARIRREVGVPASVGIAATKHVAKIASAHAKPDGLLLIPRSATIAFLHGLPVGALWG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRKS 242 VG+ + A+L G+ T G++ L + G+ G L+ + G D R V + R KS Sbjct: 201 VGEKTRARLANQGIETVGELADAGPERLARILGRAHGTHLYRLAMGQDPRPVQTSREEKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G E T E + + E I+ RRL + L +K++F DF T+ Sbjct: 261 IGKEETFFEHVADRGKLERILLAQAHATARRLR--RAHLTARTVAIKVRFADFTTITRST 318 Query: 303 VW--PRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQ-MERQLVL 349 + P ADL A A+ +D G G+RL+GL + Q QL L Sbjct: 319 TFARPTDLAADLYAGAKHLFDSVAVSGEGLRLLGLRAEQIVDQREGVQLAL 369 >UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ51_9FIRM Length = 395 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 191/354 (53%), Gaps = 9/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R HVD++ FFA+ E+ +P+L+ PI + G + +R V+STA+Y AR +G+ SAM + Sbjct: 3 RIYFHVDLNAFFASAEILRDPSLKGKPIVVSG-QTKRSVVSTASYEARAYGIHSAMSIIL 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP L ++ G + Y+ S+ I ++ +E S+DE Y+DVTD + + Sbjct: 62 AKKLCPDLEIIEGHYSYYRSLSDEFMTIVRSFSPYMEKASIDECYVDVTDVIQQYKHPLD 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A +++ I+ + L S G+ P FLAK+ASDM KP G V+ +V A L LP+ K+ Sbjct: 122 LAVLLQKAIYQKTGLGCSIGIGPNLFLAKMASDMKKPMGITVLRIRDVEAKLWPLPVHKM 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKC-DLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+G+ + K+EA+G++T GD+ + L K F L E+ +GID + + R Sbjct: 182 RGIGRKTLPKVEALGIKTIGDLANYQPIQDLGKIFKNSTDSLLEKCRGIDRTPLELDWQR 241 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+GV T+ EDI + E ++ L +L +L K K +++ + +F+ ++ Sbjct: 242 KSLGVSETLLEDISDYEELRGLLRSLSKKLHHQLEKEKRIGRA--ISIRITYYNFRNVSR 299 Query: 301 EHVWPR--LNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQME--RQLVL 349 + + D+ A + +D+ VRL+G+ +T + + +QL L Sbjct: 300 SLSVKQGIYLEPDIFDLALQLFDQYWEYDEPVRLLGITITDFMDEHQAIQQLNL 353 >UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GF38_9DELT Length = 409 Score = 385 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 128/349 (36%), Positives = 185/349 (53%), Gaps = 11/349 (3%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD FFA++E RD+P LR P+ +G + +RGV++ A+Y AR+FG SA P +A + CP Sbjct: 1 MDAFFASIEQRDDPRLRGKPVLVGHA-GKRGVVAAASYEARRFGCHSAQPMAVARRRCPQ 59 Query: 69 LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQ 128 ++PGR + Y S + EI +T +E LS+DEA+LD++ + HG + A+ IRQ Sbjct: 60 AVIVPGRHEVYLGVSAELFEILEGFTPVVEGLSIDEAFLDMSGTQRLHGPPRVAAERIRQ 119 Query: 129 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVS 188 T+ L+LT S G+A KF+AKIASD +KP+G V+ P AFL LP+ ++ GVG + Sbjct: 120 TVAERLRLTCSVGIASAKFIAKIASDQDKPDGLTVVEPGRERAFLHRLPVRELWGVGPRT 179 Query: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERT 248 LE G+RT GD+ + L L + G+ GR L + S G+D R V+ R RK V E T Sbjct: 180 QEVLERYGVRTIGDIAELGLETLERDLGEHGRHLHQLSVGVDPRPVSPGRERKQVSHENT 239 Query: 249 MAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW--PR 306 ED+ E E + R + RL V L + +KL+ F T++ P Sbjct: 240 FGEDLRSRPEIEDWLLRQSTRVADRL--VAKGLHGRKVHLKLRDASFTTWTRQCSLDEPT 297 Query: 307 LNKADLIATARKTWDERRGGR-----GVRLVGLHVTLL-DPQMERQLVL 349 + A AR D +RL G+ V+ RQL L Sbjct: 298 QEARVIFARARALLDRLEAEGKLRALRIRLTGVGVSDFRRDAPARQLEL 346 >UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA62_9FIRM Length = 413 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 109/359 (30%), Positives = 176/359 (49%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNP-------ALRDIPIAIGGSRERR-GVISTANYPARKFGV 53 R I H+D++ F + + N LR IP A+GG +R GV+ + A+K+GV Sbjct: 7 RIIFHIDVNSAFLSWQAAYNKKMGNKEVDLRSIPSAVGGDEAKRKGVVLAKSQKAKKYGV 66 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 R+ A K CP+L ++ F Y+ SN + ++ S Y+ IE S+DE +LD T S Sbjct: 67 RTGESLFEARKKCPNLLIVKPNFKIYRMYSNKLFDLLSEYSDTIERYSIDECFLDYTSSQ 126 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 G A EI++ I EL T + G++ K LAK+A D+ KP+ + P E+ + Sbjct: 127 KLFGEPIKAAYEIKERIKRELGFTVNIGISNNKLLAKMAGDLKKPDKVITLFPEEIEEKM 186 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDER 232 L + ++ VG+ + KL ++G++T GD+ KC + L+ F K G +L+ S GIDE Sbjct: 187 LPLTINELFMVGRKTKEKLNSLGIKTIGDLNKCSMGFLISNFKKAQGTMLYNYSHGIDES 246 Query: 233 DVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 +V R KS+G T+ D +E + + L + RL + DL V +K Sbjct: 247 EVEISRQTKSIGNSTTLKNDTTDINEVKKVFLALSDSVGTRLR--RKDLKGNTITVTIKN 304 Query: 293 DDFQQTTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + F + + P + + A K ++E +RL+G+ V L+ QL L Sbjct: 305 NLFHSYSHQRTLPYFTNSTNTIYEQAFKLFNEFWNNDAIRLLGISVGGLNKDEVNQLSL 363 >UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_PELTS Length = 402 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 107/357 (29%), Positives = 175/357 (49%), Gaps = 11/357 (3%) Query: 1 MRK-IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMP 58 MR I+ DM+ F+A+V P L+ P+ +GG RR G++ A+ A+ GV++ M Sbjct: 1 MRCPILLADMNSFYASVHQAMEPRLKGKPVIVGGDPARRHGIVLAASVEAKACGVKTGMT 60 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A LCP L R Y S I I ++ +EP S+DEA++DV+ GS Sbjct: 61 VREAAALCPQGIFLKPRHSHYINFSARIIRIMKDFSPLVEPFSIDEAFMDVSGCGLLFGS 120 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 + IA +++ I NE+ + S GV P K LAK+A+ M KP+G ++ +VP + LP+ Sbjct: 121 SLEIAVKLKARIKNEVGVLCSVGVGPNKLLAKMAAGMQKPDGLTLLDFPDVPVKIWPLPV 180 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS-- 236 ++ GVG +L + + T GD+ + L +L ++FG G IL + GID V+ Sbjct: 181 RELFGVGSRLEKRLRDLNIHTIGDLARYPLQVLKQKFGLVGHILHLSASGIDYSPVDPCS 240 Query: 237 -ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 ER+R S+G + T+ D ++E + +I L + RR+ + LK DF Sbjct: 241 LERVR-SIGHQITLPRDYWGYNEIKVVILELCEIVCRRVRL--GGYAGRTVSLTLKDTDF 297 Query: 296 QQTTQEHVW--PRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQLVL 349 ++ P + ++ A + + + VR+VG+ + L QL L Sbjct: 298 LWLSRARTMNYPTASADEVYRVAVQLLHQHWPPWKPVRMVGVSLAGLVKNRAEQLDL 354 >UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class) RepID=C1A1E2_RHOE4 Length = 432 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 183/354 (51%), Gaps = 13/354 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+H D+D F+A+VE RD+P L P+ +GG GV+ A+Y A+ FGVR+AM G A Sbjct: 37 TILHADLDSFYASVEQRDDPTLAGRPVIVGG-----GVVLAASYEAKAFGVRTAMSGGQA 91 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 LCP ++P R AY +AS + ++F + +E +S+DEA+L+V G+ I Sbjct: 92 RSLCPQAIVVPPRMSAYSQASKDVFDVFHDTSPLVEGISIDEAFLEVGGLAKIVGNPLQI 151 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 +R+ + ++ L + G+A KFLAK+AS KP+G + P FL LP+ K+ Sbjct: 152 GANLRRDVAEQVGLPITVGIARTKFLAKVASAFAKPDGLLRVPPEGETEFLHPLPVEKLW 211 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNSERLRK 241 GVGK++A KL + T GD+ + D ++ G GR L+ S D R V + R R Sbjct: 212 GVGKITAHKLRNFDIVTVGDIARHDESSIVSILGGGAGRHLYALSHNRDPRPVRAYRGRS 271 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G + + H +E +A + L + RR+ + ++L+F DF + T+ Sbjct: 272 SMGAQHALGRGSHSRAELDASLMSLVDRVSRRMRSAQR--TGRTVTLRLRFADFTRATRS 329 Query: 302 HVW--PRLNKADLIATARKTWDE---RRGGRGVRLVGLHVTLLDPQMERQLVLG 350 H + A+L+ + DE +G+ L+G+ V+ LD QL L Sbjct: 330 HTLRRSTADTAELLNASMVLLDEAVPMIADKGITLIGVAVSNLDRDGAEQLELP 383 >UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex degensii KC4 RepID=C9RDA6_AMMDK Length = 385 Score = 383 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 125/350 (35%), Positives = 180/350 (51%), Gaps = 11/350 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M++I+ D+D FFAAVE RD+P LR P+ +GGS RGV++T +Y AR FGVRSAMP Sbjct: 1 MQEILLCDLDAFFAAVEQRDHPELRGKPVIVGGSLTGRGVVATCSYEARSFGVRSAMPLK 60 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 AL+LCP LLP Y+E + + I+ R+T IE +S+DEAYL V G Sbjct: 61 KALRLCPQAILLPVNISRYREVAAEVLAIYRRFTPFIEVVSIDEAYLGVPS-----GEGL 115 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+ I++ + EL L S GV+ K LAK+A D+ KP G + P EVP L LP+ Sbjct: 116 AVARAIKEAVRKELDLPLSIGVSVNKLLAKVACDLAKPQGLKALWPEEVPQVLWPLPVGV 175 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 +PG+G + +L+A G++T GD+ L +L G E S G+D R + R Sbjct: 176 LPGIGPKTERQLQAKGIKTVGDLAAAPLYLLKMLLGSEALRFKEYSHGVDRRGLVLSRPP 235 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 S E T +D+ + RL +L RL + L +KL+F DF+ T+ Sbjct: 236 LSFSKETTFPQDVQEPEVVRGALMRLAEDLGYRLR--QNGYLARSVTLKLRFADFRTVTR 293 Query: 301 EHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLV 348 + + TA + + + RLVG+ V L +QL Sbjct: 294 TRCLAEGTNRDSLIYRTAWELFQKFASSPPWRLVGIKVAELS--NWKQLS 341 >UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=DPO4_CLOK5 Length = 400 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 110/354 (31%), Positives = 178/354 (50%), Gaps = 8/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R I VDM+ FF + E +P + P A+ G + R G+I TANY ARKFGV++ M Sbjct: 3 RVIFLVDMNAFFISCESTRHPEIIGKPAAVAGDPKNRSGIILTANYEARKFGVKTTMVLH 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 LKLCP++ ++P YK+ S + I S+YT IE S+DEA+LD+T G + Sbjct: 63 KVLKLCPNIIIIPPDHCFYKQKSKEVMGILSKYTPVIEKNSIDEAWLDMTGCERIFGRSY 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 A+ I + I +EL L S G++ KFLAK+AS M KP G + ++ L LP+ Sbjct: 123 QTAECIMKHINSELGLDCSIGISENKFLAKMASQMKKPLGITKLWKKDIELKLWPLPVEF 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + G+GK +A KL M ++T G++ D L+K+ GK G + + + GID V + Sbjct: 183 MNGIGKQTARKLREMKIKTIGELANFDRRYLIKKLGKVGAEIHQFANGIDVSPVTPHSHK 242 Query: 241 --KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+G T+A DI + I+ L ++ K + +K+ +FQ Sbjct: 243 DVKSIGKSITLAHDISDIESAKVILMELSDKVGMTARKYNKKG--HTVQINIKYSNFQSI 300 Query: 299 TQEHVW-PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDP-QMERQLVL 349 T++ ++ + + ++ R VRL+G+ ++ + Q+ + Sbjct: 301 TRQRTITETYLVKEIYSAGIEMLEKNWNERLPVRLLGISLSGFSKYNEDEQISM 354 >UniRef50_Q3II35 DNA polymerase IV n=3 Tax=Alteromonadales RepID=DPO4_PSEHT Length = 351 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 175/353 (49%), Positives = 225/353 (63%), Gaps = 4/353 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+K IH+DMDCF+AAVEMRDNP L ++P+AIGG RRGV+STANY AR++GVRSAM Sbjct: 1 MKKFIHIDMDCFYAAVEMRDNPKLANVPLAIGG-NSRRGVLSTANYIAREYGVRSAMSNY 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L ++PGR YK+ S IR +FSRYT IEPLSLDEAYLDVT S C GSAT Sbjct: 60 HAKQLCPDLVIVPGRMAVYKDVSTQIRAVFSRYTDLIEPLSLDEAYLDVTHSEQCKGSAT 119 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 LIAQ+IR I+N LTASAG+AP+KF+AKIASD NKPNGQFV+ P +V AFL LPL K Sbjct: 120 LIAQQIRADIYNATGLTASAGIAPIKFIAKIASDENKPNGQFVVLPDQVDAFLAQLPLGK 179 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 IPGVGKV+ KL GL T DV+K + + + G FG L+++ G V++ER+R Sbjct: 180 IPGVGKVTLEKLNLKGLYTGQDVRKKGVNWMQQHVGNFGVSLYQKCAGEHIGRVSTERVR 239 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ VE T + + EC + L EL RL K + + + VK+KF +F T Sbjct: 240 KSLSVEHTYEYNKNSLQECLEQLPSLLEELTTRLNKQQLQNQVNKLSVKVKFANF-VVTS 298 Query: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVT-LLDPQMERQLV-LGL 351 + +D+ + +R + VRL+G+ V PQ QL L + Sbjct: 299 ADQAHQQLNSDIFSELLAKAYQRGLQQPVRLLGIGVGIKNQPQHNLQLSILDM 351 >UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Rothia mucilaginosa RepID=D2NU69_9MICC Length = 479 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 125/358 (34%), Positives = 180/358 (50%), Gaps = 14/358 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H+DMD FF VE+ +NPALR PI + R V+ +A+Y AR GVRS MP Sbjct: 26 RVIMHLDMDAFFVNVELLENPALRGEPIIVAPL-GPRSVVCSASYEARAHGVRSGMPLSR 84 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A L P+ T+LP R D Y+ S + I + + +E +S+DEA++D+T + Sbjct: 85 ARNLSPNATVLPLRGD-YRHYSRAVMAILNDLSPYVEQVSVDEAFVDLTGAYLHGQDPVA 143 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +AQ R I EL L +SAGVAP K LAK+AS +KPNG +VI P V FL ++ + Sbjct: 144 LAQSARDRIAQELSLPSSAGVAPNKLLAKMASTGSKPNGLWVIPPERVQEFLDPRKVSNL 203 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVG S +L G+ T ++ L L +RFG G LW ++GIDER V +ER Sbjct: 204 WGVGVKSTEQLSRYGIHTIAQMRSMSLDWLKERFGTAQGEHLWAMARGIDERPVVTEREE 263 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G E T D E A I L +L +RL L +K+++ F+ T+ Sbjct: 264 KSMGGEHTFETDTTDAQEVSAAIRELSLKLGKRLRAAGK--LAGGLSLKIRYSTFETHTR 321 Query: 301 EHVW--PRLNKADLIATARKTWDE------RRGGRGVRLVGLHVTLLDP-QMERQLVL 349 P + + + A + + R +RL+G+ L + Q L Sbjct: 322 AIALNVPVDSGMQIASLALEALRADEILVGQAAPRALRLIGVRAEKLAHAEDGVQQTL 379 >UniRef50_B6J224 DNA polymerase IV n=5 Tax=Coxiella burnetii RepID=B6J224_COXB2 Length = 372 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 164/338 (48%), Positives = 218/338 (64%), Gaps = 5/338 (1%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 +RKIIHVDMDCF+ A+EMRDNP LR+ P+A+GG+ RGVI TANY AR +GV+SA+ + Sbjct: 24 LRKIIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRGVICTANYIARGYGVQSAISSS 83 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A KLCP L +LP + Y+ + IR +F YT +EPLSLDEAYLDV+D GSAT Sbjct: 84 YAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSLDEAYLDVSDCKIHQGSAT 143 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IAQEIR+ I LTASAGVA K LAK+AS NKPNG VI P++ F++TLP+ K Sbjct: 144 RIAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPSKADDFVKTLPIEK 203 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 I GVGK++A K++AM + TC D+Q L K FG FG L+E +GID R V R+R Sbjct: 204 IHGVGKITAQKMKAMNIHTCSDLQALSREALSKSFGSFGVTLYELCRGIDPRSVEPNRIR 263 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KSV VE T ++DI SECE + L+ +L++RL D I +Q VK+KF+DF+ T+ Sbjct: 264 KSVSVEHTFSQDIATLSECEIELANLFNDLKQRL-LKHTDRCIRKQFVKIKFNDFK-ITK 321 Query: 301 EHVWPRLNKADLIATAR-KTWDERRGGRGVRLVGLHVT 337 + DL + ++ + VRL+G+ V+ Sbjct: 322 AETITQTISLDLFKHLLYQIFER--QQKPVRLLGVGVS 357 >UniRef50_A3NBC4 DNA polymerase IV n=15 Tax=pseudomallei group RepID=A3NBC4_BURP6 Length = 403 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 166/350 (47%), Positives = 229/350 (65%), Gaps = 2/350 (0%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH D DCF+A+VEMRD+P+LR P+A+GG ++RGVI+T NY AR++GV SAM + + Sbjct: 19 RKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYDARRYGVHSAMSSAL 78 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A++ CP L +LP D Y+ AS I I+ YT +EPLSLDEAYLDV+ + C GS TL Sbjct: 79 AMRKCPDLLILPPAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCQGSGTL 138 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR+ + + + +T SAGVAP KF+AKIASD NKP+G FV+ P EV AF+ LP+ K+ Sbjct: 139 IAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHEVDAFVAALPVRKL 198 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGKV+AA+L+ +G+RTC ++ L L + FG FGR L E ++GIDER V +++ RK Sbjct: 199 HGVGKVTAARLDKLGIRTCAQLRDWSLFDLHRTFGAFGRRLHELARGIDERPVRADQARK 258 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV VE T +D+ C A I RL L+ R+ + I + VK++F DFQ+TT E Sbjct: 259 SVSVETTYVQDLAALDACAAEIRRLTGLLDARIERAGAARSIRKLYVKIRFADFQRTTVE 318 Query: 302 HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 V + +A K RR + VRL+G+ V + + ER + L Sbjct: 319 CVADATDAETAVALLAKGLARRR--QAVRLLGVGVRIDEDTAERHGQIAL 366 >UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli RepID=Q38YP4_LACSS Length = 376 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 194/358 (54%), Gaps = 10/358 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIG---GSRERRGVISTANYPARKFGVRSAMP 58 RKIIH+DMD F+A++E R+ P LR P+ I +GV++TANY AR++GV SAM Sbjct: 15 RKIIHIDMDAFYASIEEREQPDLRQKPLIIARDPSDTGGKGVVTTANYVARQYGVHSAMS 74 Query: 59 TGMALKLCP--HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 A +L P F Y+ S I +IF T +IEP++ DEAYLDVT++ Sbjct: 75 AQKAAELIPKHQAVFKTPNFPLYQSVSAQIHDIFHTVTDKIEPIAFDEAYLDVTENKLGL 134 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 + +++ I E QL +SAG++ KFLAK+ASD KP G+ ++ P + AFL L Sbjct: 135 THTIEVVAYLQKAILEETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSRL 194 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P+ K GVG+ + K++ +G+ T D+ + L++ FGK G L+ +GID R V Sbjct: 195 PIEKFRGVGQKTVPKMQDLGIMTGADLLAQSEMFLMQHFGKLGYGLYRHVRGIDNRPVEY 254 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 +R RKS+G E T + + + + ++ L EL +RL K + L +K++ ++ Sbjct: 255 QRERKSIGNEHTYGQPLISEEQVQVQLKSLAVELAQRLRKNQKHGL--TVVLKVRNRQYE 312 Query: 297 QTTQEHVWPRL--NKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ N A+L A A + W + G+RL+G+ VT L PQ + L L Sbjct: 313 TITKRKTLGEYVGNAAELEAIANQIWQSIGQAEVGIRLLGITVTNLAPQTFENITLPL 370 >UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTM8_9FIRM Length = 381 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 133/356 (37%), Positives = 191/356 (53%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMP 58 RKI+HVDMD F+A VE RDNPA+ PI I RG++ST NY AR++G+ SAM Sbjct: 25 RKILHVDMDAFYANVEARDNPAIAYKPIVIAKHPKLTGGRGIVSTCNYKAREYGIHSAMT 84 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A K CPH + G + Y+E S IR IF++YT IEP+SLDEAYLDVT + S Sbjct: 85 AAEAFKRCPHAVFIAGDWSHYQEVSQQIRTIFAQYTDLIEPMSLDEAYLDVTHNKLGIQS 144 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 AT +AQ I+ I EL LT S GV+ KFLAKIASD KP G V+TP + FL LP+ Sbjct: 145 ATHLAQRIQAQIKAELNLTCSIGVSYNKFLAKIASDYRKPFGITVVTPDQALEFLDDLPI 204 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 K GVG+ S G+ T D++ +L L++ FGK G+ L+ + +G+ + V R Sbjct: 205 DKFYGVGRQSVPYFHQRGIMTGADLRAIELEDLIEHFGKMGKSLYYKVRGVHDAPVQPHR 264 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 RKS+G E T + + + +L + L + +K+++DDF+ Sbjct: 265 ERKSIGKETTFIQFLAEEEGVLDALTQLTKRVVEILKA--KNFHAQTVTLKIRYDDFETL 322 Query: 299 TQEHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLD--PQMERQLVL 349 T++ P + + ++ W+ + VRL+G+ L ++ QL Sbjct: 323 TRQLSLGSPSQDVEVISQAVQELWELHGHLHKSVRLLGVSTAGLIQLDKVHTQLSF 378 >UniRef50_D1JEL0 DNA polymerase IV n=1 Tax=uncultured archaeon RepID=D1JEL0_9ARCH Length = 363 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 184/362 (50%), Gaps = 17/362 (4%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---------RGVISTANYPARKF 51 +R I+HVDMD FF++VE R+ P L+ +P+ +GG RGV+ST +Y ARK+ Sbjct: 5 VRVILHVDMDSFFSSVEEREKPKLKGLPVIVGGKITPEWEKEDSKIRGVVSTCSYEARKY 64 Query: 52 GVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD 111 G+ SAM A KLCP T LP YK S I I +Y ++E +S+DEA+LDV+ Sbjct: 65 GIHSAMALSKAYKLCPDATFLPVNMPLYKHVSGEIMNILRKYADKMEQVSIDEAFLDVST 124 Query: 112 SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA 171 V A A+ I++ I E LT S G+AP K +AKIASD KP+G V+ E A Sbjct: 125 KVEDWNDAREHAKRIKKAIQVEEGLTCSIGIAPNKTIAKIASDFVKPDGLTVV--EEAKA 182 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDE 231 FL L + IPGVG + L MG+ G + D+ L+ G+ G+ L + GID+ Sbjct: 183 FLAPLDVKNIPGVGPKTDKILRMMGIDQIGQLASGDVQKLVAAIGQSGKRLHLVANGIDK 242 Query: 232 RDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 +V + +RKS+ ERT D S ++ L E+ + + +K+K Sbjct: 243 SEVEEKWVRKSLSRERTFVNDTRDASVLTKCVDALAEEVYNAMTDA--GFVFKTVSIKVK 300 Query: 292 FDDFQQTTQEHVWPRL--NKADLIATARKTWDER--RGGRGVRLVGLHVTLLDPQMERQL 347 F+DF T+ + + L TA + E + RL+G+ ++ L E+Q+ Sbjct: 301 FEDFTIATRAKTLKTYHCDLSTLKRTANELMTELNNAKSKKKRLIGVRISNLGAVDEKQM 360 Query: 348 VL 349 Sbjct: 361 RF 362 >UniRef50_C5BNY2 DNA polymerase IV n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BNY2_TERTT Length = 360 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 170/353 (48%), Positives = 226/353 (64%), Gaps = 7/353 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+D DCFFAA+E+R+NP L D P+A+GG RRGVIST NY AR++GV SAMP+ Sbjct: 6 RKIIHLDADCFFAALEIRENPDLADFPLAVGGDPGRRGVISTCNYLARQYGVHSAMPSAH 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP L + F YK+ S + EIF+R++ +IEPLSLDEA+LDV+D HGSATL Sbjct: 66 AKRLCPELVIRSSNFPLYKQVSAQMFEIFTRFSEKIEPLSLDEAFLDVSDCQQFHGSATL 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+EIR+ + EL +T SAGVAP+KFLAKIASD +KPNG F +TP +V F++ LPL K+ Sbjct: 126 IAREIRRQVETELGITVSAGVAPIKFLAKIASDWSKPNGLFTVTPDKVTEFVKDLPLQKL 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVGKV+ KL GL C D++ L++RFG+FG L S GIDER+V S R RK Sbjct: 186 PGVGKVTREKLAREGLLYCRDLESYSEHELVQRFGRFGANLKRMSVGIDEREVKSSRERK 245 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ +E T A DI E I++L LE R K++ + ++++ VKLKFDDF QTT E Sbjct: 246 SLSIETTFARDISSPGEIADQIDQLVVGLEERYNKLQRKVAVSKKFVKLKFDDFTQTTLE 305 Query: 302 HVWPRL----NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 R + + W R +RL+G+ ++ + Q L Sbjct: 306 SSVSRCGKIFSSQEFERMCYAAWAR--QKRPLRLLGVGLS-FAERSHPQAQLS 355 >UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiales RepID=A9KNH1_CLOPH Length = 400 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 109/360 (30%), Positives = 185/360 (51%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVE----MRDNPA---LRDIPIAIGGSR-ERRGVISTANYPARKFGV 53 R I HVD++ F + E + +P LR IP A+GG + R G++ + A+ FG+ Sbjct: 6 RLIFHVDVNSAFLSWESVHRLAADPESIDLRTIPSAVGGDKQSRHGIVLAKSTQAKSFGI 65 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 + P AL+ CP L ++P F+ Y S + + S YT + S+DEA+LD+TD+ Sbjct: 66 VTGEPLTHALQKCPSLVVVPPNFEVYTRYSERLMNLLSEYTPTLNQFSIDEAFLDMTDTY 125 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 H G+ IA +IR + EL T + G++ K LAK+ASD KPN + P+E+P + Sbjct: 126 HLFGAPMDIANQIRDRVLKELGFTVNIGISTNKLLAKMASDFKKPNLCHSLFPSEIPEKM 185 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ ++ VGK + AK +G+R+ D+ ++ +L G K+ ++ E + GIDE Sbjct: 186 WPLPVEELFFVGKSAKAKFGILGIRSIYDLAHTNVNILKTHLGNKYSALIHEYANGIDEE 245 Query: 233 DVN-SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 V ++ K G T+++D+ + + ++ L + RL ++ + V++K Sbjct: 246 PVEVTDPKAKGCGNSITLSQDVIDNAIAKQVLLALSETVGARLRS--SNVSCSCITVEIK 303 Query: 292 FDDFQQTTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + +FQ T + V P A + A + +DE +RL+G+ T LD Q+ L Sbjct: 304 YTNFQTYTHQTVLPHQTNTTATIYEAACRLFDEFWDNSPIRLLGIRTTKLDDTDFSQISL 363 >UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO42_BACSU Length = 412 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 109/360 (30%), Positives = 174/360 (48%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG-VISTANYPARKFGVRSAMPTG 60 + I VDM F+A+VE +NP L++ P+ + G E+RG V+ A A++ GV +A Sbjct: 5 KVIFLVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLW 64 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP +L R Y + S I I YT +EP S+DE ++D+T S G+ Sbjct: 65 EAQEKCPEAVVLRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTPM 124 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASD-MNK--PNGQFVITPAEVPAFLQTLP 177 IA+ I+ I E+ + A G+ P K LAKIA D K NG F +T + + LP Sbjct: 125 EIAKSIQGRIMREIGVYARVGIGPNKALAKIACDNFAKKNKNGIFTLTKENMKTEMWPLP 184 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + + GVG L MG+ T G + L +L K++G G +LW + GID V++ Sbjct: 185 VGSMFGVGSRMKHHLNRMGISTIGGLAAFPLDLLKKKWGINGHVLWMTANGIDYSPVSTS 244 Query: 238 RL--RKSVGVERTMAEDIHHWS-ECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 L +K++G T+ D H+ E + ++ L E+ RR ++ V + D Sbjct: 245 SLDGQKAIGHGMTLPRDYEHFDKEIKVVLLELSEEVCRR--SRNAGVMGQTVSVSCRGAD 302 Query: 295 FQQTT---QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F T ++ P + D+ R+ + G+ VR +G++++ L QL L Sbjct: 303 FDWPTGFNRQVKLAEPTNSTQDVYEAVRRLFLTFWDGKPVRRLGVNLSQLSSDDIWQLNL 362 >UniRef50_Q2LU75 DNA polymerase IV n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU75_SYNAS Length = 362 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 117/346 (33%), Positives = 183/346 (52%), Gaps = 11/346 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGG--SRERRGVISTANYPARKFGVRSAMPT 59 R+I+H+DMD FFA+VE P L+ P+ IGG +RGV+STANY ARK+G+ SAMP Sbjct: 14 RRILHIDMDAFFASVEENRKPELKGKPVVIGGMGDPSKRGVVSTANYEARKYGISSAMPL 73 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A KLCP LP + AY S + + + T+ +E + +DEAYLD++++ Sbjct: 74 RTAYKLCPRAIFLPVDYKAYLAVSRYFKAVLLNITTIMEDVGIDEAYLDISENRDTD--- 130 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 I+++I+ I+ + LT S G+AP K LAKIASDMNKP+G + + ++ L LP+ Sbjct: 131 EKISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDGLTIFSGEDIENRLWPLPIR 190 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238 K+ G+G + L+A+ + T G + +L+ RFG +G L E S+GIDE + + Sbjct: 191 KLYGIGPKTEEHLKALNIATIGQLAALPPEVLVARFGPSYGHYLHEASRGIDESPIITSW 250 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS E T D +W + L E+ LA+ +K+++ DF+ Sbjct: 251 EPKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAE--KGYAARNVILKIRYSDFRTV 308 Query: 299 TQEHVWPRL--NKADLIATARKTWDER-RGGRGVRLVGLHVTLLDP 341 T+ + + ++ A G+ +RLVG+ V L+ Sbjct: 309 TRACSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVRVGRLEK 354 >UniRef50_C5RD20 DNA-directed DNA polymerase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RD20_WEIPA Length = 372 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 132/357 (36%), Positives = 204/357 (57%), Gaps = 9/357 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMP 58 RKI+H+DMD F+A +EMRDNP + IP+ + RGV++TANY AR GV SAM Sbjct: 16 RKILHIDMDAFYAQIEMRDNPEYKSIPLILANDPRKTGGRGVVATANYLARNLGVHSAMS 75 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 ALKL P + F Y+ S + +IF RYT+++EP++ DEAYLDVT+++ + Sbjct: 76 AAEALKLAPQAVFVTPNFSKYRGVSQQLHQIFKRYTNKVEPVAFDEAYLDVTENIPNINN 135 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A E++Q I+ EL+LT+S G++ KFLAK+AS+ NKP+G +I P ++ +FL TLP+ Sbjct: 136 AIQLAHELQQIIYEELELTSSVGISFNKFLAKLASEHNKPSGLTIINPEDIRSFLDTLPI 195 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 ++ GVG +A K+ ++G+R D+ L FGK G I +ER +G+D+R V +R Sbjct: 196 NEMRGVGAKTAEKMISLGIRNGKDLYDTPQNKLADEFGKSGYIFYERIRGVDDRPVVWQR 255 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 RKS+ ERT + ++ L +L L +K L +K++ ++FQ Sbjct: 256 ERKSMSKERTYGPFLDTEQAIMDELKDLAAKLTASL--IKSQLHGKTLVLKIRDNEFQTA 313 Query: 299 TQEHV---WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVLGL 351 T + ++ ++ A+ DE G +RL+GL +T L +VL L Sbjct: 314 THRATRLDFFPNDEDEIYHAAQDILDELGGYHHAIRLLGLTMTNLAALSFENVVLPL 370 >UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I5X9_METB6 Length = 365 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 125/353 (35%), Positives = 189/353 (53%), Gaps = 8/353 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER---RGVISTANYPARKFGVRSAMP 58 R ++H DMDCF+AAVEM D+P + + +G + RGV+STA+Y AR FGVRSAMP Sbjct: 11 RIVLHADMDCFYAAVEMHDHPEIAGKAVVVGADPQGGAGRGVVSTASYEARAFGVRSAMP 70 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A +LCP L Y S I IF R++ +S+DEA+LD++ V + Sbjct: 71 ISQAYRLCPGAVYLRPDMARYAAVSAEIMGIFKETGYRVQQVSIDEAFLDISP-VRSFDT 129 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A ++QTI + + +T S GVAP K +AKIAS KP+G V+TP FL LP+ Sbjct: 130 ARDLAVRLKQTIRDRVGITCSLGVAPSKIVAKIASGHQKPDGMTVVTPDSARDFLAPLPI 189 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 KIPG+G + A++EA+G+ T G++ CD+ +L+ FG+ +L E + G D +V Sbjct: 190 RKIPGIGGKTGAQIEALGITTIGNLATCDIQVLVGAFGRSAGLLREAALGHDNSEVVERD 249 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+ E T A D E A +E L E+ + +A +++++ F Sbjct: 250 GVKSISKETTFANDTEDPKEIAATMELLVREVAQAIADEALQF--KTVTIRVRYAGFVSK 307 Query: 299 TQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 T+ ++A + A A + E G+ +R +GL ++ L Q RQ L Sbjct: 308 TKARSLLHYHNDEAAIRAAAGELLRELWDGKPIRRLGLRLSTLRHQDSRQQTL 360 >UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBK8_9FIRM Length = 389 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 183/353 (51%), Gaps = 8/353 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D++ FFA+ E+ N AL P+ + G RR V+STA+Y AR +GV SAMP M Sbjct: 4 RVIFHIDLNSFFASAEVLKNSALEGQPVVVAGM-HRRSVVSTASYEARNYGVHSAMPLHM 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP L ++ G + Y+E S R++ +EP S+DE Y+DVT+++ + Sbjct: 63 ALEKCPQLVVVQGDYAWYEELSRRFFNYVKRFSPYLEPASIDECYIDVTEAIRAYKRPLD 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A I++ ++ +L+L S GV P KFLAK+ASDM KP G V+ E+ L L +A + Sbjct: 123 LAWRIQKGVYEDLRLPCSIGVGPSKFLAKMASDMRKPMGITVLRRQEIERKLWPLSIADM 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQK-CDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 G+GK + LE G+ T GD + ++ GK L + ++G ++ Sbjct: 183 FGIGKKTVPLLERQGIYTIGDFANPANEAKIMALMGKHAYQLIQNARGFGSNRLDYNTSV 242 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 +S+ T+ +I + E +++ +RL +L +R + DL A + +++ DF + Sbjct: 243 QSISQSTTLDTNIVEYEEVKSVFKRLANKLSQRAK--QEDLRGALISISIRYADFTNAVR 300 Query: 301 EHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER--QLVL 349 + L+ A +D+ G+ +R +G+ + L + Q+ L Sbjct: 301 STTISEYTNDADVLLEHALLLFDQHNNGKEIRHLGIGLGSLFSKTRTVDQINL 353 >UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3I3_JONDD Length = 413 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 116/352 (32%), Positives = 170/352 (48%), Gaps = 8/352 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++HVDMD F+A+VE+ P LR P+ + G R V+ A+Y AR+ GVRSAMPT A Sbjct: 23 VMHVDMDAFYASVEIAQRPELRGQPVIVAG--GERSVVLAASYEARELGVRSAMPTQRAR 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 L PH + R Y S + + T +E +S+DEAYLDV+ G+ + A Sbjct: 81 LLAPHAVWVAPRHHEYARISRSVMDYLDTITPWVEQVSIDEAYLDVSGIRGPQGTLSARA 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 QE+R + +T S GVA KFLAK+ S KP+G V+ + FL LP+ + G Sbjct: 141 QELRAQVKAHHGVTCSVGVAANKFLAKLCSTQAKPDGLLVLPRGQEQEFLNLLPIGALMG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 +G S +L+ GL T DV + ++ G G L ++GID+R V R+ KS Sbjct: 201 IGDKSERRLKQHGLHTIRDVAALEPSYVVALLGATLGNRLIHLARGIDDRPVTPTRVEKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 VG E T A+D A + L + RL LL VK++ +F T+ Sbjct: 261 VGAEHTFAQDEGSREVLRATVRSLADTVTSRLRS--RGLLARTISVKIRDVNFHTITRHV 318 Query: 303 VW--PRLNKADLIATARKTW-DERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P + + + A + G+ RL+G+ L P+ + L L L Sbjct: 319 TLHSPSQSLHVVFSQAWTLVDRQLLPGQRARLLGVRAEQLVPEEGQPLTLTL 370 >UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus RepID=C7RGQ0_ANAPD Length = 345 Score = 378 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 106/351 (30%), Positives = 188/351 (53%), Gaps = 10/351 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M I HVD D F+A+ E NP +++ P+A+GG + +++TANY AR+FG+ SAMP Sbjct: 1 MNYIFHVDCDAFYASCEELRNPKMKNHPLAVGGL-SNKSILTTANYKAREFGLHSAMPVF 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 +A +LCP+L LLP Y++ S + + Y +E +S+DEAYL + S Sbjct: 60 IAKELCPNLILLPVDHKYYRKKSKEVFSLVKEYAKLMEQVSVDEAYL-----LVETDSPK 114 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A+++++ + + + S G++ KFLAK+ASD KP+G I ++ FL + + K Sbjct: 115 KLARKLQEEVLRKTGIGISIGISYNKFLAKLASDWQKPHGITQIRKEDLDYFLPNISVNK 174 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + G+GK ++ +L +G+ D+ K D L+ FGK G ++ +G+D+R +N R+R Sbjct: 175 VHGIGKKTSERLNKIGIYKVEDLLKLDYEYLIDNFGKQGAYIYHVIRGVDDRKINPSRVR 234 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G ERT A++ + + + ++ L +E + ++ +K+K F+ T+ Sbjct: 235 KSIGKERTFAQNTNDMAILTSYLKNLSELIEDEMDI--KNIQGKTVNLKIKDAKFKNHTR 292 Query: 301 EHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 P D+ A ++ G +RL+G+ ++ L + QL Sbjct: 293 SITLQEPIYRAKDIYNEALSLLEDLHKGEMLRLIGISLSNLQERKLNQLSF 343 >UniRef50_A7REV5 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7REV5_NEMVE Length = 870 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 115/397 (28%), Positives = 174/397 (43%), Gaps = 54/397 (13%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV--------------------- 40 R I+H+DMDCFF +V +RD+P L P+A+ G Sbjct: 284 RVIMHIDMDCFFVSVYVRDHPELDGKPVAVSRFNGGGGCELKSSHIVNYEMSFPTGFVAD 343 Query: 41 ----------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASN 84 I++ +Y AR+ GVR+ M G A KLCP +T +P FD Y++ S Sbjct: 344 LTSPDKSSAFFNSMSEIASCSYAARECGVRNGMFLGQARKLCPDITCVPYLFDKYRQVSQ 403 Query: 85 HIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAP 144 + EI Y+ IE +S DEA+LDVT S+ +AQ+IR I + ASAG++ Sbjct: 404 RLYEILVSYSHDIEAVSCDEAFLDVTHSLDAGTEPMALAQQIRAEIRAATRCNASAGISS 463 Query: 145 VKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV 203 LA++ + + KP+GQF ++ +V F+ + +PGVG + KL MG+ TC D+ Sbjct: 464 NVLLARMCTRIAKPDGQFYLSREDDVIQFMASQKAKDLPGVGWALSKKLNDMGVETCADL 523 Query: 204 QKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAI 262 QK L L K FG K G L +G+D+R + ER RKSV E E Sbjct: 524 QKLSLQALQKEFGPKTGLSLHRSCRGVDDRPLRVERERKSVSAEINYGIRFTQDYEGVKF 583 Query: 263 IERLYPELERRLAKVKPDLLIARQGVKLKFD------DF------QQTTQEHVW--PRLN 308 IE L E+ +RL +V +K++ + F ++ P + Sbjct: 584 IEELAGEVHKRLREVGLKGRCITLKLKVRQEGAPMPRKFMGHGICDNVSRSATLVEPTDD 643 Query: 309 KADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQME 344 + + R +G+ V+ L Sbjct: 644 NSVIARECLNLLKTLNIPAHDFRGLGIQVSKLTNSSA 680 >UniRef50_Q1N612 DNA polymerase IV n=1 Tax=Bermanella marisrubri RepID=Q1N612_9GAMM Length = 366 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 162/351 (46%), Positives = 222/351 (63%), Gaps = 14/351 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R+++HVD DCFFAAVEMRD+P RDIP+AIGGS +RRGVIST NY AR +GVRSAMP+G Sbjct: 3 RQVLHVDCDCFFAAVEMRDSPQYRDIPLAIGGSSDRRGVISTCNYVARAYGVRSAMPSGQ 62 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 ALKLCP L L+ G + Y+ S + I Y E +S+DEAY++++ + Sbjct: 63 ALKLCPDLMLIRGDMEKYRRVSREVMSIVESYGLAFEQVSIDEAYIEISPHS----PGKI 118 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ+IRQ + E+ +T S G+AP K+LAK+ASD NKPNGQFV+ P + F++TLP+ KI Sbjct: 119 IAQQIRQQVEAEIGITVSVGIAPNKYLAKVASDWNKPNGQFVVEPQALNEFVRTLPVGKI 178 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PGVG SA KL MG+ +C DVQ +L LLKRFG+FG+ L++RS+GID+R +++ R RK Sbjct: 179 PGVGPKSAEKLANMGIHSCADVQAIELADLLKRFGQFGKKLYDRSRGIDDRTLSNGRERK 238 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT-- 299 S+ VERT A DI E + + + L+ + R+ L VK+KF DFQ TT Sbjct: 239 SLSVERTFANDIESEEELQQVAQDLWLRFQSRIEANAIRLRDVTPFVKVKFADFQVTTLA 298 Query: 300 -QEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + + +LI AR+ R + +RL+G+ Q Q+ L Sbjct: 299 NHQKTVDLDSFIELIQQARR-----RQEKSIRLIGIGAR--LKQNLTQMEL 342 >UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteobacteria RepID=Q2RNH1_RHORT Length = 421 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 183/345 (53%), Gaps = 6/345 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I H+D D F+A+VE RDNP+LRD P+ +G RGV +TA Y AR+FG RSAMP Sbjct: 37 DIAHIDCDAFYASVEKRDNPSLRDRPLIVGH-PGGRGVATTACYIARRFGARSAMPMFKC 95 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L+LCP ++P YK S +R I T R+EPLSLDEAYLD+++ H + Sbjct: 96 LELCPEAVVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEHRFARPPAV 155 Query: 123 A-QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + I + + E+ +T S G++ +FLAK+ASDMNKP G VI AE PA L +P+ ++ Sbjct: 156 SLATIARRVEREIGITVSIGLSSNRFLAKLASDMNKPQGFTVIDEAEAPALLAPMPVKRL 215 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVG + +L +GL T GD+Q LL RFGK GR L + G R ++ +R K Sbjct: 216 HGVGAATERRLAELGLHTIGDLQGRPEADLLARFGKIGRALHAHAWGRGGRTISPDRETK 275 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ E T D+ + + L + R L + L A +KLK DF+ T+ Sbjct: 276 SISAETTFERDLSRLPDLARALGPLSERVARAL--TRNALAGATVVLKLKTHDFRILTRH 333 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 P + AR+ + GR RL+G+ + L P E Sbjct: 334 ARLGDPTARAEVIAGAARRLLERETDGRRFRLIGVGMADLRPGSE 378 >UniRef50_UPI0001982DE6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001982DE6 Length = 1137 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 111/359 (30%), Positives = 176/359 (49%), Gaps = 20/359 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG--VISTANYPARKFGVRSAMPTG 60 IIH+DMDCFF +V +R+NP L+D P+A+ S +G IS+ANYPAR +GV++ + Sbjct: 396 VIIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVR 455 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCPHL + P F+AY+E ++ I ++ ++++ +S DEA+L+V DS G Sbjct: 456 DAKALCPHLVIFPYNFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEVMDSKE--GDPE 513 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A IR+ IF TASAG+A +A++A+ KPNGQ I +V +L LP+ Sbjct: 514 LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKA 573 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239 +PG+G V KL + TCG ++ L + FG K G +LW +G+D R V + Sbjct: 574 LPGIGHVLEEKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQE 633 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF---- 295 KS+G E + + + L E+ RL +K + D Sbjct: 634 SKSIGAEVNWGVRFNDLKDSRHFLVNLCKEVTLRLKGCGVQGRTFTLKMKKRRKDAGEPA 693 Query: 296 --------QQTTQEHVWP--RLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQM 343 + + P + + A + + + +R +GL V+ L+ Sbjct: 694 KYMGCGDCENLSHSMTVPLATDDVDVIQRIATQLFGFFHIDVKDIRGIGLQVSRLENAD 752 >UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella parvula ATCC 17745 RepID=D1YPB9_9FIRM Length = 510 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 114/329 (34%), Positives = 170/329 (51%), Gaps = 6/329 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVDMD FFA++E D+P + P+ +GG RGV++T +Y ARKFGV SAMP Sbjct: 3 RWIMHVDMDAFFASIEQLDHPEYKGHPVIVGGL-SSRGVVATCSYEARKFGVHSAMPISR 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP + R D YKE SN I I +T IEPLS+DEA+L+V+ + Sbjct: 62 AKKLCPDGIYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKA 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + I+ +F + L SAG+AP KFLAK+ASD++KP+G VI L LP+ +I Sbjct: 122 LGRAIKDRVFEQTGLIISAGLAPNKFLAKLASDLDKPDGLVVIPYGRERKVLAPLPIKRI 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCD-LVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 GVG + L+A G +Q L+ G + +WE + GID+R V ++R Sbjct: 182 WGVGPRTEKILKAGGFHLMRHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVETDRKT 241 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 +S+G E T ED+ E L + + L +K+++DDF ++ Sbjct: 242 QSIGAEETYEEDLTEGRAIELEFRYFANRLSK--RLRRRSLYGHTVSIKVRYDDFTTVSR 299 Query: 301 EHVWPRLNKAD--LIATARKTWDERRGGR 327 + + + TA W++ + Sbjct: 300 QKRLDTPSDHEHVFFETALLLWNKLMQDK 328 >UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIK9_HALO1 Length = 409 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 135/358 (37%), Positives = 193/358 (53%), Gaps = 13/358 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++HVD+D FFA+VE RD+P+LR P+ +GGS E RGV++ A+Y AR++GV SAMP + Sbjct: 6 RTVLHVDLDAFFASVEQRDDPSLRGKPVLVGGSAE-RGVVAAASYEARRYGVHSAMPMAV 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP ++ Y EAS I ++ +EPLSLDEA+LD+T S G A Sbjct: 65 ALRRCPQAVVVRHSMGRYAEASRAFFAILDHFSPLVEPLSLDEAFLDLTGSERLLGDART 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +AQ I+ + EL L S GVA KFLAKIASD++KP+G V+ P V +FL LP++++ Sbjct: 125 VAQTIKDRVRAELSLVVSVGVASTKFLAKIASDIDKPDGLCVVEPDRVESFLHPLPVSRL 184 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVG V+ KL MGLRT GDV + +L R GK G L + G D R V Sbjct: 185 WGVGAVTQDKLHQMGLRTIGDVARYPSSVLSARLGKSMGAHLSALASGYDPRPVERPGKP 244 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 S+G E T D+ S+ A++ + + DL +K+K+ DF+ T+ Sbjct: 245 VSIGHEETFEVDLGRKSDIAAVLLGQADRVAA--RLRRADLRARVVQLKIKYADFRLLTR 302 Query: 301 EHVW--PRLNKADLIATARKTWDERR------GGRGVRLVGLHVTLLDPQME-RQLVL 349 ++ + A A E VRL G+ ++ L+ + RQL L Sbjct: 303 RRSLADATVDGGVIGAVAVAMLGELEVAENRGKAYAVRLCGVSLSGLEDREGPRQLTL 360 >UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIB1_KYTSD Length = 407 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 118/353 (33%), Positives = 179/353 (50%), Gaps = 10/353 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++HVDMD F+A+V + D P LR P+ +GG R V+ +A Y AR FGVRSAMP A Sbjct: 12 VLHVDMDAFYASVALVDRPELRGQPVIVGG--GHRSVVLSATYEARAFGVRSAMPMARAR 69 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP T++ + Y S + EIF + T ++P S+DEA+LDVT + GS +A Sbjct: 70 RLCPQATVVRPDHERYAAVSAAVMEIFRQVTHAVQPTSVDEAFLDVTGTSRRWGSPLQVA 129 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + IR+T+ E +T S G+ P F+AK+AS KP+G +TPAEV +FL L + + G Sbjct: 130 EWIRRTVAAEQHITCSVGIGPNPFVAKVASGQAKPDGTRQVTPAEVVSFLHPLDVGVLWG 189 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 VG+ + +L GL T V +V L + G G L ER+ G D + V K+ Sbjct: 190 VGEKTQEQLARFGLTTVAQVAHTPVVTLQRIVGDHAGAALAERAWGRDPQRVRPVVAEKT 249 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G +T DI + E + L + R ++ V ++F DF + Sbjct: 250 IGNGQTFDHDIDDPRQVETRLLLLSDRVAARARTA--GVMGRTVQVTVRFADFTTVQRSR 307 Query: 303 VW--PRLNKADLIATARKTWDERRGGRG-VRLVGLHVTLLDP--QMERQLVLG 350 P ++ AR+ + R VR+V + ++ L P + RQ +L Sbjct: 308 TLQRPSDVSREIHQVAREVFASLGLQRARVRMVRVTLSGLTPTDRTPRQGMLD 360 >UniRef50_B9HS71 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS71_POPTR Length = 1191 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 113/365 (30%), Positives = 180/365 (49%), Gaps = 20/365 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG--VISTANYPARKFGVRSAMPTG 60 IIHVDMDCFF +V +R++P L D P+A+ S +G IS+ANYPAR +GV++ + Sbjct: 440 TIIHVDMDCFFVSVVIRNHPELHDKPVAVCHSDNPKGTAEISSANYPARNYGVKAGIFVR 499 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP L + P F AY+E ++ + I ++ +++ +S DEA+LD+T+ G Sbjct: 500 DAKALCPQLVIFPYNFKAYEEVADQLYNILHKHCHKVQAISCDEAFLDITE--KDMGDPE 557 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A IR+ IF+ TASAG+A +A++A+ KPNGQ I V +L LP+ Sbjct: 558 LLASTIRKEIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCYIPSVSVDEYLHKLPIKA 617 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239 +PG+G V KL+ + TCG ++ L K FG K G +LW S+G+D R V + + Sbjct: 618 LPGIGHVLEEKLKKQNVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRLVGNIQE 677 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF---- 295 K++G E + + + L E+ RL + +K + D Sbjct: 678 SKTIGAEVNWGVRFKDLQDSQCFLLNLCKEVSFRLQGCRVQGRTFTLKIKKRRKDAGEPA 737 Query: 296 --------QQTTQEHVWP--RLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQME 344 + + P + L ++ + + +R VGL V+ L+ Sbjct: 738 KYMGCGDCENLSHSMTVPIAIDDVEALQRITKQLFGSFCLDVKDIRGVGLQVSKLENADP 797 Query: 345 RQLVL 349 + VL Sbjct: 798 SKQVL 802 >UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomycetales RepID=C5BW73_BEUC1 Length = 415 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 122/352 (34%), Positives = 174/352 (49%), Gaps = 8/352 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD FFA+VE+ P LR P+ +GG E RGV+ A Y AR FGV SAMP A Sbjct: 23 ILHVDMDAFFASVELIRAPDLRGRPVIVGG--EHRGVVLAATYEARAFGVHSAMPMTRAR 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 LCP ++P Y+E S + + + T +E +S+DEA+LDV+ + GS IA Sbjct: 81 ALCPQAVVIPPDHARYEEVSRVVMGLLADVTPVLEQVSVDEAFLDVSGARRRLGSPVAIA 140 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 IR I Q+ AS GVA KFLAK+AS KP+G ++ A FL +LP+ + G Sbjct: 141 TAIRSRIREVAQIPASVGVASTKFLAKLASQTAKPDGLLLVPEAASVPFLHSLPVGALWG 200 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKS 242 VG+ +AA+L G+ + + +L +R G+ G L++ + D R V R+ KS Sbjct: 201 VGERTAAQLREWGIESVEQLAHTPPDVLQRRLGRAGGARLYDLAWNRDPRPVTVARVEKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 + E T D+ +E + RRL + L +K++ DF T+ Sbjct: 261 ISSEHTFVTDVTDAAELGRTLLEQAHRCARRLR--RGGFLARGVTIKVRMSDFTTLTRSR 318 Query: 303 VW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVLGL 351 P D+ A AR R GVRL+G+ V L + L L Sbjct: 319 QLDHPSDVAHDVYAAARALLAAVTIPRDGVRLLGVRVDQLTAAAATPVQLAL 370 >UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX0_BREBN Length = 413 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 107/359 (29%), Positives = 166/359 (46%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R + +DM F+A++E NP LR+ PI + G ERR GV+ A A+ +GV +A Sbjct: 7 RIVFLIDMQSFYASIEKGANPELRNKPIVVAGDPERRSGVVLAACPIAKSYGVVAAEALW 66 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + C L ++ R + Y S I IF +T ++EP S+DE +LDVT SVH G Sbjct: 67 QAQQKCRQLVVVRPRMEMYIRISMQITRIFEAFTDKVEPYSIDEQFLDVTGSVHLFGDPL 126 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASD-MNKPN--GQFVITPAEVPAFLQTLP 177 +A +IRQ ++ E + G+ K LAK+A D K G F + + L LP Sbjct: 127 QMAAQIRQRVWMETGINCRVGIGENKVLAKMACDNFAKKREEGVFWLKRETLADTLWKLP 186 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV--N 235 + K+ GVG MG+ G + +L + +G G +LW + GID+ V + Sbjct: 187 IEKLFGVGSRMKRHFHRMGVYQIGQLADMRPAILTRHWGVNGEVLWRTAHGIDDSPVALD 246 Query: 236 SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD- 294 S +K +G T+ D H SE + ++ L E+ RR K +L+ + V + D Sbjct: 247 SYDSQKGIGHHMTLPRDYHTASEIKVVLLELCEEVCRRAR--KKELMGSVLSVGCRGADL 304 Query: 295 --FQQTTQE--HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 ++ + L A +D VR +G+++ L P QL L Sbjct: 305 AAGTGFGRQMKLTEQTNDAMTLYEAACFLFDRHWQETPVRSIGVNLGQLVPDNVVQLNL 363 >UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=Veillonella RepID=D1BPW6_VEIPT Length = 500 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 114/326 (34%), Positives = 169/326 (51%), Gaps = 6/326 (1%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +HVDMD FFA++E D+P + P+ +GG RGV++T +Y ARKFGV SAMP A K Sbjct: 1 MHVDMDAFFASIEQLDHPEYKGHPVIVGGL-SSRGVVATCSYEARKFGVHSAMPILRAKK 59 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQ 124 LCP + R D YKE SN I I +T IEPLS+DEA+L+V+ + + Q Sbjct: 60 LCPDGIYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKALGQ 119 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 I+ +F + L SAG+AP KFLAK+ASD++KP+G VI L LP+ +I GV Sbjct: 120 AIKDRVFEKTGLIISAGLAPNKFLAKLASDLDKPDGLVVIPYGREKEVLAPLPIKRIWGV 179 Query: 185 GKVSAAKLEAMGLRTCGDVQKCD-LVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 G + L+A G G +Q L+ G + +WE + GID+R V ++R +S+ Sbjct: 180 GPRTEKILKAGGFHLIGHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVETDRKIQSI 239 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G E T ED+ E L + + L +K+++DDF +++ Sbjct: 240 GAEETYEEDLTEGRAIELEFRYFANRLSK--RLRRRSLYGHTVSIKVRYDDFTTVSRQKR 297 Query: 304 WPRLNKAD--LIATARKTWDERRGGR 327 + + TA W++ + Sbjct: 298 LDTPSDHEHVFFETALLLWNKLLQDK 323 >UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM Length = 415 Score = 373 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 106/358 (29%), Positives = 165/358 (46%), Gaps = 12/358 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNP------ALRDIPIAIGGSRERR-GVISTANYPARKFGVR 54 + HVD++ F + LR +P A+GG E+R GV+ + PA+KFGVR Sbjct: 3 KVYFHVDVNSAFLSWSALKKLRAGETLDLRTVPSAVGGDEEKRHGVVLAKSSPAKKFGVR 62 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + A CP L + P FD Y + S + I YT +E S+DEA+LD+T + Sbjct: 63 TGESLFSARLKCPELIVTPPDFDFYVQNSKALIAILRDYTPDVEQYSIDEAFLDMTGTEA 122 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 G +A IR + EL T + GVA + LAK+ASD KP+ + P EVP + Sbjct: 123 LFGPPLTVAHTIRNRVREELGFTVNIGVASNRLLAKMASDFEKPDKVHTLFPEEVPDKMW 182 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP+ + GVG + +L G+ T GD+ + + +++ FG G LW + G + V Sbjct: 183 PLPVGSLFGVGPSAVKRLNQCGIYTIGDLARTERRVIVGIFGTRGDTLWNYANGREADPV 242 Query: 235 NSERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 + R + G T+ +D+ + +A + L + RRL V+L + Sbjct: 243 TKQTTRDNTYGNSVTLPQDLTRPEQADATLLALCDSVGRRLRTDGK--TARVVTVQLVDN 300 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F++T+ + P + L A + + GR VRLVG+ QL L Sbjct: 301 AFRRTSHQRTLPDPTNSTDRLYEVALQLMRQMWPGRPVRLVGVSAEKTGTDNFEQLDL 358 >UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Coriobacteriaceae RepID=C7MN57_CRYCD Length = 454 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 117/343 (34%), Positives = 179/343 (52%), Gaps = 6/343 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+ +D+D FFA+VE D+PA R P+ +GG+ E RGV+STA+Y AR +GV SAMP+ Sbjct: 27 RAIMLLDLDAFFASVEQLDHPAWRGKPVIVGGNPEARGVVSTASYEARTYGVHSAMPSST 86 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP+ PGRF Y+E S + I + +E +S+DEA+LD+T S Sbjct: 87 AKRLCPNAFWTPGRFSRYREISRQVMSIMEDESPALEQVSIDEAFLDITPSRAQTEHPAA 146 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IAQ I+Q + EL +T S G+ K +AK AS+ +KP G ++ P FL LP + Sbjct: 147 IAQRIQQRVC-ELGITCSIGLGRSKAVAKTASEAHKPRGLTIVPPGYEETFLAGLPTKAM 205 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + L G+ T G V + D V+L FGK ++ +R +G D+ V K Sbjct: 206 SGIGPAAQQALRKFGITTLGQVAQADDVILNHVFGKNASLMRDRCRGCDDSPVMHPAGAK 265 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV E + A D+ + EA + + ++ RR+ L+ + +KL+ DF + + Sbjct: 266 SVSNEMSFAVDLTSREDIEAALSTVAAKVGRRMRM--NGLVGSTLSLKLRRGDFSIHSAQ 323 Query: 302 HVW--PRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDP 341 P ++ + D G VRLVG +T ++ Sbjct: 324 CHLDIPCDDEYVITPILFDLLDRVWRPGDSVRLVGCALTHIEE 366 >UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_STRCO Length = 479 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 124/357 (34%), Positives = 176/357 (49%), Gaps = 13/357 (3%) Query: 1 MRK---IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAM 57 MR I+H+DMD FFA+VE P+LR + +GG RGV++T +Y AR FGV SAM Sbjct: 1 MRTAPTILHLDMDAFFASVEQASKPSLRGKAVVVGGL-GPRGVVATCSYEARVFGVHSAM 59 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT--DSVHC 115 P G A +L PH L RF+ Y+ S + + + +EPLSLDEA++D+ + Sbjct: 60 PMGQARRLAPHAAYLVPRFELYRSISEQVMRLLRELSPLVEPLSLDEAFVDLDAGGAARD 119 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 +A L ++R I LT S G+A K LAKIAS+ KP+G +I P A L+ Sbjct: 120 AETARLAGTKLRTDIRTVTGLTGSVGLAASKMLAKIASEAAKPDGLVLIPPGTERAMLEP 179 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDV 234 + + +PGVG + L G+ T G++ + L++ GK G L+ + DER V Sbjct: 180 MTVRTLPGVGPATGDHLRRAGITTVGEIAEAGEDELVRLLGKAHGHALYAMALARDERPV 239 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +ER KSV VE T DIH + RL RRL L +K++ D Sbjct: 240 VAERETKSVSVEDTYDVDIHDRVRVGVEVGRLADRCVRRLRA--SGLSGRTIVLKVRRYD 297 Query: 295 FQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F T+ P + A + A + D GVRL+G+ V+ L Q L Sbjct: 298 FSTLTRSETLRGPTDDPAVVREAAARLLDSVDTTGGVRLLGVGVSGL--ADYTQEDL 352 >UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM9_ERYRH Length = 392 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 183/351 (52%), Gaps = 7/351 (1%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I H+D++ F+A+ + + +L P+ + +R V++TA+Y AR FGV SAMP A Sbjct: 4 VIFHIDINAFYASAHLITDSSLYGKPVVVCS-NQRGSVVTTASYEARSFGVNSAMPLAHA 62 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP+L ++ FD Y+E S I Y++ ++P S+DE Y+D+T+ + + + Sbjct: 63 KRLCPNLEVIEVDFDLYQELSVKFMNIIRSYSAVMQPASIDECYVDMTEVIKKYEKPLDL 122 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A EI++ I+ L+L S GVAP KFLAK+ASDM KP G V+ EV L L + + Sbjct: 123 AVEIQKNIWEALRLPISIGVAPNKFLAKMASDMQKPRGITVLRIREVSQKLWPLSIESMY 182 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 G+G+ + KL+ +G+ T GD+ + + L G + +++ G D ++++ KS Sbjct: 183 GIGQKTVPKLKQIGIETIGDLARFNPDHLKSILGVNAQNFVQKANGYDHSVIDTDVTMKS 242 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G +T + + E I E++RR+ + D++ ++ DD++ T+ Sbjct: 243 IGQSKTFKDAMTDLDEIRNAILNELVEVKRRME--RQDVVGKTVSFSIRLDDYKTATRSF 300 Query: 303 VWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVL 349 + + + +DE G GV + + +T L P+ E QL + Sbjct: 301 TFDEYTRDQNLVFERLMSLYDEFEGEGGVSFISVTMTNLLPKDEIIEQLNI 351 >UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacillus RepID=A8YTI5_LACH4 Length = 406 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 128/359 (35%), Positives = 189/359 (52%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS---RERRGVISTANYPARKFGVRSAMP 58 R+IIH+DMD F+A+VE + NP L++ + IG GV++T NY ARK+GV SAMP Sbjct: 47 RRIIHLDMDAFYASVETQRNPELKNKALVIGQDPRNNGGHGVVATCNYVARKYGVHSAMP 106 Query: 59 TGMALKLCP--HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 A+KL P L + F Y+ S I T ++E ++LDEAYLDVT + Sbjct: 107 AIKAVKLIPKSELVFVRPDFKKYRSVSAKIHSFMHEITDKVESIALDEAYLDVTHNKLGQ 166 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 A +A +++ I EL L +S GV+ KFLAK+ S+ KP G+ VI P E FL Sbjct: 167 NLAVQVAIGLQRRIRTELGLNSSFGVSYNKFLAKMGSEYAKPFGRTVILPYEAKQFLGMQ 226 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV-- 234 + K PGVG + +L MG+ T D+QK +L+K+F K G L + + GID R V Sbjct: 227 KIEKFPGVGPKTQEQLHEMGIYTGADLQKVADFVLIKKFKKMGYFLAQHAHGIDLRPVIA 286 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +S+ RKS+G+ERT I+ E I LE L K + +K++ +D Sbjct: 287 DSDTNRKSIGMERTYEPAIYTRDEALTHIRHYCKHLEDELK--KRNFFAQTVVIKVRDND 344 Query: 295 FQQTTQEHVW--PRLNKADLIATARKTWDE--RRGGRGVRLVGLHVTLLDPQMERQLVL 349 F T+ P ++ D +AR+ +D+ +G+RL+G+ VT + + L Sbjct: 345 FDTVTKRRKLTKPSNSQYDYYDSARELFDKTSNFLEKGIRLIGVTVTDFKKDEYQTINL 403 >UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomycetales RepID=C7QBJ0_CATAD Length = 834 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 184/363 (50%), Gaps = 22/363 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I HVD+D F+A+VE P+LR P+ +GG RGV+STA+Y AR FGV SA+ TG+A Sbjct: 12 IFHVDLDAFYASVEQLHKPSLRGKPVVVGG-IGNRGVVSTASYEARAFGVHSALATGIAR 70 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS----- 118 + P+ L RF AY+ S + + + +EPLSLDEA++D++ + Sbjct: 71 RRAPNAAYLIPRFGAYQAYSERVMALMHELSPLVEPLSLDEAFIDISHLFGSLDTTTPHN 130 Query: 119 ----ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 A IA+++R I NE LTAS G K +AKIASD KP+G VI P +L Sbjct: 131 ATLEARRIAEDLRTRIKNETGLTASVGAGTSKLIAKIASDAEKPDGLVVIEPGTEQTWLD 190 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERD 233 LP+ + GVG +A +L +G T D++ L L G +G L+ ++G D+RD Sbjct: 191 PLPVRALWGVGPATAERLRKIGATTVADLRTLSLTELTTVVGASYGTTLYAIARGQDDRD 250 Query: 234 VNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 V+++R KSV VE T AED+ + A ++ L L R+ K +K++ Sbjct: 251 VSTDREMKSVSVEDTYAEDLLDPATITAHMDDLVTRLSTRIRKAGR--SGRTITIKVRGH 308 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTW-----DERRGGRGVRLVGLHVTLLDPQMERQ 346 DF ++ P + + A + + G+RL+G+ +T L Q Sbjct: 309 DFTTVSRSETTPNPTDDLTTIRAATHRMLPGAVAAATQSVPGIRLLGVGLTGL--AEWAQ 366 Query: 347 LVL 349 + L Sbjct: 367 VDL 369 >UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobacterium hafniense RepID=B8G1R4_DESHD Length = 423 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 109/362 (30%), Positives = 176/362 (48%), Gaps = 18/362 (4%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTGM 61 I+ D + ++A+ NP L+ P+ + G R G+I TA+Y AR +GV++AMP Sbjct: 15 DIVLFDANSYYASCHQAVNPELQGKPLLVAGDPRNRTGIILTASYEARFYGVKTAMPLFQ 74 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSR--IEPLSLDEAYLDVTDSVHCHGSA 119 ALKLCP +L F Y + S + EI RYT IE +S+DE + D S GS Sbjct: 75 ALKLCPEAVVLSPDFRLYLDLSRKMWEIVERYTDEDHIEVVSVDECFADFRGSHLLFGST 134 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNK--------PNGQFVITPAEVPA 171 IA+ +++ I EL L S GV+ K AK+ASD + P VI P E+ + Sbjct: 135 EEIARRVQKEILEELGLGVSVGVSYCKIFAKLASDYQRDPKTRVKLPRSFTVIAPGELES 194 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDE 231 + L + ++ G+G+ + +L +G+RT GD+ + L K FG +G L+ + G DE Sbjct: 195 KVWPLGVGELSGIGRQTEKQLADLGIRTIGDLAQASPQALRKGFGVYGAKLYAWANGRDE 254 Query: 232 RDVNSERLRK--SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVK 289 R V E K S+G T+ +DI + ++ L + R++ + + V+ Sbjct: 255 RPVTPEDQAKDHSIGRSITLPQDITDPEQGTEVLLFLADSVGRKVR--REETKAQTLTVQ 312 Query: 290 LKFDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 +K +F+ T P + + + K + G+ +RL+GL + L + QL Sbjct: 313 VKDAEFKTRTYSTTLFEPTDSTDVIYRESLKLLAKWPQGKPIRLLGLTASRLQ-KGIEQL 371 Query: 348 VL 349 L Sbjct: 372 SL 373 >UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PEH3_9FIRM Length = 415 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 108/355 (30%), Positives = 171/355 (48%), Gaps = 9/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+HVD D F+A+VE NPALR P+A+ G E R G++ + A+ FGV++ Sbjct: 6 RTILHVDCDAFYASVECLYNPALRGRPVAVVGDPELRHGIVLAKSQEAKLFGVQTGDALW 65 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + C +T +P F+ Y S +EIFS Y+ R E LDE+++D+T G Sbjct: 66 QARQKCKEITFVPAHFEKYLSFSRMTKEIFSEYSDRCESFGLDESWIDLTGCTELFGDGP 125 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A +IR+ I EL +TAS GV+ K AK+ SD+NKP+G VI + LP+ Sbjct: 126 AVATQIRRRIKEELGITASVGVSFNKVFAKLGSDLNKPDGMTVIAYDGFKEQVWPLPVKT 185 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN---SE 237 + VG+ + KL++ G+ T G + + + L RFGK GR+LW + G+D V+ ++ Sbjct: 186 LLYVGRATTGKLKSYGITTIGALAQAPITFLEHRFGKIGRMLWMFANGLDTSPVSNIGAK 245 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 L KS+G T D+ E + + L + RL + + ++ Sbjct: 246 SLIKSIGNSTTAPRDLITDQEIKITLYALCESISARLREH--SFRCKTVALTIRDSSLTS 303 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVL 349 ++ P +L A + + G VR +G+ L QL + Sbjct: 304 FERQLALKRPSCITQELFDAAFSLYKQHHKCGLPVRSLGVRAANLMLIDCMQLSI 358 >UniRef50_A6DIV6 DNA polymerase IV n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIV6_9BACT Length = 354 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 149/352 (42%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIHVDMDCFFAAVE+RD P L+ +A+GG+ +RRGVI+ ANY AR FGV SA+ T + Sbjct: 6 RKIIHVDMDCFFAAVEVRDQPELKGKAVAVGGAAKRRGVIAAANYEARNFGVHSALSTAI 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+ CP L ++ YKE S + +IF +YT +E +SLDEA+LDV++ HGS TL Sbjct: 66 ALRRCPELIIVRPNMSKYKEVSTEVFKIFRKYTHLVEAISLDEAFLDVSECPLHHGSGTL 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ I++ I+ + L ASAG+AP K+LAKIASD KP+G + I P + F+Q LP+ KI Sbjct: 126 IAEAIKKDIYAKTGLRASAGIAPNKYLAKIASDWMKPDGIYTIPPENIEKFVQQLPVKKI 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 GVGK + +L GL TC D+QK + L K G L E ++GID R+V + R R Sbjct: 186 WGVGKETLRELRKFGLETCADLQKISVKNLAKLIGTNRAEELLELAKGIDNREVKANRER 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLA---KVKPDLLIARQGVKLKFDDFQQ 297 KS ERT D+ EC ++ ++ E +++L + KP I +K+KF DF Sbjct: 246 KSYTRERTFDSDL-SHGECSDALKVIFDECKKKLKAYLEEKPQYKIKTSVLKVKFADFTS 304 Query: 298 TTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 TT E + + + K + + VRL+G V Q L Sbjct: 305 TTVECGDLNFEWSVIESLLTKALERNQL--RVRLMGCGV-KFTKHDSAQPDL 353 >UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_TREDE Length = 395 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 116/352 (32%), Positives = 181/352 (51%), Gaps = 7/352 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + HVD+D FFA+VE DNP P+ +GG + RGV+ST +Y ARKFGV SAMP Sbjct: 5 KVFFHVDIDAFFASVEQLDNPEYMGKPVIVGG-QSERGVVSTCSYEARKFGVHSAMPILQ 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A KLCP L GR D Y E S + IF +T I+ +S+DEA+L++T G+ Sbjct: 64 ARKLCPSGIFLRGRMDRYHEKSKEVMSIFKDFTPEIKQISVDEAFLNMTGMEKIFGTPKN 123 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A +++TI E LT S G A K++AKIAS +KP+G F++ E F+++LPL + Sbjct: 124 SALLLKKTIKEETGLTVSVGCAQNKYIAKIASGRSKPDGLFIVKAGEEIDFMKSLPLKDV 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLR 240 GVG + +L A GL + + +L G G L++ +G + + Sbjct: 184 WGVGGKTRERLIAAGLTSVPQIFNSSEHLLQSILGNASGSFLFQAVRGELYDVFSDDVKS 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 S+ ERT D+ +E + ++ L EL R+ K + VK++++DF + Sbjct: 244 HSISTERTFEHDLFSHAEIDDVMFYLASELMYRIFDEK--VKGKTVSVKIRYNDFTTVSV 301 Query: 301 EHVWP-RLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQ-MERQLVL 349 + + DL AR+ + ++ + +RL+GL + ++ E Q L Sbjct: 302 QSTGAVVNDTQDLFERARELFYKKFDNKTPIRLLGLCIMNIESDIPEAQTEL 353 >UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaproteobacteria RepID=B9JVH1_AGRVS Length = 428 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 120/344 (34%), Positives = 183/344 (53%), Gaps = 7/344 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 + H+D D F+A+VE RDNP L D P+ IGG +RGV+STA Y AR GVRSAMP A Sbjct: 44 TLAHIDCDAFYASVEKRDNPDLIDKPLIIGG--GKRGVVSTACYVARIHGVRSAMPMFKA 101 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L+ CP ++P + Y +R + T ++PLS+DEA+L++ + H + + Sbjct: 102 LEACPDAVVIPPNMEKYSRVGRQVRAMMEELTPLVQPLSIDEAFLELKGTEALHHAPPAL 161 Query: 123 A-QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + + I +E+ +T S G++ KFLAK+ASD+ KP G V+ AE FL P+ I Sbjct: 162 VLARLARRIESEIGITVSVGLSYCKFLAKVASDLQKPRGFSVVGEAEALDFLAPRPVTTI 221 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 GVGK A+ LE G+RT G +Q + L++R+G G+ L S+GID+RDV++ K Sbjct: 222 WGVGKAFASTLEKDGIRTIGQLQTMEESDLIRRYGSMGQRLARLSKGIDDRDVHTNDPAK 281 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SV E T +DI + + +L ++ RL K +L +KLK DF+ T+ Sbjct: 282 SVSAETTFFDDISRREDLVPHLRKLSEKVAWRLK--KQELAGHTVILKLKSADFKLRTRN 339 Query: 302 HVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM 343 P + T + ++ G RL+G+ ++ Sbjct: 340 RRLDDPTQLADRIFRTGLQMLEKEADGTKFRLIGIGISDFADPS 383 >UniRef50_Q654Y6 Os06g0691000 protein n=7 Tax=Poaceae RepID=Q654Y6_ORYSJ Length = 1125 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 112/359 (31%), Positives = 178/359 (49%), Gaps = 20/359 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG--VISTANYPARKFGVRSAMPTG 60 IIH+DMDCFF +V +R+ P L D P+A+ S +G IS+ANYPAR +G+++ M Sbjct: 378 TIIHIDMDCFFVSVVIRNKPELHDKPVAVCHSDNPKGTAEISSANYPARNYGIKAGMFVR 437 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CPHL ++P FDAY E ++ I +Y S+++ LS DEA+LD+T+ H + Sbjct: 438 EAKARCPHLMIVPYDFDAYGEVADQFYGILHKYCSKVQALSCDEAFLDMTEC--LHDNPE 495 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 + Q+IR IF + +ASAG++ +A++A+ KPNGQ I+ +V +L TL + Sbjct: 496 EVTQKIRNEIFGTTKCSASAGISGNMLIARLATRSAKPNGQCFISSEKVDGYLNTLSIKA 555 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239 +PG+G + KL++ + CG ++ L K FG K G +LW +GID V + + Sbjct: 556 LPGIGHTVSDKLKSKEVEYCGQLRNIPKESLHKDFGKKIGDMLWNYCRGIDHSVVEAVQE 615 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD------ 293 KSVG E + + E + L E+ RL +K + Sbjct: 616 TKSVGAEVNWGVRFNDNKDAENFLVNLSKEVCLRLEGCGVQGRTITLKLKTRRKGAGEPI 675 Query: 294 ------DFQQTTQEHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQM 343 D + ++ N L A++ + + VR VGL ++ L+ Sbjct: 676 KFMGCGDCETVSRSMTIAGATDNPVTLQRIAKQLFSSFCVDVKEVRGVGLKISRLEHAD 734 >UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteriaceae RepID=C8WAH8_ATOPD Length = 444 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 112/357 (31%), Positives = 171/357 (47%), Gaps = 12/357 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I +D+D FFA+VE D+P R P+ +GGS +RGV+STA+Y ARK+GV SAM + Sbjct: 23 KAIGLLDLDAFFASVEQLDHPEWRGKPVIVGGSPHKRGVVSTASYEARKYGVHSAMASAT 82 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A+KLCP PGR++ Y E S+ + T +E +S+DEA+ D+T + Sbjct: 83 AVKLCPQAIWTPGRYNRYSEMSSLVMGFLKDETPLVEQVSIDEAFFDITPGRFSKENPLE 142 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I + I++ + L +T S G+ K +AKIAS+ KP G + P FL LP+ + Sbjct: 143 ICKRIQKKV-AALGITCSIGLGTNKTIAKIASEQEKPRGLTAVFPGTESHFLAPLPIEAM 201 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS---ER 238 G+G A L G+RT G++ + D L G + R+QG + +V+ R Sbjct: 202 SGIGPAMAKTLHQQGIRTLGELSRADSTYLTSFVGNTASKMILRAQGKEVSEVHEAAHPR 261 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KSV ERT D+ E E I + + RRL K L +K+K + Sbjct: 262 DVKSVSNERTFETDLFDKQEIEEAIRHISGVVGRRLR--KKQLQGFTVTLKVKASATESH 319 Query: 299 TQEH--VWPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQME---RQLVL 349 T + P ++ A G+ VRL+G+ ++ + Q L Sbjct: 320 TVQKRMSIPTDDEHLFAEIAVNLLPTIWKEGQPVRLLGVGISSFTDEDNSKPVQTSL 376 >UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0S0R3_FINM2 Length = 347 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 112/348 (32%), Positives = 191/348 (54%), Gaps = 8/348 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 +H D+D FFA+ E+ DNP L+ +P+ +GG R +RG+I+TANY ARK+G+ SAMP A Sbjct: 5 FLHFDLDAFFASCEILDNPKLKHVPMVVGG-RSQRGIITTANYEARKYGLHSAMPIFQAK 63 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 K+ P+L ++ F+ Y+ S + ++ S ++++I+ +S+DE +D++ H +A Sbjct: 64 KIVPNLVIVAPDFEKYRRNSEKVFKVLSSFSNKIQKMSIDEGCMDIS---HIRMDRLELA 120 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 I++ + + L+ S G++ LAK+ASD NKP+G +IT ++P L L + KI G Sbjct: 121 NLIQENVRIKTGLSISIGISYNMSLAKLASDWNKPHGIKIITQDDIPNILLDLKVGKIQG 180 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 +G+ S KL +G++ D+ L + FGKFG ++++R +GIDER ++ R+RKS+ Sbjct: 181 IGRKSEEKLNKIGIKKVSDLYDLSRNNLRELFGKFGEVIYDRIRGIDERQLDLSRIRKSI 240 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 GVE T D+ +++E EL L K ++ +K+K +DF T+ Sbjct: 241 GVEYTFERDLKNYNELLNKASEFSEELSDDL--HKKNIKAKTIRIKIKLNDFSVITKSMT 298 Query: 304 WPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + +D+ + + + VRL G+ L QL Sbjct: 299 LEEYISDSSDIFRIVKYLVVNTKIEKSVRLFGITAANLSDTTFEQLKF 346 >UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteria RepID=DPO41_AGRT5 Length = 405 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 120/343 (34%), Positives = 180/343 (52%), Gaps = 7/343 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I H+D D F+A+VE RDNP L D P+ +GG +RGV+STA Y AR GVRSAMP AL Sbjct: 23 IAHIDCDAFYASVEKRDNPELADKPVIVGG--GKRGVVSTACYIARIHGVRSAMPMFKAL 80 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA-TLI 122 + CP ++ + Y IR + T ++PLS+DEA+LD++ + H + Sbjct: 81 EACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 + + E+ ++ SAG++ KFLAK+ASD+ KP G V+ AE +FL P+ I Sbjct: 141 LAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVVGEAEALSFLAARPVTTIW 200 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVGK AA LEA G+R +Q+ + L++R+G G+ L+ ++GIDER V++ KS Sbjct: 201 GVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNNDPVKS 260 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 V E T DI + I+ L ++ RL K + +K+K DF+ T+ Sbjct: 261 VSSETTFFHDISRHEDLVPILRSLSEKVAWRLK--KSGIAGQTVVLKMKTADFKSRTRNR 318 Query: 303 VW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM 343 P + T ++ G RL+G+ V+ L Sbjct: 319 RLDDPTQLADRIFRTGLALLEKETDGTKFRLIGIGVSDLRDAG 361 >UniRef50_C0ZB00 DNA polymerase IV n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB00_BREBN Length = 350 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 133/353 (37%), Positives = 190/353 (53%), Gaps = 14/353 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M+KI+H+D+D FFA+VE D P LR P+ +GG RGV+ST +Y ARK+GVRSAMP Sbjct: 1 MKKILHLDIDAFFASVEQLDRPELRGKPVIVGG-TGNRGVVSTCSYEARKYGVRSAMPVA 59 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 MA K CP LP R+ Y E S +R+IF+ YT R + + LDEAYLDV+ + +A Sbjct: 60 MARKKCPQGYYLPVRYSRYIEKSAEVRQIFTSYTERYQTVGLDEAYLDVSH----YENAV 115 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA++I++ I E LT S G++ LAKIASD+ KP+ +I P + L+ LP+ Sbjct: 116 PIARDIKRRIKRETGLTCSIGLSYNMSLAKIASDLKKPDAFVIIRPEQALDVLRPLPIGT 175 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + GVGK S L G+ T D + L FGKFGR L+ R++G D R++ +R Sbjct: 176 LHGVGKKSQELLAKKGIETVEDFWRLSLDEATTLFGKFGRSLYYRARGEDNREIEMDRAP 235 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS E T+ D+ I L E+E + + + +K+K+ DF Q T+ Sbjct: 236 KSSSRETTLPFDLFDRDAIAPIATSLLREVEEDIREEGVE--PQTITLKIKYADFTQRTK 293 Query: 301 EHV-WPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM---ERQLVL 349 +H N +L+ +D GVRLVG+ + Q QL + Sbjct: 294 QHKAVAGANWQELLDDLLDAFDYTA---GVRLVGVGFSNFAEQQGERYEQLSM 343 >UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia RepID=B9MMT7_ANATD Length = 411 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 105/357 (29%), Positives = 167/357 (46%), Gaps = 10/357 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE P LR+ P+A+ G E R G++ N A+ +G+++ Sbjct: 3 RVILHCDLNNFYASVECLYQPELRNKPVAVCGESELRHGIVLAKNQIAKSYGIQTGDVIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 ALK CP+L +L F Y S ++ I+S YT IEP +DE +LDV+ S S Sbjct: 63 QALKKCPNLVILKPNFPLYIRFSKLVQRIYSEYTDLIEPFGIDECWLDVSQSTGILRSGR 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EI++ I +EL LT S GV+ K AK+ SD KP+ VIT + LP Sbjct: 123 KIAYEIKERIKSELGLTVSVGVSFNKVFAKLGSDYKKPDAVTVITKENFKQIVWPLPAKD 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS---E 237 + VG + KL + + T GD+ K L + GK+G +LW + G+D V E Sbjct: 183 LLYVGSATEKKLSSRAIYTIGDIAKSSPEYLKRILGKWGEVLWIFANGLDTTPVTPPLFE 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 K +G T+ D+ + + E +I L + +RL + L V ++ Sbjct: 243 DNIKGIGNSITLPRDLTCYEDAEYVIRMLSESVAQRLR--QQYLKCYTVQVWIRDSFLFS 300 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLD-PQMERQLVLG 350 T++ P ++ A + + + + +R +G+ L QL Sbjct: 301 ITRQEKLKNPTFLAREISQKAFEIFKKHWNFKNSIRSLGVRALDLVCANSFYQLEFD 357 >UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DPO4_CLOTH Length = 399 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 175/356 (49%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE +P LRD P+A+ GS +R G++ NY A+K+ V++ Sbjct: 3 RVILHCDLNNFYASVECLYHPELRDKPVAVCGSIEDRHGIVLAKNYAAKKYKVKTGETVW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L ++ Y + S + R+I+ YT R+E LDE +LDV++S G T Sbjct: 63 EAKNKCPGLVVVKANHSLYYKFSKYARQIYEYYTDRVESFGLDECWLDVSESTLLFGDGT 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I EL +T S GV+ K AK+ SDM KP+ VIT + + LP+ Sbjct: 123 KIANEIRERIKRELGVTVSVGVSYNKVFAKLGSDMKKPDAVTVITENDFKEKIWGLPVEA 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VG + KL M + T GD+ C L+++ GK+G LW + G D V + E Sbjct: 183 LLYVGDSTKKKLNNMAVFTIGDLANCHSEFLVRQLGKWGYTLWSFANGYDTSPVAKNDCE 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KS+G T D+ + + +I L + RL +L + +K + Q Sbjct: 243 IPIKSIGNSLTAPRDLTNNEDVRILIYVLSESVGERLRSH--NLKGRTVQISIKDPELQT 300 Query: 298 TTQEHVWP--RLNKADLIATARKTWDERRG-GRGVRLVGLHVTLL-DPQMERQLVL 349 ++ +++ A + + + + VR +G+ VT L + Q+ L Sbjct: 301 LERQAGLDIHTSITSEIAQKAYEIFLKSWNWSKNVRALGVRVTDLVESDTCTQISL 356 >UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=C4G590_ABIDE Length = 447 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 25/373 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D +CF+A+VE+ +P LR P+A+GG+ E R G++ TA+Y A+++GV++ M Sbjct: 21 RTILHSDCNCFYASVELLHHPELRGKPVAVGGNPEARHGIVLTADYTAKRYGVKTGMALW 80 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A ++CP + LP R D Y S +EI+S YT +IEP +DE++LDV++S G Sbjct: 81 QAKQVCPDIIFLPPRMDLYLRFSRMAQEIYSEYTDKIEPFGIDESWLDVSESAGIKGDGY 140 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+EI + + EL +T S GV+ K AK+ SD KP+ + E A LP+A Sbjct: 141 AIAKEISERMKKELGITVSIGVSFNKIFAKLGSDYKKPDAITTMGKDEYKAKAWPLPVAN 200 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VG+ ++ K MG++T GD+ D +L+K+ GK G +L + G D+ V N+ Sbjct: 201 LLYVGRATSRKFADMGIKTIGDLATMDEGILIKKLGKIGSVLHAFANGYDDSPVKLENTS 260 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KSVG T +D+ + + ++ L + RL + + L+ + Sbjct: 261 APVKSVGNSTTTPKDMKTDEDVKIVLYILAESVAARLRE--NGFRCRTVEISLRDKELFH 318 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRG----------------GRGVRLVGLHVTLL 339 +++ A++ A + + + +R +G+ T L Sbjct: 319 FSKQVKLKNASNITAEIAEAAYLLYKKNYRLPADEEELKNSIPEFYQKPLRSIGICGTDL 378 Query: 340 DPQME-RQLVLGL 351 Q+ + + Sbjct: 379 VTDYYWEQMDIFM 391 >UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXH9_9BACL Length = 402 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 180/354 (50%), Gaps = 10/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 + I H+DM+CF+A+VE + NP L+ P+AI G + R G+I T+NY AR+ G+++ M G Sbjct: 3 KVIAHIDMNCFYASVEEKYNPELKGKPLAIAGEVKTRHGIIVTSNYEARELGIKTTMRVG 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A K+ P++ +L Y++ S I ++ YT +IE +S+DEAY+D++D Sbjct: 63 DARKIYPNIKILRPDMPKYQQESKLIFDLVREYTDKIEIVSVDEAYIDLSD----FSEPI 118 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 + I++ I+ +L + +S GV+ KF AK+ S++ KP G +I L L + + Sbjct: 119 KVIATIQRRIYKQLGMPSSVGVSFNKFFAKMGSNLKKPLGFSIINKKNYKDILWNLDIGE 178 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + G G S KL+ +G+ T GD+ + V+L G G L ++ G ++ R Sbjct: 179 MHGCGNASTKKLKKIGINTIGDIAVANEVILHSLLGVQGLRLKNKANGEGNSELKYTVDR 238 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+G +T D+ + I++L ++ R+ + + ++F DF+ T+ Sbjct: 239 KSIGNSKTFTNDLIDEDDILKEIKKLSEKVSSRVKS--RSYVGNNISIMVRFSDFKTITR 296 Query: 301 EHVWPR--LNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVLGL 351 P + D+ A + E +G+RL+G+ + + ++ L + Sbjct: 297 SKKIPEFICDTNDIFNYAWELLLEHYDFTKGIRLLGVSLNEIKKVKGLKVQLDI 350 >UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D1Q6_9CLOT Length = 435 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 110/360 (30%), Positives = 177/360 (49%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDN----P---ALRDIPIAIGGS-RERRGVISTANYPARKFGV 53 R I H+D++ F + E P LR IP A+GG + R G++ + A+++GV Sbjct: 21 RLIFHIDVNSAFLSWESVYRLSADPQALDLRTIPSAVGGDAKSRHGIVLAKSTLAKQYGV 80 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 + P AL+ CP LT++P RFD Y + S+ + E+ YT E S+DE +LD+T ++ Sbjct: 81 TTGEPLAQALRKCPQLTVVPSRFDYYIKCSHRMMELLETYTPDHEKFSIDEIFLDMTQTI 140 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 H G A IR+ I +EL T + GVAP K LAK+ASD KP+ + E+P+ L Sbjct: 141 HLFGQPLEAANRIRERIRDELGFTVNIGVAPNKLLAKMASDFEKPDKCHTLFAHEIPSKL 200 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ ++ VG + K+E +G+ T G + CDL +L G K+ + + G+D Sbjct: 201 WPLPIRELFFVGGAAQRKMENLGIHTIGQLASCDLAVLKAHLGEKYAVTIRGYANGVDVD 260 Query: 233 DV-NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 V + + K G T++ D+ + +I L + RL + +L V+LK Sbjct: 261 PVAEKDPINKCYGNSVTLSRDVSDYETACQVILSLCETVGARLRADR--VLCRNVCVELK 318 Query: 292 FDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 +F + + + P + + L A + E VRL+G+ +D QL L Sbjct: 319 DWEFHTQSHQMILPEPTDSTSALYGYACRLLREFWDRTPVRLIGVRAGKIDDDSFSQLSL 378 >UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRW0_ALIAD Length = 409 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 168/348 (48%), Gaps = 8/348 (2%) Query: 9 MDCFFAAVEMRDNPA-LRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKLC 66 M+ F+A+ +PA PIA+ G R G++ TA+Y AR GV+ MP AL C Sbjct: 1 MNAFYASCHAAVDPARYAGKPIAVAGDPSTRHGIVVTASYEARARGVKPPMPVHQALARC 60 Query: 67 PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEI 126 P L ++ F Y+ + + I +T +E +S+DE Y DVT V +A+ I Sbjct: 61 PELIVVRPDFHLYRAYARKVFAIVREFTPDVEIVSIDECYADVT-HVPGGDRPVHLARAI 119 Query: 127 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGK 186 + + + L L +S GVAP KFLAK+ASDM KP G + + + L L + + GVG Sbjct: 120 QARLLDSLGLPSSIGVAPNKFLAKMASDMKKPMGITELRSENIRSLLWPLAIEHMHGVGP 179 Query: 187 VSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER-LRKSVGV 245 +A +L +G+ T GD+ L +L + G L R+ GID R + +E KSVG Sbjct: 180 STAKRLRRLGILTIGDLAVQSLDVLARALGPRAAELKARANGIDPRPLETEPQPPKSVGH 239 Query: 246 ERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWP 305 T+A+D ++E E ++ L + R+ + L+ V ++ + + + Sbjct: 240 SMTLAKDAQTFAEVEGVVMDLCDRVASRMR--RYGLMGRVVAVAVRDRRMRTSRHQDTLA 297 Query: 306 RL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 + +L AR + VRL+G+ V L P+ + + L L Sbjct: 298 TYVRHTGELFQAARALFQRIWPTEPVRLLGVSVEGLVPRDGQGVQLHL 345 >UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FVJ8_9FIRM Length = 405 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 103/357 (28%), Positives = 163/357 (45%), Gaps = 13/357 (3%) Query: 4 IIHVDMDCFFAAVE----MRDNPA---LRDIPIAIGGSRE-RRGVISTANYPARKFGVRS 55 I HVD++ F + E +RDNP LR I IGG + R GV+ + A+K+G+ + Sbjct: 12 IFHVDVNSAFLSWESAKRLRDNPDALDLRTINAVIGGDEKMRHGVVLAKSPSAKKYGIMT 71 Query: 56 AMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 P A + CP L ++P + Y +S EI IE S+DEA+ D+T + Sbjct: 72 GEPLSHARQKCPELVVVPPDHELYAASSRKFIEILEEVAPVIEQCSIDEAFCDMTGTEKL 131 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 +G A +++ I+ EL T + G++ K LAK+ASD KPN + P E+ Sbjct: 132 YGDPIAFATKLKDRIYKELGFTVNIGISTNKLLAKMASDFEKPNRVHTLFPEEMATKFWP 191 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 LP+ + G GK +A +L ++G+ T G + K D MLL F G LWE + GI V Sbjct: 192 LPVESLYGCGKTTAKRLRSLGITTIGALAKADRQMLLSNFKSQGDYLWESANGISSSAVT 251 Query: 236 SERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +E K G T+ D+ I+ L + R+ K I+ V++ +D Sbjct: 252 AESPANKGYGNSVTLPYDVTDTENAHHILLSLCETVGARIRYDK--AYISVVQVQIVDND 309 Query: 295 FQQTTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F ++ P + A +D+ +RL+G+ + + Q L Sbjct: 310 FHHRCKQLSLPSATNVTEKIYEAACNAFDQGWDHAPIRLLGVSTSKATDESYEQYNL 366 >UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FCD1 Length = 419 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 176/352 (50%), Gaps = 9/352 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +H+DMD FF +VE+ P L P+ +GG R RGV+ +A+Y AR+FGV +AMP G A+ Sbjct: 26 LHLDMDSFFVSVELLSRPELVGRPVIVGG-RSGRGVVVSASYEAREFGVHAAMPMGRAMN 84 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQ 124 LCP ++P Y S + ++ ++ T + +S+DEAY+DV+ +V GS I Sbjct: 85 LCPFAEVIPPSHGLYSSYSQKVFDLVAQVTPDFQQVSVDEAYIDVSAAVRRLGSPVRITS 144 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 ++R I + L+AS G+A + +AK+AS KP+GQ ++ + FL +P+ +PGV Sbjct: 145 QLRAEIEAQTGLSASVGIAGSRVVAKLASTRAKPHGQLLVPLSATREFLDPMPIEALPGV 204 Query: 185 GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVG 244 G+ + G+R GD+ D + FG G LW + G+D ++ + +S+ Sbjct: 205 GEKTKEGFFRYGIRLIGDLAAVDEAWAGRVFGAHGHHLWRSAHGLDSHGMDRQVKDRSIS 264 Query: 245 VERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW 304 E T ED+ S+ E + RL ++ R+ + G+K + DF ++ Sbjct: 265 AEHTFNEDVWDLSQLEHELLRLADKVAHRVRADGK--VATTLGLKYRLADFTTLSRSITL 322 Query: 305 --PRLNKADLIATARKTWD--ERRGGRGVRLVGLHVTLLDP--QMERQLVLG 350 P ++ R + +GVRL+G+ L RQ+ L Sbjct: 323 DAPTDLAREIYEALRPAMRNLREQKSKGVRLLGVRAAGLMDFSASGRQVRLD 374 >UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidetes RepID=C6W6Q9_DYAFD Length = 416 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 7/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H D+D FF +VE + + L++ PI +GG RGV++ +Y R+FGV S MP M Sbjct: 10 RAILHFDLDTFFVSVERKQDSRLQNKPILVGG-TGDRGVVAACSYETRQFGVHSGMPMKM 68 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCP T++ G + Y + S + EI S++ E S+DE Y D++ Sbjct: 69 ARMLCPEATVIRGNGETYSKHSKEVSEIISQHVPVFEKASIDEFYADLSGMDKYFNC-YG 127 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +A ++RQ I E L S G+A K ++K+A+ KPN Q + P FL + + KI Sbjct: 128 MASDLRQRIIRETGLPISFGLATNKLVSKVATGEAKPNNQLRVEPGAEKTFLAPMEVQKI 187 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 P VG L +G+R +Q+ + M+ K FGK G LW R+ G+D + RK Sbjct: 188 PMVGDKMNQTLNNLGIRYVKTIQEMPMEMMGKVFGKNGVALWNRANGLDNSPIVPFHERK 247 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ERT +D + ++ + L +L D L + VK+++ DF +++ Sbjct: 248 SISSERTFGKDTGDVRKMREMVRAMAETLAFQLRT--GDKLTSCVSVKIRYSDFNTFSKQ 305 Query: 302 HVWPRLNKA-DLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVL 349 + LI + +D+ R VRLVG+ + L Q+ L Sbjct: 306 LKIAYTSADHVLIPHIERLFDQLYNRRMMVRLVGVSFSDLVTGNY-QINL 354 >UniRef50_B9X9L4 DNA-directed DNA polymerase n=3 Tax=Verrucomicrobia RepID=B9X9L4_9BACT Length = 368 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 119/328 (36%), Positives = 172/328 (52%), Gaps = 11/328 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I H+DMD F+A+VE RDNP LR P+ +G +RGV+ A+Y ARKFGVRSAMP+ +A Sbjct: 4 VIFHLDMDAFYASVEQRDNPELRGKPLIVGAPPTQRGVVCAASYEARKFGVRSAMPSVVA 63 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV------TDSVHCH 116 +LCP + R D Y+ SN I +I + + IE +S+DEAYLD+ +D Sbjct: 64 KRLCPDGFFIRPRMDHYRAESNQIMQIVAASGAIIEQVSIDEAYLDLSPVCQRSDLDSSL 123 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 SA +A +++ IF+E LT S G+A K LAKIASD NKPNG +I + FL+ + Sbjct: 124 LSAVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASDFNKPNGLTLIPERDKVLFLRPM 183 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P+ IPGVG+V+ L+ G+ T GD+Q L G FG L S G D R +++ Sbjct: 184 PIRAIPGVGRVTEEMLKKSGVETIGDLQDFP-GDLRSMVGSFGPTLKRFSFGEDNRQLDT 242 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 + KS+ E T +D + + E+ +L + + VKL++ DF Sbjct: 243 GDVIKSISSENTFLKDTEDRKILKTCLREQAEEIAAKLK--RKQIGAQTIQVKLRYSDFT 300 Query: 297 QTTQEHVW--PRLNKADLIATARKTWDE 322 T++ P AD+ Sbjct: 301 TLTRQLSVEEPITEAADIYRLGCYLLAR 328 >UniRef50_B1MZW7 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Leuconostoc RepID=B1MZW7_LEUCK Length = 361 Score = 363 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 127/356 (35%), Positives = 188/356 (52%), Gaps = 12/356 (3%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAM 57 +RKI+HVD+D F+A VEMRDNP LR+ P+ I RGV++TANY AR GV SAM Sbjct: 10 LRKILHVDIDAFYAQVEMRDNPELRNRPLIISRDPAETGGRGVVATANYVARALGVHSAM 69 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 A +L P L F Y++ S I IF +T +IEP++LDEAYLD+TDS H Sbjct: 70 SAVEARQLAPEGVFLSPNFKKYRQVSKTIHHIFHTFTEKIEPVALDEAYLDMTDS---HL 126 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 S IA +IR I E LT+S G++ K LAK+ S+ NKPNG VIT + +FL LP Sbjct: 127 SGASIAAQIRHQILKETGLTSSIGISHNKLLAKLGSEFNKPNGVTVITHDNMLSFLAELP 186 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + GVG + AK A+ + +++ L FGK G L+ +++G+ +V + Sbjct: 187 IGDFRGVGAKTKAKFSALKVENGLQLRQLPKETLRGLFGKMGENLYWQTRGVHFGEVQWQ 246 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 R ++SVG E T IH+ + ++L E+ L L +K++ D F Sbjct: 247 RQQQSVGKEATFRYFIHNEIDVHKAFKQLANEMIAALKV--KQLTGRTLNIKIRDDAFNT 304 Query: 298 TTQEHVWPRL---NKADLIATARKTWDE-RRGGRGVRLVGLHVTLLDPQMERQLVL 349 T+ ++ + TA+ ++E + VRL+GL ++ L ++ L Sbjct: 305 ITRAITRETPWPLSETLITQTAQSVFEEVIQTPFSVRLLGLSISNLQSSTFEEMTL 360 >UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9LBG3_RUMHA Length = 426 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 97/359 (27%), Positives = 169/359 (47%), Gaps = 13/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPA------LRDIPIAIGGSRE-RRGVISTANYPARKFGVR 54 + I H+D++ F + E LR+IP A+GG + RRG+I + A+ GV+ Sbjct: 6 KVIFHIDVNSAFLSWEAVYRLEQGGTVDLREIPCAVGGDKTKRRGIILAKSLSAKACGVK 65 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + P ALK CP L ++ Y++ S I Y+ +E S+DEA++D+T Sbjct: 66 TGEPLTEALKKCPSLIVVSAHHSMYRQYSQKFLNILREYSPSVEQYSIDEAFMDMTGMEK 125 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 G+ A +++ I EL T + G++ K+LAK+ASD KP+ + P E+ + Sbjct: 126 LIGNPVAFAHKLKNRISKELGFTVNIGISGNKYLAKMASDFEKPDKVHTLFPTEIKTKMW 185 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP++ + VG+ + L+ +G+ T GD+ D+ +L K G +W + G D V Sbjct: 186 PLPVSDLLFVGRATTQVLKKLGIYTIGDLANTDVEILKCHLKKQGESIWNFANGRDTSLV 245 Query: 235 NSERL-RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 SE K G T+A D+ + ++ L + RL K D+ V ++ Sbjct: 246 ESESQGNKGYGNSTTIAFDVTDEGTAKMVLLSLCETVAARLRKD--DVKAEVVSVSVRDF 303 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM-ERQLVL 349 + + + + V P ++ T +DE G +R +G+H + + + RQ+ L Sbjct: 304 EMKTVSHQRVMAAPTNITGEIYDTVCVLFDELWDGMPIRHLGVHTSRVSKEERGRQMSL 362 >UniRef50_C5JS23 DNA damage repair protein Mus42 n=2 Tax=Ajellomyces dermatitidis RepID=C5JS23_AJEDS Length = 1171 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 161/378 (42%), Gaps = 34/378 (8%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R +P L D P+AI I++ NYPAR FG+++ M Sbjct: 370 RYILHVDFDSFFAAVSIRKHPELVDQPVAIAHGTGPGSEIASCNYPARSFGIKNGMWMKA 429 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD---------- 111 AL++CP+L +LP F AY++AS E+ ++ +S+DEA +D+T Sbjct: 430 ALQMCPNLKVLPYDFAAYEQASRAFYEVILSIDGIVQSVSIDEALVDITGVCLDAGGSDG 489 Query: 112 -------SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ +R ++ S G+ A++A KP GQF + Sbjct: 490 RGISEGSIWREQEKADEIAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQL 549 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ TL + +PGV AKLE +G+ D++ L G K G LW Sbjct: 550 KPDAVLDFIGTLAVKDLPGVAHSLGAKLEELGVTFVKDIRDLSREKLTSSLGPKTGAKLW 609 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + ++GID +V + RKSV E + ++ E ++ L EL RRL + Sbjct: 610 DFARGIDNTEVGVQAPRKSVSAEINWGIRFVNQAQAEEFVQSLCDELHRRLVENLVKGKQ 669 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDERR-GGR 327 + + D + + A + Sbjct: 670 LTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVNLGVATNASDIIGREAITILRGFKFSPG 729 Query: 328 GVRLVGLHVTLLDPQMER 345 +R +G+ +T L+P + Sbjct: 730 DLRGLGVQMTKLEPVKQN 747 >UniRef50_Q2L7B2 REV1 n=7 Tax=Sordariomycetes RepID=Q2L7B2_NEUCR Length = 1343 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 107/374 (28%), Positives = 159/374 (42%), Gaps = 34/374 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF AV ++ P RD P + + I++ NYPARKFGV++ M Sbjct: 366 RYIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIASCNYPARKFGVKNGMWMKH 425 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 AL+LCP L +LP F Y+EAS + ++ +S+DEA +DVTD V Sbjct: 426 ALELCPDLKILPYDFPGYEEASRQFYDAILGIGGVVQSVSIDEALIDVTDIVMAEAGSSG 485 Query: 114 ---------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 +A ++R I + S G+ LAK+A KP GQ+ I Sbjct: 486 IGISEGSIWREQEKVDQMASKLRDRIKEQTDCHVSVGIGANILLAKVALRKAKPAGQYQI 545 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P E L L + +PGV AKLE +G++ D+++ L+ G K G LW Sbjct: 546 KPEEALDLLGELNVEDLPGVAHSIGAKLEELGIKFVKDIRQTSKERLISALGPKTGEKLW 605 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 E S+GID +V + +RKSV E + E E + L ELERRL Sbjct: 606 EYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQEEAEEFVRSLSQELERRLLSEGVKGKH 665 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDERR-GGR 327 + + D + + + + A + Sbjct: 666 LTMKIMRRAADAPLDPPKHLGHGKCDTFNKSVSFGVGTNSGEVIGKEAVAILRSYKFSPG 725 Query: 328 GVRLVGLHVTLLDP 341 +R +G+ +T L+P Sbjct: 726 DLRGLGIQMTKLEP 739 >UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2KZY4_9FIRM Length = 418 Score = 362 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 181/353 (51%), Gaps = 9/353 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD F+A+VEMRDNP L+D P+ IG RGV++T NY ARK+GVRSAM + A Sbjct: 14 IILHVDMDAFYASVEMRDNPTLKDKPLIIGAKPTERGVVATCNYEARKYGVRSAMNSKEA 73 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP L F+ YK S + EI YT ++E ++LDE YLD+T+ A I Sbjct: 74 FRLCPKAVFLYPDFEKYKAVSEELHEILESYTKQVEYIALDEGYLDLTEVAKDFSEAEKI 133 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVPAFLQTLPLAKI 181 +EI++ + EL+LT S G+A K AK AS+ KPNG F+I + L+ + + Sbjct: 134 GREIQRRVAEELRLTCSVGIAYGKTAAKTASEEKKPNGFFMIQRREDYVELLRDRDVRAL 193 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR- 240 VG +A +L + G+ T D+Q+ + +L G G++L E S GID R V R Sbjct: 194 FTVGAKTAERLYSFGIYTVKDLQEKEKEVLR-LLGNQGKMLLELSYGIDHRKVVPYRPED 252 Query: 241 -KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 +S+ E T ED+ +S + ++ L +E R + L +K+ F D + T Sbjct: 253 TQSISKEMTFQEDVTDYSFLDDVLFLLSFRVENRAK--RYGLYARGVSLKITFADMKTIT 310 Query: 300 QE--HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 + + L A + R VRL+G L+ RQL Sbjct: 311 RSALISESTQSAFSLYKNASALLQQI-PRRRVRLIGEGFYHLEENEGRQLSFS 362 >UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA41_MICLC Length = 431 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 168/347 (48%), Gaps = 7/347 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD FF +VE+R+ P L P A+ + R V+ +A+Y AR +GVRSAMP A Sbjct: 14 TILHVDMDAFFLSVELREQPDLEGRPAAVA-APSGRSVVLSASYAARAYGVRSAMPLAHA 72 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 LCP L ++P R Y+ S + + + T +E LS+DEA+LDV + G I Sbjct: 73 RALCPPLVVIPPRQQLYRAVSAEVMAVLADVTPVMEQLSVDEAFLDVAGARRRLGPPEHI 132 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 IR+ + + L L + G + VKF+AK AS KP+G ++ P FL LP+ ++ Sbjct: 133 GHLIRERVRSALGLPCTVGGSAVKFVAKTASTAAKPDGLLIVPPQRTLDFLHPLPVGRLW 192 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVG +A +L G+ T GD+ + D L FG GR ++GID R V +S Sbjct: 193 GVGPKAAERLARRGVATIGDLARVDPARLEASFGAAGREWASLARGIDPRPVAPRPAARS 252 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 +G + T D + + RL + RL + V+LK D ++ Sbjct: 253 IGADHTFDVDPVDVVGVDPEVLRLCHRVAARLRA--EQVTAGAVTVRLKAPDGSVRSRTA 310 Query: 303 VW--PRLNKADLIATARKTWDER--RGGRGVRLVGLHVTLLDPQMER 345 P DL+ AR+ E VRLVG+ L + ++ Sbjct: 311 RLARPTATGHDLLGPARRLVRELHAERPHPVRLVGVRAERLGDEADQ 357 >UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHB3_CORU7 Length = 477 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 167/350 (47%), Gaps = 9/350 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 MR + H+DMD F+A+VE P LRD P+ +GG RGV++ A+Y AR +G RSAMP Sbjct: 1 MRWVAHIDMDAFYASVEQLTRPTLRDRPVLVGGM-SGRGVVAGASYEARAYGARSAMPMH 59 Query: 61 MALKLCPH-LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A++LC + ++ R YK S I ++ + + +E LS+DE + + V +A Sbjct: 60 QAIRLCRNRAIVIQPRSVLYKMISRRIFQVIAEHAGVVEQLSVDEGFAEPQGLVDA-AAA 118 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A+++++ + +L S G+A K AK+ASD+ KP+G FV+ + A P+ Sbjct: 119 RRWAEDLQRAVEEATELPCSIGMASTKLDAKMASDLAKPHGIFVV--EDRMATFGPRPVG 176 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 + G+G+V+ AKL +G+ T D + GK G + + G D R V Sbjct: 177 DLWGIGRVAQAKLADIGVHTIQQFVDMDPTDVKSLLGKVGLEVQVMAGGDDPRPVAPRAE 236 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 K + E+T+ D + + I+E + RRL K VK++ DF T Sbjct: 237 AKQISAEQTLPVDARTYRDVLNIMELSARQAYRRLRKDGR--AARTITVKIRTSDFALHT 294 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 + P + L+ AR VRLVG+ + L + L Sbjct: 295 RSTTLPAPTDDFEQLLRAARAVLPRPEDSGAVRLVGVGFSGLSHDRQEML 344 >UniRef50_C0S277 DNA polymerase IV n=5 Tax=Onygenales RepID=C0S277_PARBP Length = 1161 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 105/392 (26%), Positives = 166/392 (42%), Gaps = 44/392 (11%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R +P L D P+AI I++ NYPAR FG+++ M Sbjct: 366 RYIMHVDFDSFFAAVSIRKHPELADQPVAIAHGTGPGSEIASCNYPARSFGIKNGMWMKG 425 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 AL++CP+L +LP F AY+EAS + E+ ++ +S+DEA +D+T+ Sbjct: 426 ALQMCPNLKVLPYDFAAYEEASRNFYEVILAIDGIVQSVSIDEALVDITNICLDAGGSDG 485 Query: 114 ---------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ++R ++ + S G+ A++A KP GQF + Sbjct: 486 IGISEGSIYREQAKADEIAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQL 545 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ L + +PGV KLE +G+ D+++ L G K G LW Sbjct: 546 KPDAVQDFIGELTVKDLPGVAHSLGGKLEELGVVFVKDIRELSKEKLTSSLGPKTGAKLW 605 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 ++GID +V + RKSV E + ++ E ++ L EL RRL + Sbjct: 606 NYARGIDNTEVGIQVPRKSVSAEISWGIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQ 665 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDERR-GGR 327 + + D + + A + Sbjct: 666 LTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVALGVATNASDIIGREAISILRGFKFSPG 725 Query: 328 GVRLVGLHVTLLDP----------QMERQLVL 349 +R +G+ +T L+P +RQL Sbjct: 726 DLRGLGVQMTKLEPVKQSNVRKVESSQRQLSF 757 >UniRef50_A3EWL3 Polymerase ATREV1-1105 n=8 Tax=rosids RepID=A3EWL3_ARATH Length = 1105 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 111/363 (30%), Positives = 176/363 (48%), Gaps = 24/363 (6%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG--VISTANYPARKFGVRSAMPTG 60 IIH+D+DCFF +V +++ L D P+A+ S +G IS+ANYPAR +GV++ M Sbjct: 374 TIIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVR 433 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A LCP L ++P F+AY+E ++ +I R+ +++ LS DEA+LDV+D Sbjct: 434 HAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVET--E 491 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 ++A IR I +ASAG+ +A++A+ + KP GQ I+ +V FL LP+ Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGT 551 