Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46829
DateThu Jan 5 12:34:51 GMT 2012
Unique Job ID86127b9aedc38e4d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2xhyD_
Top template information
PDB header:hydrolase
Chain: D: PDB Molecule:6-phospho-beta-glucosidase bgla;
PDBTitle: crystal structure of e.coli bgla
Confidence and coverage
Confidence:100.0% Coverage: 97%
464 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIVKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVLPGKY
Secondary structure 
SS confidence 
Disorder  ????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  YPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDE
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  INNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGC
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  MLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGD
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRY
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  ALCELYERYQRPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLM
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........
Sequence  GYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGEKL
Secondary structure 
SS confidence 
Disorder 
?
?
???
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2xhy chain D

3D model

Region: 5 - 479
Aligned: 464
Modelled: 475
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: D: PDB Molecule:6-phospho-beta-glucosidase bgla;
PDBTitle: crystal structure of e.coli bgla

Phyre2

PDB 3pn8 chain A

3D model

Region: 5 - 479
Aligned: 474
Modelled: 473
Confidence: 100.0%
Identity: 62%
PDB header:hydrolase
Chain: A: PDB Molecule:putative phospho-beta-glucosidase;
PDBTitle: the crystal structure of 6-phospho-beta-glucosidase from streptococcus2 mutans ua159

Phyre2

PDB 3qom chain A

3D model

Region: 3 - 479
Aligned: 474
Modelled: 477
Confidence: 100.0%
Identity: 56%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phospho-beta-glucosidase;
PDBTitle: crystal structure of 6-phospho-beta-glucosidase from lactobacillus2 plantarum

Phyre2

PDB 1qox chain A

3D model

Region: 7 - 479
Aligned: 444
Modelled: 455
Confidence: 100.0%
Identity: 32%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 2j78 chain A domain 1

3D model

Region: 3 - 478
Aligned: 439
Modelled: 465
Confidence: 100.0%
Identity: 33%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 3gno chain A

3D model

Region: 3 - 474
Aligned: 453
Modelled: 461
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:os03g0212800 protein;
PDBTitle: crystal structure of a rice os3bglu6 beta-glucosidase

Phyre2

PDB 2dga chain A

3D model

Region: 2 - 474
Aligned: 453
Modelled: 473
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of hexameric beta-glucosidase in wheat

Phyre2

PDB 3ahx chain C

3D model

Region: 6 - 475
Aligned: 438
Modelled: 460
Confidence: 100.0%
Identity: 34%
PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucosidase a;
PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans

Phyre2

PDB 2rgm chain A

3D model

Region: 3 - 474
Aligned: 451
Modelled: 462
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: rice bglu1 beta-glucosidase, a plant exoglucanase/beta-glucosidase

Phyre2

PDB 3fiy chain A

3D model

Region: 7 - 478
Aligned: 437
Modelled: 462
Confidence: 100.0%
Identity: 32%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of bglb

Phyre2

PDB 1e4m chain M

3D model

Region: 2 - 473
Aligned: 453
Modelled: 472
Confidence: 100.0%
Identity: 25%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 1e4i chain A

3D model

Region: 6 - 478
Aligned: 441
Modelled: 456
Confidence: 100.0%
Identity: 31%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 2z1s chain A

3D model

Region: 4 - 477
Aligned: 442
Modelled: 456
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase b;
PDBTitle: beta-glucosidase b from paenibacillus polymyxa complexed2 with cellotetraose

Phyre2

PDB 1v08 chain A

3D model

Region: 2 - 474
Aligned: 454
Modelled: 459
Confidence: 100.0%
Identity: 28%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 1gnx chain A

3D model

Region: 5 - 476
Aligned: 442
Modelled: 460
Confidence: 100.0%
Identity: 33%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 2jf7 chain B

3D model

Region: 2 - 473
Aligned: 452
Modelled: 461
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: B: PDB Molecule:strictosidine-o-beta-d-glucosidase;
PDBTitle: structure of strictosidine glucosidase

Phyre2

PDB 1pbg chain A

3D model

Region: 3 - 478
Aligned: 444
Modelled: 462
Confidence: 100.0%
Identity: 35%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 2j75 chain A

3D model

Region: 3 - 478
Aligned: 437
Modelled: 458
Confidence: 100.0%
Identity: 33%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin

