128 d3prna_ Probab=20.36   E-value=28  Score=9.72  Aligned_columns=132  Identities=14%

Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEE-------CCCEEEEEE
Q ss_conf             5656621331001279988873025624478999865546760567644210135533354332-------586399888
Q batch____      1745 AELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYSQFFGLKHQMSF-------DNGMNWNNA 1817 (2003)
Q Consensus      1745 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-------~~~~~~~~~ 1817 (2003)
                      .+..+...-+...+++.+.....   .+.+++++.+.+......+...-...-.+.........       ...=.|.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~Y~~g---~~~~~~~y~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg  227 (289)
T d3prna_         151 PDQTVDSSLVTEEFGIAADWSND---MISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLY  227 (289)
T ss_dssp             TTTTSCGGGSCCEEEEEEEEECS---SEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEEEEEEEECTTSTTCSEEEEE
T ss_pred             CCCCCCCCCCCCEEEEEEEECCC---CEEEEEEEEECCCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEEE
T ss_conf             88775666665068999981356---549999985114677764136777678622227888852245677763069999


Q ss_pred             EEEEEEECEEEEEEEECCCEEEEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCEEEECCCCEEEEECC
Q ss_conf             99886502217899960724678864567799999456787963897499997766889865075665065412002136
Q batch____      1818 LRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFEPSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNS 1897 (2003)
Q Consensus      1818 ~~~~~~~~d~~R~~~~~~~~~~a~~~y~~~~~~~~~e~g~~~~~~~~~~i~Pyagl~~~~~~~~~~~E~ga~~~~L~v~s 1897 (2003)
                      +.|.++.....-.+...+    .+.+.+.|.      +++++.|+++++|.                        -.+..
T Consensus       228 ~~Y~~g~~t~~a~y~~~~----~d~~~~~~~------lg~~Y~l~~~~~l~------------------------~~~g~  273 (289)
T d3prna_         228 GNYAFGATTVRAYVSDID----RAGADTAYG------IGADYQFAEGVKVS------------------------GSVQS  273 (289)
T ss_dssp             EEEEETTEEEEEEEEEEC----STTCCCEEE------EEEEEEEETTEEEE------------------------EEEEE
T ss_pred             EEEEECCEEEEEEEEEEC----CCCCCEEEE------EEEEEECCCCEEEE------------------------EEEEE
T ss_conf             999916709999999612----466421699------99999568757999------------------------99874


Q ss_pred             CCCCEEEEEEEEEEEC
Q ss_conf             6540375057799960
Q batch____      1898 GSETAVDSIVGLKLDY 1913 (2003)
Q Consensus      1898 ~~~~~~~~~~G~~~~~ 1913 (2003)
                      ......+..||||.++
T Consensus       274 ~~~~~t~a~~Gv~~~F  289 (289)
T d3prna_         274 GFANETVADVGVRFDF  289 (289)
T ss_dssp             CTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEEEEEEEEC
T ss_conf             1577507898799879