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239 +PGVG V KL ++TCG ++ L K FG K G +LW S+G+D R V + + Sbjct: 552 LPGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQE 611 Query: 240 RKSVGVERTMAEDIHHWSE----CEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 KS+G E + + ++ L E+ RL + +K + D Sbjct: 612 SKSIGAEVNWGVRFRDQQDVFILVQHFLQCLCKEVSLRLQGCEMIGRTFTLKIKKRKKDA 671 Query: 296 ------------QQTTQEHVWP--RLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLD 340 ++ P + L ++K + + VR VGL V+ LD Sbjct: 672 EEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVSKLD 731 Query: 341 PQM 343 Sbjct: 732 SAD 734 >UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT23_PEDHD Length = 385 Score = 360 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 113/350 (32%), Positives = 187/350 (53%), Gaps = 7/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + IIH+D+D FF +VE++ N L P+ +GG + RGV+++ +Y ARK+GV SAMP+ + Sbjct: 5 KHIIHMDLDSFFVSVEIKKNSKLAGKPVIVGGLSD-RGVVTSCSYEARKYGVHSAMPSRL 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH + G D Y E S + EI + +E S+DE Y+D+T +G Sbjct: 64 ARQLCPHAEFVRGNMDDYSEHSRMVTEILQQKVPVLEKASIDEHYIDMTGMERFYGC-MK 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A+E+++ +F E L S G++ K ++KIA++ KPNG + E+P+FL L + KI Sbjct: 123 FARELKEQVFKESGLPVSFGLSVNKTVSKIATNECKPNGALQVEQLEIPSFLNPLSIKKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+G + KL MG+R + + K G G LW+++ GID V R +K Sbjct: 183 PGLGAATFLKLSEMGVRKIHTFAQIPQQQVYKVLGNNGLSLWQKAHGIDHTPVIPYREQK 242 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ++T D +++ +I + EL L K + L A + +++ +F+ TQ+ Sbjct: 243 SISKQQTFESDSIDFTQIRQLITGMVIELAYELRKQQK--LTACVTIVIRYSNFETITQQ 300 Query: 302 HVWP-RLNKADLIATARKTWDERRGGRG-VRLVGLHVTLLDPQMERQLVL 349 P LI A++ ++ R +RLVG+ ++ L Q+ L Sbjct: 301 CRIPYTALDDTLIVKAKELFERAYTRRMLIRLVGIKLSALV-NGYEQIDL 349 >UniRef50_C3Y6K1 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3Y6K1_BRAFL Length = 1191 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 116/407 (28%), Positives = 183/407 (44%), Gaps = 67/407 (16%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR---------------------- 38 ++ ++H+DMDCFF +V +R++P LR P+A+ S+ + Sbjct: 378 IKVVMHLDMDCFFVSVGLRNHPNLRGKPVAVTHSKGKGHEQKIRPGMDPEYERAYWEKRA 437 Query: 39 ---------------------------GVISTANYPARKFGVRSAMPTGMALKLCPHLTL 71 I++ +Y ARK GV++ M G ALKLCP L Sbjct: 438 PHRHSITDKTEDNATRGNAQRDTYMSFSEIASCSYEARKAGVKNGMFMGPALKLCPDLKT 497 Query: 72 LPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLIAQEIRQTI 130 +P F+ YKE + + I + YT IE +S DEA++DVTD + G + +A +R+ I Sbjct: 498 IPYDFEGYKEVAQEMYGILASYTHEIEAVSCDEAFVDVTDILADTGATPDDLATVLRKEI 557 Query: 131 FNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAA 190 + Q AS G+A LA++A+ KPNGQF + P EV F+ + ++PGVG+ + Sbjct: 558 LEKTQCPASVGLASSVLLARMATKRAKPNGQFYLPPEEVLDFVSPQTVRELPGVGRSLES 617 Query: 191 KLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTM 249 +L+ MG+ TCGD+QK L L + FG K G+ L+ +G D+R + ER RKSV E Sbjct: 618 RLKVMGVVTCGDLQKVTLPTLQREFGPKTGQALYRSCRGQDDRQLKVERERKSVSAEINY 677 Query: 250 AEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF-------------Q 296 +E E + L E++RRL K V + D Sbjct: 678 GIRFTKDTEAETFMYNLAEEVQRRLQKAGLKGKTVTLKVMARKADAPVEPSKFMGHGICD 737 Query: 297 QTTQEHV--WPRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLD 340 ++ + + A + + R +G+ +T L Sbjct: 738 SLSKSSTLGLATDDHKVIGKEAWNILCQMKLLPSDNRGLGIQITRLV 784 >UniRef50_B3WC63 DNA-damage-inducible protein P n=8 Tax=Lactobacillus RepID=B3WC63_LACCB Length = 367 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 124/358 (34%), Positives = 184/358 (51%), Gaps = 12/358 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMP 58 RKIIH+DMD F+A++EMRDNP LR + I +GV++TANY AR++GV SAMP Sbjct: 14 RKIIHLDMDAFYASIEMRDNPQLRSKALVIARDPRTTGGKGVVTTANYVARRYGVHSAMP 73 Query: 59 TGMALKLCPH--LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 AL+L P L F YK S I +F + T IEP++ DEAYLDVT + Sbjct: 74 ANEALQLVPRSKLVFKSPDFPKYKAVSAQIHALFHQVTDLIEPVAFDEAYLDVT-ANKMF 132 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 S +A ++ I QLT+S G++ KF+AK ASD NKP G+ ++ P + FL L Sbjct: 133 PSTIALALWLQDQISQATQLTSSIGISYNKFIAKQASDYNKPVGRTLVLPEQALLFLDRL 192 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P+ + GVGK + KL +G+ ++ LL+ FGK G +L++ ++G+D R V + Sbjct: 193 PIKQFRGVGKKTLPKLTDLGVTDGKSLRALSQDDLLRMFGKMGFVLYQHARGVDNRPV-A 251 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R KS+G ERT + + + L + L + +K++ DF Sbjct: 252 VRTAKSIGKERTYGTPLTDAEAVQTQLHNLAGMVVTSLNQKAMHG--KTVVLKVRDVDFI 309 Query: 297 QTTQEHVWPRLNKAD--LIATARKTWDERR-GGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ + + + A + W +RL+G+ VT LDP+ L L L Sbjct: 310 TQTKRLTQDHYFEGEQAIFDAAWQLWGSVAMSNLAIRLLGITVTGLDPKQYENLDLPL 367 >UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutylicum RepID=DPO4_CLOAB Length = 396 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 102/358 (28%), Positives = 179/358 (50%), Gaps = 13/358 (3%) Query: 2 RKIIHVDMDCFFAA---VEMRDNPA---LRDIPIAIGGS-RERRGVISTANYPARKFGVR 54 + I HVD++ F + VE N +R +P IGG + R GV+ + PA+K+G+ Sbjct: 3 KVIFHVDVNSAFLSWTAVEKLKNGEDIDIRKVPSVIGGDEKSRHGVVLAKSTPAKKYGIV 62 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + A K CP++ + P RFD Y++AS + + R+T IE S+DE ++DVT+ + Sbjct: 63 TGESLYHARKKCPNILVFPPRFDTYRKASESMMNLLKRFTPHIEKYSIDECFMDVTNDLR 122 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 S A I++ I NEL T + G++ + LAK+AS++NKP+ + E+ + Sbjct: 123 GMES-VEFASIIKERIKNELGFTVNVGISTNRLLAKMASELNKPDKINTLYKHEIKDKMW 181 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP+ ++ VGK KL + ++T G++ K D+ +L +F G ++WE + GID D+ Sbjct: 182 PLPVGELFMVGKSMKRKLNELHIKTIGELAKYDVNILKAKFKSHGNMVWEYANGIDNSDI 241 Query: 235 -NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 K + E T++ D+ + I+ L L +RL V ++ Sbjct: 242 SRYRDEIKCISNETTLSMDLTDTEKIHKILVTLCENLGQRLRDANK--YCTSISVNIRTS 299 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 DF+ + + + D+I A K ++E G +RL+G+ ++ L Q+ + Sbjct: 300 DFRNYSHQKKLKNAVSSTRDIILYADKIFNEMWGREPIRLLGVQLSGLCSGSSVQISM 357 >UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3H3_ERYRH Length = 406 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 101/354 (28%), Positives = 176/354 (49%), Gaps = 8/354 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R I+H D+D FA +E+ NP+L D+P+ +GG +R G++ N A+ GV++A Sbjct: 4 RYILHCDIDYCFAQIEIMKNPSLADVPMCVGGDESKRHGIVLARNPIAKAKGVKTAETLN 63 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L ++P FD Y SN +++I+ YT ++E +DEA++D++DS+ G Sbjct: 64 EARRKCPGLVIVPPSFDDYLTISNQVKDIYREYTDKVESFGIDEAWVDISDSLLLFGKPG 123 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+ I E+ LT S G++ K AK+ SD+NKP+G ++ + V + + LP+ Sbjct: 124 DIATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDGLTILMESHVKSMIWPLPVQD 183 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER-L 239 + VG + L MG+RT GD+ D L GK G +L + G D +VN Sbjct: 184 LLYVGPSTQKSLNKMGIRTIGDLACADENQLHTHIGKMGSLLKSFANGDDTSEVNPHTDP 243 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 KSVG T +D+ E ++ L + R ++ + R ++ + + + Sbjct: 244 AKSVGNGMTTPQDLVSIEEVRRVLFVLAESVSSRCRNIEKKGSVLRIC--IRNNQLETLS 301 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQME-RQLVL 349 ++ P ++ + + + +R + + ++ L + QL L Sbjct: 302 RQKKLNQPTNTVDQIVNESLFLIERYWDQKQPLRSITITLSDLVSTTQPIQLSL 355 >UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8L3_9ACTN Length = 432 Score = 357 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 177/353 (50%), Gaps = 10/353 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I +D+D FFA+VE D+P R P+ +GGS E+RGV+ST +Y AR +GVRSAM + A Sbjct: 23 IGLMDLDAFFASVEQLDHPEWRGKPVIVGGSPEKRGVVSTCSYEARVYGVRSAMSSAQAK 82 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +LCP PG FD Y+E S + I + T ++ +S+DEA+ D++ C IA Sbjct: 83 RLCPEAIWTPGHFDRYREMSARVMAILADETPFVDRVSIDEAFFDISPGRFCDEHPIQIA 142 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 Q I + + +EL +T S G+ K +AKIAS+ +KP G ++TP FL LP+ + G Sbjct: 143 QRISRRV-SELGITCSIGLGRNKTVAKIASERDKPRGLTIVTPGTEHGFLAPLPVRAMSG 201 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR--- 240 +G + + L +G+RT G + + +L FG ++ R+ G++ +V + Sbjct: 202 IGAAAESALARVGIRTLGQLAEASDGLLSPIFGINTELVRRRAAGLEVSEVRAIDAPDDV 261 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS+ ERT A D+ S+ +A I+ L + + L +KLK+ + T Sbjct: 262 KSISNERTFAHDLTDPSDVKAAIQLLSESVGA--RLRRRGLAGRTVTLKLKYSFGEGRTI 319 Query: 301 EHVWPRLNKAD--LIATARKTWDERR-GGRGVRLVGLHVTLLDPQ-MERQLVL 349 + + A AR G +RL G+ V+ P Q L Sbjct: 320 QRKLAHATDDENVFGAVARDLLASIWTEGMHIRLAGVGVSDFGPDPHGIQTDL 372 >UniRef50_C8V695 Deoxycytidyl transferase (Eurofung) n=2 Tax=Emericella nidulans RepID=C8V695_EMENI Length = 1139 Score = 357 bits (916), Expect = 5e-97, Method: Composition-based stats. Identities = 107/390 (27%), Positives = 155/390 (39%), Gaps = 41/390 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD DCFFAAV +P L P+AI I++ NY AR GV++ M Sbjct: 340 RYIMHVDFDCFFAAVSTLKHPELEGKPVAIAHGTGTGSEIASCNYVARASGVKNGMWMKG 399 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT----------- 110 AL+ CP L +LP F AY+EAS ++ +S+DEA +D+T Sbjct: 400 ALQACPDLRVLPYDFPAYEEASRKFYRAILGIDGLVQSVSIDEALVDITTICLEAGGSEG 459 Query: 111 ------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A +A+++R I E S G+ AK+A KP GQF + Sbjct: 460 KGVSEGSIYREQAKADEVAEQLRAAIKRETGCAVSVGIGGNILQAKVALRKAKPAGQFQL 519 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ LP+ +PGVG +AKLE +G++ D++ L G K G L Sbjct: 520 KPDAVLDFIGELPVQNLPGVGYSLSAKLEDLGVKIVKDIRDLSREKLSSSLGPKTGAKLA 579 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + ++GID +V +E RKSV E + E + L EL RRL + Sbjct: 580 DYARGIDRTEVGNEVTRKSVSAEVNWGIRFVTQDQAEDFMRSLCEELHRRLVENLMKGQQ 639 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDER-RGGR 327 V + D + + L A Sbjct: 640 LTLKVMRRALDAPLEAVKHLGHGKCDVFNKSVILGIATNAADVLGKEAIAMLRSLAISPG 699 Query: 328 GVRLVGLHVTLLDP-------QMERQLVLG 350 +R +G+ +T L+P Q L Sbjct: 700 DLRGLGVQMTKLEPLKSTSEKSDGSQQQLA 729 >UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E013_METI4 Length = 365 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 114/345 (33%), Positives = 175/345 (50%), Gaps = 10/345 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAI-GGSRERRGVISTANYPARKFGVRSAMPTGMA 62 VD+D F+ +VE +P R++P+A+ GS RGVI TA+Y ARK+GV+S MP A Sbjct: 27 FFFVDLDAFYVSVERLRHPEYREMPMAVYTGSLNGRGVIMTASYEARKYGVKSGMPIRQA 86 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L CP + L+ Y+E SN + + R++ RIE +S+DE L V S+ Sbjct: 87 LYHCPGIMLVAAHPSLYEEYSNSVYSLLKRFSERIERVSIDENCLVVPSSI----DPETT 142 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A I+ I ++ L +S GV K +AK+A D+ KP G VI P AFL LP+ KIP Sbjct: 143 ATAIQAAIGAKIGLPSSIGVGSNKLIAKMACDLAKPQGIRVIPPGYEKAFLAPLPVEKIP 202 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVG + AMG+ T D+ K D L ++FGK G + +QGID+ + ER +S Sbjct: 203 GVGPATLKIFHAMGIVTIDDLSKVDEQTLREKFGKRGAYFYNAAQGIDKSPLQLERTPRS 262 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 + E T DI ++S + ++ L +L L K L+ +KL++ DF ++ Sbjct: 263 LSREITFDRDIKNFSILQRVLVSLSRDLADSLR--KEKLVAKTVFLKLRYSDFSTNLRQF 320 Query: 303 VW--PRLNKADLIATARKTWDE-RRGGRGVRLVGLHVTLLDPQME 344 P + ++ + + +RL+GL + L + Sbjct: 321 SLSSPTDDPTEIATCGLLLLKRNIKKEKALRLIGLGLRNLTAKTG 365 >UniRef50_UPI000180C22E PREDICTED: similar to polymerase (DNA directed), kappa n=1 Tax=Ciona intestinalis RepID=UPI000180C22E Length = 706 Score = 356 bits (914), Expect = 8e-97, Method: Composition-based stats. Identities = 128/383 (33%), Positives = 190/383 (49%), Gaps = 52/383 (13%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IIH+DMD F+AAVE RD P L+ P+A+GG ++ST+NY ARK+GVR+AMP + Sbjct: 106 RTIIHIDMDAFYAAVEERDRPELKQKPMAVGGMD----MLSTSNYVARKYGVRAAMPGFI 161 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------- 114 A KLCP+L ++P FD Y+E S +EIFS Y +SLDEA+LD+TD + Sbjct: 162 AKKLCPNLIIVPTNFDKYREVSKETQEIFSEYDENFCGMSLDEAFLDITDHLQKRLIYDQ 221 Query: 115 ----------------------------CHGSATLIAQEIRQTIFNELQLTASAGVAPVK 146 SA +A+EIR I + LTASAG+AP Sbjct: 222 EERTFHYHPTLAPTTTSEDTDDKKSSETFGFSAEEVAKEIRFRIQQKTLLTASAGIAPNT 281 Query: 147 FLAKIASDMNKPNGQFVITP--AEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQ 204 LAKI SD+NKPNGQ P E+ F++ P+ K+ G+GKV+ L ++G++ CGD+ Sbjct: 282 MLAKIGSDLNKPNGQTFFAPNRDEIMKFIKDFPVRKVNGIGKVTEQLLSSLGVQKCGDIY 341 Query: 205 KCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAII 263 + L+ F + G + + RKS+ ERT + I + E A + Sbjct: 342 EM-RAELMLLFSATSCSFFFRMCLGCSSNILEPDGERKSISTERTFST-ISNRDELFAKL 399 Query: 264 ERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW--PRLNKADLIATARKTWD 321 + L L + K ++ +K K DFQ T+ P N + A++ Sbjct: 400 DELCHSLAADMK--KQNVQGKTLTLKTKNVDFQLHTRSKTINVPMTNYQTIFPVAQELLK 457 Query: 322 ERRGG----RGVRLVGLHVTLLD 340 + +RL+G+ ++ L+ Sbjct: 458 QEILNANNKLSLRLMGVGLSKLE 480 >UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAW2_HELMI Length = 409 Score = 356 bits (914), Expect = 8e-97, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 170/356 (47%), Gaps = 11/356 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTGM 61 ++ DM+ F+A+VEM NP LR P+ + G ERR G+I A+ A++ GV++AM G Sbjct: 6 TVLLADMNSFYASVEMAHNPTLRGQPVLVCGDPERRHGIILAASREAKRRGVKTAMTVGE 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +CP + R Y E S I++I + +EP S+DE ++DV + H G A Sbjct: 66 ARAICPDAVCVRPRMSLYLEVSWQIQQIARTLSPLVEPYSVDELFIDVRGAEHIWGDAVE 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDM-NK--PNGQFVITPAEVPAFLQTLPL 178 A RQ ++ +++ S GV P KFL+K+A D+ K P+G + +V A L LP+ Sbjct: 126 AAGIFRQRVWEAVKVPCSVGVGPNKFLSKMACDVEAKKSPSGVALWRVDDVEAKLHPLPI 185 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE- 237 K+ VG MGL T GD+ + L++RFG G + + G D V + Sbjct: 186 GKMFMVGSRMERHFRNMGLLTIGDLAHYPVDYLMRRFGLRGAVYHNLAWGRDGSPVRPDS 245 Query: 238 -RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 KSVG T+ D HH + E ++ L E+ RR K+ V L+ D Sbjct: 246 LEQTKSVGHSVTLPRDYHHSDDIELVLLELTDEVCRRARKLGK--AGRTVSVGLRAYDLT 303 Query: 297 Q-TTQEHVWPRLNKAD--LIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 + ++ P + + A+ + GR VR V + ++ L+ Q L Sbjct: 304 RGFYRQTTLPSPSNLSGPVFEKAQLLFRRHWDGRPVRTVTVDLSGLEEDGTLQQEL 359 >UniRef50_Q9UBZ9 DNA repair protein REV1 n=27 Tax=Tetrapoda RepID=REV1_HUMAN Length = 1251 Score = 356 bits (914), Expect = 9e-97, Method: Composition-based stats. Identities = 109/410 (26%), Positives = 178/410 (43%), Gaps = 70/410 (17%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE--------------------------- 36 I+HVDMDCFF +V +R+ P L+ P+A+ +R Sbjct: 419 IMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGK 478 Query: 37 -------------------------RRGVISTANYPARKFGVRSAMPTGMALKLCPHLTL 71 R I++ +Y AR+ G+++ M G A +LCP+L Sbjct: 479 AADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQA 538 Query: 72 LPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTI 130 +P F AYKE + + E + YT IE +S DEA +D+T+ + + A +R I Sbjct: 539 VPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEI 598 Query: 131 FNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAA 190 ++ + AS G+ LA++A+ KP+GQ+ + P EV F++ + +PGVG + Sbjct: 599 KDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMES 658 Query: 191 KLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTM 249 KL ++G++TCGD+Q + L K FG K G++L+ +G+D+R V +E+ RKSV E Sbjct: 659 KLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINY 718 Query: 250 AEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK-------FDDF------Q 296 E EA + L E++RRL + ++ F Sbjct: 719 GIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICD 778 Query: 297 QTTQEHVWP--RLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQM 343 + N + + + +R VG+HV L P Sbjct: 779 NIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLVPTN 828 >UniRef50_A2QTI4 Contig An09c0050, complete genome n=9 Tax=Eurotiomycetidae RepID=A2QTI4_ASPNC Length = 1165 Score = 355 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 109/390 (27%), Positives = 157/390 (40%), Gaps = 42/390 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD DCFFAAV P L+ P+A+ I++ NY AR G+++ M Sbjct: 372 RYIMHVDFDCFFAAVSTLKRPELQGKPVAVAHGTGSGSEIASCNYEARAHGIKNGMWMKG 431 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT----------- 110 AL+ CP L ++P F AY+EAS ++ +S+DEA +D+T Sbjct: 432 ALQTCPELKVVPYDFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDITTQCLEAGGSDG 491 Query: 111 ------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IA E+R T+ E S G+ LAK+A KP GQF + Sbjct: 492 RGISEGSLYREQARADEIADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQL 551 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ L + +PGVG KLE +G++ DV+ L G K G +W Sbjct: 552 KPDAVLDFIGNLTVQDLPGVGYSLGTKLEDLGVKLVKDVRDLTRDRLTTSLGPKTGVKIW 611 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 E ++GID +V +E LRKSV E + ++ E + L EL RRL + Sbjct: 612 EYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQTQAEDFVRSLCQELHRRLVENLVKGQQ 671 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDER-RGGR 327 V + D + V L A Sbjct: 672 LTLKVMRRALDAPLEPVKHLGHGKCDVFNKSVVLGVATDAADILGKEAVAMLRSMNLSPG 731 Query: 328 GVRLVGLHVTLLDP--------QMERQLVL 349 +R +G+ +T L +RQL Sbjct: 732 DLRGLGVQMTKLQHLQTSSPSKSGQRQLNF 761 >UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5S0_SPHTD Length = 394 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 119/338 (35%), Positives = 176/338 (52%), Gaps = 8/338 (2%) Query: 17 EMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRF 76 E+ P LR P+ +GG RGV++ A+Y AR +GVRSAMP A++LCPH LPG Sbjct: 24 EILRRPELRGKPVIVGGRPGGRGVVAAASYEARAYGVRSAMPIAQAVRLCPHGVFLPGDH 83 Query: 77 DAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQL 136 Y+E S R I R++ +E +S+DEAYLD++ S G A+ I++ + EL L Sbjct: 84 AYYRELSGRFRAILERFSPLVEMVSVDEAYLDLSHSERSVGPPLEAARAIKRQVREELGL 143 Query: 137 TASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMG 196 T S GVA + +AKIASD++KP+G +I P L LP+ ++PG+G S +L+ +G Sbjct: 144 TVSLGVATSRLVAKIASDLDKPDGLRLIEPGAEAVTLAPLPVERMPGIGPKSVERLQRIG 203 Query: 197 LRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR-KSVGVERTMAEDIHH 255 + T G + + L FG+ + R++GID R VN ER KS+G ERT +D+ Sbjct: 204 VTTLGGLARMPAAALRPIFGRRADEVIARARGIDPRPVNPEREPAKSIGRERTFGQDLTD 263 Query: 256 WSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW--PRLNKADLI 313 E E + L R L + L VKL++ DF+ ++ P + ++ Sbjct: 264 RHEIERALYHLAERTGRDLR--REGLQGRVVAVKLRYSDFETVGRQRRLPRPTDDHQEIA 321 Query: 314 ATARKTWDERRGGR--GVRLVGLHVTLLDPQMERQLVL 349 A R VRL+G+ V L P QL + Sbjct: 322 EVAMDLVARLLEERQAPVRLLGVRVAGLGPAA-IQLTM 358 >UniRef50_B0MAH2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAH2_9FIRM Length = 402 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 179/360 (49%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVE-------MRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGV 53 R I H+D++ + + E +D LR++P IGG RRG++ A+ PA+K G+ Sbjct: 6 RVIFHIDVNSAYLSWEAVYGISVRKDEVDLREVPSIIGGDESKRRGIVLAASIPAKKKGI 65 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 R+A AL CP L + P Y + S + +++ +E S+DEA+LD+T++V Sbjct: 66 RTAETVREALNKCPDLIIRPPCHGMYDKFSKAFLKEALKFSPVLEKFSIDEAFLDMTETV 125 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 + S A ++ I+ +L T + GVAP K LAK+ASD KPN + EVP + Sbjct: 126 GQYKSPYEAACLLKDRIYEKLGFTVNIGVAPNKLLAKMASDFEKPNKVHTLFREEVPNKM 185 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ + VG + KL +G+RT G++ + +L G K G ++E + GID Sbjct: 186 WPLPVENLLFVGPATKKKLHNLGIRTIGELAHINPELLKSHIGNKHGIQIYEYANGIDRA 245 Query: 233 DVNSER-LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 V +++ K G T+ DI E + ++ L + RL + + + V++K Sbjct: 246 PVEAQQADSKGYGNSITLPSDIDSLEEADTVVLSLAETVASRLRADR--VKASCITVEIK 303 Query: 292 FDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F++++ + P +++ A++ + E+ G VRL+G+ + + + Q+ Sbjct: 304 DCQFRRSSHQKKLFAPTDITNEIVQAAKELYREKFRGTSVRLIGVRASDITKEEFAQMDF 363 >UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A0M5X6_GRAFK Length = 406 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 175/350 (50%), Gaps = 7/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + IIH+D+D FF + E R++P L P+ +GG + RGV++ +Y R FGV S MP + Sbjct: 5 KSIIHLDLDTFFVSAERREHPELNKKPVIVGGLGD-RGVVAACSYETRNFGVHSGMPMKV 63 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP T++ G Y + S+ + E+ E S+DE Y D+T G Sbjct: 64 ARQLCPAATVIKGNASIYTKFSHEVTEVIRSKVPSFEKASVDEFYADLTGMDRFFG-INQ 122 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 A+E++Q+I E +L S G++ K ++KIA+ KP Q +I P FL LP+ KI Sbjct: 123 FAKELQQSILKETRLPISFGLSQNKIVSKIATGEGKPYAQKIIDPGTEKNFLAPLPVNKI 182 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 P VG + KL +G+R +QK + +L GK GR +W+R+ GID + RK Sbjct: 183 PMVGNKTFQKLLNLGIRRIETIQKMPVEVLESVLGKNGRTIWKRAHGIDNPPIIPFHERK 242 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+ ERT D A + + L +L + + L + V++++ DFQ +++ Sbjct: 243 SISTERTFNRDTIDMVRLHATLVAMAESLAYQLR--RGNKLTSNVSVRIRYSDFQTYSKQ 300 Query: 302 HVWPRLNKADL-IATARKTWDERRGGRG-VRLVGLHVTLLDPQMERQLVL 349 + + I + + + R +RL+G+ + L Q+ L Sbjct: 301 AKISYTSADHILIPKVEELFKQLYSRRMLIRLIGVRFSGLV-GGHYQINL 349 >UniRef50_D1BHR1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Actinomycetales RepID=D1BHR1_SANKS Length = 489 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 120/357 (33%), Positives = 181/357 (50%), Gaps = 11/357 (3%) Query: 1 MR---KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAM 57 MR I H+D D FFA+VE P+LR P+ +GG R V +TA+Y AR +G RSAM Sbjct: 1 MRARPTIAHLDADAFFASVEQHQRPSLRGRPVLVGGVGPRGVV-ATASYEARAYGARSAM 59 Query: 58 PTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG 117 P A ++CP T++ RFDAY S I E+ + ++E +S+DEA+ ++ Sbjct: 60 PMEQARRMCPTATVVVPRFDAYSAYSAQIMEVLREVSEQVEAISIDEAFAELDHLPGSSA 119 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 +A E R+ L+ S G+ K +AK+AS+ KP G V+ PA+ AFL LP Sbjct: 120 DLEALALEFRRRAHERTGLSVSLGLGRSKLVAKLASEAAKPGGVKVVDPADEDAFLLALP 179 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNS 236 + + GVG VSAA+L+ +G+RT D++ + L+ G+ G L+ ++G D+R V + Sbjct: 180 VRALWGVGPVSAARLDQLGVRTVEDLRAQPMDTLVMATGEAAGTNLYRIARGWDDRPVTT 239 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R RKS G E T +D+H A ++ + RRL + + VK++ F Sbjct: 240 VRERKSAGAEHTFDDDLHGRRAIAAALDGVTDSALRRL--DRHGVAARTVVVKVRVASFT 297 Query: 297 QTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ P + L AR+ D VRL+G+ L QL+L L Sbjct: 298 TITRSVTLSRPTSDVDALREAARRALDLAEVVEPVRLLGVSFHGLS--AHSQLMLPL 352 >UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidobacterium RepID=A1A051_BIFAA Length = 471 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 175/366 (47%), Gaps = 22/366 (6%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++H+DMD FFA++E+ +P D P+ IG R V+S ANY ARK+G+ SAM + A Sbjct: 50 TVLHIDMDAFFASLEVARHPEYADKPVIIGIGN--RSVVSAANYEARKYGINSAMASSRA 107 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIR-EIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 KLCP+ LP Y+E S I E+FSR T RIE +S+DE Y+DV+ ++ S Sbjct: 108 RKLCPNGVFLPVDIHYYREMSRRIFTEVFSRVTDRIEQVSVDECYMDVSGALLRWKSPRA 167 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I IR + +T S G+A K +AK+AS KP+G +I A F+Q +PL I Sbjct: 168 IGAWIRDQVARRYHITCSVGIAANKLVAKMASTNAKPDGMLMIPVARHAEFVQMMPLRGI 227 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG--KFGRILWERSQGIDERDVNSERL 239 PG+G +L A G+ + D+ K + L + G R L+ ++G+D+R V Sbjct: 228 PGIGPSLEKRLNAWGVDSVADLAKMSMESLEQATGSAISARGLYMAARGLDDRPVAPRAQ 287 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 KSVG ERT +D + +++ ++ L + L+ + VKL+F D T Sbjct: 288 GKSVGAERTFDKDTQDMRQVTSMLRWCCDDVAGTLR--RRGLMARKVMVKLRFPDLSYAT 345 Query: 300 QEHVW--PRLNKADLIATARKTW-----------DERRGGRGVRLVGLHVTLLDP--QME 344 + H P + L D R VRL G+ L Sbjct: 346 KGHTLDCPTDAASMLYPQCVALLLAMMGMPESSIDAISLTRPVRLAGMSAGGLVEAADAA 405 Query: 345 RQLVLG 350 QL L Sbjct: 406 VQLSLD 411 >UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q0AWD6_SYNWW Length = 419 Score = 352 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 103/356 (28%), Positives = 167/356 (46%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ F+A+VE P +R+ +A+ G R G++ NY A++ G+++ Sbjct: 3 RVILHSDLNNFYASVECLHRPEIRNKAVAVCGDPAARHGIVLAKNYLAKESGIQTGEVIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + CP L ++P + Y + S R I++ YT ++E LDEA+LDVT S+H GS Sbjct: 63 QAQQKCPELVVVPPNYPLYLKFSRLARSIYASYTDQVEAFGLDEAWLDVTGSIHIFGSGI 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A EIR+ I EL ++AS GV+ K AK+ SDM KP+ +I+ LP + Sbjct: 123 EMADEIRERIKLELGVSASVGVSYNKIFAKLGSDMKKPDATTIISKDNFKQTAWPLPASD 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN---SE 237 + VG+ + K G+ T GD+ + D ++L R GK+G +LW + G D V E Sbjct: 183 LLYVGRATCRKFARWGISTIGDIAESDPLVLKARLGKWGEVLWSFANGYDRSPVVAMGEE 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 + KSVG T D+ + + II L + RL + + ++ + Sbjct: 243 SIIKSVGNSITTPRDLENNEDVLLIIYALSESVAARLREH--GFKCRTVHIHVRDKNLFT 300 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQM-ERQLVL 349 + P D+ A + +R +G+ L QL L Sbjct: 301 FGVQGKLLRPGNISNDIAEKAMALFRSHYSWAHPIRSIGVRGCDLIAADSHEQLSL 356 >UniRef50_C3PHE2 DNA polymerase IV n=10 Tax=Corynebacterineae RepID=C3PHE2_CORA7 Length = 492 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 159/348 (45%), Gaps = 8/348 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H+DMD FFA+VE P LR P+ +GG RGV++ A+Y AR +G SAMP Sbjct: 14 RWVLHIDMDAFFASVEQLTRPTLRGRPVLVGG-TSGRGVVAGASYEARAYGAHSAMPMFR 72 Query: 62 ALKLCP-HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSA 119 A +L ++ R Y AS + I +++ IE LS+DEA+++ + Sbjct: 73 AQQLVGYRAVVVQPRRAVYSAASRRVFGIIAQHAGVIEQLSIDEAFMEPAALLGATPAEV 132 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 ++ +R+ I E L +S G K AKIAS KP+G FV+ + LP+ Sbjct: 133 REWSENLRRVIRTETGLPSSIGAGAGKQSAKIASGEAKPDGTFVVPQERFKELIHPLPVG 192 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNSER 238 K+ G G V+ KL A+G+ T G + + G G LWE +QGIDER V Sbjct: 193 KLWGAGPVTQQKLAAIGVETIGQLAAMSRKEVEISLGGVVGVQLWELAQGIDERPVAPRA 252 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 + K + E T D+ +E +A + R RL K VKL+ DF Sbjct: 253 IAKQISTEFTYPTDLRTAAEVDAALIRAAHGAHSRLLKDGRG--ARTVTVKLRMADFHIE 310 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGR--GVRLVGLHVTLLDPQME 344 ++ + A+ R +RLVG+ + L+ + Sbjct: 311 SRSATLSYATDDLKVLEAKALSLARYPEELGPIRLVGVSYSGLEEARQ 358 >UniRef50_A9BNM1 DNA-directed DNA polymerase n=34 Tax=Betaproteobacteria RepID=A9BNM1_DELAS Length = 437 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 127/379 (33%), Positives = 188/379 (49%), Gaps = 38/379 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE------------------------- 36 R+I H+DMD F+A+VE+ P L+ +P+ IGG R Sbjct: 28 RRIAHLDMDAFYASVELLRYPQLKGLPVVIGGGRRAHDEALDARYAGRLHEIPVDEFSRL 87 Query: 37 ----RRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSR 92 RGVI+TA YPAR+FGV SAM A +LCP LLP F + S +EI Sbjct: 88 KDYVGRGVITTATYPARQFGVGSAMGMMKAARLCPQAILLPVDFAEVRRFSRMFKEIIVS 147 Query: 93 YTSRIEPLSLDEAYLDVTDSVHCHGSA-TLIAQEIRQTIFNELQLTASAGVAPVKFLAKI 151 +E +DE Y+D TD ++A+ I++TI + LT S GVAP K LAK+ Sbjct: 148 IAPLMEDRGVDEVYIDFTDVPGGQREGGRVLARLIQKTITDATGLTCSIGVAPNKLLAKM 207 Query: 152 ASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVML 211 AS+ NKPNG ++ P ++ A + L KI G+G + AKL+++G++T G++ K L L Sbjct: 208 ASEFNKPNGISIVQPDDLQAVIWPLACRKINGIGPKADAKLQSLGIQTIGELAKQSLPQL 267 Query: 212 LKRFGKF-GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIH---HWSECEAIIERLY 267 ++ FG+ G L S G DER V + S+ E T D+H +E AI L Sbjct: 268 VQWFGRAYGNWLHGVSWGRDERPVVTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLC 327 Query: 268 PELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV--WPRLNKADLIATARKTWDERRG 325 L + L + + G+KL++DDF+ T++H P + A L A + Sbjct: 328 ERLAQDLQ--RKGYMGRTVGIKLRYDDFKTATRDHTLELPMADAATLRRAAGQCLKRVPL 385 Query: 326 GRGVRLVGLHVTLLDPQME 344 + +RL+G+ V L + Sbjct: 386 AKRLRLLGVRVGNLVRTAD 404 >UniRef50_Q47E66 UMUC-like DNA-repair protein n=2 Tax=Betaproteobacteria RepID=Q47E66_DECAR Length = 387 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 108/379 (28%), Positives = 177/379 (46%), Gaps = 36/379 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE--------------------RRGVI 41 R+I H+DMD FFA+VE+ + P LR P+ +GG RGV+ Sbjct: 12 RRIAHLDMDAFFASVELLNYPELRGQPVVVGGRNVNQPISQPDGTKRFGRLREYVGRGVV 71 Query: 42 STANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLS 101 +T+ Y AR FGV S M + ++ P LLP FDAY S + + IE Sbjct: 72 TTSTYEARAFGVFSGMGLMKSAEMAPGTILLPANFDAYLNYSRRFKAAVATIAPLIEDRG 131 Query: 102 LDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQ 161 +DE Y+D++D +A+ I+Q +F+ LT S G+ P K L+KI SD+ KP+G Sbjct: 132 IDEIYIDLSDIDEESLP---LARRIKQAVFDATGLTCSIGITPNKLLSKICSDLQKPDGI 188 Query: 162 FVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGR 220 ++ A++ + + L KI G+G + +LE +G++T G + + +LL FG G+ Sbjct: 189 TILGIADIESRIWPLAAKKINGIGPKANERLEKLGIQTIGQLAATPVELLLNHFGRSTGQ 248 Query: 221 ILWERSQGIDERDVNSERLRKSVGVERTMAEDIH---HWSECEAIIERLYPELERRLAKV 277 + + + G D+R V + R KS+ E T D+H SE I + + L Sbjct: 249 WMHQVAHGRDDRPVKTSRETKSISRESTFQRDLHAKQDRSELSEIFTGICLRVADDLK-- 306 Query: 278 KPDLLIARQGVKLKFDDFQQTTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLH 335 + L+ G+K+++ DFQ T++ + + A + + +RL+G+ Sbjct: 307 RKGLVAKTIGIKVRYADFQAVTRDFTLDLATDDGMTIRRAAGECLKRVPLEKRIRLLGVR 366 Query: 336 VTLLDPQMER-----QLVL 349 + L Q L Sbjct: 367 ASALASASTLADLPAQQSL 385 >UniRef50_D2A3T9 Putative uncharacterized protein GLEAN_14950 n=1 Tax=Tribolium castaneum RepID=D2A3T9_TRICA Length = 825 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 108/399 (27%), Positives = 176/399 (44%), Gaps = 51/399 (12%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGG----------------------------- 33 ++H+DMDCFF +V +R P LR +P+A+ Sbjct: 209 VVMHIDMDCFFVSVGLRTRPELRGLPVAVTHARRAQLNPNKEREETVTLNMDRMPEGVEL 268 Query: 34 ----SRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREI 89 R +++ +Y ARK GV++ M G A KLCP + +P