Phyre2

PDB 3ptk chain B

3D model

Region: 3 - 473
Aligned: 452
Modelled: 457
Confidence: 100.0%
Identity: 29%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase os4bglu12;
PDBTitle: the crystal structure of rice (oryza sativa l.) os4bglu12

Phyre2

PDB 3u57 chain A

3D model

Region: 3 - 473
Aligned: 450
Modelled: 461
Confidence: 100.0%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:raucaffricine-o-beta-d-glucosidase;
PDBTitle: structures of alkaloid biosynthetic glucosidases decode substrate2 specificity

Phyre2
1
c2xhyD_
2
c3pn8A_
3
c3qomA_
4
d1qoxa_
5
d2j78a1
6
c3gnoA_
7
c2dgaA_
8
c3ahxC_
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c2rgmA_
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c3fiyA_
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d1e4mm_
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d1e4ia_
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c2z1sA_
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d1v08a_
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d1gnxa_
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c2jf7B_
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d1pbga_
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c2j75A_
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c3ptkB_
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c3u57A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2xhyD_
100.0 100 PDB header:hydrolase
Chain: D: PDB Molecule:6-phospho-beta-glucosidase bgla;
PDBTitle: crystal structure of e.coli bgla
2c3pn8A_
100.0 62 PDB header:hydrolase
Chain: A: PDB Molecule:putative phospho-beta-glucosidase;
PDBTitle: the crystal structure of 6-phospho-beta-glucosidase from streptococcus2 mutans ua159
3c3qomA_
100.0 56 PDB header:hydrolase
Chain: A: PDB Molecule:6-phospho-beta-glucosidase;
PDBTitle: crystal structure of 6-phospho-beta-glucosidase from lactobacillus2 plantarum
4d1qoxa_
100.0 32 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
5d2j78a1
100.0 33 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
6c3gnoA_
100.0 28 PDB header:hydrolase
Chain: A: PDB Molecule:os03g0212800 protein;
PDBTitle: crystal structure of a rice os3bglu6 beta-glucosidase
7c2dgaA_
100.0 31 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of hexameric beta-glucosidase in wheat
8c3ahxC_
100.0 34 PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucosidase a;
PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans
9c2rgmA_
100.0 28 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: rice bglu1 beta-glucosidase, a plant exoglucanase/beta-glucosidase
10c3fiyA_
100.0 32 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of bglb
11d1e4mm_
100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
12d1e4ia_
100.0 31 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
13c2z1sA_
100.0 27 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase b;
PDBTitle: beta-glucosidase b from paenibacillus polymyxa complexed2 with cellotetraose
14d1v08a_
100.0 28 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
15d1gnxa_
100.0 33 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
16c2jf7B_
100.0 31 PDB header:hydrolase
Chain: B: PDB Molecule:strictosidine-o-beta-d-glucosidase;
PDBTitle: structure of strictosidine glucosidase
17d1pbga_
100.0 35 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
18c2j75A_
100.0 33 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin
19c3ptkB_
100.0 29 PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase os4bglu12;
PDBTitle: the crystal structure of rice (oryza sativa l.) os4bglu12
20c3u57A_
100.0 29 PDB header:hydrolase
Chain: A: PDB Molecule:raucaffricine-o-beta-d-glucosidase;
PDBTitle: structures of alkaloid biosynthetic glucosidases decode substrate2 specificity
21c3ai0A_
not modelled 100.0 29 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of beta-glucosidase from termite neotermes2 koshunensis in complex with para-nitrophenyl-beta-d-glucopyranoside
22c1v02F_
not modelled 100.0 29 PDB header:hydrolase
Chain: F: PDB Molecule:dhurrinase;
PDBTitle: crystal structure of the sorghum bicolor dhurrinase 1
23d1cbga_
not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
24d1v02a_
not modelled 100.0 29 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
25d1wcga1
not modelled 100.0 28 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
26c2e3zB_
not modelled 100.0 30 PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of intracellular family 1 beta-2 glucosidase bgl1a from the basidiomycete phanerochaete3 chrysosporium in substrate-free form
27c2zoxA_
not modelled 100.0 29 PDB header:hydrolase
Chain: A: PDB Molecule:cytosolic beta-glucosidase;
PDBTitle: crystal structure of the covalent intermediate of human cytosolic2 beta-glucosidase
28c3ahyD_
not modelled 100.0 30 PDB header:hydrolase
Chain: D: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of beta-glucosidase 2 from fungus trichoderma reesei2 in complex with tris
29d1qvba_
not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
30d1uwsa_
not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
31d1ug6a_
not modelled 100.0 34 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
