333 c1nijA_ Probab=97.15   E-value=0.0054  Score=34.25  Aligned_columns=125  Identities=18%

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEH-------------------------------
Q ss_conf             9089998598899989999984796321222221000023210110101-------------------------------
Q batch____         1 MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDTPGEYF-------------------------------   49 (159)
Q Consensus         1 m~KV~iiG~~~~GKStLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------   49 (159)
                      |+=.++.|.-|+|||||+|++...  ..+....+...........+...                               
T Consensus         3 ipv~iitGfLGaGKTTll~~ll~~--~~~~~~avi~Nefg~~~iD~~ll~~~~~~v~~l~~GCiCC~~~~~~~~~l~~l~   80 (317)
T c1nijA_           3 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL   80 (317)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCEECCCHHHHHHHHHHHH
T ss_conf             618998089888988999999842--699738999716644420588984079729997799542132477899999999


Q ss_pred             ---------------------HHHHHHHHHHH-----HHHHCCEEEEEECCCCCCCCCHH-HHHHHHCCCCEEEEEECCC
Q ss_conf             ---------------------17999999998-----87012878998148884652115-7787515896588762045
Q batch____        50 ---------------------NHPRWYHALIT-----TLQDVDMLIYVHGANDPESRLPA-GLLDIGVSKRQIAVISKTD  102 (159)
Q Consensus        50 ---------------------~~~~~~~~~~~-----~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~nk~D  102 (159)
                                           ...........     ..-..+.++.|+|+.+....... .....-...--.+++||+|
T Consensus        81 ~~~~~~~~~~d~i~IE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vi~vvD~~~~~~~~~~~~~~~~Qi~~Ad~ivlnk~D  160 (317)
T c1nijA_          81 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTD  160 (317)
T ss_dssp             HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTT
T ss_pred             HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf             84125546866899808875798999988630820113089801789974026777663225564453107789960556


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             30111247889999716997599984
Q batch____       103 MPDADVAATRKLLLETGFEEPMFELN  128 (159)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~S  128 (159)
                      .... ...............+++.++
T Consensus       161 ~~~~-~~~i~~~i~~lnP~a~i~~~~  185 (317)
T c1nijA_         161 VAGE-AEKLHERLARINARAPVYTVT  185 (317)
T ss_dssp             TCSC-THHHHHHHHHHCSSSCEEECC
T ss_pred             CCCH-HHHHHHHHHHHCCCCEEEEEE
T ss_conf             6898-999999997408997799963