46 d1ksha_ Probab=99.81   E-value=2.7e-19  Score=118.53  Aligned_columns=146  Identities=14%

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC----CCCCCEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
Q ss_conf             899985988999899999847963----2122222100002321011010117999999998870128789981488846
Q batch____         3 RIAFVGSVGAGKTTLFNALQGNYT----LARKTQAVEFNDKGDIDTPGEYFNHPRWYHALITTLQDVDMLIYVHGANDPE   78 (159)
Q Consensus         3 KV~iiG~~~~GKStLin~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~   78 (159)
                      ||+++|.+|||||||+|+|++..+    ...................++..........+...+..++.+++++|..+..
T Consensus         4 kI~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (164)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ   83 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCC
T ss_conf             99998598999999999997594522211124566554115537878640233322102333432025552145522200


Q ss_pred             CCCHHHHHHHH-------CCCCEEEEEECCCC---CHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             52115778751-------58965887620453---011124788999971699759998479999989999999999799
Q batch____        79 SRLPAGLLDIG-------VSKRQIAVISKTDM---PDADVAATRKLLLETGFEEPMFELNSHDPQSVQQLVDYLASLTKQ  148 (159)
Q Consensus        79 ~~~~~~~~~~~-------~~~~~~~~~nk~D~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~gi~~l~~~l~~~~~~  148 (159)
                      .......+...       ...+..+++++.|.   ...................++|+|||++|+||++++++|++.+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAktg~gi~e~~~~i~~~i~~  163 (164)
T d1ksha_          84 RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  163 (164)
T ss_dssp             GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCCHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             00002344333433112345421024310255100136599999986102179679997568998889999999999861