32d1vffa1
not modelled 100.0 28 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
33c2cncA_
not modelled 100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:endoxylanase;
PDBTitle: family 10 xylanase
34d1xyza_
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
35c1xyzA_
not modelled 100.0 18 PDB header:glycosyltransferase
Chain: A: PDB Molecule:1,4-beta-d-xylan-xylanohydrolase;
PDBTitle: a common protein fold and similar active site in two2 distinct families of beta-glycanases
36d1ur1a_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
37d1v6ya_
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
38d1nq6a_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
39d1fh9a_
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
40c3emzA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-xylanase;
PDBTitle: crystal structure of xylanase xynb from paenibacillus2 barcinonensis complexed with a conduramine derivative
41d1vbua1
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
42d1kwga2
not modelled 100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
43d1v6wa2
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
44d1v0la_
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
45c2jepB_
not modelled 100.0 15 PDB header:hydrolase
Chain: B: PDB Molecule:xyloglucanase;
PDBTitle: native family 5 xyloglucanase from paenibacillus pabuli
46d1n82a_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
47d1w32a_
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
48c2depA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:thermostable celloxylanase;
PDBTitle: crystal structure of xylanase b from clostridium2 stercorarium f9
49c3ndyA_
not modelled 100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase d;
PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
50d1i1wa_
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
51d1edga_
not modelled 100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
52d1bg4a_
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
53d1rh9a1
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
54d1w91a2
not modelled 99.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
55c3aysA_
not modelled 99.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose
56d1hjsa_
not modelled 99.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
57d1hjqa_
not modelled 99.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
58d1vjza_
not modelled 99.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
59d1ta3b_
not modelled 99.9 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
60d1tuxa_
not modelled 99.9 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
61d1ceoa_
not modelled 99.9 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
62c3mmwB_
not modelled 99.9 19 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: crystal structure of endoglucanase cel5a from the hyperthermophilic2 thermotoga maritima
63c3ncoA_
not modelled 99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase fncel5a;
PDBTitle: crystal structure of fncel5a from f. nodosum rt17-b1
64d1us3a2
not modelled 99.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
65c2fglA_
not modelled 99.9 22 PDB header:hydrolase
Chain: A: PDB Molecule:alkaline thermostable endoxylanase;
PDBTitle: an alkali thermostable f/10 xylanase from alkalophilic2 bacillus sp. ng-27
66d1r85a_
not modelled 99.9 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
67c3pzqA_
not modelled 99.9 15 PDB header:hydrolase
Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family
PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol
68c1uz4A_
not modelled 99.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:man5a;
PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis
69d1uuqa_
not modelled 99.8 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
70d1ur4a_
not modelled 99.8 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
71c2bs9B_
not modelled 99.8 22 PDB header:hydrolase
Chain: B: PDB Molecule:beta-xylosidase;
PDBTitle: native crystal structure of a gh39 beta-xylosidase xynb12 from geobacillus stearothermophilus
72d1uhva2
not modelled 99.8 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
73d1foba_
not modelled 99.8 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
74c3qr3B_
not modelled 99.8 15 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase eg-ii;
PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei)
75c3icgD_
not modelled 99.8 17 PDB header:hydrolase
Chain: D: PDB Molecule:endoglucanase d;
PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
76c2oylB_
not modelled 99.8 13 PDB header:hydrolase
Chain: B: PDB Molecule:endoglycoceramidase ii;
PDBTitle: endo-glycoceramidase ii from rhodococcus sp.: cellobiose-like2 imidazole complex
77d1h1na_
not modelled 99.8 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
78c3l55B_
not modelled 99.8 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:b-1,4-endoglucanase/cellulase;
PDBTitle: crystal structure of a putative beta-1,4-endoglucanase /2 cellulase from prevotella bryantii
79c1uhvD_
not modelled 99.8 22 PDB header:hydrolase
Chain: D: PDB Molecule:beta-xylosidase;