F+ YKE S + + Sbjct: 269 RMIDGRSSMSEVASCSYEARKCGVKNGMFLGAAAKLCPQIKTIPYDFEGYKEVSMVLYKT 328 Query: 90 FSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLIAQEIRQTIFNELQLTASAGVAPVKFL 148 + YT IE +S DE Y++V+D + + S A IR I S G + Sbjct: 329 LASYTLNIEAVSCDEMYVEVSDLLKSYDLSVEDWANHIRDEIKTATGCPCSTGFGSNRLQ 388 Query: 149 AKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDL 208 A++A+ KP+G + + P +V ++L + LA +PGVG + +KL+++GL TCGDVQ L Sbjct: 389 ARLATKKAKPDGSYYLKPEDVESYLAEIALADLPGVGYATLSKLKSLGLETCGDVQVASL 448 Query: 209 VMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLY 267 +L + G K G L E+++GID + +N RKSV E +EC +E L Sbjct: 449 GVLQRELGAKMGETLLEQAKGIDRKPLNYTHERKSVSAEINYGIRFKTINECYNFLESLG 508 Query: 268 PELERRLAKVKPDLLIARQGVKLKFDDF-------------QQTTQEHVWPRL--NKADL 312 E+ RL ++K + ++ D ++ + L Sbjct: 509 NEVWSRLNEIKMRAKTVTLKLMIRAADAPLETAKFLGHGLCDSVSKSQTLAHHISDVKIL 568 Query: 313 IATARKTWDERRGGRG-VRLVGLHVTLLDPQMERQLVLG 350 R +D+ +R +G+ +T L+ L Sbjct: 569 HREVRTLYDKMNVNYAELRGLGVQLTKLEKLAPINPTLS 607 >UniRef50_B2VS10 DNA polymerase IV n=3 Tax=Pleosporineae RepID=B2VS10_PYRTR Length = 878 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 99/373 (26%), Positives = 160/373 (42%), Gaps = 34/373 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV ++ +P +D P + + I++ NYPAR +GV++ M Sbjct: 388 RYILHVDFDSFFAAVSLKKHPEYKDKPAVVAHGQGSGSEIASCNYPARTYGVKNGMWMKR 447 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 A +LCP L +LP F AY+E S ++ ++ +S+DEA +DV++ Sbjct: 448 AQELCPDLKILPYDFPAYEETSRAFYDVILSTGGLVQSVSIDEALVDVSNLCISVGGSDG 507 Query: 114 ---------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IA +R + + S G+ LAK+ KP GQ+ I Sbjct: 508 KAHSEGSVYREQAKANEIALNLRDEVRSRTGCNVSVGIGGNILLAKVGLRRAKPAGQYQI 567 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P E F+ L + +PGV KLE +G++ D+++ L++ G K G L+ Sbjct: 568 KPEEALDFIGQLQVQDLPGVAWSIGGKLEGLGIKLVKDIRELTKEKLIQTLGPKTGEKLY 627 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 E S+GID ++V + +RKSV E + + + I L EL++RL K K Sbjct: 628 EYSRGIDRQEVGEQVVRKSVSAEVNWGVRFENQEQADEFIASLCGELQKRLRKEKVKGKQ 687 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDERRG-GR 327 V + D + + + L A Sbjct: 688 FTMKVMRRSPDAPLDPSKHLGHGKCDTHNKSILLGVATNSSEVLTKEALAIVRGFAFTPG 747 Query: 328 GVRLVGLHVTLLD 340 +R +G+ +T L+ Sbjct: 748 ELRGIGIQMTKLE 760 >UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_9FIRM Length = 411 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 106/356 (29%), Positives = 171/356 (48%), Gaps = 11/356 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R I+H DM+ F+A+VE NP L++ P+A+ GS E R G++ NY A+ FGV + Sbjct: 3 RVILHCDMNNFYASVECMLNPELKNKPVAVCGSVEERHGIVLAKNYAAKAFGVSTGEAIW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A + C L ++ ++ Y + S REI+ RYT +IEP +DE +LDVT S C G+ Sbjct: 63 QAKQKCQDLVIVEPHYEQYMKFSKLAREIYGRYTDQIEPYGMDECWLDVTGS-GCMGTGF 121 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EIR+T+ EL LT SAGV+ K AK+ SDM KP+ I + P + Sbjct: 122 EIADEIRRTVKFELGLTISAGVSFNKIFAKLGSDMKKPDAITCIEADSFREKIWCHPASD 181 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + GVG+ + L + G+ T G++ L R GK G ++ + + G+D+ V + Sbjct: 182 LLGVGRATEKVLSSYGIHTIGELAATSDDFLKCRLGKNGLVIKKYANGLDDSPVMRSDYV 241 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KS+G T +D+ + +E ++ L E+ +L K + ++ ++ Sbjct: 242 SPVKSIGHGITTMQDLENNAEVWCVMLELVQEIGTKLRAHKKK--AGGIAISIRNNELYT 299 Query: 298 TTQEHV--WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLL-DPQMERQLVL 349 + P + L TA + + +R V + L + Q L Sbjct: 300 KEWQCRIGIPTQSPTYLAKTAFALFAKNYQWEHPIRSVTVRAINLFEEDCPIQYDL 355 >UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBQ9_9FIRM Length = 399 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 173/350 (49%), Gaps = 9/350 (2%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPT 59 +R I+H DM+ +A++E + NP L++ +A+ G R G+I + A+ GV++ Sbjct: 2 LRTILHSDMNSCYASIEAKLNPKLKNKAMAVCGDPRNRHGIILAKSQEAKIMGVKTGEAI 61 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A CP+L L+P ++ Y E S R+I+ YT+R+EP LDE +LDV++S+ GS Sbjct: 62 WQAKIKCPNLILVPPHYEKYLEFSRKARKIYYSYTNRVEPFGLDECWLDVSESLKLFGSG 121 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 IA +IR+ + EL +T S GV+ K AK+ SD+ KP+ +I + L ++ Sbjct: 122 EEIANQIRERMKKELGITVSVGVSFNKVFAKLGSDLKKPDATTLIKKENFKEIVWPLDIS 181 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 I G+GK + KL +G+ + GD+ K D + G G LW+ + G+D+R V Sbjct: 182 SIIGIGKATKRKLNGIGIYSLGDLAKTDSDAIRGILGINGLYLWQYANGLDDRPVKDYSY 241 Query: 240 R---KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R K++G T+ ED++ E I + L + +RL + +L + ++ ++ Sbjct: 242 REVIKTIGNSSTLVEDLYTNEEVYNIFQILSLNVSKRLREA--NLSSMGVNIFVRDNNLF 299 Query: 297 QTTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQM 343 + P + L A + ++ +R +G+ L Sbjct: 300 SYEFQSPINNPTQSSIILSEKAIDLFKKKYKWNFPIRALGIRAINLVDDK 349 >UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF6_9FIRM Length = 412 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 100/357 (28%), Positives = 178/357 (49%), Gaps = 12/357 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGM 61 I+HVDM+ F+ + E+ D P L+ P+A+GG + R G+I A+KFGV + P Sbjct: 2 DILHVDMNSFYVSCELIDKPNLKSQPVAVGGDEKLRHGIILAKTPMAKKFGVLTGEPIWQ 61 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A K CP+L + P ++ Y S ++I+ YT+++EP +DE +LD+T S GS Sbjct: 62 AKKKCPNLLIFPPNYEKYIRISKAAQKIYYSYTNQVEPYGMDECFLDITGSKKLFGSPEK 121 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA EI++ I EL++T S G++ K AK+ASDM KP+ I + L + + Sbjct: 122 IAFEIKERIKTELKVTVSVGLSFNKVFAKLASDMRKPDYCTFIYKENYKKIVWPLKVQDM 181 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER--- 238 +G + KL + ++T GD+ + D +L K G G ++ + G+D V Sbjct: 182 IMIGPQTTKKLNKINIKTLGDLAEADPEILRKNLGINGIKIYNWANGMDNTRVKDYYQII 241 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+G T ED+ ++ E A+I++L ++ +RL ++ + L V + ++ Sbjct: 242 PIKSIGRSITCKEDLLNYEEVRAVIQKLCEDISKRL--IENNYLARGVNVGYRKNNLSHE 299 Query: 299 TQEHVW--PRLNKADLIATARKTWDE---RRGGRGVRLVGLHVTLL-DPQMERQLVL 349 + + + P + ++ A A + + + +R + + L + Q+ L Sbjct: 300 SSDVLLDYPSNSTLEISAKAMDVFLKNFTFKDDEKIRALYIRAIKLIQNREAIQIDL 356 >UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus RepID=C7RFL5_ANAPD Length = 413 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 100/355 (28%), Positives = 177/355 (49%), Gaps = 10/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 + I+H DM+ +A++E + NP L+ IP+A+ G+ + R G+I + A++ GV++ Sbjct: 3 KVILHSDMNACYASIEQKLNPKLKGIPMAVAGNPKNRNGIILAKSQEAKEAGVKTGEALW 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP LT++P +D Y + S R+I+ YT+++EP LDE +LDVT S H G+ Sbjct: 63 QAFAKCPDLTIVPPHYDEYLKHSKLARKIYYEYTNQVEPFGLDECFLDVTGSAHLFGTGE 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA +IR+ + E+ +T S GV+ K AK+ SDM KP+ +I + LP+ + Sbjct: 123 EIANKIRERMKEEVGITVSVGVSFCKIFAKLGSDMKKPDAVTIIGEDNFKEIVWPLPVRE 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + GVG+ + KL +G+ T G++ D ++ G G LWE + G+D R V + + Sbjct: 183 MVGVGRATERKLNGIGIFTLGELANTDPDLIRNLLGINGVYLWEYANGLDIRPVHDRDHK 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 K++G T +D+ + E +++ L + +RL + L + ++ ++ Q Sbjct: 243 EPVKTIGNSSTCRKDLVNNREVFNVLQELSFSVSKRLR--QAGLEAFGVEIFVRNNELQS 300 Query: 298 TTQEHV--WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQ-MERQLV 348 + + L + E+ VR VG+ L + Q+ Sbjct: 301 YNFQKPIKLASQSSIVLAREGFDLFKEKYKWDFPVRAVGIRAIKLRKEGGGSQMD 355 >UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42_RHILO Length = 415 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 107/356 (30%), Positives = 163/356 (45%), Gaps = 14/356 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+H D+D F+A+VE +P+LR PIA+GG GV+ A+Y AR FGVR MP A Sbjct: 6 TILHADLDAFYASVEQLLDPSLRGKPIAVGG-----GVVLAASYEARAFGVRGGMPGRKA 60 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP L + G F Y+ + ++ +T +E +S+DEA+ DV H G I Sbjct: 61 RELCPQLIFVGGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTHLFGQPRDI 120 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 A IR + EL L S GVA K LAKIAS + KP+G V+ P FL LP++ + Sbjct: 121 ATAIRHRVRAELGLPISIGVARTKHLAKIASQVAKPDGLVVVDPGTELDFLHDLPVSLMW 180 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERLRK 241 GVG + ++L +G++T G++ + L + G G L + D R + + R Sbjct: 181 GVGPATKSRLAEIGIQTIGELARTHSGALTRLLGPAAGEKLAALAWNRDPRKLETRRRAH 240 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S G + + + + L + RL V+++F D T+ Sbjct: 241 SAGAQSALGQKPAVARVIVPTLLHLADRVASRLRAKAR--PGRTVTVRVRFADLSAVTRS 298 Query: 302 HVW--PRLNKADLIATARKT----WDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P L A + + + L+ + V+ L+ E QL L L Sbjct: 299 ITLDQPISATTMLAEIAGDLVRGVLADHPREKTISLLAISVSHLEESAELQLDLPL 354 >UniRef50_B7AQS7 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQS7_9BACE Length = 413 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 155/359 (43%), Gaps = 14/359 (3%) Query: 2 RKIIHVDMDCFFAAVEMRD-----NPALRDIPIAIGGS-RERRGVISTANYPARKFGVRS 55 R HVD++ F + + LR I +GG + R G++ + A + GVR+ Sbjct: 3 RVFFHVDVNSAFLSWSALKLLKEGHDDLRLIASCVGGDEKSRHGIVLAKSILAAQAGVRT 62 Query: 56 AMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 P MA K CP L + +FD Y + S + I +T +E S+DEA+LD+T Sbjct: 63 GEPLYMARKKCPGLVTVKPQFDWYVKNSRAMIAIMQEFTPDVEQYSIDEAFLDMTGMQTL 122 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 G A ++ I +EL T + G++ + LAK+ASD KP+ + P E+ + Sbjct: 123 MGPPLEAAARLKDRIRDELGFTVNIGISSNRLLAKMASDFEKPDKIHTLFPDEIDKKMWH 182 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 LP+ + GVGK +A L MG T GDV D +L+ + GK G + W + GI+ + Sbjct: 183 LPVGSLFGVGKSTAKALNNMGFYTIGDVAAADRGLLVSKLGKMGDMAWNYANGIESVAIV 242 Query: 236 SERLRK--SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 K S G T ED+ II L + RL V L Sbjct: 243 -RHEAKENSYGNSVTTGEDVSSIDVALGIIMSLAESVALRLRTDGKK--AGVVTVTLVDT 299 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMERQLVL 349 +F + + + P + A++ E R VRL+G+ + Q+ L Sbjct: 300 EFNRHSHQCSLEYPTNTTDVIYENAQQLLYEMWKADRPVRLIGISAGKAAHEEFEQMSL 358 >UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bifidobacteriaceae RepID=B7GNF3_BIFLI Length = 448 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 110/366 (30%), Positives = 170/366 (46%), Gaps = 22/366 (6%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++H+DMD F+A++E+ NP L+ P+ IG R V+S A+Y AR++G+ SAMP A Sbjct: 46 TVLHIDMDAFYASLEVARNPGLKGKPVIIGTGP--RAVVSAASYEARRYGINSAMPAARA 103 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIR-EIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 +LCP+ LP Y+ S+ I E+F T R E +S+DE Y+DV+ ++ G + Sbjct: 104 HQLCPNGVFLPVDMAYYRMMSHRIMHEVFLTVTDRFEQVSVDEGYMDVSTALLEWGRPSA 163 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 I IR + +T S G+A K +AK+AS KP+G +I A F+Q +PL I Sbjct: 164 IGAWIRAQVAERFHVTCSVGIACNKLVAKMASTNAKPDGMLLIPAARSAEFVQMMPLRGI 223 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK--FGRILWERSQGIDERDVNSERL 239 PG+G +L A G+ + ++ + D L + G R LW S G+D R + + R Sbjct: 224 PGIGPSLEKRLNAWGVHSVAELAQLDETALTRATGSPAAARGLWAASHGLDSRKITTVRE 283 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 KS+G E T+AED ++ E+ L + L+ VKL+F D T Sbjct: 284 EKSIGSEETLAEDTRDMRVVCGLLRSACDEVASTLR--RKGLVARTLTVKLRFADLSYQT 341 Query: 300 QEHVW--PRLNKADLIATARKTWD-----------ERRGGRGVRLVGLHVTLLDP--QME 344 + P L + + +RL G+ + L Sbjct: 342 RSFTMERPTDTAGVLYPECVRQLKVMLGLPASAESATPLPKTIRLAGMSTSSLSEAAATA 401 Query: 345 RQLVLG 350 Q L Sbjct: 402 VQPSLD 407 >UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria RepID=A3VP13_9PROT Length = 422 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 123/347 (35%), Positives = 180/347 (51%), Gaps = 11/347 (3%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I HVD D FFAA+E RD+P+L D P+ +GG RGV+ST Y AR +G+ SAMP A Sbjct: 35 IAHVDCDAFFAAIEKRDDPSLVDKPVLVGG--GHRGVVSTCCYIARSYGIHSAMPMFKAK 92 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS-ATLI 122 LCP ++P R AY+EA+ IR++ + T I+P+S+DEAYLD+ + HG+ + Sbjct: 93 ALCPQAVIVPPRGAAYREAAAQIRDLMAPLTPLIQPVSIDEAYLDLGGTERLHGAIPAQL 152 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 ++ + + ++ +T S G++ K LAKIASD +KP G +I E FL P +P Sbjct: 153 LAKLAKDVETQIGITLSIGLSVNKLLAKIASDFDKPRGFTLIGGTEAANFLAPYPPGLLP 212 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 G+G + KL G RT GD+Q C L+ R+G+ G L R+ G D R V +R KS Sbjct: 213 GIGTRFSEKLMRDGFRTLGDLQHCSTRELVDRYGEHGLTLRARACGEDPRPVTVDRETKS 272 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH 302 V E T DI + E + + ++ R + L +KLK F+ T+ Sbjct: 273 VSGETTFRADIGDAAALEDHLYAMARKVSSRAKE--KGLAGRVVTLKLKTARFRTFTRRQ 330 Query: 303 VWPRLN--KADLIATARKTW-DERRGGR---GVRLVGLHVTLLDPQM 343 P + + AR E + GR RL+G ++ L P Sbjct: 331 TLPHASNLTRVIFDCARAMLTAELQKGRTPVTYRLIGAGISDLVPAE 377 >UniRef50_UPI0001C32444 DNA-directed DNA polymerase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32444 Length = 370 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 112/365 (30%), Positives = 172/365 (47%), Gaps = 22/365 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I H+D D F+A+VE+ P LRD + + R V++TA+Y AR++GV SAMP Sbjct: 13 RVIAHLDCDAFYASVELLRRPDLRDKAVIVAHD-GPRSVVTTASYAARRYGVGSAMPLSR 71 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCPH LLP F++Y+ S + EI R++ L LDEAY D+T Sbjct: 72 AKRLCPHAILLPPDFESYRRVSRALWEIVGGRLGRLQHLGLDEAYADLTGVEK----PVR 127 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + +E+ + + E +T S G+ P + +AKI SD+ KP G + E + Sbjct: 128 VLRELVEQVRAETGITVSVGLGPSRLIAKICSDLGKPAGFVAMGREEAAQRFAGHSPKLL 187 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PG+G S +L MG+ T G +Q L +RFG + GR L R+ D +V + R+ Sbjct: 188 PGIGPKSVERLREMGIETIGQLQATPEERLTERFGARHGRDLLRRAHFHDSSEVETSRVL 247 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300 KS ERT ED+ ++ E I+ RL L L + + +K++ DD+ T+ Sbjct: 248 KSRSNERTFDEDVTSLTQLEEILRRLAQGLCEGLQ--RREKRGRTIAIKVRLDDWTTVTR 305 Query: 301 EHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME------------RQ 346 + A + A + R VRL+G+ + + + Q Sbjct: 306 ARTVDAHTNDTALVTDVALELLRAYAPPRPVRLLGVRLASFEDEEGAKAGSGGRAPPPDQ 365 Query: 347 LVLGL 351 L L L Sbjct: 366 LALPL 370 >UniRef50_UPI00016E76F4 UPI00016E76F4 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E76F4 Length = 1200 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 113/412 (27%), Positives = 177/412 (42%), Gaps = 70/412 (16%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV----------------------- 40 I HVDMDCFF +V +R+ P L+ P+A+ +R V Sbjct: 408 IFHVDMDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKVLHRPGANPQLERHYYQWKQSHTK 467 Query: 41 ----------------------------ISTANYPARKFGVRSAMPTGMALKLCPHLTLL 72 I++ +Y AR+ GVR+ M G A +LCP L + Sbjct: 468 SGETPSQESPESNTSGAGQETAALSMAEIASCSYEARQAGVRNGMFFGKAKQLCPSLQAV 527 Query: 73 PGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTIF 131 P F+AYKE + + E + YT IE LS DE +D + + S +A+ IR I Sbjct: 528 PYDFEAYKEVALTMYETLAGYTHDIEALSCDELLIDSSALLAELCISPEELAKAIRADIK 587 Query: 132 NELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAK 191 + AS G+ LA++A+ KP+GQ + +V F++ LP+ +PGVG V + K Sbjct: 588 EKTGCCASVGMGSNILLARLATRKAKPDGQHFLRSEDVDDFIRDLPVTSLPGVGPVMSRK 647 Query: 192 LEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMA 250 L AMG+R+CGD+Q+ L L K+FG + G+ L+ +G+D+R V E+ RKSV + Sbjct: 648 LVAMGVRSCGDLQQVSLSQLQKKFGPRTGQTLFRFCRGLDDRPVRYEKERKSVSADMNYN 707 Query: 251 EDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF---------------DDF 295 +E E + L E+++RL + V ++ D Sbjct: 708 IRFTTVNEAECFLTNLSMEVQKRLQEAGLRGRRVTLKVMVRKVGAPQEPAKYGGHGICDN 767 Query: 296 QQTTQEHVWPRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLDPQMERQ 346 T + + + K + + +R VG+ V L Q Sbjct: 768 LARTVMLAQSTDHGEVIASAVIKLFHAMNLQVQDLRGVGIQV-QLLDGNAHQ 818 >UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteria RepID=A6NU31_9BACE Length = 414 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 110/360 (30%), Positives = 169/360 (46%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALR--DIPIAIGGSRERR-GVISTANYPARKFGVRSAMP 58 R I+H D++ F+A+VE+ P LR P+A+ G E R G+I N PA+ GV++A Sbjct: 3 RTILHCDLNSFYASVELLSLPELRESGKPVAVCGDPESRHGIILAKNEPAKAMGVKTAET 62 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG- 117 A + CP L LLP D Y++ S + I+ R+T +EP S+DE++LD+T S+H G Sbjct: 63 IWQARQKCPDLVLLPAHRDQYRKYSRIVNAIYDRFTDLVEPFSIDESWLDITGSMHLWGG 122 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLP 177 IA IR+T+ E LT S GV+ K AK+ SD KP+ VIT L LP Sbjct: 123 DGKAIADRIRETVKAETGLTVSVGVSFNKVFAKMGSDYKKPDATTVITRENFRQLLWPLP 182 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 + + VG +A L G++T GD+ + D L+ GK G L + G + V Sbjct: 183 VTDLLFVGGAAAKVLRGYGVQTIGDLARFDPQALVTILGKQGAALHSYAAGTEHEPVIPA 242 Query: 238 R---LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 R KSVG T ++ + A + L E+ RL + L V ++ + Sbjct: 243 RDLPPPKSVGSGLTFRRNLLGLEDVRAGLSALSDEVAARLR--RHGLKCTTVQVTIRDPN 300 Query: 295 FQQTTQEHVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQME--RQLVL 349 F+ ++ P D+ A + + +R + + L + + QL L Sbjct: 301 FRDICRQKRLPAPTYVSRDIADAALELLLASWNLKLPIRALTVTGQNLVDEADAGEQLDL 360 >UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=Q0FEJ5_9RHOB Length = 391 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 125/348 (35%), Positives = 193/348 (55%), Gaps = 8/348 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 H+D D F+A+VE RDNP +D P+ IGG +RGV+STA Y AR GV+SAMP ALK Sbjct: 12 AHIDCDAFYASVEKRDNPKFKDKPLIIGG--GQRGVVSTACYIARIKGVKSAMPMFKALK 69 Query: 65 LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI-A 123 LCP ++ R DAY +AS I E+ S + IEPLSLDEA++D+ + HG + Sbjct: 70 LCPEAIVIAPRMDAYAKASKEINEMMSELSPSIEPLSLDEAFIDLRGTEKLHGEPPALSM 129 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 + Q I +L+++AS G++ K+LAK+ASD++KP G +I ++ FL + I G Sbjct: 130 ARLVQRIEKQLKISASVGLSYNKYLAKLASDLDKPRGFSIIGKYKIEEFLAPKSIGLIWG 189 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VGKV+ +LE G+R D+Q+ L+ ++ G LW +GID R+V ++ + KS+ Sbjct: 190 VGKVAQMRLEQDGIRIFADLQRRSHQELIDKYQNMGDHLWHLCRGIDNRNVIAKNVIKSI 249 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 E T + DI++ + + I RL ++ +R +LL +K+K F+ ++ Sbjct: 250 SKETTFSSDINNIEKLDGYIWRLSEQVSQRAKS--KNLLGHVITLKIKTKKFKTISRRKT 307 Query: 304 W--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER-QLV 348 P + A AR+ DE RL+G+ ++ L + QL Sbjct: 308 QREPTQIAEKIYAEARRMLDEVASEGPFRLIGVGISNLIDADKIDQLN 355 >UniRef50_C2FXW7 Possible DNA-directed DNA polymerase n=2 Tax=Sphingobacterium spiritivorum RepID=C2FXW7_9SPHI Length = 393 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 177/350 (50%), Gaps = 7/350 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R + H+D+D FF +VE N P+ +GG + R V+S +Y R +GV SAMP + Sbjct: 8 RFVAHLDLDTFFVSVERLKNTQFVGKPLIVGGMSD-RAVVSACSYETRLYGVHSAMPMKL 66 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 AL+LCP ++ G D+Y S + ++ Y +E S+DE Y D+T G + Sbjct: 67 ALRLCPQAIVIRGDMDSYSYYSRMVTDVVREYVPVMEKASIDEFYADLTGVDRFFGC-SQ 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 E++Q + E+ L S +A K ++K+A++ KP+G+ + +L L + ++ Sbjct: 126 FMAELKQKVRKEVGLPISYALASNKLISKVATEDAKPDGKREVEHGLEKDYLAPLRIERM 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 PG+G ++ L MG+RT + + + M+ GK G L ++ GID + +K Sbjct: 186 PGIGNKTSGLLHQMGVRTIKVLSEIPVPMMQNLLGKNGVDLSRKANGIDFTPIVPYSEQK 245 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 S+G E T +D ++ + R+ + +L + + L +KL++ +F +++ Sbjct: 246 SIGTEETFEQDTIDIYYLKSELIRMTERMTFQLRQHRR--LTGCITIKLRYSNFDTVSKQ 303 Query: 302 HVWP-RLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVL 349 V P + A L++ A++ + + R VRL+G+ + L Q + Q+ L Sbjct: 304 MVIPYTASDAVLLSKAKELFAKLYDKRLLVRLLGVRFSHLV-QGQYQIDL 352 >UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAM5_9FIRM Length = 425 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 172/360 (47%), Gaps = 16/360 (4%) Query: 3 KIIHVDMDCFFAAVEMRDN-------PALRDIPIAIGGSR-ERRGVISTANYPARKFGVR 54 I HVD++ F + D LRD+P AIGG R G+I+ + PA+++G+ Sbjct: 5 IIFHVDVNSAFLSWTASDRMAKGIDKVDLRDLPSAIGGDPKTRHGIITAKSIPAKRYGIV 64 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + P AL+ CP L L+PG + Y S + ++ +Y ++P S+DEA+ D+T + Sbjct: 65 TGEPVSQALRKCPSLILVPGDYSLYARQSQALMDLLRKYAPAVDPFSIDEAFCDMTGTAS 124 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 +G L A +++ I +L T + G++ LAK+ASD KP+ + P E+P + Sbjct: 125 LYGDPVLFAHKLKDEIRRDLGFTVNVGISSNHLLAKMASDFTKPDRVHTLWPREIPRKMW 184 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP A + VG+ +A KL+++G+ T GD+ +L+ FGK G + + G + D+ Sbjct: 185 PLPAADLLFVGESTAQKLKSLGILTIGDLAGTPEDLLVSHFGKHGSQMLAYANGTEPSDL 244 Query: 235 NSERLRKS--VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 S RKS E T++ D+ E I+ L L R+ + GV K Sbjct: 245 TSRH-RKSRGFSNEITISHDLVDREEARLILLSLCETLAARIRLQGDKI--RLVGVYYKD 301 Query: 293 DDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMER-QLVL 349 F +++ + + TA E GR +RL+G+ + +D Q+ L Sbjct: 302 SSFVSASRQTRLNRSSSSTQTIYETALSLLHELWDGRPLRLLGVRGSEIDKDSGSYQMDL 361 >UniRef50_Q8TIW3 DNA polymerase IV n=4 Tax=Methanosarcinaceae RepID=DPO4_METAC Length = 366 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 179/363 (49%), Gaps = 18/363 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIG---GSRERRGVISTANYPARKFGVRSAMP 58 R IIHVDMD F+AA+E R+ P L + + G E G +ST NY AR+FG+RS MP Sbjct: 4 RVIIHVDMDYFYAAIEEREKPELLGKAVVVCMLSGRSELSGSVSTCNYIAREFGIRSGMP 63 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTS------RIEPLSLDEAYLDVT-D 111 A KL P LP R + Y S+ I EI Y E +S+DEA+L++T Sbjct: 64 CSRAKKLNPEAVFLPVRKEFYTSVSDRIMEILRSYADPGENGDSFEQISVDEAFLEITYR 123 Query: 112 SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPA 171 + A + +I++ I + LT S G+ P K +AK+AS KP+G V++P A Sbjct: 124 AGGDFNLAFELGMQIKKEIKEKENLTCSIGIGPNKLIAKMASSAKKPDGITVVSPENQEA 183 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGID 230 FL L ++K+ G+G V+A KL+ M + T D+ + D++ L+ FGK G L + + GID Sbjct: 184 FLWPLKVSKLWGIGDVTAKKLQEMDIVTVKDLAEHDVIELISTFGKSRGTWLKQAASGID 243 Query: 231 ERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKL 290 + + + +G T+ ED +++E+L ++ +L +L V + Sbjct: 244 DSPLKEREGSEQIGRIATLPEDTLDQELILSLLEKLAGDVIEKLDS--RELSFRVVTVTV 301 Query: 291 KFDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGG--RGVRLVGLHVTLLDPQMERQ 346 +F+ T+ P +K L+ AR+ E R VG+ V L + Q Sbjct: 302 INSNFRTYTKSRTLNHPVSSKETLLEAAREILSEFLSESKTEFRRVGVRVGGLQKKKG-Q 360 Query: 347 LVL 349 L Sbjct: 361 TSL 363 >UniRef50_D1Y4D1 DNA polymerase IV n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4D1_9BACT Length = 412 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 122/353 (34%), Positives = 176/353 (49%), Gaps = 9/353 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 +IHVDMD F+AAVE+RDNPAL+ P+ IG + RGV++T +Y ARKFGV SAM A Sbjct: 4 TVIHVDMDAFYAAVEIRDNPALKGRPLIIGALPDERGVVATCSYEARKFGVHSAMNIKEA 63 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 + CP + + Y++AS+ + I+S Y E ++LDE YLDVT S G A + Sbjct: 64 YRRCPRGIFMHPNREKYRQASDRLHGIWSSYADVAEYVALDEGYLDVTRSALRFGGARRV 123 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQF-VITPAEVPAFLQTLPLAKI 181 A+ I++ E LT S GV K AK+AS+ KP+G F ++TP + + + + Sbjct: 124 ARLIKERTRAETGLTCSVGVGYSKTSAKLASEEKKPDGYFEILTPRDFIGLIIDRDITVL 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNS--ER 238 GVG +A KL G+ T DVQ + L GK GR L E S GID+R V E Sbjct: 184 YGVGARTAEKLYHAGIHTVRDVQN-NRERLAALLGGKTGRHLAELSLGIDDRPVIPADEA 242 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 KS+ E T +D H+ +I L L RLA + + +K + + + Sbjct: 243 DAKSISREVTFQKDTSHFGYLRDVILLLSLNLGDRLAALGLNG--RTVTLKATYWNMKTI 300 Query: 299 TQEHVWPRLNKA-DLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 T+ H ++ ++ VRL+G+ + L RQL Sbjct: 301 TRSHSGESVDHPYEIYQAGSALLAGIEKS-PVRLIGVGLQNLSETYARQLTFD 352 >UniRef50_C4LI62 DNA polymerase IV n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI62_CORK4 Length = 512 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 115/355 (32%), Positives = 163/355 (45%), Gaps = 8/355 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H+DMD FFA+ E P LR P+ +GG R V + A+Y AR FGV SAMP Sbjct: 25 RWVLHIDMDAFFASCEQLTRPTLRGRPVLVGGVSGRGVV-AGASYEARVFGVHSAMPMMR 83 Query: 62 ALKLCPHL-TLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA- 119 A +L + + RFD YK AS + EI IE LS+DEA+++ + Sbjct: 84 ARRLVGYAGITVRPRFDVYKTASRRVMEILREEAGLIEQLSVDEAFMEPDELSGATPDGV 143 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A +R+ I E L +S G K AKI S + KP+G FVI + A L LP+ Sbjct: 144 RKWAGHLRKRIREETGLPSSVGAGAGKQFAKIGSGLAKPDGTFVIPVQDQHAILDPLPVR 203 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSER 238 K+ G+G V+ AKL +G+RT + + GK G LW +QG D R V Sbjct: 204 KLWGIGPVAEAKLADIGVRTIEQFARMSRTDVEMALGKTNGPALWLLAQGHDPRPVAPRA 263 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 K V E T ++D+ + I + RRL VKLK DF++ Sbjct: 264 EAKQVSSESTFSDDVTTLDGVDEGIRAALTKAHRRLMNDGRG--ARTVTVKLKRADFERH 321 Query: 299 TQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ P + L A + + VRLVG+ ++ L+ + L L Sbjct: 322 TRSETLPFSTTDWDVLYRVASRLAADPAVFGAVRLVGVSLSGLESARQEALFPDL 376 >UniRef50_A4VCZ3 DNA polymerase IV / kappa n=1 Tax=Tetrahymena thermophila SB210 RepID=A4VCZ3_TETTH Length = 950 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 116/355 (32%), Positives = 180/355 (50%), Gaps = 21/355 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R +H DMD F+ A E++D P L+D+P+A+GG +ISTANY ARKFGVRSAMP + Sbjct: 104 RIWVHFDMDMFYVACELKDRPQLKDLPVAVGGM----SMISTANYVARKFGVRSAMPGFI 159 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---- 117 A KLCP L L+P F+ Y++AS+ +++ +Y +E + LDEA LD+TD + + Sbjct: 160 AKKLCPQLILIPCNFEKYRKASDQFKKVLYQYDPNLESMGLDEANLDITDYLQQNNINSD 219 Query: 118 -SATLIAQEIRQTIFNEL-QLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFL 173 + IR +F LT S G+ P K LAKI SDMNKPNGQF + ++ F+ Sbjct: 220 AQIYDLCHSIRNQVFESTGGLTCSCGIGPNKMLAKICSDMNKPNGQFQLINDEEKIKDFM 279 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQK--CDLVMLLKRFGKFGRILWERSQGIDE 231 + LP+ KIPG+G V+ L+ +G+ C + + D+ + K L + GI Sbjct: 280 KDLPIRKIPGIGNVTEQILKGIGIEKCSQILERVIDIKICFKDLS--FDHLVSSALGIGR 337 Query: 232 RDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 E +KS+ V RT + I E I ++ L + + V K Sbjct: 338 SWHEEETEKKSLSVSRTF-QAISTIEEINEKIHQISQLLAEDAKAEQK--IGKHLAVSFK 394 Query: 292 FDDFQQTTQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 FQ ++ + + + + A++ E +RL+G+ ++ L + E Sbjct: 395 NVKFQMRSKNRMLDKYIQDSEQIEKVAKELVKELLPTEPLRLIGIRLSQLADENE 449 >UniRef50_A7E7M1 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7E7M1_SCLS1 Length = 1255 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 156/374 (41%), Gaps = 34/374 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF AV ++ P D P + I++ NYPAR FGV++ M Sbjct: 435 RYIMHVDFDSFFCAVSLKSAPEYFDKPAVVAHGNGTGSEIASCNYPARVFGVKNGMWMKN 494 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT----------- 110 A+KLCP + +LP F AY+EAS E + +S+DEA++D+T Sbjct: 495 AIKLCPDIKVLPYDFPAYEEASKAFYEAILDVGGIFQSVSVDEAFVDITSLCLAAGGTDG 554 Query: 111 ------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A I +R+ I + S G+ LAK+A KP GQ+ I Sbjct: 555 VGIREGSIWREQERAEEIGNALRKVIREKTGCNVSVGIGGNILLAKVALRKAKPAGQYQI 614 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P EV F+ L + +PGV KLE +G++ DV++ L+ G K G +W Sbjct: 615 KPEEVLDFVGELDVQNLPGVAYSIGGKLEEIGVKFVKDVRQLSKDRLMTVLGPKTGEKIW 674 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + S+GID +V + +RKSV E E E ++ L EL+RRL + Sbjct: 675 DYSRGIDRAEVGEQVVRKSVSAEVNWGIRFISQVEAEEFVQNLCIELQRRLIDQRVKGRQ 734 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDER-RGGR 327 + K D + V + + A Sbjct: 735 MTMKIMRKAADAPLDPPKFLGHGNCDTFNKSIVLGVATNDATIIGREAVSILRSYGFSPG 794 Query: 328 GVRLVGLHVTLLDP 341 +R +G+ +T L+P Sbjct: 795 ELRGLGVQMTKLEP 808 >UniRef50_B6Q3Z2 DNA damage repair protein Mus42, putative n=5 Tax=Eurotiomycetidae RepID=B6Q3Z2_PENMQ Length = 1167 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 105/393 (26%), Positives = 162/393 (41%), Gaps = 45/393 (11%) Query: 2 RKIIHVDMDCFFAAVEM-RDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 R I+HVD D FFAAV + + +P L D P+AI I++ NYPAR FG+++ M Sbjct: 366 RYILHVDFDSFFAAVSINKHHPELVDKPVAIAHGTGSGSEIASCNYPARAFGLKNGMWMK 425 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT---------- 110 AL CP L +LP F AY+EAS + ++ +S+DEA +DVT Sbjct: 426 GALDRCPELKVLPYDFPAYEEASRQFYDCILAVDGVVQSVSIDEALIDVTMQCLQAGGSD 485 Query: 111 -------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFV 163 A IA +R I + S GV AK+A KP GQ+ Sbjct: 486 GRGISEGSIYREQAKADEIATSLRHAIKKKTGCAISVGVGGNILQAKVALRKAKPAGQYQ 545 Query: 164 ITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRIL 222 + P EV F+ L + +PGV KLE +G++ D++ L+ G K G L Sbjct: 546 LKPDEVLDFIGNLTVQDLPGVAYSLGGKLEEIGVKFVKDMRDLTRERLVSHLGPKTGAKL 605 Query: 223 WERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLL 282 ++ ++GID+ +V + +RKSV E + ++ E ++ L EL RRL + Sbjct: 606 YDYARGIDKAEVGVQTMRKSVSAEINWGIRFTNQTQAEEFVQSLSEELHRRLVENLVKGK 665 Query: 283 IARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDER-RGG 326 V + D + + + A Sbjct: 666 QLTIRVMRRSADAPLEPVKHLGHGKCDIFNKSVLLGIATNASDIISKEAIAMLRSFGFTP 725 Query: 327 RGVRLVGLHVTLLDP----------QMERQLVL 349 +R +G+ +T L+P ++QL Sbjct: 726 GDLRGLGVQMTKLEPVKSATGGRLESSQQQLNF 758 >UniRef50_UPI000186DDA3 terminal deoxycytidyl transferase rev1, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DDA3 Length = 752 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 107/395 (27%), Positives = 174/395 (44%), Gaps = 56/395 (14%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG----------------------- 39 +H+DMDCFF +V +R+ P L+ P+A+ S+ G Sbjct: 212 IYMHIDMDCFFVSVALRNYPHLKGQPVAVTHSKINFGANNSLIETKLNLAVENLDSLKLK 271 Query: 40 ---------------VISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASN 84 I++ +Y ARK GV + M G ALKLCP+L + F YKE S Sbjct: 272 SDEGVNQESKAFSMSEIASCSYEARKAGVCNGMYLGSALKLCPNLKTISYDFKGYKEVSF 331 Query: 85 HIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGSATLIAQEIRQTIFNELQLTASAGVA 143 + + YT IEP+S DE