PDBTitle: crystal structure of beta-d-xylosidase from2 thermoanaerobacterium saccharolyticum, a family 393 glycoside hydrolase
80c1kwgA_
not modelled 99.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase
81d2c0ha1
not modelled 99.7 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
82d1bhga3
not modelled 99.7 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
83d1ecea_
not modelled 99.7 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
84c1iszA_
not modelled 99.7 20 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-d-xylanase;
PDBTitle: crystal structure of xylanase from streptomyces2 olivaceoviridis e-86 complexed with galactose
85c1bhgB_
not modelled 99.6 18 PDB header:glycosidase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: human beta-glucuronidase at 2.6 a resolution
86c2w5fB_
not modelled 99.6 16 PDB header:hydrolase
Chain: B: PDB Molecule:endo-1,4-beta-xylanase y;
PDBTitle: high resolution crystallographic structure of the2 clostridium thermocellum n-terminal endo-1,4-beta-d-3 xylanase 10b (xyn10b) cbm22-1-gh10 modules complexed with4 xylohexaose
87c2zunB_
not modelled 99.6 12 PDB header:hydrolase
Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase;
PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii
88d1egza_
not modelled 99.6 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
89d1wkya2
not modelled 99.6 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
90d1qnra_
not modelled 99.6 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
91c3lpgA_
not modelled 99.6 18 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea
92c3civA_
not modelled 99.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius
93d2pb1a1
not modelled 99.5 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
94c3jugA_
not modelled 99.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5
95d1yq2a5
not modelled 99.5 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
96c2cksB_
not modelled 99.5 17 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase e-5;
PDBTitle: x-ray crystal structure of the catalytic domain of2 thermobifida fusca endoglucanase cel5a (e5)
97c3pzvB_
not modelled 99.4 16 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168
98d1tg7a5
not modelled 99.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Glycosyl hydrolases family 35 catalytic domain
99d1tvna1
not modelled 99.4 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
100d1bqca_
not modelled 99.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
101d7a3ha_
not modelled 99.4 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
102d1h4pa_
not modelled 99.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
103c1us2A_
not modelled 99.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-xylanase;
PDBTitle: xylanase10c (mutant e385a) from cellvibrio japonicus in2 complex with xylopentaose
104d1g01a_
not modelled 99.3 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
105c3cmgA_
not modelled 99.3 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
106d1jz8a5
not modelled 99.3 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
107c3fn9B_
not modelled 99.3 16 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
108c1wkyA_
not modelled 99.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of alkaline mannanase from bacillus sp. strain jamb-2 602: catalytic domain and its carbohydrate binding module
109c1j0yD_
not modelled 99.1 10 PDB header:hydrolase
Chain: D: PDB Molecule:beta-amylase;
PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose
110c2w62A_
not modelled 99.0 21 PDB header:transferase
Chain: A: PDB Molecule:glycolipid-anchored surface protein 2;
PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose
111d1vema2
not modelled 98.9 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
112c3u7vA_
not modelled 98.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15.
113d2je8a5
not modelled 98.8 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
114c2y8kA_
not modelled 98.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate binding family 6;
PDBTitle: structure of ctgh5-cbm6, an arabinoxylan-specific xylanase.
115c2vrqB_
not modelled 98.5 11 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-l-arabinofuranosidase;
PDBTitle: structure of an inactive mutant of arabinofuranosidase from2 thermobacillus xylanilyticus in complex with a3 pentasaccharide
116c3gm8A_
not modelled 98.5 21 PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus
117d2cyga1
not modelled 98.5 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
118c3thdD_
not modelled 98.4 15 PDB header:hydrolase
Chain: D: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin
119c3f55A_
not modelled 98.3 17 PDB header:hydrolase, allergen
Chain: A: PDB Molecule:beta-1,3-glucanase;
PDBTitle: crystal structure of the native endo beta-1,3-glucanase (hev b 2), a2 major allergen from hevea brasiliensis (space group p41)
120c2wnwB_
not modelled 98.2 13 PDB header:hydrolase
Chain: B: PDB Molecule:activated by transcription factor ssrb;
PDBTitle: the crystal structure of srfj from salmonella typhimurium

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0