Y+D T + A +RQ I + + T+S G++ Sbjct: 332 MLYNTVAEYTLDIEPVSCDELYIDCTSVLSQIKINPIKFANILRQEIEEKTKCTSSVGIS 391 Query: 144 PVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV 203 K LA++A+ KPNG F +TP +V F++ + + +PG+G+ L+ + + TC D+ Sbjct: 392 ENKLLARLATKKAKPNGVFFLTPEKVEEFIKKVSIYDVPGIGRNIGGILKKLSVETCEDL 451 Query: 204 QKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAI 262 Q L L+K G K G+ L++ +GID+R +N RKSV E + E E Sbjct: 452 QNFSLSFLMKTLGSKIGKNLYDHCRGIDDRKINCNFERKSVSAEINYGIRFNDNEETEIF 511 Query: 263 IERLYPELERRLAKVKPDLLIARQGVKLKFDDF-------------QQTTQEHVWPRLNK 309 ++ L E+ +RL +K + + D ++ P+ + Sbjct: 512 LKELSQEVSKRLVNIKMAGKNITLKIMFRAKDAPIEAAKYLGHGLCDVISRSVTLPQASN 571 Query: 310 AD--LIATARKTWDER-RGGRGVRLVGLHVTLLDP 341 + + + +R +G+HV LD Sbjct: 572 DENIIANNVINLYHLLNIPPNELRGIGIHVNKLDS 606 >UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0B0_9FIRM Length = 406 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 166/348 (47%), Gaps = 9/348 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R I+H DM+ +F +VE+ +P L+D+P+A+ G+ + R G+I N A+K+G+++ Sbjct: 5 RVILHCDMNSYFVSVELLKHPELKDLPVAVAGNPKNRHGIILAKNEIAKKYGIKTGETIW 64 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A C L LL +D Y + +IF RY+ RIE S+DE+++DVT S+ G+ Sbjct: 65 AAKNKCKDLELLSPHYDEYIKYHKLFNDIFYRYSDRIEKFSVDESWIDVTGSIKLFGTGK 124 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA +IR + EL +T SAGV+ K AK+ S+ KP+ VI+ L LP+++ Sbjct: 125 EIADKIRGEVREELGITLSAGVSFNKVFAKMGSEYKKPDATTVISRDNYKEVLWPLPVSE 184 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS---E 237 VGK++A L + G+ T D+ + +L G L + + G +V Sbjct: 185 FFMVGKITAKLLNSYGIYTIKDLAAAEPQILKAELGVKIYELIDSANGKSSDEVKYYKDN 244 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 S+G +T ED+ ++ + + L + +RL +L A V +K DF+ Sbjct: 245 EDPMSIGHGKTFKEDLVTSTQVKKEVWGLSEMVAKRLRSH--NLFAAGVKVVIKDSDFKS 302 Query: 298 TTQEHV--WPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQ 342 +++ P + A + +R + + L P Sbjct: 303 YSRQKKLRLPTDVTGHIAEEAFSLIKASWDFSKKLRAMSITGIDLRPD 350 >UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiales RepID=A9KLV9_CLOPH Length = 432 Score = 343 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 175/360 (48%), Gaps = 14/360 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDN-------PALRDIPIAIGGSRERR-GVISTANYPARKFGV 53 + H+D++ F + E LR+IP IGG +E R G++ + A+K + Sbjct: 17 KIFFHIDVNSAFLSWEAAYRLHVLGESVDLREIPSVIGGDKENRHGIVLAKSTSAKKLKI 76 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 + G A++ CP+L ++P + Y +AS + EI R++ ++E S+DEA++D++ S Sbjct: 77 HTGEALGAAVQKCPNLVIIPPNYQRYVKASKSLMEILHRFSPKVEQYSIDEAFVDMSGSE 136 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 +G ++A ++ I EL+ T + GV+ K LAK+A ++ KPN + P E+P + Sbjct: 137 LLYGGPVIVANNLKDLIEEELKFTVNIGVSSNKLLAKMAGELKKPNLVHTMFPEEIPKKM 196 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERD 233 LP+ ++ VG+ + KL +G++T G++ + D+ +L FGK+G +L++ S GIDE Sbjct: 197 WPLPVGELFFVGRATEKKLFNLGIKTIGELAQTDVKILKAHFGKYGEVLYQFSHGIDESP 256 Query: 234 V-NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 + K G T DI ++ L + RL V + Sbjct: 257 LFVPLEANKGYGNSVTTPYDIVTMEHANLVLLSLSETVCTRLRMDGVKGQC--VSVSVTT 314 Query: 293 DDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDPQMERQLVL 349 D FQ+ + + + ++ A + + GR +R +G+H + + + Q L Sbjct: 315 DTFQRASHQGMLFSASNTTMEVYRFACRLFKNLWDGRTPIRQMGVHTSRITKESTMQYNL 374 >UniRef50_D2R9L6 ImpB/MucB/SamB family protein n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9L6_GARVA Length = 409 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 106/363 (29%), Positives = 166/363 (45%), Gaps = 25/363 (6%) Query: 9 MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68 MD F+A++E+ +P L+ P+ IG R V+S A+Y AR +GV SAMP A LCP Sbjct: 1 MDAFYASLEVARHPELKGKPLIIGTGN--RAVVSAASYEARAYGVNSAMPVVKARNLCPQ 58 Query: 69 LTLLPGRFDAYKEASNHIRE-IFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIR 127 LP Y S I E IF T+++E +S+DE Y++V ++ S I +R Sbjct: 59 GIFLPVDIPYYSSVSKSIFENIFLHITNQVEKVSVDECYMNVKSALLQWKSPVNIGTWVR 118 Query: 128 QTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKV 187 + +F + +T S G+A K +AK+AS KPNG +I F+ +PL IPG+G Sbjct: 119 KEVFEKYHITCSVGIASNKLIAKMASTNAKPNGMLLIPQKCNEDFVSIMPLRAIPGIGSS 178 Query: 188 SAAKLEAMGLRTCGDVQKCDLVMLLKRFG--KFGRILWERSQGIDERDVNSERLRKSVGV 245 KLE GL T ++ D L + G R++++ +GIDER V + KS+G Sbjct: 179 LIHKLEDWGLSTVASLKNVDEATLTRITGSQILARMIYQSVRGIDERTVTAHAPEKSIGT 238 Query: 246 ERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW- 304 ERT+ D + + + ++++ E+ ++L L+ +KL+F D T+ Sbjct: 239 ERTLDTDTTNENAVKQLLQQCCSEVTQQLR--NRKLMARTITLKLRFGDLHYVTRSSTLQ 296 Query: 305 -PRLNKADLIATARKTWDERRGG--------------RGVRLVGLHVTLLDPQMER--QL 347 + + VRL G+ L P + Q Sbjct: 297 NATDSTHEFYEHVVVLLSRANPTVHNYILGGNNTKLLSPVRLAGVTANNLVPANKVSLQP 356 Query: 348 VLG 350 L Sbjct: 357 SLN 359 >UniRef50_Q2HFL9 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2HFL9_CHAGB Length = 1141 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 157/375 (41%), Gaps = 35/375 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDN-PALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 R I+HVD D FF AV + + P RD P + S I++ NYPARKFGV++ M Sbjct: 311 RYIMHVDFDSFFCAVSLNRHAPDHRDKPTVVAHSTGSGSEIASCNYPARKFGVKNGMWMK 370 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD--------- 111 A +L P + ++P F AY+EAS + ++ +S+DEA +D+TD Sbjct: 371 RAQELYPDIKVVPYDFPAYEEASKLFYDAILDVGGVVQSVSIDEALVDITDIILSAAGSS 430 Query: 112 --------SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFV 163 A IA +R I + S G+ LAK+A KP GQ+ Sbjct: 431 GVGISEGSIWQEQEKADEIATNLRAEIKRKTDCHVSVGIGGNILLAKVALRKAKPAGQYQ 490 Query: 164 ITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRIL 222 + P EV L L + +PGV KLE + ++ D+++ L+ G K G L Sbjct: 491 VRPEEVLDILAPLKVEDLPGVAYSIGGKLEEIDVKFVSDLRQTSKERLVSILGPKTGEKL 550 Query: 223 WERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLL 282 WE ++GID +V + +RKSV + +E E + L ELERRL Sbjct: 551 WEYARGIDRAEVGEQPIRKSVSADVNWGIRFVSQAEAEEFVHNLCKELERRLLNEGVKGK 610 Query: 283 IARQGVKLKFDD-------------FQQTTQEHVW--PRLNKADLIATARKTWDERR-GG 326 + + D T+ + + + + + Sbjct: 611 NLTMKIMRRALDTPLDPAKHLGHGKCDTFTKSVTFGVATNDSGVIAKESVAILRSYKFSP 670 Query: 327 RGVRLVGLHVTLLDP 341 +R +G+ +T L+P Sbjct: 671 GDLRGLGVQMTKLEP 685 >UniRef50_D1HMR5 Whole genome shotgun sequence of line PN40024, scaffold_91.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HMR5_VITVI Length = 704 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 124/354 (35%), Positives = 182/354 (51%), Gaps = 16/354 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R +HVDMD F+AAVE DNP+LR P+A+GG +ISTANY ARKFGVR+AMP + Sbjct: 105 RIWLHVDMDAFYAAVETLDNPSLRGRPMAVGGM----SMISTANYEARKFGVRAAMPGFI 160 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SAT 120 A KLCP L +P F Y S+ R++F +Y SLDEAYLD+T+ + ++ Sbjct: 161 ARKLCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNERDLTSG 220 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT--PAEVPAFLQTLPL 178 IA+E+R ++ LT SAGVAP + LAK+ SD+NKPNGQFV+ V F+ +LP+ Sbjct: 221 EIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPI 280 Query: 179 AKIPGVGKVSAAKLEA-MGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNS 236 KI G+GKV+ L G+ TC ++ + L F G+ + D Sbjct: 281 RKIGGIGKVTEHILSGVFGINTCEEMLQKG-GFLCALFSRSSADFFLSVGLGLGKTDTPQ 339 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R RKS+ ERT + + + L L + K L +KLK F+ Sbjct: 340 VRFRKSISNERTFSA-TDDTALLYQKLAELSEMLSIDMQ--KEGLSGRTLTLKLKTASFE 396 Query: 297 QTTQEHVWPRL--NKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLV 348 ++ + ++ D++ A K + +RL+GL ++ + + L Sbjct: 397 VRSRAVTMQKYICSREDILNHALKLLNA-ELPLSLRLIGLRISHFNEDKDGHLS 449 >UniRef50_Q03R40 Nucleotidyltransferase/DNA polymerase for DNA repair n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03R40_LACBA Length = 371 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 126/361 (34%), Positives = 177/361 (49%), Gaps = 16/361 (4%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMP 58 RKIIHVDMD F+A++E RD+PA + P+ I RGV++TANY AR+ GV SAM Sbjct: 9 RKIIHVDMDAFYASIEERDHPAFKQHPLIIAQDPRKTGGRGVVATANYAARQLGVHSAMN 68 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 ALKL P P F Y++ S+ I EIF YT +IEP++ DEAYLDVT++ H S Sbjct: 69 ANEALKLAPQAIFQPPNFPLYRQISDQIHEIFHEYTDKIEPVAFDEAYLDVTENKHHLHS 128 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A +A EI+ IF + LT S G++ KFLAK ASD KP G VI P + FL LP+ Sbjct: 129 AVQVAHEIQVEIFEKTHLTCSTGISYSKFLAKEASDFRKPVGVSVILPEDAHDFLMALPI 188 Query: 179 AKIPGVGKVSAAKLEAMG----LRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 + GVGK + K+ +G TC Q M L S+ + + Sbjct: 189 ERFRGVGKKTVPKMHELGNSYLEPTCIIGQSWPSFMSLVNL---AMFCISGSEELTSGRL 245 Query: 235 NSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 +R RKS+G ERT + E E ++RL + + + + +KL+ Sbjct: 246 PYQRERKSIGKERTYGPPLTTLGEVENQLQRLAEMVAATVQEKQRHG--KTLVLKLRTSA 303 Query: 295 FQQTTQEHVWP---RLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQMERQLVLG 350 F+ T+ + + A + VRL+G+ +T L Q + L Sbjct: 304 FKTLTKRYTQADFIANDAQTYYDLALDLYQSVAGENEQVRLLGITITGLAAQTFENVRLP 363 Query: 351 L 351 L Sbjct: 364 L 364 >UniRef50_B4MLB6 GK17515 n=1 Tax=Drosophila willistoni RepID=B4MLB6_DROWI Length = 1022 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 107/409 (26%), Positives = 175/409 (42%), Gaps = 66/409 (16%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR----------------------- 38 R ++H+DMDCFF +V +R +P LR P+A+ S+ Sbjct: 273 RYVMHIDMDCFFVSVGLRLHPELRGQPVAVTHSKGGNAATDVPVHPQADRQAEQELFAQR 332 Query: 39 ------------------------GVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPG 74 I++ +Y AR G+R+ M G AL+LCP L +P Sbjct: 333 FEHLLHDNIRADKVRTGFEKKMSLSEIASCSYEARAKGIRNGMFVGRALELCPELKTIPY 392 Query: 75 RFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSATLIAQEIRQTIFNE 133 FD Y+E +N + + ++YT IE +S DE ++++TD V +R+ + ++ Sbjct: 393 DFDGYREVANALYDTVAQYTLNIEAVSCDEMFVELTDLVSELQVDVMEFVGHLREEVRSK 452 Query: 134 LQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAKIPGVGKVSAAKL 192 SAGV K L+++A+ KPNGQF++ P ++ +++ L +PGVG + KL Sbjct: 453 TGCPCSAGVGANKLLSRMATKEAKPNGQFLLNPDGDILSYMAPTALESLPGVGSSISHKL 512 Query: 193 EAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAE 251 + GL CGDVQK + L G K + L + +GID R + E+ RKS+ E Sbjct: 513 KQAGLNNCGDVQKISVEQLETVLGKKMAQTLHQNCRGIDPRPLAYEQQRKSLSAEVNYGI 572 Query: 252 DIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK-------FDDF------QQT 298 SECE + +L E+ RL +VK + ++ F Sbjct: 573 RFTKTSECEKFLRQLSIEVHTRLKEVKRTTKSITLKLMVRAAEAPIETSKFMGHGVCDVW 632 Query: 299 TQEHVWPRLNKAD--LIATARKTWDE-RRGGRGVRLVGLHVTLLDPQME 344 T+ + + + +R VG+H+ L+ E Sbjct: 633 TKSALLRTGTADVNIITDQVLSLLKQSNLPSNELRGVGIHLNKLEDPTE 681 >UniRef50_Q7Q6B2 AGAP005939-PA n=2 Tax=Culicidae RepID=Q7Q6B2_ANOGA Length = 1055 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 104/403 (25%), Positives = 175/403 (43%), Gaps = 64/403 (15%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR----------------------- 38 R I+H+DMDCFF +V +R P LR +P+A+ SR Sbjct: 288 RYIMHIDMDCFFVSVGLRKYPHLRGLPVAVTHSRGSEARVPSHPGQNRALEIELYHKRLE 347 Query: 39 -----------------------GVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGR 75 I++ +Y AR+ GV++ M G ALKLCP L +P Sbjct: 348 ERYKAPDIPIESRLAAIDEHNSLSEIASCSYEARQCGVKNGMFVGAALKLCPELKTIPYD 407 Query: 76 FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT-LIAQEIRQTIFNEL 134 FD Y+E ++ + + +RYT IE +S DE ++D+T+ + G +R I Sbjct: 408 FDGYREVAHQLYDTIARYTLDIEAVSCDEMFVDLTELLQSTGVGVMEFVTYVRNEISTAT 467 Query: 135 QLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEA 194 SAG+ + A++A+ KPNGQ+ + P V +++ +P+A++PGVG ++ +L Sbjct: 468 GCDCSAGIGANRLQARMATKRAKPNGQYHLVPGAVEEYMKVIPIAELPGVGPSTSHRLRK 527 Query: 195 MGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDI 253 M TC D+Q +L FG KFG L+ +GIDER + +R RKSV V+ Sbjct: 528 MTYVTCADLQTIPKNVLQTEFGKKFGETLYNACRGIDERPLVYDRGRKSVSVDVNYGIRF 587 Query: 254 HHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK-------FDDF------QQTTQ 300 E E + +L E+ RRL +++ + + ++ F T+ Sbjct: 588 STEQEVERFMRQLTQEIHRRLVELRQRGKLVTVKLLVRSPEAPVETAKFMGHGLCDVVTK 647 Query: 301 EHVWP--RLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLD 340 ++ + +R +G+ ++ + Sbjct: 648 SQPLRQHTDDRGMIEGAVLGLMRMLAIAPSELRGIGIQISKFE 690 >UniRef50_UPI0001B7B957 DinB1 protein n=3 Tax=Euteleostomi RepID=UPI0001B7B957 Length = 793 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 42/374 (11%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD F+AAVEMRDNP L++ PIA+G +++T+NY AR+FGVR+AMP +A Sbjct: 101 TIVHVDMDAFYAAVEMRDNPELKEKPIAVGSM----SMLATSNYHARRFGVRAAMPGFIA 156 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP L ++P FD Y+ S ++EI + Y +SLDEAYL++T + Sbjct: 157 KRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQE----RQG 212 Query: 123 AQEIRQTIFNELQLTASAG----------------------VAPVKFLAKIASDMNKPNG 160 E ++ F ++ G +AP LAK+ SD NKPNG Sbjct: 213 WPEDKRRYFIKMGNCRKIGILTLAMTTGNFHLLRLAQPQGCIAPNTMLAKVCSDKNKPNG 272 Query: 161 QFVITP--AEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF 218 Q+ I P + V F++ LP+ K+ G+GKV+ L A+G+ TC ++ + ++ L Sbjct: 273 QYQIVPSRSAVMDFIKDLPIRKVSGIGKVTEKMLLALGIVTCTELYQQRALLSLLFSESS 332 Query: 219 GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 + G+ D+ + RKS+ VERT +E I+ E ++ + L EL L K Sbjct: 333 WHYFLHVALGLGSTDLARDGERKSMSVERTFSE-INKTEEQYSLCQELCTELAHDLQ--K 389 Query: 279 PDLLIARQGVKLKFDDFQQTTQEHVWPRL--NKADLIATARKTWDER-----RGGRGVRL 331 L +KLK DF+ T+ P D+ A A++ +RL Sbjct: 390 EGLKGRTVTIKLKNVDFEVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRL 449 Query: 332 VGLHVTLLDPQMER 345 +G+ ++ +R Sbjct: 450 MGVRMSTFSNDDDR 463 >UniRef50_B2AY86 Predicted CDS Pa_1_10240 n=3 Tax=Sordariomycetes RepID=B2AY86_PODAN Length = 1122 Score = 340 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 155/374 (41%), Gaps = 34/374 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF A+ ++ P D P + I++ NYPARKFGV++ M Sbjct: 342 RYILHVDFDSFFCAISLQKCPEYADKPTVVAHGSGTGSEIASCNYPARKFGVKNGMWMKR 401 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 AL+LCP L +LP F Y++AS ++ ++ +S+DEA +DVTD V Sbjct: 402 ALELCPGLKVLPYDFAGYEKASEVFYQVLLGVGGVVQSVSIDEALVDVTDVVLRGVGSTG 461 Query: 114 ---------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IA+ +R + S G+ LAK+A KP GQ I Sbjct: 462 VGVGEGSVCREQEKAEEIARGLRGEVRRRTGCEVSVGIGGNVLLAKVALRRAKPAGQHQI 521 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P EV + L + +PGV +LE MG+R D++ L+ G K G LW Sbjct: 522 RPEEVLDSIGELGVEGLPGVAGSIGGRLEEMGIRFVKDIRGTTRERLVSVLGPKTGERLW 581 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + ++G+D ++ + +RKSV + E E + L ELE+RL + Sbjct: 582 DYARGVDRSELGEQPVRKSVSADVNWGIRFVSQEEAEEFVRNLCGELEKRLLAEGVKGKL 641 Query: 284 ARQGVKLKFDDF-------------QQTTQEHVW--PRLNKADLIATARKTWDERR-GGR 327 + + D + + + + A + Sbjct: 642 LTVKIMRRSLDAPLDPAKHLGHGKCDTFNKSASFGVATCDAEVIGKEAVGILRSYKFSPG 701 Query: 328 GVRLVGLHVTLLDP 341 +R +G+ +T LD Sbjct: 702 DLRGIGVQMTKLDH 715 >UniRef50_A5Z8E0 Putative uncharacterized protein n=10 Tax=Clostridiales RepID=A5Z8E0_9FIRM Length = 428 Score = 340 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 184/367 (50%), Gaps = 20/367 (5%) Query: 1 MRKIIHVDMDCFFAAV-------EMRDNP---ALRDIPIAIGGSRERR-GVISTANYPAR 49 M I H+D++ + + E + +R+IP IGG RE+R G++ + A+ Sbjct: 1 MGIIFHIDVNSAYLSWTAVKLLKEATKDEKKIDIRNIPAIIGGDREKRHGIVLAKSISAK 60 Query: 50 KFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDV 109 KFG+ + P AL+ CP++ ++P Y E S+ + + +T IE +S+DE Y+D Sbjct: 61 KFGIVTGEPIANALQKCPNILIVPPEHGYYNEQSHKLMNLLRTFTPDIEQVSVDECYMDF 120 Query: 110 TDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEV 169 + + + S A +I+ T+ +L T + G++ VK LAK+ASD KP+ + E+ Sbjct: 121 SGIQNEYPSPLACAYKIKDTVKEKLGFTVNVGISDVKVLAKMASDFTKPDKVHTLYRREI 180 Query: 170 PAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGI 229 + LP+ ++ GK S L +G+ G + +L K G+ILWE + GI Sbjct: 181 KEKMWQLPVEELYMAGKSSVNTLHKLGIYNIGQLATSPEYILEAHLKKHGKILWEYANGI 240 Query: 230 DERDVNSERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV 288 D+ VN++R K VG T+ D+ + E E I+ +L ++ RL K K + V Sbjct: 241 DKSVVNTKREELKGVGNSITLPYDLDNMEEIEKILLQLSEKVAGRLRKGKQ--MAKTVAV 298 Query: 289 KLKFDDFQQTTQEHVWPRLNKA--DLIATARKTWDERRG---GRGVRLVGLHVTLLDPQM 343 ++K++DF + +++ R + ++ +++ + E + VRL+G+ L+ Q Sbjct: 299 EVKYNDFIKASRQTTLDRCTDSGTEIYQLSKELFRELWEKDGNKSVRLLGIRTANLEEQG 358 Query: 344 E-RQLVL 349 Q+ + Sbjct: 359 ALEQMSI 365 >UniRef50_D2VFM3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VFM3_NAEGR Length = 888 Score = 339 bits (871), Expect = 9e-92, Method: Composition-based stats. Identities = 105/354 (29%), Positives = 177/354 (50%), Gaps = 18/354 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 ++H+DMDCFFA++ MRDNP+L++ PIA+ S + G IS+ANY AR FGVR+ M A Sbjct: 271 VVHIDMDCFFASIAMRDNPSLKNKPIAVSYSTDGTGDISSANYCARDFGVRAGMWMKQAR 330 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH--GSATL 121 +LCP L ++P F+ Y EA++ I EI + + R++ +S+DEA++++T+ + + Sbjct: 331 ELCPDLIVVPYEFEKYNEAASKIDEILNSHCERVKIISIDEAFIEITNELKNNTVEELNE 390 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 + +IR I E + TASAG++ + LA+IA+ KPNGQF + E +F++ L + +I Sbjct: 391 LVSKIRNEIERETKCTASAGMSTNQLLARIATKKAKPNGQFYLDAKEAVSFIENLNIEEI 450 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 P VG + M + C + L + G K G L+ +GID+R + R Sbjct: 451 PSVGWKTKKFFNQMSITKCSQLLSYSKTELKELVGEKKGETLYNFLRGIDKRPFFDDTGR 510 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF----- 295 KSVGVE ++ I++L E+ RL VK + D+ Sbjct: 511 KSVGVEVNYGIRFTKMAQVSEFIDKLSIEVTSRLKNENVKGKAIVLKVKKRKDEAPEAKK 570 Query: 296 -------QQTTQEHVWP--RLNKADLIATARKTWDER-RGGRGVRLVGLHVTLL 339 ++ P + + + +++ +R + + + L Sbjct: 571 YLGHGICDNFSKSCTVPYFTDDSDLISRKVKDLYNQLSIEAEDLRGIAIQIQKL 624 >UniRef50_Q5Q9H0 Polymerase kappa isoform 9 n=3 Tax=Murinae RepID=Q5Q9H0_MOUSE Length = 467 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 117/337 (34%), Positives = 178/337 (52%), Gaps = 20/337 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVDMD F+AAVEMRDNP L+D PIA+G +++T+NY AR+FGVR+AMP +A Sbjct: 101 TIVHVDMDAFYAAVEMRDNPELKDKPIAVGSM----SMLATSNYHARRFGVRAAMPGFIA 156 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 +LCP L ++P FD Y+ S ++EI + Y +SLDEAYL++T + Sbjct: 157 KRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQERQD---- 212 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP--AEVPAFLQTLPLAK 180 E ++ F ++ G+AP LAK+ SD NKPNGQ+ I P + V F++ LP+ K Sbjct: 213 WPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPIRK 272 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERL 239 + G+GKV+ L A+G+ TC ++ + +L F + + G+ D+ + Sbjct: 273 VSGIGKVTEKMLMALGIVTCTELYQQ-RALLSLLFSETSWHYFLHIALGLGSTDLARDGE 331 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 RKS+ VERT +E I E ++ + L EL L K L +KLK +F+ T Sbjct: 332 RKSMSVERTFSE-ISKTEEQYSLCQELCAELAHDLQ--KEGLKGRTVTIKLKNVNFEVKT 388 Query: 300 QEHVWP--RLNKADLIATARKTWDERRG---GRGVRL 331 + P ++ A A++ +RL Sbjct: 389 RASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRL 425 >UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2F2_ACICJ Length = 411 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 113/344 (32%), Positives = 165/344 (47%), Gaps = 9/344 (2%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I HVD D F+A+VE RD P L D P+ +GG RGV++ Y AR GVRSAMP A Sbjct: 37 IAHVDCDAFYASVEKRDRPELTDKPVIVGGGT--RGVVAACCYIARLSGVRSAMPMFKAR 94 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 KLCP ++ Y A+ IR + + T ++PLS+DEA LD++ + H + + Sbjct: 95 KLCPDAVVIAPEMRKYAAAAAEIRALMATLTPLVQPLSIDEAALDLSGTAALHRAPPAVV 154 Query: 124 -QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 + + E+ +T S G+A + LAK+A++ +KP G V+ A L P+ +P Sbjct: 155 LSRFARQVEAEVGVTVSIGLAANRLLAKLAAERDKPRGFAVLGAEA-AAVLAPEPVGILP 213 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKS 242 GVG A KL MG+ G + + R G+ G +L R++GID R ++ R KS Sbjct: 214 GVGPALARKLAGMGITRVGQLAALNDRAARARLGEDGPMLAARARGIDPRPIDPARATKS 273 Query: 243 VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE- 301 + E T AEDI + ++ L +L RRL A +KLK F+ T Sbjct: 274 ISAETTFAEDIDDAASLARVLFPLCEKLARRLRA--EGFAAAGLVLKLKTARFETHTHAV 331 Query: 302 -HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 P + A+ G R RL+G+ L E Sbjct: 332 RLTAPTQLAETIFEAAKPVLMRAAGPR-YRLIGIGAARLTDAAE 374 >UniRef50_B8M4C5 DNA-directed polymerase kappa, putative n=14 Tax=Leotiomyceta RepID=B8M4C5_TALSN Length = 654 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 178/358 (49%), Gaps = 20/358 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++HVD D FFAAVE D P L+ +P A+G +GV++T NY ARKFG RS M +A Sbjct: 118 TVVHVDCDAFFAAVEELDRPELKHLPFAVG-----KGVLTTCNYVARKFGCRSGMAGFVA 172 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS-VHCHGSATL 121 KLCP L +P ++ Y + IR IF++Y E S+DEAYL++T + Sbjct: 173 KKLCPDLICIPQNYEKYSAKAEEIRAIFAQYDPCFESASIDEAYLNITAYCDENNMDPQE 232 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT--PAEVPAFLQTLPLA 179 Q++R I E ++T SAG+A LAKIAS+ NKPNGQ+ I + +F++ LP+ Sbjct: 233 AVQQMRARIAEETKITVSAGIATNTKLAKIASNQNKPNGQYFIPSEREAIMSFVKDLPVR 292 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERDVNS-- 236 K+ G+G+V +L A+G+ TCG + +L + F GK + L + G+ + Sbjct: 293 KVNGIGRVFERELRAVGIETCGQIYPQ-RALLKRLFGGKAFQFLMQCYLGLGRTKIQPAE 351 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 + RKSVG E T AE I + EL + L + +K+K F+ Sbjct: 352 DYERKSVGTESTFAE-ISDPDAIRVKLRWAADELAKDL--ARTQFKGRTLVLKVKLHTFE 408 Query: 297 QTTQEHVWPRLN--KADLIATARKTWDERR---GGRGVRLVGLHVTLLDPQMERQLVL 349 T++ P+ DL + + + +RL+GL T L + L Sbjct: 409 VYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHLVSTKKVGLDF 466 >UniRef50_Q29DW0 GA11465 n=3 Tax=Drosophila RepID=Q29DW0_DROPS Length = 954 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 108/409 (26%), Positives = 173/409 (42%), Gaps = 66/409 (16%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR------------------------ 38 I+H+DMDCFF +V +R +P R +PIA+ S+ Sbjct: 272 YIMHIDMDCFFVSVGLRSHPEWRGLPIAVTHSKGGNAATDVPVHPQADRQAELKLFAERF 331 Query: 39 -----------------------GVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGR 75 I++ +Y AR G+R+ M G ALKLCP L +P Sbjct: 332 EHQLHDNIRADKVRSGFDKKMSLSEIASCSYEARAKGIRNGMFVGQALKLCPELKTIPYD 391 Query: 76 FDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLIAQEIRQTIFNEL 134 F+ YKE + + + ++YT IE +S DE ++D+TD V +R+ + N+ Sbjct: 392 FEGYKEVAFALYDTVAQYTLNIEAVSCDEMFVDLTDLVEDLQVDVMSFVAHLREEVRNKT 451 Query: 135 QLTASAGVAPVKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAKIPGVGKVSAAKLE 193 SAGV K LA++A+ KP+GQ+++ P +V ++ L +PGVG KLE Sbjct: 452 GCPCSAGVGTNKLLARMATKRAKPDGQYLLGPGTDVLGYMAPTALETLPGVGSSLRHKLE 511 Query: 194 AMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAED 252 GLR C DVQ+ L L G K L+E +GID R + E+ RK+V E Sbjct: 512 QAGLRNCADVQRTSLQTLESVVGKKLALTLYENCRGIDTRPLVYEQKRKTVSAEVNYGIR 571 Query: 253 IHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF-------------QQTT 299 + +ECE + +L E+ RL +K V ++ + Sbjct: 572 FTNTTECETFLRQLSAEVTTRLTDIKRKAKSIGLKVMVRAAEAPIEASKFMGHGVCDTIN 631 Query: 300 QEHVW--PRLNKADLIATARKTWDER-RGGRGVRLVGLHVTLLDPQMER 345 + + + + + + E +R +G+H++ L E Sbjct: 632 KSFILTHATDDVNVITSHVLRLMKESGLPPHELRGIGIHLSKLSEATEV 680 >UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFE4_ANADF Length = 459 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 110/376 (29%), Positives = 170/376 (45%), Gaps = 34/376 (9%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I +D+D FF +VE +P L P+ +GG RGV++ A+Y R+ GV+S M A Sbjct: 18 ICCLDLDTFFVSVERLLDPTLEGKPVVVGGKPGSRGVVTAASYEVRRLGVKSGMSLFEAG 77 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA---- 119 K P+ LP R D Y + +REI R+ + S+DE YLD + + SA Sbjct: 78 KRAPNAIYLPTRHDVYGTYAERVREIARRFAPTVRVASIDEMYLDFSGCERLYRSAGAAR 137 Query: 120 -------------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP 166 ++ IF+EL L +SAGVA K +AK+AS + KP G ++ Sbjct: 138 ENGAEDRAGDAIIEGAVLQLTTAIFDELGLPSSAGVATSKVVAKVASALAKPRGVMLVPA 197 Query: 167 AEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERS 226 A L LP+ PG+G V+ AKL A G +T G V + L L FG + + Sbjct: 198 GVERAVLAPLPVRSFPGIGPVAEAKLHAAGYQTLGAVAEASLADLQTIFGAWAASISRGV 257 Query: 227 QGIDERDVNSERLR-----------KSVGVERTMAEDIHHWSECEAIIERLYPELERRLA 275 QG+ D+ ER S+ ERT ED+ + EA++ L + R Sbjct: 258 QGLGSGDLCRERPAFAEHDPEGETVGSISNERTFREDVTDPASIEAVLCGLCERVCWRAR 317 Query: 276 KVKPDLLIARQGVKLKFDDFQQTTQEH-VWPRLNKADLIATARKTWDERR-GGRGVRLVG 333 + + +KL++ DF T+ H ++ +L ++ + R +RL+G Sbjct: 318 --RRHVKARTVTLKLRYADFHTLTRSHTTMATNSELELYPIVKEMFAAARTRSLPIRLLG 375 Query: 334 LHVTLLDPQMERQLVL 349 + ++ L QL L Sbjct: 376 VQLSSL--GTFEQLPL 389 >UniRef50_D0NDK9 DNA repair protein REV1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NDK9_PHYIN Length = 943 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 107/363 (29%), Positives = 165/363 (45%), Gaps = 25/363 (6%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+HVDMDCFF AV +RD P L+D+P+A+ S IS+ NY AR GV + M Sbjct: 255 RVILHVDMDCFFVAVAVRDKPELQDVPVAVAHSSNAGSSEISSCNYSARAKGVGAGMFMQ 314 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A +LCP L +LP +FD + S I +IF +T ++ +S DEA+L+ Sbjct: 315 TAKELCPELIVLPYQFDDIQRVSFQIYDIFFSHTPYVQAVSCDEAFLEF----EKGTKGM 370 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVPAFLQTLPLA 179 A IRQ IF + AS GV+ LAK++S KP+G + I P++ F+ L + Sbjct: 371 EKANAIRQEIFEQTGCPASVGVSFNILLAKLSSKKAKPDGVYAISDPSQAKEFMLQLKVR 430 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDV--NS 236 +PG G ++AAKLEA+G+ + L++ GK G L+ ++G+D R + S Sbjct: 431 DLPGAGHMTAAKLEALGVEDARQLVSMTRTELVQSLGKAAGERLFNYARGVDMRPLSMES 490 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF---- 292 +RKSV W + + L EL RL +K +K + Sbjct: 491 NMMRKSVSAVVNFGIRFDKWEDATVFLMALGEELSHRLRNLKVRTKCLTLLIKKRAEGAP 550 Query: 293 ---DDF------QQTTQEHVW--PRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLD 340 F ++ + P ++ + + + +R VG+ T L Sbjct: 551 IEPSKFMGHGVCDNFSKSQILAQPTDDEVVIGKACIELLRQLNFPSEDLRGVGVQATKLI 610 Query: 341 PQM 343 Sbjct: 611 SDA 613 >UniRef50_C3WGR0 DNA polymerase IV n=6 Tax=Fusobacterium RepID=C3WGR0_9FUSO Length = 352 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 171/353 (48%), Gaps = 12/353 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+H DMD F+A++E+ NP L++ P+ +G + +++TA+Y ARK+G+ SAM Sbjct: 3 RIIMHYDMDAFYASIEINRNPKLKNKPLVVGEN-----IVTTASYEARKYGIHSAMKVSD 57 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A LCP L +P Y SN I + + T+++E ++ DE Y+D+T V Sbjct: 58 AKLLCPKLIAIPVDKKEYIRISNEIHNLILKITNKVEFIATDEGYIDLTGIVKPENK-KQ 116 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAK 180 A + ++ I LT S G+ K AKIASD+NKP G ++ + ++ + Sbjct: 117 FALKFKERIKELTNLTCSVGIGFNKLSAKIASDINKPFGIYIFENEKDFVEYISDKKIKI 176 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSERL 239 IPGVGK L+ + DV K L L+K++GK G L+ +GI+ +V ER Sbjct: 177 IPGVGKKFFEILKHDKIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGINHDEVEYERE 236 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 S+G E T + + SE E L+ +RL +K ++ VK+++ F+ T Sbjct: 237 IHSIGNEETYSIPLQTNSELEREFNSLFEYTYQRL--LKNNVFSQSVTVKIRYSSFKTYT 294 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG 350 + +K L + + +RL+G++ + QL + Sbjct: 295 KSKKLKFATKDKDFLYNEMLELLNSFELEDEIRLLGIYFGDIKRNTLIQLSIN 347 >UniRef50_C8WGA6 DNA-directed DNA polymerase n=3 Tax=Bacteria RepID=C8WGA6_EGGLE Length = 448 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 102/366 (27%), Positives = 166/366 (45%), Gaps = 19/366 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60 R I H DM+ F+A+VE + P LR +P+ +GG E R G++ + A+ GV++ Sbjct: 28 RVIFHSDMNAFYASVEQAERPELRGVPLVVGGHEELRHGIVLAKSAQAKAAGVKTGEALW 87 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SA 119 A CP L ++P R++ Y+ S R I+ +YT +EP LDEA+LD+T S+ G Sbjct: 88 EARAKCPGLVVVPPRYEVYQAYSAMARRIYYQYTDLVEPFGLDEAWLDLTGSLPLLGGDP 147 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A EI I EL T S GV+ K AK SD KP+ ITP + P++ Sbjct: 148 ARTAAEISGRIKAELGCTVSVGVSWNKIFAKFGSDFRKPDAITFITPQNYRCRVWEAPVS 207 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS--- 236 ++ VG + AKL + G+ G++ +L +R GK G +L ++G D V Sbjct: 208 ELLYVGAATRAKLHSSGIDRIGELACASPELLRRRLGKIGLVLRAFARGEDATPVKPYDQ 267 Query: 237 -----ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 +R KS G T DI S+ +A++ L + +RL + + + + ++ Sbjct: 268 ARNEVDRTVKSFGNGLTAPHDIVSASDAKALVYLLSESVAQRLREAR--FRASTVSIGVR 325 Query: 292 FD-DFQQTTQEHVW--PRLNKADLIATARKTWDERRG---GRGVRLVGLHVTLLDP-QME 344 D +++ + TA +R + + + L+P Sbjct: 326 SARDLASYSRQTTLRRATNVTGVVARTAWGLLAANEPLDGEHPLRGLHVRASNLEPCDAP 385 Query: 345 RQLVLG 350 +QL L Sbjct: 386 QQLELA 391 >UniRef50_A4RF27 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4RF27_MAGGR Length = 1201 Score = 336 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 102/374 (27%), Positives = 155/374 (41%), Gaps = 34/374 (9%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FF AV ++ P D P + I++ NYPAR+FGV++ M Sbjct: 384 RYIMHVDFDSFFCAVSLKTAPEYIDKPAVVAHGNGTGSEIASCNYPAREFGVKNGMWMKR 443 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-------- 113 AL+LCP + +LP F AY++AS ++ +S+DEA +D+T V Sbjct: 444 ALELCPTIKVLPYDFPAYEDASRLFYGAILEIGGIVQSVSVDEALIDITTLVLEASSSSG 503 Query: 114 ---------HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A +A ++R I S G+ P +AK+A KP GQ+ + Sbjct: 504 VGVDEGSVWREQEKANELAADLRAEIKRRTGCNVSIGMGPNILMAKVALRKAKPAGQYQV 563 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P E+ L L + +PGV KLE +G+R DV++ L G K G LW Sbjct: 564 KPEEILDILSGLKVEDLPGVAYSIKNKLEEVGVRLVKDVRELSRGRLTTILGPKTGERLW 623 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 E S+GID+ +V + +RKSV E E E + L ELE+RL Sbjct: 624 EYSRGIDKAEVGDQPMRKSVSAEVNWGIRFVSQPEAEEFVMNLCKELEKRLLSEGVKGKG 683 Query: 284 ARQGVKLKF---------------DDFQQTTQEHVWPRLNKADLIATARKTWDERRG-GR 327 + + D + + + A Sbjct: 684 FTMKIMRRSLDSPLDPPKHLGHGKCDVFNKSVAFGIATYSADFIGKEAVSILRSYNFAPG 743 Query: 328 GVRLVGLHVTLLDP 341 +R +G+H++ L+P Sbjct: 744 DLRGLGVHLSRLEP 757 >UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDA2_9FIRM Length = 469 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 172/356 (48%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60 R I+H D++ +A +E NP L+ P+A+GGS+E R G+I N A+K+ +++ Sbjct: 50 RAIVHSDINHCYAQIEEMLNPELKQRPMAVGGSQEERHGIILAKNLHAKKYKIQTGETLD 109 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L +LP + Y+ ++ ++ I+ YT R+E LDEA+LD+T S G A+ Sbjct: 110 EARIKCPQLLILPPDYRRYQRITDQVKAIYREYTDRVEEYGLDEAWLDLTQSQRLFGPAS 169 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA+ I+Q ++ EL LT S G++ K AK+ASD KP+G IT A + L + + Sbjct: 170 QIARTIQQRVYAELGLTISIGLSFNKIFAKMASDFVKPSGFVTITRANFQEKIYPLSVRE 229 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240 + VG + KLEA G+ T GD+ D + + FGK G +L + G D +V Sbjct: 230 LFYVGAATQKKLEAWGITTIGDLASRDRQFMRRYFGKVGEMLHWFALGEDISEVALASEA 289 Query: 241 ---KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF-DDFQ 296 KSVG T D+H E ++ L + RL L + L+ F+ Sbjct: 290 IPVKSVGNSVTAVHDLHTHGEARLVLRVLAESVASRLRD--QGLKGKGIALSLRDIHLFR 347 Query: 297 Q-TTQEHVWPRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLD-PQMERQLVL 349 ++ P +++ A + +R +G+ V L Q QL L Sbjct: 348 WSLQRKRARPTQLAEEILEDAEILLRQAWQNALPLRSIGISVFDLCLDQTGEQLDL 403 >UniRef50_B8GPZ5 DNA-directed DNA polymerase n=2 Tax=Gammaproteobacteria RepID=B8GPZ5_THISH Length = 414 Score = 336 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 167/352 (47%), Gaps = 10/352 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+ VDM+ FFA++E D+P LR P+ I + I T++Y AR GVR+ M Sbjct: 7 RAIVLVDMNAFFASIEQLDHPELRGRPVGITNGQTG-TCIITSSYEARAHGVRTGMRLKE 65 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP + +P R + Y S I T +E S+DEA+LDVT G + Sbjct: 66 ARQLCPDILQIPARPERYARVSTDIMTALESVTPDLEVFSVDEAFLDVTHCQRLLGPPEV 125 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA+ ++ T+ L S G++ K AK A+ +KP+G VI P E A L +P+ ++ Sbjct: 126 IARRVKDTVREASGLPCSVGMSGDKTTAKWAAKQHKPDGLTVIPPWEAAARLAPVPVTEL 185 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE-RLR 240 G+ LE G+ TCGD+ + + L +RFG GR +W +QG D V + Sbjct: 186 CGIAGGIGGYLEQRGVYTCGDMAQLPVSELARRFGNLGRRIWLMAQGRDPTPVETRIAPP 245 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT-- 298 +S+G + M + +E + ++ RL + DLL R + L+ D+ Sbjct: 246 RSLGHGKVMPPGTRERAVILTYLEHMAFKVGTRLR--RHDLLALRFFIGLR-ADYGWIGG 302 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP-QMERQLVL 349 T + L A R+ +E G GV + +T L+P QL L Sbjct: 303 TYRTAVATDDSRQLNALCRRMLNEHWSGEGVSQ--VQITALEPCPAAGQLEL 352 >UniRef50_P04152 Protein umuC n=103 Tax=Gammaproteobacteria RepID=UMUC_ECOLI Length = 422 Score = 336 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 76/364 (20%), Positives = 133/364 (36%), Gaps = 23/364 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 D++ F+A+ E P L P+ + + + G + N A+ GV+ P Sbjct: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNND--GCVIARNAEAKALGVKMGDPWFKQK 59 Query: 64 KLCPH--LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 L + ++ Y + SN + + R+E S+DEA+ D+T V T Sbjct: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKP-----NGQFVITP-AEVPAFLQT 175 +EIR T+ LT G+A K LAK+A+ K G ++ + Sbjct: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVN 235 LP+ + G+G+ + KL+AMG++T D+ D+ + K F +G + Sbjct: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 Query: 236 SERLRKS-VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD 294 K + R+ E I + I +L +K Sbjct: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS--EHQYCRFISTFIKTSP 296 Query: 295 F--------QQTTQEHVWPRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLLDPQMER 345 F + + + P + D+I A ++ D G + G+ + Q Sbjct: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 Query: 346 QLVL 349 QL L Sbjct: 357 QLNL 360 >UniRef50_B6Q7Y5 DNA-directed polymerase kappa, putative n=2 Tax=Leotiomyceta RepID=B6Q7Y5_PENMQ Length = 647 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 119/358 (33%), Positives = 175/358 (48%), Gaps = 20/358 (5%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 ++HVD D FFAAVE D P L+ +P+A+G +GV++T NY ARKFG RS M +A Sbjct: 116 IVVHVDCDAFFAAVEELDRPELKHLPMAVG-----KGVLTTCNYVARKFGCRSGMAGFVA 170 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDS-VHCHGSATL 121 KLCP L +P ++ Y + IR IF Y E S+DEAYL++T Sbjct: 171 KKLCPDLICIPQNYEKYTAKAEEIRAIFVEYDPCFESASIDEAYLNITAYCDENDMDPQE 230 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT--PAEVPAFLQTLPLA 179 Q++R I +E ++T SAG+A LAKIAS+ NKPNGQF I + AF++ LP+ Sbjct: 231 AVQQMRSRIADETKITVSAGIAANTKLAKIASNQNKPNGQFYIPSEREAIMAFVKDLPVR 290 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQ-GIDERDVNS-- 236 K+ G+G+V +L A+G+ TCG + L + FG+ + G+ + Sbjct: 291 KVNGIGRVFERELRAIGIETCGQIYPH-RASLKRLFGEKAFHFLMQCHLGLGRTKIQPAV 349 Query: 237 ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 + RKSVG E T +E I A + EL R L + +K+K F+ Sbjct: 350 DYERKSVGTESTFSE-ISDPDAIRAKLRWAADELARDL--SRTQFKGRTLVLKIKLHTFE 406 Query: 297 QTTQEHVWPRLN--KADLIATARKTWDERR---GGRGVRLVGLHVTLLDPQMERQLVL 349 T++ P+ DL + + + +RL+GL T L + L Sbjct: 407 VYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHLVSTKKAGLDF 464 >UniRef50_Q7NAR2 UmuC/DinP-like n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAR2_MYCGA Length = 405 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 166/346 (47%), Gaps = 8/346 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I H+D D FFA+VE NP + P+ +G + ++S+ANY ARKFGVRSAMP Sbjct: 11 KTIFHIDFDAFFASVEENFNPEYNNKPLVVGS-KSNGSIVSSANYIARKFGVRSAMPIFQ 69 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRY-TSRIEPLSLDEAYLDVTDSVH--CHGS 118 A KLCP L + + Y+ S ++ + ++++E S+DE Y+DVTD + S Sbjct: 70 AKKLCPSLIIAEVDYPKYERVSAYVFSYLRDFVSNKMEVASIDECYMDVTDILEKNSEIS 129 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 A+ +A++I++ I+ QLT S G++ FLAK+ASD NKPNG + I P E+ L L + Sbjct: 130 ASDLAKKIQKQIYELTQLTVSIGISSNLFLAKMASDQNKPNGVYEIWPDEIEEKLWPLEI 189 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKC-DLVMLLKRFGKFGRILWERSQGIDERDVNSE 237 K+ +G L + ++ G+ + + +L+ F + + G V+ E Sbjct: 190 KKMYLIGSKKIPLLNQLNIKNIGNFAQFENKELLIDIFKNMYWDHYNHAHGKGSDFVDYE 249 Query: 238 RL-RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 R RKS+ V + + + + + L+ ++ RL +LL V ++ + + Sbjct: 250 RNSRKSISVSKNIRHKVSDYESLLKLFNDLFDDVYSRLK--NHNLLAKNISVSIRTEKVR 307 Query: 297 QTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQ 342 + K A ++ + V + + + + Sbjct: 308 SLSFSFKQYSDKKTLFYNKAIDLFERLHNNQLVANISISFGNITNK 353 >UniRef50_A4QFK8 DNA polymerase IV n=28 Tax=Actinomycetales RepID=DPO4_CORGB Length = 467 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 107/348 (30%), Positives = 160/348 (45%), Gaps = 8/348 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R ++H+DMD FFA+ E P LR P+ +GG R V + A+Y ARKFG RSAMP Sbjct: 3 RWVLHIDMDAFFASCEQLTRPTLRGRPVLVGGVSGRGVV-AGASYEARKFGARSAMPMHQ 61 Query: 62 ALKLCP-HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSA 119 A ++ R Y AS + +I + +E LS+DE +++ V Sbjct: 62 AKARVGFGAVVVTPRHIVYSAASRRVFQIVEKRAGIVERLSIDEGFMEPEALVGATPEEV 121 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 A+E+R I L +S G K +AKI S KP+G FV+ + L LP+ Sbjct: 122 KQWAEELRAEIKEVTGLPSSVGAGSGKQIAKIGSGEAKPDGVFVVPVDKQHDLLDPLPVG 181 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSER 238 + GVG V+ +KL +MG+ T GD+ + G G LW ++GID+R V Sbjct: 182 ALWGVGPVTGSKLASMGVETIGDLAALTQKEVEISLGATIGISLWNLARGIDDRPVEPRA 241 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 K + E T +D+ + +A I R RRL K VKL+ DF+ Sbjct: 242 EAKQISQEHTYEKDLLTRQQVDAAIIRSAEGAHRRLLKDGRG--ARTVSVKLRMADFRIE 299 Query: 299 TQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 ++ + + A L ATA + +RLVG+ + L+ + Sbjct: 300 SRSYTLSYATDDYATLEATAFRLARYPGEVGPIRLVGVSFSGLEESRQ 347 >UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RF31_9FIRM Length = 413 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 172/356 (48%), Gaps = 10/356 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H D++ +A +E P LR++ +A+GGS R R G+I N A++ GV++ Sbjct: 3 RVILHSDINHCYAQIEEMKFPQLREVCMAVGGSERSRHGIILAKNDKAKECGVKTGESLR 62 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 A CP L ++P ++ Y S ++EI+ Y+ ++E LDEA++DV++S GS Sbjct: 63 EAFVKCPQLCIIPPNYEEYVYYSEKVKEIYQAYSDKVESFGLDEAWIDVSESTKLFGSGY 122 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 IA EI++ + +EL L+ S G++ K AK+ SDM K G IT L LP+ Sbjct: 123 EIATEIQKRVKDELGLSVSIGISYNKVFAKMGSDMKKNMGLVEITRTNFRDMLWPLPIEH 182 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV---NSE 237 + VGK +A KL + T G++ + V L + FGK G ++W + G D +V N + Sbjct: 183 LFYVGKATAKKLRQYSIVTIGELAQLPRVWLKEHFGKMGELVWWFANGQDISEVAFHNQK 242 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 KS+G T D+ + E + + L + RL + L + L+ + Sbjct: 243 EEVKSIGNGITTPRDLCTFEEAKIVFYVLAESVASRLRE--QGLQGNVISISLRNKYLES 300 Query: 298 TTQEHVWP--RLNKADLIATARKTWDERRGGR-GVRLVGLHVTLLDP-QMERQLVL 349 T++ ++++ E +R V + ++ + + RQL L Sbjct: 301 ITRQCKIDKATNLASEIMEHILLLLKENYDFHIPLRSVAVSISGIQYMECYRQLNL 356 >UniRef50_Q6F1D8 DNA polymerase IV (PolIV) n=1 Tax=Mesoplasma florum RepID=Q6F1D8_MESFL Length = 370 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 172/365 (47%), Gaps = 20/365 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I+H+DMD FFA+ E + L++ P+ + + + R +I A+Y ARK+G+++ P Sbjct: 4 KVILHLDMDAFFASCEQAHDKTLKNKPVVVARNND-RSIIVAASYDARKYGIKAGTPIFE 62 Query: 62 ALKLC-PHLTLLPGRFDAYKEASNHIREIF-SRYTSRIEPLSLDEAYLDVTDSVHCHGSA 119 A +L L + G D Y+E S I + ++T ++E L +DE ++D T+ +G+ Sbjct: 63 AKQLAYGELIIKEGNRDLYEEYSERIFNLIKEQFTYKVEVLGIDECFIDATNIWEKYGNV 122 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLA 179 + I+ ++ E LT S G + + +K+ SDM KPNG +IT + + Sbjct: 123 QNLCLAIQAAVYQETGLTCSIGASFTRLFSKMGSDMKKPNGITIITKENFKTLIWNKSIK 182 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS-ER 238 + GVG S K+E + ++T D K D ++ FG G+ ++++ GI ++ E Sbjct: 183 DVIGVGSSSLEKMELLNVKTVNDFVKLDEKIIADSFGLSGQKMYQKLHGIKNDEIAYWET 242 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDD---- 294 KS+ E+T + + E I+ L ++ L K ++L + +KF + Sbjct: 243 SVKSISKEKTFDKKNMAIEDIEEILFNLAEKVV--LRMQKNNILAKTVTLSIKFYNQEIN 300 Query: 295 ------FQQTTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME-- 344 ++ T + + L + + D+ G + L+G+ VT L + + Sbjct: 301 FDKKEQKKRRTYSETFNEYTDSLEKLYSRVKVILDDIYDGESISLIGIGVTNLIEKDKLV 360 Query: 345 RQLVL 349 +Q Sbjct: 361 KQQSF 365 >UniRef50_A9UNE7 GH11153p (Fragment) n=8 Tax=Drosophila RepID=A9UNE7_DROME Length = 1012 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 109/410 (26%), Positives = 186/410 (45%), Gaps = 66/410 (16%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR----------------------- 38 R ++H+DMDCFF +V +R P LR +PIA+ S+ Sbjct: 290 RYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELELFAQR 349 Query: 39 ------------------------GVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPG 74 I++ +Y AR+ G+R+ M G ALKLCP L +P Sbjct: 350 FEHHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPY 409 Query: 75 RFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLIAQEIRQTIFNE 133 F+ YKE + + + ++YT IE +S DE ++++TD H +RQ ++++ Sbjct: 410 DFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSK 469 Query: 134 LQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA-EVPAFLQTLPLAKIPGVGKVSAAKL 192 SAGVA K LA++A+ KPNGQF++ + ++ A++ + L +PGVG + KL Sbjct: 470 TGCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKL 529 Query: 193 EAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAE 251 + GL CGDVQ L + K G K G+ L++ +GID+R + E++RK+V E Sbjct: 530 KQAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGI 589 Query: 252 DIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEH--------- 302 + ECE + +L E+ +RL +++ + ++ + T ++ Sbjct: 590 RFTNSVECEQFLCQLSEEVTKRLVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDII 649 Query: 303 ------VWPRLNKADLIATARKTW-DERRGGRGVRLVGLHVTLLDPQMER 345 + + + D +R +G+H+T L+ E Sbjct: 650 NKSSLIKYATDDVNVITTVVLDLMKDADIPPDELRGLGIHLTRLEDANEV 699 >UniRef50_B6K5W3 DNA polymerase kappa n=2 Tax=cellular organisms RepID=B6K5W3_SCHJY Length = 532 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 114/360 (31%), Positives = 174/360 (48%), Gaps = 27/360 (7%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D F+A+VE + PA + P+A+G GV+ TANY ARKFGVRSAMP + Sbjct: 115 RIIVHVDCDAFYASVEELEKPAYKTKPMAVGQ-----GVLCTANYCARKFGVRSAMPEFI 169 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---S 118 A +LCP+L +LP R Y+E S I +I Y + S+DEAYLD+TD + H + Sbjct: 170 ARQLCPNLIVLPLRMMKYQEKSAEIAKILQEYDPNMCKASVDEAYLDLTDYLTKHNEEET 229 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTL 176 + + +RQT+ + +T S G+ LAKIAS+M KPN QF I T + F+ TL Sbjct: 230 VEAVVEHLRQTVAEKTGITVSCGIGANLMLAKIASNMRKPNDQFSIGRTREAILEFMDTL 289 Query: 177 PLAKIP--------GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQ 227 P K+ G+G+V +L ++ + CGD+ + L F K + L + Sbjct: 290 PCRKVYLELNHNVNGIGRVLEQELSSLNVHNCGDILR-RKGYLYYVFQEKSFQNLLSYAL 348 Query: 228 GIDERDVNSE--RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIAR 285 GI V RKS+G E T + + +++L + + + +L+ Sbjct: 349 GISNNVVKPTDASNRKSIGNEMTFSIPMGSEKTISQKLKQLCFSVSETMK--QRNLVGNS 406 Query: 286 QGVKLKFDDFQQTTQEHVWPRLN--KADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM 343 +KLK F+ T++ + + VRL+G+ +T L Sbjct: 407 VVLKLKTTSFEVRTRQTNLNTYTNESDIIYKYVLQLL-SYELPVQVRLLGVRMTKLQDAS 465 >UniRef50_B0UY97 Novel protein similar to vertebrate REV1 homolog (S. cerevisiae) (REV1) n=3 Tax=Danio rerio RepID=B0UY97_DANRE Length = 1268 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 187/415 (45%), Gaps = 80/415 (19%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAI-------------------------------- 31 ++HVDMDCFF +V +R P L P+A+ Sbjct: 452 VLHVDMDCFFVSVGIRHRPDLIGKPVAVTSNRGPGRVAQRPGANPQLEFQYYQNKQKHYR 511 Query: 32 ---------------GGSRERRGV-----------ISTANYPARKFGVRSAMPTGMALKL 65 G GV I++ +Y AR+ GVR+ M G A +L Sbjct: 512 KEKTDGDLEMTPSPQDGEVPSNGVHEDLAALSMAEIASCSYEARQAGVRNGMFFGRAKQL 571 Query: 66 CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLIAQ 124 CP L +P F AYKE + + EI + YT IE LS DEA +D T + G S +A+ Sbjct: 572 CPDLQSVPYDFHAYKEVALAMYEILASYTHNIEALSCDEALVDATALLVELGVSPDELAR 631 Query: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV 184 IR+ I + AS G++ LA++A+ KP GQ+++ EV F++ P++ +PGV Sbjct: 632 SIREDIKEKTGCCASVGMSSNILLARMATRKAKPKGQYLLRSEEVDDFIRDQPVSSLPGV 691 Query: 185 GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSV 243 G+ ++KL ++G+ TCGD+Q+ L L + FG + G+ L+ +G+D+R V SE+ RKSV Sbjct: 692 GRSMSSKLTSLGVSTCGDLQQLSLSQLQREFGPRTGQTLFRFCRGLDDRPVRSEKERKSV 751 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKL------------K 291 E E E+ + L E+++RL L R +K+ K Sbjct: 752 SAEMNYNIRFTQVEEAESFLNNLSMEVQKRLE--GAGLRGRRVTLKVMMRKPGAPVEPAK 809 Query: 292 FDDF---QQTTQEHVW--PRLNKADLIATARKTWDERRGG-RGVRLVGLHVTLLD 340 + + + P + + + A K + + + +R VGL V LD Sbjct: 810 YGGHGICDNFARSVLLAQPTDSGRVIASEAIKLFHAMKLNVKDMRGVGLQVQQLD 864 >UniRef50_UPI0000D862D7 hypothetical protein CIMG_01093 n=1 Tax=Coccidioides immitis RS RepID=UPI0000D862D7 Length = 1021 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 145/311 (46%), Gaps = 18/311 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R I+HVD D FFAAV +R NP L D P+AI I++ NYPAR FG+++ M Sbjct: 348 RYILHVDFDSFFAAVSIRKNPELADKPVAIAHGTGAGSEIASCNYPARAFGIQNGMWMQG 407 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT----------- 110 AL++CP L +LP F AY++AS E ++ +S+DEA +D+T Sbjct: 408 ALQMCPDLKVLPYDFAAYEDASRKFYEAILDIDGIVQSVSIDEALVDITKLCLEAGGSEG 467 Query: 111 ------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 A IAQ +R ++ + S G+ AK+A KP GQF + Sbjct: 468 KGISEGSIWKEQAKADEIAQTLRDSVKQKTGCDVSVGIGGNILQAKLALRKAKPAGQFQL 527 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILW 223 P V F+ L + ++PGV AKLE +G++ D+++ L G K G LW Sbjct: 528 KPEVVLEFIGELTVQQLPGVAYSLGAKLEELGVKFVKDIRELSRERLTSNLGPKTGAKLW 587 Query: 224 ERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLI 283 + ++GID DV RKSV E ++ E ++ L EL RRL + Sbjct: 588 DYARGIDNADVGDVAPRKSVSAEINWGIRFVTQAQVEEFVQSLCDELHRRLMENGVKGKQ 647 Query: 284 ARQGVKLKFDD 294 + + D Sbjct: 648 LTMRIMRRALD 658 >UniRef50_Q5N669 DNA polymerase V n=9 Tax=Bacteria RepID=Q5N669_SYNP6 Length = 418 Score = 332 bits (853), Expect = 9e-90, Method: Composition-based stats. Identities = 74/357 (20%), Positives = 146/357 (40%), Gaps = 18/357 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 +D + F+ + E +P L+ P+ + + + G + + A+ G+ +P Sbjct: 2 FALIDCNNFYVSCERVFDPKLQGQPVVVLSNND--GCVIARSAEAKALGIPMGIPFFKVK 59 Query: 64 KLC--PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 L + + + Y + S + + + +E S+DEA+LD + Sbjct: 60 DLISQHQIQVFSSNYALYGDMSQRVMQTLATLCPDLEVYSIDEAFLDFSG---FQAQPLQ 116 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNG-QFVITPAEVPAFLQTLPLAK 180 Q IRQT+ + S G+A K LAK+A+ + K NG FV++P++V A L TLP+ + Sbjct: 117 QGQLIRQTVGQWTGIPVSIGIAATKVLAKVANKLAKQNGGVFVLSPSKVQAVLMTLPVEE 176 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS-ERL 239 + G+ +L A+ + T ++Q +L ++ ++F + +G + S Sbjct: 177 VWGISSRWGQRLRALNISTAAELQATNLNLMRQQFNIVLERIVRELRGESCLPLESIVNP 236 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ--- 296 ++S+ V R+ + I E + + L L + V ++ + FQ Sbjct: 237 QQSLVVSRSFGQPITTLPELKQAVATYVSRAAEELRS--RQLTTSYLTVFVRTNRFQENY 294 Query: 297 ---QTTQEHVWPRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQMERQLVL 349 +Q + P + L+ A + + GR + G+ L Q L Sbjct: 295 EAPNASQGLLTPTNHTGKLLEIALRCTESLYQPGRAYKKAGVLFQGLGSAQSIQQSL 351 >UniRef50_A1SN18 DNA-directed DNA polymerase n=13 Tax=Actinomycetales RepID=A1SN18_NOCSJ Length = 362 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 161/353 (45%), Gaps = 13/353 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGG--SRERRGVISTANYPARKFGVRSAMPTG 60 ++HVD+D F AAVE+ P L P+ +GG RGV++TA+Y AR FGV S MP Sbjct: 9 WVLHVDLDQFIAAVEVLRRPELAGRPVVVGGRGDPTERGVVATASYEARAFGVGSGMPLR 68 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRY----TSRI-EPLSLDEAYLDVTDSVHC 115 +A + CP LP +AY AS + + E L DEA+L + Sbjct: 69 VAARKCPDAVFLPVDKEAYDAASAQVMTTLRGLEWGGVPVVLEVLGWDEAFLAAGEDHGE 128 Query: 116 HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 175 G+ A+ +R + E +L S G+ K AKIA+D KP G + +T A+ + Sbjct: 129 LGNPREFAEHLRAEVLAETRLHCSVGIGDNKLRAKIATDFGKPRGVWQLTEADWFPVMGE 188 Query: 176 LPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDV 234 P + G+G +A KL A+G+ T + + D +L G G +G+D V Sbjct: 189 RPTTALWGIGARTAKKLSALGIDTVEQLARSDARVLAAELGPTMGPWFHRLGRGVDTSPV 248 Query: 235 N-SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 + + + ++ G E T ED+ W + L + + + AR G+K+++ Sbjct: 249 DATPWVPRAHGREETYQEDLEDWDRVTEEVRALTRRVVDDI--DREGRPAARVGIKVRYR 306 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344 F ++ P + A L A + GR VRL+G+ + ++DP Sbjct: 307 PFSTVSRSLTLPEPSNDPAVLEDAAVSLLERVERGRPVRLLGVRLEMVDPPEG 359 >UniRef50_A0QHM7 DNA polymerase IV 1 n=8 Tax=Corynebacterineae RepID=A0QHM7_MYCA1 Length = 458 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 103/352 (29%), Positives = 154/352 (43%), Gaps = 8/352 (2%) Query: 5 IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64 +H+DMD FFA+VE P LR P+ +GG R V + A+Y AR FG RSAMP A + Sbjct: 2 LHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVV-AGASYEARVFGARSAMPMHQAKR 60 Query: 65 LC-PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH-GSATLI 122 L +LP R Y AS + + +E LS DE + + Sbjct: 61 LVGVSAVVLPPRGVVYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGAPAEDVEAF 120 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 +++R+ + + L AS G K +AKIAS + KP+G V+ AE L LP+ ++ Sbjct: 121 CEQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKPDGVRVVRRAEERELLGGLPVRRLW 180 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF-GRILWERSQGIDERDVNSERLRK 241 G+G V+ KL +G+ T G++ G G L ++GID+R V K Sbjct: 181 GIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAERAEAK 240 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 + E T A D+ + IE + RL ++ VKLK D T+ Sbjct: 241 QISSESTFAADLTTLEQLREAIEPIAEHAHHRL--LRDGRGARTVTVKLKKSDMSTLTRS 298 Query: 302 HVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P L+ AR+ + R +RL+G+ + L + L L Sbjct: 299 ATLPYATTEAAALVGVARRLLLDPREIGPIRLLGVGFSGLSEVRQESLFPDL 350 >UniRef50_B7QCT1 Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ixodes scapularis RepID=B7QCT1_IXOSC Length = 904 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 172/392 (43%), Gaps = 47/392 (11%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR----------------------- 38 + ++H+DMDCFF +V +R P L+ P+A+ + Sbjct: 257 KVLMHIDMDCFFVSVGLRSRPHLKGKPVAVCHGKNGGIQPSSSHSRASDVPGTSGSGADG 316 Query: 39 ------GVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSR 92 +++ +Y AR GVRS M G A +LCP+L +P F++Y E S + + + Sbjct: 317 KGLMSMSEVASCSYEARDAGVRSGMFLGRAKQLCPNLVAIPYEFESYSEVSKILYDTVAS 376 Query: 93 YTSRIEPLSLDEAYLDVTD-SVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKI 151 YT IE +S DE Y DVT + A +R+ I + TAS G+ P A++ Sbjct: 377 YTLDIEAVSCDELYADVTKVLQEAECTPNDFASFLRKEIEEKTCCTASVGLGPNMLAARV 436 Query: 152 ASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVML 211 A+ KPNG ++ +E+ F + + + +PGVG ++L MG+ TC +Q + L Sbjct: 437 ANRSAKPNGHRFVSTSELLEFFKAVAVKHLPGVGYRLQSQLTDMGIETCEQLQAVSMETL 496 Query: 212 LKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPEL 270 +FG K G +L++ ++G D++ + ++RKSV E ++ I +L E+ Sbjct: 497 KSKFGVKTGTLLFQHARGSDDKVLQFNKVRKSVSAEVNYGIRFKEANDMNKFIGQLSEEV 556 Query: 271 ERRLAKVKPDLLIARQGVKLK---------------FDDFQQTTQEHVWPRLNKADLIAT 315 E+RL + +K++ D + + + + A + Sbjct: 557 EKRLREAGVQGRAVSLKLKVRQKDAPLNPTKFMGHGMCDNITKSVQLLAATSSAAAISRE 616 Query: 316 ARKTWDE-RRGGRGVRLVGLHVTLLDPQMERQ 346 + +R VG+ V L+P+ Q Sbjct: 617 CCNLAAQLHLVPSDIRGVGIQVGRLEPRPGVQ 648 >UniRef50_B9LT67 UMUC domain protein DNA-repair protein n=3 Tax=Halobacteriaceae RepID=B9LT67_HALLT Length = 476 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 121/385 (31%), Positives = 174/385 (45%), Gaps = 41/385 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR---GVISTANYPARKFGVRSAMP 58 R + HVDMDCF+A+ E P L D P+ +G E G ++TA+Y AR FGV SAMP Sbjct: 19 RIVFHVDMDCFYASCERLRRPELADEPLVVGMGYEAGEAIGAVATASYEARAFGVESAMP 78 Query: 59 TGMALKLCPHLT-----------------LLPGRFDAYKEASNHIREIFSRYTSRIEPLS 101 AL L P LP D YKE ++ ++ + + +S Sbjct: 79 ISEALDLLPRRVNADPDDPDAPDPDEAGRYLPVDLDFYKEVASDVKTVLRDCADVLREVS 138 Query: 102 LDEAYLDVT---------------DSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVK 146 +DEAYLDVT A A+ I++ I E + AS GVAP Sbjct: 139 VDEAYLDVTDRTAWDAAGGESTATGPAETRTLAEGYARHIKERIEREAGVPASVGVAPNM 198 Query: 147 FLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKC 206 AKIASD +KP+G V+ P EV +FL +LP A+I GVG V+ L +G+ T GD+ Sbjct: 199 STAKIASDADKPDGLVVVPPGEVESFLASLPTAEIHGVGPVTERTLAELGIETAGDLAAA 258 Query: 207 DLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERL 266 D L G GR L+ R++G D+R+V L KS+ E +++ + L Sbjct: 259 DPDRLADELGDRGRELYRRARGDDDREVTPTGLPKSLSRESSLSA-TADEERKRETVRAL 317 Query: 267 YPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVW--PRLNKADLIATARKTWDERR 324 ++ RR + L G+K ++ T+ P + + + A E Sbjct: 318 AADVARRARE--RGCLYRTIGIKAVEPPYEVNTRARSLPGPVDDPDLVESVALDLLGEFA 375 Query: 325 GGRGVRLVGLHVTLLDPQMERQLVL 349 G VR +G+ V+ LD Q L Sbjct: 376 -GDRVRKLGVRVSKLDFAESDQATL 399 >UniRef50_B0R4P0 DNA polymerase IV n=7 Tax=Halobacteriaceae RepID=DPO4_HALS3 Length = 411 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 163/364 (44%), Gaps = 19/364 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS---RERRGVISTANYPARKFGVRSAMP 58 R ++HVDMDCF+A+ E R PALR P+ +G + G ++TA+Y AR++GV SA Sbjct: 16 RIVVHVDMDCFYASCERRREPALRGAPVVVGMGYEPDQTVGAVATASYEAREYGVESAQA 75 Query: 59 TGMALKLCPH----------LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLD 108 AL+ P P Y+ S + EI + +S+DEAYLD Sbjct: 76 ISAALERLPRKADAPDASAAGYYRPVDMAYYESVSESVSEILHGLGDPVREVSIDEAYLD 135 Query: 109 VTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE 168 VTD A + I+Q I + + AS G+AP AK+ASD KP+G V+ P Sbjct: 136 VTD-RTAWDVAAGFGRHIKQRIARSVGVPASVGIAPDMSTAKLASDHEKPDGLVVVPPES 194 Query: 169 VPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQG 228 V +FL L +A + GVG V A L G+ T G++ D +L FG+ GR R++G Sbjct: 195 VQSFLAPLDVADLHGVGPVHARALRERGIETVGELADADPYVLEAAFGERGREFHRRARG 254 Query: 229 IDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV 288 D R V KS+ E + + L + R + + GV Sbjct: 255 ADSRPVEPRGKPKSLSRESSFDGATESFDRVREQAAALSGAVADR--ASRTNASYRTIGV 312 Query: 289 KLKFDDFQQTTQ--EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQ 346 K+ + T+ P + A L A ++ DE G VR VG+ V+ L Q Sbjct: 313 KVVTPPYDVQTRAESLPGPVDDPALLEAVSQSLLDEFE-GAAVRKVGVRVSNLVFSEREQ 371 Query: 347 LVLG 350 L Sbjct: 372 ATLA 375 >UniRef50_B0D2Y9 Predicted protein n=3 Tax=Agaricales RepID=B0D2Y9_LACBS Length = 1152 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 93/381 (24%), Positives = 165/381 (43%), Gaps = 39/381 (10%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTAN------YPARKFGVRS 55 R I+H D DCFF + + P + P+ + S+ +G S+ + Y ARKFG+++ Sbjct: 381 RVIMHCDFDCFFVSAGLVSRPEHKGKPVVVCHSQGTQGGASSTSEIASSSYEARKFGIKN 440 Query: 56 AMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC 115 M A KLCP + +P F+ YK+ S + + ++ +S+DEA +DVT +V Sbjct: 441 GMSLQQARKLCPGIITIPYEFERYKQFSLLFYTVLMSHADDLQAVSVDEALIDVTSTVTQ 500 Query: 116 -----------HGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI 164 H A A+ IR I S G++ LA++A+ KP G F + Sbjct: 501 LRSHVGLEGSPHDPAKDFAETIRAQIRKATSCEISIGISHNILLARLATRRAKPGGSFHL 560 Query: 165 TPAEVPAFLQTLPLAKIPGVGKVSAAKL-EAMGLRTCGDVQKCDLVMLLKRFGK-FGRIL 222 P +VP FL L +A + G G+ + K E +G+ T G++ K +L+ GK G L Sbjct: 561 VPLDVPDFLAPLDIADLHGFGRSTKQKAQEKLGVTTLGELAKKSKGVLIDALGKATGETL 620 Query: 223 WERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLL 282 ++ +GID++ + S++ RKSV E + + EA + ++ E+++RL + Sbjct: 621 YDAVRGIDDKKLESDKPRKSVSCEINYGIRFENNEQAEAFVHQMAAEVKKRLDAIDMVGR 680 Query: 283 IARQGVKLKFDDFQQ-------------TTQEHVW------PRLNKADLIATARKTWDER 323 V + ++ ++ + A + Sbjct: 681 SITMKVMKRDPTAPVEPPKFLGHGSCDLFNKQIPLIGPGGRATSDEQIIGEHAWRLLKSF 740 Query: 324 R-GGRGVRLVGLHVTLLDPQM 343 + +R +G+ V L+ Sbjct: 741 NFDPKELRGLGIQVQKLESAS 761 >UniRef50_B2A4V8 DNA-directed DNA polymerase n=5 Tax=Clostridia RepID=B2A4V8_NATTJ Length = 421 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 152/344 (44%), Gaps = 14/344 (4%) Query: 3 KIIHVDMDCFFAAVEMRDNP------ALRDIPIAIGGSRE-RRGVISTANYPAR-KFGVR 54 I H+D++ + + E LR +P +GG + RRG++ + PA+ KF ++ Sbjct: 5 IIFHIDVNSAYLSWEAAYRLQKGAQLDLRQVPSVVGGDSQKRRGIVLAKSIPAKSKFKIQ 64 Query: 55 SAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114 + A K CP L ++P +D Y SN + E+ Y+ I+ S+DE +LD T+ Sbjct: 65 TGELLSSARKKCPDLFVVPPNYDLYLRCSNAMVELLYEYSPFIQRYSVDEVFLDFTNMEK 124 Query: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQ 174 G A I+ + EL T + G+ P K LAK+AS+ KP+ + P E+P L Sbjct: 125 QFGDYLTAANTIKARVKEELGFTVNIGIGPNKLLAKLASEFKKPDRVHTLFPEEIPTKLW 184 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDV 234 LP+ ++ VG+ + KL G+ T G++ K L G ++W+ + GI+E V Sbjct: 185 PLPVGELFMVGRATEKKLLDRGITTIGELAKTPRNKLKLWLKSHGLLIWDFANGIEESSV 244 Query: 235 NSER-LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFD 293 E K +G T E++ + L ++ RL + +K Sbjct: 245 RPEGFPMKGLGNSTTTPENVADKETARLWLLSLTEKVSSRLRDA--HCYAQVVNLSIKTS 302 Query: 294 DFQQTTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGL 334 F ++ P + + T +K +E +R +G+ Sbjct: 303 QFISYGKQKKLLNPTNSTKVIFETGKKLLNELWDEEEPLRHIGI 346 >UniRef50_A0D236 Chromosome undetermined scaffold_35, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0D236_PARTE Length = 591 Score = 330 bits (848), Expect = 4e-89, Method: Composition-based stats. Identities = 106/350 (30%), Positives = 173/350 (49%), Gaps = 13/350 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R H DMD F+ A E+ D P L+D P+A+G ++STANY ARKFGVRSAMP + Sbjct: 86 RIWAHFDMDMFYVACELLDKPELKDKPVAVGQ-----TIVSTANYVARKFGVRSAMPGFV 140 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HGSAT 120 A KLCP + +P F+ YK SN I +Y +E + LDEA LD+T+ ++ Sbjct: 141 AKKLCPEIIFIPCHFEKYKSVSNIFMTILKKYDDNLESMGLDEANLDLTEYINNSQEDPA 200 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPA--EVPAFLQTLPL 178 ++ + IR+ I QLTAS GV P K +AK+AS++NKPNG V+ + V FL+ LP+ Sbjct: 201 ILCENIRKDILLATQLTASCGVGPNKMIAKLASEINKPNGLHVVEQSATAVLNFLEKLPI 260 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 KIPG+G ++ L + TC DV+ + + K ++ G+ Sbjct: 261 RKIPGIGNITEQILSGLNFNTCKDVRDRADELYVIFTPKTFEYIFYSCWGVARNYHVEFE 320 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 + S+ +RT + I E E ++ + +L + + + + +K F+ Sbjct: 321 DQHSISCQRTFSS-ISTQREFEDKVDYIAEKLAEEMQSEEK--VGNHLTLIIKTSKFEIR 377 Query: 299 TQEHVWPRLNKA--DLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQ 346 ++ + + ++ + +RL+GL ++ L + + Q Sbjct: 378 SKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLKMSSLANEKQIQ 427 >UniRef50_A5EBX2 DNA polymerase IV (Pol IV 3) n=2 Tax=Bradyrhizobiaceae RepID=A5EBX2_BRASB Length = 330 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 125/353 (35%), Positives = 177/353 (50%), Gaps = 53/353 (15%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKIIH+DMD F+A+VE RDNP LR P+A+GGS+E RGV++ A+Y AR FGVRSAM + Sbjct: 26 RKIIHIDMDAFYASVEQRDNPGLRGKPVAVGGSKE-RGVVAAASYEARAFGVRSAMRSVT 84 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A + + + AT Sbjct: 85 AKRNMQDIPV-----------------------------------------------ATD 97 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 IA IR I E LTASAG++ KFLAK+ASD KPNGQFVITP PAF++ LP+ K Sbjct: 98 IATAIRAKILRETGLTASAGISYNKFLAKLASDHRKPNGQFVITPKMGPAFVEQLPVGKF 157 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241 G+G + AK+ +G+ T D++ + FGK G + S+G+DER V + R+RK Sbjct: 158 HGIGPATNAKMNRLGIFTGMDMRNQTRGFMNAHFGKAGAYYYWVSRGVDERPVRANRIRK 217 Query: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301 SVG E T + D+ ++ A +E L ++ +K+KF DFQ T+ Sbjct: 218 SVGAENTFSGDLTGFAALVAELEPLIDKVWGHCESTGN--FGRTVTLKVKFSDFQIITRS 275 Query: 302 HVW--PRLNKADLIATARKTWD-ERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 P ++ DL + E + VRL+G+ ++ L + E + L L Sbjct: 276 RSVASPISSRQDLNRLTLGLLECEMPIPKSVRLLGVSLSSLQAEAEGEPQLDL 328 >UniRef50_A2DLM9 ImpB/MucB/SamB family protein n=1 Tax=Trichomonas vaginalis RepID=A2DLM9_TRIVA Length = 592 Score = 329 bits (845), Expect = 9e-89, Method: Composition-based stats. Identities = 118/356 (33%), Positives = 186/356 (52%), Gaps = 12/356 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + +H D+D FFA+ E +P+L A+GG + GV+ST +Y ARKFGVRS M + Sbjct: 86 KTYLHADLDSFFASCEALRDPSLVGTAFAVGGEI-KHGVLSTTSYEARKFGVRSGMAVFI 144 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHC-HGSAT 120 AL+LCPHL ++ ++ YK S+ +R+IF +Y S LDEA LD+++ V + A Sbjct: 145 ALQLCPHLKIVESHYELYKHYSSIVRKIFEKYDSHYISFGLDEASLDLSEHVKLDYEKAM 204 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPL 178 IA+ I++ +F + +LT S G+A LAKIASD+NKPNG F I F+ LP+ Sbjct: 205 DIAKNIQKEVFEQTKLTISCGIAITPQLAKIASDVNKPNGIFEIKHDRESTLDFISKLPI 264 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 KIPG+G V+ L +G+ T DV + + F + ++ GI+ + R Sbjct: 265 RKIPGIGGVAEQLLHGIGITTMKDVMDKKTDLWICMRPLFCQFIFSACLGINRQTFGVTR 324 Query: 239 LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQT 298 ++S+ ERT + + E IIE+L E+ + L ++ ++L VK K FQ Sbjct: 325 HQQSISKERTFD-NTNDRVFMEEIIEKLCMEVCKLLQEM--NVLCRNVTVKFKDSSFQTI 381 Query: 299 TQEHVWPRLNKA--DLIATARKTWDERRGGR--GVRLVGLHVTLL-DPQMERQLVL 349 T+ + D+ K ++ R RL+G+ L P+ +RQ+ + Sbjct: 382 TRCLSFDHDTNKIFDIFCACVKILNDELRSRYVKYRLLGVRCGQLSTPRAKRQISI 437 >UniRef50_C1A9Y5 DNA polymerase IV n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9Y5_GEMAT Length = 441 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 166/367 (45%), Gaps = 21/367 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIP--IAIGGSRERRGVISTANYPARKFGVRSAMPT 59 R+I+ VD D FF AV +++P + +GG RGV+ +A+Y R +GVRSAMP Sbjct: 10 RRILLVDADAFFVAVARQEDPEGAGKATLLIVGGRPGSRGVVCSASYECRAYGVRSAMPI 69 Query: 60 GMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-- 117 ALKLCP +P S I+ + +++ ++P S+DE Y D+ + +G Sbjct: 70 SRALKLCPQAMCVPVPRHVCGTRSREIQAVLAQFAPVVQPSSIDEWYCDLGGTEALYGHE 129 Query: 118 SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKP------NGQFVITPAEVPA 171 A+ +R+ +F L S G + +AK+A ++ KP G + P Sbjct: 130 PLEETARRMREAVFAATGLRVSIGGGTSRLVAKMAVEVAKPKPGTGATGVRCVPPGTEAE 189 Query: 172 FLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGID 230 FL LA +P VG A KLE MGL T Q+ L+ R G + G+ L R +G D Sbjct: 190 FLSRFKLADLPMVGPRFATKLERMGLETIAQAQQWTEDTLVHRLGDRAGQWLSRRIRGQD 249 Query: 231 ERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKL 290 E V +K V E T ++H E + RL + L + L VKL Sbjct: 250 ESIVRPRDRQKQVSRETTFGRNLHEDDVVERELLRLAVRVSADLR--RQALRARTITVKL 307 Query: 291 KFDDFQQTTQEHVWP--RLNKADLIATARKTWDERRGGR--GVRLVGLHVTLLDPQME-- 344 + DF+ + + ++ ++ A+ + R R VRL+G+ ++ + E Sbjct: 308 RDGDFRTRSAQRTLSGFIESEHSVVRAAKPLLRQMRKTRRAPVRLLGIALSHFEDDEEPR 367 Query: 345 --RQLVL 349 QL L Sbjct: 368 PAVQLGL 374 >UniRef50_B5Y6A2 DNA-directed DNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6A2_COPPD Length = 390 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 160/347 (46%), Gaps = 15/347 (4%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRG----VISTANYPARKFGVRSA 56 MR I+HVDMD FFA+ E NP L+ PI + RG VI+ A+Y A++ GV++ Sbjct: 1 MRWIMHVDMDAFFASCEQAINPKLKGKPIGVMADPYGRGKKRSVIAAASYEAKRKGVKAG 60 Query: 57 MPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCH 116 MP A LCP L L+ Y N + + +S +E S+DE ++ + Sbjct: 61 MPPKEAFNLCPDLILVQAHPSFYGYVHNQMLKYARSISSEVENYSIDEFFM-----TYYG 115 Query: 117 GSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTL 176 + +EIR+ + + +T S G+AP K LAK+A++ KP+G P +P+ + L Sbjct: 116 KDPDKVGEEIRRYVKKQFGITCSVGIAPGKILAKMATEEGKPDGLTWWKPQAIPSVYKYL 175 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P++ IPG+G A L G+ T D+ ++ G G + +QGIDE + + Sbjct: 176 PVSAIPGIGSRREALLNKNGIYTLEDLALTPKPIIKNLMGILGEYYQKIAQGIDETPLIT 235 Query: 237 ERLR-KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 + KS+ T+ EA+ L L + L ++ + + L++DD Sbjct: 236 QESPLKSITRSVTLDASTLSPLVVEAVGRLLCDSLGKGLEEI--NSRAKELFIFLRYDDM 293 Query: 296 QQTTQEHVWP--RLNKADLIATARKTWDERRG-GRGVRLVGLHVTLL 339 + + + + E R +GVRLVG+ +T + Sbjct: 294 SAESTGMKLEFYTNDPDVIFHNFKMLNKELRPYKQGVRLVGVGMTDI 340 >UniRef50_C7N9E0 DNA-directed DNA polymerase n=5 Tax=Fusobacteriaceae RepID=C7N9E0_LEPBD Length = 363 Score = 326 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 108/363 (29%), Positives = 178/363 (49%), Gaps = 21/363 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R +H DMD FFAA+E RDN LR PIAIG GV++TA+Y ARKFG++SAMPT Sbjct: 5 RIYLHYDMDAFFAAIEQRDNKELRGKPIAIGH-----GVVTTASYEARKFGIKSAMPTVQ 59 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG---- 117 A +LCP L ++ R D Y E I+ + + E S+DE Y+D+T+ + Sbjct: 60 AKRLCPSLIVVSLRKDIYFEEGRRIQGLIKNILKKCEFTSVDEGYIDITEFIQNKNIKLD 119 Query: 118 ------SATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI-TPAEVP 170 ++ +Q I++ +LT S G+ K AKIASD+NKPNG F+ Sbjct: 120 KRDEILKIERFIKKFKQYIYDNSKLTCSVGIGFSKISAKIASDINKPNGYFIFKNREHFL 179 Query: 171 AFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGI 229 ++ LA IPG+GK + L+ T + + + L++RFG G L+ +G+ Sbjct: 180 EYIYDKNLAIIPGIGKKTREVLKLFNTTTVFQLYEIEKNELIRRFGMSKGEYLYNTVRGL 239 Query: 230 DERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVK 289 ++N++R R+S G E T + + S +++ +L R+L ++ + VK Sbjct: 240 HFTEINTDRKRQSYGHEITFNREENDISIIYDELKKQSNKLSRKL--IEKNEFAKTVTVK 297 Query: 290 LKFDDFQQTTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQL 347 +++ +F T+ N+ + + + +RL+G+ ++ + QL Sbjct: 298 IRYSNFVTHTRSRTLENATNNENKIYEATLENLNFFEKKDEIRLIGVQLSSILKSNVVQL 357 Query: 348 VLG 350 Sbjct: 358 SFN 360 >UniRef50_C7MBE5 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBE5_BRAFD Length = 422 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 172/344 (50%), Gaps = 6/344 (1%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+H+DMD FFA++E+RD+P L +P+ +GG+ R V + A+YPAR G+RSAMP A Sbjct: 16 ILHLDMDAFFASIEVRDDPGLEGLPVVVGGAGARGVV-AAASYPARTRGIRSAMPMASAR 74 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIA 123 +L P L ++P R D Y++ S + ++ + E +S+DEA+LDV + G IA Sbjct: 75 RLAPDLVIVPPRIDHYRQVSAQVMQLLGDVVAETEQISVDEAFLDVRGARRLFGPPEQIA 134 Query: 124 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183 Q +R+ I EL L +S G + + +AKIAS KP+G ++ FL L +A I G Sbjct: 135 QLLRRRIREELGLPSSVGGSVSRAVAKIASAQAKPDGMLIVPAERTAEFLAPLSVAVISG 194 Query: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243 VG + L +G+RT G +++ L + G + + G D + +S+ Sbjct: 195 VGPKAQEALARIGVRTIGQLREIPRSTLARALGPRAPEIAALADGSDRTGLGHRARDRSL 254 Query: 244 GVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHV 303 G ERT ED+ E I + ++ R+L + + +KL+ D T+ Sbjct: 255 GTERTWDEDLTDPDEVRRRITTMADDVARQLR--RSGFVARTVVLKLRAPDGTTLTRSST 312 Query: 304 W--PRLNKADLIATARKTWDERRGGRG-VRLVGLHVTLLDPQME 344 P + L + W+ R +RL G+ V+ L+P Sbjct: 313 MDQPTASGERLRSQVIPLWERERPAMPRLRLAGVRVSHLEPGEG 356 >UniRef50_Q4P422 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P422_USTMA Length = 682 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 116/351 (33%), Positives = 178/351 (50%), Gaps = 20/351 (5%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARK-FGVRSAMPTG 60 R I+H D+D F+AAVE+ +P+L+ +G GV+ TA+Y AR+ +GVRS M Sbjct: 146 RTILHTDIDMFYAAVELARDPSLKGKCFGVGS-----GVLVTASYEARRGYGVRSGMAVF 200 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SA 119 +A LCPHL ++ +Y +AS + IF +Y + SLDEAYLD+T+ V + S Sbjct: 201 VAKALCPHLIVVKNDMQSYVQASQKVMAIFEQYDENLAKASLDEAYLDITEYVEQNASSI 260 Query: 120 TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQTLP 177 + Q++R + + QLT S G+AP LAKI+SD NKP+GQF I P + F++ LP Sbjct: 261 DQVVQQLRNQVRSHTQLTVSVGIAPNTMLAKISSDRNKPDGQFRIQPDRKVIVDFMRNLP 320 Query: 178 LAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS- 236 KIPG+G+V+ LE++G+ TCG++ + + L GK L + GI V Sbjct: 321 CRKIPGIGRVNERILESLGVTTCGEIWDKRVELWLSFDGKI-EWLIKAHLGIGNTVVEPS 379 Query: 237 -ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 RKSVG E T + +++ +E+ L + D + K D+F Sbjct: 380 KREERKSVGREHTFS-PTSDTKALLDLLKESAQRVEQDL--ARLDFKAKTITLVAKRDNF 436 Query: 296 QQTTQEHVWPR--LNKADLIATARKTWDERRGGRG---VRLVGLHVTLLDP 341 Q+ ++ R +L + G +RL+G+ VT L Sbjct: 437 QRFSRARTSTRLVHRAEELYDITSSLLMQEIEREGAISLRLIGVRVTQLVD 487 >UniRef50_Q4KWZ7 REV1 protein n=9 Tax=Euteleostomi RepID=Q4KWZ7_CHICK Length = 1255 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 93/319 (29%), Positives = 154/319 (48%), Gaps = 18/319 (5%) Query: 41 ISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPL 100 I++ +Y AR+ G+++ M G A KLCP+L + F+AYKE + + EI + YT IE + Sbjct: 519 IASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQTVYEILASYTHNIEAV 578 Query: 101 SLDEAYLDVTDSV-HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPN 159 S DEA +D+T+ + + +A IR I + + TAS G+ LA++A+ KP+ Sbjct: 579 SCDEALVDITEILTETRLTPDELANAIRDEIKAQTKCTASVGMGSNILLARMATRKAKPD 638 Query: 160 GQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KF 218 GQ+ + P EV F++ + +PGVG+ +KL ++G+RTCGD+Q + L K FG K Sbjct: 639 GQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKLASLGIRTCGDLQCASMSKLQKEFGPKT 698 Query: 219 GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK 278 G++L+ +G+D+R V +E+ RKSV E E EA + L E++RRL Sbjct: 699 GQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEAAG 758 Query: 279 PDLLIARQGVKLKFDDF-------------QQTTQEHVWP--RLNKADLIATARKTWDER 323 + ++ + + + + Sbjct: 759 MKGKRLTLKIMVRKAGAPVEPAKYGGHGICDNIARTVTLDHATDSAKVIGKETLNMFHTM 818 Query: 324 RGG-RGVRLVGLHVTLLDP 341 + +R VG+ V L P Sbjct: 819 KLNISDMRGVGIQVQQLVP 837 Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 24/35 (68%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR 38 I+HVDMDCFF +V +R+ P L+ P+A+ +R Sbjct: 423 IMHVDMDCFFVSVAIRNRPDLKGKPVAVTSNRGAG 457 >UniRef50_B1AJ79 DNA polymerase IV n=15 Tax=Ureaplasma RepID=DPO4_UREP2 Length = 360 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 187/354 (52%), Gaps = 6/354 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 + I+H+D+D F+A V +P ++ PIA+G R G+IS+ NY AR +GV++AMP + Sbjct: 7 KIIMHLDIDAFYATVSELLHPEYKNFPIAVGSLNSRTGIISSPNYLARSYGVKAAMPIFL 66 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV-HCHGSAT 120 A +LCP+L +LP + Y+ S H +I ++YT++IE S+DE ++D TD V H + Sbjct: 67 AKELCPNLIILPSEHNIYQSYSKHFFQIINKYTNKIEITSIDECFIDATDLVKKYHNNIR 126 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 L+A +I++ I N+L L+ S G++ K +AK+A+++NKP+G +I ++ + L + K Sbjct: 127 LLATKIQKEIKNKLNLSISIGISYNKTIAKMATELNKPSGISIIDENKIINLIYELNINK 186 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKC-DLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 IP +G++ + +L A+ + ++ + + G + L +G+ + + E + Sbjct: 187 IPYIGEIKSQELYAINIFKIKELIATENKQKISLVLGSIYQNLVNDLKGLSKIKIIDEDI 246 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ-- 297 K++ +T ED++ + E + L + RL K +L+ + +K+ F+ Sbjct: 247 YKTISHSKTFNEDLNDFYEISNEMNDLILTVTNRLKKC--NLMTNNISIYIKYPSFKTKI 304 Query: 298 TTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 ++ + + + + + +RL+G+ + L + + L L Sbjct: 305 KQKQLTYYTDDYQTIFLAIKNLFKIMYKDETIRLIGISLNKLVKKENVKKQLFL 358 >UniRef50_C4G2M8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2M8_ABIDE Length = 414 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 174/371 (46%), Gaps = 29/371 (7%) Query: 2 RKIIHVDMDCFFAAVEMRDN----PA---LRDIPIAIGGSRERR-GVISTANYPARKFGV 53 + I HVD++ F + P LR IP AIGG +R GVI+ + PA+K GV Sbjct: 3 KLIFHVDVNSAFLSWTAVKKLKEEPESVDLRTIPSAIGGDVSKRHGVITACSIPAKKQGV 62 Query: 54 RSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113 R+ P AL+ CP L L P F Y+E S EI +Y +E +S+DEAYLD+T + Sbjct: 63 RTGEPVMRALEKCPELQLFPSDFKTYREYSAKFIEILKKYALVVEQVSIDEAYLDMTGTD 122 Query: 114 HCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173 +A++I+ I+ L T + G++ VK LAK+ASD KP + P E+ + Sbjct: 123 E----PVSMAEKIKAEIYESLGFTVNIGISTVKLLAKMASDFEKPYKVHTLFPKEIKEKM 178 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDER 232 LP+ K+ G G ++ KL +G++T GD D +L G K G + E S G Sbjct: 179 WKLPIEKLHGCGYRTSEKLRNIGVKTIGDAAALDKKLLCSLLGEKSGEYIHESSNGRGSD 238 Query: 233 DVNSERL-RKSVGVERTMAEDI---HHWSECEAIIERLYPELERRLAKVKPDLLIARQGV 288 V+ ER KS E T+ DI + E +I+ L + +RL K + V Sbjct: 239 IVSGEREAAKSYSNETTLPYDIRVSTYDKEMPEVIKWLSESVSKRLKKDGAEGY--TISV 296 Query: 289 KLKFDDFQQTTQEHVW--PRLNKADLIATARKTWDE--------RRGGRGVRLVGLHVTL 338 K F++ +++ N ++ + E G G+RLVG+ V+ Sbjct: 297 SAKTSSFKRRSKQTTLVESINNAKEIEKVSISLMKELCFGEKGLFEGDEGIRLVGVGVSH 356 Query: 339 LDPQMERQLVL 349 L +Q+ + Sbjct: 357 LAEHECKQMDI 367 >UniRef50_P63988 DNA polymerase IV 2 n=20 Tax=Corynebacterineae RepID=DPO42_MYCBO Length = 346 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 160/341 (46%), Gaps = 10/341 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS---RERRGVISTANYPARKFGVRSAMP 58 R I+HVD+D F A+VE+ +P L +P+ +GG+ E R V++ A+Y AR +GVR+ MP Sbjct: 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 Query: 59 TGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 A + CP T LP AY AS + + +E DEAYL V + Sbjct: 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAV--APGTPDD 124 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPL 178 +A+EIR+ I ++ L+ S G++ K AKIA+ + KP G + +T A A + + Sbjct: 125 PIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTV 184 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238 + GVG + +L +G+ T + D +L+ FG + ++G + +V+++ Sbjct: 185 EALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQA 244 Query: 239 -LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 + +S T D+ SE E+ + L V + R V ++ F Sbjct: 245 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLN--EVVASSRTVTRVAVTVRTATFYT 302 Query: 298 TTQEHVW--PRLNKADLIATARKTWDERRGGRGVRLVGLHV 336 T+ P + + A AR D R VRL+G+ + Sbjct: 303 RTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRL 343 >UniRef50_Q5QZ82 DinP n=2 Tax=Idiomarina RepID=Q5QZ82_IDILO Length = 356 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 210/353 (59%), Gaps = 6/353 (1%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 RKI +D+D FFA+ E +P+L+ P A+GG ER V +TANY AR+FGV+SAMP Sbjct: 6 RKIALLDLDAFFASAEELRDPSLKTRPFAVGGGGERGVV-ATANYLARQFGVKSAMPGSH 64 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 A +LCP LT + + Y+E S+ + +I T RIEP S+DE YLD+T GSATL Sbjct: 65 ARRLCPQLTFIRPDGNYYRELSDKVLDILRELTPRIEPASIDEFYLDLTHLEGFKGSATL 124 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181 +R+ I L +T SAG++ K +AKIAS+ KP+GQFV+ PAEV ++ L L +I Sbjct: 125 AMDFVREQI-KTLGITGSAGISNQKMVAKIASEERKPDGQFVVRPAEVMDYIAALNLKQI 183 Query: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240 PGVG S L GL T D+Q +L L G K G +L+ER G D R+V +ER+R Sbjct: 184 PGVGPKSQQVLTNYGLTTGKDIQNIELQQLQAILGDKAGYVLFERCHGRDRREVVTERIR 243 Query: 241 KSVGVERTMAEDIHHWSECEAIIE-RLYPELERRLAKVK-PDLLIARQGVKLKFDDFQQT 298 KSVGVE+T+A D+ S +A ++ L P+L +R+ + I Q +KLKF DF QT Sbjct: 244 KSVGVEQTLATDMRLESTAQAYVQDNLLPKLRQRMKITHWREQPIRSQTLKLKFSDFTQT 303 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T ++ + + W +R G+GVRL+G+ TL DP + QL L L Sbjct: 304 TVSRSAQFISPSLFYQLLDEAW-QRGKGKGVRLLGISATLPDPNEQLQLELEL 355 >UniRef50_A9NFG9 DNA polymerase IV n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFG9_ACHLI Length = 383 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 106/357 (29%), Positives = 167/357 (46%), Gaps = 10/357 (2%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGG-SRERRGVISTANYPARKFGVRSAMPTG 60 + I H+D++ F+A M P L+ +GG S + RGV+STA+Y ARK+G+ + M Sbjct: 20 KVIFHIDLNAFYATCAMIKEPHLKHRVFVVGGQSSQPRGVVSTASYKARKYGIHAGMSML 79 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120 AL P L ++P F Y+E SN E+ Y+ + S+DEA+LD+T + Sbjct: 80 DALNKFPRLLIVPVDFKFYREMSNKFMEVLDAYSDLVLQASIDEAFLDMTKASEEIH-PI 138 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180 +A++I++ + ++ QL S G+AP FLAK+ASDM KP G V+ +V L L + Sbjct: 139 KLAKKIQKELVDKYQLPTSIGIAPTLFLAKMASDMKKPLGITVLRKRDVEKLLYPLSVTD 198 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCD-LVMLLKRFG-KFGRILWERSQGIDERDVNSE- 237 I G+GK + KL A+G+ T D L + + + E G V+ + Sbjct: 199 IYGIGKQTYPKLMALGINTIKDFMDLSNLPKITRVMKEETYYSFREYILGNSSNVVDPDK 258 Query: 238 -RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296 RL KS+ E T ++ S II E RL K ++L G KLK DF+ Sbjct: 259 YRLPKSISAETTFNTNMDEPSVILDIIMSQLDESLVRLK--KYNMLTKTVGFKLKSSDFK 316 Query: 297 QTTQEHVWP--RLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL 351 T+ + + ++ G RL G ++ L + ++ L Sbjct: 317 SITRSKTLEDYTNDPEIIKYELTSLFENEFEGGIYRLAGASLSNLILHSDNEIPFNL 373 >UniRef50_O74944 DNA polymerase kappa n=1 Tax=Schizosaccharomyces pombe RepID=POLK_SCHPO Length = 547 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 189/354 (53%), Gaps = 22/354 (6%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I+HVD D F+A++E NP L+ +P+A+G + V+ TANY ARKFGVRSAMP +A Sbjct: 131 IIVHVDCDAFYASIEELKNPKLKSLPMAVG-----KSVLCTANYVARKFGVRSAMPEFIA 185 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA--- 119 K+CP L ++P Y S I+ + ++Y S + P S+DE Y+++T + A Sbjct: 186 RKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQELAFTV 245 Query: 120 ---TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE--VPAFLQ 174 T++ ++IR+ + E +T S G+A K LAKIAS+ KPN QF I E + F+ Sbjct: 246 ENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMN 305 Query: 175 TLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF-GKFGRILWERSQGIDERD 233 LP+ ++ G+G+V +L + ++TCGD+Q+ +LV+L F K + L S G Sbjct: 306 DLPVREVSGIGRVLEQQLLGLEIKTCGDIQR-NLVILSYIFLPKSFQNLLRCSYGFGTTI 364 Query: 234 VNS--ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 ++ E RK++G E T + ++ S E + L + L K L+ +K K Sbjct: 365 LDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQ--KRGLVTNSIAIKYK 422 Query: 292 FDDFQQTTQEHVWPR--LNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQM 343 +FQ T++ + +++DL+ A + + +RL+G+ T L + Sbjct: 423 TSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYP-MTIRLLGVRATKLVSKS 475 >UniRef50_C5CJ42 DNA-directed DNA polymerase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CJ42_KOSOT Length = 424 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 154/343 (44%), Gaps = 7/343 (2%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 I HVDMD FFA+VE NP L+ PI + G R V+ +A+Y A+K+GV++ MP A Sbjct: 41 YIAHVDMDAFFASVEQASNPYLKGKPIIVTGKDTRHSVVVSASYEAKKYGVKAGMPAFKA 100 Query: 63 LKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLI 122 L++CP +P Y S I + + R S+DEA++D++ S + Sbjct: 101 LEICPKALFVPVDSGKYTYVSEEIMKRLEFISPRYSVASIDEAFIDLSVYHSLSDSINAL 160 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182 + R +I ++ S GVA +AKIASD NKP G V+ AFLQ + ++++P Sbjct: 161 -KLFRTSIEKTFGISFSIGVAVNPLIAKIASDFNKPRGFVVVKEGSEKAFLQNVDISQVP 219 Query: 183 GVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERS--QGIDERDVNSERLR 240 G+G + KLE G + ++ + D L FG L + + + + Sbjct: 220 GIGPHTLMKLENFGFKKASELLEADEFFLYHNFGNSFLGLVKSLTVKNYPKELFFKKEPP 279 Query: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ--QT 298 KSVG T+ D++ E + L + R+ K + LK+ DF + Sbjct: 280 KSVGHSMTLNHDVNSIELIERVASFLGAKAVYRMRKYGYQARGT--SLFLKYSDFSVARI 337 Query: 299 TQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDP 341 T+ + L E G VR VG+ + L P Sbjct: 338 TRSLSFYISRPEHLNNVLYWLIREIWNGEAVRAVGVSLYKLKP 380 >UniRef50_C1E418 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E418_9CHLO Length = 410 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 125/338 (36%), Positives = 179/338 (52%), Gaps = 13/338 (3%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61 R IHVDMD FFAA + P L +P+A+GG +ISTANY ARK GVRSAMP + Sbjct: 81 RTWIHVDMDAFFAACHTLERPELASVPMAVGGM----SMISTANYVARKAGVRSAMPGFV 136 Query: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTD-SVHCHGSAT 120 A+KLCP L + F+ Y++ + +RE++ Y + SLDEAYLDVT+ Sbjct: 137 AVKLCPALVFVRQDFELYQKYAAMLREVWRVYDKEFDCGSLDEAYLDVTEFMSRTGMDGG 196 Query: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPL 178 +A ++R + + +LT SAGVAP + LAKI SD NKPNGQFV+ + V +FL LP+ Sbjct: 197 EVAAKLRSDVETKTRLTCSAGVAPTRRLAKICSDWNKPNGQFVLERSREAVISFLSDLPV 256 Query: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGK-FGRILWERSQGIDERDVNSE 237 K+ GVGKV KL A +RTCG +++ L ++ F L+ + G + Sbjct: 257 RKVGGVGKVLEGKLSAFQIRTCGQLRQ-SLNVIAAVFTPATIDFLFSVALGTGTEQRPPD 315 Query: 238 RLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQ 297 RK +G ERT A EA + L ++ + L K +L +K+K +F+ Sbjct: 316 AQRKGLGHERTFA-PTSDPRFIEAKLHGLAEDVAKELQ--KENLKAQTVTLKIKKSNFEV 372 Query: 298 TTQEHVWPRLNKA-DLIATARKTWDERRGGRGVRLVGL 334 ++ P N A + A + R +RLVG+ Sbjct: 373 MQRQLTVPSSNAAKVIAEAAILLLRKERPYGALRLVGV 410 >UniRef50_A2FMN4 ImpB/MucB/SamB family protein n=1 Tax=Trichomonas vaginalis RepID=A2FMN4_TRIVA Length = 519 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 201/355 (56%), Gaps = 13/355 (3%) Query: 3 KIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMA 62 +H D+D FFA+VE +P+L+ A+GGS +RG+IST++Y ARK+GVRS M +A Sbjct: 90 TYMHCDLDSFFASVEALLDPSLKGTAFAVGGSV-KRGIISTSSYEARKYGVRSGMAVFVA 148 Query: 63 LKLCPHLTLLPGRF-DAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 +KLCPHL ++ D Y S ++E+F +Y DEA LD+T ++ + + Sbjct: 149 MKLCPHLNVVHYNHGDKYMNFSKQVQEVFKKYDPEFVSFGCDEATLDITPLLNDNLHSDQ 208 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVIT--PAEVPAFLQTLPLA 179 +A++I+Q +F++ +LT S GVA L+KIASD+NKPNG F++ ++ +FL TLP+ Sbjct: 209 LAKQIQQEVFDKTKLTVSIGVAHTPQLSKIASDINKPNGIFIVPKNDDDLKSFLHTLPVR 268 Query: 180 KIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERL 239 KIPG+G V+ L+ +G+ TCGD+ + L KF R ++ + G+ R+ S Sbjct: 269 KIPGIGGVNEQILKGIGIETCGDILLKKAEIWLTMSHKFCRFVFSAAVGVQPREYES-GP 327 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299 ++S+ +RT+ ++E L ++ +++ K++ + VK K +F+ + Sbjct: 328 QQSISKDRTIDA-TDDKCTLIDLVESLARKISKKMKKMR--IACRNVAVKFKDINFKVIS 384 Query: 300 QEHVW--PRLNKADLIATARKTWDERRGGRGV--RLVGLHVTLLD-PQMERQLVL 349 + + + +++DL+ + K E R R + RLVG+ T L P ++Q + Sbjct: 385 KSYTFDYDTSDESDLVNASLKLLLEERQERSIKLRLVGVKATNLTSPGDKKQSSI 439 >UniRef50_A9V4K7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V4K7_MONBE Length = 1412 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 115/370 (31%), Positives = 166/370 (44%), Gaps = 54/370 (14%) Query: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGS-RERRGVISTANYPARKFGVRSAMPTG 60 R I+H+D+D FF ++ +R+ L+D P+AI S RE IS+ NYPAR+FG+R+ M Sbjct: 321 RVIVHIDLDAFFVSIALRERQELQDQPVAIAHSGREGSSEISSCNYPARQFGIRNGMSMR 380 Query: 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSA- 119 AL CPHL LP FD YK AS + + T RI+ +S+DEAYLD+T V S Sbjct: 381 RALAACPHLQTLPYEFDKYKLASQAFYRLLTARTLRIQAVSMDEAYLDLTGLVRPDYSPH 440 Query: 120 ---------------------------------TLIAQEIRQTIFNELQLTASAGVAPVK 146 T E+R I EL + ASAG+ P Sbjct: 441 LWQAVQQRQHEGHPPLSPAPLQEASLPVPTQSATEFVAELRTAIAEELGIAASAGIGPNV 500 Query: 147 FLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKC 206 LA++ + + KPNG + A V F+ L +PGVG +A +L MG+ +C D++ Sbjct: 501 LLARLCTRLAKPNGLYSYAEANVERFIDQTALKDLPGVGWCTAGRLTTMGIASCADLRAL 560 Query: 207 DLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIER 265 L L FG K G+ L+ +GID + KSV VE T ++ + + Sbjct: 561 PLDRLQADFGHKNGQALYNACRGIDPSPLKDNAPPKSVSVEITWGVRFDKDAQVDTFVSN 620 Query: 266 LYPELERRLAKVKPDLLIARQGVKLK----------------FDDFQQTTQEHVWPRLNK 309 L E+ RL V L R +K+K D + + P + Sbjct: 621 LCREVCSRLEAVGQ--LATRVTLKIKQRKPDAGDPHKRLGHGPCDDRNRSTALPSPTDDL 678 Query: 310 ADLIATARKT 319 A + AT + Sbjct: 679 ATITATCLEL 688 >UniRef50_B5BUV5 DNA polymerase kappa n=2 Tax=Agaricales RepID=B5BUV5_COPCI Length = 707 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 123/336 (36%), Positives = 179/336 (53%), Gaps = 21/336 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 I+HVDMD F+A VE+ +P+L+ P A+G RGV+STA+Y ARK+GVRS M + Sbjct: 106 IVHVDMDAFYANVEILRDPSLKGKPFAVG-----RGVMSTASYEARKYGVRSGMAGFIGK 160 Query: 64 KLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SATLI 122 KLCP L +P FD Y + S I IF RY + P +DEAYL+VT HG + + Sbjct: 161 KLCPQLIFVPAHFDLYSKTSAQIMSIFRRYDPTMCPAGVDEAYLNVTAYCKQHGKTVDEV 220 Query: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVI--TPAEVPAFLQTLPLAK 180 E+R+ +F+E QLT SAG+AP K LAKI SD NKPNGQF + P + AF+ +L + K Sbjct: 221 VSEMRKAVFDETQLTVSAGIAPNKMLAKICSDKNKPNGQFKLEFEPDSIKAFMHSLSIRK 280 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCD--LVMLLKRFGKFGRILWERSQGIDERDVNS-- 236 +PGVG+V+ L+++G+RTCGD+ + + ++ KRFG L GI V Sbjct: 281 VPGVGRVNERLLDSIGIRTCGDIYQQRGVIALMDKRFG--LDFLLRVYLGIASNHVAPHA 338 Query: 237 ERLRKSVGVERTMAEDIHHWSE-----CEAIIERLYPELERRLAKVKPDLLIARQGVKLK 291 RKS+G ERT + + ++ + + E + + +K K Sbjct: 339 REERKSIGAERTFSTLDSNHADPKKGSVAIVAKLEEVAEELVEDMKREGWVGKTVTLKYK 398 Query: 292 FDDFQQTTQEHVWP--RLNKADLIATARKTWDERRG 325 D +Q T+ + K +L T ++ R Sbjct: 399 LDTYQTFTRAKQFSKWITTKEELFNTGKELLLSRFP 434 >UniRef50_Q11QJ9 Nucleotidyltransferase/DNA polymerase involved in DNA repair/SOS mutagenesis and repair n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11QJ9_CYTH3 Length = 419 Score = 320 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 78/358 (21%), Positives = 145/358 (40%), Gaps = 18/358 (5%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 +D +CF+ + E P LR P+ + + + G + + + A+ GV+ P Sbjct: 2 YALIDCNCFYVSCERVFRPDLRQQPVVVLSNND--GCVISRSDEAKAIGVKMGEPFFKMK 59 Query: 64 KLCPHLTL--LPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 +L + + + Y + S+ + + + IE S+DEA+L + +S H Sbjct: 60 ELVRNGKVTAFSSNYTLYGDLSDRVMKTLASIVPDIEVYSIDEAFLHLNES---HTDLET 116 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKP-NGQFVITPAEVPAFLQTLPLAK 180 + IR T+ + G+AP K LAK+A+ ++K G +I P + L L Sbjct: 117 LGHTIRNTVKQHTGIPVGVGIAPTKTLAKLANRLSKKTGGVHIIYPDNIQEKLNACALQD 176 Query: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSE-RL 239 + G+G+ +A +L+A + T + + F G ++ +GI D+ E Sbjct: 177 VWGIGRRNAKRLQANYVDTIEQFVNQREEWVRQHFSVIGLRTYKELKGIPCIDMEDELTE 236 Query: 240 RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGV-KLKFDD---- 294 +KS+ R+ E + ++ + I +L K K + K +F D Sbjct: 237 KKSICTSRSFGELQNTFASIQEAIATHAASCAEKLRKQKCAAAGMYVSLSKSRFTDQEGD 296 Query: 295 --FQQTTQEHVWPRLNKADLIATARKTWD-ERRGGRGVRLVGLHVTLLDPQMERQLVL 349 F + N A LI A K + + + G+ V + P+ + QL L Sbjct: 297 KYFGTYIK-LPQATNNTATLIQYASKGLELLFKKDVYYKKCGVTVIDIVPEEKIQLNL 353 >UniRef50_C0QCD0 UmuC1 n=3 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QCD0_DESAH Length = 422 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 73/365 (20%), Positives = 137/365 (37%), Gaps = 22/365 (6%) Query: 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60 M VD + F+ + E NP L P+ + + + G + A+ G+ P Sbjct: 1 MPVFALVDCNNFYVSCERVFNPQLVGKPVIVLSNND--GCAVARSNEAKALGIAMGAPFF 58 Query: 61 MALKLCPH--LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGS 118 + + + + Y + SN + + + +T +E S+DEA+LD+T+ Sbjct: 59 QIKAIVEGNGVRVFSSNYPLYGDMSNRVMQTLAPFTPAMEIYSIDEAFLDLTNF--AFTD 116 Query: 119 ATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKP----NGQFVITPAEVPAF-L 173 A+++R T+ + S G+AP K LAKIA+ + K +G +TP L Sbjct: 117 LVNYARKMRNTVQRNTGIPVSIGIAPTKTLAKIANRIAKKSSKADGVLDLTPTSYRDLAL 176 Query: 174 QTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERD 233 + P+ + G+G+ + G+RT D + ++ + G G + G Sbjct: 177 EMTPIGDVWGIGRRLTPFFKYRGIRTALDFKSAAPSLIRGKMGINGIRMQRELAGESCYP 236 Query: 234 VNS-ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKF 292 + RKSV V R+ + E + +L V + Sbjct: 237 LEDCPARRKSVAVSRSFKTPATTFDELSQAVSLYISRGAEKLRHQGS--FTETLTVYVMT 294 Query: 293 DDFQ-----QTTQEHVWPR--LNKADLIATARKTWDE-RRGGRGVRLVGLHVTLLDPQME 344 + F ++ V P + +LI + + + G+ G+ + L + Sbjct: 295 NRFSPQSYYYNSKTAVLPTASNSTPELIKQGKGLLKQIFQSGKYYTKAGIVFSSLTRDGQ 354 Query: 345 RQLVL 349 QL L Sbjct: 355 VQLDL 359 >UniRef50_A0L9G4 DNA-directed DNA polymerase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9G4_MAGSM Length = 421 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 73/363 (20%), Positives = 128/363 (35%), Gaps = 23/363 (6%) Query: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMAL 63 VD + F+A+ E P L P+ + + + G + A++ G+ P Sbjct: 3 YALVDCNNFYASCERLFQPHLEGKPVVVLSNND--GCAIARSNEAKQLGIAMGAPLHQIQ 60 Query: 64 KLC--PHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121 L + L + Y + S + + R+E S+DEA+LD+ Sbjct: 61 ALIKQHQVALFSSNYPLYGDLSARVMRTLEQLAPRVEIYSIDEAFLDLQGMPAPQRQI-- 118 Query: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPN----GQFVI-TPAEVPAFLQTL 176 + + I Q + + S G+ P K LAK+A+ K + G + P L L Sbjct: 119 LGRTIHQQVKRWTGIPVSVGIGPTKTLAKVANRFAKKSPKTEGVLDLSDPQWCRKALHQL 178 Query: 177 PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNS 236 P+ ++ GVG A +L G+ T + + + ++F +G + Sbjct: 179 PVGEVWGVGPRWAKRLNQAGIDTALQLSRMPPPLARQQFNVVLERTVRELRGESVIPFAA 238 Query: 237 -ERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDF 295 R+S+ RT + IH E + I +L K LL A + + + F Sbjct: 239 LPAARQSIATTRTFGQKIHTHDEIKEAISSFTVRAAEKLR--KQGLLAAALHLFITTNRF 296 Query: 296 Q--------QTTQEHVWPRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQMERQ 346 T P+ + L+ A D G + G+ + L Q Sbjct: 297 SEQDLQYKNSLTWSFQQPQDDTLTLLTGAHAALDAIYRPGYRYQKAGVILLGLVSAQHFQ 356 Query: 347 LVL 349 L Sbjct: 357 PSL 359 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.180 0.541 Lambda K H 0.267 0.0552 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,517,594,726 Number of Sequences: 3077464 Number of extensions: 121682254 Number of successful extensions: 333919 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2018 Number of HSP's successfully gapped in prelim test: 406 Number of HSP's that attempted gapping in prelim test: 324158 Number of HSP's gapped (non-prelim): 3106 length of query: 351 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 222 effective length of database: 643,403,500 effective search space: 142835577000 effective search space used: 142835577000 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 94 (40.4 bits)